Query 010086
Match_columns 518
No_of_seqs 379 out of 1697
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 20:53:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 99.8 3.9E-19 8.4E-24 176.1 11.5 112 88-210 33-161 (238)
2 TIGR01444 fkbM_fam methyltrans 99.8 6.1E-18 1.3E-22 153.3 11.6 137 321-477 1-143 (143)
3 PF01209 Ubie_methyltran: ubiE 99.7 1.9E-18 4E-23 171.4 7.9 140 114-274 45-202 (233)
4 PF08241 Methyltransf_11: Meth 99.7 9.8E-17 2.1E-21 133.3 8.1 83 121-204 1-95 (95)
5 PRK14103 trans-aconitate 2-met 99.6 5.7E-15 1.2E-19 147.4 12.3 118 88-207 1-127 (255)
6 PLN02233 ubiquinone biosynthes 99.6 1.2E-14 2.6E-19 146.3 12.0 95 114-209 71-185 (261)
7 KOG1540 Ubiquinone biosynthesi 99.5 3.8E-14 8.3E-19 139.9 12.8 94 115-209 99-218 (296)
8 PRK05785 hypothetical protein; 99.5 4.3E-14 9.4E-19 139.4 12.8 92 115-208 50-148 (226)
9 PRK10258 biotin biosynthesis p 99.5 6.1E-14 1.3E-18 139.4 13.6 91 115-207 41-141 (251)
10 PLN02244 tocopherol O-methyltr 99.5 5.2E-14 1.1E-18 146.8 12.7 91 115-206 117-223 (340)
11 PF05050 Methyltransf_21: Meth 99.5 1.2E-14 2.6E-19 133.4 5.5 153 324-514 1-167 (167)
12 PF13489 Methyltransf_23: Meth 99.5 3.8E-14 8.1E-19 129.4 7.6 104 102-209 10-118 (161)
13 PLN02396 hexaprenyldihydroxybe 99.5 1.5E-13 3.1E-18 142.5 11.1 93 115-209 130-238 (322)
14 PRK01683 trans-aconitate 2-met 99.5 4.8E-13 1E-17 133.3 12.9 117 89-207 4-131 (258)
15 PLN02336 phosphoethanolamine N 99.4 1.2E-12 2.6E-17 141.9 14.7 89 115-205 36-141 (475)
16 COG2227 UbiG 2-polyprenyl-3-me 99.4 2.1E-13 4.4E-18 134.3 6.3 91 116-208 59-163 (243)
17 PTZ00098 phosphoethanolamine N 99.4 1.2E-12 2.6E-17 132.0 11.6 97 109-206 45-156 (263)
18 TIGR02752 MenG_heptapren 2-hep 99.4 1.5E-12 3.3E-17 127.4 11.4 93 113-206 42-151 (231)
19 TIGR00452 methyltransferase, p 99.4 1.6E-12 3.6E-17 134.2 12.0 91 114-206 119-225 (314)
20 PRK11036 putative S-adenosyl-L 99.4 2E-12 4.3E-17 129.3 11.4 93 115-209 43-152 (255)
21 PRK15068 tRNA mo(5)U34 methylt 99.4 1.8E-12 3.9E-17 134.5 11.2 89 116-206 122-226 (322)
22 PLN02336 phosphoethanolamine N 99.4 3E-12 6.6E-17 138.8 12.5 98 108-206 258-369 (475)
23 PRK11207 tellurite resistance 99.3 1.2E-11 2.7E-16 119.3 12.7 115 114-231 28-170 (197)
24 PRK11188 rrmJ 23S rRNA methylt 99.3 1.4E-11 3E-16 120.3 12.8 98 112-210 47-169 (209)
25 TIGR00477 tehB tellurite resis 99.3 1.3E-11 2.8E-16 119.0 12.0 114 115-231 29-169 (195)
26 PLN02490 MPBQ/MSBQ methyltrans 99.3 9.2E-12 2E-16 129.9 11.7 91 114-205 111-214 (340)
27 TIGR02072 BioC biotin biosynth 99.3 1.9E-11 4.1E-16 118.8 12.4 91 116-207 34-136 (240)
28 PF13847 Methyltransf_31: Meth 99.3 7.4E-12 1.6E-16 115.2 8.8 91 115-207 2-111 (152)
29 PRK08317 hypothetical protein; 99.3 2.1E-11 4.5E-16 118.2 12.0 98 108-206 11-124 (241)
30 PRK11873 arsM arsenite S-adeno 99.3 1.2E-11 2.7E-16 124.4 10.1 91 114-205 75-182 (272)
31 KOG4300 Predicted methyltransf 99.2 1.5E-11 3.2E-16 118.4 7.9 87 119-206 79-182 (252)
32 PRK00107 gidB 16S rRNA methylt 99.2 1.4E-10 3E-15 111.6 14.1 127 113-249 42-186 (187)
33 PRK11088 rrmA 23S rRNA methylt 99.2 7.1E-11 1.5E-15 119.4 11.9 86 114-207 83-182 (272)
34 PF12847 Methyltransf_18: Meth 99.2 4.2E-11 9E-16 103.5 8.8 89 116-206 1-111 (112)
35 PF07021 MetW: Methionine bios 99.2 2.2E-11 4.7E-16 116.8 7.6 91 113-207 10-110 (193)
36 PRK12335 tellurite resistance 99.2 1.1E-10 2.3E-15 119.1 12.6 113 116-231 120-259 (287)
37 TIGR03840 TMPT_Se_Te thiopurin 99.2 2.1E-10 4.6E-15 112.4 12.4 116 114-231 32-187 (213)
38 TIGR03587 Pse_Me-ase pseudamin 99.2 3.4E-10 7.4E-15 110.2 13.8 88 114-205 41-141 (204)
39 KOG1270 Methyltransferases [Co 99.2 1.7E-11 3.7E-16 121.9 4.0 89 117-210 90-199 (282)
40 PRK15451 tRNA cmo(5)U34 methyl 99.2 1.5E-10 3.4E-15 115.4 10.9 90 114-206 54-164 (247)
41 PF08242 Methyltransf_12: Meth 99.2 3.7E-11 8E-16 102.3 5.3 81 121-202 1-99 (99)
42 PF08003 Methyltransf_9: Prote 99.1 1.1E-10 2.4E-15 118.9 9.3 89 116-206 115-219 (315)
43 PF02353 CMAS: Mycolic acid cy 99.1 1.7E-10 3.6E-15 117.3 9.9 95 107-206 53-166 (273)
44 TIGR00740 methyltransferase, p 99.1 1.9E-10 4.2E-15 113.7 10.1 90 114-206 51-161 (239)
45 PF13649 Methyltransf_25: Meth 99.1 6E-11 1.3E-15 101.7 5.2 81 120-200 1-101 (101)
46 smart00138 MeTrc Methyltransfe 99.1 2.2E-10 4.7E-15 115.8 10.0 103 103-206 86-242 (264)
47 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 8.3E-10 1.8E-14 106.4 13.5 92 114-206 37-143 (223)
48 PRK06922 hypothetical protein; 99.1 2.7E-10 5.8E-15 126.5 11.0 91 115-206 417-537 (677)
49 PRK13255 thiopurine S-methyltr 99.1 7.8E-10 1.7E-14 108.9 12.5 118 114-233 35-192 (218)
50 TIGR02081 metW methionine bios 99.1 2.8E-10 6.2E-15 109.1 8.2 84 114-198 11-104 (194)
51 smart00828 PKS_MT Methyltransf 99.1 3.3E-10 7.2E-15 110.4 8.8 86 119-206 2-104 (224)
52 PRK06202 hypothetical protein; 99.1 8.5E-10 1.8E-14 108.7 11.0 90 115-206 59-167 (232)
53 PRK00216 ubiE ubiquinone/menaq 99.0 1.7E-09 3.8E-14 105.3 12.4 91 114-205 49-157 (239)
54 PRK11705 cyclopropane fatty ac 99.0 8.9E-10 1.9E-14 117.0 10.7 95 108-206 159-267 (383)
55 PRK04266 fibrillarin; Provisio 99.0 2.2E-09 4.8E-14 106.2 12.7 137 87-235 48-214 (226)
56 TIGR02469 CbiT precorrin-6Y C5 99.0 3E-09 6.6E-14 92.9 11.4 90 113-206 16-122 (124)
57 TIGR00138 gidB 16S rRNA methyl 99.0 2.8E-09 6E-14 101.9 11.8 87 116-208 42-144 (181)
58 PF13383 Methyltransf_22: Meth 99.0 1.8E-09 4E-14 107.8 10.4 135 318-514 83-222 (242)
59 PF05148 Methyltransf_8: Hypot 99.0 5.1E-09 1.1E-13 101.7 12.4 126 115-251 71-199 (219)
60 PF03848 TehB: Tellurite resis 99.0 5.4E-09 1.2E-13 101.0 12.6 113 116-231 30-169 (192)
61 PRK00121 trmB tRNA (guanine-N( 99.0 1.1E-09 2.4E-14 106.2 7.9 91 116-207 40-157 (202)
62 TIGR01983 UbiG ubiquinone bios 99.0 5E-09 1.1E-13 101.9 12.4 90 116-207 45-150 (224)
63 PRK13944 protein-L-isoaspartat 99.0 5.6E-09 1.2E-13 101.4 11.8 88 113-207 69-174 (205)
64 TIGR00438 rrmJ cell division p 98.9 2.6E-08 5.5E-13 95.2 15.1 98 111-208 27-148 (188)
65 PRK05134 bifunctional 3-demeth 98.9 3E-09 6.6E-14 104.4 8.9 92 114-207 46-152 (233)
66 PRK13942 protein-L-isoaspartat 98.9 7.8E-09 1.7E-13 101.1 11.5 98 103-207 63-177 (212)
67 KOG3045 Predicted RNA methylas 98.9 5E-09 1.1E-13 104.1 9.8 125 115-251 179-305 (325)
68 TIGR00091 tRNA (guanine-N(7)-) 98.9 3.6E-09 7.7E-14 101.9 8.0 92 116-208 16-134 (194)
69 PTZ00146 fibrillarin; Provisio 98.9 2.2E-08 4.7E-13 102.4 13.6 123 113-238 129-278 (293)
70 PRK14967 putative methyltransf 98.9 1.6E-08 3.5E-13 99.2 11.6 94 113-207 33-160 (223)
71 COG4106 Tam Trans-aconitate me 98.9 4.6E-09 1E-13 102.1 7.4 118 88-207 2-130 (257)
72 TIGR00537 hemK_rel_arch HemK-r 98.9 2.9E-08 6.4E-13 93.9 12.4 89 115-207 18-141 (179)
73 PLN03075 nicotianamine synthas 98.8 9.4E-08 2E-12 98.0 16.6 129 116-251 123-276 (296)
74 KOG3010 Methyltransferase [Gen 98.8 9.1E-09 2E-13 101.5 8.6 92 116-210 32-141 (261)
75 COG2230 Cfa Cyclopropane fatty 98.8 2E-08 4.3E-13 102.1 10.5 99 110-210 66-181 (283)
76 TIGR00080 pimt protein-L-isoas 98.8 2.1E-08 4.5E-13 98.0 10.3 89 113-208 74-179 (215)
77 KOG1541 Predicted protein carb 98.8 1.4E-08 3.1E-13 98.9 8.9 91 117-209 51-163 (270)
78 TIGR00406 prmA ribosomal prote 98.8 2.7E-08 5.9E-13 101.7 11.3 86 114-205 157-258 (288)
79 PF05175 MTS: Methyltransferas 98.8 5.1E-08 1.1E-12 92.0 12.2 111 116-229 31-162 (170)
80 PRK00517 prmA ribosomal protei 98.8 1.7E-08 3.8E-13 100.9 9.3 114 114-233 117-240 (250)
81 TIGR02021 BchM-ChlM magnesium 98.8 3E-08 6.4E-13 96.8 10.7 86 114-204 53-156 (219)
82 PRK14121 tRNA (guanine-N(7)-)- 98.8 2.3E-08 4.9E-13 106.0 10.4 94 115-209 121-238 (390)
83 PF13659 Methyltransf_26: Meth 98.8 9E-09 1.9E-13 89.7 5.9 91 117-207 1-116 (117)
84 TIGR01177 conserved hypothetic 98.8 3.4E-08 7.3E-13 102.7 11.3 104 104-208 170-296 (329)
85 PRK14968 putative methyltransf 98.8 9.3E-08 2E-12 89.9 12.4 90 115-207 22-149 (188)
86 PRK09489 rsmC 16S ribosomal RN 98.7 8.2E-08 1.8E-12 100.7 12.3 109 116-228 196-324 (342)
87 PLN02232 ubiquinone biosynthes 98.7 2E-08 4.3E-13 93.9 5.8 53 153-206 29-81 (160)
88 PRK00312 pcm protein-L-isoaspa 98.7 1.2E-07 2.5E-12 92.2 11.2 91 109-207 71-176 (212)
89 PRK08287 cobalt-precorrin-6Y C 98.7 1.7E-07 3.7E-12 89.3 11.5 87 114-206 29-131 (187)
90 TIGR02716 C20_methyl_CrtF C-20 98.7 1.2E-07 2.6E-12 97.4 11.1 95 108-205 141-253 (306)
91 PRK15001 SAM-dependent 23S rib 98.7 1.1E-07 2.4E-12 100.8 11.1 109 117-228 229-361 (378)
92 PRK13256 thiopurine S-methyltr 98.7 5.6E-08 1.2E-12 96.3 8.3 118 111-230 38-196 (226)
93 PF06325 PrmA: Ribosomal prote 98.7 1.8E-07 4E-12 96.1 12.3 121 114-250 159-295 (295)
94 PRK07580 Mg-protoporphyrin IX 98.7 1.7E-07 3.7E-12 91.4 11.5 83 114-201 61-161 (230)
95 cd02440 AdoMet_MTases S-adenos 98.7 1.2E-07 2.7E-12 77.6 8.7 86 119-205 1-103 (107)
96 TIGR03438 probable methyltrans 98.6 1.6E-07 3.5E-12 96.6 11.3 111 94-207 43-178 (301)
97 PF03141 Methyltransf_29: Puta 98.6 2.9E-08 6.3E-13 106.8 5.5 85 119-206 120-219 (506)
98 PRK00377 cbiT cobalt-precorrin 98.6 2.3E-07 5E-12 89.5 10.9 90 113-206 37-145 (198)
99 PRK01544 bifunctional N5-gluta 98.6 1.4E-06 3.1E-11 95.9 18.3 289 116-470 138-485 (506)
100 COG2264 PrmA Ribosomal protein 98.6 1.3E-07 2.9E-12 96.8 9.4 113 113-233 159-290 (300)
101 TIGR03534 RF_mod_PrmC protein- 98.5 6.8E-07 1.5E-11 88.2 11.4 92 116-208 87-219 (251)
102 PF05401 NodS: Nodulation prot 98.5 3.6E-07 7.9E-12 88.2 8.6 90 117-209 44-149 (201)
103 KOG1269 SAM-dependent methyltr 98.5 1.3E-07 2.8E-12 99.8 5.5 91 114-205 108-214 (364)
104 PLN02585 magnesium protoporphy 98.5 8.5E-07 1.8E-11 92.0 11.3 82 116-203 144-247 (315)
105 PRK13943 protein-L-isoaspartat 98.5 9.5E-07 2.1E-11 91.9 11.3 95 106-207 70-181 (322)
106 PRK07402 precorrin-6B methylas 98.5 1.1E-06 2.3E-11 84.5 10.9 89 114-207 38-143 (196)
107 KOG1271 Methyltransferases [Ge 98.5 1.9E-06 4.1E-11 82.1 12.0 114 114-231 64-203 (227)
108 PF05219 DREV: DREV methyltran 98.4 1E-06 2.2E-11 88.4 9.0 88 117-206 95-188 (265)
109 TIGR00536 hemK_fam HemK family 98.4 4.1E-06 8.8E-11 85.5 13.7 91 118-209 116-247 (284)
110 TIGR00563 rsmB ribosomal RNA s 98.4 1.2E-06 2.5E-11 94.4 9.8 93 114-206 236-368 (426)
111 PF03291 Pox_MCEL: mRNA cappin 98.4 1.2E-06 2.5E-11 91.7 8.9 91 116-207 62-187 (331)
112 PRK10901 16S rRNA methyltransf 98.4 1.3E-06 2.9E-11 94.1 9.6 93 114-206 242-372 (427)
113 KOG1975 mRNA cap methyltransfe 98.4 7.8E-07 1.7E-11 91.1 7.1 95 113-208 114-239 (389)
114 COG2518 Pcm Protein-L-isoaspar 98.4 2.4E-06 5.1E-11 83.4 10.1 97 103-208 59-171 (209)
115 PRK14901 16S rRNA methyltransf 98.4 1.4E-06 3E-11 94.2 9.4 93 114-206 250-384 (434)
116 PRK09328 N5-glutamine S-adenos 98.3 6.2E-06 1.3E-10 82.8 13.2 94 114-208 106-240 (275)
117 PRK11805 N5-glutamine S-adenos 98.3 3.2E-06 7E-11 87.4 10.6 107 118-229 135-282 (307)
118 PF01135 PCMT: Protein-L-isoas 98.3 1.4E-06 3.1E-11 85.3 7.6 99 103-208 59-174 (209)
119 PF05724 TPMT: Thiopurine S-me 98.3 2.7E-06 5.9E-11 83.9 9.3 118 113-232 34-191 (218)
120 COG2521 Predicted archaeal met 98.3 2.2E-06 4.7E-11 84.5 8.4 97 114-210 132-249 (287)
121 smart00650 rADc Ribosomal RNA 98.3 2.2E-06 4.7E-11 80.6 8.2 94 108-206 5-113 (169)
122 TIGR03533 L3_gln_methyl protei 98.3 5.5E-06 1.2E-10 84.7 11.6 103 116-223 121-264 (284)
123 KOG2940 Predicted methyltransf 98.3 6E-07 1.3E-11 88.2 4.2 94 116-210 72-178 (325)
124 PRK14904 16S rRNA methyltransf 98.2 4.2E-06 9.1E-11 90.7 9.6 92 114-206 248-377 (445)
125 PRK14966 unknown domain/N5-glu 98.2 2.4E-05 5.3E-10 83.8 14.6 106 114-222 249-394 (423)
126 PRK00811 spermidine synthase; 98.2 5.1E-06 1.1E-10 85.0 9.0 91 115-207 75-192 (283)
127 PRK14903 16S rRNA methyltransf 98.2 3.6E-06 7.7E-11 91.0 8.1 94 114-207 235-367 (431)
128 KOG1331 Predicted methyltransf 98.2 2.4E-06 5.2E-11 86.4 6.2 93 114-210 43-147 (293)
129 COG4976 Predicted methyltransf 98.2 5.7E-07 1.2E-11 88.4 1.7 104 103-208 112-227 (287)
130 PRK04457 spermidine synthase; 98.2 9.2E-06 2E-10 82.2 10.4 93 115-209 65-180 (262)
131 PRK13168 rumA 23S rRNA m(5)U19 98.2 2.1E-05 4.5E-10 85.2 13.7 124 114-246 295-438 (443)
132 COG2242 CobL Precorrin-6B meth 98.2 1.1E-05 2.4E-10 77.4 10.1 89 113-207 31-136 (187)
133 PHA03411 putative methyltransf 98.2 7.9E-06 1.7E-10 83.1 9.6 94 116-211 64-188 (279)
134 PF02390 Methyltransf_4: Putat 98.1 4.3E-06 9.4E-11 81.0 7.0 85 118-208 19-135 (195)
135 KOG2352 Predicted spermine/spe 98.1 4.9E-06 1.1E-10 89.6 7.8 92 113-205 44-160 (482)
136 TIGR00446 nop2p NOL1/NOP2/sun 98.1 6.3E-06 1.4E-10 83.3 7.8 93 114-206 69-199 (264)
137 PRK14902 16S rRNA methyltransf 98.1 9.3E-06 2E-10 88.0 9.4 92 114-206 248-379 (444)
138 PF11968 DUF3321: Putative met 98.0 3.2E-05 7E-10 75.8 9.7 86 118-206 53-149 (219)
139 COG2813 RsmC 16S RNA G1207 met 98.0 6.4E-05 1.4E-09 77.1 12.2 111 115-229 157-288 (300)
140 PRK03522 rumB 23S rRNA methylu 98.0 8.4E-05 1.8E-09 77.0 12.9 115 116-238 173-303 (315)
141 COG4123 Predicted O-methyltran 98.0 6.9E-05 1.5E-09 75.2 11.7 134 114-250 42-213 (248)
142 KOG2361 Predicted methyltransf 98.0 9.4E-06 2E-10 80.5 5.2 105 100-206 56-183 (264)
143 COG2519 GCD14 tRNA(1-methylade 97.9 6.4E-05 1.4E-09 75.3 9.8 91 109-206 87-195 (256)
144 PLN02781 Probable caffeoyl-CoA 97.9 4.7E-05 1E-09 75.8 9.0 87 115-205 67-177 (234)
145 COG1041 Predicted DNA modifica 97.9 0.00013 2.9E-09 76.1 12.5 104 103-207 184-311 (347)
146 TIGR03704 PrmC_rel_meth putati 97.9 0.00013 2.8E-09 73.3 11.8 93 117-209 87-219 (251)
147 TIGR00479 rumA 23S rRNA (uraci 97.9 6.2E-05 1.3E-09 81.2 9.8 115 114-235 290-424 (431)
148 TIGR00417 speE spermidine synt 97.8 7.9E-05 1.7E-09 75.6 9.8 92 115-207 71-187 (270)
149 PRK10909 rsmD 16S rRNA m(2)G96 97.8 0.00014 3E-09 70.9 10.9 114 115-238 52-183 (199)
150 COG0220 Predicted S-adenosylme 97.8 5E-05 1.1E-09 75.4 7.9 85 118-208 50-166 (227)
151 COG0500 SmtA SAM-dependent met 97.8 0.0001 2.2E-09 62.1 8.7 87 120-209 52-158 (257)
152 PF00891 Methyltransf_2: O-met 97.8 0.00022 4.7E-09 70.6 12.3 94 108-205 92-198 (241)
153 TIGR00478 tly hemolysin TlyA f 97.8 9E-05 2E-09 73.7 9.4 82 115-206 74-171 (228)
154 PRK01581 speE spermidine synth 97.8 8.9E-05 1.9E-09 78.3 9.8 91 115-207 149-269 (374)
155 PRK03612 spermidine synthase; 97.8 4.9E-05 1.1E-09 84.1 8.0 92 115-207 296-416 (521)
156 PF01728 FtsJ: FtsJ-like methy 97.8 2.8E-05 6.1E-10 73.6 4.9 117 112-231 17-163 (181)
157 PF01739 CheR: CheR methyltran 97.7 7.6E-05 1.7E-09 72.6 7.3 90 116-206 31-175 (196)
158 PRK11783 rlmL 23S rRNA m(2)G24 97.7 5.3E-05 1.2E-09 86.7 7.0 93 115-207 537-657 (702)
159 PLN02366 spermidine synthase 97.7 0.00012 2.5E-09 76.0 8.7 93 114-207 89-207 (308)
160 PHA03412 putative methyltransf 97.7 0.0001 2.2E-09 73.6 7.5 85 116-201 49-158 (241)
161 PRK10611 chemotaxis methyltran 97.7 7.9E-05 1.7E-09 76.5 6.9 88 118-206 117-262 (287)
162 PF06080 DUF938: Protein of un 97.6 0.00021 4.6E-09 69.7 8.9 90 115-205 23-140 (204)
163 PF08704 GCD14: tRNA methyltra 97.6 0.00011 2.4E-09 73.9 6.9 90 111-206 35-146 (247)
164 COG0293 FtsJ 23S rRNA methylas 97.6 0.00079 1.7E-08 65.8 12.5 120 112-233 41-185 (205)
165 PRK14896 ksgA 16S ribosomal RN 97.6 0.00021 4.6E-09 72.0 8.2 67 108-177 21-100 (258)
166 COG2890 HemK Methylase of poly 97.6 0.00029 6.3E-09 72.1 9.1 99 119-222 113-251 (280)
167 KOG2899 Predicted methyltransf 97.6 0.00025 5.3E-09 70.7 8.0 91 116-206 58-209 (288)
168 PF07942 N2227: N2227-like pro 97.5 0.00062 1.3E-08 69.3 10.5 115 87-203 23-199 (270)
169 KOG1499 Protein arginine N-met 97.5 0.00015 3.3E-09 75.5 6.0 88 114-203 58-164 (346)
170 PRK00274 ksgA 16S ribosomal RN 97.5 0.00028 6.2E-09 71.6 7.7 68 108-176 34-113 (272)
171 TIGR02085 meth_trns_rumB 23S r 97.5 0.00085 1.8E-08 71.3 11.3 115 116-238 233-363 (374)
172 TIGR00755 ksgA dimethyladenosi 97.4 0.00081 1.8E-08 67.4 10.3 69 105-176 18-102 (253)
173 PRK01544 bifunctional N5-gluta 97.4 0.00026 5.6E-09 78.2 6.9 93 116-209 347-465 (506)
174 PF03141 Methyltransf_29: Puta 97.4 0.00014 3.1E-09 78.8 4.7 110 91-206 343-467 (506)
175 COG4627 Uncharacterized protei 97.4 4.8E-05 1E-09 70.9 0.7 80 119-207 5-87 (185)
176 KOG1661 Protein-L-isoaspartate 97.3 0.00088 1.9E-08 65.5 8.4 101 99-208 67-195 (237)
177 PRK15128 23S rRNA m(5)C1962 me 97.3 0.00058 1.3E-08 73.2 7.7 92 115-206 219-339 (396)
178 PLN02672 methionine S-methyltr 97.2 0.0012 2.6E-08 78.4 9.9 94 117-211 119-283 (1082)
179 COG1352 CheR Methylase of chem 97.2 0.0056 1.2E-07 62.4 13.5 117 85-206 69-241 (268)
180 PF05575 V_cholerae_RfbT: Vibr 97.2 0.0027 5.9E-08 60.2 10.1 171 317-516 78-260 (286)
181 PF01170 UPF0020: Putative RNA 97.2 0.0024 5.3E-08 61.0 9.7 98 108-207 20-151 (179)
182 PRK04338 N(2),N(2)-dimethylgua 97.1 0.00032 7E-09 74.8 3.3 84 117-205 58-157 (382)
183 COG4122 Predicted O-methyltran 97.1 0.0021 4.5E-08 63.7 8.6 88 114-205 57-165 (219)
184 PF05185 PRMT5: PRMT5 arginine 97.1 0.0025 5.3E-08 69.5 9.9 84 117-203 187-294 (448)
185 PLN02476 O-methyltransferase 97.0 0.0025 5.3E-08 65.3 8.9 88 114-205 116-227 (278)
186 PF05891 Methyltransf_PK: AdoM 97.0 0.004 8.6E-08 61.4 9.9 115 116-231 55-201 (218)
187 PF02527 GidB: rRNA small subu 97.0 0.0047 1E-07 59.6 10.1 93 111-209 42-151 (184)
188 TIGR00095 RNA methyltransferas 97.0 0.0071 1.5E-07 58.3 11.2 92 116-209 49-162 (189)
189 PTZ00338 dimethyladenosine tra 97.0 0.0019 4.2E-08 66.6 7.4 70 104-176 24-109 (294)
190 PRK04148 hypothetical protein; 97.0 0.0038 8.2E-08 57.3 8.5 60 116-176 16-85 (134)
191 COG0421 SpeE Spermidine syntha 96.9 0.0061 1.3E-07 62.6 10.1 86 118-207 78-191 (282)
192 PHA01634 hypothetical protein 96.9 0.0017 3.6E-08 59.0 5.2 41 318-365 28-68 (156)
193 PF10294 Methyltransf_16: Puta 96.8 0.0045 9.9E-08 58.7 8.3 93 114-207 43-157 (173)
194 PF01596 Methyltransf_3: O-met 96.8 0.0023 5E-08 62.7 6.4 86 116-205 45-154 (205)
195 KOG2904 Predicted methyltransf 96.8 0.0063 1.4E-07 61.8 9.4 92 116-207 148-286 (328)
196 PRK11933 yebU rRNA (cytosine-C 96.8 0.0043 9.3E-08 68.0 8.9 93 114-206 111-242 (470)
197 PRK11760 putative 23S rRNA C24 96.7 0.0059 1.3E-07 64.1 8.8 89 112-206 207-305 (357)
198 PLN02823 spermine synthase 96.6 0.0074 1.6E-07 63.5 8.6 90 116-207 103-221 (336)
199 PF08123 DOT1: Histone methyla 96.6 0.0026 5.7E-08 62.3 4.7 99 103-203 29-155 (205)
200 PF03602 Cons_hypoth95: Conser 96.5 0.0039 8.5E-08 59.9 5.1 109 116-231 42-173 (183)
201 COG2263 Predicted RNA methylas 96.3 0.0025 5.5E-08 61.5 2.9 49 100-149 30-78 (198)
202 COG3963 Phospholipid N-methylt 96.3 0.051 1.1E-06 51.8 11.1 92 114-206 46-156 (194)
203 PF02475 Met_10: Met-10+ like- 96.2 0.011 2.4E-07 57.8 6.6 84 114-203 99-199 (200)
204 KOG1709 Guanidinoacetate methy 96.2 0.01 2.3E-07 58.4 6.1 90 115-205 100-205 (271)
205 COG0030 KsgA Dimethyladenosine 96.2 0.016 3.4E-07 58.8 7.7 72 104-176 18-103 (259)
206 TIGR03439 methyl_EasF probable 96.1 0.068 1.5E-06 55.9 12.5 110 96-207 58-198 (319)
207 PLN02589 caffeoyl-CoA O-methyl 96.1 0.012 2.7E-07 59.2 6.8 86 116-205 79-189 (247)
208 KOG3987 Uncharacterized conser 96.1 0.0022 4.7E-08 62.7 1.3 87 117-206 113-207 (288)
209 KOG1500 Protein arginine N-met 96.1 0.011 2.5E-07 61.4 6.6 89 116-207 177-283 (517)
210 PF01269 Fibrillarin: Fibrilla 96.1 0.059 1.3E-06 53.5 11.2 121 113-238 70-219 (229)
211 PRK00536 speE spermidine synth 96.1 0.03 6.4E-07 57.0 9.2 85 115-208 71-173 (262)
212 TIGR02143 trmA_only tRNA (urac 96.0 0.028 6.1E-07 59.4 9.3 111 118-237 199-340 (353)
213 KOG0820 Ribosomal RNA adenine 96.0 0.023 4.9E-07 57.9 8.0 72 102-176 44-131 (315)
214 COG1189 Predicted rRNA methyla 95.9 0.056 1.2E-06 54.1 9.8 110 85-206 55-178 (245)
215 PRK05031 tRNA (uracil-5-)-meth 95.8 0.04 8.6E-07 58.5 9.4 112 117-237 207-349 (362)
216 PF01234 NNMT_PNMT_TEMT: NNMT/ 95.8 0.017 3.8E-07 58.5 6.2 95 109-206 50-199 (256)
217 COG0742 N6-adenine-specific me 95.7 0.098 2.1E-06 50.6 10.5 114 116-238 43-178 (187)
218 PRK11727 23S rRNA mA1618 methy 95.4 0.015 3.3E-07 60.7 4.2 61 116-176 114-197 (321)
219 PF09243 Rsm22: Mitochondrial 95.4 0.068 1.5E-06 54.6 8.8 81 101-184 18-117 (274)
220 PF01564 Spermine_synth: Sperm 95.3 0.041 8.9E-07 55.3 6.9 91 115-207 75-192 (246)
221 PF03269 DUF268: Caenorhabditi 95.3 0.02 4.3E-07 54.1 4.3 113 117-231 2-145 (177)
222 KOG1663 O-methyltransferase [S 95.3 0.14 3.1E-06 51.0 10.3 86 116-205 73-182 (237)
223 COG1092 Predicted SAM-dependen 95.1 0.056 1.2E-06 58.0 7.4 96 112-208 214-338 (393)
224 KOG3420 Predicted RNA methylas 95.0 0.021 4.6E-07 53.1 3.3 61 116-176 48-122 (185)
225 PF13679 Methyltransf_32: Meth 94.9 0.083 1.8E-06 48.3 7.2 54 96-149 4-63 (141)
226 COG1064 AdhP Zn-dependent alco 94.9 0.1 2.2E-06 54.9 8.6 85 112-205 162-258 (339)
227 COG4798 Predicted methyltransf 94.8 0.087 1.9E-06 51.4 7.0 94 113-207 45-167 (238)
228 PF02384 N6_Mtase: N-6 DNA Met 94.8 0.12 2.7E-06 53.0 8.7 137 114-251 44-234 (311)
229 COG1889 NOP1 Fibrillarin-like 94.6 0.52 1.1E-05 46.4 11.8 122 113-238 73-221 (231)
230 PF03059 NAS: Nicotianamine sy 94.5 0.4 8.6E-06 49.3 11.5 90 118-207 122-231 (276)
231 COG0144 Sun tRNA and rRNA cyto 94.4 0.13 2.9E-06 54.4 8.1 93 114-206 154-288 (355)
232 TIGR00308 TRM1 tRNA(guanine-26 94.3 0.066 1.4E-06 57.2 5.6 85 117-206 45-147 (374)
233 PF00398 RrnaAD: Ribosomal RNA 94.1 0.14 3.1E-06 51.6 7.3 70 106-176 20-105 (262)
234 PF12147 Methyltransf_20: Puta 94.1 0.5 1.1E-05 48.8 11.0 94 116-210 135-255 (311)
235 KOG3178 Hydroxyindole-O-methyl 93.9 0.4 8.7E-06 50.4 10.3 84 116-205 177-274 (342)
236 COG2520 Predicted methyltransf 93.7 0.2 4.3E-06 52.8 7.7 87 114-205 186-288 (341)
237 COG3897 Predicted methyltransf 93.7 0.39 8.4E-06 47.0 8.9 94 116-211 79-183 (218)
238 KOG4589 Cell division protein 93.6 0.61 1.3E-05 45.4 9.9 98 112-211 65-189 (232)
239 PF05958 tRNA_U5-meth_tr: tRNA 93.4 0.27 5.9E-06 52.0 8.2 110 118-238 198-340 (352)
240 COG0357 GidB Predicted S-adeno 93.3 0.38 8.3E-06 47.6 8.5 84 117-205 68-167 (215)
241 COG2242 CobL Precorrin-6B meth 93.2 0.9 2E-05 44.0 10.6 119 311-466 27-154 (187)
242 KOG2915 tRNA(1-methyladenosine 93.2 0.27 5.9E-06 50.2 7.3 90 113-208 102-211 (314)
243 PRK11783 rlmL 23S rRNA m(2)G24 93.0 0.41 8.8E-06 55.3 9.4 110 100-209 173-350 (702)
244 PLN02668 indole-3-acetate carb 92.7 0.66 1.4E-05 49.8 9.9 27 157-184 151-177 (386)
245 TIGR02987 met_A_Alw26 type II 92.2 1.7 3.7E-05 48.3 12.6 34 116-149 31-73 (524)
246 PF13578 Methyltransf_24: Meth 91.6 0.051 1.1E-06 46.6 -0.1 83 121-205 1-104 (106)
247 PRK00050 16S rRNA m(4)C1402 me 91.2 0.25 5.4E-06 51.2 4.4 47 103-149 6-54 (296)
248 PRK13699 putative methylase; P 91.2 0.13 2.9E-06 51.0 2.4 42 312-361 157-198 (227)
249 KOG2798 Putative trehalase [Ca 90.6 0.96 2.1E-05 47.2 7.9 37 167-204 258-294 (369)
250 KOG1099 SAM-dependent methyltr 90.5 0.64 1.4E-05 46.5 6.3 94 116-209 41-166 (294)
251 PF03492 Methyltransf_7: SAM d 90.0 0.55 1.2E-05 49.4 5.8 67 116-183 16-121 (334)
252 PRK11524 putative methyltransf 89.0 0.29 6.2E-06 50.1 2.7 54 154-207 11-81 (284)
253 COG1063 Tdh Threonine dehydrog 88.5 1.4 2.9E-05 46.5 7.5 90 113-209 165-273 (350)
254 PRK09880 L-idonate 5-dehydroge 88.5 4.8 0.0001 41.6 11.5 85 114-205 167-265 (343)
255 PF10672 Methyltrans_SAM: S-ad 88.3 0.58 1.3E-05 48.3 4.4 93 115-207 122-239 (286)
256 PRK10909 rsmD 16S rRNA m(2)G96 88.0 4.7 0.0001 39.3 10.4 52 428-479 110-162 (199)
257 PF12847 Methyltransf_18: Meth 88.0 0.94 2E-05 38.5 4.9 54 318-377 1-61 (112)
258 cd08254 hydroxyacyl_CoA_DH 6-h 87.8 2.4 5.1E-05 43.0 8.6 90 108-205 157-262 (338)
259 cd08283 FDH_like_1 Glutathione 87.2 3.1 6.6E-05 44.0 9.3 96 110-205 178-305 (386)
260 PF07757 AdoMet_MTase: Predict 86.8 1.2 2.7E-05 39.5 4.9 32 116-148 58-89 (112)
261 PF05219 DREV: DREV methyltran 86.7 4.3 9.3E-05 41.4 9.4 131 321-517 97-238 (265)
262 COG2265 TrmA SAM-dependent met 86.2 3.9 8.4E-05 44.7 9.5 117 114-237 291-426 (432)
263 PRK09424 pntA NAD(P) transhydr 86.2 1 2.2E-05 50.2 5.1 90 114-205 162-284 (509)
264 KOG3191 Predicted N6-DNA-methy 86.2 4.6 9.9E-05 39.3 8.8 90 117-207 44-169 (209)
265 KOG1596 Fibrillarin and relate 85.8 3.1 6.6E-05 42.1 7.7 91 113-208 153-263 (317)
266 PF01189 Nol1_Nop2_Fmu: NOL1/N 85.6 0.78 1.7E-05 47.1 3.6 93 114-206 83-219 (283)
267 KOG0024 Sorbitol dehydrogenase 85.5 2 4.3E-05 45.1 6.5 90 110-206 163-273 (354)
268 COG4262 Predicted spermidine s 85.2 2.8 6.2E-05 44.7 7.5 91 114-207 287-408 (508)
269 cd08237 ribitol-5-phosphate_DH 85.0 3.5 7.6E-05 42.8 8.3 88 114-205 161-255 (341)
270 PF04445 SAM_MT: Putative SAM- 84.2 0.92 2E-05 45.5 3.3 66 114-181 71-163 (234)
271 TIGR01444 fkbM_fam methyltrans 83.9 1.1 2.4E-05 40.1 3.5 30 120-149 2-32 (143)
272 COG4076 Predicted RNA methylas 83.8 1.7 3.8E-05 42.3 4.8 56 118-176 34-104 (252)
273 PF06859 Bin3: Bicoid-interact 83.7 0.52 1.1E-05 41.8 1.2 39 168-206 1-44 (110)
274 PF04672 Methyltransf_19: S-ad 83.3 14 0.0003 37.9 11.4 103 99-206 54-190 (267)
275 TIGR03451 mycoS_dep_FDH mycoth 83.2 5.8 0.00013 41.3 9.0 91 108-205 168-275 (358)
276 TIGR01202 bchC 2-desacetyl-2-h 83.0 3.3 7.2E-05 42.3 7.0 83 115-205 143-230 (308)
277 COG5459 Predicted rRNA methyla 82.9 1.7 3.6E-05 46.1 4.6 86 118-206 115-225 (484)
278 cd05188 MDR Medium chain reduc 81.5 9.3 0.0002 36.9 9.2 91 106-206 124-232 (271)
279 KOG2187 tRNA uracil-5-methyltr 81.4 1.9 4.1E-05 47.6 4.6 49 98-150 368-416 (534)
280 PRK07402 precorrin-6B methylas 81.2 3.5 7.6E-05 39.4 6.0 40 317-362 39-78 (196)
281 PRK04457 spermidine synthase; 80.9 14 0.00031 37.4 10.5 36 321-362 69-104 (262)
282 PRK10742 putative methyltransf 80.3 3.4 7.4E-05 41.9 5.7 36 113-149 83-120 (250)
283 TIGR00138 gidB 16S rRNA methyl 80.2 3.6 7.8E-05 39.3 5.6 62 289-361 18-79 (181)
284 cd00401 AdoHcyase S-adenosyl-L 80.1 3.1 6.8E-05 45.2 5.7 88 112-206 197-289 (413)
285 cd08281 liver_ADH_like1 Zinc-d 79.7 4.8 0.0001 42.2 7.0 90 109-205 184-289 (371)
286 PRK05476 S-adenosyl-L-homocyst 79.5 8.3 0.00018 42.1 8.7 98 112-217 207-310 (425)
287 KOG3115 Methyltransferase-like 79.5 4.8 0.0001 39.8 6.2 47 92-147 45-92 (249)
288 PF00398 RrnaAD: Ribosomal RNA 78.9 3.2 7E-05 41.9 5.1 52 317-376 29-84 (262)
289 KOG1122 tRNA and rRNA cytosine 78.7 6.3 0.00014 42.7 7.3 92 114-206 239-371 (460)
290 KOG2920 Predicted methyltransf 78.1 2.2 4.8E-05 43.8 3.6 37 112-148 112-148 (282)
291 cd08230 glucose_DH Glucose deh 78.0 2.8 6.1E-05 43.5 4.5 84 114-205 170-268 (355)
292 COG4076 Predicted RNA methylas 76.1 2.7 5.8E-05 41.1 3.4 54 314-375 28-87 (252)
293 PLN02740 Alcohol dehydrogenase 74.9 12 0.00026 39.4 8.4 89 110-205 192-299 (381)
294 PF08123 DOT1: Histone methyla 74.7 2.6 5.7E-05 41.3 3.0 41 315-361 39-79 (205)
295 TIGR00755 ksgA dimethyladenosi 74.1 5.2 0.00011 40.0 5.1 52 316-375 27-82 (253)
296 PLN02827 Alcohol dehydrogenase 74.0 6.5 0.00014 41.6 6.0 88 111-205 188-294 (378)
297 PRK00274 ksgA 16S ribosomal RN 73.7 5.1 0.00011 40.7 4.9 52 316-375 40-94 (272)
298 PRK00121 trmB tRNA (guanine-N( 73.6 25 0.00054 34.0 9.5 127 318-469 40-178 (202)
299 TIGR03366 HpnZ_proposed putati 73.3 9.5 0.00021 38.3 6.8 85 114-205 118-217 (280)
300 cd00315 Cyt_C5_DNA_methylase C 73.3 5.4 0.00012 40.6 5.1 58 119-176 2-70 (275)
301 cd08232 idonate-5-DH L-idonate 72.5 40 0.00087 34.3 11.3 90 108-205 158-261 (339)
302 TIGR02469 CbiT precorrin-6Y C5 72.3 9.9 0.00022 32.5 5.8 40 317-362 18-57 (124)
303 cd08231 MDR_TM0436_like Hypoth 72.1 23 0.0005 36.7 9.5 89 108-205 169-279 (361)
304 PF05206 TRM13: Methyltransfer 71.6 9.3 0.0002 38.9 6.2 47 102-148 4-56 (259)
305 PRK09489 rsmC 16S ribosomal RN 71.4 13 0.00028 39.4 7.4 36 321-362 199-234 (342)
306 PF09445 Methyltransf_15: RNA 71.1 3.6 7.9E-05 39.0 2.9 30 119-149 2-31 (163)
307 PRK04266 fibrillarin; Provisio 70.6 8.3 0.00018 38.3 5.5 54 314-373 68-125 (226)
308 PLN02586 probable cinnamyl alc 70.2 21 0.00045 37.5 8.7 87 111-205 178-277 (360)
309 PF04816 DUF633: Family of unk 70.0 25 0.00054 34.5 8.6 124 120-252 1-142 (205)
310 PF11899 DUF3419: Protein of u 69.3 5.1 0.00011 43.0 4.0 42 164-206 291-334 (380)
311 KOG1500 Protein arginine N-met 69.0 3.8 8.1E-05 43.3 2.7 52 301-359 159-211 (517)
312 PF05185 PRMT5: PRMT5 arginine 68.8 4 8.6E-05 44.8 3.0 56 318-375 186-248 (448)
313 TIGR00936 ahcY adenosylhomocys 68.1 16 0.00035 39.7 7.4 100 112-219 190-295 (406)
314 PF07091 FmrO: Ribosomal RNA m 67.9 5.7 0.00012 40.3 3.7 37 113-149 102-139 (251)
315 PRK11188 rrmJ 23S rRNA methylt 67.8 9.9 0.00021 37.1 5.3 49 317-375 50-98 (209)
316 cd05285 sorbitol_DH Sorbitol d 67.6 79 0.0017 32.4 12.3 89 110-205 156-264 (343)
317 cd08234 threonine_DH_like L-th 67.5 20 0.00043 36.4 7.7 89 110-205 153-256 (334)
318 KOG1501 Arginine N-methyltrans 67.3 7.7 0.00017 42.4 4.7 29 119-147 69-97 (636)
319 PRK01683 trans-aconitate 2-met 67.2 11 0.00023 37.5 5.6 54 316-375 29-83 (258)
320 KOG2198 tRNA cytosine-5-methyl 67.2 12 0.00025 40.1 5.9 118 114-231 153-326 (375)
321 PRK08287 cobalt-precorrin-6Y C 67.2 13 0.00028 35.2 5.9 53 317-375 30-88 (187)
322 TIGR02822 adh_fam_2 zinc-bindi 66.7 12 0.00025 38.8 5.9 84 112-205 161-253 (329)
323 PF04989 CmcI: Cephalosporin h 66.5 20 0.00044 35.4 7.1 88 117-206 33-147 (206)
324 cd08239 THR_DH_like L-threonin 65.9 31 0.00066 35.3 8.8 86 113-205 160-261 (339)
325 cd08277 liver_alcohol_DH_like 65.3 19 0.0004 37.7 7.2 91 108-205 176-285 (365)
326 PRK00050 16S rRNA m(4)C1402 me 64.1 12 0.00026 38.9 5.3 55 316-375 17-75 (296)
327 COG0030 KsgA Dimethyladenosine 63.6 13 0.00028 37.9 5.4 52 316-375 28-83 (259)
328 PLN02494 adenosylhomocysteinas 63.5 15 0.00033 40.6 6.2 100 112-218 249-353 (477)
329 PLN03154 putative allyl alcoho 63.2 22 0.00047 37.1 7.2 89 108-205 150-257 (348)
330 cd08233 butanediol_DH_like (2R 63.0 36 0.00078 35.0 8.7 88 111-205 167-271 (351)
331 cd08300 alcohol_DH_class_III c 62.8 20 0.00043 37.5 6.8 90 109-205 179-287 (368)
332 TIGR02818 adh_III_F_hyde S-(hy 62.2 17 0.00038 38.0 6.3 91 108-205 177-286 (368)
333 TIGR00091 tRNA (guanine-N(7)-) 62.0 11 0.00024 36.0 4.4 53 318-376 16-74 (194)
334 KOG4058 Uncharacterized conser 61.9 8.7 0.00019 36.3 3.4 35 115-149 71-105 (199)
335 TIGR00561 pntA NAD(P) transhyd 61.9 15 0.00033 41.0 5.9 87 116-204 163-282 (511)
336 cd05278 FDH_like Formaldehyde 60.6 33 0.00072 34.9 7.9 87 112-205 163-266 (347)
337 cd08285 NADP_ADH NADP(H)-depen 60.5 49 0.0011 34.0 9.2 89 110-205 160-265 (351)
338 PRK00107 gidB 16S rRNA methylt 60.5 18 0.00038 34.9 5.5 38 319-362 46-83 (187)
339 cd08294 leukotriene_B4_DH_like 60.2 52 0.0011 33.1 9.2 89 108-205 135-240 (329)
340 PTZ00338 dimethyladenosine tra 60.2 13 0.00028 38.5 4.8 54 316-377 34-94 (294)
341 smart00650 rADc Ribosomal RNA 59.6 16 0.00035 33.9 5.0 52 316-375 11-66 (169)
342 TIGR00478 tly hemolysin TlyA f 59.5 15 0.00033 36.6 5.0 49 318-373 75-124 (228)
343 PF13847 Methyltransf_31: Meth 59.1 21 0.00046 32.4 5.5 53 317-375 2-61 (152)
344 cd08240 6_hydroxyhexanoate_dh_ 59.0 86 0.0019 32.2 10.7 89 109-205 168-273 (350)
345 TIGR02825 B4_12hDH leukotriene 58.5 68 0.0015 32.6 9.8 89 108-205 130-236 (325)
346 PF01555 N6_N4_Mtase: DNA meth 58.4 16 0.00034 34.7 4.8 48 100-149 176-223 (231)
347 PF01555 N6_N4_Mtase: DNA meth 58.1 6.8 0.00015 37.3 2.2 25 185-209 35-59 (231)
348 PRK13942 protein-L-isoaspartat 57.9 20 0.00044 34.9 5.5 42 316-362 74-115 (212)
349 PHA01634 hypothetical protein 57.8 12 0.00027 34.4 3.6 34 116-149 28-61 (156)
350 PRK10309 galactitol-1-phosphat 57.7 50 0.0011 34.0 8.7 88 111-205 155-259 (347)
351 cd08298 CAD2 Cinnamyl alcohol 57.7 60 0.0013 32.8 9.2 86 110-205 161-255 (329)
352 KOG2793 Putative N2,N2-dimethy 56.9 71 0.0015 32.5 9.2 90 117-207 87-200 (248)
353 PLN02514 cinnamyl-alcohol dehy 56.9 85 0.0018 32.7 10.3 90 108-205 172-274 (357)
354 cd08295 double_bond_reductase_ 56.5 35 0.00076 35.0 7.3 89 108-205 143-250 (338)
355 PRK14896 ksgA 16S ribosomal RN 56.2 18 0.00039 36.4 4.9 52 316-375 27-82 (258)
356 COG2519 GCD14 tRNA(1-methylade 56.0 29 0.00064 35.3 6.3 42 315-362 91-133 (256)
357 cd08263 Zn_ADH10 Alcohol dehyd 55.8 55 0.0012 34.0 8.7 89 110-205 181-286 (367)
358 cd08279 Zn_ADH_class_III Class 55.2 61 0.0013 33.7 8.9 89 110-205 176-281 (363)
359 PRK01747 mnmC bifunctional tRN 55.1 22 0.00049 40.6 6.1 48 156-205 153-205 (662)
360 TIGR00438 rrmJ cell division p 55.0 26 0.00056 33.2 5.6 49 317-375 31-79 (188)
361 PF13679 Methyltransf_32: Meth 53.6 14 0.00031 33.5 3.4 45 316-362 23-67 (141)
362 KOG0822 Protein kinase inhibit 53.6 43 0.00094 37.6 7.5 104 100-205 348-477 (649)
363 cd08278 benzyl_alcohol_DH Benz 53.3 39 0.00085 35.2 7.1 89 110-205 180-284 (365)
364 cd08301 alcohol_DH_plants Plan 53.1 33 0.00071 35.8 6.5 89 110-205 181-288 (369)
365 cd08293 PTGR2 Prostaglandin re 52.6 37 0.0008 34.7 6.7 90 108-205 144-253 (345)
366 COG0116 Predicted N6-adenine-s 52.6 78 0.0017 34.2 9.1 116 92-207 164-345 (381)
367 KOG3201 Uncharacterized conser 51.7 14 0.0003 35.5 3.0 53 164-218 99-151 (201)
368 PF10354 DUF2431: Domain of un 51.4 64 0.0014 30.5 7.6 47 163-212 70-131 (166)
369 KOG3178 Hydroxyindole-O-methyl 51.1 10 0.00022 40.1 2.3 58 293-360 151-211 (342)
370 PF05175 MTS: Methyltransferas 51.0 29 0.00062 32.4 5.1 52 318-375 31-88 (170)
371 COG2384 Predicted SAM-dependen 50.9 85 0.0018 31.5 8.5 128 114-250 14-159 (226)
372 PF08704 GCD14: tRNA methyltra 50.8 14 0.00031 37.4 3.1 55 315-375 37-99 (247)
373 PF02390 Methyltransf_4: Putat 50.2 34 0.00073 33.1 5.6 126 317-469 16-156 (195)
374 PRK14121 tRNA (guanine-N(7)-)- 50.2 1.7E+02 0.0036 31.8 11.3 54 317-376 121-180 (390)
375 cd05279 Zn_ADH1 Liver alcohol 49.3 65 0.0014 33.6 8.0 91 108-205 175-284 (365)
376 PTZ00146 fibrillarin; Provisio 48.8 28 0.0006 36.2 5.0 56 314-374 128-187 (293)
377 cd08245 CAD Cinnamyl alcohol d 48.8 1.4E+02 0.0031 30.1 10.2 87 112-206 158-256 (330)
378 PF08242 Methyltransf_12: Meth 48.7 15 0.00032 30.6 2.5 34 323-362 1-34 (99)
379 PRK03612 spermidine synthase; 48.6 1.7E+02 0.0038 32.7 11.6 39 321-365 300-338 (521)
380 cd08296 CAD_like Cinnamyl alco 48.5 63 0.0014 33.0 7.6 86 113-206 160-259 (333)
381 COG4123 Predicted O-methyltran 47.5 38 0.00081 34.4 5.6 38 319-362 45-82 (248)
382 cd08242 MDR_like Medium chain 47.1 1.5E+02 0.0033 29.7 10.1 87 109-204 148-243 (319)
383 PRK08317 hypothetical protein; 46.9 38 0.00081 32.3 5.4 41 316-362 17-58 (241)
384 COG0286 HsdM Type I restrictio 46.6 1.2E+02 0.0026 33.7 9.9 94 115-209 185-329 (489)
385 PRK10083 putative oxidoreducta 46.6 35 0.00077 34.7 5.4 91 108-205 152-258 (339)
386 cd08255 2-desacetyl-2-hydroxye 46.6 56 0.0012 32.1 6.7 88 111-205 92-189 (277)
387 TIGR02819 fdhA_non_GSH formald 46.2 77 0.0017 33.8 8.1 93 112-205 181-298 (393)
388 TIGR00080 pimt protein-L-isoas 46.1 40 0.00088 32.6 5.5 54 317-375 76-135 (215)
389 cd08236 sugar_DH NAD(P)-depend 45.9 50 0.0011 33.7 6.4 87 112-205 155-257 (343)
390 PRK11524 putative methyltransf 45.7 36 0.00077 34.8 5.2 46 102-149 195-240 (284)
391 cd05281 TDH Threonine dehydrog 45.3 77 0.0017 32.4 7.7 85 114-205 161-261 (341)
392 TIGR03587 Pse_Me-ase pseudamin 45.2 31 0.00068 33.5 4.5 50 319-374 44-94 (204)
393 PRK00377 cbiT cobalt-precorrin 45.1 29 0.00063 33.2 4.2 42 315-362 37-79 (198)
394 TIGR03201 dearomat_had 6-hydro 45.0 51 0.0011 34.1 6.4 37 112-149 162-200 (349)
395 cd08265 Zn_ADH3 Alcohol dehydr 44.7 1.6E+02 0.0036 30.9 10.2 87 112-205 199-306 (384)
396 PLN02702 L-idonate 5-dehydroge 44.6 2.4E+02 0.0052 29.2 11.4 88 111-205 176-284 (364)
397 PF08003 Methyltransf_9: Prote 44.4 45 0.00096 35.0 5.6 37 319-362 116-152 (315)
398 cd05289 MDR_like_2 alcohol deh 43.9 2.7E+02 0.0059 27.1 11.2 88 110-206 138-238 (309)
399 PRK13699 putative methylase; P 43.7 43 0.00093 33.3 5.3 46 102-149 150-195 (227)
400 KOG2671 Putative RNA methylase 43.6 24 0.00052 37.6 3.5 77 110-196 202-303 (421)
401 PLN02178 cinnamyl-alcohol dehy 43.2 1.1E+02 0.0023 32.5 8.5 82 115-205 177-272 (375)
402 cd08286 FDH_like_ADH2 formalde 42.7 2.2E+02 0.0047 29.1 10.5 88 111-205 161-265 (345)
403 PTZ00075 Adenosylhomocysteinas 42.1 42 0.00092 37.2 5.4 95 103-205 239-340 (476)
404 PF05430 Methyltransf_30: S-ad 41.8 26 0.00057 31.6 3.1 38 167-206 49-90 (124)
405 cd08238 sorbose_phosphate_red 41.4 1.3E+02 0.0027 32.2 8.8 88 112-206 171-288 (410)
406 PRK14103 trans-aconitate 2-met 41.2 38 0.00082 33.7 4.5 52 316-374 27-78 (255)
407 cd08261 Zn_ADH7 Alcohol dehydr 40.5 1.6E+02 0.0034 29.9 9.1 87 111-205 154-257 (337)
408 TIGR00692 tdh L-threonine 3-de 40.0 1.1E+02 0.0025 31.1 8.0 86 113-205 158-260 (340)
409 PF13659 Methyltransf_26: Meth 40.0 39 0.00084 28.7 3.9 36 320-362 2-37 (117)
410 PF06460 NSP13: Coronavirus NS 39.1 1.4E+02 0.0031 30.8 8.1 110 97-207 41-170 (299)
411 PRK03522 rumB 23S rRNA methylu 39.0 2E+02 0.0044 29.7 9.7 36 319-362 174-209 (315)
412 PF05891 Methyltransf_PK: AdoM 38.5 30 0.00065 34.5 3.2 40 316-363 53-93 (218)
413 PF06962 rRNA_methylase: Putat 38.2 37 0.0008 31.5 3.6 68 167-234 45-128 (140)
414 PRK13944 protein-L-isoaspartat 38.1 42 0.00091 32.4 4.2 41 317-362 71-111 (205)
415 TIGR02752 MenG_heptapren 2-hep 37.8 69 0.0015 31.0 5.7 41 316-362 43-84 (231)
416 PRK06202 hypothetical protein; 37.7 45 0.00098 32.6 4.4 45 317-363 59-103 (232)
417 PRK11760 putative 23S rRNA C24 37.6 78 0.0017 33.9 6.3 51 316-375 209-259 (357)
418 TIGR00006 S-adenosyl-methyltra 37.6 52 0.0011 34.4 4.9 48 102-149 6-54 (305)
419 PRK08306 dipicolinate synthase 37.3 1.6E+02 0.0035 30.4 8.5 83 116-206 151-241 (296)
420 cd08260 Zn_ADH6 Alcohol dehydr 36.5 1.4E+02 0.0031 30.4 8.0 88 110-205 159-263 (345)
421 KOG1562 Spermidine synthase [A 36.1 62 0.0013 33.9 5.1 90 114-206 119-236 (337)
422 PF13489 Methyltransf_23: Meth 35.9 49 0.0011 29.4 4.0 40 316-363 20-59 (161)
423 cd08299 alcohol_DH_class_I_II_ 35.8 1.4E+02 0.0031 31.3 8.0 41 108-148 182-224 (373)
424 PF03686 UPF0146: Uncharacteri 35.7 1.1E+02 0.0025 27.9 6.2 84 116-206 13-102 (127)
425 PF11899 DUF3419: Protein of u 35.7 42 0.0009 36.2 4.0 51 114-165 33-86 (380)
426 cd08274 MDR9 Medium chain dehy 35.7 1.2E+02 0.0026 30.9 7.3 87 110-205 171-272 (350)
427 PF01135 PCMT: Protein-L-isoas 35.4 40 0.00087 33.1 3.6 54 316-375 70-130 (209)
428 PLN03033 2-dehydro-3-deoxyphos 35.2 54 0.0012 34.0 4.5 55 451-509 216-270 (290)
429 KOG2651 rRNA adenine N-6-methy 35.2 77 0.0017 34.4 5.7 49 97-148 137-185 (476)
430 PF05971 Methyltransf_10: Prot 35.0 1.6E+02 0.0036 30.7 8.1 63 117-181 103-189 (299)
431 PF08241 Methyltransf_11: Meth 34.3 43 0.00092 26.7 3.1 34 323-363 1-34 (95)
432 PRK12457 2-dehydro-3-deoxyphos 34.3 58 0.0013 33.7 4.6 55 451-509 213-267 (281)
433 PF11312 DUF3115: Protein of u 33.9 72 0.0016 33.5 5.2 18 118-135 88-105 (315)
434 KOG3010 Methyltransferase [Gen 33.8 30 0.00065 35.2 2.4 47 321-375 36-82 (261)
435 KOG1709 Guanidinoacetate methy 33.6 62 0.0014 32.6 4.5 77 283-374 70-155 (271)
436 PRK00811 spermidine synthase; 33.0 1.3E+02 0.0027 30.8 6.9 38 318-362 77-114 (283)
437 cd08262 Zn_ADH8 Alcohol dehydr 32.9 3.1E+02 0.0068 27.7 9.9 89 110-205 155-263 (341)
438 PF08541 ACP_syn_III_C: 3-Oxoa 32.6 33 0.00071 28.4 2.1 29 102-130 54-82 (90)
439 COG2263 Predicted RNA methylas 32.5 65 0.0014 31.6 4.3 57 318-382 45-107 (198)
440 cd05283 CAD1 Cinnamyl alcohol 32.5 5.1E+02 0.011 26.3 11.4 84 114-205 167-262 (337)
441 cd08243 quinone_oxidoreductase 31.6 2.2E+02 0.0048 28.1 8.3 86 109-205 135-237 (320)
442 PF09857 DUF2084: Uncharacteri 31.5 91 0.002 26.5 4.5 53 447-512 1-59 (85)
443 cd08284 FDH_like_2 Glutathione 31.4 1E+02 0.0022 31.3 6.0 86 113-205 164-265 (344)
444 TIGR00518 alaDH alanine dehydr 31.1 43 0.00094 35.7 3.2 88 116-205 166-266 (370)
445 cd08256 Zn_ADH2 Alcohol dehydr 30.8 3.1E+02 0.0068 28.0 9.5 88 111-205 169-273 (350)
446 PRK15451 tRNA cmo(5)U34 methyl 30.1 62 0.0013 32.1 4.0 39 318-362 56-96 (247)
447 TIGR01362 KDO8P_synth 3-deoxy- 30.1 76 0.0016 32.5 4.6 55 451-509 197-251 (258)
448 PRK15068 tRNA mo(5)U34 methylt 29.9 96 0.0021 32.4 5.5 51 318-375 122-179 (322)
449 cd08282 PFDH_like Pseudomonas 29.6 2E+02 0.0044 30.0 8.0 95 111-205 171-284 (375)
450 PRK05396 tdh L-threonine 3-deh 29.6 2.4E+02 0.0053 28.7 8.4 85 114-205 161-262 (341)
451 PRK05198 2-dehydro-3-deoxyphos 29.4 78 0.0017 32.5 4.5 55 451-509 205-259 (264)
452 COG1189 Predicted rRNA methyla 29.3 1.2E+02 0.0025 30.9 5.6 51 318-375 79-130 (245)
453 TIGR00537 hemK_rel_arch HemK-r 29.3 56 0.0012 30.5 3.3 36 319-362 20-55 (179)
454 cd08287 FDH_like_ADH3 formalde 28.8 2.1E+02 0.0046 29.1 7.8 86 112-205 164-267 (345)
455 TIGR02085 meth_trns_rumB 23S r 28.1 2.8E+02 0.006 29.6 8.7 35 320-362 235-269 (374)
456 COG0686 Ald Alanine dehydrogen 28.1 97 0.0021 32.9 5.0 93 117-210 168-273 (371)
457 TIGR02081 metW methionine bios 28.1 85 0.0018 29.7 4.4 49 318-374 13-61 (194)
458 PRK00312 pcm protein-L-isoaspa 28.0 1.2E+02 0.0026 29.2 5.5 39 316-362 76-114 (212)
459 PRK13943 protein-L-isoaspartat 27.9 1.1E+02 0.0024 32.2 5.5 55 316-375 78-138 (322)
460 PF01861 DUF43: Protein of unk 27.7 2.8E+02 0.006 28.2 8.0 92 116-211 44-154 (243)
461 TIGR01934 MenG_MenH_UbiE ubiqu 27.4 74 0.0016 30.1 3.9 41 318-363 39-79 (223)
462 PTZ00098 phosphoethanolamine N 27.2 82 0.0018 31.7 4.3 42 314-362 48-89 (263)
463 PF02475 Met_10: Met-10+ like- 27.1 69 0.0015 31.4 3.6 43 316-364 99-141 (200)
464 KOG1098 Putative SAM-dependent 27.0 83 0.0018 36.1 4.5 94 111-206 39-158 (780)
465 COG3510 CmcI Cephalosporin hyd 26.9 4.6E+02 0.01 26.1 9.0 113 316-478 68-187 (237)
466 PHA03412 putative methyltransf 26.7 76 0.0016 32.2 3.9 54 319-375 50-104 (241)
467 PF01535 PPR: PPR repeat; Int 26.4 56 0.0012 20.6 2.0 16 497-512 16-31 (31)
468 COG1255 Uncharacterized protei 26.3 1.2E+02 0.0026 27.6 4.6 80 118-205 15-101 (129)
469 PF00891 Methyltransf_2: O-met 26.1 1E+02 0.0022 30.2 4.7 51 318-375 100-150 (241)
470 PRK05708 2-dehydropantoate 2-r 25.7 3E+02 0.0064 28.3 8.2 83 118-205 3-103 (305)
471 TIGR00740 methyltransferase, p 25.4 92 0.002 30.5 4.2 41 318-362 53-93 (239)
472 COG0604 Qor NADPH:quinone redu 25.3 2.9E+02 0.0062 28.9 8.1 107 91-206 114-241 (326)
473 PRK14902 16S rRNA methyltransf 25.2 1.3E+02 0.0028 32.8 5.6 53 317-375 249-308 (444)
474 TIGR00446 nop2p NOL1/NOP2/sun 25.1 1.2E+02 0.0027 30.5 5.2 54 317-375 70-129 (264)
475 PRK13687 hypothetical protein; 24.9 1.4E+02 0.003 25.4 4.4 52 447-511 1-58 (85)
476 PF00107 ADH_zinc_N: Zinc-bind 24.9 1.5E+02 0.0033 25.5 5.1 35 165-206 55-89 (130)
477 TIGR00452 methyltransferase, p 24.8 1.3E+02 0.0029 31.4 5.4 39 316-361 119-157 (314)
478 COG4301 Uncharacterized conser 24.2 8.2E+02 0.018 25.4 11.3 92 115-208 77-195 (321)
479 PRK15001 SAM-dependent 23S rib 24.0 75 0.0016 34.2 3.5 37 320-362 230-266 (378)
480 cd08250 Mgc45594_like Mgc45594 23.6 5.5E+02 0.012 25.7 9.7 89 108-205 131-236 (329)
481 PF09445 Methyltransf_15: RNA 23.6 80 0.0017 30.0 3.2 48 320-375 1-55 (163)
482 TIGR00095 RNA methyltransferas 23.5 6.5E+02 0.014 24.0 10.8 37 319-362 50-86 (189)
483 cd08292 ETR_like_2 2-enoyl thi 23.4 4.7E+02 0.01 26.0 9.1 85 112-205 135-237 (324)
484 cd08258 Zn_ADH4 Alcohol dehydr 23.3 5.3E+02 0.012 25.9 9.5 89 108-205 156-263 (306)
485 TIGR00756 PPR pentatricopeptid 23.3 82 0.0018 20.1 2.4 19 496-514 15-33 (35)
486 COG1062 AdhC Zn-dependent alco 23.2 3.4E+02 0.0073 29.2 7.9 88 111-205 180-284 (366)
487 cd08264 Zn_ADH_like2 Alcohol d 23.1 2.8E+02 0.0061 27.8 7.4 82 112-205 158-252 (325)
488 PF10237 N6-adenineMlase: Prob 23.0 6.5E+02 0.014 23.8 10.4 87 115-207 24-124 (162)
489 TIGR02072 BioC biotin biosynth 22.7 86 0.0019 29.9 3.4 39 319-363 35-73 (240)
490 PF13649 Methyltransf_25: Meth 22.6 1.2E+02 0.0026 25.2 3.9 38 322-362 1-38 (101)
491 cd05286 QOR2 Quinone oxidoredu 22.6 3.7E+02 0.0079 26.2 8.0 89 108-205 128-234 (320)
492 TIGR03534 RF_mod_PrmC protein- 22.5 1.4E+02 0.0031 29.0 4.9 51 319-375 88-144 (251)
493 cd05288 PGDH Prostaglandin deh 22.5 2.9E+02 0.0062 27.7 7.3 87 110-205 139-243 (329)
494 cd03768 SR_ResInv Serine Recom 22.4 1.7E+02 0.0037 25.3 5.0 48 453-515 41-88 (126)
495 COG0293 FtsJ 23S rRNA methylas 22.1 1.7E+02 0.0037 28.9 5.3 50 316-375 43-92 (205)
496 cd08246 crotonyl_coA_red croto 22.1 2.6E+02 0.0057 29.3 7.2 30 168-205 285-314 (393)
497 PF04989 CmcI: Cephalosporin h 21.8 2E+02 0.0044 28.4 5.8 54 319-374 33-91 (206)
498 TIGR00479 rumA 23S rRNA (uraci 21.6 1.4E+02 0.0031 32.1 5.2 38 317-362 291-328 (431)
499 smart00857 Resolvase Resolvase 21.6 1.8E+02 0.0039 25.8 5.1 71 428-515 23-99 (148)
500 cd08269 Zn_ADH9 Alcohol dehydr 21.5 7.3E+02 0.016 24.4 10.0 88 111-205 124-228 (312)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.79 E-value=3.9e-19 Score=176.11 Aligned_cols=112 Identities=25% Similarity=0.346 Sum_probs=91.0
Q ss_pred ccCChhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC---------------C
Q 010086 88 MYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS---------------K 151 (518)
Q Consensus 88 ~w~s~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~---------------~ 151 (518)
+...+.||+.. ++.-.+.+|.+|||||||||..+..+++ .|.++|+|+|+|++ .
T Consensus 33 ~g~~~~Wr~~~----------i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~ 102 (238)
T COG2226 33 FGLHRLWRRAL----------ISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN 102 (238)
T ss_pred CcchHHHHHHH----------HHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc
Confidence 34567777742 2222345899999999999999988887 45679999999842 1
Q ss_pred CcEEeccCCCCCCCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE-ecCCC
Q 010086 152 PLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH-VRAKD 210 (518)
Q Consensus 152 ~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~-~~~~~ 210 (518)
..++.+|+++|||+|+|||+|++..+ |++++|+.++++|++|||||||++++. ++...
T Consensus 103 i~fv~~dAe~LPf~D~sFD~vt~~fg-lrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 103 VEFVVGDAENLPFPDNSFDAVTISFG-LRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred eEEEEechhhCCCCCCccCEEEeeeh-hhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 23579999999999999999999998 999999999999999999999998775 55443
No 2
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=99.75 E-value=6.1e-18 Score=153.26 Aligned_cols=137 Identities=25% Similarity=0.296 Sum_probs=104.2
Q ss_pred EEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhc------cCCceEEEeeceeecCCceEEEecCCCCc
Q 010086 321 VYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYK------VKKKVKLLPYAAWVRNETLSFQINHDPDK 394 (518)
Q Consensus 321 V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~------~~~~V~~~~~Av~~~~~tl~f~~~~~~~~ 394 (518)
+++|+||| .|. .+.||.+.+|.. .||+|||||...+.++ ..++|++++.|+|.++|+++|+.....+
T Consensus 1 ~vlDiGa~-~G~-~~~~~~~~~~~~----~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~~g~~~~~~~~~~~- 73 (143)
T TIGR01444 1 VVIDVGAN-IGD-TSLYFARKGAEG----RVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDRDGELEFNVSDDDT- 73 (143)
T ss_pred CEEEccCC-ccH-HHHHHHHhCCCC----EEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCCCCeEEEEECCCCC-
Confidence 58999999 685 557999888854 7999999999766433 3367999999999999999998775432
Q ss_pred chhhcccCCccccccccCCCCCCCCCcceeecccHHHHHhhcCCCCCeEEEEeeccchhhhhHHHHHhcCCcccccEEEE
Q 010086 395 EVVVKGRGMGRIQPVQSLSDGGFDGEVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEIFL 474 (518)
Q Consensus 395 ~~~~~~~g~~~i~p~~~~~~~~~~g~~~~v~~vd~s~wl~~~v~~~D~VVlKMDIEGaE~~vL~~l~~~g~i~~IDeLfv 474 (518)
+.+++.+.... ......+|+.+.+.+|+++.- ...+.+|||||||+|+++|+.+.+. ..+.++.+++
T Consensus 74 -------~~s~~~~~~~~----~~~~~~~v~~~~Ld~~l~~~~-~~~i~~lKiDiEG~E~~vL~g~~~~-l~~~~~~i~~ 140 (143)
T TIGR01444 74 -------GNSSLLPTPDA----DRESKVEVEVVTLDDLVEEFG-LDKVDLLKIDVEGAELEVLRGAKET-LLRKRPGIVL 140 (143)
T ss_pred -------CceeeecCCCc----CCCceEEEEEEEHHHHHHHcC-CCCCCEEEEeCCCchHHHHhChHHH-HHHhCCeEEE
Confidence 12334432211 123446799999999999872 2334479999999999999999643 2389999999
Q ss_pred Eee
Q 010086 475 ECH 477 (518)
Q Consensus 475 E~H 477 (518)
|+|
T Consensus 141 E~h 143 (143)
T TIGR01444 141 EVH 143 (143)
T ss_pred EeC
Confidence 999
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.75 E-value=1.9e-18 Score=171.36 Aligned_cols=140 Identities=20% Similarity=0.235 Sum_probs=71.7
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcC
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGG 176 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~ 176 (518)
.+++.+|||||||||..+..+.+. + ..+|+|+|+|+. ...++++|+++|||+|+|||+|++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 467899999999999999887663 3 369999999841 12367899999999999999999999
Q ss_pred ceeeccCChHHHHHHHHhcccCCcEEEEE-ecCCCccCchhHhhhccCccEEEEeccCCCCCCccceeEEEEeecccccc
Q 010086 177 ARLEKASKPLDFASEIVRTLKPEGFAVVH-VRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSSLPYIREIVLKKESDLIL 255 (518)
Q Consensus 177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~-~~~~~~~s~~~~~~lf~~~~~v~~~~v~~~~~~~p~~~~vv~kK~~~~~~ 255 (518)
+ +++++|+.++++|++|||||||++++. ++..+. ..+..+++ .|.+.+ +|.+..+..++. .
T Consensus 125 g-lrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~---~~~~~~~~----~y~~~i------lP~~g~l~~~~~--~-- 186 (233)
T PF01209_consen 125 G-LRNFPDRERALREMYRVLKPGGRLVILEFSKPRN---PLLRALYK----FYFKYI------LPLIGRLLSGDR--E-- 186 (233)
T ss_dssp --GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SS---HHHHHHHH----H----------------------------
T ss_pred h-HHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCC---chhhceee----eeeccc------cccccccccccc--c--
Confidence 8 999999999999999999999998876 444332 12222333 344333 555555555432 1
Q ss_pred ccccCCCCCccccCCCCch
Q 010086 256 GHRENLPDGNVANKCSVPG 274 (518)
Q Consensus 256 ~~~~~~~~~~~~~~C~~~~ 274 (518)
+..|-..++..+..++
T Consensus 187 ---~Y~yL~~Si~~f~~~~ 202 (233)
T PF01209_consen 187 ---AYRYLPESIRRFPSPE 202 (233)
T ss_dssp -------------------
T ss_pred ---cccccccccccccccc
Confidence 2344455666655443
No 4
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.68 E-value=9.8e-17 Score=133.32 Aligned_cols=83 Identities=30% Similarity=0.406 Sum_probs=70.6
Q ss_pred EEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------C--CcEEeccCCCCCCCCCceeEEEEcCceeeccCChHHH
Q 010086 121 LCVETQYGQDVFALKEIGVEDSIGIFKKSS----------K--PLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDF 188 (518)
Q Consensus 121 LDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------~--~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp~~~ 188 (518)
||+|||+|..+..|.+.+..+++|+|+++. . ..++.++.+++||+|++||+|++..+ ++|++++.++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~-~~~~~~~~~~ 79 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSV-LHHLEDPEAA 79 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESH-GGGSSHHHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccc-eeeccCHHHH
Confidence 899999999999998885589999999841 1 12678999999999999999999998 9999999999
Q ss_pred HHHHHhcccCCcEEEE
Q 010086 189 ASEIVRTLKPEGFAVV 204 (518)
Q Consensus 189 l~Ei~RVLKPGG~lvi 204 (518)
++|+.|+|||||++++
T Consensus 80 l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 80 LREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHEEEEEEEEE
T ss_pred HHHHHHHcCcCeEEeC
Confidence 9999999999999986
No 5
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.60 E-value=5.7e-15 Score=147.45 Aligned_cols=118 Identities=14% Similarity=0.098 Sum_probs=98.6
Q ss_pred ccCChhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC--------CCcEEecc
Q 010086 88 MYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS--------KPLVISGE 158 (518)
Q Consensus 88 ~w~s~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~--------~~l~~~~d 158 (518)
.|++..|.+...+-...+.++++.....++.+|||||||+|..+..+++.. ..+|+|+|+|+. ...++.+|
T Consensus 1 ~w~~~~y~~~~~~~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d 80 (255)
T PRK14103 1 MWDPDVYLAFADHRGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGD 80 (255)
T ss_pred CCCHHHHHHHHhHhhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcC
Confidence 488999988777766777777776666788999999999999998887752 368999999852 23456889
Q ss_pred CCCCCCCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086 159 GHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 159 a~~LPf~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
+++++ ++++||+|+|..+ |||++++.++++++.|+|||||.+++.+.
T Consensus 81 ~~~~~-~~~~fD~v~~~~~-l~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 81 VRDWK-PKPDTDVVVSNAA-LQWVPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred hhhCC-CCCCceEEEEehh-hhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 88875 6789999999997 99999999999999999999999998753
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.57 E-value=1.2e-14 Score=146.32 Aligned_cols=95 Identities=25% Similarity=0.293 Sum_probs=80.6
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC------------------CCcEEeccCCCCCCCCCceeEEE
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS------------------KPLVISGEGHRIPFDGNTFDFVF 173 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~------------------~~l~~~~da~~LPf~D~SFD~V~ 173 (518)
++++.+|||||||||..+..+.+. + ..+|+|+|+|+. ...++++|++++||++++||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 567899999999999998877764 3 358999999841 11256899999999999999999
Q ss_pred EcCceeeccCChHHHHHHHHhcccCCcEEEEEecCC
Q 010086 174 VGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAK 209 (518)
Q Consensus 174 s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~ 209 (518)
+..+ +||+++|.++++|+.|+|||||.+++.....
T Consensus 151 ~~~~-l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 151 MGYG-LRNVVDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred Eecc-cccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 9987 9999999999999999999999998875433
No 7
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.55 E-value=3.8e-14 Score=139.85 Aligned_cols=94 Identities=18% Similarity=0.220 Sum_probs=77.8
Q ss_pred CCCCeEEEEcCCCCHhHHHHHh-cCC------CcEEEEecCCC-----------------C-CcEEeccCCCCCCCCCce
Q 010086 115 SQSAKSLCVETQYGQDVFALKE-IGV------EDSIGIFKKSS-----------------K-PLVISGEGHRIPFDGNTF 169 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~-~g~------~~v~gID~s~~-----------------~-~l~~~~da~~LPf~D~SF 169 (518)
.++.++|||+||||..+..+.+ .+. .+|+..|+++. + ..++.+|++.|||+|++|
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 4578999999999999865543 222 68999999841 0 124678999999999999
Q ss_pred eEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE-ecCC
Q 010086 170 DFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH-VRAK 209 (518)
Q Consensus 170 D~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~-~~~~ 209 (518)
|..++.+. ++++.+++++++|++|||||||++.+. +++-
T Consensus 179 D~yTiafG-IRN~th~~k~l~EAYRVLKpGGrf~cLeFskv 218 (296)
T KOG1540|consen 179 DAYTIAFG-IRNVTHIQKALREAYRVLKPGGRFSCLEFSKV 218 (296)
T ss_pred eeEEEecc-eecCCCHHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 99999997 999999999999999999999998765 5543
No 8
>PRK05785 hypothetical protein; Provisional
Probab=99.54 E-value=4.3e-14 Score=139.43 Aligned_cols=92 Identities=16% Similarity=0.204 Sum_probs=76.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------CCcEEeccCCCCCCCCCceeEEEEcCceeeccCChHH
Q 010086 115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLD 187 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp~~ 187 (518)
.++.+|||||||||..+..+++....+|+|+|+|+. ....++++++++||+|++||+|++..+ ++|++|+.+
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~-l~~~~d~~~ 128 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFA-LHASDNIEK 128 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecCh-hhccCCHHH
Confidence 357899999999999998888762259999999852 123568999999999999999999997 999999999
Q ss_pred HHHHHHhcccCCcEEEEEecC
Q 010086 188 FASEIVRTLKPEGFAVVHVRA 208 (518)
Q Consensus 188 ~l~Ei~RVLKPGG~lvi~~~~ 208 (518)
+++|++|||||. ..++.++.
T Consensus 129 ~l~e~~RvLkp~-~~ile~~~ 148 (226)
T PRK05785 129 VIAEFTRVSRKQ-VGFIAMGK 148 (226)
T ss_pred HHHHHHHHhcCc-eEEEEeCC
Confidence 999999999994 33444443
No 9
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.54 E-value=6.1e-14 Score=139.39 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=79.8
Q ss_pred CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------CCcEEeccCCCCCCCCCceeEEEEcCceeeccCC
Q 010086 115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKASK 184 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~d 184 (518)
.++.+|||+|||+|..+..|.+.| .+++|+|+++. ...++.+|++.+||++++||+|+|..+ ++|..+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~-l~~~~d 118 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLA-VQWCGN 118 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECch-hhhcCC
Confidence 456899999999999998888776 79999999852 123578999999999999999999987 999999
Q ss_pred hHHHHHHHHhcccCCcEEEEEec
Q 010086 185 PLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 185 p~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
+..++.|+.|+|||||.+++.+.
T Consensus 119 ~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 119 LSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeC
Confidence 99999999999999999998753
No 10
>PLN02244 tocopherol O-methyltransferase
Probab=99.53 E-value=5.2e-14 Score=146.84 Aligned_cols=91 Identities=19% Similarity=0.221 Sum_probs=79.4
Q ss_pred CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086 115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGAR 178 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~~ 178 (518)
+++.+|||||||+|..+..|++....+|+|||+++. ...++.+|+.++||+|++||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~- 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES- 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc-
Confidence 678899999999999998888752369999999841 123568899999999999999999987
Q ss_pred eeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086 179 LEKASKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 179 l~~~~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
++|++++.++++|+.|+|||||.+++..
T Consensus 196 ~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 196 GEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred hhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999999999999999999999998875
No 11
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=99.51 E-value=1.2e-14 Score=133.44 Aligned_cols=153 Identities=27% Similarity=0.378 Sum_probs=62.4
Q ss_pred EeCCCCCC--cchhhhhh-hhCCCCCcceEEEEEcCCccchHhhcc--------C-CceEEEeeceeecCCceEEEecCC
Q 010086 324 DVGARSYG--SSIGSWFK-KQYPKQNKTFDVYAIEADKTFHEEYKV--------K-KKVKLLPYAAWVRNETLSFQINHD 391 (518)
Q Consensus 324 D~GAn~~g--~sv~~~F~-~~YP~~~~~f~V~afE~np~~~~~~~~--------~-~~V~~~~~Av~~~~~tl~f~~~~~ 391 (518)
||||| +| ++...++. +..| +..||+|||||...+.+.. . ..+++++.++|..+....+....+
T Consensus 1 DvGA~-~G~~~~~~~~~~~~~~~----~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (167)
T PF05050_consen 1 DVGAN-IGFWSSTVYFLEKKCGP----GGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAVSDGSSFFFAEGDPD 75 (167)
T ss_dssp EES-T-TS--HHHHHHHHHHTS------SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-SEE-SS-EEEE----
T ss_pred CcccC-CChhHHHHHHHHHHcCC----CCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeecCCCceeEEeeecCC
Confidence 89999 68 66533332 3444 3489999999997654321 1 348899999988334333322222
Q ss_pred CCcchhhcccCCccccccccCCCCCCCCCcceeecccHHHHHhhcCCCCCeEEEEeeccchhhhhHHHHHhcCCc--ccc
Q 010086 392 PDKEVVVKGRGMGRIQPVQSLSDGGFDGEVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETGAI--CLI 469 (518)
Q Consensus 392 ~~~~~~~~~~g~~~i~p~~~~~~~~~~g~~~~v~~vd~s~wl~~~v~~~D~VVlKMDIEGaE~~vL~~l~~~g~i--~~I 469 (518)
.... .+..+ .......+|+++.+.+++++.....| +|||||||+|+++|+.+.+ .+ +.+
T Consensus 76 ~~~~--------~~~~~-------~~~~~~~~v~~~~ld~~~~~~~~~id--~lkiDiEG~E~~vL~g~~~--~l~~~~~ 136 (167)
T PF05050_consen 76 GSSS--------STVEP-------NDEGGEVEVPVITLDDILEENIPRID--LLKIDIEGAELEVLKGARE--LLKKCRP 136 (167)
T ss_dssp -------------------------------EEEEE-HHHH-SS-----S--EEEE--SS-HHHHHHTTHH--HHHHH--
T ss_pred CCce--------eeecc-------cCCCceEEEEEEEhHHHHhhcCCccE--EEEEeCCCCHHHHhhCCcc--cHhHcCc
Confidence 1110 11111 01245577999999999887733334 7999999999999987533 34 457
Q ss_pred cEEEEEeecccccccCCCCCCCcccccHHHHHHHHHHHhhCCeee
Q 010086 470 DEIFLECHYNRWQRCCPGQRSPKYKKTYEQCLELFTSLRQNGVLV 514 (518)
Q Consensus 470 DeLfvE~H~~~~~~~~~g~~~~~~~~~~~~cl~L~~~LR~~Gv~v 514 (518)
..+ +|+|... .. . + ....+++.-|++.|+.+
T Consensus 137 ~~i-~E~~~~~-~~----~-----~---~~~~~i~~~L~~~Gy~~ 167 (167)
T PF05050_consen 137 KVI-VEIHHNH-YG----R-----Q---ESFREILDFLRDHGYRL 167 (167)
T ss_dssp EEE-EE--S------------------------------------
T ss_pred EEE-EEEcCCc-cc----c-----c---cccccccccccccccCC
Confidence 778 9999864 11 1 0 24455777788888753
No 12
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.50 E-value=3.8e-14 Score=129.42 Aligned_cols=104 Identities=22% Similarity=0.395 Sum_probs=82.8
Q ss_pred HHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCC-----CcEEeccCCCCCCCCCceeEEEEcC
Q 010086 102 SSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSK-----PLVISGEGHRIPFDGNTFDFVFVGG 176 (518)
Q Consensus 102 ~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~-----~l~~~~da~~LPf~D~SFD~V~s~~ 176 (518)
..++..+... .+++.+|||||||+|..+..+++.|. +++|+|+++.. ......+....++++++||+|+|..
T Consensus 10 ~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (161)
T PF13489_consen 10 ADLLERLLPR--LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICND 86 (161)
T ss_dssp HHHHHHHHTC--TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEES
T ss_pred HHHHHHHhcc--cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHH
Confidence 3444444432 57889999999999999999988885 99999997421 1122334456678899999999999
Q ss_pred ceeeccCChHHHHHHHHhcccCCcEEEEEecCC
Q 010086 177 ARLEKASKPLDFASEIVRTLKPEGFAVVHVRAK 209 (518)
Q Consensus 177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~ 209 (518)
+ |+|++||..+++++.|+|||||++++.+...
T Consensus 87 ~-l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 87 V-LEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp S-GGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred H-HhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 8 9999999999999999999999999987543
No 13
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.48 E-value=1.5e-13 Score=142.52 Aligned_cols=93 Identities=16% Similarity=0.228 Sum_probs=80.7
Q ss_pred CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086 115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGAR 178 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~~ 178 (518)
.++.+|||||||+|..+..|++.| .+|+|||.++. ...++.++++++|+++++||+|++..+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g-~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v- 207 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMG-ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV- 207 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH-
Confidence 357799999999999999998877 69999999841 122457888999999999999999998
Q ss_pred eeccCChHHHHHHHHhcccCCcEEEEEecCC
Q 010086 179 LEKASKPLDFASEIVRTLKPEGFAVVHVRAK 209 (518)
Q Consensus 179 l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~ 209 (518)
++|+.+|..+++|+.|+|||||.+++.+...
T Consensus 208 LeHv~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 208 IEHVANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred HHhcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 9999999999999999999999999986543
No 14
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.46 E-value=4.8e-13 Score=133.35 Aligned_cols=117 Identities=15% Similarity=0.188 Sum_probs=92.2
Q ss_pred cCChhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC----------CCcEEec
Q 010086 89 YTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS----------KPLVISG 157 (518)
Q Consensus 89 w~s~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~----------~~l~~~~ 157 (518)
|+...+.+....-....+++++.-.++++.+|||||||+|..+..+++. +..+++|+|+++. ...++.+
T Consensus 4 w~~~~Y~~~~~~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~ 83 (258)
T PRK01683 4 WNPSLYLKFEDERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEA 83 (258)
T ss_pred CCHHHHHHHHHHhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEEC
Confidence 7877777755443445556666555678899999999999999888764 3468999999842 1235678
Q ss_pred cCCCCCCCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086 158 EGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 158 da~~LPf~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
|+..++ ++++||+|++..+ |||+.++.++++++.|+|||||++++.+.
T Consensus 84 d~~~~~-~~~~fD~v~~~~~-l~~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 84 DIASWQ-PPQALDLIFANAS-LQWLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred chhccC-CCCCccEEEEccC-hhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 887765 5679999999997 99999999999999999999999998753
No 15
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.43 E-value=1.2e-12 Score=141.93 Aligned_cols=89 Identities=16% Similarity=0.160 Sum_probs=74.0
Q ss_pred CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------------CCcEEeccCC--CCCCCCCceeEEEEcCcee
Q 010086 115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------------KPLVISGEGH--RIPFDGNTFDFVFVGGARL 179 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------------~~l~~~~da~--~LPf~D~SFD~V~s~~~~l 179 (518)
.++.+|||||||+|..+..|++.+ .+++|+|+++. ...++++|+. .+||++++||+|++..+ +
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~-l 113 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWL-L 113 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhh-H
Confidence 456799999999999999898775 69999998741 1124567764 57899999999999987 9
Q ss_pred eccCCh--HHHHHHHHhcccCCcEEEEE
Q 010086 180 EKASKP--LDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 180 ~~~~dp--~~~l~Ei~RVLKPGG~lvi~ 205 (518)
+|+.++ ..+++++.|+|||||++++.
T Consensus 114 ~~l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 114 MYLSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 999874 57899999999999999885
No 16
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.41 E-value=2.1e-13 Score=134.29 Aligned_cols=91 Identities=20% Similarity=0.202 Sum_probs=79.0
Q ss_pred CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCCCc--------------EEeccCCCCCCCCCceeEEEEcCceeec
Q 010086 116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSKPL--------------VISGEGHRIPFDGNTFDFVFVGGARLEK 181 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~~l--------------~~~~da~~LPf~D~SFD~V~s~~~~l~~ 181 (518)
+|.+|||||||.|.+++.|++.| .+|+|+|+++.+.. ..+...++|-...++||+|+|..+ ++|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEV-lEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEV-LEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhH-HHc
Confidence 78899999999999999999999 89999999863211 235566777666689999999998 999
Q ss_pred cCChHHHHHHHHhcccCCcEEEEEecC
Q 010086 182 ASKPLDFASEIVRTLKPEGFAVVHVRA 208 (518)
Q Consensus 182 ~~dp~~~l~Ei~RVLKPGG~lvi~~~~ 208 (518)
++||+.+++.+.+.+||||.+++.+-.
T Consensus 137 v~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 137 VPDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 999999999999999999999998644
No 17
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.41 E-value=1.2e-12 Score=131.99 Aligned_cols=97 Identities=20% Similarity=0.205 Sum_probs=79.1
Q ss_pred HHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------------CCcEEeccCCCCCCCCCceeEEEEc
Q 010086 109 ISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------------KPLVISGEGHRIPFDGNTFDFVFVG 175 (518)
Q Consensus 109 ~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------------~~l~~~~da~~LPf~D~SFD~V~s~ 175 (518)
++.-.++++.+|||||||+|..+..+++....+|+|+|+++. ...++.+|+.++||++++||+|++.
T Consensus 45 l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~ 124 (263)
T PTZ00098 45 LSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSR 124 (263)
T ss_pred HHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEh
Confidence 333346889999999999999888776532259999999741 1234578888999999999999998
Q ss_pred CceeeccC--ChHHHHHHHHhcccCCcEEEEEe
Q 010086 176 GARLEKAS--KPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 176 ~~~l~~~~--dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
.+ ++|+. ++..+++++.|+|||||.+++..
T Consensus 125 ~~-l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 125 DA-ILHLSYADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred hh-HHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 86 88876 77899999999999999999874
No 18
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.40 E-value=1.5e-12 Score=127.43 Aligned_cols=93 Identities=26% Similarity=0.374 Sum_probs=79.0
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEc
Q 010086 113 YLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVG 175 (518)
Q Consensus 113 ll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~ 175 (518)
.++++.+|||+|||+|..+..+.+. + ..+++|+|+++. ...++.+|++.+|+++++||+|++.
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 121 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIG 121 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEe
Confidence 4578899999999999999888763 3 358999999731 1234678999999999999999998
Q ss_pred CceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086 176 GARLEKASKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
.+ ++|++++.++++|+.|+|||||.+++..
T Consensus 122 ~~-l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 122 FG-LRNVPDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred cc-cccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence 87 9999999999999999999999988764
No 19
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.40 E-value=1.6e-12 Score=134.23 Aligned_cols=91 Identities=19% Similarity=0.197 Sum_probs=75.8
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCc
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGA 177 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~ 177 (518)
..++.+|||||||+|..+..+...|...|+|||.|+. ...+...+.+++|+. ++||+|+|.++
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv 197 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV 197 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcch
Confidence 3467899999999999988887777668999998751 012345677888875 48999999998
Q ss_pred eeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086 178 RLEKASKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
++|..+|..+++|++|+|||||.+++.+
T Consensus 198 -L~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 198 -LYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred -hhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999999999999999999999999864
No 20
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.38 E-value=2e-12 Score=129.31 Aligned_cols=93 Identities=17% Similarity=0.194 Sum_probs=79.0
Q ss_pred CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCC-CCCCCceeEEEEcCc
Q 010086 115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRI-PFDGNTFDFVFVGGA 177 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~L-Pf~D~SFD~V~s~~~ 177 (518)
.++.+|||+|||+|..+..|++.| .+|+|+|+|+. ...++++++.++ ++++++||+|++..+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 456899999999999999998887 69999999841 112467888777 478899999999998
Q ss_pred eeeccCChHHHHHHHHhcccCCcEEEEEecCC
Q 010086 178 RLEKASKPLDFASEIVRTLKPEGFAVVHVRAK 209 (518)
Q Consensus 178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~ 209 (518)
++|+.+|..+++++.|+|||||++++.....
T Consensus 122 -l~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 122 -LEWVADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred -HHhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 9999999999999999999999998876443
No 21
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.38 E-value=1.8e-12 Score=134.47 Aligned_cols=89 Identities=22% Similarity=0.301 Sum_probs=77.3
Q ss_pred CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCcee
Q 010086 116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGARL 179 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l 179 (518)
++.+|||||||+|..+..+++.|...|+|+|.|+. ...++.++.+++|+ +++||+|+|..+ +
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~v-l 199 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGV-L 199 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECCh-h
Confidence 57899999999999998888887667999998741 12245788899999 889999999998 9
Q ss_pred eccCChHHHHHHHHhcccCCcEEEEEe
Q 010086 180 EKASKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
+|..+|..++++++|+|||||.+++..
T Consensus 200 ~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 200 YHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred hccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999999999999999999998863
No 22
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.37 E-value=3e-12 Score=138.79 Aligned_cols=98 Identities=16% Similarity=0.182 Sum_probs=81.9
Q ss_pred HHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEE
Q 010086 108 LISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVF 173 (518)
Q Consensus 108 L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~ 173 (518)
+++.-.++++.+|||||||+|..+..|++....+++|+|+|+. ...+..+|..++||++++||+|+
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~ 337 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIY 337 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEE
Confidence 4444446778899999999999888777642258999999831 12346789999999999999999
Q ss_pred EcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086 174 VGGARLEKASKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 174 s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
|..+ ++|+.+|.++++|++|+|||||.+++..
T Consensus 338 s~~~-l~h~~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 338 SRDT-ILHIQDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred ECCc-ccccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 9987 9999999999999999999999999874
No 23
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.33 E-value=1.2e-11 Score=119.26 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=83.0
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGAR 178 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~~ 178 (518)
..++.+|||+|||+|..+..|++.| .+|+|+|+|+. ......+|..+++++ ++||+|+|..+
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~- 104 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVV- 104 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecc-
Confidence 3456899999999999999998887 59999999842 112345777777775 57999999987
Q ss_pred eeccC--ChHHHHHHHHhcccCCcEEEE-EecC-CC---------ccCchhHhhhccCccEEEEec
Q 010086 179 LEKAS--KPLDFASEIVRTLKPEGFAVV-HVRA-KD---------EYSFNSFLDLFNSCKLVKSRD 231 (518)
Q Consensus 179 l~~~~--dp~~~l~Ei~RVLKPGG~lvi-~~~~-~~---------~~s~~~~~~lf~~~~~v~~~~ 231 (518)
+||+. +...+++++.|+|||||++++ .... .+ .++...+.++|..+++++..+
T Consensus 105 ~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~ 170 (197)
T PRK11207 105 LMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWEMVKYNE 170 (197)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhCCCeEEEeeC
Confidence 88765 346889999999999998654 3211 11 123344566677777666543
No 24
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.32 E-value=1.4e-11 Score=120.27 Aligned_cols=98 Identities=13% Similarity=-0.012 Sum_probs=75.5
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC----CCcEEeccCCCCC--------CCCCceeEEEEcCc
Q 010086 112 GYLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS----KPLVISGEGHRIP--------FDGNTFDFVFVGGA 177 (518)
Q Consensus 112 gll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~----~~l~~~~da~~LP--------f~D~SFD~V~s~~~ 177 (518)
++++++.+|||||||||..+..+.+. + ...|+|||+++. ...++++|+.+.+ +++++||+|+|..+
T Consensus 47 ~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 47 KLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMA 126 (209)
T ss_pred ccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCC
Confidence 46788999999999999999877664 3 258999999852 1235688888863 78999999999765
Q ss_pred eeeccCCh-----------HHHHHHHHhcccCCcEEEEEecCCC
Q 010086 178 RLEKASKP-----------LDFASEIVRTLKPEGFAVVHVRAKD 210 (518)
Q Consensus 178 ~l~~~~dp-----------~~~l~Ei~RVLKPGG~lvi~~~~~~ 210 (518)
.++..+| ..+++++.|+|||||.+++.+...+
T Consensus 127 -~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~ 169 (209)
T PRK11188 127 -PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE 169 (209)
T ss_pred -CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc
Confidence 4443332 3578999999999999999765443
No 25
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.32 E-value=1.3e-11 Score=118.98 Aligned_cols=114 Identities=11% Similarity=0.194 Sum_probs=83.8
Q ss_pred CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCceee
Q 010086 115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGARLE 180 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~ 180 (518)
.++.+|||+|||+|..+..|++.| .+|+|+|+++. ......+|....+++ ++||+|++..+ |+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~-~~ 105 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVV-FM 105 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEecc-cc
Confidence 346799999999999999998887 69999999842 112234566666664 68999999887 88
Q ss_pred ccCC--hHHHHHHHHhcccCCcEEEEEec-CCC----------ccCchhHhhhccCccEEEEec
Q 010086 181 KASK--PLDFASEIVRTLKPEGFAVVHVR-AKD----------EYSFNSFLDLFNSCKLVKSRD 231 (518)
Q Consensus 181 ~~~d--p~~~l~Ei~RVLKPGG~lvi~~~-~~~----------~~s~~~~~~lf~~~~~v~~~~ 231 (518)
|+.. ....++++.|+|||||++++... ..+ .++...+..+|..+++++...
T Consensus 106 ~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~~~~~~~~e 169 (195)
T TIGR00477 106 FLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYADWELLKYNE 169 (195)
T ss_pred cCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCCCeEEEeec
Confidence 8753 45789999999999998555421 111 134455777788888888765
No 26
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.31 E-value=9.2e-12 Score=129.88 Aligned_cols=91 Identities=19% Similarity=0.221 Sum_probs=77.2
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC------------CCcEEeccCCCCCCCCCceeEEEEcCceee
Q 010086 114 LSQSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS------------KPLVISGEGHRIPFDGNTFDFVFVGGARLE 180 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~ 180 (518)
..++.+|||||||+|..+..+.+ .+..+++|+|+++. ...++.+|++++||++++||+|++..+ ++
T Consensus 111 ~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~-L~ 189 (340)
T PLN02490 111 SDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGS-IE 189 (340)
T ss_pred CCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcCh-hh
Confidence 35678999999999998877765 34468999998741 123568899999999999999999987 99
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEE
Q 010086 181 KASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 181 ~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
|++++.++++|+.|+|||||.+++.
T Consensus 190 ~~~d~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 190 YWPDPQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 9999999999999999999998775
No 27
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.30 E-value=1.9e-11 Score=118.80 Aligned_cols=91 Identities=22% Similarity=0.261 Sum_probs=77.7
Q ss_pred CCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC-----------CCcEEeccCCCCCCCCCceeEEEEcCceeeccC
Q 010086 116 QSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS-----------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKAS 183 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~-----------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~ 183 (518)
.+.+|||+|||+|..+..+.+.+ ..+++|+|+++. ...++.+|..++|+++++||+|++..+ ++|..
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~-l~~~~ 112 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLA-LQWCD 112 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhh-hhhcc
Confidence 45789999999999998887765 357899998741 123567899999999999999999997 99999
Q ss_pred ChHHHHHHHHhcccCCcEEEEEec
Q 010086 184 KPLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 184 dp~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
++..++.++.|+|||||++++...
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeC
Confidence 999999999999999999998753
No 28
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.30 E-value=7.4e-12 Score=115.22 Aligned_cols=91 Identities=23% Similarity=0.389 Sum_probs=76.7
Q ss_pred CCCCeEEEEcCCCCHhHHHHH-hcC-CCcEEEEecCCC--------------C-CcEEeccCCCCC--CCCCceeEEEEc
Q 010086 115 SQSAKSLCVETQYGQDVFALK-EIG-VEDSIGIFKKSS--------------K-PLVISGEGHRIP--FDGNTFDFVFVG 175 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~-~~g-~~~v~gID~s~~--------------~-~l~~~~da~~LP--f~D~SFD~V~s~ 175 (518)
+.+.+|||+|||+|..+..|+ +.+ ..+++|+|+++. + ..+.++|..++| |+ +.||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 467899999999999998888 443 368999999841 1 245789999988 87 999999999
Q ss_pred CceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086 176 GARLEKASKPLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
.+ ++|+.++..+++++.|+|||||++++...
T Consensus 81 ~~-l~~~~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 81 GV-LHHFPDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp ST-GGGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Cc-hhhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 98 99999999999999999999999988754
No 29
>PRK08317 hypothetical protein; Provisional
Probab=99.29 E-value=2.1e-11 Score=118.21 Aligned_cols=98 Identities=23% Similarity=0.297 Sum_probs=81.1
Q ss_pred HHHcCCCCCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeE
Q 010086 108 LISEGYLSQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDF 171 (518)
Q Consensus 108 L~~~gll~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~ 171 (518)
+.+...+.++.+|||+|||+|..+..+++. ...+++|+|+++. ...+..+|+..+|+++++||+
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 90 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDA 90 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceE
Confidence 334445678899999999999998877764 2368999999742 122456888889999999999
Q ss_pred EEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086 172 VFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 172 V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
|++..+ ++|+.++..+++++.++|||||.+++..
T Consensus 91 v~~~~~-~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 91 VRSDRV-LQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred EEEech-hhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 999997 9999999999999999999999998864
No 30
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.28 E-value=1.2e-11 Score=124.41 Aligned_cols=91 Identities=21% Similarity=0.269 Sum_probs=76.1
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHh-cCC-CcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcC
Q 010086 114 LSQSAKSLCVETQYGQDVFALKE-IGV-EDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGG 176 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~-~g~-~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~ 176 (518)
++++.+|||||||+|..+..+++ .|. .+++|+|+++. ...++.++.+++|+++++||+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 67899999999999987755544 343 47999999741 11245789999999999999999998
Q ss_pred ceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 177 ARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
+ ++|.+++.++++|+.|+|||||++++.
T Consensus 155 v-~~~~~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 155 V-INLSPDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred c-ccCCCCHHHHHHHHHHHcCCCcEEEEE
Confidence 7 999999999999999999999999886
No 31
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.24 E-value=1.5e-11 Score=118.38 Aligned_cols=87 Identities=16% Similarity=0.209 Sum_probs=74.7
Q ss_pred eEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------------CCc---EEeccCCCCC-CCCCceeEEEEcCceeec
Q 010086 119 KSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------------KPL---VISGEGHRIP-FDGNTFDFVFVGGARLEK 181 (518)
Q Consensus 119 rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------------~~l---~~~~da~~LP-f~D~SFD~V~s~~~~l~~ 181 (518)
.+|+||||||.....+.......||++|.++. +.. ++.+++++|| ++|+|+|.|++..+ |..
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv-LCS 157 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV-LCS 157 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE-Eec
Confidence 46999999999988776444479999998741 222 5689999999 89999999999998 999
Q ss_pred cCChHHHHHHHHhcccCCcEEEEEe
Q 010086 182 ASKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 182 ~~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
+.+|.+.++|+.|+|||||++++.-
T Consensus 158 ve~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 158 VEDPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 9999999999999999999988763
No 32
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.23 E-value=1.4e-10 Score=111.65 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=87.3
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcC
Q 010086 113 YLSQSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGG 176 (518)
Q Consensus 113 ll~~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~ 176 (518)
.++++.+|||+|||+|..+..++. .+..+|+|+|+++. ...++.+|+.+++. +++||+|++..
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA 120 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc
Confidence 356689999999999998877765 33469999999841 12346788888887 88999999965
Q ss_pred ceeeccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccC--ccEEEEeccCCCCCCccceeEEEEee
Q 010086 177 ARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNS--CKLVKSRDIDGIDSSLPYIREIVLKK 249 (518)
Q Consensus 177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~--~~~v~~~~v~~~~~~~p~~~~vv~kK 249 (518)
+ .++..+++++.|+|||||++++...........+..+. .. -..++...+.|.+.. |.+ +++||
T Consensus 121 --~---~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~--~~~~~ 186 (187)
T PRK00107 121 --V---ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKA-LGGKVEEVIELTLPGLDGE-RHL--VIIRK 186 (187)
T ss_pred --c---cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHh-cCceEeeeEEEecCCCCCc-EEE--EEEec
Confidence 3 35778999999999999999888654332211222221 12 145666666666542 333 45565
No 33
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.22 E-value=7.1e-11 Score=119.35 Aligned_cols=86 Identities=21% Similarity=0.251 Sum_probs=67.5
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhc-C---CCcEEEEecCCC---------C-CcEEeccCCCCCCCCCceeEEEEcCcee
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEI-G---VEDSIGIFKKSS---------K-PLVISGEGHRIPFDGNTFDFVFVGGARL 179 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~-g---~~~v~gID~s~~---------~-~l~~~~da~~LPf~D~SFD~V~s~~~~l 179 (518)
..++.+|||+|||+|..+..+.+. + ...++|+|+|+. + ..+..+|+.++||++++||+|++..+
T Consensus 83 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~-- 160 (272)
T PRK11088 83 DEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA-- 160 (272)
T ss_pred CCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC--
Confidence 345678999999999998877653 1 137899999842 1 23568899999999999999998653
Q ss_pred eccCChHHHHHHHHhcccCCcEEEEEec
Q 010086 180 EKASKPLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
| ..++|+.|+|||||++++...
T Consensus 161 -----~-~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 161 -----P-CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred -----C-CCHHHHHhhccCCCEEEEEeC
Confidence 2 236899999999999988753
No 34
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.22 E-value=4.2e-11 Score=103.54 Aligned_cols=89 Identities=21% Similarity=0.292 Sum_probs=67.8
Q ss_pred CCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC----------------CCcEEeccC-CCCCCCCCceeEEEEcC-
Q 010086 116 QSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS----------------KPLVISGEG-HRIPFDGNTFDFVFVGG- 176 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~----------------~~l~~~~da-~~LPf~D~SFD~V~s~~- 176 (518)
|+.+|||||||+|..+..+.+ .+..+++|+|+++. ...++++|+ ....+ .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 678999999999999988887 24478999999841 123567888 33333 34599999988
Q ss_pred ceeecc---CChHHHHHHHHhcccCCcEEEEEe
Q 010086 177 ARLEKA---SKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 177 ~~l~~~---~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
. ++++ .++.++++++.+.|||||++++..
T Consensus 80 ~-~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 T-LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp S-GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c-cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 4 4433 345688999999999999999864
No 35
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.22 E-value=2.2e-11 Score=116.80 Aligned_cols=91 Identities=21% Similarity=0.339 Sum_probs=75.4
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------CCcEEeccCCC-C-CCCCCceeEEEEcCceeecc
Q 010086 113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------KPLVISGEGHR-I-PFDGNTFDFVFVGGARLEKA 182 (518)
Q Consensus 113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------~~l~~~~da~~-L-Pf~D~SFD~V~s~~~~l~~~ 182 (518)
.+++|+||||+|||.|.+...|.+....+.+|||+++. ...++++|.+. | .|+|+|||.|+.+.+ ++++
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqt-LQ~~ 88 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQT-LQAV 88 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhH-HHhH
Confidence 47899999999999999999998754468999999852 22367887654 5 499999999999998 9999
Q ss_pred CChHHHHHHHHhcccCCcEEEEEec
Q 010086 183 SKPLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 183 ~dp~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
.+|+++++|+.|| |...++++.
T Consensus 89 ~~P~~vL~EmlRV---gr~~IVsFP 110 (193)
T PF07021_consen 89 RRPDEVLEEMLRV---GRRAIVSFP 110 (193)
T ss_pred hHHHHHHHHHHHh---cCeEEEEec
Confidence 9999999999888 556777764
No 36
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.21 E-value=1.1e-10 Score=119.07 Aligned_cols=113 Identities=13% Similarity=0.214 Sum_probs=83.9
Q ss_pred CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCceeec
Q 010086 116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGARLEK 181 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~ 181 (518)
++.+|||+|||+|..+..|++.| .+|+|+|+|+. ...+...|....++ +++||+|++..+ |+|
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~v-l~~ 196 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVV-LMF 196 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcch-hhh
Confidence 34599999999999999998887 69999999842 11133556666555 789999999987 888
Q ss_pred cC--ChHHHHHHHHhcccCCcEEEEEe--cCCC---------ccCchhHhhhccCccEEEEec
Q 010086 182 AS--KPLDFASEIVRTLKPEGFAVVHV--RAKD---------EYSFNSFLDLFNSCKLVKSRD 231 (518)
Q Consensus 182 ~~--dp~~~l~Ei~RVLKPGG~lvi~~--~~~~---------~~s~~~~~~lf~~~~~v~~~~ 231 (518)
+. +...+++++.|+|||||++++.. ...+ .++...+..+|+++++++..+
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~~~i~~~~e 259 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQDWEIVKYNE 259 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCCCEEEEEec
Confidence 75 34578999999999999965532 1111 134455777888899888765
No 37
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.17 E-value=2.1e-10 Score=112.44 Aligned_cols=116 Identities=15% Similarity=0.134 Sum_probs=83.3
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCC---------------------------CcEEeccCCCCCCC-
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSK---------------------------PLVISGEGHRIPFD- 165 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~---------------------------~l~~~~da~~LPf~- 165 (518)
+.++.+|||+|||.|..+..|++.| .+|+|||+|+.. ..++++|..+++..
T Consensus 32 ~~~~~rvLd~GCG~G~da~~LA~~G-~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 32 LPAGARVFVPLCGKSLDLAWLAEQG-HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCCeEEEeCCCchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 4577899999999999999999998 589999998530 12357888777653
Q ss_pred CCceeEEEEcCceeeccCCh--HHHHHHHHhcccCCcEEEEE-ecCC------Cc--cCchhHhhhcc-CccEEEEec
Q 010086 166 GNTFDFVFVGGARLEKASKP--LDFASEIVRTLKPEGFAVVH-VRAK------DE--YSFNSFLDLFN-SCKLVKSRD 231 (518)
Q Consensus 166 D~SFD~V~s~~~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi~-~~~~------~~--~s~~~~~~lf~-~~~~v~~~~ 231 (518)
.+.||.|+.... ++|++.. .+.++.+.+.|||||++++. .... +. ++...+.++|. .+++..+..
T Consensus 111 ~~~fD~i~D~~~-~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~~~~~i~~~~~ 187 (213)
T TIGR03840 111 LGPVDAVYDRAA-LIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYGGHYEIELLES 187 (213)
T ss_pred CCCcCEEEechh-hccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhcCCceEEEEee
Confidence 468999999876 8888533 35799999999999975444 3221 11 34445666665 456555544
No 38
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.17 E-value=3.4e-10 Score=110.18 Aligned_cols=88 Identities=23% Similarity=0.311 Sum_probs=70.0
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------C-CcEEeccCCCCCCCCCceeEEEEcCceeecc
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------K-PLVISGEGHRIPFDGNTFDFVFVGGARLEKA 182 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------~-~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~ 182 (518)
+.++.+|||||||+|..+..|.+. +..+++|||+|+. + ..+.++++.+ ||++++||+|++..+ |+|+
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~v-L~hl 118 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGV-LIHI 118 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECCh-hhhC
Confidence 457789999999999999888775 4479999999852 1 2356788888 999999999999997 9998
Q ss_pred C--ChHHHHHHHHhcccCCcEEEEE
Q 010086 183 S--KPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 183 ~--dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
. +..++++|+.|++ ++.+++.
T Consensus 119 ~p~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 119 NPDNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred CHHHHHHHHHHHHhhc--CcEEEEE
Confidence 5 2357889999998 4555554
No 39
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.16 E-value=1.7e-11 Score=121.87 Aligned_cols=89 Identities=22% Similarity=0.255 Sum_probs=72.0
Q ss_pred CCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------CCc---------EEeccCCCCCCCCCceeEEEEc
Q 010086 117 SAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------KPL---------VISGEGHRIPFDGNTFDFVFVG 175 (518)
Q Consensus 117 ~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------~~l---------~~~~da~~LPf~D~SFD~V~s~ 175 (518)
|.+|||+|||+|.+++.|++.| +.|+|||+++. |++ ....+++.+ -+.||+|+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeH
Confidence 4789999999999999999999 89999999741 111 112334433 2339999999
Q ss_pred CceeeccCChHHHHHHHHhcccCCcEEEEEecCCC
Q 010086 176 GARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKD 210 (518)
Q Consensus 176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~ 210 (518)
.+ ++|+.||..++.-+.+.|||||.+++++-.+.
T Consensus 166 ev-leHV~dp~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 166 EV-LEHVKDPQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred HH-HHHHhCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence 98 99999999999999999999999999875543
No 40
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.16 E-value=1.5e-10 Score=115.38 Aligned_cols=90 Identities=16% Similarity=0.192 Sum_probs=72.0
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHh---cCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEE
Q 010086 114 LSQSAKSLCVETQYGQDVFALKE---IGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFV 174 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~---~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s 174 (518)
++++.+|||||||+|..+..+++ .+..+++|+|+|+. ...++.+++.++|+++ +|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~--~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIEN--ASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCC--CCEEeh
Confidence 56789999999999998877765 12369999999841 1235678888888864 899999
Q ss_pred cCceeeccCCh--HHHHHHHHhcccCCcEEEEEe
Q 010086 175 GGARLEKASKP--LDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 175 ~~~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
..+ +||++++ ..+++++.|+|||||.+++.-
T Consensus 132 ~~~-l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 132 NFT-LQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhH-HHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 887 8888643 478999999999999998863
No 41
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.16 E-value=3.7e-11 Score=102.31 Aligned_cols=81 Identities=21% Similarity=0.126 Sum_probs=50.0
Q ss_pred EEEcCCCCHhHHHHHhc-CCCcEEEEecCCCCCc---------------EEeccCCCCC--CCCCceeEEEEcCceeecc
Q 010086 121 LCVETQYGQDVFALKEI-GVEDSIGIFKKSSKPL---------------VISGEGHRIP--FDGNTFDFVFVGGARLEKA 182 (518)
Q Consensus 121 LDVGcGtG~~~~~L~~~-g~~~v~gID~s~~~~l---------------~~~~da~~LP--f~D~SFD~V~s~~~~l~~~ 182 (518)
||||||+|..+..+.+. ...+++|+|+|+.... ....+..++. .+.++||+|++.++ +||+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~v-l~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNV-LHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-T-TS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhh-Hhhh
Confidence 79999999999777654 4479999999964210 1122222221 12369999999998 9999
Q ss_pred CChHHHHHHHHhcccCCcEE
Q 010086 183 SKPLDFASEIVRTLKPEGFA 202 (518)
Q Consensus 183 ~dp~~~l~Ei~RVLKPGG~l 202 (518)
+++..+++.+.+.|||||++
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999986
No 42
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.15 E-value=1.1e-10 Score=118.88 Aligned_cols=89 Identities=25% Similarity=0.320 Sum_probs=75.2
Q ss_pred CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCc-EEe-ccCCCCCCCCCceeEEEEcCcee
Q 010086 116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPL-VIS-GEGHRIPFDGNTFDFVFVGGARL 179 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l-~~~-~da~~LPf~D~SFD~V~s~~~~l 179 (518)
.|.+|||||||+|..+..+...|...|+|||.+.. ... ... -..++||. .++||.|||.++ |
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGV-L 192 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGV-L 192 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeee-h
Confidence 57899999999999998888888789999998631 111 122 35677887 789999999998 9
Q ss_pred eccCChHHHHHHHHhcccCCcEEEEEe
Q 010086 180 EKASKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
-|..+|...+.++...|||||.+++.+
T Consensus 193 YHrr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 193 YHRRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred hccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 999999999999999999999999874
No 43
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.13 E-value=1.7e-10 Score=117.29 Aligned_cols=95 Identities=22% Similarity=0.192 Sum_probs=67.6
Q ss_pred HHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCce
Q 010086 107 DLISEGYLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTF 169 (518)
Q Consensus 107 ~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SF 169 (518)
.++++.-+++|.+|||||||-|..+..+++. | .+|+||.+|+. ...+...|..+++. +|
T Consensus 53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g-~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~f 128 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG-CHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KF 128 (273)
T ss_dssp HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC-cEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CC
Confidence 3455556899999999999999999888876 7 69999999841 12245677776654 99
Q ss_pred eEEEEcCceeeccC--ChHHHHHHHHhcccCCcEEEEEe
Q 010086 170 DFVFVGGARLEKAS--KPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 170 D~V~s~~~~l~~~~--dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
|.|+|..+ ++|+. +-..+++.+.|.|||||.++++.
T Consensus 129 D~IvSi~~-~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 129 DRIVSIEM-FEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp SEEEEESE-GGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CEEEEEec-hhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 99999998 99994 44689999999999999998873
No 44
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.13 E-value=1.9e-10 Score=113.70 Aligned_cols=90 Identities=12% Similarity=0.188 Sum_probs=72.5
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhc---CCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEE
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEI---GVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFV 174 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~---g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s 174 (518)
+.++.+|||||||+|..+..+.+. +..+++|+|+|+. ...++.+|...+|+++ +|+|++
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~d~v~~ 128 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKN--ASMVIL 128 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCC--CCEEee
Confidence 467889999999999998777653 2368999999731 1235688999988864 899999
Q ss_pred cCceeeccCC--hHHHHHHHHhcccCCcEEEEEe
Q 010086 175 GGARLEKASK--PLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 175 ~~~~l~~~~d--p~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
..+ +||+.+ +..++++++|+|||||.+++..
T Consensus 129 ~~~-l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 129 NFT-LQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred ecc-hhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 887 899863 4679999999999999998873
No 45
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.12 E-value=6e-11 Score=101.74 Aligned_cols=81 Identities=26% Similarity=0.381 Sum_probs=63.1
Q ss_pred EEEEcCCCCHhHHHHHhc---CC-CcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCceeec
Q 010086 120 SLCVETQYGQDVFALKEI---GV-EDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGARLEK 181 (518)
Q Consensus 120 vLDVGcGtG~~~~~L~~~---g~-~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~ 181 (518)
|||+|||+|..+..+.+. |. .+++|+|+++. ...++++|+.++|+.+++||+|++....++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 799999999999888765 32 69999999831 2356799999999999999999995433888
Q ss_pred cCCh--HHHHHHHHhcccCCc
Q 010086 182 ASKP--LDFASEIVRTLKPEG 200 (518)
Q Consensus 182 ~~dp--~~~l~Ei~RVLKPGG 200 (518)
+.++ .++++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 7644 468999999999998
No 46
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.12 E-value=2.2e-10 Score=115.80 Aligned_cols=103 Identities=15% Similarity=0.125 Sum_probs=74.8
Q ss_pred HHHHHHHHcCCCCCCCeEEEEcCCCCHhH----HHHHhcC------CCcEEEEecCCC----------C-----------
Q 010086 103 SVFQDLISEGYLSQSAKSLCVETQYGQDV----FALKEIG------VEDSIGIFKKSS----------K----------- 151 (518)
Q Consensus 103 ~l~~~L~~~gll~~~~rvLDVGcGtG~~~----~~L~~~g------~~~v~gID~s~~----------~----------- 151 (518)
.++..+.+.....++.+|||+|||||..+ ..+.+.+ ..+++|+|+|+. +
T Consensus 86 ~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~ 165 (264)
T smart00138 86 KVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKAL 165 (264)
T ss_pred HHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHH
Confidence 33444444322345579999999999853 3344421 247999999841 0
Q ss_pred ---------------------CcEEeccCCCCCCCCCceeEEEEcCceeeccCChH--HHHHHHHhcccCCcEEEEEe
Q 010086 152 ---------------------PLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPL--DFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 152 ---------------------~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp~--~~l~Ei~RVLKPGG~lvi~~ 206 (518)
..+.++|..+.|+++++||+|+|.++ |+|++++. +++++++|+|||||++++.-
T Consensus 166 ~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnv-l~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 166 LARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNV-LIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred HhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechh-HHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 12346788888888999999999998 99987554 79999999999999999854
No 47
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.12 E-value=8.3e-10 Score=106.40 Aligned_cols=92 Identities=24% Similarity=0.289 Sum_probs=77.7
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcCC--CcEEEEecCCC-------------CCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIGV--EDSIGIFKKSS-------------KPLVISGEGHRIPFDGNTFDFVFVGGAR 178 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g~--~~v~gID~s~~-------------~~l~~~~da~~LPf~D~SFD~V~s~~~~ 178 (518)
..++.+|||+|||+|..+..+.+.+. .+++|+|+++. ...+..+|..++|+++++||+|++..+
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~- 115 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFG- 115 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeee-
Confidence 34788999999999999988876543 48999999731 134567888899999999999999887
Q ss_pred eeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086 179 LEKASKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 179 l~~~~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
++|..++..+++++.+.|||||++++..
T Consensus 116 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 116 LRNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred eCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999999999999999999999988753
No 48
>PRK06922 hypothetical protein; Provisional
Probab=99.11 E-value=2.7e-10 Score=126.50 Aligned_cols=91 Identities=16% Similarity=0.136 Sum_probs=73.8
Q ss_pred CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC--------------CCcEEeccCCCCC--CCCCceeEEEEcCc
Q 010086 115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS--------------KPLVISGEGHRIP--FDGNTFDFVFVGGA 177 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~--------------~~l~~~~da~~LP--f~D~SFD~V~s~~~ 177 (518)
.++.+|||||||+|..+..+++. +..+++|+|+|+. ...++++|+.++| |++++||+|+++..
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 46889999999999988777653 3469999999852 1124678988898 89999999999886
Q ss_pred eeecc-------------CChHHHHHHHHhcccCCcEEEEEe
Q 010086 178 RLEKA-------------SKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 178 ~l~~~-------------~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
+||+ .++.++++++.|+|||||.+++..
T Consensus 497 -LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 497 -LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred -HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 7765 245789999999999999998864
No 49
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.10 E-value=7.8e-10 Score=108.86 Aligned_cols=118 Identities=14% Similarity=0.136 Sum_probs=85.4
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCC---------------------------CcEEeccCCCCCCCC
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSK---------------------------PLVISGEGHRIPFDG 166 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~---------------------------~l~~~~da~~LPf~D 166 (518)
+.++.+|||+|||.|..+..|++.| .+|+|||+|+.. ..+.++|..+++..+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G-~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQG-HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCC-CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 4567899999999999999999998 589999998420 112468888875443
Q ss_pred -CceeEEEEcCceeeccCCh--HHHHHHHHhcccCCcEEEE-Ee--cC----CC--ccCchhHhhhccC-ccEEEEeccC
Q 010086 167 -NTFDFVFVGGARLEKASKP--LDFASEIVRTLKPEGFAVV-HV--RA----KD--EYSFNSFLDLFNS-CKLVKSRDID 233 (518)
Q Consensus 167 -~SFD~V~s~~~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi-~~--~~----~~--~~s~~~~~~lf~~-~~~v~~~~v~ 233 (518)
..||+|+.... |+|++.. .+.++.+.+.|||||++++ .. .. ++ .++...+.++|.. +++..+....
T Consensus 114 ~~~fd~v~D~~~-~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~~~~i~~~~~~~ 192 (218)
T PRK13255 114 LADVDAVYDRAA-LIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAGCFEIELLERQD 192 (218)
T ss_pred CCCeeEEEehHh-HhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcCCceEEEeeecc
Confidence 68999999886 8888533 3689999999999997443 32 11 11 1355557777776 6777666543
No 50
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.08 E-value=2.8e-10 Score=109.13 Aligned_cols=84 Identities=19% Similarity=0.319 Sum_probs=68.9
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------CCcEEeccCCC-C-CCCCCceeEEEEcCceeeccC
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------KPLVISGEGHR-I-PFDGNTFDFVFVGGARLEKAS 183 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------~~l~~~~da~~-L-Pf~D~SFD~V~s~~~~l~~~~ 183 (518)
++++.+|||||||+|..+..+++.+...++|+|+++. ...++.+|+.+ + ++++++||+|++..+ |+|+.
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~-l~~~~ 89 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQT-LQATR 89 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhH-hHcCc
Confidence 4678899999999999998887644457899998742 12356777765 5 588999999999998 99999
Q ss_pred ChHHHHHHHHhcccC
Q 010086 184 KPLDFASEIVRTLKP 198 (518)
Q Consensus 184 dp~~~l~Ei~RVLKP 198 (518)
+|..+++|+.|++|+
T Consensus 90 d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 90 NPEEILDEMLRVGRH 104 (194)
T ss_pred CHHHHHHHHHHhCCe
Confidence 999999999998775
No 51
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.08 E-value=3.3e-10 Score=110.39 Aligned_cols=86 Identities=24% Similarity=0.321 Sum_probs=70.7
Q ss_pred eEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCceeec
Q 010086 119 KSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGARLEK 181 (518)
Q Consensus 119 rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~ 181 (518)
+|||||||+|..+..+.+. +..+++|+|+|+. ...+..+|..+.|+++ +||+|++..+ ++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~-~fD~I~~~~~-l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPD-TYDLVFGFEV-IHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCC-CCCEeehHHH-HHh
Confidence 7999999999988877764 3368999999741 1134567776667764 8999999987 999
Q ss_pred cCChHHHHHHHHhcccCCcEEEEEe
Q 010086 182 ASKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 182 ~~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
+.++..+++++.|+|||||++++..
T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 9999999999999999999998864
No 52
>PRK06202 hypothetical protein; Provisional
Probab=99.06 E-value=8.5e-10 Score=108.65 Aligned_cols=90 Identities=11% Similarity=0.063 Sum_probs=69.1
Q ss_pred CCCCeEEEEcCCCCHhHHHHHh----cCC-CcEEEEecCCC------------CCcEEeccCCCCCCCCCceeEEEEcCc
Q 010086 115 SQSAKSLCVETQYGQDVFALKE----IGV-EDSIGIFKKSS------------KPLVISGEGHRIPFDGNTFDFVFVGGA 177 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~----~g~-~~v~gID~s~~------------~~l~~~~da~~LPf~D~SFD~V~s~~~ 177 (518)
.++.+|||||||+|..+..|.+ .|. .+++|+|+++. ...+...++..+|+++++||+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 4667999999999998877654 242 48999999842 112346677888889999999999997
Q ss_pred eeeccCChH--HHHHHHHhcccCCcEEEEEe
Q 010086 178 RLEKASKPL--DFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 178 ~l~~~~dp~--~~l~Ei~RVLKPGG~lvi~~ 206 (518)
|||+++++ .+++|+.|++| |++++..+
T Consensus 139 -lhh~~d~~~~~~l~~~~r~~~-~~~~i~dl 167 (232)
T PRK06202 139 -LHHLDDAEVVRLLADSAALAR-RLVLHNDL 167 (232)
T ss_pred -eecCChHHHHHHHHHHHHhcC-eeEEEecc
Confidence 99998864 69999999999 44443333
No 53
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.05 E-value=1.7e-09 Score=105.26 Aligned_cols=91 Identities=23% Similarity=0.311 Sum_probs=76.9
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcC--CCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEc
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIG--VEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVG 175 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g--~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~ 175 (518)
..++.+|||+|||+|..+..+.+.+ ..+++|+|+++. ...++.+|..++|+++++||+|++.
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~ 128 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIA 128 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEe
Confidence 4467899999999999998887654 479999998731 1234578888889989999999998
Q ss_pred CceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 176 GARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
.+ +++..++...++++.+.|||||++++.
T Consensus 129 ~~-l~~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 129 FG-LRNVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred cc-cccCCCHHHHHHHHHHhccCCcEEEEE
Confidence 87 999999999999999999999998775
No 54
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.03 E-value=8.9e-10 Score=117.00 Aligned_cols=95 Identities=16% Similarity=0.188 Sum_probs=72.8
Q ss_pred HHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------C---CcEEeccCCCCCCCCCceeEEEEc
Q 010086 108 LISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------K---PLVISGEGHRIPFDGNTFDFVFVG 175 (518)
Q Consensus 108 L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------~---~l~~~~da~~LPf~D~SFD~V~s~ 175 (518)
+.+...++++.+|||||||+|..+..+++....+|+|+|+|+. . ..+..+|...+ +++||.|+|.
T Consensus 159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~ 235 (383)
T PRK11705 159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSV 235 (383)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEe
Confidence 3343446889999999999999998787642258999999842 1 11234555544 5799999998
Q ss_pred CceeeccCC--hHHHHHHHHhcccCCcEEEEEe
Q 010086 176 GARLEKASK--PLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 176 ~~~l~~~~d--p~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
.. ++|+.+ +..+++++.|+|||||+++++.
T Consensus 236 ~~-~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 236 GM-FEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred Cc-hhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 87 999853 4689999999999999999874
No 55
>PRK04266 fibrillarin; Provisional
Probab=99.03 E-value=2.2e-09 Score=106.23 Aligned_cols=137 Identities=11% Similarity=0.175 Sum_probs=85.2
Q ss_pred hccCChhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC-------------CC
Q 010086 87 DMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS-------------KP 152 (518)
Q Consensus 87 ~~w~s~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~-------------~~ 152 (518)
..|.+.. ......++..+ +.-.++++.+|||+|||+|..+..+++. +...|+|+|+++. ..
T Consensus 48 ~~~~~~r----~~~~~~ll~~~-~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv 122 (226)
T PRK04266 48 REWNPRR----SKLAAAILKGL-KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNI 122 (226)
T ss_pred EEECCCc----cchHHHHHhhH-hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCc
Confidence 5666632 12233444433 2234679999999999999999888764 3358999999851 12
Q ss_pred cEEeccCCC----CCCCCCceeEEEEcCceeeccCCh---HHHHHHHHhcccCCcEEEEEecCC--Ccc-Cc----hhHh
Q 010086 153 LVISGEGHR----IPFDGNTFDFVFVGGARLEKASKP---LDFASEIVRTLKPEGFAVVHVRAK--DEY-SF----NSFL 218 (518)
Q Consensus 153 l~~~~da~~----LPf~D~SFD~V~s~~~~l~~~~dp---~~~l~Ei~RVLKPGG~lvi~~~~~--~~~-s~----~~~~ 218 (518)
..+.+|+.+ .+++ ++||+|++.. .+| ..+++|+.|+|||||.+++.+... +.. .. ....
T Consensus 123 ~~i~~D~~~~~~~~~l~-~~~D~i~~d~------~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~ 195 (226)
T PRK04266 123 IPILADARKPERYAHVV-EKVDVIYQDV------AQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEI 195 (226)
T ss_pred EEEECCCCCcchhhhcc-ccCCEEEECC------CChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHH
Confidence 345677754 1233 5699999743 233 346899999999999999953221 110 00 0122
Q ss_pred hhcc--CccEEEEeccCCC
Q 010086 219 DLFN--SCKLVKSRDIDGI 235 (518)
Q Consensus 219 ~lf~--~~~~v~~~~v~~~ 235 (518)
+++. .|+++.......|
T Consensus 196 ~~l~~aGF~~i~~~~l~p~ 214 (226)
T PRK04266 196 RKLEEGGFEILEVVDLEPY 214 (226)
T ss_pred HHHHHcCCeEEEEEcCCCC
Confidence 3333 5777777776655
No 56
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.01 E-value=3e-09 Score=92.90 Aligned_cols=90 Identities=17% Similarity=0.194 Sum_probs=68.1
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------CCcEEeccCCC-CCCCCCceeEEEEc
Q 010086 113 YLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------KPLVISGEGHR-IPFDGNTFDFVFVG 175 (518)
Q Consensus 113 ll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------~~l~~~~da~~-LPf~D~SFD~V~s~ 175 (518)
.+.++.++||+|||+|..+..+.+. +..+++|+|+++. ...++.+++.. ++...++||+|++.
T Consensus 16 ~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~ 95 (124)
T TIGR02469 16 RLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIG 95 (124)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEEC
Confidence 4567789999999999999877764 3368999998741 12234566654 44555799999997
Q ss_pred CceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086 176 GARLEKASKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
.. .++ ..++++++.|+|||||.+++.+
T Consensus 96 ~~-~~~---~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 96 GS-GGL---LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred Cc-chh---HHHHHHHHHHHcCCCCEEEEEe
Confidence 74 443 3578999999999999999875
No 57
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.01 E-value=2.8e-09 Score=101.94 Aligned_cols=87 Identities=11% Similarity=0.080 Sum_probs=67.4
Q ss_pred CCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCcee
Q 010086 116 QSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGARL 179 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l 179 (518)
++.+|||||||+|..+..++..+ ..+|+|+|.++. ...++++|+++++ .+++||+|+|.. +
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~--~ 118 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA--L 118 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh--h
Confidence 37899999999999887776543 358999999851 1234678888875 468999999965 4
Q ss_pred eccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086 180 EKASKPLDFASEIVRTLKPEGFAVVHVRA 208 (518)
Q Consensus 180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~ 208 (518)
++ ....++++.|+|||||++++..+.
T Consensus 119 ~~---~~~~~~~~~~~LkpgG~lvi~~~~ 144 (181)
T TIGR00138 119 AS---LNVLLELTLNLLKVGGYFLAYKGK 144 (181)
T ss_pred hC---HHHHHHHHHHhcCCCCEEEEEcCC
Confidence 43 556789999999999999987643
No 58
>PF13383 Methyltransf_22: Methyltransferase domain
Probab=98.99 E-value=1.8e-09 Score=107.81 Aligned_cols=135 Identities=17% Similarity=0.286 Sum_probs=88.7
Q ss_pred CceEEEEeCCCCCCcchhhhhhhhCC--CCCcceEEEEEcCCccchHhhccCCceEEEeeceeecCCceEEEecCCCCcc
Q 010086 318 NRYVYVDVGARSYGSSIGSWFKKQYP--KQNKTFDVYAIEADKTFHEEYKVKKKVKLLPYAAWVRNETLSFQINHDPDKE 395 (518)
Q Consensus 318 ~r~V~iD~GAn~~g~sv~~~F~~~YP--~~~~~f~V~afE~np~~~~~~~~~~~V~~~~~Av~~~~~tl~f~~~~~~~~~ 395 (518)
++-++.=+|.|. -.|...-..+.++ | +||+|+|+..........+++++++..++.++....
T Consensus 83 ~~C~vySfG~n~-~~sFe~~m~~~~g~~C-----~V~~FD~~~~~~~~~~~~~~~~f~~~gl~~~~~~~~---------- 146 (242)
T PF13383_consen 83 DDCVVYSFGSNN-DWSFEEEMAKRTGRGC-----EVHAFDPSMQNEDQPQNSDRIHFHKLGLGSKDSESI---------- 146 (242)
T ss_pred CCeEEEEecCCC-CcHHHHHHHHhhCCCC-----eEEEECCCcccccccccchhhHHHhccccCCccccc----------
Confidence 466788889884 4345444455677 5 799999876654333344666666654432221000
Q ss_pred hhhcccCCccccccccCCCCCCCCCcceeecccHHHHHhhcC---CCCCeEEEEeeccchhhhhHHHHHhcCCcccccEE
Q 010086 396 VVVKGRGMGRIQPVQSLSDGGFDGEVDRIQGFDFADWLKNTV---TDKDFVVMKMDVEGTEFDLIPRLFETGAICLIDEI 472 (518)
Q Consensus 396 ~~~~~~g~~~i~p~~~~~~~~~~g~~~~v~~vd~s~wl~~~v---~~~D~VVlKMDIEGaE~~vL~~l~~~g~i~~IDeL 472 (518)
... ....|++.++++- +..| ||||||||+||++|+.|++++. +.|
T Consensus 147 ----------------------~~~----~~~tl~~i~~~lgH~~~~id--iLKiDIEG~Ew~~L~~~l~~~~----~Qi 194 (242)
T PF13383_consen 147 ----------------------NPK----LVYTLSDIMKMLGHKGREID--ILKIDIEGAEWTVLEPLLESGV----CQI 194 (242)
T ss_pred ----------------------cch----hhccHHHHHHHhcCCCcccc--EEEEEcCccHHHHHHHHHhcCC----cEE
Confidence 000 0235666666652 3445 7999999999999999999888 999
Q ss_pred EEEeecccccccCCCCCCCcccccHHHHHHHHHHHhhCCeee
Q 010086 473 FLECHYNRWQRCCPGQRSPKYKKTYEQCLELFTSLRQNGVLV 514 (518)
Q Consensus 473 fvE~H~~~~~~~~~g~~~~~~~~~~~~cl~L~~~LR~~Gv~v 514 (518)
++|+|.. + .. ......++..|++.|++.
T Consensus 195 ~iEiH~~--~----~~--------~~~~~~~l~~l~~~gfr~ 222 (242)
T PF13383_consen 195 LIEIHGW--P----SE--------HREWYKLLQELEKAGFRL 222 (242)
T ss_pred EEEEEeC--c----cc--------hhHHHHHHHHHHHCCcEE
Confidence 9999962 1 11 123678999999999875
No 59
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.98 E-value=5.1e-09 Score=101.71 Aligned_cols=126 Identities=17% Similarity=0.152 Sum_probs=78.2
Q ss_pred CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCCCcEEeccCCCCCCCCCceeEEEEcCceeeccCChHHHHHHHHh
Q 010086 115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVR 194 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~R 194 (518)
+++..|-|+|||.+.++..+.+ + ..|...|+....+.+..+|..++|++|+++|+|++..+ |.- .|-..++.|+.|
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~-~-~~V~SfDLva~n~~Vtacdia~vPL~~~svDv~VfcLS-LMG-Tn~~~fi~EA~R 146 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPN-K-HKVHSFDLVAPNPRVTACDIANVPLEDESVDVAVFCLS-LMG-TNWPDFIREANR 146 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S-----EEEEESS-SSTTEEES-TTS-S--TT-EEEEEEES----S-S-HHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHhccc-C-ceEEEeeccCCCCCEEEecCccCcCCCCceeEEEEEhh-hhC-CCcHHHHHHHHh
Confidence 4456899999999998877652 2 47999999877778889999999999999999998876 654 466789999999
Q ss_pred cccCCcEEEEE-ecCCCccCchhHhhhcc--CccEEEEeccCCCCCCccceeEEEEeecc
Q 010086 195 TLKPEGFAVVH-VRAKDEYSFNSFLDLFN--SCKLVKSRDIDGIDSSLPYIREIVLKKES 251 (518)
Q Consensus 195 VLKPGG~lvi~-~~~~~~~s~~~~~~lf~--~~~~v~~~~v~~~~~~~p~~~~vv~kK~~ 251 (518)
||||||.+.|. +.. ...+...|.+... .|++......+. +.....|+|..
T Consensus 147 vLK~~G~L~IAEV~S-Rf~~~~~F~~~~~~~GF~~~~~d~~n~------~F~~f~F~K~~ 199 (219)
T PF05148_consen 147 VLKPGGILKIAEVKS-RFENVKQFIKALKKLGFKLKSKDESNK------HFVLFEFKKIR 199 (219)
T ss_dssp HEEEEEEEEEEEEGG-G-S-HHHHHHHHHCTTEEEEEEE--ST------TEEEEEEEE-S
T ss_pred eeccCcEEEEEEecc-cCcCHHHHHHHHHHCCCeEEecccCCC------eEEEEEEEEcC
Confidence 99999999887 432 2223455555544 456666544331 44568888874
No 60
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.98 E-value=5.4e-09 Score=100.95 Aligned_cols=113 Identities=12% Similarity=0.210 Sum_probs=79.0
Q ss_pred CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCceeec
Q 010086 116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGARLEK 181 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~ 181 (518)
+..++||+|||.|+.+..|++.| .+|+++|.|+. +......|..+..++ +.||+|+|..+ |++
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G-~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v-~~f 106 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQG-FDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVV-FMF 106 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESS-GGG
T ss_pred CCCcEEEcCCCCcHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEE-ecc
Confidence 46799999999999999999999 58999999841 112346677777775 68999999876 888
Q ss_pred cCCh--HHHHHHHHhcccCCcEEEEE-e-cCCCc---------cCchhHhhhccCccEEEEec
Q 010086 182 ASKP--LDFASEIVRTLKPEGFAVVH-V-RAKDE---------YSFNSFLDLFNSCKLVKSRD 231 (518)
Q Consensus 182 ~~dp--~~~l~Ei~RVLKPGG~lvi~-~-~~~~~---------~s~~~~~~lf~~~~~v~~~~ 231 (518)
+..+ .+.++.|...+||||+.++. . ...+. +....+...|.++++++-.+
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~dW~il~y~E 169 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYADWEILKYNE 169 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTTTSEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhCCCeEEEEEc
Confidence 7644 35789999999999997764 2 22221 22244667788888888655
No 61
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.98 E-value=1.1e-09 Score=106.15 Aligned_cols=91 Identities=15% Similarity=0.178 Sum_probs=70.4
Q ss_pred CCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------CCcEEeccC-CCCC--CCCCceeEEEEcC
Q 010086 116 QSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------KPLVISGEG-HRIP--FDGNTFDFVFVGG 176 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------~~l~~~~da-~~LP--f~D~SFD~V~s~~ 176 (518)
++.+|||+|||+|..+..+++. +..+++|+|+++. ...++++|+ +.++ +++++||.|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 5789999999999999888764 3368999999851 123567888 7887 8899999999865
Q ss_pred ceeeccC--------ChHHHHHHHHhcccCCcEEEEEec
Q 010086 177 ARLEKAS--------KPLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 177 ~~l~~~~--------dp~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
. ..+.. ....+++++.|+|||||++++.+.
T Consensus 120 ~-~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 120 P-DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred C-CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 3 32211 135789999999999999999764
No 62
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.97 E-value=5e-09 Score=101.85 Aligned_cols=90 Identities=21% Similarity=0.196 Sum_probs=73.7
Q ss_pred CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCC-CCceeEEEEcCcee
Q 010086 116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFD-GNTFDFVFVGGARL 179 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~-D~SFD~V~s~~~~l 179 (518)
.+.+|||+|||+|..+..+.+.+ .+++|+|+++. ...+..++..+++.+ +++||+|++... +
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~-l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG-ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV-L 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH-H
Confidence 47899999999999988887766 57999998741 122345677777665 489999999987 9
Q ss_pred eccCChHHHHHHHHhcccCCcEEEEEec
Q 010086 180 EKASKPLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
+|+.++..+++++.++|+|||.+++...
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 9999999999999999999999888654
No 63
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.95 E-value=5.6e-09 Score=101.44 Aligned_cols=88 Identities=25% Similarity=0.184 Sum_probs=68.5
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC--------------C--CcEEeccCCCCCCCCCceeEEEE
Q 010086 113 YLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS--------------K--PLVISGEGHRIPFDGNTFDFVFV 174 (518)
Q Consensus 113 ll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~--------------~--~l~~~~da~~LPf~D~SFD~V~s 174 (518)
-++++.+|||||||+|..+..+++. + ..+|+|+|+++. . ..++.+|+.+.+.++++||.|++
T Consensus 69 ~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~ 148 (205)
T PRK13944 69 EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIV 148 (205)
T ss_pred CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEE
Confidence 3578899999999999998777763 2 358999999841 1 12457888776556789999999
Q ss_pred cCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086 175 GGARLEKASKPLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 175 ~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
..+ ++|++ .|+.|+|||||++++.+.
T Consensus 149 ~~~-~~~~~------~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 149 TAA-ASTIP------SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred ccC-cchhh------HHHHHhcCcCcEEEEEEc
Confidence 886 77653 588999999999988764
No 64
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.93 E-value=2.6e-08 Score=95.16 Aligned_cols=98 Identities=18% Similarity=0.084 Sum_probs=70.2
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCCC----CcEEeccCCCCC--------CCCCceeEEEEcC
Q 010086 111 EGYLSQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSSK----PLVISGEGHRIP--------FDGNTFDFVFVGG 176 (518)
Q Consensus 111 ~gll~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~~----~l~~~~da~~LP--------f~D~SFD~V~s~~ 176 (518)
...++++.+|||+|||+|..+..+.+. +..+++|+|+++.. ..++++|..+.+ +++++||+|++..
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~ 106 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDA 106 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCC
Confidence 345788999999999999998777653 23579999998731 124566766543 6788999999854
Q ss_pred c-e------eecc---CChHHHHHHHHhcccCCcEEEEEecC
Q 010086 177 A-R------LEKA---SKPLDFASEIVRTLKPEGFAVVHVRA 208 (518)
Q Consensus 177 ~-~------l~~~---~dp~~~l~Ei~RVLKPGG~lvi~~~~ 208 (518)
. . ++|. .+...+++++.|+|||||++++....
T Consensus 107 ~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 107 APNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred CCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 2 0 1111 11257899999999999999986543
No 65
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.92 E-value=3e-09 Score=104.37 Aligned_cols=92 Identities=20% Similarity=0.185 Sum_probs=74.6
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCC-CCCCceeEEEEcCce
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIP-FDGNTFDFVFVGGAR 178 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LP-f~D~SFD~V~s~~~~ 178 (518)
..++.+|||||||+|..+..+.+.+ .+++++|+++. ...+..++...++ ..++.||+|++...
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~- 123 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM- 123 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhH-
Confidence 4568899999999999988887776 68999998742 1123455666554 45689999999987
Q ss_pred eeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086 179 LEKASKPLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 179 l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
++|..++..+++++.++|+|||.+++...
T Consensus 124 l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 124 LEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 99999999999999999999999988754
No 66
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.92 E-value=7.8e-09 Score=101.08 Aligned_cols=98 Identities=21% Similarity=0.235 Sum_probs=73.8
Q ss_pred HHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC---------------CCcEEeccCCCCCCC
Q 010086 103 SVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS---------------KPLVISGEGHRIPFD 165 (518)
Q Consensus 103 ~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~---------------~~l~~~~da~~LPf~ 165 (518)
.+...+++..-++++.+|||||||+|..+..+++. + ..+|+++|+++. ...++.+|+...+.+
T Consensus 63 ~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~ 142 (212)
T PRK13942 63 HMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE 142 (212)
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc
Confidence 33334444445788999999999999999877764 3 258999999741 133568898877778
Q ss_pred CCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086 166 GNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 166 D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
++.||.|++..+ ++++ ..++.+.|||||++++..+
T Consensus 143 ~~~fD~I~~~~~-~~~~------~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 143 NAPYDRIYVTAA-GPDI------PKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred CCCcCEEEECCC-cccc------hHHHHHhhCCCcEEEEEEc
Confidence 899999999876 6554 2467889999999998764
No 67
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.91 E-value=5e-09 Score=104.08 Aligned_cols=125 Identities=14% Similarity=0.125 Sum_probs=90.2
Q ss_pred CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCCCcEEeccCCCCCCCCCceeEEEEcCceeeccCChHHHHHHHHh
Q 010086 115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVR 194 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~R 194 (518)
+...-|-|+|||.+.++. .+ ...|...|+..-...++.+|..++|.+|+|.|++++..+ |.- .|...++.|+.|
T Consensus 179 ~~~~vIaD~GCGEakiA~--~~--~~kV~SfDL~a~~~~V~~cDm~~vPl~d~svDvaV~CLS-LMg-tn~~df~kEa~R 252 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS--SE--RHKVHSFDLVAVNERVIACDMRNVPLEDESVDVAVFCLS-LMG-TNLADFIKEANR 252 (325)
T ss_pred cCceEEEecccchhhhhh--cc--ccceeeeeeecCCCceeeccccCCcCccCcccEEEeeHh-hhc-ccHHHHHHHHHH
Confidence 345678899999988764 11 358999999776667888999999999999999998775 433 577889999999
Q ss_pred cccCCcEEEEEecCCCccCchhHhhhc--cCccEEEEeccCCCCCCccceeEEEEeecc
Q 010086 195 TLKPEGFAVVHVRAKDEYSFNSFLDLF--NSCKLVKSRDIDGIDSSLPYIREIVLKKES 251 (518)
Q Consensus 195 VLKPGG~lvi~~~~~~~~s~~~~~~lf--~~~~~v~~~~v~~~~~~~p~~~~vv~kK~~ 251 (518)
||||||.+.|+--....-|...|.+-+ -.|++.+....+. ++...+|+|..
T Consensus 253 iLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~n~------~F~lfefkK~~ 305 (325)
T KOG3045|consen 253 ILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVSNK------YFTLFEFKKTP 305 (325)
T ss_pred HhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhhcc------eEEEEEEecCC
Confidence 999999999973332333334443332 2456666544332 55678899974
No 68
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.90 E-value=3.6e-09 Score=101.89 Aligned_cols=92 Identities=16% Similarity=0.204 Sum_probs=68.6
Q ss_pred CCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------CCcEEeccCCCCC---CCCCceeEEEEcC
Q 010086 116 QSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------KPLVISGEGHRIP---FDGNTFDFVFVGG 176 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------~~l~~~~da~~LP---f~D~SFD~V~s~~ 176 (518)
...++||||||+|..+..+++. +..+++|+|++.. ...++++|+.+++ +++++||.|++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4569999999999999877764 3468999999741 1224678887664 6788999999865
Q ss_pred ceeeccCCh--------HHHHHHHHhcccCCcEEEEEecC
Q 010086 177 ARLEKASKP--------LDFASEIVRTLKPEGFAVVHVRA 208 (518)
Q Consensus 177 ~~l~~~~dp--------~~~l~Ei~RVLKPGG~lvi~~~~ 208 (518)
. ..|.... ..++++++|+|||||.+++.+..
T Consensus 96 p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 96 P-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred C-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 3 2222111 46899999999999999987743
No 69
>PTZ00146 fibrillarin; Provisional
Probab=98.88 E-value=2.2e-08 Score=102.39 Aligned_cols=123 Identities=13% Similarity=0.107 Sum_probs=80.0
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC-------------CCcEEeccCCC---CCCCCCceeEEEE
Q 010086 113 YLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS-------------KPLVISGEGHR---IPFDGNTFDFVFV 174 (518)
Q Consensus 113 ll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~-------------~~l~~~~da~~---LPf~D~SFD~V~s 174 (518)
.++++.+|||+|||+|..+..+++. | ...|+++|+++. ....+.+|+.. ++++.++||+|++
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence 3689999999999999999888874 3 358999998741 11234567643 2334568999999
Q ss_pred cCceeeccCChHHHHHHHHhcccCCcEEEEEecCCCccC---chhH----hhhcc--CccEEEEeccCCCCCC
Q 010086 175 GGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYS---FNSF----LDLFN--SCKLVKSRDIDGIDSS 238 (518)
Q Consensus 175 ~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s---~~~~----~~lf~--~~~~v~~~~v~~~~~~ 238 (518)
..+ ...++..++.|+.|+|||||.+++.+.+....+ .... .+.++ .|+.+....+..|+-.
T Consensus 209 Dva---~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~ 278 (293)
T PTZ00146 209 DVA---QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERD 278 (293)
T ss_pred eCC---CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCC
Confidence 763 222334566799999999999999653332211 1111 12223 4676666666666643
No 70
>PRK14967 putative methyltransferase; Provisional
Probab=98.87 E-value=1.6e-08 Score=99.25 Aligned_cols=94 Identities=16% Similarity=0.088 Sum_probs=68.1
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086 113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGAR 178 (518)
Q Consensus 113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~ 178 (518)
.++++.+|||+|||+|..+..+++.+..+++|+|+++. ...++.+|... ++++++||+|++..-+
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy 111 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPY 111 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCC
Confidence 35778999999999999988888777569999999841 11234566654 4678899999997421
Q ss_pred eeccC--------------------ChHHHHHHHHhcccCCcEEEEEec
Q 010086 179 LEKAS--------------------KPLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 179 l~~~~--------------------dp~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
..+.. ....+++++.|+|||||++++...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 21111 024578899999999999887643
No 71
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.86 E-value=4.6e-09 Score=102.08 Aligned_cols=118 Identities=13% Similarity=0.137 Sum_probs=94.4
Q ss_pred ccCChhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC--------C--CcEEe
Q 010086 88 MYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS--------K--PLVIS 156 (518)
Q Consensus 88 ~w~s~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~--------~--~l~~~ 156 (518)
.|+...+.+....-+.-..+|.+.--+.+-.+|.|+|||+|+.++.|.+ .+...++|||-|+. . ..+.+
T Consensus 2 ~W~p~~Yl~F~~eRtRPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~ 81 (257)
T COG4106 2 DWNPDQYLQFEDERTRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEE 81 (257)
T ss_pred CCCHHHHHHHHHhccCcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceec
Confidence 3777777776555566677788777777889999999999999988876 45689999998741 1 12456
Q ss_pred ccCCCCCCCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086 157 GEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 157 ~da~~LPf~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
+|..+. -|+..+|++|++.+ |+|++|-.+.+.-..--|.|||+++++..
T Consensus 82 aDl~~w-~p~~~~dllfaNAv-lqWlpdH~~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 82 ADLRTW-KPEQPTDLLFANAV-LQWLPDHPELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred ccHhhc-CCCCccchhhhhhh-hhhccccHHHHHHHHHhhCCCceEEEECC
Confidence 777664 25788999999987 99999988999999999999999999974
No 72
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.85 E-value=2.9e-08 Score=93.92 Aligned_cols=89 Identities=15% Similarity=0.048 Sum_probs=66.6
Q ss_pred CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCceee
Q 010086 115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGARLE 180 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~ 180 (518)
.++.+|||+|||+|..+..+.+.+. +++|+|+++. ...++.+|..+.+ +++||+|+++.. ++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p-~~ 93 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPP-YL 93 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCC-CC
Confidence 3567899999999999988888774 8999999842 1123456765543 469999999875 55
Q ss_pred ccCC---------------------hHHHHHHHHhcccCCcEEEEEec
Q 010086 181 KASK---------------------PLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 181 ~~~d---------------------p~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
+..+ ..++++++.|+|||||.+++...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 94 PLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred CCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 4432 23579999999999999888653
No 73
>PLN03075 nicotianamine synthase; Provisional
Probab=98.84 E-value=9.4e-08 Score=98.01 Aligned_cols=129 Identities=10% Similarity=0.058 Sum_probs=85.4
Q ss_pred CCCeEEEEcCCCCHhH-HH-HHhc-CCCcEEEEecCCC-----------------CCcEEeccCCCCCCCCCceeEEEEc
Q 010086 116 QSAKSLCVETQYGQDV-FA-LKEI-GVEDSIGIFKKSS-----------------KPLVISGEGHRIPFDGNTFDFVFVG 175 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~-~~-L~~~-g~~~v~gID~s~~-----------------~~l~~~~da~~LPf~D~SFD~V~s~ 175 (518)
+..+|+|||||.|..+ .. ++.. ....++|+|+++. ...+..+|+.+++-..+.||+||+.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 6789999999988544 22 3232 2357999999741 1235678887764345789999998
Q ss_pred Cceeecc--CChHHHHHHHHhcccCCcEEEEEecCCC---ccCchhHhhhccCccEEEEeccCCCCCCccceeEEEEeec
Q 010086 176 GARLEKA--SKPLDFASEIVRTLKPEGFAVVHVRAKD---EYSFNSFLDLFNSCKLVKSRDIDGIDSSLPYIREIVLKKE 250 (518)
Q Consensus 176 ~~~l~~~--~dp~~~l~Ei~RVLKPGG~lvi~~~~~~---~~s~~~~~~lf~~~~~v~~~~v~~~~~~~p~~~~vv~kK~ 250 (518)
+ ++++ .++.++++.+.|.|||||++++...++- .|..-... ..+.|++..+..+++ .- .=+.|++||.
T Consensus 203 -A-Li~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~-~~~gf~~~~~~~P~~--~v--~Nsvi~~r~~ 275 (296)
T PLN03075 203 -A-LVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPC-DLRGFEVLSVFHPTD--EV--INSVIIARKP 275 (296)
T ss_pred -c-ccccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChh-hCCCeEEEEEECCCC--Cc--eeeEEEEEee
Confidence 6 8887 5889999999999999999999874332 12211111 235666666655543 11 1235777776
Q ss_pred c
Q 010086 251 S 251 (518)
Q Consensus 251 ~ 251 (518)
.
T Consensus 276 ~ 276 (296)
T PLN03075 276 G 276 (296)
T ss_pred c
Confidence 4
No 74
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.84 E-value=9.1e-09 Score=101.49 Aligned_cols=92 Identities=17% Similarity=0.187 Sum_probs=67.9
Q ss_pred CCC-eEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------CCcE------EeccCCCCCCC--CCceeEEEEcCce
Q 010086 116 QSA-KSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------KPLV------ISGEGHRIPFD--GNTFDFVFVGGAR 178 (518)
Q Consensus 116 ~~~-rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------~~l~------~~~da~~LPf~--D~SFD~V~s~~~~ 178 (518)
++. .++|||||+|+.+..+++. +.+|+|+|+|+. ++.. ...+.+-.++- ++|+|+|++..+
T Consensus 32 ~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa- 109 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA- 109 (261)
T ss_pred CCcceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh-
Confidence 444 7899999999888888776 589999999841 1111 12333444554 999999999997
Q ss_pred eeccCChHHHHHHHHhcccCCc-EEEEEecCCC
Q 010086 179 LEKASKPLDFASEIVRTLKPEG-FAVVHVRAKD 210 (518)
Q Consensus 179 l~~~~dp~~~l~Ei~RVLKPGG-~lvi~~~~~~ 210 (518)
+||+ |.+++++++.|||||.| ++++-....+
T Consensus 110 ~HWF-dle~fy~~~~rvLRk~Gg~iavW~Y~dd 141 (261)
T KOG3010|consen 110 VHWF-DLERFYKEAYRVLRKDGGLIAVWNYNDD 141 (261)
T ss_pred HHhh-chHHHHHHHHHHcCCCCCEEEEEEccCC
Confidence 8886 56799999999999977 6666554434
No 75
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.81 E-value=2e-08 Score=102.07 Aligned_cols=99 Identities=20% Similarity=0.211 Sum_probs=73.6
Q ss_pred HcCCCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCCC-----------CcE--EeccCCCCCCCCCceeEEEEc
Q 010086 110 SEGYLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSSK-----------PLV--ISGEGHRIPFDGNTFDFVFVG 175 (518)
Q Consensus 110 ~~gll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~~-----------~l~--~~~da~~LPf~D~SFD~V~s~ 175 (518)
+.-.|++|.++||||||-|.++..+++. | .+|+|+++|++. .+- +.......+..++.||-|+|.
T Consensus 66 ~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~-v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrIvSv 144 (283)
T COG2230 66 EKLGLKPGMTLLDIGCGWGGLAIYAAEEYG-VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRIVSV 144 (283)
T ss_pred HhcCCCCCCEEEEeCCChhHHHHHHHHHcC-CEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccceeeeh
Confidence 3345899999999999999999877765 5 799999999531 110 111122333445569999999
Q ss_pred CceeeccCC--hHHHHHHHHhcccCCcEEEEE-ecCCC
Q 010086 176 GARLEKASK--PLDFASEIVRTLKPEGFAVVH-VRAKD 210 (518)
Q Consensus 176 ~~~l~~~~d--p~~~l~Ei~RVLKPGG~lvi~-~~~~~ 210 (518)
.+ |+|+-. -..+++-+.++|+|||.++++ +...+
T Consensus 145 gm-fEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 145 GM-FEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred hh-HHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 98 999975 678999999999999998886 44433
No 76
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.81 E-value=2.1e-08 Score=97.96 Aligned_cols=89 Identities=25% Similarity=0.236 Sum_probs=67.7
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHhcC--CCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEc
Q 010086 113 YLSQSAKSLCVETQYGQDVFALKEIG--VEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVG 175 (518)
Q Consensus 113 ll~~~~rvLDVGcGtG~~~~~L~~~g--~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~ 175 (518)
-++++.+|||||||+|..+..|++.. ...|+++|+++. ...++.+|+.+.+...+.||+|++.
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 153 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVT 153 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEc
Confidence 36789999999999999998887753 135999998741 1234678887765556799999987
Q ss_pred CceeeccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086 176 GARLEKASKPLDFASEIVRTLKPEGFAVVHVRA 208 (518)
Q Consensus 176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~ 208 (518)
.. ..++ ..++.+.|||||++++.+..
T Consensus 154 ~~-~~~~------~~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 154 AA-GPKI------PEALIDQLKEGGILVMPVGE 179 (215)
T ss_pred CC-cccc------cHHHHHhcCcCcEEEEEEcC
Confidence 75 5543 35688999999999987653
No 77
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.81 E-value=1.4e-08 Score=98.94 Aligned_cols=91 Identities=25% Similarity=0.288 Sum_probs=73.3
Q ss_pred CCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------C-CcEEeccCCCCCCCCCceeEEEEcCceeecc---
Q 010086 117 SAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------K-PLVISGEGHRIPFDGNTFDFVFVGGARLEKA--- 182 (518)
Q Consensus 117 ~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------~-~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~--- 182 (518)
..-|||||||+|.....|.+.| ...+|+|+|++ . .+..+.-.+-|||+.++||.|+|..+ ++|+
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISA-vQWLcnA 128 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISA-VQWLCNA 128 (270)
T ss_pred CcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeee-eeeeccc
Confidence 6789999999999999999888 78999999963 1 12233446889999999999999887 6665
Q ss_pred ----CChH----HHHHHHHhcccCCcEEEEEecCC
Q 010086 183 ----SKPL----DFASEIVRTLKPEGFAVVHVRAK 209 (518)
Q Consensus 183 ----~dp~----~~l~Ei~RVLKPGG~lvi~~~~~ 209 (518)
.+|. .++.-++.+||+|+..++++...
T Consensus 129 ~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 129 DKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred CccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 2454 36788999999999999998643
No 78
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.80 E-value=2.7e-08 Score=101.67 Aligned_cols=86 Identities=15% Similarity=0.063 Sum_probs=65.1
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCC--------------Cc--EEeccCCCCCCCCCceeEEEEcCc
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSK--------------PL--VISGEGHRIPFDGNTFDFVFVGGA 177 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~--------------~l--~~~~da~~LPf~D~SFD~V~s~~~ 177 (518)
..++.+|||+|||+|..+..+++.|..+|+|+|+++.. .. ...++ ..++.+++||+|+++..
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~--~~~~~~~~fDlVvan~~ 234 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY--LEQPIEGKADVIVANIL 234 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc--cccccCCCceEEEEecC
Confidence 45789999999999999988888886799999998420 11 12222 34556789999999763
Q ss_pred eeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 178 RLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
.++ ...++.++.|+|||||.+++.
T Consensus 235 -~~~---l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 235 -AEV---IKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred -HHH---HHHHHHHHHHHcCCCcEEEEE
Confidence 332 346889999999999999886
No 79
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.80 E-value=5.1e-08 Score=91.96 Aligned_cols=111 Identities=17% Similarity=0.261 Sum_probs=74.6
Q ss_pred CCCeEEEEcCCCCHhHHHHHhcCC-CcEEEEecCCC--------------C-CcEEeccCCCCCCCCCceeEEEEcCcee
Q 010086 116 QSAKSLCVETQYGQDVFALKEIGV-EDSIGIFKKSS--------------K-PLVISGEGHRIPFDGNTFDFVFVGGARL 179 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~g~-~~v~gID~s~~--------------~-~l~~~~da~~LPf~D~SFD~V~s~~~~l 179 (518)
++.++||+|||+|..+..+++.+. .+|+++|+++. . ..++.+|..+ +++++.||+|+|+-= +
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP-~ 108 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPP-F 108 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE----S
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccc-h
Confidence 678999999999999988887653 36999999841 1 2234555533 455899999999753 4
Q ss_pred eccCC-----hHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEE
Q 010086 180 EKASK-----PLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKS 229 (518)
Q Consensus 180 ~~~~d-----p~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~ 229 (518)
+.-.+ ..+++++..+.|||||.+++.......+. ..+.++|.+.+++.-
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~-~~l~~~f~~~~~~~~ 162 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYE-RLLKELFGDVEVVAK 162 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHH-HHHHHHHS--EEEEE
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChH-HHHHHhcCCEEEEEE
Confidence 33322 35789999999999999987665443332 236667776655543
No 80
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.79 E-value=1.7e-08 Score=100.89 Aligned_cols=114 Identities=15% Similarity=0.175 Sum_probs=73.4
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCCCcE-----E-ec--cCCCCCCCCCceeEEEEcCceeeccCCh
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSKPLV-----I-SG--EGHRIPFDGNTFDFVFVGGARLEKASKP 185 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~~l~-----~-~~--da~~LPf~D~SFD~V~s~~~~l~~~~dp 185 (518)
+.++.+|||+|||+|..+..+++.|...++|+|+++..... . .+ +...++..+.+||+|+++.. .+. .
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~-~~~---~ 192 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANIL-ANP---L 192 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCc-HHH---H
Confidence 46789999999999999888888876679999998521100 0 00 11223334448999999753 221 3
Q ss_pred HHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhcc--CccEEEEeccC
Q 010086 186 LDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFN--SCKLVKSRDID 233 (518)
Q Consensus 186 ~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~--~~~~v~~~~v~ 233 (518)
..++.++.|+|||||++++.-.... ....+...+. .++++....-+
T Consensus 193 ~~l~~~~~~~LkpgG~lilsgi~~~--~~~~v~~~l~~~Gf~~~~~~~~~ 240 (250)
T PRK00517 193 LELAPDLARLLKPGGRLILSGILEE--QADEVLEAYEEAGFTLDEVLERG 240 (250)
T ss_pred HHHHHHHHHhcCCCcEEEEEECcHh--hHHHHHHHHHHCCCEEEEEEEeC
Confidence 4678999999999999998732111 1123333333 36666666543
No 81
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.79 E-value=3e-08 Score=96.78 Aligned_cols=86 Identities=10% Similarity=-0.033 Sum_probs=67.7
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCc
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGA 177 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~ 177 (518)
+.++.++||+|||+|..+..+++.+ ..++|+|+++. ...+..+|.++++ ++||+|++..+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~-~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~ 128 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV 128 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhH
Confidence 3568899999999999998888776 59999999841 1224567777766 89999999887
Q ss_pred eeeccCC--hHHHHHHHHhcccCCcEEEE
Q 010086 178 RLEKASK--PLDFASEIVRTLKPEGFAVV 204 (518)
Q Consensus 178 ~l~~~~d--p~~~l~Ei~RVLKPGG~lvi 204 (518)
++|++. +..+++++.|++|+|+++.+
T Consensus 129 -l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 129 -LIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred -HHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 888753 45789999999997766554
No 82
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.79 E-value=2.3e-08 Score=106.02 Aligned_cols=94 Identities=21% Similarity=0.259 Sum_probs=70.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------CCcEEeccCCCC--CCCCCceeEEEEcC
Q 010086 115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------KPLVISGEGHRI--PFDGNTFDFVFVGG 176 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------~~l~~~~da~~L--Pf~D~SFD~V~s~~ 176 (518)
..+..+||||||+|..+..+++. +...++|+|+++. ...++++|+..+ +|++++||.|++..
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 34568999999999999888764 3469999999731 122468888765 68999999999865
Q ss_pred ceeeccCCh------HHHHHHHHhcccCCcEEEEEecCC
Q 010086 177 ARLEKASKP------LDFASEIVRTLKPEGFAVVHVRAK 209 (518)
Q Consensus 177 ~~l~~~~dp------~~~l~Ei~RVLKPGG~lvi~~~~~ 209 (518)
. ..|...+ ..+++|+.|+|||||.+.+.+...
T Consensus 201 P-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 201 P-VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred C-CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 3 2222111 478999999999999999987543
No 83
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.78 E-value=9e-09 Score=89.71 Aligned_cols=91 Identities=20% Similarity=0.268 Sum_probs=67.7
Q ss_pred CCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCC--CCCCceeEEEEcCce
Q 010086 117 SAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIP--FDGNTFDFVFVGGAR 178 (518)
Q Consensus 117 ~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LP--f~D~SFD~V~s~~~~ 178 (518)
|.+|||+|||+|..+..+.+.+..+++|+|+++. ...++.+|...++ +++++||+|+++--+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 5689999999999998877766679999999841 2245678887775 899999999997641
Q ss_pred eeccCC-------hHHHHHHHHhcccCCcEEEEEec
Q 010086 179 LEKASK-------PLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 179 l~~~~d-------p~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
..+..+ -..+++++.|.|||||++++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 222111 13679999999999999988764
No 84
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.78 E-value=3.4e-08 Score=102.75 Aligned_cols=104 Identities=16% Similarity=0.177 Sum_probs=77.0
Q ss_pred HHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------C-CcEEeccCCCCCCCCCc
Q 010086 104 VFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------K-PLVISGEGHRIPFDGNT 168 (518)
Q Consensus 104 l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~-~l~~~~da~~LPf~D~S 168 (518)
+.+.++....++++.++||.|||||..+..++..| ..++|+|+++. . ..+..+|+.++|+++++
T Consensus 170 la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~ 248 (329)
T TIGR01177 170 LARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSES 248 (329)
T ss_pred HHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCC
Confidence 33344444456889999999999999887666666 68999999741 1 23568999999999999
Q ss_pred eeEEEEcCc-----eeec--c-CChHHHHHHHHhcccCCcEEEEEecC
Q 010086 169 FDFVFVGGA-----RLEK--A-SKPLDFASEIVRTLKPEGFAVVHVRA 208 (518)
Q Consensus 169 FD~V~s~~~-----~l~~--~-~dp~~~l~Ei~RVLKPGG~lvi~~~~ 208 (518)
||+|++.-- .... . ....++++++.|+|||||++++.+..
T Consensus 249 ~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 249 VDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred CCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 999999521 0111 1 11357899999999999999887654
No 85
>PRK14968 putative methyltransferase; Provisional
Probab=98.75 E-value=9.3e-08 Score=89.94 Aligned_cols=90 Identities=22% Similarity=0.296 Sum_probs=66.2
Q ss_pred CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------C---CcEEeccCCCCCCCCCceeEEEEcCc
Q 010086 115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------K---PLVISGEGHRIPFDGNTFDFVFVGGA 177 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~---~l~~~~da~~LPf~D~SFD~V~s~~~ 177 (518)
.++.++||+|||+|..+..+.+.+ .+++|+|+++. . ..++.+|..+ ++++++||+|++...
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCC
Confidence 577899999999999998887775 79999999741 1 2234555544 566779999998653
Q ss_pred eeec---------------------cCChHHHHHHHHhcccCCcEEEEEec
Q 010086 178 RLEK---------------------ASKPLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 178 ~l~~---------------------~~dp~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
+.+ ......+++++.|+|||||.+++...
T Consensus 100 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 100 -YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred -cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 211 01134578999999999999887754
No 86
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.73 E-value=8.2e-08 Score=100.67 Aligned_cols=109 Identities=15% Similarity=0.060 Sum_probs=76.5
Q ss_pred CCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCceee
Q 010086 116 QSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGARLE 180 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~ 180 (518)
..++|||+|||+|..+..+.+.+ ..+++++|+++. ...++.+|..+ ..++.||+|+|+.- ||
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPP-FH 272 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS--DIKGRFDMIISNPP-FH 272 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccCCCccEEEECCC-cc
Confidence 35689999999999998887653 358999999741 11234455433 34689999999876 77
Q ss_pred ccC-----ChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEE
Q 010086 181 KAS-----KPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVK 228 (518)
Q Consensus 181 ~~~-----dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~ 228 (518)
+.. ...++++++.|.|||||.+++.....-.|. .-+.+.|.+++++.
T Consensus 273 ~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~-~~l~~~Fg~~~~la 324 (342)
T PRK09489 273 DGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYP-DLLDETFGSHEVLA 324 (342)
T ss_pred CCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChH-HHHHHHcCCeEEEE
Confidence 532 346889999999999999988765443342 23344577766554
No 87
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.70 E-value=2e-08 Score=93.93 Aligned_cols=53 Identities=30% Similarity=0.408 Sum_probs=49.4
Q ss_pred cEEeccCCCCCCCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086 153 LVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 153 l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
.++++|++++||++++||+|++..+ ++|++|+.++++|++|+|||||.+++..
T Consensus 29 ~~~~~d~~~lp~~~~~fD~v~~~~~-l~~~~d~~~~l~ei~rvLkpGG~l~i~d 81 (160)
T PLN02232 29 EWIEGDAIDLPFDDCEFDAVTMGYG-LRNVVDRLRAMKEMYRVLKPGSRVSILD 81 (160)
T ss_pred EEEEechhhCCCCCCCeeEEEecch-hhcCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence 4678999999999999999999987 9999999999999999999999998874
No 88
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.69 E-value=1.2e-07 Score=92.23 Aligned_cols=91 Identities=19% Similarity=0.166 Sum_probs=67.1
Q ss_pred HHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEE
Q 010086 109 ISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVF 173 (518)
Q Consensus 109 ~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~ 173 (518)
.+..-++++.+|||||||+|..+..+++.+ .+++++|+++. ...++.+|..+...++++||+|+
T Consensus 71 ~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~ 149 (212)
T PRK00312 71 TELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRIL 149 (212)
T ss_pred HHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEE
Confidence 333346788999999999999988777764 58999998731 12245666644322458999999
Q ss_pred EcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086 174 VGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 174 s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
+..+ ++++ .+++.+.|||||++++.+.
T Consensus 150 ~~~~-~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 150 VTAA-APEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EccC-chhh------hHHHHHhcCCCcEEEEEEc
Confidence 9875 6654 3567899999999999876
No 89
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.67 E-value=1.7e-07 Score=89.32 Aligned_cols=87 Identities=18% Similarity=0.180 Sum_probs=64.5
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCc
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGA 177 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~ 177 (518)
+.++.+|||||||+|..+..+.+.+ ..+++++|+++. ...++.+++. .++ +++||+|++...
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~ 106 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGS 106 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCC
Confidence 4578899999999999998777643 358999999742 1123455553 344 358999999764
Q ss_pred eeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086 178 RLEKASKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
.++ ....++++.|+|||||++++..
T Consensus 107 -~~~---~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 107 -GGN---LTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred -ccC---HHHHHHHHHHhcCCCeEEEEEE
Confidence 433 4568899999999999998864
No 90
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.67 E-value=1.2e-07 Score=97.41 Aligned_cols=95 Identities=16% Similarity=0.076 Sum_probs=71.1
Q ss_pred HHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeE
Q 010086 108 LISEGYLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDF 171 (518)
Q Consensus 108 L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~ 171 (518)
+.+..-++++.++||||||+|..+..+.+. +..+++++|.... ...++.+|..+.++++ +|+
T Consensus 141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~ 218 (306)
T TIGR02716 141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADA 218 (306)
T ss_pred HHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCE
Confidence 344444677889999999999999877664 3358999996310 1124578887777765 599
Q ss_pred EEEcCceeeccCCh--HHHHHHHHhcccCCcEEEEE
Q 010086 172 VFVGGARLEKASKP--LDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 172 V~s~~~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi~ 205 (518)
|++... +|++.+. .+.+++++|+|||||++++.
T Consensus 219 v~~~~~-lh~~~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 219 VLFCRI-LYSANEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred EEeEhh-hhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 998886 8877654 36899999999999999886
No 91
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.67 E-value=1.1e-07 Score=100.80 Aligned_cols=109 Identities=10% Similarity=0.140 Sum_probs=75.1
Q ss_pred CCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC-------------CC-----cEEeccCCCCCCCCCceeEEEEcCc
Q 010086 117 SAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS-------------KP-----LVISGEGHRIPFDGNTFDFVFVGGA 177 (518)
Q Consensus 117 ~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~-------------~~-----l~~~~da~~LPf~D~SFD~V~s~~~ 177 (518)
+.+|||+|||+|..+..+.+.+ ..+|+++|+|+. .. .+..+|... .+++++||+|+|+--
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcC
Confidence 4699999999999998887653 469999999831 11 123444432 245679999999764
Q ss_pred eeecc---CC--hHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEE
Q 010086 178 RLEKA---SK--PLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVK 228 (518)
Q Consensus 178 ~l~~~---~d--p~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~ 228 (518)
||.. .+ ..++++++.|+|||||.+++.....-.|. ..+.++|.+++++.
T Consensus 308 -fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~-~~L~~~fg~~~~va 361 (378)
T PRK15001 308 -FHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYF-HKLKKIFGNCTTIA 361 (378)
T ss_pred -cccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHH-HHHHHHcCCceEEc
Confidence 5432 11 24788999999999999988865443332 34555677776653
No 92
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.67 E-value=5.6e-08 Score=96.28 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=83.5
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------------------CCcEEeccCCCCC
Q 010086 111 EGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------------------KPLVISGEGHRIP 163 (518)
Q Consensus 111 ~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------------------~~l~~~~da~~LP 163 (518)
...+.++.+||+.|||.|..+..|++.| .+|+|+|+|+. ...+.++|.-+++
T Consensus 38 ~l~~~~~~rvLvPgCGkg~D~~~LA~~G-~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~ 116 (226)
T PRK13256 38 KLNINDSSVCLIPMCGCSIDMLFFLSKG-VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP 116 (226)
T ss_pred hcCCCCCCeEEEeCCCChHHHHHHHhCC-CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence 3344567899999999999999999999 47999999841 1123578888886
Q ss_pred CC---CCceeEEEEcCceeeccCCh--HHHHHHHHhcccCCcEEEEEe-cCC-----Ccc--CchhHhhhccC-ccEEEE
Q 010086 164 FD---GNTFDFVFVGGARLEKASKP--LDFASEIVRTLKPEGFAVVHV-RAK-----DEY--SFNSFLDLFNS-CKLVKS 229 (518)
Q Consensus 164 f~---D~SFD~V~s~~~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi~~-~~~-----~~~--s~~~~~~lf~~-~~~v~~ 229 (518)
.. -+.||+|+-..+ |++++.. .+.++-+.+.|||||.+++.+ ... +++ +...+.++|.. |++..+
T Consensus 117 ~~~~~~~~fD~VyDra~-~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~~~~~i~~l 195 (226)
T PRK13256 117 KIANNLPVFDIWYDRGA-YIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFSAKIKFELI 195 (226)
T ss_pred ccccccCCcCeeeeehh-HhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhccCCceEEEe
Confidence 42 268999999886 8888532 367899999999999876653 211 122 33456667743 444443
Q ss_pred e
Q 010086 230 R 230 (518)
Q Consensus 230 ~ 230 (518)
.
T Consensus 196 ~ 196 (226)
T PRK13256 196 D 196 (226)
T ss_pred e
Confidence 3
No 93
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.67 E-value=1.8e-07 Score=96.08 Aligned_cols=121 Identities=20% Similarity=0.324 Sum_probs=80.3
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCcee
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGARL 179 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l 179 (518)
..++.+|||||||||-++.+.+++|..+|+|+|+++. ...+.... ......+.||+|+++- +
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~~~~~~dlvvANI--~ 234 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SEDLVEGKFDLVVANI--L 234 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSCTCCS-EEEEEEES---
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--ecccccccCCEEEECC--C
Confidence 5688999999999999998888899889999999752 11111111 2234569999999976 3
Q ss_pred eccCChHHHHHHHHhcccCCcEEEEE-ecCCCccCchhHhhhcc-CccEEEEeccCCCCCCccceeEEEEeec
Q 010086 180 EKASKPLDFASEIVRTLKPEGFAVVH-VRAKDEYSFNSFLDLFN-SCKLVKSRDIDGIDSSLPYIREIVLKKE 250 (518)
Q Consensus 180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~-~~~~~~~s~~~~~~lf~-~~~~v~~~~v~~~~~~~p~~~~vv~kK~ 250 (518)
.++ ....+..+.+.|||||++++. +-.... ..+...|+ .++++....-+ +|. .+++||+
T Consensus 235 ~~v--L~~l~~~~~~~l~~~G~lIlSGIl~~~~---~~v~~a~~~g~~~~~~~~~~--~W~-----~l~~~Kk 295 (295)
T PF06325_consen 235 ADV--LLELAPDIASLLKPGGYLILSGILEEQE---DEVIEAYKQGFELVEEREEG--EWV-----ALVFKKK 295 (295)
T ss_dssp HHH--HHHHHHHCHHHEEEEEEEEEEEEEGGGH---HHHHHHHHTTEEEEEEEEET--TEE-----EEEEEE-
T ss_pred HHH--HHHHHHHHHHhhCCCCEEEEccccHHHH---HHHHHHHHCCCEEEEEEEEC--CEE-----EEEEEeC
Confidence 332 245678899999999999996 322221 23444443 67777777654 443 4677774
No 94
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.66 E-value=1.7e-07 Score=91.36 Aligned_cols=83 Identities=11% Similarity=0.004 Sum_probs=62.4
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCc
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGA 177 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~ 177 (518)
..++.+|||||||+|..+..|.+.+ ..++|+|+++. ...+..+| ++..+++||+|++..+
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~ 136 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRG-AKVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDV 136 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcch
Confidence 3567899999999999998888877 57999999741 01223444 5667899999999987
Q ss_pred eeeccCCh--HHHHHHHHhcccCCcE
Q 010086 178 RLEKASKP--LDFASEIVRTLKPEGF 201 (518)
Q Consensus 178 ~l~~~~dp--~~~l~Ei~RVLKPGG~ 201 (518)
++|++++ ...++++.+.+++|++
T Consensus 137 -l~~~~~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 137 -LIHYPQEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred -hhcCCHHHHHHHHHHHHhhcCCeEE
Confidence 8887755 3678888887754444
No 95
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.65 E-value=1.2e-07 Score=77.56 Aligned_cols=86 Identities=22% Similarity=0.290 Sum_probs=67.5
Q ss_pred eEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCC-CCCceeEEEEcCceeec-
Q 010086 119 KSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPF-DGNTFDFVFVGGARLEK- 181 (518)
Q Consensus 119 rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf-~D~SFD~V~s~~~~l~~- 181 (518)
++||+|||+|..+..+.+.+..+++++|+++. ...+..+|..+.+. ..++||+|++... +++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~-~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPP-LHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccc-eeeh
Confidence 58999999999987777644579999998741 11234566666543 6788999999987 777
Q ss_pred cCChHHHHHHHHhcccCCcEEEEE
Q 010086 182 ASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 182 ~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
...+...++.+.+.|||||.+++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 667788999999999999999875
No 96
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.65 E-value=1.6e-07 Score=96.60 Aligned_cols=111 Identities=11% Similarity=0.075 Sum_probs=76.6
Q ss_pred HHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcC--CCcEEEEecCCC-------------CCc---EE
Q 010086 94 WIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIG--VEDSIGIFKKSS-------------KPL---VI 155 (518)
Q Consensus 94 wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g--~~~v~gID~s~~-------------~~l---~~ 155 (518)
+|...+++....+++.+. ++++.+|||+|||||..+..|.+.. ..+++|+|+|+. +.. .+
T Consensus 43 tr~E~~il~~~~~~ia~~--~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i 120 (301)
T TIGR03438 43 TRTEAAILERHADEIAAA--TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGI 120 (301)
T ss_pred HHHHHHHHHHHHHHHHHh--hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEE
Confidence 455556666666655542 4577899999999999988776642 368999999851 221 35
Q ss_pred eccCCC-CCCCCCc----eeEEEEcCceeeccCC--hHHHHHHHHhcccCCcEEEEEec
Q 010086 156 SGEGHR-IPFDGNT----FDFVFVGGARLEKASK--PLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 156 ~~da~~-LPf~D~S----FD~V~s~~~~l~~~~d--p~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
++|..+ ++++... ..++++... ++|++. ...++++++++|+|||.+++.+.
T Consensus 121 ~gD~~~~~~~~~~~~~~~~~~~~~gs~-~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 121 CADFTQPLALPPEPAAGRRLGFFPGST-IGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred EEcccchhhhhcccccCCeEEEEeccc-ccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 778765 4554432 344444444 777753 34689999999999999998763
No 97
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.63 E-value=2.9e-08 Score=106.84 Aligned_cols=85 Identities=20% Similarity=0.189 Sum_probs=62.0
Q ss_pred eEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---CC--cE--------E--eccCCCCCCCCCceeEEEEcCceeeccC
Q 010086 119 KSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---KP--LV--------I--SGEGHRIPFDGNTFDFVFVGGARLEKAS 183 (518)
Q Consensus 119 rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---~~--l~--------~--~~da~~LPf~D~SFD~V~s~~~~l~~~~ 183 (518)
.+||||||+|.++..|.+.+ |+.+-+.+. +. .+ + ..-.+.||||+++||+|-|+.....+.+
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~---V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~ 196 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERN---VTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHP 196 (506)
T ss_pred EEEeccceeehhHHHHhhCC---ceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchh
Confidence 68999999999998888765 333333221 11 11 1 1235789999999999999886345555
Q ss_pred ChHHHHHHHHhcccCCcEEEEEe
Q 010086 184 KPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 184 dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
+-...+-|+.|||||||+++..-
T Consensus 197 ~~g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 197 NDGFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred cccceeehhhhhhccCceEEecC
Confidence 55678899999999999998863
No 98
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.62 E-value=2.3e-07 Score=89.46 Aligned_cols=90 Identities=20% Similarity=0.259 Sum_probs=67.2
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHh-cC-CCcEEEEecCCC------------C----CcEEeccCCC-CCCCCCceeEEE
Q 010086 113 YLSQSAKSLCVETQYGQDVFALKE-IG-VEDSIGIFKKSS------------K----PLVISGEGHR-IPFDGNTFDFVF 173 (518)
Q Consensus 113 ll~~~~rvLDVGcGtG~~~~~L~~-~g-~~~v~gID~s~~------------~----~l~~~~da~~-LPf~D~SFD~V~ 173 (518)
-+.++.++||+|||+|..+..+++ .+ ..+++++|+++. . ..++.+|+.+ ++..++.||.|+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~ 116 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIF 116 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence 467889999999999998876654 33 358999999741 1 1234677765 344457899999
Q ss_pred EcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086 174 VGGARLEKASKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 174 s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
+... ..++..+++++.|+|||||++++.+
T Consensus 117 ~~~~----~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 117 IGGG----SEKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred ECCC----cccHHHHHHHHHHHcCCCcEEEEEe
Confidence 9542 2357789999999999999998754
No 99
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.62 E-value=1.4e-06 Score=95.86 Aligned_cols=289 Identities=18% Similarity=0.218 Sum_probs=156.8
Q ss_pred CCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086 116 QSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGAR 178 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~~ 178 (518)
++.+|||+|||+|..+..++. .+..+++|+|+|+. ...++++|..+ ++++++||+|+|+--+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 346899999999999877764 34468999999841 01234566432 3456789999995311
Q ss_pred ee-------------cc--------CC----hHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhcc--CccEEEEe-
Q 010086 179 LE-------------KA--------SK----PLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFN--SCKLVKSR- 230 (518)
Q Consensus 179 l~-------------~~--------~d----p~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~--~~~~v~~~- 230 (518)
+. |- .+ ..+.++++.++|||||.+++.++.... ..+..++. .|+.+.+.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~---~~v~~~~~~~g~~~~~~~~ 293 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQE---EAVTQIFLDHGYNIESVYK 293 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchH---HHHHHHHHhcCCCceEEEe
Confidence 11 10 01 123567889999999999998765433 33444433 23333322
Q ss_pred ccCCCCCCccceeEEEEeeccccccccccCCCCCccccCC-CCchhhHHHHHhcCcccccCCCChhhhhhhhhcccccCC
Q 010086 231 DIDGIDSSLPYIREIVLKKESDLILGHRENLPDGNVANKC-SVPGYKQAFVRKAEPLIMEEPLKPWITMKRNIKNIKYLP 309 (518)
Q Consensus 231 ~v~~~~~~~p~~~~vv~kK~~~~~~~~~~~~~~~~~~~~C-~~~~~k~~~l~~~Epli~E~~~~~~~~~~~~~~~~~ylp 309 (518)
...|.+ | ++.--.... .. +-.+.+- .+...-+.+++..-|.+.-...+
T Consensus 294 D~~g~~------R-~v~~~~~~~------~r--s~~rr~g~~~~~~q~~~~e~~~p~~~i~~ek---------------- 342 (506)
T PRK01544 294 DLQGHS------R-VILISPINL------NR--SYARRIGKSLSGVQQNLLDNELPKYLFSKEK---------------- 342 (506)
T ss_pred cCCCCc------e-EEEeccccC------Cc--ceeccCCCCCCHHHHHHHHhhhhhhCCCHHH----------------
Confidence 222111 1 111110000 00 0001111 23333445555555544432111
Q ss_pred cccccccCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHh------hccCCceEEEeecee-----
Q 010086 310 SMADISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEE------YKVKKKVKLLPYAAW----- 378 (518)
Q Consensus 310 ~~~d~s~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~------~~~~~~V~~~~~Av~----- 378 (518)
+. -+.+++++|+|.+ .|..+ -...+.+|.. .+.++|.......+ -.+..|+.++...+.
T Consensus 343 -lf---~~~~p~~lEIG~G-~G~~~-~~~A~~~p~~----~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~ 412 (506)
T PRK01544 343 -LV---NEKRKVFLEIGFG-MGEHF-INQAKMNPDA----LFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILND 412 (506)
T ss_pred -hC---CCCCceEEEECCC-chHHH-HHHHHhCCCC----CEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHh
Confidence 11 2468999999999 48755 5666778843 88999998763221 124578887765321
Q ss_pred ecCCceE-EEecC-CCCcchhhcccCCccccccccCCCCCCCCCcceeecccHHHHHhhcCCCCCeEEEEeeccchhhhh
Q 010086 379 VRNETLS-FQINH-DPDKEVVVKGRGMGRIQPVQSLSDGGFDGEVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDL 456 (518)
Q Consensus 379 ~~~~tl~-f~~~~-~~~~~~~~~~~g~~~i~p~~~~~~~~~~g~~~~v~~vd~s~wl~~~v~~~D~VVlKMDIEGaE~~v 456 (518)
..++++. ++++= ||.. +. ..-+ ..+-.-+|.+.+...+++.-.+-+|=|.+.-=...
T Consensus 413 ~~~~sv~~i~i~FPDPWp------------------Kk--rh~k-rRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~ 471 (506)
T PRK01544 413 LPNNSLDGIYILFPDPWI------------------KN--KQKK-KRIFNKERLKILQDKLKDNGNLVFASDIENYFYEA 471 (506)
T ss_pred cCcccccEEEEECCCCCC------------------CC--CCcc-ccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence 1122221 11111 1211 10 0111 22334467777777788888889999999744445
Q ss_pred HHHHHhcCCccccc
Q 010086 457 IPRLFETGAICLID 470 (518)
Q Consensus 457 L~~l~~~g~i~~ID 470 (518)
++.+.+.+.+..+.
T Consensus 472 ~~~~~~~~~f~~~~ 485 (506)
T PRK01544 472 IELIQQNGNFEIIN 485 (506)
T ss_pred HHHHHhCCCeEecc
Confidence 66666666665543
No 100
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=1.3e-07 Score=96.82 Aligned_cols=113 Identities=18% Similarity=0.280 Sum_probs=78.0
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCC-------------CcEEec-cCCCCCCCC-CceeEEEEcCc
Q 010086 113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSK-------------PLVISG-EGHRIPFDG-NTFDFVFVGGA 177 (518)
Q Consensus 113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~-------------~l~~~~-da~~LPf~D-~SFD~V~s~~~ 177 (518)
+++++.+|||+|||+|-++.+.+++|...|+|+|+.+-. ....+. -...+..+. +.||+|+++-
T Consensus 159 ~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI- 237 (300)
T COG2264 159 LLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI- 237 (300)
T ss_pred hhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-
Confidence 345899999999999999999999998899999997521 001111 112233444 5999999975
Q ss_pred eeeccCCh-HHHHHHHHhcccCCcEEEEE-ecCCCccCchhHhhhc--cCccEEEEeccC
Q 010086 178 RLEKASKP-LDFASEIVRTLKPEGFAVVH-VRAKDEYSFNSFLDLF--NSCKLVKSRDID 233 (518)
Q Consensus 178 ~l~~~~dp-~~~l~Ei~RVLKPGG~lvi~-~~~~~~~s~~~~~~lf--~~~~~v~~~~v~ 233 (518)
|- +| .+++.++.|.|||||++++. +-... ...+.+-+ ..++++.....+
T Consensus 238 -LA---~vl~~La~~~~~~lkpgg~lIlSGIl~~q---~~~V~~a~~~~gf~v~~~~~~~ 290 (300)
T COG2264 238 -LA---EVLVELAPDIKRLLKPGGRLILSGILEDQ---AESVAEAYEQAGFEVVEVLERE 290 (300)
T ss_pred -hH---HHHHHHHHHHHHHcCCCceEEEEeehHhH---HHHHHHHHHhCCCeEeEEEecC
Confidence 33 34 36789999999999999986 32111 13444444 467788777654
No 101
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.52 E-value=6.8e-07 Score=88.15 Aligned_cols=92 Identities=15% Similarity=0.212 Sum_probs=65.6
Q ss_pred CCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCce-
Q 010086 116 QSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGAR- 178 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~~- 178 (518)
.+.+|||+|||+|..+..+++. +...++|+|+++. ...++.+|..+ ++++++||+|++.--+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence 4569999999999999888764 3358999998741 12245677765 6788999999985310
Q ss_pred ----eeccC------C--------------hHHHHHHHHhcccCCcEEEEEecC
Q 010086 179 ----LEKAS------K--------------PLDFASEIVRTLKPEGFAVVHVRA 208 (518)
Q Consensus 179 ----l~~~~------d--------------p~~~l~Ei~RVLKPGG~lvi~~~~ 208 (518)
++++. . -..+++++.|+|||||.+++..+.
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~ 219 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY 219 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence 11111 0 125678999999999999997653
No 102
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.51 E-value=3.6e-07 Score=88.23 Aligned_cols=90 Identities=16% Similarity=0.134 Sum_probs=63.9
Q ss_pred CCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------CC--cEEeccCCCCCCCCCceeEEEEcCceeeccC
Q 010086 117 SAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------KP--LVISGEGHRIPFDGNTFDFVFVGGARLEKAS 183 (518)
Q Consensus 117 ~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------~~--l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~ 183 (518)
-.++|++|||.|.++..|+... .+++++|+++. .+ .+++++..+ ..|++.||+|+.+.+ +..+.
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~-~~P~~~FDLIV~SEV-lYYL~ 120 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGLPHVEWIQADVPE-FWPEGRFDLIVLSEV-LYYLD 120 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES--GGGSS
T ss_pred cceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCC-CCCCCCeeEEEEehH-hHcCC
Confidence 3689999999999999998875 79999999841 12 245666644 368999999999987 77776
Q ss_pred Ch---HHHHHHHHhcccCCcEEEEEecCC
Q 010086 184 KP---LDFASEIVRTLKPEGFAVVHVRAK 209 (518)
Q Consensus 184 dp---~~~l~Ei~RVLKPGG~lvi~~~~~ 209 (518)
+. ..++..+...|+|||.+++....+
T Consensus 121 ~~~~L~~~l~~l~~~L~pgG~LV~g~~rd 149 (201)
T PF05401_consen 121 DAEDLRAALDRLVAALAPGGHLVFGHARD 149 (201)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 53 357899999999999999976443
No 103
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.49 E-value=1.3e-07 Score=99.78 Aligned_cols=91 Identities=25% Similarity=0.259 Sum_probs=79.1
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCc
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGA 177 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~ 177 (518)
+.++.+++|+|||-|......+..+...++|+|.+.+ ...++.++..+.||+|++||+|.+..+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 5678899999999999998888776678999998742 122456888899999999999999997
Q ss_pred eeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 178 RLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
..|.+++..+++|+.||+||||+.+.-
T Consensus 188 -~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 188 -VCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred -cccCCcHHHHHHHHhcccCCCceEEeH
Confidence 999999999999999999999998885
No 104
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.48 E-value=8.5e-07 Score=92.05 Aligned_cols=82 Identities=11% Similarity=0.028 Sum_probs=58.1
Q ss_pred CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------C-----------CcEEeccCCCCCCCCCceeEEEEc
Q 010086 116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------K-----------PLVISGEGHRIPFDGNTFDFVFVG 175 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------~-----------~l~~~~da~~LPf~D~SFD~V~s~ 175 (518)
++.+|||||||+|..+..|.+.| .+|+|+|+|+. . ..+..+|.+. .+++||+|+|.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~---l~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES---LSGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh---cCCCcCEEEEc
Confidence 57899999999999999998887 69999999852 0 0122344333 36899999999
Q ss_pred CceeeccCChH--HHHHHHHhcccCCcEEE
Q 010086 176 GARLEKASKPL--DFASEIVRTLKPEGFAV 203 (518)
Q Consensus 176 ~~~l~~~~dp~--~~l~Ei~RVLKPGG~lv 203 (518)
.+ ++|+++.. .+++.+.+ +++||+++
T Consensus 220 ~v-L~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 220 DV-LIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred CE-EEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 97 88887643 34555554 45665544
No 105
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.47 E-value=9.5e-07 Score=91.94 Aligned_cols=95 Identities=13% Similarity=0.153 Sum_probs=69.4
Q ss_pred HHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcC--CCcEEEEecCCC---------------CCcEEeccCCCCCCCCCc
Q 010086 106 QDLISEGYLSQSAKSLCVETQYGQDVFALKEIG--VEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNT 168 (518)
Q Consensus 106 ~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g--~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~S 168 (518)
..+++..-++++.+|||||||+|..+..+++.. ...|+|+|+++. ...++.+|+...+.+.+.
T Consensus 70 a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 70 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence 333333346788999999999999998877642 136999998742 122457888777766788
Q ss_pred eeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086 169 FDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 169 FD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
||+|++..+ ++++ ...+.++|||||.+++.+.
T Consensus 150 fD~Ii~~~g-~~~i------p~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 150 YDVIFVTVG-VDEV------PETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred ccEEEECCc-hHHh------HHHHHHhcCCCCEEEEEeC
Confidence 999999875 5553 2357889999999988764
No 106
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.47 E-value=1.1e-06 Score=84.50 Aligned_cols=89 Identities=17% Similarity=0.125 Sum_probs=62.3
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------CCcEEeccCCC-CCCCCCceeEEEEcC
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------KPLVISGEGHR-IPFDGNTFDFVFVGG 176 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------~~l~~~~da~~-LPf~D~SFD~V~s~~ 176 (518)
++++.+|||+|||+|..+..+++. +..+++++|+++. ...++.+|+.+ ++.-...+|.++...
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~ 117 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG 117 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC
Confidence 567899999999999998777653 2368999999741 11244566643 232223467665532
Q ss_pred ceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086 177 ARLEKASKPLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
..+...+++++.|+|||||.+++...
T Consensus 118 -----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 118 -----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred -----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 12456889999999999999988764
No 107
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.46 E-value=1.9e-06 Score=82.13 Aligned_cols=114 Identities=18% Similarity=0.247 Sum_probs=78.4
Q ss_pred CCCCC-eEEEEcCCCCHhHHHHHhcCCC-cEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEc
Q 010086 114 LSQSA-KSLCVETQYGQDVFALKEIGVE-DSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVG 175 (518)
Q Consensus 114 l~~~~-rvLDVGcGtG~~~~~L~~~g~~-~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~ 175 (518)
+.+.+ +|||+|||+|.+...|++.|+. ..+|+|.|+. ...+.+.|...-.|..+.||+|...
T Consensus 64 v~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDK 143 (227)
T KOG1271|consen 64 VSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDK 143 (227)
T ss_pred hcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeec
Confidence 34444 9999999999999999998865 4999998842 1235577777667888999999987
Q ss_pred CceeeccC--------ChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEEec
Q 010086 176 GARLEKAS--------KPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRD 231 (518)
Q Consensus 176 ~~~l~~~~--------dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~ 231 (518)
+. ++-+. .+...+.-+.+.|+|||+++|+.= ... ...+.+.|-+..+++...
T Consensus 144 GT-~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC--N~T-~dELv~~f~~~~f~~~~t 203 (227)
T KOG1271|consen 144 GT-LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC--NFT-KDELVEEFENFNFEYLST 203 (227)
T ss_pred Cc-eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec--Ccc-HHHHHHHHhcCCeEEEEe
Confidence 75 54432 122356888999999999999742 111 134444455544444433
No 108
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.40 E-value=1e-06 Score=88.38 Aligned_cols=88 Identities=18% Similarity=0.208 Sum_probs=67.9
Q ss_pred CCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------CCcEEeccCCCCCCCCCceeEEEEcCceeeccCChHHHHH
Q 010086 117 SAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFAS 190 (518)
Q Consensus 117 ~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp~~~l~ 190 (518)
..++||||+|.|..+..++.. +.+|++.+.|.. ..-+..-+..+..=.+..||+|.|.++ |+...+|...++
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNv-LDRc~~P~~LL~ 172 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNV-LDRCDRPLTLLR 172 (265)
T ss_pred CCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhh-hhccCCHHHHHH
Confidence 468999999999999998764 578999998841 000111122222223568999999998 999999999999
Q ss_pred HHHhcccCCcEEEEEe
Q 010086 191 EIVRTLKPEGFAVVHV 206 (518)
Q Consensus 191 Ei~RVLKPGG~lvi~~ 206 (518)
+|++.|+|+|++++++
T Consensus 173 ~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 173 DIRRALKPNGRLILAV 188 (265)
T ss_pred HHHHHhCCCCEEEEEE
Confidence 9999999999988875
No 109
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.40 E-value=4.1e-06 Score=85.48 Aligned_cols=91 Identities=18% Similarity=0.134 Sum_probs=65.4
Q ss_pred CeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC--------------C--CcEEeccCCCCCCCCCceeEEEEcCce--
Q 010086 118 AKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS--------------K--PLVISGEGHRIPFDGNTFDFVFVGGAR-- 178 (518)
Q Consensus 118 ~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~--------------~--~l~~~~da~~LPf~D~SFD~V~s~~~~-- 178 (518)
.+|||+|||+|..+..++... ..+++|+|+++. . ..++++|..+ +++++.||+|+|+--+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence 689999999999998887643 358999999841 1 2345676644 5666689999996210
Q ss_pred ----------eeccC------------ChHHHHHHHHhcccCCcEEEEEecCC
Q 010086 179 ----------LEKAS------------KPLDFASEIVRTLKPEGFAVVHVRAK 209 (518)
Q Consensus 179 ----------l~~~~------------dp~~~l~Ei~RVLKPGG~lvi~~~~~ 209 (518)
++|-+ ...+.++++.+.|||||++++.++..
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 12211 23457899999999999999988654
No 110
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.38 E-value=1.2e-06 Score=94.45 Aligned_cols=93 Identities=13% Similarity=0.146 Sum_probs=67.5
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC--------------CCcE--EeccCCCCCC--CCCceeEEEE
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS--------------KPLV--ISGEGHRIPF--DGNTFDFVFV 174 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~--------------~~l~--~~~da~~LPf--~D~SFD~V~s 174 (518)
..+|.+|||+|||+|..+..+++. +.+.++|+|+++. ...+ ..+|+..+++ ++++||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 567899999999999988777663 3468999999842 1112 3466665555 6789999995
Q ss_pred ----cC-ceeeccCC----------------hHHHHHHHHhcccCCcEEEEEe
Q 010086 175 ----GG-ARLEKASK----------------PLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 175 ----~~-~~l~~~~d----------------p~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
++ +.+++.++ ..+.+.++.|+|||||.++..+
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 22 22555443 2468999999999999998874
No 111
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.37 E-value=1.2e-06 Score=91.66 Aligned_cols=91 Identities=20% Similarity=0.221 Sum_probs=64.8
Q ss_pred CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC---------C----------------CCcEEeccCCC------CCC
Q 010086 116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS---------S----------------KPLVISGEGHR------IPF 164 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~---------~----------------~~l~~~~da~~------LPf 164 (518)
++.+|||+|||-|..+..+...++..++|+|++. + ...++.+|... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 7889999999999998888888889999999972 1 01123454432 233
Q ss_pred CCCceeEEEEcCceeeccCChH----HHHHHHHhcccCCcEEEEEec
Q 010086 165 DGNTFDFVFVGGARLEKASKPL----DFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 165 ~D~SFD~V~s~~~~l~~~~dp~----~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
+...||+|.|.++ ||++-..+ .+++-+...|||||+++.++.
T Consensus 142 ~~~~FDvVScQFa-lHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFA-LHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES--GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHH-HHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 3459999999998 99875432 478999999999999999875
No 112
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.36 E-value=1.3e-06 Score=94.11 Aligned_cols=93 Identities=17% Similarity=0.303 Sum_probs=67.3
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcCC-CcEEEEecCCC--------------CCcEEeccCCCCC--CCCCceeEEEE--
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIGV-EDSIGIFKKSS--------------KPLVISGEGHRIP--FDGNTFDFVFV-- 174 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g~-~~v~gID~s~~--------------~~l~~~~da~~LP--f~D~SFD~V~s-- 174 (518)
+.++.+|||+|||+|..+..+.+.+. ..|+|+|+++. ...++.+|+.+++ +++++||.|++
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 56889999999999999887776532 58999999852 1234678888765 45789999994
Q ss_pred --cCc-eeec------cCCh----------HHHHHHHHhcccCCcEEEEEe
Q 010086 175 --GGA-RLEK------ASKP----------LDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 175 --~~~-~l~~------~~dp----------~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
+.. .+.+ ...+ .+.+.++.+.|||||.+++.+
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 221 1211 1122 257899999999999998765
No 113
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.36 E-value=7.8e-07 Score=91.14 Aligned_cols=95 Identities=20% Similarity=0.270 Sum_probs=74.1
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------------CCcEEecc------CCCCCCC
Q 010086 113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------------KPLVISGE------GHRIPFD 165 (518)
Q Consensus 113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------------~~l~~~~d------a~~LPf~ 165 (518)
+.++++.+|++|||-|..+..+...|...++|||+++- +..++.+| ...++++
T Consensus 114 y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 114 YTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred HhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 45788999999999999888887788889999999741 12344444 2345788
Q ss_pred CCceeEEEEcCceeeccC----ChHHHHHHHHhcccCCcEEEEEecC
Q 010086 166 GNTFDFVFVGGARLEKAS----KPLDFASEIVRTLKPEGFAVVHVRA 208 (518)
Q Consensus 166 D~SFD~V~s~~~~l~~~~----dp~~~l~Ei~RVLKPGG~lvi~~~~ 208 (518)
|-+||+|.|.++ ||..- ....+++-+.+.|||||+++-++..
T Consensus 194 dp~fDivScQF~-~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 194 DPRFDIVSCQFA-FHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred CCCcceeeeeee-EeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 888999999987 77653 2335789999999999999998753
No 114
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.4e-06 Score=83.44 Aligned_cols=97 Identities=19% Similarity=0.274 Sum_probs=73.0
Q ss_pred HHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCC-C
Q 010086 103 SVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFD-G 166 (518)
Q Consensus 103 ~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~-D 166 (518)
.+...+.+.--++++++||+||||+|..+..|++.. .+|+.|+..+. ...++++|+.. -++ .
T Consensus 59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~-G~~~~ 136 (209)
T COG2518 59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSK-GWPEE 136 (209)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCccc-CCCCC
Confidence 344444555568999999999999999999999875 59999998631 13345777654 343 4
Q ss_pred CceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086 167 NTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRA 208 (518)
Q Consensus 167 ~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~ 208 (518)
+-||.|+...+ ...++.+ +.+-|||||++++.++.
T Consensus 137 aPyD~I~Vtaa-a~~vP~~------Ll~QL~~gGrlv~PvG~ 171 (209)
T COG2518 137 APYDRIIVTAA-APEVPEA------LLDQLKPGGRLVIPVGS 171 (209)
T ss_pred CCcCEEEEeec-cCCCCHH------HHHhcccCCEEEEEEcc
Confidence 88999999886 7766433 46789999999999873
No 115
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.35 E-value=1.4e-06 Score=94.17 Aligned_cols=93 Identities=15% Similarity=0.213 Sum_probs=68.6
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC---------------CCcEEeccCCCCC----CCCCceeEE
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS---------------KPLVISGEGHRIP----FDGNTFDFV 172 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~---------------~~l~~~~da~~LP----f~D~SFD~V 172 (518)
+++|.+|||+|||+|..+..+++. + .+.++++|+++. ...++.+|+..++ +.+++||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 467899999999999998877764 2 358999999742 1234578888776 667899999
Q ss_pred EEc----C-ceeeccCC----------------hHHHHHHHHhcccCCcEEEEEe
Q 010086 173 FVG----G-ARLEKASK----------------PLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 173 ~s~----~-~~l~~~~d----------------p~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
++. + ..+++-++ ..+.+.++.+.|||||+++..+
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 952 1 12444333 3467899999999999987764
No 116
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.34 E-value=6.2e-06 Score=82.77 Aligned_cols=94 Identities=17% Similarity=0.254 Sum_probs=65.1
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCc
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGA 177 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~ 177 (518)
..++.+|||+|||+|..+..++... ...++|+|+++. ...++.+|... ++++++||+|+++--
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npP 184 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPP 184 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCC
Confidence 3567899999999999988887643 468999999741 11234566533 445789999998531
Q ss_pred ee-----e--------c------------cCChHHHHHHHHhcccCCcEEEEEecC
Q 010086 178 RL-----E--------K------------ASKPLDFASEIVRTLKPEGFAVVHVRA 208 (518)
Q Consensus 178 ~l-----~--------~------------~~dp~~~l~Ei~RVLKPGG~lvi~~~~ 208 (518)
+. + | +....++++++.++|||||++++..+.
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~ 240 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY 240 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence 01 0 0 011245678888999999999997753
No 117
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.31 E-value=3.2e-06 Score=87.44 Aligned_cols=107 Identities=12% Similarity=0.090 Sum_probs=72.3
Q ss_pred CeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCce--
Q 010086 118 AKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGAR-- 178 (518)
Q Consensus 118 ~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~~-- 178 (518)
.+|||+|||+|..+..++.. +..+++|+|+|+. ...++.+|..+ ++++++||+|+|+-=+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCC
Confidence 68999999999999888764 3468999999841 12245677543 3456789999996200
Q ss_pred ----------eeccC------------ChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEE
Q 010086 179 ----------LEKAS------------KPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKS 229 (518)
Q Consensus 179 ----------l~~~~------------dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~ 229 (518)
++|-+ ....+++++.+.|||||.+++.++... ..+..+|++...++.
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~----~~~~~~~~~~~~~~~ 282 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSR----VHLEEAYPDVPFTWL 282 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcCH----HHHHHHHhhCCCEEE
Confidence 11111 013568999999999999999876432 346666666554444
No 118
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.31 E-value=1.4e-06 Score=85.33 Aligned_cols=99 Identities=21% Similarity=0.315 Sum_probs=66.5
Q ss_pred HHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC---------------CCcEEeccCCCCCCC
Q 010086 103 SVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS---------------KPLVISGEGHRIPFD 165 (518)
Q Consensus 103 ~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~---------------~~l~~~~da~~LPf~ 165 (518)
.+...+++.-.+++|++|||||||+|..+..|+.+ | ...|++||..+. ...++.+|+..---+
T Consensus 59 ~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 59 SMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE 138 (209)
T ss_dssp HHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG
T ss_pred HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc
Confidence 33444444445899999999999999999888874 4 347999998641 123567787653334
Q ss_pred CCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086 166 GNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRA 208 (518)
Q Consensus 166 D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~ 208 (518)
.+.||.|++..+ ...+ | .++.+-||+||++++.+..
T Consensus 139 ~apfD~I~v~~a-~~~i--p----~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 139 EAPFDRIIVTAA-VPEI--P----EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp G-SEEEEEESSB-BSS--------HHHHHTEEEEEEEEEEESS
T ss_pred CCCcCEEEEeec-cchH--H----HHHHHhcCCCcEEEEEEcc
Confidence 578999999886 6543 3 3467889999999998864
No 119
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.30 E-value=2.7e-06 Score=83.89 Aligned_cols=118 Identities=18% Similarity=0.297 Sum_probs=79.7
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------------C---------CcEEeccCCCCCCC
Q 010086 113 YLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------------K---------PLVISGEGHRIPFD 165 (518)
Q Consensus 113 ll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------------~---------~l~~~~da~~LPf~ 165 (518)
..+++.+||+.|||.|..+..|++.| .+|+|+|+|+. . ..+.++|.-+++-.
T Consensus 34 ~~~~~~rvLvPgCG~g~D~~~La~~G-~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYDMLWLAEQG-HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TTSTSEEEEETTTTTSCHHHHHHHTT-EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCCeEEEeCCCChHHHHHHHHCC-CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 45678899999999999999999998 59999999841 0 01346787777654
Q ss_pred C-CceeEEEEcCceeeccC--ChHHHHHHHHhcccCCcEE-EEEecC------CCcc--CchhHhhhcc-CccEEEEecc
Q 010086 166 G-NTFDFVFVGGARLEKAS--KPLDFASEIVRTLKPEGFA-VVHVRA------KDEY--SFNSFLDLFN-SCKLVKSRDI 232 (518)
Q Consensus 166 D-~SFD~V~s~~~~l~~~~--dp~~~l~Ei~RVLKPGG~l-vi~~~~------~~~~--s~~~~~~lf~-~~~~v~~~~v 232 (518)
+ +.||+|+-..+ |+-++ .-.+.++-+.+.|||||.+ .+++.. ++++ +...+..+|. .|++..+...
T Consensus 113 ~~g~fD~iyDr~~-l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~~~f~i~~l~~~ 191 (218)
T PF05724_consen 113 DVGKFDLIYDRTF-LCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFGPGFEIEELEEE 191 (218)
T ss_dssp CHHSEEEEEECSS-TTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHTTTEEEEEEEEE
T ss_pred hcCCceEEEEecc-cccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhcCCcEEEEEecc
Confidence 4 48999998875 65543 1246789999999999994 333321 1222 3345677775 4566666543
No 120
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.29 E-value=2.2e-06 Score=84.52 Aligned_cols=97 Identities=23% Similarity=0.284 Sum_probs=73.1
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------C------CcEEeccCCCC--CCCCCceeEEEE
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------K------PLVISGEGHRI--PFDGNTFDFVFV 174 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------~------~l~~~~da~~L--Pf~D~SFD~V~s 174 (518)
.+.|.+|||.+.|-|..+....+.|...|+.++.++. + ..++.||+.+. .|+|+|||+|+-
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 4569999999999999987777778669999987642 1 12457888776 699999999985
Q ss_pred cCceeeccC--ChHHHHHHHHhcccCCcEEEEEecCCC
Q 010086 175 GGARLEKAS--KPLDFASEIVRTLKPEGFAVVHVRAKD 210 (518)
Q Consensus 175 ~~~~l~~~~--dp~~~l~Ei~RVLKPGG~lvi~~~~~~ 210 (518)
---.|.+.- .-+.+.+|++|||||||.++.-+++..
T Consensus 212 DPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg 249 (287)
T COG2521 212 DPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG 249 (287)
T ss_pred CCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence 331233322 245789999999999999998887554
No 121
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.29 E-value=2.2e-06 Score=80.57 Aligned_cols=94 Identities=13% Similarity=0.042 Sum_probs=67.4
Q ss_pred HHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------------CCcEEeccCCCCCCCCCceeEEEE
Q 010086 108 LISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------------KPLVISGEGHRIPFDGNTFDFVFV 174 (518)
Q Consensus 108 L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------------~~l~~~~da~~LPf~D~SFD~V~s 174 (518)
+++.--+.++.++||+|||+|..+..+.+.+ .+++++|+++. ...++.+|+.+++++++.||.|++
T Consensus 5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~ 83 (169)
T smart00650 5 IVRAANLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVG 83 (169)
T ss_pred HHHhcCCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEE
Confidence 3443345678899999999999998888775 79999999841 123568999999999989999999
Q ss_pred cCceeeccCChHHHHHHHHh--cccCCcEEEEEe
Q 010086 175 GGARLEKASKPLDFASEIVR--TLKPEGFAVVHV 206 (518)
Q Consensus 175 ~~~~l~~~~dp~~~l~Ei~R--VLKPGG~lvi~~ 206 (518)
+.- + |.. ...+..+.+ -+.++|+++++-
T Consensus 84 n~P-y-~~~--~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 84 NLP-Y-NIS--TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred CCC-c-ccH--HHHHHHHHhcCCCcceEEEEEEH
Confidence 763 3 322 223333332 245889998875
No 122
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.29 E-value=5.5e-06 Score=84.75 Aligned_cols=103 Identities=14% Similarity=0.153 Sum_probs=70.0
Q ss_pred CCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCc-
Q 010086 116 QSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGA- 177 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~- 177 (518)
++.+|||+|||+|..+..+++.. ..+++|+|+++. ...++.+|..+ ++++++||+|+++-=
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 45799999999999998887643 358999999841 11245677643 456778999999620
Q ss_pred ----eeecc-----CCh--------------HHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccC
Q 010086 178 ----RLEKA-----SKP--------------LDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNS 223 (518)
Q Consensus 178 ----~l~~~-----~dp--------------~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~ 223 (518)
.+.++ ..| ..+++++.++|||||++++.++... ..+..++.+
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~----~~v~~~~~~ 264 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM----EALEEAYPD 264 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH----HHHHHHHHh
Confidence 01111 012 3568999999999999999886422 355555554
No 123
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.28 E-value=6e-07 Score=88.15 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=78.9
Q ss_pred CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC----------CCCc---EEeccCCCCCCCCCceeEEEEcCceeecc
Q 010086 116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS----------SKPL---VISGEGHRIPFDGNTFDFVFVGGARLEKA 182 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~----------~~~l---~~~~da~~LPf~D~SFD~V~s~~~~l~~~ 182 (518)
....++|||||-|.....|...|+.+.+-+|.|- .|.. ...+|.+.|||.++|||+|+++.+ +||.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSls-lHW~ 150 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLS-LHWT 150 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhh-hhhh
Confidence 4567999999999999999888888999999872 1222 236899999999999999999997 9999
Q ss_pred CChHHHHHHHHhcccCCcEEEEEecCCC
Q 010086 183 SKPLDFASEIVRTLKPEGFAVVHVRAKD 210 (518)
Q Consensus 183 ~dp~~~l~Ei~RVLKPGG~lvi~~~~~~ 210 (518)
.+....+..++-.|||+|.++-..-..+
T Consensus 151 NdLPg~m~~ck~~lKPDg~Fiasmlggd 178 (325)
T KOG2940|consen 151 NDLPGSMIQCKLALKPDGLFIASMLGGD 178 (325)
T ss_pred ccCchHHHHHHHhcCCCccchhHHhccc
Confidence 9888889999999999999887644444
No 124
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.22 E-value=4.2e-06 Score=90.70 Aligned_cols=92 Identities=14% Similarity=0.159 Sum_probs=65.3
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEE--
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFV-- 174 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s-- 174 (518)
..+|.+|||+|||+|..+..+++. +...|+|+|+++. ...++.+|+..++ ++++||.|++
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~ 326 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDA 326 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcC
Confidence 457889999999999988766652 2358999999852 1124577887765 6789999995
Q ss_pred --cC-ceeecc------CC----------hHHHHHHHHhcccCCcEEEEEe
Q 010086 175 --GG-ARLEKA------SK----------PLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 175 --~~-~~l~~~------~d----------p~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
++ ..+..- .+ ..+.+.++.+.|||||+++..+
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 22 112211 11 2357999999999999998875
No 125
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.20 E-value=2.4e-05 Score=83.84 Aligned_cols=106 Identities=10% Similarity=0.054 Sum_probs=69.3
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC--------------CCcEEeccCCCCCCC-CCceeEEEEcCc
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS--------------KPLVISGEGHRIPFD-GNTFDFVFVGGA 177 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~--------------~~l~~~~da~~LPf~-D~SFD~V~s~~~ 177 (518)
++++.++||+|||+|..+..++.. +..+++|+|+|+. ...++++|..+..++ +++||+|+|+-=
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPP 328 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPP 328 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCC
Confidence 356679999999999998877653 3468999999841 122456776554343 468999999642
Q ss_pred eeec----c----------------CCh----HHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhcc
Q 010086 178 RLEK----A----------------SKP----LDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFN 222 (518)
Q Consensus 178 ~l~~----~----------------~dp----~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~ 222 (518)
++.. . .+. .+.++++.+.|||||.+++.++.... ..+.++++
T Consensus 329 YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~---e~V~~ll~ 394 (423)
T PRK14966 329 YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQG---AAVRGVLA 394 (423)
T ss_pred CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHH---HHHHHHHH
Confidence 1110 0 111 24567778899999999988765432 34444443
No 126
>PRK00811 spermidine synthase; Provisional
Probab=98.20 E-value=5.1e-06 Score=84.95 Aligned_cols=91 Identities=19% Similarity=0.303 Sum_probs=65.6
Q ss_pred CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC------------------CC--cEEeccCCC-CCCCCCceeEE
Q 010086 115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS------------------KP--LVISGEGHR-IPFDGNTFDFV 172 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~------------------~~--l~~~~da~~-LPf~D~SFD~V 172 (518)
+...+||+||||+|..+..+.+. +..+|++||+++. .+ .++.+|+.. ++..+++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45679999999999998776664 5678999999741 11 235677654 34457899999
Q ss_pred EEcCceeeccCC-----hHHHHHHHHhcccCCcEEEEEec
Q 010086 173 FVGGARLEKASK-----PLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 173 ~s~~~~l~~~~d-----p~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
++... +...- ...+++++.|.|||||++++..+
T Consensus 155 i~D~~--dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 155 IVDST--DPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EECCC--CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 99652 22211 14678999999999999998754
No 127
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.19 E-value=3.6e-06 Score=91.00 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=67.7
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCC---------------CCcEEeccCCCCC-CCCCceeEEEEc
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSS---------------KPLVISGEGHRIP-FDGNTFDFVFVG 175 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~---------------~~l~~~~da~~LP-f~D~SFD~V~s~ 175 (518)
+++|.+|||+|||+|..+..+++. +...|+++|+++. ...+..+|+..++ +.+++||.|++.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 568899999999999988777663 2368999999842 1124578888876 667899999952
Q ss_pred ----C-ceeeccC----------------ChHHHHHHHHhcccCCcEEEEEec
Q 010086 176 ----G-ARLEKAS----------------KPLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 176 ----~-~~l~~~~----------------dp~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
+ ..+.+-+ ...+.+.++.+.|||||+++..+-
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 2 1122211 123568899999999999888753
No 128
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.18 E-value=2.4e-06 Score=86.45 Aligned_cols=93 Identities=23% Similarity=0.209 Sum_probs=71.9
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC--------CCC-cEEeccCCCCCCCCCceeEEEEcCceeeccCC
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS--------SKP-LVISGEGHRIPFDGNTFDFVFVGGARLEKASK 184 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~--------~~~-l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~d 184 (518)
...+.-+||+|||.|..... .....++|.|++. ... .+..+|+.++|+++.+||++++..+ +||+..
T Consensus 43 ~~~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiav-ihhlsT 118 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAV-IHHLST 118 (293)
T ss_pred cCCcceeeecccCCcccCcC---CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhh-hhhhhh
Confidence 34588999999999886421 1113577788752 223 4678999999999999999999987 999864
Q ss_pred h---HHHHHHHHhcccCCcEEEEEecCCC
Q 010086 185 P---LDFASEIVRTLKPEGFAVVHVRAKD 210 (518)
Q Consensus 185 p---~~~l~Ei~RVLKPGG~lvi~~~~~~ 210 (518)
- .++++|+.|+|||||...+.++...
T Consensus 119 ~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 119 RERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 3 5789999999999999888776544
No 129
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.18 E-value=5.7e-07 Score=88.36 Aligned_cols=104 Identities=16% Similarity=0.225 Sum_probs=76.1
Q ss_pred HHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------CCc---EEeccCC-CCC-CCCCcee
Q 010086 103 SVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------KPL---VISGEGH-RIP-FDGNTFD 170 (518)
Q Consensus 103 ~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------~~l---~~~~da~-~LP-f~D~SFD 170 (518)
.+++.++...-..+-.++||+|||||.....|+..- .+.+|+|+|.. ... ..++++. -++ ..++.||
T Consensus 112 ~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a-~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~D 190 (287)
T COG4976 112 ELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMA-DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFD 190 (287)
T ss_pred HHHHHHHHhccCCccceeeecccCcCcccHhHHHHH-hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCccc
Confidence 344444443333345799999999999999888763 68999999852 011 1234443 223 4578999
Q ss_pred EEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086 171 FVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRA 208 (518)
Q Consensus 171 ~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~ 208 (518)
+|.+..+ |..+-+.+.++.-+.+.|+|||.+++.+..
T Consensus 191 Li~AaDV-l~YlG~Le~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 191 LIVAADV-LPYLGALEGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred chhhhhH-HHhhcchhhHHHHHHHhcCCCceEEEEecc
Confidence 9999998 888888888999999999999999998743
No 130
>PRK04457 spermidine synthase; Provisional
Probab=98.18 E-value=9.2e-06 Score=82.19 Aligned_cols=93 Identities=15% Similarity=0.218 Sum_probs=65.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC-----------C---C--cEEeccCCC-CCCCCCceeEEEEcC
Q 010086 115 SQSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS-----------K---P--LVISGEGHR-IPFDGNTFDFVFVGG 176 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~-----------~---~--l~~~~da~~-LPf~D~SFD~V~s~~ 176 (518)
++..+|||||||+|..+..+.+ .+..+++++|+++. + + .++.+|+.+ ++-..++||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 4567899999999999987765 34468999999741 1 1 235677643 222346899999854
Q ss_pred ceeeccCC-----hHHHHHHHHhcccCCcEEEEEecCC
Q 010086 177 ARLEKASK-----PLDFASEIVRTLKPEGFAVVHVRAK 209 (518)
Q Consensus 177 ~~l~~~~d-----p~~~l~Ei~RVLKPGG~lvi~~~~~ 209 (518)
++...- ...+++++.++|+|||++++.+...
T Consensus 145 --~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 145 --FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred --CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 432211 2588999999999999999975443
No 131
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.17 E-value=2.1e-05 Score=85.25 Aligned_cols=124 Identities=12% Similarity=0.137 Sum_probs=83.8
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCC----CCCCCCceeEEEE
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHR----IPFDGNTFDFVFV 174 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~----LPf~D~SFD~V~s 174 (518)
+.++.+|||+|||+|..+..+++.+ ..|+|+|+++. ...++.+|+.+ +|+++++||+|++
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~ 373 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL 373 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence 4678899999999999998888775 79999999841 12345677643 4577889999998
Q ss_pred cCceeeccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhh-ccCccEEEEeccCCCCCCccceeEEE
Q 010086 175 GGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDL-FNSCKLVKSRDIDGIDSSLPYIREIV 246 (518)
Q Consensus 175 ~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~l-f~~~~~v~~~~v~~~~~~~p~~~~vv 246 (518)
.-- .. .....++.+.+ ++|++++++....... ...+..| -..|++.++.-+|.|=.+ |++-.++
T Consensus 374 dPP---r~-g~~~~~~~l~~-~~~~~ivyvSCnp~tl--aRDl~~L~~~gY~l~~i~~~DmFP~T-~HvE~v~ 438 (443)
T PRK13168 374 DPP---RA-GAAEVMQALAK-LGPKRIVYVSCNPATL--ARDAGVLVEAGYRLKRAGMLDMFPHT-GHVESMA 438 (443)
T ss_pred CcC---Cc-ChHHHHHHHHh-cCCCeEEEEEeChHHh--hccHHHHhhCCcEEEEEEEeccCCCC-CcEEEEE
Confidence 531 11 12245555555 7999999998643221 1233333 256999999999986554 3444333
No 132
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.17 E-value=1.1e-05 Score=77.37 Aligned_cols=89 Identities=19% Similarity=0.234 Sum_probs=67.1
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC---------------CCcEEeccCCCC-CCCCCceeEEEEc
Q 010086 113 YLSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS---------------KPLVISGEGHRI-PFDGNTFDFVFVG 175 (518)
Q Consensus 113 ll~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~---------------~~l~~~~da~~L-Pf~D~SFD~V~s~ 175 (518)
-++++++++|||||||..+..++..+ ..+|++||.++. ...++.|++.+. + +-.+||.||..
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~-~~~~~daiFIG 109 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP-DLPSPDAIFIG 109 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc-CCCCCCEEEEC
Confidence 37899999999999999997776544 469999997531 112457777553 3 22289999998
Q ss_pred CceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086 176 GARLEKASKPLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
+. -+....++.+...|||||.+++...
T Consensus 110 Gg-----~~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 110 GG-----GNIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred CC-----CCHHHHHHHHHHHcCcCCeEEEEee
Confidence 85 2356788999999999999999754
No 133
>PHA03411 putative methyltransferase; Provisional
Probab=98.17 E-value=7.9e-06 Score=83.09 Aligned_cols=94 Identities=14% Similarity=0.105 Sum_probs=67.6
Q ss_pred CCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC----------CCcEEeccCCCCCCCCCceeEEEEcCceeeccCC
Q 010086 116 QSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS----------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKASK 184 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~----------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~d 184 (518)
...+|||+|||+|..+..+.+. +..+++|+|+++. ...++.+|..+++ .+.+||+|+++-- +.|...
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPP-F~~l~~ 141 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPP-FGKINT 141 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCC-ccccCc
Confidence 4579999999999987666543 2368999999852 1235678887765 3578999999775 555321
Q ss_pred --------------------hHHHHHHHHhcccCCcEEEEEecCCCc
Q 010086 185 --------------------PLDFASEIVRTLKPEGFAVVHVRAKDE 211 (518)
Q Consensus 185 --------------------p~~~l~Ei~RVLKPGG~lvi~~~~~~~ 211 (518)
..++++...++|||+|.+.+..+..+.
T Consensus 142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~ 188 (279)
T PHA03411 142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPY 188 (279)
T ss_pred hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccc
Confidence 135667889999999988777655443
No 134
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.15 E-value=4.3e-06 Score=81.04 Aligned_cols=85 Identities=19% Similarity=0.272 Sum_probs=62.0
Q ss_pred CeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------CCcEEeccCCC-CC--CCCCceeEEEEcCce
Q 010086 118 AKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------KPLVISGEGHR-IP--FDGNTFDFVFVGGAR 178 (518)
Q Consensus 118 ~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------~~l~~~~da~~-LP--f~D~SFD~V~s~~~~ 178 (518)
.-+||||||.|..+..+++. .-..++|||+... ...++++|+.. |+ ++++++|.|+..+
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F-- 96 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF-- 96 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC--
Confidence 37899999999999888764 4479999998631 12356788887 33 6789999999865
Q ss_pred eeccCCh-------------HHHHHHHHhcccCCcEEEEEecC
Q 010086 179 LEKASKP-------------LDFASEIVRTLKPEGFAVVHVRA 208 (518)
Q Consensus 179 l~~~~dp-------------~~~l~Ei~RVLKPGG~lvi~~~~ 208 (518)
+|| ..++.+++|+|||||.+.+.+..
T Consensus 97 ----PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 97 ----PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp ---------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred ----CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 333 25899999999999999998854
No 135
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.14 E-value=4.9e-06 Score=89.58 Aligned_cols=92 Identities=25% Similarity=0.306 Sum_probs=75.5
Q ss_pred CCCCCC-eEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------C--CcEEeccCCCCCCCCCceeEEEEcCc
Q 010086 113 YLSQSA-KSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------K--PLVISGEGHRIPFDGNTFDFVFVGGA 177 (518)
Q Consensus 113 ll~~~~-rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------~--~l~~~~da~~LPf~D~SFD~V~s~~~ 177 (518)
++++.. ++|-+|||...+.+.+.+.|+.+++.+|.|+- . ..+...|...+.|+|+|||.|+..+.
T Consensus 44 ~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGt 123 (482)
T KOG2352|consen 44 YLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGT 123 (482)
T ss_pred hhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCc
Confidence 456777 99999999999999999999999999999841 1 12457899999999999999999997
Q ss_pred eeeccCCh----------HHHHHHHHhcccCCcEEEEE
Q 010086 178 RLEKASKP----------LDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 178 ~l~~~~dp----------~~~l~Ei~RVLKPGG~lvi~ 205 (518)
++++.-+ ...+.|++|||+|||+++..
T Consensus 124 -lDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 124 -LDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred -cccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 8887422 13578999999999996543
No 136
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.12 E-value=6.3e-06 Score=83.31 Aligned_cols=93 Identities=15% Similarity=0.173 Sum_probs=66.1
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEc-
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVG- 175 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~- 175 (518)
++++.+|||+|||+|..+..+++. + .+.|+++|+++. ...++.+|+..++...++||.|++.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 468899999999999998777653 2 258999999842 1124567877777667789999952
Q ss_pred ---C-ceeeccCC----------------hHHHHHHHHhcccCCcEEEEEe
Q 010086 176 ---G-ARLEKASK----------------PLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 176 ---~-~~l~~~~d----------------p~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
+ .++.+-++ ..+.++++.+.|||||+++..+
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 1 11222111 1347899999999999988764
No 137
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.11 E-value=9.3e-06 Score=87.96 Aligned_cols=92 Identities=13% Similarity=0.200 Sum_probs=65.0
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCC---------------CCcEEeccCCCCC--CCCCceeEEEE
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSS---------------KPLVISGEGHRIP--FDGNTFDFVFV 174 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~---------------~~l~~~~da~~LP--f~D~SFD~V~s 174 (518)
++++.+|||+|||+|..+..+++. +...++++|+++. ...++.+|+.+++ ++ ++||.|++
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~ 326 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILV 326 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence 467889999999999998777663 2468999999742 1234578887763 44 78999996
Q ss_pred cC-----ceeeccC------C----------hHHHHHHHHhcccCCcEEEEEe
Q 010086 175 GG-----ARLEKAS------K----------PLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 175 ~~-----~~l~~~~------d----------p~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
.. ..+.+-+ . ....+.++.|+|||||.++..+
T Consensus 327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 42 1122211 1 1247899999999999998653
No 138
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.00 E-value=3.2e-05 Score=75.81 Aligned_cols=86 Identities=19% Similarity=0.225 Sum_probs=71.3
Q ss_pred CeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCCCcEEeccCCCCCCC---CCceeEEEEcCceeeccCChH---HHHHH
Q 010086 118 AKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSKPLVISGEGHRIPFD---GNTFDFVFVGGARLEKASKPL---DFASE 191 (518)
Q Consensus 118 ~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~~l~~~~da~~LPf~---D~SFD~V~s~~~~l~~~~dp~---~~l~E 191 (518)
-++|||||=+.... ....+.-+|+.||+.+..+.+.+.|..+.|.| ++.||+|.++.+ |..+++|. ++++-
T Consensus 53 lrlLEVGals~~N~--~s~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SLV-LNfVP~p~~RG~Ml~r 129 (219)
T PF11968_consen 53 LRLLEVGALSTDNA--CSTSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSLV-LNFVPDPKQRGEMLRR 129 (219)
T ss_pred ceEEeecccCCCCc--ccccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEEE-EeeCCCHHHHHHHHHH
Confidence 59999998754433 22345568999999988888999999998885 889999999998 99999986 58899
Q ss_pred HHhcccCCcE-----EEEEe
Q 010086 192 IVRTLKPEGF-----AVVHV 206 (518)
Q Consensus 192 i~RVLKPGG~-----lvi~~ 206 (518)
+++.|||+|. +++.+
T Consensus 130 ~~~fL~~~g~~~~~~LFlVl 149 (219)
T PF11968_consen 130 AHKFLKPPGLSLFPSLFLVL 149 (219)
T ss_pred HHHHhCCCCccCcceEEEEe
Confidence 9999999999 77765
No 139
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=6.4e-05 Score=77.12 Aligned_cols=111 Identities=16% Similarity=0.223 Sum_probs=74.8
Q ss_pred CCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC-------------CC--cEEeccCCCCCCCCCceeEEEEcCce
Q 010086 115 SQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS-------------KP--LVISGEGHRIPFDGNTFDFVFVGGAR 178 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~-------------~~--l~~~~da~~LPf~D~SFD~V~s~~~~ 178 (518)
..+.+|||+|||.|.+...+++.. ...++-+|++.. .. .+..+|. -.+-.+ +||+|+|+-=
T Consensus 157 ~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~-~~~v~~-kfd~IisNPP- 233 (300)
T COG2813 157 DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNL-YEPVEG-KFDLIISNPP- 233 (300)
T ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecc-cccccc-cccEEEeCCC-
Confidence 445699999999999998887754 568999998721 11 2333333 335555 9999999874
Q ss_pred eeccCC-----hHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEE
Q 010086 179 LEKASK-----PLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKS 229 (518)
Q Consensus 179 l~~~~d-----p~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~ 229 (518)
||.=.+ -++++.+..+.|++||.+.|.......|. .-+.++|.+++++.-
T Consensus 234 fh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~-~~L~~~Fg~v~~la~ 288 (300)
T COG2813 234 FHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYE-KKLKELFGNVEVLAK 288 (300)
T ss_pred ccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChH-HHHHHhcCCEEEEEe
Confidence 553221 13688999999999999888765333332 234556777666553
No 140
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.97 E-value=8.4e-05 Score=77.02 Aligned_cols=115 Identities=10% Similarity=0.052 Sum_probs=77.9
Q ss_pred CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCC-CCCceeEEEEcCcee
Q 010086 116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPF-DGNTFDFVFVGGARL 179 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf-~D~SFD~V~s~~~~l 179 (518)
++.+|||+|||+|..+..+++.+ .+|+|+|+++. ...++++|+.+++. .++.||+|++.--
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP-- 249 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP-- 249 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC--
Confidence 46899999999999999998876 79999999741 12356788876543 3568999998631
Q ss_pred eccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEEeccCCCCCC
Q 010086 180 EKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSS 238 (518)
Q Consensus 180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~v~~~~~~ 238 (518)
.. .-...+.++..-++|++++++...... -...+..+ ..|++.++.-+|.|=.+
T Consensus 250 r~--G~~~~~~~~l~~~~~~~ivyvsc~p~t--~~rd~~~l-~~y~~~~~~~~DmFP~T 303 (315)
T PRK03522 250 RR--GIGKELCDYLSQMAPRFILYSSCNAQT--MAKDLAHL-PGYRIERVQLFDMFPHT 303 (315)
T ss_pred CC--CccHHHHHHHHHcCCCeEEEEECCccc--chhHHhhc-cCcEEEEEEEeccCCCC
Confidence 00 001223344445788888887764322 22344444 78999999999886554
No 141
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.97 E-value=6.9e-05 Score=75.22 Aligned_cols=134 Identities=13% Similarity=0.124 Sum_probs=82.5
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC----------------CCcEEeccCCCCC--CCCCceeEEEE
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS----------------KPLVISGEGHRIP--FDGNTFDFVFV 174 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~----------------~~l~~~~da~~LP--f~D~SFD~V~s 174 (518)
.....+|||+|||+|.....+++. ....++||++.+. ...++++|..+.. +.-++||+|+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 345789999999999999888875 4479999998731 2335677877663 44558999999
Q ss_pred cCceeecc----C-------------ChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCc--cEEEEeccCCC
Q 010086 175 GGARLEKA----S-------------KPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSC--KLVKSRDIDGI 235 (518)
Q Consensus 175 ~~~~l~~~----~-------------dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~--~~v~~~~v~~~ 235 (518)
+-=++.-- + +.+..++-..+.|||||.+++...... +..+..+.++| ..-++.-|-+.
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~er---l~ei~~~l~~~~~~~k~i~~V~p~ 198 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPER---LAEIIELLKSYNLEPKRIQFVYPK 198 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHH---HHHHHHHHHhcCCCceEEEEecCC
Confidence 75212111 1 234567778889999999988764322 23444444443 22222222222
Q ss_pred CCCccceeEEEEeec
Q 010086 236 DSSLPYIREIVLKKE 250 (518)
Q Consensus 236 ~~~~p~~~~vv~kK~ 250 (518)
-..-|+.-.+..+|.
T Consensus 199 ~~k~A~~vLv~~~k~ 213 (248)
T COG4123 199 IGKAANRVLVEAIKG 213 (248)
T ss_pred CCCcceEEEEEEecC
Confidence 222234445666665
No 142
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.96 E-value=9.4e-06 Score=80.47 Aligned_cols=105 Identities=17% Similarity=0.121 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHh-cCC--CcEEEEecCCCC-----------Cc-----EE--ecc
Q 010086 100 FYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKE-IGV--EDSIGIFKKSSK-----------PL-----VI--SGE 158 (518)
Q Consensus 100 ~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~-~g~--~~v~gID~s~~~-----------~l-----~~--~~d 158 (518)
++..-|.+|....--.+ .+||+||||.|+.+.-+-+ ..- -.+++.|.|+.. +. +. ..+
T Consensus 56 wL~~Efpel~~~~~~~~-~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~ 134 (264)
T KOG2361|consen 56 WLLREFPELLPVDEKSA-ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSP 134 (264)
T ss_pred HHHHhhHHhhCccccCh-hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccch
Confidence 34444555543322122 2899999999998854443 221 478999988521 11 11 122
Q ss_pred CCCCCCCCCceeEEEEcCceeeccC--ChHHHHHHHHhcccCCcEEEEEe
Q 010086 159 GHRIPFDGNTFDFVFVGGARLEKAS--KPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 159 a~~LPf~D~SFD~V~s~~~~l~~~~--dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
...-|...+++|+|++.++ |.-+. .-..++..+.|+|||||.+++-.
T Consensus 135 ~~~~~~~~~svD~it~IFv-LSAi~pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 135 SLKEPPEEGSVDIITLIFV-LSAIHPEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred hccCCCCcCccceEEEEEE-EeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence 2234788999999999887 66553 12468999999999999999974
No 143
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=6.4e-05 Score=75.29 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=71.3
Q ss_pred HHcCCCCCCCeEEEEcCCCCHhHHHHHh-cC-CCcEEEEecCCC----------------CCcEEeccCCCCCCCCCcee
Q 010086 109 ISEGYLSQSAKSLCVETQYGQDVFALKE-IG-VEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFD 170 (518)
Q Consensus 109 ~~~gll~~~~rvLDVGcGtG~~~~~L~~-~g-~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD 170 (518)
+....+.+|++|||.|+|+|.++..|+. .| .++|+..|+.+. ......+|..+--+++ .||
T Consensus 87 ~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vD 165 (256)
T COG2519 87 VARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVD 165 (256)
T ss_pred HHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccC
Confidence 3445689999999999999999988885 34 479999997531 1123457877766666 899
Q ss_pred EEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086 171 FVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 171 ~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
+|+-- +++|+.++.-+...|||||.+++-+
T Consensus 166 av~LD------mp~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 166 AVFLD------LPDPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred EEEEc------CCChHHHHHHHHHHhCCCcEEEEEc
Confidence 99863 4789999999999999999988754
No 144
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.89 E-value=4.7e-05 Score=75.76 Aligned_cols=87 Identities=16% Similarity=0.202 Sum_probs=61.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHh-c-CCCcEEEEecCCC----------------CCcEEeccCCCC-C-----CCCCcee
Q 010086 115 SQSAKSLCVETQYGQDVFALKE-I-GVEDSIGIFKKSS----------------KPLVISGEGHRI-P-----FDGNTFD 170 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~-~-g~~~v~gID~s~~----------------~~l~~~~da~~L-P-----f~D~SFD 170 (518)
.+..+|||||||+|..+..++. . +.++++++|+++. ...++.+|+.+. + .++++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 4577999999999998766664 2 2469999998741 122456776542 2 1257999
Q ss_pred EEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 171 FVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 171 ~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
+||.... . +.....+.++.|.|||||++++.
T Consensus 147 ~VfiDa~---k-~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 147 FAFVDAD---K-PNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred EEEECCC---H-HHHHHHHHHHHHhcCCCeEEEEE
Confidence 9998642 1 22346789999999999998874
No 145
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.88 E-value=0.00013 Score=76.14 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=77.0
Q ss_pred HHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC------------CC---CcEEe-ccCCCCCCCC
Q 010086 103 SVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS------------SK---PLVIS-GEGHRIPFDG 166 (518)
Q Consensus 103 ~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~------------~~---~l~~~-~da~~LPf~D 166 (518)
.+-+-+++..-+++|..+||==||||..+....-.| .+++|.|+.. +. -.+.. .|+.++||++
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G-~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~ 262 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMG-ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRD 262 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcC-ceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCC
Confidence 444445566668999999999999999987777677 7999999862 11 11234 4999999999
Q ss_pred CceeEEEEcCceeec----cCC----hHHHHHHHHhcccCCcEEEEEec
Q 010086 167 NTFDFVFVGGARLEK----ASK----PLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 167 ~SFD~V~s~~~~l~~----~~d----p~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
++||.|.+---+-.. ... -.++++++++|||+||++++...
T Consensus 263 ~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 263 NSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 999999975410111 111 24688999999999999999875
No 146
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.86 E-value=0.00013 Score=73.35 Aligned_cols=93 Identities=13% Similarity=0.025 Sum_probs=62.2
Q ss_pred CCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC------------CCcEEeccCCC-CCC-CCCceeEEEEcCcee--
Q 010086 117 SAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS------------KPLVISGEGHR-IPF-DGNTFDFVFVGGARL-- 179 (518)
Q Consensus 117 ~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~------------~~l~~~~da~~-LPf-~D~SFD~V~s~~~~l-- 179 (518)
..++||+|||+|..+..+.+. +..+++|+|+++. ...++++|..+ ++- ..+.||+|+++-=++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 458999999999999877653 3358999999842 12355677654 221 135799999874111
Q ss_pred ---ecc----------------CC----hHHHHHHHHhcccCCcEEEEEecCC
Q 010086 180 ---EKA----------------SK----PLDFASEIVRTLKPEGFAVVHVRAK 209 (518)
Q Consensus 180 ---~~~----------------~d----p~~~l~Ei~RVLKPGG~lvi~~~~~ 209 (518)
... .+ ..+++..+.+.|||||++++..+..
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~ 219 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER 219 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence 110 01 1256677789999999999887644
No 147
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.85 E-value=6.2e-05 Score=81.19 Aligned_cols=115 Identities=15% Similarity=0.181 Sum_probs=75.8
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCC----CCCCCCceeEEEE
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHR----IPFDGNTFDFVFV 174 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~----LPf~D~SFD~V~s 174 (518)
+.++.+|||+|||+|..+..+++.+ ..|+|+|+++. ...++.+|+.+ +++.+++||+|+.
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~ 368 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLL 368 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEE
Confidence 4667899999999999998888764 68999999742 12356777654 3456778999997
Q ss_pred cCceeeccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhcc-CccEEEEeccCCC
Q 010086 175 GGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFN-SCKLVKSRDIDGI 235 (518)
Q Consensus 175 ~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~-~~~~v~~~~v~~~ 235 (518)
.-- ..--...+++++.+ |+|++++++..... +. ...+..|.+ .|++..+.-+|.|
T Consensus 369 dPP---r~G~~~~~l~~l~~-l~~~~ivyvsc~p~-tl-ard~~~l~~~gy~~~~~~~~DmF 424 (431)
T TIGR00479 369 DPP---RKGCAAEVLRTIIE-LKPERIVYVSCNPA-TL-ARDLEFLCKEGYGITWVQPVDMF 424 (431)
T ss_pred CcC---CCCCCHHHHHHHHh-cCCCEEEEEcCCHH-HH-HHHHHHHHHCCeeEEEEEEeccC
Confidence 542 11102355666655 89999888764321 11 122333333 4888888887764
No 148
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.84 E-value=7.9e-05 Score=75.58 Aligned_cols=92 Identities=16% Similarity=0.210 Sum_probs=60.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC---------C--------C--cEEeccCCC-CCCCCCceeEEE
Q 010086 115 SQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS---------K--------P--LVISGEGHR-IPFDGNTFDFVF 173 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~---------~--------~--l~~~~da~~-LPf~D~SFD~V~ 173 (518)
+...+||+||||+|..+..+.+.+ ..+++++|+++. + + .++.+|+.+ +.-.+++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 345699999999999887665543 568999998741 0 0 122344322 122257999999
Q ss_pred EcCceeeccCC----hHHHHHHHHhcccCCcEEEEEec
Q 010086 174 VGGARLEKASK----PLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 174 s~~~~l~~~~d----p~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
+... ....+. ...+++.+.+.|||||++++...
T Consensus 151 ~D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 151 VDST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EeCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 8653 111111 24678999999999999998743
No 149
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.83 E-value=0.00014 Score=70.92 Aligned_cols=114 Identities=11% Similarity=0.057 Sum_probs=69.0
Q ss_pred CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCC-CCCCCCceeEEEEcCce
Q 010086 115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHR-IPFDGNTFDFVFVGGAR 178 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~-LPf~D~SFD~V~s~~~~ 178 (518)
.++.++||+|||+|.++..+...+..+|+++|.++. ...++.+|+.+ ++-.+++||+|++.-=
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP- 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP- 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC-
Confidence 356799999999999986543345579999998741 12245666654 3333567999999752
Q ss_pred eeccCChHHHHHHHHh--cccCCcEEEEEecCCCccCchhHhhhccCccEEEEeccCCCCCC
Q 010086 179 LEKASKPLDFASEIVR--TLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSS 238 (518)
Q Consensus 179 l~~~~dp~~~l~Ei~R--VLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~v~~~~~~ 238 (518)
+.. .-...+++-+.. .|+|+|++++...+... +..+..++++.+.++ |+-+
T Consensus 131 y~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~-----~~~~~~~~~~~~~k~---yG~s 183 (199)
T PRK10909 131 FRK-GLLEETINLLEDNGWLADEALIYVESEVENG-----LPTVPANWQLHREKV---AGQV 183 (199)
T ss_pred CCC-ChHHHHHHHHHHCCCcCCCcEEEEEecCCCC-----cccCCCccEEEEEec---CCCE
Confidence 221 112233343333 47899999988654322 212234566666666 6644
No 150
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.83 E-value=5e-05 Score=75.43 Aligned_cols=85 Identities=15% Similarity=0.258 Sum_probs=65.0
Q ss_pred CeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------------CCcEEeccCCCC---CCCCCceeEEEEcCce
Q 010086 118 AKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------------KPLVISGEGHRI---PFDGNTFDFVFVGGAR 178 (518)
Q Consensus 118 ~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------------~~l~~~~da~~L---Pf~D~SFD~V~s~~~~ 178 (518)
..+|+||||.|..+..+++. .-.+.+||++... ...++++|+..+ -++++|.|-|+..+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F-- 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF-- 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC--
Confidence 47999999999999888764 3468999998631 112457777665 25677999999865
Q ss_pred eeccCCh-------------HHHHHHHHhcccCCcEEEEEecC
Q 010086 179 LEKASKP-------------LDFASEIVRTLKPEGFAVVHVRA 208 (518)
Q Consensus 179 l~~~~dp-------------~~~l~Ei~RVLKPGG~lvi~~~~ 208 (518)
+|| ..+++++.|+|||||.+.+.+..
T Consensus 128 ----PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 128 ----PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred ----CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 333 25899999999999999998854
No 151
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.82 E-value=0.0001 Score=62.11 Aligned_cols=87 Identities=22% Similarity=0.313 Sum_probs=61.3
Q ss_pred EEEEcCCCCHhHHHHHhcCC--CcEEEEecCCC-----------C----CcEEeccCCC--CCCCC-CceeEEEEcCcee
Q 010086 120 SLCVETQYGQDVFALKEIGV--EDSIGIFKKSS-----------K----PLVISGEGHR--IPFDG-NTFDFVFVGGARL 179 (518)
Q Consensus 120 vLDVGcGtG~~~~~L~~~g~--~~v~gID~s~~-----------~----~l~~~~da~~--LPf~D-~SFD~V~s~~~~l 179 (518)
++|+|||+|... .+..... ..++|+|.++. . .....++... +||.+ ..||++ +....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999965 2332221 37899998731 1 1244566665 89988 599999 544324
Q ss_pred eccCChHHHHHHHHhcccCCcEEEEEecCC
Q 010086 180 EKASKPLDFASEIVRTLKPEGFAVVHVRAK 209 (518)
Q Consensus 180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~ 209 (518)
++.. +...+.++.|+|||+|.+++.....
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 4443 7889999999999999998876543
No 152
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.82 E-value=0.00022 Score=70.62 Aligned_cols=94 Identities=16% Similarity=0.070 Sum_probs=68.2
Q ss_pred HHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCC--------CCCcEEeccCCCCCCCCCceeEEEEcCce
Q 010086 108 LISEGYLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKS--------SKPLVISGEGHRIPFDGNTFDFVFVGGAR 178 (518)
Q Consensus 108 L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~--------~~~l~~~~da~~LPf~D~SFD~V~s~~~~ 178 (518)
+.....+++..++||||+|+|..+.++.+. +-.+++..|+-. ....++.+|.. -|+|. +|+++..+.
T Consensus 92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~v- 167 (241)
T PF00891_consen 92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHV- 167 (241)
T ss_dssp HHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESS-
T ss_pred hhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHH-hhhcc--ccceeeehh-
Confidence 334445666789999999999999877663 345888999621 11234567776 57777 999999998
Q ss_pred eeccCChH--HHHHHHHhcccCC--cEEEEE
Q 010086 179 LEKASKPL--DFASEIVRTLKPE--GFAVVH 205 (518)
Q Consensus 179 l~~~~dp~--~~l~Ei~RVLKPG--G~lvi~ 205 (518)
||++++.. +.++.+++.|+|| |+++|.
T Consensus 168 Lh~~~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 168 LHDWSDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp GGGS-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred hhhcchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 99987654 5789999999999 998775
No 153
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.81 E-value=9e-05 Score=73.68 Aligned_cols=82 Identities=17% Similarity=0.077 Sum_probs=58.2
Q ss_pred CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------CCcE---EeccCCCC-----CCCCCceeEEEEcCce
Q 010086 115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------KPLV---ISGEGHRI-----PFDGNTFDFVFVGGAR 178 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------~~l~---~~~da~~L-----Pf~D~SFD~V~s~~~~ 178 (518)
.++.++||+|||||.++..+.+.|...|+|+|+++. .+.+ ...+.+.+ +..-..+|++|++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~- 152 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI- 152 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH-
Confidence 467799999999999999998888789999999751 1111 12233332 222247888777643
Q ss_pred eeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086 179 LEKASKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 179 l~~~~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
..+.-+.+.|+| |.+++.+
T Consensus 153 --------~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 153 --------SILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred --------hHHHHHHHHhCc-CeEEEEc
Confidence 247789999999 8887776
No 154
>PRK01581 speE spermidine synthase; Validated
Probab=97.81 E-value=8.9e-05 Score=78.26 Aligned_cols=91 Identities=12% Similarity=0.090 Sum_probs=63.7
Q ss_pred CCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC--------C------------C--cEEeccCCC-CCCCCCcee
Q 010086 115 SQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS--------K------------P--LVISGEGHR-IPFDGNTFD 170 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~--------~------------~--l~~~~da~~-LPf~D~SFD 170 (518)
....+||+||||+|..+..+.+. +..+++.||+++. + + .++.+|+.+ ++-.++.||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 44569999999999987666554 3579999998741 1 1 123566655 344567899
Q ss_pred EEEEcCceeeccCC------hHHHHHHHHhcccCCcEEEEEec
Q 010086 171 FVFVGGARLEKASK------PLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 171 ~V~s~~~~l~~~~d------p~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
+|++.. .+.... -..+++.+.|.|||||+++++..
T Consensus 229 VIIvDl--~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 229 VIIIDF--PDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred EEEEcC--CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 999864 221111 14588999999999999988753
No 155
>PRK03612 spermidine synthase; Provisional
Probab=97.79 E-value=4.9e-05 Score=84.14 Aligned_cols=92 Identities=17% Similarity=0.260 Sum_probs=65.4
Q ss_pred CCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC--------------------CC--cEEeccCCC-CCCCCCcee
Q 010086 115 SQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS--------------------KP--LVISGEGHR-IPFDGNTFD 170 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~--------------------~~--l~~~~da~~-LPf~D~SFD 170 (518)
++..+|||||||+|..+..+.+.+ ..+++++|+++. .+ .++.+|+.+ +.-.+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 456799999999999987776654 379999998631 01 234667665 333457999
Q ss_pred EEEEcCceeeccCC-----hHHHHHHHHhcccCCcEEEEEec
Q 010086 171 FVFVGGARLEKASK-----PLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 171 ~V~s~~~~l~~~~d-----p~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
+|++... ..+.+. ..++++++.|.|||||+++++..
T Consensus 376 vIi~D~~-~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 376 VIIVDLP-DPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred EEEEeCC-CCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 9999753 222111 13578999999999999999764
No 156
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.77 E-value=2.8e-05 Score=73.60 Aligned_cols=117 Identities=20% Similarity=0.169 Sum_probs=65.4
Q ss_pred CCCCCC--CeEEEEcCCCCHhHHHHHhcC--CCcEEEEecCCCCC--c--EEeccCC------CCC--CC--CCceeEEE
Q 010086 112 GYLSQS--AKSLCVETQYGQDVFALKEIG--VEDSIGIFKKSSKP--L--VISGEGH------RIP--FD--GNTFDFVF 173 (518)
Q Consensus 112 gll~~~--~rvLDVGcGtG~~~~~L~~~g--~~~v~gID~s~~~~--l--~~~~da~------~LP--f~--D~SFD~V~ 173 (518)
++++++ .++||+||++|..++.+.+.+ ...|+|+|+.+..+ . .+++|.. .+. ++ .+.||+|+
T Consensus 17 ~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 17 KIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp SSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred CCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccccCcceec
Confidence 345554 899999999999998888766 57999999976411 1 1223221 111 11 27999999
Q ss_pred EcCceeecc----CChH-------HHHHHHHhcccCCcEEEEEecCCCccCchhHhhh-ccCccEEEEec
Q 010086 174 VGGARLEKA----SKPL-------DFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDL-FNSCKLVKSRD 231 (518)
Q Consensus 174 s~~~~l~~~----~dp~-------~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~l-f~~~~~v~~~~ 231 (518)
|-.+ ..-. .+.. ..+.-+...|||||.+++-+-..... +.+... -+.|+.|++.+
T Consensus 97 ~D~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~--~~~~~~l~~~F~~v~~~K 163 (181)
T PF01728_consen 97 SDMA-PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI--EELIYLLKRCFSKVKIVK 163 (181)
T ss_dssp E--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS--HHHHHHHHHHHHHEEEEE
T ss_pred cccc-cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH--HHHHHHHHhCCeEEEEEE
Confidence 9763 2111 1111 23445567899999988876443322 233322 23444455544
No 157
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.73 E-value=7.6e-05 Score=72.56 Aligned_cols=90 Identities=16% Similarity=0.143 Sum_probs=54.3
Q ss_pred CCCeEEEEcCCCCHhHHHH----Hh-----cC-CCcEEEEecCCC------------------C----------------
Q 010086 116 QSAKSLCVETQYGQDVFAL----KE-----IG-VEDSIGIFKKSS------------------K---------------- 151 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L----~~-----~g-~~~v~gID~s~~------------------~---------------- 151 (518)
+.-||++.||+||..+..| .+ .+ ..+++|.|+++. +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4469999999999876433 33 11 138999999730 0
Q ss_pred ---------CcEEeccCCCCCCCCCceeEEEEcCceeeccCCh--HHHHHHHHhcccCCcEEEEEe
Q 010086 152 ---------PLVISGEGHRIPFDGNTFDFVFVGGARLEKASKP--LDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 152 ---------~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
..+.+.|..+.+-+.+.||+|+|.++ |-++..+ .++++-+++.|+|||++++.-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNV-lIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNV-LIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SS-GGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCE-EEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 00124455444456789999999998 7777654 468999999999999999954
No 158
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.72 E-value=5.3e-05 Score=86.71 Aligned_cols=93 Identities=12% Similarity=0.162 Sum_probs=64.7
Q ss_pred CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------------CCcEEeccCCCC-CCCCCceeEEEEcC
Q 010086 115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------------KPLVISGEGHRI-PFDGNTFDFVFVGG 176 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------------~~l~~~~da~~L-Pf~D~SFD~V~s~~ 176 (518)
.++.+|||+|||+|.++..++..|..+|+++|+|+. ...++++|+.+. .-..++||+|++.-
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 357899999999999998888777667999999841 123456775432 11157899999853
Q ss_pred ceeec----------cCChHHHHHHHHhcccCCcEEEEEec
Q 010086 177 ARLEK----------ASKPLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 177 ~~l~~----------~~dp~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
=+|.. ..+-...+..+.+.|||||++++...
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 11211 11223567888999999999988654
No 159
>PLN02366 spermidine synthase
Probab=97.71 E-value=0.00012 Score=76.03 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=63.8
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC---------C----------CcEEeccCCCC--CCCCCceeE
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS---------K----------PLVISGEGHRI--PFDGNTFDF 171 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~---------~----------~l~~~~da~~L--Pf~D~SFD~ 171 (518)
.+...+||+||||.|..+..+.+. +..+++.+|+++. + ..++.+|+... ..+++.||+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 355689999999999999887765 3568899998631 1 11345675332 124678999
Q ss_pred EEEcCceeeccCC----hHHHHHHHHhcccCCcEEEEEec
Q 010086 172 VFVGGARLEKASK----PLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 172 V~s~~~~l~~~~d----p~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
|++... -.+.+. -..+++.+.|.|+|||+++.+..
T Consensus 169 Ii~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 169 IIVDSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred EEEcCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 998652 211111 13578999999999999988653
No 160
>PHA03412 putative methyltransferase; Provisional
Probab=97.68 E-value=0.0001 Score=73.62 Aligned_cols=85 Identities=11% Similarity=0.103 Sum_probs=58.9
Q ss_pred CCCeEEEEcCCCCHhHHHHHhc----CCCcEEEEecCCC----------CCcEEeccCCCCCCCCCceeEEEEcCcee--
Q 010086 116 QSAKSLCVETQYGQDVFALKEI----GVEDSIGIFKKSS----------KPLVISGEGHRIPFDGNTFDFVFVGGARL-- 179 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~----g~~~v~gID~s~~----------~~l~~~~da~~LPf~D~SFD~V~s~~~~l-- 179 (518)
.+.+|||+|||+|.++..+.+. +..+++++|+++. ...++.+|....++ +++||+|+++-=++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKI 127 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCc
Confidence 3679999999999999777652 2358999999742 12356788876665 67999999975211
Q ss_pred --ecc-------CChHHHHHHHHhcccCCcE
Q 010086 180 --EKA-------SKPLDFASEIVRTLKPEGF 201 (518)
Q Consensus 180 --~~~-------~dp~~~l~Ei~RVLKPGG~ 201 (518)
.+. .....+++.+.|.++||+.
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 010 1134578889997777775
No 161
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.68 E-value=7.9e-05 Score=76.50 Aligned_cols=88 Identities=14% Similarity=0.164 Sum_probs=62.6
Q ss_pred CeEEEEcCCCCHhHHHH----Hhc-C----CCcEEEEecCC----------CC------------------------Cc-
Q 010086 118 AKSLCVETQYGQDVFAL----KEI-G----VEDSIGIFKKS----------SK------------------------PL- 153 (518)
Q Consensus 118 ~rvLDVGcGtG~~~~~L----~~~-g----~~~v~gID~s~----------~~------------------------~l- 153 (518)
-||++.||+||..+..+ .+. + ..+++|+|++. ++ ..
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 69999999999876433 332 1 13799999972 00 00
Q ss_pred -----------EEeccCCCCCCC-CCceeEEEEcCceeeccCC--hHHHHHHHHhcccCCcEEEEEe
Q 010086 154 -----------VISGEGHRIPFD-GNTFDFVFVGGARLEKASK--PLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 154 -----------~~~~da~~LPf~-D~SFD~V~s~~~~l~~~~d--p~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
+.+.|..+-|++ .+.||+|+|.++ |.|+.. ..++++.+++.|||||++++.-
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNv-liyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNV-MIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhH-HhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 123455444554 688999999998 888754 4578999999999999887743
No 162
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.64 E-value=0.00021 Score=69.72 Aligned_cols=90 Identities=18% Similarity=0.204 Sum_probs=54.9
Q ss_pred CCCC-eEEEEcCCCCHhHHHHHhc-CCCcEEEEecCC------------------CCCcEEeccCCCC------CCCCCc
Q 010086 115 SQSA-KSLCVETQYGQDVFALKEI-GVEDSIGIFKKS------------------SKPLVISGEGHRI------PFDGNT 168 (518)
Q Consensus 115 ~~~~-rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~------------------~~~l~~~~da~~L------Pf~D~S 168 (518)
++.. +||+||+|||+-+..+++. ....-.--|..+ .+|+.+......- ++..++
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCC
Confidence 4444 5999999999998777652 211111112111 0122221111111 234679
Q ss_pred eeEEEEcCceeeccCCh--HHHHHHHHhcccCCcEEEEE
Q 010086 169 FDFVFVGGARLEKASKP--LDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 169 FD~V~s~~~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi~ 205 (518)
||+|+|.+. +|-++-. +.+++++.++|||||.+++-
T Consensus 103 ~D~i~~~N~-lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 103 FDAIFCINM-LHISPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred cceeeehhH-HHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 999999996 6555432 36789999999999998874
No 163
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.63 E-value=0.00011 Score=73.88 Aligned_cols=90 Identities=21% Similarity=0.225 Sum_probs=62.7
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHh-cC-CCcEEEEecCCC--------------C--CcEEeccCCCCCCC---CCce
Q 010086 111 EGYLSQSAKSLCVETQYGQDVFALKE-IG-VEDSIGIFKKSS--------------K--PLVISGEGHRIPFD---GNTF 169 (518)
Q Consensus 111 ~gll~~~~rvLDVGcGtG~~~~~L~~-~g-~~~v~gID~s~~--------------~--~l~~~~da~~LPf~---D~SF 169 (518)
..-++||++||+.|+|+|.++.+|.+ .| .++|+..|..+. . ..+...|..+--|+ ++.|
T Consensus 35 ~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~ 114 (247)
T PF08704_consen 35 RLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDF 114 (247)
T ss_dssp HTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSE
T ss_pred HcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcc
Confidence 34579999999999999999988886 33 469999998631 1 12346676554453 3689
Q ss_pred eEEEEcCceeeccCChHHHHHHHHhcc-cCCcEEEEEe
Q 010086 170 DFVFVGGARLEKASKPLDFASEIVRTL-KPEGFAVVHV 206 (518)
Q Consensus 170 D~V~s~~~~l~~~~dp~~~l~Ei~RVL-KPGG~lvi~~ 206 (518)
|.||-- +++|+.++..+.++| ||||++++-+
T Consensus 115 DavfLD------lp~Pw~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 115 DAVFLD------LPDPWEAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp EEEEEE------SSSGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred cEEEEe------CCCHHHHHHHHHHHHhcCCceEEEEC
Confidence 998863 478999999999999 9999988765
No 164
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.00079 Score=65.82 Aligned_cols=120 Identities=16% Similarity=0.119 Sum_probs=77.6
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCCCC----cEEeccCCCCC--------CCCCceeEEEEcCc
Q 010086 112 GYLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSSKP----LVISGEGHRIP--------FDGNTFDFVFVGGA 177 (518)
Q Consensus 112 gll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~~~----l~~~~da~~LP--------f~D~SFD~V~s~~~ 177 (518)
++++++.+|+|+|+-+|..++.+++. + ...|+|+|+.+..+ ..+++|.+.=+ ++...+|+|+|-.+
T Consensus 41 ~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~a 120 (205)
T COG0293 41 KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMA 120 (205)
T ss_pred CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCC
Confidence 57899999999999999999877763 3 13599999976432 24566554322 44556899998664
Q ss_pred e----e---eccC--Ch-HHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhcc-CccEEEEeccC
Q 010086 178 R----L---EKAS--KP-LDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFN-SCKLVKSRDID 233 (518)
Q Consensus 178 ~----l---~~~~--dp-~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~-~~~~v~~~~v~ 233 (518)
. . +|.- .. ..++.-+.++|+|||.+++-+-+++.+ +.++..++ .|+.|...++.
T Consensus 121 p~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~--~~~l~~~~~~F~~v~~~KP~ 185 (205)
T COG0293 121 PNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDF--EDLLKALRRLFRKVKIFKPK 185 (205)
T ss_pred CCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCH--HHHHHHHHHhhceeEEecCc
Confidence 0 1 2211 01 134455667999999999875444432 34444443 56777777753
No 165
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.58 E-value=0.00021 Score=71.98 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=51.4
Q ss_pred HHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------------CCcEEeccCCCCCCCCCceeEEEE
Q 010086 108 LISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------------KPLVISGEGHRIPFDGNTFDFVFV 174 (518)
Q Consensus 108 L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------------~~l~~~~da~~LPf~D~SFD~V~s 174 (518)
+++..-+.++.+|||||||+|..+..+.+.+ .+++|+|+++. ...++.+|+.++++++ ||.|++
T Consensus 21 iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~--~d~Vv~ 97 (258)
T PRK14896 21 IVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPE--FNKVVS 97 (258)
T ss_pred HHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchh--ceEEEE
Confidence 3333335678999999999999999888875 68999999741 1235688999888764 899999
Q ss_pred cCc
Q 010086 175 GGA 177 (518)
Q Consensus 175 ~~~ 177 (518)
+.-
T Consensus 98 NlP 100 (258)
T PRK14896 98 NLP 100 (258)
T ss_pred cCC
Confidence 763
No 166
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00029 Score=72.11 Aligned_cols=99 Identities=21% Similarity=0.324 Sum_probs=65.4
Q ss_pred eEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCCC-----------C----cEEeccCCCCCCCCCceeEEEEcCceeecc
Q 010086 119 KSLCVETQYGQDVFALKEIG-VEDSIGIFKKSSK-----------P----LVISGEGHRIPFDGNTFDFVFVGGARLEKA 182 (518)
Q Consensus 119 rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~~-----------~----l~~~~da~~LPf~D~SFD~V~s~~~~l~~~ 182 (518)
+|||+|||+|..+.+++... ..+|+|+|+|+.. . ..+++|.- -+... .||+|+|+-=++..-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf-~~~~~-~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLF-EPLRG-KFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecc-cccCC-ceeEEEeCCCCCCCc
Confidence 79999999999999888754 3599999998521 1 12233211 12333 899999975223221
Q ss_pred ----------CCh--------------HHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhcc
Q 010086 183 ----------SKP--------------LDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFN 222 (518)
Q Consensus 183 ----------~dp--------------~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~ 222 (518)
-+| .+++.++.+.|+|||.+++..+.+.. ..+.++|.
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~---~~v~~~~~ 251 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQG---EAVKALFE 251 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcH---HHHHHHHH
Confidence 122 24678899999999999999875443 34555543
No 167
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.55 E-value=0.00025 Score=70.66 Aligned_cols=91 Identities=16% Similarity=0.231 Sum_probs=64.2
Q ss_pred CCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC-------------------C------------------------
Q 010086 116 QSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS-------------------K------------------------ 151 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~-------------------~------------------------ 151 (518)
.+..+|||||.+|.++..+++ .|...+.|+|+.+. .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 356899999999999988876 57778999998620 0
Q ss_pred ----Cc--------EEeccCCCCCCCCCceeEEEEcCc----eeeccCC-hHHHHHHHHhcccCCcEEEEEe
Q 010086 152 ----PL--------VISGEGHRIPFDGNTFDFVFVGGA----RLEKASK-PLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 152 ----~l--------~~~~da~~LPf~D~SFD~V~s~~~----~l~~~~d-p~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
+. .+.....-|.+.+..||+|+|... +|.|=++ ..++++-|.|.|.|||++++.-
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 00 011122223466789999999874 2333222 3478999999999999999964
No 168
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.51 E-value=0.00062 Score=69.32 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=79.7
Q ss_pred hccCChhHHHHHhhHHHHHHHHHHcCC----CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC-------------
Q 010086 87 DMYTSKEWIKAVNFYSSVFQDLISEGY----LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS------------- 149 (518)
Q Consensus 87 ~~w~s~~wr~~v~~~~~l~~~L~~~gl----l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~------------- 149 (518)
+=|.+..=...-..+..++..|.+.-. -+...+||.=|||.|+++..++..|+ .+.|.+.|-
T Consensus 23 RDWS~eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~ 101 (270)
T PF07942_consen 23 RDWSSEGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHC 101 (270)
T ss_pred hhCchhhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHccc
Confidence 445543222233466667666655422 13356999999999999999999984 899999761
Q ss_pred ----------C-------------------C---C----------cEEeccCCCCCCCC---CceeEEEEcCceeeccCC
Q 010086 150 ----------S-------------------K---P----------LVISGEGHRIPFDG---NTFDFVFVGGARLEKASK 184 (518)
Q Consensus 150 ----------~-------------------~---~----------l~~~~da~~LPf~D---~SFD~V~s~~~~l~~~~d 184 (518)
+ | + ....||..++.-++ ++||+|++.+- ++-..|
T Consensus 102 ~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FF-IDTA~N 180 (270)
T PF07942_consen 102 SQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFF-IDTAEN 180 (270)
T ss_pred CCCCcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEE-eechHH
Confidence 0 1 0 01256777765555 79999998774 666667
Q ss_pred hHHHHHHHHhcccCCcEEE
Q 010086 185 PLDFASEIVRTLKPEGFAV 203 (518)
Q Consensus 185 p~~~l~Ei~RVLKPGG~lv 203 (518)
.-..+..|+++|||||+.+
T Consensus 181 i~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 181 IIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred HHHHHHHHHHHhccCCEEE
Confidence 7889999999999999543
No 169
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.50 E-value=0.00015 Score=75.46 Aligned_cols=88 Identities=18% Similarity=0.077 Sum_probs=63.9
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCc-
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGA- 177 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~- 177 (518)
+-.+..|||||||||.++..-++.|..+|+|+|.|.- -..+++|.++++-+|-+.+|.|+|-..
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 3467899999999999998888889889999998731 122457888877777899999998652
Q ss_pred e--e-eccCChHHHHHHHHhcccCCcEEE
Q 010086 178 R--L-EKASKPLDFASEIVRTLKPEGFAV 203 (518)
Q Consensus 178 ~--l-~~~~dp~~~l~Ei~RVLKPGG~lv 203 (518)
+ | +.+ ...++-.=.|-|+|||.++
T Consensus 138 y~Ll~EsM--ldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESM--LDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHHhhh--hhhhhhhhhhccCCCceEc
Confidence 0 1 111 2234444568999999753
No 170
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.48 E-value=0.00028 Score=71.64 Aligned_cols=68 Identities=10% Similarity=0.038 Sum_probs=51.4
Q ss_pred HHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------CCcEEeccCCCCCCCCCceeEEEEc
Q 010086 108 LISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------KPLVISGEGHRIPFDGNTFDFVFVG 175 (518)
Q Consensus 108 L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------~~l~~~~da~~LPf~D~SFD~V~s~ 175 (518)
+++...+.++.+|||||||+|..+..+.+.+ .+++|+|+++. ...++.+|+.++++++-.+|.|+++
T Consensus 34 i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 34 IVDAAGPQPGDNVLEIGPGLGALTEPLLERA-AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred HHHhcCCCCcCeEEEeCCCccHHHHHHHHhC-CcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEe
Confidence 3333345678899999999999999888876 59999999852 1235688999988876446888776
Q ss_pred C
Q 010086 176 G 176 (518)
Q Consensus 176 ~ 176 (518)
-
T Consensus 113 l 113 (272)
T PRK00274 113 L 113 (272)
T ss_pred C
Confidence 4
No 171
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.46 E-value=0.00085 Score=71.33 Aligned_cols=115 Identities=9% Similarity=0.027 Sum_probs=75.5
Q ss_pred CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCC-CCCCceeEEEEcCcee
Q 010086 116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIP-FDGNTFDFVFVGGARL 179 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LP-f~D~SFD~V~s~~~~l 179 (518)
++.++||++||+|.++..++..+ ..|+|||+++. ...++.+|+.+.. -..+.||+|+..-- -
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP-r 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP-R 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC-C
Confidence 45799999999999998888766 78999998742 1124567765432 11246999988542 1
Q ss_pred eccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEEeccCCCCCC
Q 010086 180 EKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSS 238 (518)
Q Consensus 180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~v~~~~~~ 238 (518)
..+ ..++++.+. -++|++++++..... .-...+..| ..|++..+.-+|.|=.+
T Consensus 311 ~G~--~~~~l~~l~-~~~p~~ivyvsc~p~--TlaRDl~~L-~gy~l~~~~~~DmFPqT 363 (374)
T TIGR02085 311 RGI--GKELCDYLS-QMAPKFILYSSCNAQ--TMAKDIAEL-SGYQIERVQLFDMFPHT 363 (374)
T ss_pred CCC--cHHHHHHHH-hcCCCeEEEEEeCHH--HHHHHHHHh-cCceEEEEEEeccCCCC
Confidence 111 124455554 489999998876422 112344444 78999999998886543
No 172
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.44 E-value=0.00081 Score=67.42 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=51.0
Q ss_pred HHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------------CCcEEeccCCCCCCCCCcee-
Q 010086 105 FQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------------KPLVISGEGHRIPFDGNTFD- 170 (518)
Q Consensus 105 ~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------------~~l~~~~da~~LPf~D~SFD- 170 (518)
.+.+++...+.++.+|||||||+|..+..|.+.+ ..++++|+++. ...++.+|+.++|++ +||
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~ 94 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPK 94 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCC
Confidence 3344444445678899999999999999998876 57999998741 113467899998886 566
Q ss_pred --EEEEcC
Q 010086 171 --FVFVGG 176 (518)
Q Consensus 171 --~V~s~~ 176 (518)
.|+++.
T Consensus 95 ~~~vvsNl 102 (253)
T TIGR00755 95 QLKVVSNL 102 (253)
T ss_pred cceEEEcC
Confidence 777654
No 173
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.42 E-value=0.00026 Score=78.21 Aligned_cols=93 Identities=14% Similarity=0.052 Sum_probs=65.4
Q ss_pred CCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC-------------C-C-cEEeccCCCC--CCCCCceeEEEEcCc
Q 010086 116 QSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS-------------K-P-LVISGEGHRI--PFDGNTFDFVFVGGA 177 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~-------------~-~-l~~~~da~~L--Pf~D~SFD~V~s~~~ 177 (518)
.+..+||||||.|..+..++.. .-..++|||+... . . .++.++++.+ -|+++++|.|+..+-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 4568999999999999888764 3468999998631 0 1 1234555433 378999999998652
Q ss_pred eeeccC-----C---hHHHHHHHHhcccCCcEEEEEecCC
Q 010086 178 RLEKAS-----K---PLDFASEIVRTLKPEGFAVVHVRAK 209 (518)
Q Consensus 178 ~l~~~~-----d---p~~~l~Ei~RVLKPGG~lvi~~~~~ 209 (518)
=-|.. . -..++++++|+|||||.+.+.+...
T Consensus 427 -DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~ 465 (506)
T PRK01544 427 -DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIE 465 (506)
T ss_pred -CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCH
Confidence 11110 0 1258999999999999999987543
No 174
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.41 E-value=0.00014 Score=78.81 Aligned_cols=110 Identities=18% Similarity=0.289 Sum_probs=75.2
Q ss_pred ChhHHHHHhhHHHHHHHHHHcCCCCCC--CeEEEEcCCCCHhHHHHHhcCC--CcEEEEecCCCCCcE--------Eecc
Q 010086 91 SKEWIKAVNFYSSVFQDLISEGYLSQS--AKSLCVETQYGQDVFALKEIGV--EDSIGIFKKSSKPLV--------ISGE 158 (518)
Q Consensus 91 s~~wr~~v~~~~~l~~~L~~~gll~~~--~rvLDVGcGtG~~~~~L~~~g~--~~v~gID~s~~~~l~--------~~~d 158 (518)
+..|++.+..|-.++.-. +..+ ..|+|+.+|.|.++.+|.+.++ .+|+-++-.+..+.+ ...=
T Consensus 343 t~~Wk~~V~~Y~~l~~~~-----i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDW 417 (506)
T PF03141_consen 343 TKHWKKRVSHYKKLLGLA-----IKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDW 417 (506)
T ss_pred HHHHHHHHHHHHHhhccc-----ccccceeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccch
Confidence 477888888777665422 2333 3699999999999999987662 223222211111111 1234
Q ss_pred CCCCCCCCCceeEEEEcCceeeccCC---hHHHHHHHHhcccCCcEEEEEe
Q 010086 159 GHRIPFDGNTFDFVFVGGARLEKASK---PLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 159 a~~LPf~D~SFD~V~s~~~~l~~~~d---p~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
.+.+|+-+.++|++-+.+. |.+..+ ....+-||.|+|||||.++|.-
T Consensus 418 CE~fsTYPRTYDLlHA~~l-fs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 418 CEAFSTYPRTYDLLHADGL-FSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hhccCCCCcchhheehhhh-hhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 5667778999999999886 666543 4578899999999999999953
No 175
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.39 E-value=4.8e-05 Score=70.89 Aligned_cols=80 Identities=16% Similarity=0.125 Sum_probs=56.0
Q ss_pred eEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCCCcEEeccC-CCCCCCCCceeEEEEcCceeeccCChH--HHHHHHHhc
Q 010086 119 KSLCVETQYGQDVFALKEIGVEDSIGIFKKSSKPLVISGEG-HRIPFDGNTFDFVFVGGARLEKASKPL--DFASEIVRT 195 (518)
Q Consensus 119 rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~~l~~~~da-~~LPf~D~SFD~V~s~~~~l~~~~dp~--~~l~Ei~RV 195 (518)
-.+-||||.=... .| -+-+|+...+.+-...++ ...+|.|+|.|+|++.++ ++|+...+ .+++|++|+
T Consensus 5 ~kv~ig~G~~r~n-----pg---Wi~~d~ed~~~vdlvc~As~e~~F~dns~d~iyaeHv-lEHlt~~Eg~~alkechr~ 75 (185)
T COG4627 5 EKVKIGAGGKRVN-----PG---WIITDVEDRPEVDLVCRASNESMFEDNSVDAIYAEHV-LEHLTYDEGTSALKECHRF 75 (185)
T ss_pred eEEEEeccccccC-----CC---ceeeehhcccccchhhhhhhhccCCCcchHHHHHHHH-HHHHhHHHHHHHHHHHHHH
Confidence 3578999963321 12 234554433322223333 456999999999999998 99987543 688999999
Q ss_pred ccCCcEEEEEec
Q 010086 196 LKPEGFAVVHVR 207 (518)
Q Consensus 196 LKPGG~lvi~~~ 207 (518)
|||||++-+++.
T Consensus 76 Lrp~G~LriAvP 87 (185)
T COG4627 76 LRPGGKLRIAVP 87 (185)
T ss_pred hCcCcEEEEEcC
Confidence 999999999875
No 176
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00088 Score=65.52 Aligned_cols=101 Identities=21% Similarity=0.294 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHh-cC--CCcEEEEecCC-------------------------C
Q 010086 99 NFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKE-IG--VEDSIGIFKKS-------------------------S 150 (518)
Q Consensus 99 ~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~-~g--~~~v~gID~s~-------------------------~ 150 (518)
..+..+|+.|.. .|+||.+.||||.|+|.++..+.. .| ...+.|||..+ .
T Consensus 67 ~mha~~le~L~~--~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~ 144 (237)
T KOG1661|consen 67 HMHATALEYLDD--HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG 144 (237)
T ss_pred HHHHHHHHHHHH--hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC
Confidence 345566665543 368999999999999999876664 22 24558988531 0
Q ss_pred CCcEEeccCCCCCCCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086 151 KPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRA 208 (518)
Q Consensus 151 ~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~ 208 (518)
...++.||....-=+.+.||.|.+..+ - .+.-+++.-.|||||.+++.+..
T Consensus 145 ~l~ivvGDgr~g~~e~a~YDaIhvGAa-a------~~~pq~l~dqL~~gGrllip~~~ 195 (237)
T KOG1661|consen 145 ELSIVVGDGRKGYAEQAPYDAIHVGAA-A------SELPQELLDQLKPGGRLLIPVGQ 195 (237)
T ss_pred ceEEEeCCccccCCccCCcceEEEccC-c------cccHHHHHHhhccCCeEEEeecc
Confidence 123567888887667889999999764 2 23457788999999999998764
No 177
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.30 E-value=0.00058 Score=73.23 Aligned_cols=92 Identities=11% Similarity=0.192 Sum_probs=60.6
Q ss_pred CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------C---CcEEeccCCCCC--C--CCCceeEEE
Q 010086 115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------K---PLVISGEGHRIP--F--DGNTFDFVF 173 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~---~l~~~~da~~LP--f--~D~SFD~V~ 173 (518)
.++.+|||+|||+|.++......|..+|+++|+++. . ..++++|+.+.. + .+++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 467899999999999876555456569999999841 1 124567765531 2 356899999
Q ss_pred EcCceeeccC--------ChHHHHHHHHhcccCCcEEEEEe
Q 010086 174 VGGARLEKAS--------KPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 174 s~~~~l~~~~--------dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
+.-=+|..-. +-...+..+.+.|||||+++...
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 8742121100 01123445789999999988754
No 178
>PLN02672 methionine S-methyltransferase
Probab=97.23 E-value=0.0012 Score=78.41 Aligned_cols=94 Identities=10% Similarity=0.005 Sum_probs=64.2
Q ss_pred CCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC-------------------------------CCcEEeccCCCCCC
Q 010086 117 SAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS-------------------------------KPLVISGEGHRIPF 164 (518)
Q Consensus 117 ~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~-------------------------------~~l~~~~da~~LPf 164 (518)
+.+|||+|||+|..+..+++.. ...++|+|+|+. ...++++|..+ ++
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~-~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLG-YC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhh-hc
Confidence 4689999999999998887643 368999999841 01234566543 23
Q ss_pred CC--CceeEEEEcCceeec-----c----------------------------CCh----HHHHHHHHhcccCCcEEEEE
Q 010086 165 DG--NTFDFVFVGGARLEK-----A----------------------------SKP----LDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 165 ~D--~SFD~V~s~~~~l~~-----~----------------------------~dp----~~~l~Ei~RVLKPGG~lvi~ 205 (518)
.+ ..||+|+|+-=++.. + .|. .+.+.++.++|||||.+++.
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 33 369999997521211 0 000 35678899999999999999
Q ss_pred ecCCCc
Q 010086 206 VRAKDE 211 (518)
Q Consensus 206 ~~~~~~ 211 (518)
++....
T Consensus 278 iG~~q~ 283 (1082)
T PLN02672 278 MGGRPG 283 (1082)
T ss_pred ECccHH
Confidence 875543
No 179
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.22 E-value=0.0056 Score=62.40 Aligned_cols=117 Identities=11% Similarity=0.055 Sum_probs=72.3
Q ss_pred hhhccCChhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHH----HhcC------CCcEEEEecCC-----
Q 010086 85 RRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFAL----KEIG------VEDSIGIFKKS----- 149 (518)
Q Consensus 85 ~~~~w~s~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L----~~~g------~~~v~gID~s~----- 149 (518)
..-+|++..|..- -..++..|+....- ..-+|+..||+||.....+ .+.+ ...++|.|++.
T Consensus 69 T~FFR~~~~f~~l---~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~ 144 (268)
T COG1352 69 TEFFRDPEHFEEL---RDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEK 144 (268)
T ss_pred chhccCcHHHHHH---HHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHH
Confidence 3445555544442 22344444433221 3469999999999876433 3322 24799999872
Q ss_pred -----CC----------------------Cc------------EEeccCCCCCCCCCceeEEEEcCceeeccCCh--HHH
Q 010086 150 -----SK----------------------PL------------VISGEGHRIPFDGNTFDFVFVGGARLEKASKP--LDF 188 (518)
Q Consensus 150 -----~~----------------------~l------------~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp--~~~ 188 (518)
++ .. +.+.|...-++..+-||+|+|.++ +-.+..+ .+.
T Consensus 145 A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNV-LIYFd~~~q~~i 223 (268)
T COG1352 145 ARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNV-LIYFDEETQERI 223 (268)
T ss_pred HhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcce-EEeeCHHHHHHH
Confidence 11 00 012233222324567999999998 6666554 468
Q ss_pred HHHHHhcccCCcEEEEEe
Q 010086 189 ASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 189 l~Ei~RVLKPGG~lvi~~ 206 (518)
+..++..|+|||++++.-
T Consensus 224 l~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 224 LRRFADSLKPGGLLFLGH 241 (268)
T ss_pred HHHHHHHhCCCCEEEEcc
Confidence 999999999999999954
No 180
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=97.20 E-value=0.0027 Score=60.22 Aligned_cols=171 Identities=18% Similarity=0.310 Sum_probs=87.6
Q ss_pred CCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhc-----cCCceEEEee--ceeecCCceEEEec
Q 010086 317 KNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYK-----VKKKVKLLPY--AAWVRNETLSFQIN 389 (518)
Q Consensus 317 ~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~-----~~~~V~~~~~--Av~~~~~tl~f~~~ 389 (518)
+.+-.|||+||| .|+ .-.--.++-..+ .|.|+||=.....+.+ +.|=|.++.. |++-.+|.--|++-
T Consensus 78 khdttyidigan-vgt-fcgiaarhitqg----kiiaiepltemensirmnvqlnnplvefhhfgcaigenegenifevy 151 (286)
T PF05575_consen 78 KHDTTYIDIGAN-VGT-FCGIAARHITQG----KIIAIEPLTEMENSIRMNVQLNNPLVEFHHFGCAIGENEGENIFEVY 151 (286)
T ss_pred cCCceEEEeccc-ccc-chhhhhhhcccC----ceEEEechhhhhhheeeeeeeCCcceeeeecceeecccCCcceEEEE
Confidence 467789999999 575 212223333322 6999999776544432 4566666655 45554444444322
Q ss_pred CCCCcchhhcccCCccc-cccccCCCCCCCCCcceeecccHHHHHhhc-CCCCCeEEEEeeccchhhhhHHHHHh-cCCc
Q 010086 390 HDPDKEVVVKGRGMGRI-QPVQSLSDGGFDGEVDRIQGFDFADWLKNT-VTDKDFVVMKMDVEGTEFDLIPRLFE-TGAI 466 (518)
Q Consensus 390 ~~~~~~~~~~~~g~~~i-~p~~~~~~~~~~g~~~~v~~vd~s~wl~~~-v~~~D~VVlKMDIEGaE~~vL~~l~~-~g~i 466 (518)
.-+. + .+++ .+...+. .+.+.-..+ +.+=|... +.+..-||+|+|.||||.++|..+.+ +.-.
T Consensus 152 efdn-------r-vsslyfqkntdi-----adkvknsqv-lvrklssldisptnsvvikidaegaeieilnqiyeftekh 217 (286)
T PF05575_consen 152 EFDN-------R-VSSLYFQKNTDI-----ADKVKNSQV-LVRKLSSLDISPTNSVVIKIDAEGAEIEILNQIYEFTEKH 217 (286)
T ss_pred EecC-------c-cceEEEeccCcH-----HHhhcchHH-HHhhhhccccCCCceEEEEEcCCCcchhHHHHHHHHHhhc
Confidence 2111 1 0111 0000000 000000000 11112222 45667899999999999999999865 3333
Q ss_pred cccc-EEEEEeecccccccCCCCCCCcccccHHHHHHHHHH-HhhCCeeeee
Q 010086 467 CLID-EIFLECHYNRWQRCCPGQRSPKYKKTYEQCLELFTS-LRQNGVLVHQ 516 (518)
Q Consensus 467 ~~ID-eLfvE~H~~~~~~~~~g~~~~~~~~~~~~cl~L~~~-LR~~Gv~vHq 516 (518)
.-|. .+-.|+--.+. || +.+|..|-..++.+ .-++..++|.
T Consensus 218 ngieyyicfefamghi------qr---snrtfdeifniinskfgskayfihp 260 (286)
T PF05575_consen 218 NGIEYYICFEFAMGHI------QR---SNRTFDEIFNIINSKFGSKAYFIHP 260 (286)
T ss_pred CCeEEEEEehhhhhhh------hh---ccccHHHHHHHHhhcccCceEEeec
Confidence 3332 22334443333 33 35888888776543 4455566653
No 181
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.16 E-value=0.0024 Score=60.98 Aligned_cols=98 Identities=14% Similarity=0.110 Sum_probs=60.1
Q ss_pred HHHcCCCCCCCeEEEEcCCCCHhHHHHHh--cCCC--------cEEEEecCCC----------------CCcEEeccCCC
Q 010086 108 LISEGYLSQSAKSLCVETQYGQDVFALKE--IGVE--------DSIGIFKKSS----------------KPLVISGEGHR 161 (518)
Q Consensus 108 L~~~gll~~~~rvLDVGcGtG~~~~~L~~--~g~~--------~v~gID~s~~----------------~~l~~~~da~~ 161 (518)
|+.....+++..+||--||+|......+. .... .++|.|+++. ...+.+.|+.+
T Consensus 20 ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~ 99 (179)
T PF01170_consen 20 LLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARE 99 (179)
T ss_dssp HHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGG
T ss_pred HHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhh
Confidence 44444567889999999999998744332 2222 3889999731 12356789999
Q ss_pred CCCCCCceeEEEEcCc-eeeccCCh-------HHHHHHHHhcccCCcEEEEEec
Q 010086 162 IPFDGNTFDFVFVGGA-RLEKASKP-------LDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 162 LPf~D~SFD~V~s~~~-~l~~~~dp-------~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
+|+.++++|.|++.-= ... +... ..+++|+.|+|+| ..+++...
T Consensus 100 l~~~~~~~d~IvtnPPyG~r-~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~ 151 (179)
T PF01170_consen 100 LPLPDGSVDAIVTNPPYGRR-LGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTS 151 (179)
T ss_dssp GGGTTSBSCEEEEE--STTS-HCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEES
T ss_pred cccccCCCCEEEECcchhhh-ccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEEC
Confidence 9999999999999751 011 1111 2467999999999 44444443
No 182
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.10 E-value=0.00032 Score=74.83 Aligned_cols=84 Identities=18% Similarity=0.211 Sum_probs=61.6
Q ss_pred CCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCceee
Q 010086 117 SAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGARLE 180 (518)
Q Consensus 117 ~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~ 180 (518)
+.+|||++||+|..+..++. .+...|+++|+++. ...+..+|+..+....+.||+|+..- +
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP--~- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP--F- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC--C-
Confidence 46899999999999977754 45568999999742 11245677765432246799999853 3
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEE
Q 010086 181 KASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 181 ~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
-.|..++....+.++|||+++++
T Consensus 135 --Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 --GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred --CCcHHHHHHHHHHhcCCCEEEEE
Confidence 23567788878889999999998
No 183
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.09 E-value=0.0021 Score=63.66 Aligned_cols=88 Identities=19% Similarity=0.311 Sum_probs=62.6
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHh-cC-CCcEEEEecCCC--------------CC--cEEe-ccCCCC-C-CCCCceeEE
Q 010086 114 LSQSAKSLCVETQYGQDVFALKE-IG-VEDSIGIFKKSS--------------KP--LVIS-GEGHRI-P-FDGNTFDFV 172 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~-~g-~~~v~gID~s~~--------------~~--l~~~-~da~~L-P-f~D~SFD~V 172 (518)
++...+||+||++.|..+..++. .. -++++.||+++. .. ..+. +|+.+. . +.+++||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 35678999999999999887775 22 358999998741 11 1223 344322 2 568999999
Q ss_pred EEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 173 FVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 173 ~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
|.-.. .. +-..++.++.+.|||||++++-
T Consensus 137 FIDad---K~-~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 137 FIDAD---KA-DYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred EEeCC---hh-hCHHHHHHHHHHhCCCcEEEEe
Confidence 98542 21 2237899999999999999985
No 184
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.08 E-value=0.0025 Score=69.51 Aligned_cols=84 Identities=19% Similarity=0.202 Sum_probs=55.3
Q ss_pred CCeEEEEcCCCCHhHHHHHhcC-----CCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEc
Q 010086 117 SAKSLCVETQYGQDVFALKEIG-----VEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVG 175 (518)
Q Consensus 117 ~~rvLDVGcGtG~~~~~L~~~g-----~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~ 175 (518)
+..|||||||+|-++....+.+ ..+|++|+.++. ...++++|.+++..|. .+|+|+|-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEe
Confidence 4679999999999985443332 469999998742 2235789999987765 89999986
Q ss_pred CceeeccC---ChHHHHHHHHhcccCCcEEE
Q 010086 176 GARLEKAS---KPLDFASEIVRTLKPEGFAV 203 (518)
Q Consensus 176 ~~~l~~~~---dp~~~l~Ei~RVLKPGG~lv 203 (518)
. |-.+- --...+.-..|.|||||+.+
T Consensus 266 l--LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 L--LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred c--cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 5 32221 12256888899999999743
No 185
>PLN02476 O-methyltransferase
Probab=97.04 E-value=0.0025 Score=65.30 Aligned_cols=88 Identities=18% Similarity=0.287 Sum_probs=61.7
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC----------------CCcEEeccCCC-CC-C----CCCce
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS----------------KPLVISGEGHR-IP-F----DGNTF 169 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~----------------~~l~~~~da~~-LP-f----~D~SF 169 (518)
+.+..+||+|||++|..+..+++. + .+.++++|.++. ...++.|++.+ || + .+++|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 345689999999999999887752 2 257999998741 12234566543 22 2 24689
Q ss_pred eEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 170 DFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 170 D~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
|+||.-.. . .+-...+..+.+.|||||++++-
T Consensus 196 D~VFIDa~---K-~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 196 DFAFVDAD---K-RMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CEEEECCC---H-HHHHHHHHHHHHhcCCCcEEEEe
Confidence 99998652 1 12346788999999999999884
No 186
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.03 E-value=0.004 Score=61.41 Aligned_cols=115 Identities=19% Similarity=0.209 Sum_probs=67.2
Q ss_pred CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------C--Cc---EEeccCCCCCCCCCceeEEEEcCceee
Q 010086 116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------K--PL---VISGEGHRIPFDGNTFDFVFVGGARLE 180 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------~--~l---~~~~da~~LPf~D~SFD~V~s~~~~l~ 180 (518)
...++||.|+|-|+.+..|--.-+..|--+|..+. . .. +.+...++.--+.+.+|+|++.-+ +-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~-lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWC-LG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES--GG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHh-hc
Confidence 35699999999999997654323566767775421 1 11 112222222223579999999987 89
Q ss_pred ccCChH--HHHHHHHhcccCCcEEEEE--ecCCCc-----------cCchhHhhhccC--ccEEEEec
Q 010086 181 KASKPL--DFASEIVRTLKPEGFAVVH--VRAKDE-----------YSFNSFLDLFNS--CKLVKSRD 231 (518)
Q Consensus 181 ~~~dp~--~~l~Ei~RVLKPGG~lvi~--~~~~~~-----------~s~~~~~~lf~~--~~~v~~~~ 231 (518)
|+.|.+ .+++-+...|+|||++++= +...+. .+...+++||+. +++++...
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~ 201 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEK 201 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEecc
Confidence 988654 7889999999999999984 322221 233457777763 45555444
No 187
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.02 E-value=0.0047 Score=59.56 Aligned_cols=93 Identities=17% Similarity=0.083 Sum_probs=64.2
Q ss_pred cCCCCCCC-eEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEE
Q 010086 111 EGYLSQSA-KSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVF 173 (518)
Q Consensus 111 ~gll~~~~-rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~ 173 (518)
.-+++... +++|||+|.|.-...|+- .+..+++-+|.... ...++.+.+++ +-..++||+|+
T Consensus 42 ~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~ 120 (184)
T PF02527_consen 42 LPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVT 120 (184)
T ss_dssp GGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEE
T ss_pred hhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEE
Confidence 33455554 999999999987655543 23357999996521 12345677777 67789999999
Q ss_pred EcCceeeccCChHHHHHHHHhcccCCcEEEEEecCC
Q 010086 174 VGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAK 209 (518)
Q Consensus 174 s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~ 209 (518)
+..+ ......+.-+.+.|||||.+++.-+..
T Consensus 121 aRAv-----~~l~~l~~~~~~~l~~~G~~l~~KG~~ 151 (184)
T PF02527_consen 121 ARAV-----APLDKLLELARPLLKPGGRLLAYKGPD 151 (184)
T ss_dssp EESS-----SSHHHHHHHHGGGEEEEEEEEEEESS-
T ss_pred eehh-----cCHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence 9874 345678888999999999998876543
No 188
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.00 E-value=0.0071 Score=58.34 Aligned_cols=92 Identities=12% Similarity=-0.011 Sum_probs=59.6
Q ss_pred CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------C--CcEEeccCCC-CC-C-CCC-ceeEEEEc
Q 010086 116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------K--PLVISGEGHR-IP-F-DGN-TFDFVFVG 175 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~--~l~~~~da~~-LP-f-~D~-SFD~V~s~ 175 (518)
.+.++||++||+|.+...+...|...|+++|.++. . ..++++|+.. +. + ..+ .||+|+.-
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 57899999999999998877778678999998741 1 1245667633 22 2 223 47888875
Q ss_pred CceeeccCChHHHHHHH--HhcccCCcEEEEEecCC
Q 010086 176 GARLEKASKPLDFASEI--VRTLKPEGFAVVHVRAK 209 (518)
Q Consensus 176 ~~~l~~~~dp~~~l~Ei--~RVLKPGG~lvi~~~~~ 209 (518)
-- +.. ......+.-+ ...|+++|++++.....
T Consensus 129 PP-y~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~~~ 162 (189)
T TIGR00095 129 PP-FFN-GALQALLELCENNWILEDTVLIVVEEDRE 162 (189)
T ss_pred cC-CCC-CcHHHHHHHHHHCCCCCCCeEEEEEecCC
Confidence 43 221 1123333333 34799999999876543
No 189
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=96.96 E-value=0.0019 Score=66.58 Aligned_cols=70 Identities=19% Similarity=0.261 Sum_probs=49.8
Q ss_pred HHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCCCCCCC
Q 010086 104 VFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGN 167 (518)
Q Consensus 104 l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~ 167 (518)
+.+.+++...+.++.+|||||||+|.++..+.+.+ .+++|+|+++. ...++.+|+.+.+++
T Consensus 24 i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~-- 100 (294)
T PTZ00338 24 VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP-- 100 (294)
T ss_pred HHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--
Confidence 33344444456788999999999999998888765 68999999741 012457777665553
Q ss_pred ceeEEEEcC
Q 010086 168 TFDFVFVGG 176 (518)
Q Consensus 168 SFD~V~s~~ 176 (518)
.||.|+++.
T Consensus 101 ~~d~VvaNl 109 (294)
T PTZ00338 101 YFDVCVANV 109 (294)
T ss_pred ccCEEEecC
Confidence 578887764
No 190
>PRK04148 hypothetical protein; Provisional
Probab=96.96 E-value=0.0038 Score=57.27 Aligned_cols=60 Identities=13% Similarity=0.011 Sum_probs=46.6
Q ss_pred CCCeEEEEcCCCCH-hHHHHHhcCCCcEEEEecCCCC--------CcEEeccCCCCCCC-CCceeEEEEcC
Q 010086 116 QSAKSLCVETQYGQ-DVFALKEIGVEDSIGIFKKSSK--------PLVISGEGHRIPFD-GNTFDFVFVGG 176 (518)
Q Consensus 116 ~~~rvLDVGcGtG~-~~~~L~~~g~~~v~gID~s~~~--------~l~~~~da~~LPf~-D~SFD~V~s~~ 176 (518)
++.++||||||+|. .+..|++.| .+|+++|+++.. ..++.+|.-+-++. -..+|+|++..
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G-~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysir 85 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESG-FDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIR 85 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCC-CEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeC
Confidence 45799999999996 788899888 699999998642 23567777665554 56799999865
No 191
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.87 E-value=0.0061 Score=62.59 Aligned_cols=86 Identities=20% Similarity=0.289 Sum_probs=61.6
Q ss_pred CeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC-----------C------C--cEEeccCCCC-C-CCCCceeEEEEc
Q 010086 118 AKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS-----------K------P--LVISGEGHRI-P-FDGNTFDFVFVG 175 (518)
Q Consensus 118 ~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~-----------~------~--l~~~~da~~L-P-f~D~SFD~V~s~ 175 (518)
.+||-||.|.|..+..+.+. ...+++.+|+.+. + + .++.+|+.+. . ++. +||+|++-
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~-~fDvIi~D 156 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE-KFDVIIVD 156 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCC-cCCEEEEc
Confidence 49999999999999777664 4679999998731 0 1 1334555432 2 333 89999986
Q ss_pred CceeeccCCh------HHHHHHHHhcccCCcEEEEEec
Q 010086 176 GARLEKASKP------LDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 176 ~~~l~~~~dp------~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
.. +. .-| ..+++.+.|.|||+|+++.+..
T Consensus 157 ~t--dp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 157 ST--DP-VGPAEALFTEEFYEGCRRALKEDGIFVAQAG 191 (282)
T ss_pred CC--CC-CCcccccCCHHHHHHHHHhcCCCcEEEEecC
Confidence 53 33 123 5789999999999999999843
No 192
>PHA01634 hypothetical protein
Probab=96.87 E-value=0.0017 Score=58.98 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=32.2
Q ss_pred CceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhc
Q 010086 318 NRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYK 365 (518)
Q Consensus 318 ~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~ 365 (518)
+++.++|+||+ +|+|- -||.-.=- + .|+++||+|.+.+.+.
T Consensus 28 k~KtV~dIGA~-iGdSa-iYF~l~GA---K--~Vva~E~~~kl~k~~e 68 (156)
T PHA01634 28 YQRTIQIVGAD-CGSSA-LYFLLRGA---S--FVVQYEKEEKLRKKWE 68 (156)
T ss_pred cCCEEEEecCC-ccchh-hHHhhcCc---c--EEEEeccCHHHHHHHH
Confidence 47889999998 78876 58874332 2 8999999999887765
No 193
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=96.84 E-value=0.0045 Score=58.72 Aligned_cols=93 Identities=16% Similarity=0.183 Sum_probs=57.6
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC-----------C----Cc--EEe---ccCC-CCCCCCCceeE
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS-----------K----PL--VIS---GEGH-RIPFDGNTFDF 171 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~-----------~----~l--~~~---~da~-~LPf~D~SFD~ 171 (518)
..++.+||++|||+|.....++.. +..+|+..|..+. . .. +.. ++.. .-.+....||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 456789999999999988888777 5679999997631 0 00 111 1111 00124568999
Q ss_pred EEEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086 172 VFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 172 V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
|+.+.. +..-..-..+++=+.+.|+|+|.+++...
T Consensus 123 IlasDv-~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 123 ILASDV-LYDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEES---S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEecc-cchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 999997 54434455678889999999999776654
No 194
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=96.83 E-value=0.0023 Score=62.66 Aligned_cols=86 Identities=22% Similarity=0.380 Sum_probs=60.3
Q ss_pred CCCeEEEEcCCCCHhHHHHHh-cC-CCcEEEEecCCC----------------CCcEEeccCCC-CC-C----CCCceeE
Q 010086 116 QSAKSLCVETQYGQDVFALKE-IG-VEDSIGIFKKSS----------------KPLVISGEGHR-IP-F----DGNTFDF 171 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~-~g-~~~v~gID~s~~----------------~~l~~~~da~~-LP-f----~D~SFD~ 171 (518)
...+||+|||++|..+..+++ .+ -++++.+|+++. ...++.+++.+ || + +.+.||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 456999999999999988886 22 369999998741 12245666643 22 1 2468999
Q ss_pred EEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 172 VFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 172 V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
||.-.. = .+-...+..+.+.|||||++++-
T Consensus 125 VFiDa~-K---~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 125 VFIDAD-K---RNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp EEEEST-G---GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEccc-c---cchhhHHHHHhhhccCCeEEEEc
Confidence 998653 1 12346788899999999999996
No 195
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=96.82 E-value=0.0063 Score=61.83 Aligned_cols=92 Identities=16% Similarity=0.188 Sum_probs=61.9
Q ss_pred CCCeEEEEcCCCCHhHHHHH-hcCCCcEEEEecCCCC----------------CcEE----eccC-CCCCCCCCceeEEE
Q 010086 116 QSAKSLCVETQYGQDVFALK-EIGVEDSIGIFKKSSK----------------PLVI----SGEG-HRIPFDGNTFDFVF 173 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~-~~g~~~v~gID~s~~~----------------~l~~----~~da-~~LPf~D~SFD~V~ 173 (518)
.+..+||+|||+|..+..+. .++...+++||.|+.. ..++ ..+. .+.|..++..|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 34589999999999986654 4566799999998521 1111 2332 34467789999999
Q ss_pred EcCceeecc------------CCh-------------HHHHHHHHhcccCCcEEEEEec
Q 010086 174 VGGARLEKA------------SKP-------------LDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 174 s~~~~l~~~------------~dp-------------~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
|+--+..+= +++ -.+..-+.|.|+|||.+.+.+.
T Consensus 228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 975223221 111 1234667899999999999865
No 196
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.81 E-value=0.0043 Score=68.01 Aligned_cols=93 Identities=15% Similarity=0.181 Sum_probs=64.1
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCCC---------------CcEEeccCCCCC-CCCCceeEEE--
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSSK---------------PLVISGEGHRIP-FDGNTFDFVF-- 173 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~~---------------~l~~~~da~~LP-f~D~SFD~V~-- 173 (518)
.++|.+|||++||+|.-+..+++. +.+.+++.|+++.. ..+...|+..++ ...+.||.|+
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 478999999999999988777663 23589999998521 123456776653 3346799999
Q ss_pred --EcCc-eeeccCC----------------hHHHHHHHHhcccCCcEEEEEe
Q 010086 174 --VGGA-RLEKASK----------------PLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 174 --s~~~-~l~~~~d----------------p~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
|++. .+..-++ ..+.+..+.+.|||||+++-.+
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 6542 2333111 1346788899999999987754
No 197
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.73 E-value=0.0059 Score=64.08 Aligned_cols=89 Identities=13% Similarity=0.128 Sum_probs=64.7
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCC------CcE--EeccCCCCCCCCCceeEEEEcCceeeccC
Q 010086 112 GYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSK------PLV--ISGEGHRIPFDGNTFDFVFVGGARLEKAS 183 (518)
Q Consensus 112 gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~------~l~--~~~da~~LPf~D~SFD~V~s~~~~l~~~~ 183 (518)
..+.+|.++|||||++|..+..|.+.| ..|++||..+-. +.+ .++++-...-+.+.+|.++|-.+ .
T Consensus 207 ~~~~~g~~vlDLGAsPGGWT~~L~~rG-~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-----e 280 (357)
T PRK11760 207 ERLAPGMRAVDLGAAPGGWTYQLVRRG-MFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV-----E 280 (357)
T ss_pred cccCCCCEEEEeCCCCcHHHHHHHHcC-CEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc-----c
Confidence 456889999999999999999999988 599999976422 222 34444333112678999999653 4
Q ss_pred ChHHHHHHHHhcccCCc--EEEEEe
Q 010086 184 KPLDFASEIVRTLKPEG--FAVVHV 206 (518)
Q Consensus 184 dp~~~l~Ei~RVLKPGG--~lvi~~ 206 (518)
.|.+.++-|.+-|..|= .+++.+
T Consensus 281 ~P~rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 281 KPARVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred CHHHHHHHHHHHHhcCcccEEEEEE
Confidence 69999988999888772 345543
No 198
>PLN02823 spermine synthase
Probab=96.61 E-value=0.0074 Score=63.47 Aligned_cols=90 Identities=12% Similarity=0.117 Sum_probs=62.0
Q ss_pred CCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC---------C--------C--cEEeccCCC-CCCCCCceeEEEE
Q 010086 116 QSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS---------K--------P--LVISGEGHR-IPFDGNTFDFVFV 174 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~---------~--------~--l~~~~da~~-LPf~D~SFD~V~s 174 (518)
...+||.||+|.|..+..+.+ .+..+++.+|+++. + + .++.+|+.+ |.-.+++||+|+.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 446899999999998876655 34578999998741 0 1 134566544 2445689999998
Q ss_pred cCceeeccC-C------hHHHHH-HHHhcccCCcEEEEEec
Q 010086 175 GGARLEKAS-K------PLDFAS-EIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 175 ~~~~l~~~~-d------p~~~l~-Ei~RVLKPGG~lvi~~~ 207 (518)
-. .+... . -..+++ .+.|.|+|||+++++..
T Consensus 183 D~--~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 183 DL--ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred cC--CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 63 23210 1 235777 89999999999988754
No 199
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.57 E-value=0.0026 Score=62.29 Aligned_cols=99 Identities=20% Similarity=0.218 Sum_probs=52.1
Q ss_pred HHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHH-hcCCCcEEEEecCCCC------------------------CcEEec
Q 010086 103 SVFQDLISEGYLSQSAKSLCVETQYGQDVFALK-EIGVEDSIGIFKKSSK------------------------PLVISG 157 (518)
Q Consensus 103 ~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~-~~g~~~v~gID~s~~~------------------------~l~~~~ 157 (518)
..+.+++++.-+.+++..+|||||.|..+...+ ..++..++||++.+.. ..+.++
T Consensus 29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 344444444457889999999999999875443 4567789999986410 011234
Q ss_pred cCCCCCCCC---CceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEE
Q 010086 158 EGHRIPFDG---NTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAV 203 (518)
Q Consensus 158 da~~LPf~D---~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lv 203 (518)
|..+.++.+ ..-|+|++++..|+ ++....+.++..-||||-+++
T Consensus 109 dfl~~~~~~~~~s~AdvVf~Nn~~F~--~~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 109 DFLDPDFVKDIWSDADVVFVNNTCFD--PDLNLALAELLLELKPGARII 155 (205)
T ss_dssp -TTTHHHHHHHGHC-SEEEE--TTT---HHHHHHHHHHHTTS-TT-EEE
T ss_pred CccccHhHhhhhcCCCEEEEeccccC--HHHHHHHHHHHhcCCCCCEEE
Confidence 433322211 33589999874243 123456788889999987765
No 200
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.46 E-value=0.0039 Score=59.94 Aligned_cols=109 Identities=18% Similarity=0.268 Sum_probs=66.6
Q ss_pred CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCC-CCC---CCCCceeEEEEc
Q 010086 116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGH-RIP---FDGNTFDFVFVG 175 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~-~LP---f~D~SFD~V~s~ 175 (518)
+|.++||+-||||.+.......|...|+.||.++. ...++.+|+. .++ -.+..||+||.-
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 68899999999999885555568789999998741 1123445532 222 257899999986
Q ss_pred CceeeccCC-hHHHHHHHH--hcccCCcEEEEEecCCCccCchhHhhhccCccEEEEec
Q 010086 176 GARLEKASK-PLDFASEIV--RTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRD 231 (518)
Q Consensus 176 ~~~l~~~~d-p~~~l~Ei~--RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~ 231 (518)
-= +.. .. -.+.+..+. ..|+++|++++....+.. +...+.++++++.++
T Consensus 122 PP-Y~~-~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~~~-----~~~~~~~~~~~~~r~ 173 (183)
T PF03602_consen 122 PP-YAK-GLYYEELLELLAENNLLNEDGLIIIEHSKKED-----LPESPGNWELIKERK 173 (183)
T ss_dssp -S-TTS-CHHHHHHHHHHHHTTSEEEEEEEEEEEETTSS-----S-SEETTEEEEEEEE
T ss_pred CC-ccc-chHHHHHHHHHHHCCCCCCCEEEEEEecCCCC-----CccCCCCEEEEEEec
Confidence 41 111 11 145566665 799999999998765522 222346677777777
No 201
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.33 E-value=0.0025 Score=61.46 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC
Q 010086 100 FYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS 149 (518)
Q Consensus 100 ~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~ 149 (518)
....++......|.+ .|..|+|+|||||.++...+-+|...|+|+|+.+
T Consensus 30 ~Aa~il~~a~~~g~l-~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~ 78 (198)
T COG2263 30 LAAYILWVAYLRGDL-EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDP 78 (198)
T ss_pred HHHHHHHHHHHcCCc-CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCH
Confidence 333444333334444 5678999999999999888878988999999974
No 202
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.27 E-value=0.051 Score=51.76 Aligned_cols=92 Identities=20% Similarity=0.176 Sum_probs=67.6
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcCC--CcEEEEecCCC---------C-CcEEeccCCCCC-----CCCCceeEEEEcC
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIGV--EDSIGIFKKSS---------K-PLVISGEGHRIP-----FDGNTFDFVFVGG 176 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g~--~~v~gID~s~~---------~-~l~~~~da~~LP-----f~D~SFD~V~s~~ 176 (518)
...|.-||++|.|||-.+.++-+.|. .++++|+.++. + ..++.||+..|. +++.-||.|+|..
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~l 125 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGL 125 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecc
Confidence 34566899999999999988877764 57899998741 2 225677777664 7899999999976
Q ss_pred ceeeccCCh--HHHHHHHHhcccCCcEEEEEe
Q 010086 177 ARLEKASKP--LDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 177 ~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
= +-+++-. -+.+++..--|++||.++-..
T Consensus 126 P-ll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 126 P-LLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred c-cccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 4 4444321 256788888999999876654
No 203
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.21 E-value=0.011 Score=57.80 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=55.7
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcC
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGG 176 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~ 176 (518)
++++..|||+-||-|.++..+++. ....|+++|+++. .....++|+..++- ++.||-|++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence 678999999999999999877762 2468999999852 12246889888755 89999999865
Q ss_pred ceeeccCChHHHHHHHHhcccCCcEEE
Q 010086 177 ARLEKASKPLDFASEIVRTLKPEGFAV 203 (518)
Q Consensus 177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lv 203 (518)
.+. -..++.++.+.+|+||++-
T Consensus 178 --p~~---~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 --PES---SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp --TSS---GGGGHHHHHHHEEEEEEEE
T ss_pred --hHH---HHHHHHHHHHHhcCCcEEE
Confidence 222 2367899999999999864
No 204
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.16 E-value=0.01 Score=58.39 Aligned_cols=90 Identities=21% Similarity=0.217 Sum_probs=62.8
Q ss_pred CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------CCcE--EeccCC-CC-CCCCCceeEEEEcCce
Q 010086 115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------KPLV--ISGEGH-RI-PFDGNTFDFVFVGGAR 178 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------~~l~--~~~da~-~L-Pf~D~SFD~V~s~~~~ 178 (518)
.+|++||.||-|-|.....+++....+-+-|+..+. ...+ +.|.=+ .+ -++|++||.|+---.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy- 178 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY- 178 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeech-
Confidence 688999999999999888887765445555665431 0111 222111 12 267999999997542
Q ss_pred eeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 179 LEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 179 l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
-++.+|...+.+.+.|.|||||++-.-
T Consensus 179 ~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 179 SELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 277777888899999999999998664
No 205
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.15 E-value=0.016 Score=58.79 Aligned_cols=72 Identities=17% Similarity=0.127 Sum_probs=56.9
Q ss_pred HHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------------CCcEEeccCCCCCCCCC-ce
Q 010086 104 VFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------------KPLVISGEGHRIPFDGN-TF 169 (518)
Q Consensus 104 l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------------~~l~~~~da~~LPf~D~-SF 169 (518)
+++..++..-+.+++.||+||+|.|.++..|.+.+ ..|++|++.+. .-.++.+|+...+|++. .+
T Consensus 18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~ 96 (259)
T COG0030 18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA-ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQP 96 (259)
T ss_pred HHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc-CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCC
Confidence 35555555556779999999999999999999887 68999998741 12357899999999876 68
Q ss_pred eEEEEcC
Q 010086 170 DFVFVGG 176 (518)
Q Consensus 170 D~V~s~~ 176 (518)
+.|+++.
T Consensus 97 ~~vVaNl 103 (259)
T COG0030 97 YKVVANL 103 (259)
T ss_pred CEEEEcC
Confidence 8999875
No 206
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.15 E-value=0.068 Score=55.90 Aligned_cols=110 Identities=10% Similarity=0.096 Sum_probs=70.7
Q ss_pred HHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHH----HHhcC-CCcEEEEecCC--------------CCCcE--
Q 010086 96 KAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFA----LKEIG-VEDSIGIFKKS--------------SKPLV-- 154 (518)
Q Consensus 96 ~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~----L~~~g-~~~v~gID~s~--------------~~~l~-- 154 (518)
...+.+..-..++.+ .+.++..++|+|||+|.-+.. |.+.+ ....++||+|. +|.+.
T Consensus 58 ~E~~iL~~~~~~Ia~--~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~ 135 (319)
T TIGR03439 58 DEIEILKKHSSDIAA--SIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCA 135 (319)
T ss_pred HHHHHHHHHHHHHHH--hcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEE
Confidence 344445544444443 256778999999999986543 33222 35789999983 12222
Q ss_pred -EeccCCC----CC--CCCCceeEEEEcCceeeccCChH--HHHHHHHh-cccCCcEEEEEec
Q 010086 155 -ISGEGHR----IP--FDGNTFDFVFVGGARLEKASKPL--DFASEIVR-TLKPEGFAVVHVR 207 (518)
Q Consensus 155 -~~~da~~----LP--f~D~SFD~V~s~~~~l~~~~dp~--~~l~Ei~R-VLKPGG~lvi~~~ 207 (518)
+.||-.. +| -..+...+++..++++.+++.++ .+++++.+ .|+|||.+++.+.
T Consensus 136 ~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 136 GLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred EEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 2444322 22 12245678887775588887554 57899999 9999999999764
No 207
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=96.14 E-value=0.012 Score=59.21 Aligned_cols=86 Identities=15% Similarity=0.215 Sum_probs=58.9
Q ss_pred CCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC----------------CCcEEeccCCC-CC-C-----CCCcee
Q 010086 116 QSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS----------------KPLVISGEGHR-IP-F-----DGNTFD 170 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~----------------~~l~~~~da~~-LP-f-----~D~SFD 170 (518)
+..+||+||+++|..+..+++. + -++++.+|.++. ...++.|++.+ || + .+++||
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 4569999999999988877752 2 358999998741 11234565543 22 1 136999
Q ss_pred EEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 171 FVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 171 ~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
+||.-.. . .+-...+..+.+.|+|||++++-
T Consensus 159 ~iFiDad---K-~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 159 FIFVDAD---K-DNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred EEEecCC---H-HHhHHHHHHHHHhcCCCeEEEEc
Confidence 9998652 1 11235677888999999998874
No 208
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.13 E-value=0.0022 Score=62.74 Aligned_cols=87 Identities=15% Similarity=0.174 Sum_probs=61.1
Q ss_pred CCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------CCcEEeccCCCCCCCCCceeEEEEcCceeeccCChHHHH
Q 010086 117 SAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFA 189 (518)
Q Consensus 117 ~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~dp~~~l 189 (518)
..++||+|+|.|..+..++.. +.+|++.++|.. ..--+.+..+ ---.|-.||+|.|.+. |+...+|.+.+
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk~ynVl~~~e-w~~t~~k~dli~clNl-LDRc~~p~kLL 189 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKKNYNVLTEIE-WLQTDVKLDLILCLNL-LDRCFDPFKLL 189 (288)
T ss_pred CeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhcCCceeeehh-hhhcCceeehHHHHHH-HHhhcChHHHH
Confidence 368999999999998777632 456777776531 0000111111 0112456999999997 89889999999
Q ss_pred HHHHhcccC-CcEEEEEe
Q 010086 190 SEIVRTLKP-EGFAVVHV 206 (518)
Q Consensus 190 ~Ei~RVLKP-GG~lvi~~ 206 (518)
+.|+-||.| .|.+++..
T Consensus 190 ~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 190 EDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHHHHhccCCCcEEEEE
Confidence 999999999 88877764
No 209
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.13 E-value=0.011 Score=61.41 Aligned_cols=89 Identities=18% Similarity=0.110 Sum_probs=64.4
Q ss_pred CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCCCCceeEEEEcCceee
Q 010086 116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFDGNTFDFVFVGGARLE 180 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~ 180 (518)
.+.-|||||||+|.++...++.|..+|++|+-|+- ...++.|..+++.+|. ..|+++|-- +-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPE-k~DviISEP--MG 253 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPE-KVDVIISEP--MG 253 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCch-hccEEEecc--ch
Confidence 35678999999999987777889889999998741 1235678888888874 599999865 22
Q ss_pred ccCChHH---HHHHHHhcccCCcEEEEEec
Q 010086 181 KASKPLD---FASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 181 ~~~dp~~---~l~Ei~RVLKPGG~lvi~~~ 207 (518)
.+..-++ ..-...|-|||.|..+=+++
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfPT~g 283 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFPTVG 283 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccCccc
Confidence 3322233 33456799999998766553
No 210
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.12 E-value=0.059 Score=53.48 Aligned_cols=121 Identities=17% Similarity=0.216 Sum_probs=73.6
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCCC-----------CcE--EeccCCCC----CCCCCceeEEE
Q 010086 113 YLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSSK-----------PLV--ISGEGHRI----PFDGNTFDFVF 173 (518)
Q Consensus 113 ll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~~-----------~l~--~~~da~~L----Pf~D~SFD~V~ 173 (518)
.+++|++||.+|+.+|..+..+.+. | .+.|++++.|+.+ +.+ +.+|+..- ++ =+.+|+|+
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~l-v~~VDvI~ 148 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRML-VEMVDVIF 148 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTT-S--EEEEE
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcc-cccccEEE
Confidence 4789999999999999998888773 4 4689999998521 222 45666531 23 34899999
Q ss_pred EcCceeeccCChHH-HHHHHHhcccCCcEEEEEecCC--Ccc-C-----chhHhhhc-cCccEEEEeccCCCCCC
Q 010086 174 VGGARLEKASKPLD-FASEIVRTLKPEGFAVVHVRAK--DEY-S-----FNSFLDLF-NSCKLVKSRDIDGIDSS 238 (518)
Q Consensus 174 s~~~~l~~~~dp~~-~l~Ei~RVLKPGG~lvi~~~~~--~~~-s-----~~~~~~lf-~~~~~v~~~~v~~~~~~ 238 (518)
+--+ + ++..+ ++.-+..-||+||.+++.+-+. |.. + .....+|= .+|+++..-..++|+-.
T Consensus 149 ~DVa---Q-p~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~~d 219 (229)
T PF01269_consen 149 QDVA---Q-PDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYERD 219 (229)
T ss_dssp EE-S---S-TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTSTT
T ss_pred ecCC---C-hHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCCCCC
Confidence 8542 2 23333 5566778999999999887332 110 0 01233442 25788887777777754
No 211
>PRK00536 speE spermidine synthase; Provisional
Probab=96.07 E-value=0.03 Score=57.00 Aligned_cols=85 Identities=11% Similarity=0.035 Sum_probs=59.1
Q ss_pred CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------C--------CcE-EeccCCCCCCCCCceeEEEEcC
Q 010086 115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------K--------PLV-ISGEGHRIPFDGNTFDFVFVGG 176 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------~--------~l~-~~~da~~LPf~D~SFD~V~s~~ 176 (518)
+...+||-||.|.|..++.+.+.. .+|+-+|+.+. | |-+ +..... .-..++||+|+.-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~--~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLL--DLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhh--hccCCcCCEEEEcC
Confidence 345799999999999987776654 48999998631 1 111 111111 01237899999864
Q ss_pred ceeeccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086 177 ARLEKASKPLDFASEIVRTLKPEGFAVVHVRA 208 (518)
Q Consensus 177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~ 208 (518)
. ++..+++.+.|.|+|||+++.+.+.
T Consensus 148 ~------~~~~fy~~~~~~L~~~Gi~v~Qs~s 173 (262)
T PRK00536 148 E------PDIHKIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_pred C------CChHHHHHHHHhcCCCcEEEECCCC
Confidence 2 3567889999999999999998653
No 212
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.04 E-value=0.028 Score=59.41 Aligned_cols=111 Identities=12% Similarity=0.037 Sum_probs=67.2
Q ss_pred CeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCC-C-------C---C-----C
Q 010086 118 AKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRI-P-------F---D-----G 166 (518)
Q Consensus 118 ~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~L-P-------f---~-----D 166 (518)
.++||++||+|.++..|++.. ..|+|+|+++. ...++.+|+.+. + + . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 479999999999999888654 69999998741 112456665542 1 1 0 1
Q ss_pred CceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEEeccCCCCC
Q 010086 167 NTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDS 237 (518)
Q Consensus 167 ~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~v~~~~~ 237 (518)
..||+|+.--- . .--...++ ..+++|++++++....... ...+..|...|++.++.-+|.|=.
T Consensus 278 ~~~d~v~lDPP--R-~G~~~~~l---~~l~~~~~ivYvsC~p~tl--aRDl~~L~~~Y~l~~v~~~DmFP~ 340 (353)
T TIGR02143 278 YNCSTIFVDPP--R-AGLDPDTC---KLVQAYERILYISCNPETL--KANLEQLSETHRVERFALFDQFPY 340 (353)
T ss_pred CCCCEEEECCC--C-CCCcHHHH---HHHHcCCcEEEEEcCHHHH--HHHHHHHhcCcEEEEEEEcccCCC
Confidence 13788776320 0 00001233 3445689999987643211 133444445599999999998544
No 213
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.03 E-value=0.023 Score=57.86 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------C---C-cEEeccCCCCCCC
Q 010086 102 SSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------K---P-LVISGEGHRIPFD 165 (518)
Q Consensus 102 ~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------~---~-l~~~~da~~LPf~ 165 (518)
+.+.+.+++..-+++++.||+||.|||.++..|-+.| .+|+++++.+. + . .++.||....++|
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~-kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P 122 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAG-KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP 122 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhc-CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence 4566666777789999999999999999999998888 89999998742 1 1 1346676555433
Q ss_pred CCceeEEEEcC
Q 010086 166 GNTFDFVFVGG 176 (518)
Q Consensus 166 D~SFD~V~s~~ 176 (518)
.||.++++.
T Consensus 123 --~fd~cVsNl 131 (315)
T KOG0820|consen 123 --RFDGCVSNL 131 (315)
T ss_pred --ccceeeccC
Confidence 578877754
No 214
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.86 E-value=0.056 Score=54.07 Aligned_cols=110 Identities=15% Similarity=0.095 Sum_probs=77.5
Q ss_pred hhhccCChhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------CCcEE-
Q 010086 85 RRDMYTSKEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------KPLVI- 155 (518)
Q Consensus 85 ~~~~w~s~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------~~l~~- 155 (518)
.+..|-|+...|-...+. .-.+..++..+||||+.||.++.-+-+.|...|+|||.... .+-++
T Consensus 55 ~~~~yVSRG~~KL~~ale-------~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~ 127 (245)
T COG1189 55 EEQPYVSRGGLKLEKALE-------EFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIV 127 (245)
T ss_pred cCcCccccHHHHHHHHHH-------hcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEE
Confidence 457788876666322222 22355678899999999999999888899899999998642 12222
Q ss_pred --eccCCCCC---CCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086 156 --SGEGHRIP---FDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 156 --~~da~~LP---f~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
+-+++.+- |.. -.|+++|--+ |-. ....+..+..+|+|+|.++..+
T Consensus 128 ~E~tN~r~l~~~~~~~-~~d~~v~DvS-FIS---L~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 128 LERTNVRYLTPEDFTE-KPDLIVIDVS-FIS---LKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred EecCChhhCCHHHccc-CCCeEEEEee-hhh---HHHHHHHHHHhcCCCceEEEEe
Confidence 34555441 333 6789998654 543 4577899999999999988877
No 215
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=95.85 E-value=0.04 Score=58.47 Aligned_cols=112 Identities=12% Similarity=0.058 Sum_probs=68.3
Q ss_pred CCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCC-C-CC--------------
Q 010086 117 SAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRI-P-FD-------------- 165 (518)
Q Consensus 117 ~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~L-P-f~-------------- 165 (518)
+.++||++||+|.++..+++. ...|+|||.++. ...++.+|+.+. + +.
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence 357999999999999988865 468999998741 112455665442 1 10
Q ss_pred CCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEEeccCCCCC
Q 010086 166 GNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDS 237 (518)
Q Consensus 166 D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~v~~~~~ 237 (518)
...||+|+.--= . .--..+++ ..+.+|++++++....... ...+..|...|++.++.-+|.|=.
T Consensus 286 ~~~~D~v~lDPP--R-~G~~~~~l---~~l~~~~~ivyvSC~p~tl--arDl~~L~~gY~l~~v~~~DmFPq 349 (362)
T PRK05031 286 SYNFSTIFVDPP--R-AGLDDETL---KLVQAYERILYISCNPETL--CENLETLSQTHKVERFALFDQFPY 349 (362)
T ss_pred CCCCCEEEECCC--C-CCCcHHHH---HHHHccCCEEEEEeCHHHH--HHHHHHHcCCcEEEEEEEcccCCC
Confidence 225899887431 0 00011233 3344588888887653211 123333435799999999988544
No 216
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=95.82 E-value=0.017 Score=58.47 Aligned_cols=95 Identities=20% Similarity=0.141 Sum_probs=58.4
Q ss_pred HHcCCCCCCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC------------------------------CC-----
Q 010086 109 ISEGYLSQSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS------------------------------KP----- 152 (518)
Q Consensus 109 ~~~gll~~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~------------------------------~~----- 152 (518)
...|.+ +|.++||||||+-.. ..|.- .-+.+++..|.++. ..
T Consensus 50 f~~g~~-~g~~llDiGsGPtiy-~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~ 127 (256)
T PF01234_consen 50 FSSGGV-KGETLLDIGSGPTIY-QLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEK 127 (256)
T ss_dssp HHTSSS--EEEEEEES-TT--G-GGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHH
T ss_pred hCccCc-CCCEEEEeCCCcHHH-hhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhH
Confidence 344433 578999999998433 22221 23468888887520 00
Q ss_pred ---------cEEeccCCCC-CCCC-----CceeEEEEcCceeeccC-ChH---HHHHHHHhcccCCcEEEEEe
Q 010086 153 ---------LVISGEGHRI-PFDG-----NTFDFVFVGGARLEKAS-KPL---DFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 153 ---------l~~~~da~~L-Pf~D-----~SFD~V~s~~~~l~~~~-dp~---~~l~Ei~RVLKPGG~lvi~~ 206 (518)
.++..|.++. |++. ..||.|+|... ++-+. +++ ++++-+.+.|||||.+++..
T Consensus 128 e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fc-LE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 128 EEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFC-LESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp HHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESS-HHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHH-HHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 0245677665 4544 25999999886 76654 444 67899999999999998874
No 217
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=95.68 E-value=0.098 Score=50.63 Aligned_cols=114 Identities=17% Similarity=0.124 Sum_probs=71.8
Q ss_pred CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC----------------CCcEEeccCCCC-CCCCC--ceeEEEEcC
Q 010086 116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS----------------KPLVISGEGHRI-PFDGN--TFDFVFVGG 176 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~----------------~~l~~~~da~~L-Pf~D~--SFD~V~s~~ 176 (518)
.|.++||+=+|+|.+.......|...++.||.+.. ...++.+|+... +-... .||+||.--
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 68899999999999874444467789999998731 112345555532 22223 499999865
Q ss_pred ceee-ccCChHHHHHH--HHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEEeccCCCCCC
Q 010086 177 ARLE-KASKPLDFASE--IVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSS 238 (518)
Q Consensus 177 ~~l~-~~~dp~~~l~E--i~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~v~~~~~~ 238 (518)
= ++ .+.++...+.. -...|+|||.+++...... .+..+..++++++.+. |+.+
T Consensus 123 P-y~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~~-----~~~~~~~~~~~~r~k~---yG~t 178 (187)
T COG0742 123 P-YAKGLLDKELALLLLEENGWLKPGALIVVEHDKDV-----ELPELPANFELHREKK---YGQT 178 (187)
T ss_pred C-CccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCCc-----CccccCCCeEEEEEee---cCCE
Confidence 3 33 12223333333 5678999999999875432 2223356777777666 5543
No 218
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=95.39 E-value=0.015 Score=60.73 Aligned_cols=61 Identities=10% Similarity=-0.017 Sum_probs=39.5
Q ss_pred CCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCC------------CCCc-----E-EeccCCCCC----CCCCceeEE
Q 010086 116 QSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKS------------SKPL-----V-ISGEGHRIP----FDGNTFDFV 172 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~------------~~~l-----~-~~~da~~LP----f~D~SFD~V 172 (518)
++.++||||||+|.....|.. ....+++|+|+++ .+.+ + .+.+...+. .+++.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999987766543 2225899999974 1111 1 123322221 357799999
Q ss_pred EEcC
Q 010086 173 FVGG 176 (518)
Q Consensus 173 ~s~~ 176 (518)
+|+-
T Consensus 194 vcNP 197 (321)
T PRK11727 194 LCNP 197 (321)
T ss_pred EeCC
Confidence 9986
No 219
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=95.39 E-value=0.068 Score=54.56 Aligned_cols=81 Identities=14% Similarity=0.127 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCCC------------CcE---Eec--cCCC
Q 010086 101 YSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSSK------------PLV---ISG--EGHR 161 (518)
Q Consensus 101 ~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~~------------~l~---~~~--da~~ 161 (518)
+..+|.++.....--...+|||+|+|+|..+-+..+. ...+++.+|.|+.. ... ... -...
T Consensus 18 ~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 97 (274)
T PF09243_consen 18 VYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDF 97 (274)
T ss_pred HHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccc
Confidence 3456666665432223468999999999987665542 35689999987421 000 000 1112
Q ss_pred CCCCCCceeEEEEcCceeeccCC
Q 010086 162 IPFDGNTFDFVFVGGARLEKASK 184 (518)
Q Consensus 162 LPf~D~SFD~V~s~~~~l~~~~d 184 (518)
+++... |+|+++++ |..+++
T Consensus 98 ~~~~~~--DLvi~s~~-L~EL~~ 117 (274)
T PF09243_consen 98 LPFPPD--DLVIASYV-LNELPS 117 (274)
T ss_pred ccCCCC--cEEEEehh-hhcCCc
Confidence 344333 99999998 888876
No 220
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=95.35 E-value=0.041 Score=55.31 Aligned_cols=91 Identities=19% Similarity=0.240 Sum_probs=60.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC------------------C-CcEEeccCCCC-CCCCC-ceeEE
Q 010086 115 SQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS------------------K-PLVISGEGHRI-PFDGN-TFDFV 172 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~------------------~-~l~~~~da~~L-Pf~D~-SFD~V 172 (518)
+...+||-||.|.|..+..+.+.. ..+++.+|+++. + ..++.+|+... --..+ .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 357899999999999998887654 578999998731 1 12345555331 11223 89999
Q ss_pred EEcCceeecc-C----ChHHHHHHHHhcccCCcEEEEEec
Q 010086 173 FVGGARLEKA-S----KPLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 173 ~s~~~~l~~~-~----dp~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
+.-. .+-. + .-..+++.+.|.|+|||++++...
T Consensus 155 i~D~--~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 155 IVDL--TDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEES--SSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeC--CCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 9854 2311 1 124789999999999999999863
No 221
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.34 E-value=0.02 Score=54.07 Aligned_cols=113 Identities=19% Similarity=0.209 Sum_probs=68.4
Q ss_pred CCeEEEEcCCCCHh-HHHHHhcCCCcEEEEecCCCCC--cE--EeccCCCCCC------CCCceeEEEEcCceeecc---
Q 010086 117 SAKSLCVETQYGQD-VFALKEIGVEDSIGIFKKSSKP--LV--ISGEGHRIPF------DGNTFDFVFVGGARLEKA--- 182 (518)
Q Consensus 117 ~~rvLDVGcGtG~~-~~~L~~~g~~~v~gID~s~~~~--l~--~~~da~~LPf------~D~SFD~V~s~~~~l~~~--- 182 (518)
+.+.+-+|...-.. +.+|+ .|..++..|+.++-.. .+ .........| -.++||++.|.++ ++|+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~-~GA~~iltveyn~L~i~~~~~dr~ssi~p~df~~~~~~y~~~fD~~as~~s-iEh~GLG 79 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQ-HGAAKILTVEYNKLEIQEEFRDRLSSILPVDFAKNWQKYAGSFDFAASFSS-IEHFGLG 79 (177)
T ss_pred CceEEEEecCCchhhHHHHH-cCCceEEEEeecccccCcccccccccccHHHHHHHHHHhhccchhhheech-hcccccc
Confidence 45677787775332 23333 4666788888643110 00 0000000011 2568999999997 8887
Q ss_pred -----CCh---HHHHHHHHhcccCCcEEEEEecCC-Cc--------cCchhHhhhccCccEEEEec
Q 010086 183 -----SKP---LDFASEIVRTLKPEGFAVVHVRAK-DE--------YSFNSFLDLFNSCKLVKSRD 231 (518)
Q Consensus 183 -----~dp---~~~l~Ei~RVLKPGG~lvi~~~~~-~~--------~s~~~~~~lf~~~~~v~~~~ 231 (518)
.|| .+++.++.|+|||||.+++.+.-+ |. |+...+..+|..++.+....
T Consensus 80 RYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~i~tfs 145 (177)
T PF03269_consen 80 RYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEWIDTFS 145 (177)
T ss_pred ccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEEEeeec
Confidence 234 368899999999999998875322 22 44445566688888877654
No 222
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.30 E-value=0.14 Score=50.98 Aligned_cols=86 Identities=20% Similarity=0.298 Sum_probs=58.1
Q ss_pred CCCeEEEEcCCCCHhHHHHHh-c-CCCcEEEEecCCCC----------------CcEEeccCCC-C-----CCCCCceeE
Q 010086 116 QSAKSLCVETQYGQDVFALKE-I-GVEDSIGIFKKSSK----------------PLVISGEGHR-I-----PFDGNTFDF 171 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~-~-g~~~v~gID~s~~~----------------~l~~~~da~~-L-----Pf~D~SFD~ 171 (518)
...++||||.=||..+.+++. + .-++|+++|+.+.. ..++++.+.+ | -.+.++|||
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 567999999999987766554 1 13699999997421 1233443321 1 135789999
Q ss_pred EEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 172 VFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 172 V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
||.-.- -.+-...+.+..|.||+||++++-
T Consensus 153 aFvDad----K~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 153 AFVDAD----KDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEEccc----hHHHHHHHHHHHhhcccccEEEEe
Confidence 997431 112236789999999999999884
No 223
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=95.09 E-value=0.056 Score=58.02 Aligned_cols=96 Identities=15% Similarity=0.173 Sum_probs=66.4
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------------CCcEEeccCCCC-CC---CCCcee
Q 010086 112 GYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------------KPLVISGEGHRI-PF---DGNTFD 170 (518)
Q Consensus 112 gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------------~~l~~~~da~~L-Pf---~D~SFD 170 (518)
++++ |.+|||+=|=||.++...+.-|..+||+||+|.. +..++++|+-+. .- ....||
T Consensus 214 ~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fD 292 (393)
T COG1092 214 ELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFD 292 (393)
T ss_pred hhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCccc
Confidence 3445 9999999999999997777778669999999841 123456665332 11 245999
Q ss_pred EEEEcCceeeccC--------ChHHHHHHHHhcccCCcEEEEEecC
Q 010086 171 FVFVGGARLEKAS--------KPLDFASEIVRTLKPEGFAVVHVRA 208 (518)
Q Consensus 171 ~V~s~~~~l~~~~--------dp~~~l~Ei~RVLKPGG~lvi~~~~ 208 (518)
+|+.--=+|-.-+ +-.+.+.+..++|+|||++++.+.+
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 9996431132211 1235678999999999999987643
No 224
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.97 E-value=0.021 Score=53.11 Aligned_cols=61 Identities=13% Similarity=0.107 Sum_probs=48.8
Q ss_pred CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcC
Q 010086 116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGG 176 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~ 176 (518)
.|.+++|+|||.|.+..+..-.+...|+|+|+.+. ...+++++...+-+..+.||.++.+.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecC
Confidence 57899999999999887776666678999999741 12356888888888889999998865
No 225
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=94.95 E-value=0.083 Score=48.28 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=40.8
Q ss_pred HHHhhHHHHHHHHHHc-CCCCCCCeEEEEcCCCCHhHHHHHh-----cCCCcEEEEecCC
Q 010086 96 KAVNFYSSVFQDLISE-GYLSQSAKSLCVETQYGQDVFALKE-----IGVEDSIGIFKKS 149 (518)
Q Consensus 96 ~~v~~~~~l~~~L~~~-gll~~~~rvLDVGcGtG~~~~~L~~-----~g~~~v~gID~s~ 149 (518)
..++.+..+++.+.+. +...+...|+|+|||.|.++..|+. ....+|+|||.++
T Consensus 4 ~Ei~~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~ 63 (141)
T PF13679_consen 4 HEIERMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNE 63 (141)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCc
Confidence 3566666777776654 4446678999999999999988876 3346999999875
No 226
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.91 E-value=0.1 Score=54.92 Aligned_cols=85 Identities=14% Similarity=0.134 Sum_probs=57.6
Q ss_pred CCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEec-cCCCCCCCCCceeEEEEcCcee
Q 010086 112 GYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISG-EGHRIPFDGNTFDFVFVGGARL 179 (518)
Q Consensus 112 gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~-da~~LPf~D~SFD~V~s~~~~l 179 (518)
..++||.+|+-+|+|. |..+..+++ .| .+|+++|.++.. ..++.+ +...++--.+.||+|+..-.
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-- 238 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-- 238 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC--
Confidence 3478999999999993 444555555 78 899999998641 122332 22222211224999998652
Q ss_pred eccCChHHHHHHHHhcccCCcEEEEE
Q 010086 180 EKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
...+....+.||+||.+++.
T Consensus 239 ------~~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 239 ------PATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred ------hhhHHHHHHHHhcCCEEEEE
Confidence 34678899999999999886
No 227
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=94.79 E-value=0.087 Score=51.35 Aligned_cols=94 Identities=15% Similarity=0.113 Sum_probs=58.5
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC------C----------C-----cEEeccCCCCCCCCCce
Q 010086 113 YLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS------K----------P-----LVISGEGHRIPFDGNTF 169 (518)
Q Consensus 113 ll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~------~----------~-----l~~~~da~~LPf~D~SF 169 (518)
.++++++|+|+=.|.|..+..|... | -+.|++.-..+. . + .++-...-.++ +-+..
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~ 123 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKL 123 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcc
Confidence 4799999999999999999888752 3 235666543321 0 0 01112233344 45556
Q ss_pred eEEEEcCc-e-----eeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086 170 DFVFVGGA-R-----LEKASKPLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 170 D~V~s~~~-~-----l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
|+++..+. + +-|-....++.+++++.|||||++.+.--
T Consensus 124 d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 124 DLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred cccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 66665332 0 11222346889999999999999988753
No 228
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=94.76 E-value=0.12 Score=52.99 Aligned_cols=137 Identities=16% Similarity=0.141 Sum_probs=72.2
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHh--------cCCCcEEEEecCCCC---------------C--cEEeccCCCCCC-C-C
Q 010086 114 LSQSAKSLCVETQYGQDVFALKE--------IGVEDSIGIFKKSSK---------------P--LVISGEGHRIPF-D-G 166 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~--------~g~~~v~gID~s~~~---------------~--l~~~~da~~LPf-~-D 166 (518)
..++.+|||-+||+|.+..++.+ .....++|+|+++.. . .+..+|.-..+. . .
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 45677899999999998755443 234689999986421 1 134555443333 2 5
Q ss_pred CceeEEEEcCc-eee-c----c-CC------------h-HHHHHHHHhcccCCcEEEEEecCCCccC---chhHhh-hcc
Q 010086 167 NTFDFVFVGGA-RLE-K----A-SK------------P-LDFASEIVRTLKPEGFAVVHVRAKDEYS---FNSFLD-LFN 222 (518)
Q Consensus 167 ~SFD~V~s~~~-~l~-~----~-~d------------p-~~~l~Ei~RVLKPGG~lvi~~~~~~~~s---~~~~~~-lf~ 222 (518)
..||+|+++-= ... + . .+ . ..++..+.+.||+||++++.+...-.++ ...+++ |..
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~ 203 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLLE 203 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHHH
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHHHh
Confidence 89999998752 012 1 0 00 0 1477889999999999877764322111 123333 345
Q ss_pred CccEEEEeccC--CC-CCCccceeEEEEeecc
Q 010086 223 SCKLVKSRDID--GI-DSSLPYIREIVLKKES 251 (518)
Q Consensus 223 ~~~~v~~~~v~--~~-~~~~p~~~~vv~kK~~ 251 (518)
++.+..+-... .| +..+|+ ..++++|..
T Consensus 204 ~~~i~aVI~Lp~~~F~~t~v~t-~ilil~k~~ 234 (311)
T PF02384_consen 204 NGYIEAVISLPSNLFKPTGVPT-SILILNKKK 234 (311)
T ss_dssp HEEEEEEEE--TTSSSSSSS-E-EEEEEEESS
T ss_pred hchhhEEeecccceecccCcCc-eEEEEeecc
Confidence 55544433321 12 223433 357777764
No 229
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.60 E-value=0.52 Score=46.36 Aligned_cols=122 Identities=14% Similarity=0.167 Sum_probs=76.7
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCCCCC-----------c--EEeccCCCC---CCCCCceeEEEEc
Q 010086 113 YLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKSSKP-----------L--VISGEGHRI---PFDGNTFDFVFVG 175 (518)
Q Consensus 113 ll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~~~~-----------l--~~~~da~~L---Pf~D~SFD~V~s~ 175 (518)
.+++|++||=+|+.+|..+...++. |.+.++||+.|+.+. . -+.+||..- -+-=+.+|+|+.-
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D 152 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQD 152 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEe
Confidence 3689999999999999998888773 546899999986421 1 124555421 1123458888874
Q ss_pred CceeeccCChH-HHHHHHHhcccCCcEEEEEecCCC---ccCch-----hHhhh-ccCccEEEEeccCCCCCC
Q 010086 176 GARLEKASKPL-DFASEIVRTLKPEGFAVVHVRAKD---EYSFN-----SFLDL-FNSCKLVKSRDIDGIDSS 238 (518)
Q Consensus 176 ~~~l~~~~dp~-~~l~Ei~RVLKPGG~lvi~~~~~~---~~s~~-----~~~~l-f~~~~~v~~~~v~~~~~~ 238 (518)
-+ + ++.. -++.-+..-||+||.+++.+-+.. +-+.. .+.+| -..++++..-..++|+-.
T Consensus 153 VA--Q--p~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LePye~D 221 (231)
T COG1889 153 VA--Q--PNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEPYEKD 221 (231)
T ss_pred cC--C--chHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccCCcccc
Confidence 32 1 2222 356788999999998777653321 11111 22333 134578888888777754
No 230
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.52 E-value=0.4 Score=49.25 Aligned_cols=90 Identities=13% Similarity=0.141 Sum_probs=50.0
Q ss_pred CeEEEEcCCCCHhH-HHHHhc-C-CCcEEEEecCCC-----------------CCcEEeccCCCCCCCCCceeEEEEcCc
Q 010086 118 AKSLCVETQYGQDV-FALKEI-G-VEDSIGIFKKSS-----------------KPLVISGEGHRIPFDGNTFDFVFVGGA 177 (518)
Q Consensus 118 ~rvLDVGcGtG~~~-~~L~~~-g-~~~v~gID~s~~-----------------~~l~~~~da~~LPf~D~SFD~V~s~~~ 177 (518)
.||+.||+|+=-++ ..|++. + ...++++|+++. .+.++.+|+...+.+-..||+|+...-
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal 201 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL 201 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence 59999999985444 445542 3 246899998741 123556788777766679999997652
Q ss_pred eeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086 178 RLEKASKPLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
.=..-.+..+.+..+.+.++||..+++-..
T Consensus 202 Vg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 202 VGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp -S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred cccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 011112567899999999999999998753
No 231
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=94.39 E-value=0.13 Score=54.40 Aligned_cols=93 Identities=16% Similarity=0.299 Sum_probs=61.1
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcCC---CcEEEEecCCC--------------C-CcEEeccCCCCC--CCCC-ceeEE
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIGV---EDSIGIFKKSS--------------K-PLVISGEGHRIP--FDGN-TFDFV 172 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g~---~~v~gID~s~~--------------~-~l~~~~da~~LP--f~D~-SFD~V 172 (518)
.++|.+|||+.++.|.=+..+++... ..|+++|.++. . ..+...|+..+| .+.+ .||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 57899999999999988877766431 34699999852 1 123456665553 2333 59999
Q ss_pred EE----cC-ceeeccC------C----------hHHHHHHHHhcccCCcEEEEEe
Q 010086 173 FV----GG-ARLEKAS------K----------PLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 173 ~s----~~-~~l~~~~------d----------p~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
+. ++ +.++.=+ . ..+.+..+.+.|||||+++-.+
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 83 32 2232111 1 1246788999999999988764
No 232
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=94.30 E-value=0.066 Score=57.18 Aligned_cols=85 Identities=11% Similarity=0.153 Sum_probs=62.4
Q ss_pred CCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCCC---------------CcEEeccCCCCC-CCCCceeEEEEcCce
Q 010086 117 SAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSSK---------------PLVISGEGHRIP-FDGNTFDFVFVGGAR 178 (518)
Q Consensus 117 ~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~~---------------~l~~~~da~~LP-f~D~SFD~V~s~~~~ 178 (518)
+-++||+-||+|..+..+... |...|+++|+++.. ..+.++|+..+- -....||+|+.--
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 358999999999998666654 67799999998521 124456665442 1246799998744
Q ss_pred eeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086 179 LEKASKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 179 l~~~~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
+ -.|..++..+.+.+++||++.++.
T Consensus 123 f---Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 F---GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C---CCcHHHHHHHHHhcccCCEEEEEe
Confidence 3 246679999999999999999974
No 233
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=94.11 E-value=0.14 Score=51.62 Aligned_cols=70 Identities=17% Similarity=0.082 Sum_probs=50.6
Q ss_pred HHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-------------CCcEEeccCCCCCCCC---Cce
Q 010086 106 QDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-------------KPLVISGEGHRIPFDG---NTF 169 (518)
Q Consensus 106 ~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-------------~~l~~~~da~~LPf~D---~SF 169 (518)
+++++..-+.++..|||||+|+|.++..|.+.+ .+++++++++. ...++.+|+..+..++ +.-
T Consensus 20 ~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~ 98 (262)
T PF00398_consen 20 DKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQP 98 (262)
T ss_dssp HHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSE
T ss_pred HHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCCc
Confidence 333333345688999999999999999999887 89999998731 1235689999887776 455
Q ss_pred eEEEEcC
Q 010086 170 DFVFVGG 176 (518)
Q Consensus 170 D~V~s~~ 176 (518)
..|+++.
T Consensus 99 ~~vv~Nl 105 (262)
T PF00398_consen 99 LLVVGNL 105 (262)
T ss_dssp EEEEEEE
T ss_pred eEEEEEe
Confidence 6666643
No 234
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=94.06 E-value=0.5 Score=48.79 Aligned_cols=94 Identities=14% Similarity=0.121 Sum_probs=63.4
Q ss_pred CCCeEEEEcCCCCHhH-HHHHhcC--CCcEEEEecCCC--------------C--CcEEeccCCCC-CCC--CCceeEEE
Q 010086 116 QSAKSLCVETQYGQDV-FALKEIG--VEDSIGIFKKSS--------------K--PLVISGEGHRI-PFD--GNTFDFVF 173 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~-~~L~~~g--~~~v~gID~s~~--------------~--~l~~~~da~~L-Pf~--D~SFD~V~ 173 (518)
..-+||||.||.|..+ .++.+.+ ...+.-.|.++. . ..+.++|+-+- .+. +-..|+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 3469999999999987 4555544 357788887741 0 12456665332 122 34568888
Q ss_pred EcCceeeccCChH---HHHHHHHhcccCCcEEEEEe--cCCC
Q 010086 174 VGGARLEKASKPL---DFASEIVRTLKPEGFAVVHV--RAKD 210 (518)
Q Consensus 174 s~~~~l~~~~dp~---~~l~Ei~RVLKPGG~lvi~~--~~~~ 210 (518)
.++. ++.++|-+ ..++-+.+.+.|||+++.+- +|..
T Consensus 215 VsGL-~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ 255 (311)
T PF12147_consen 215 VSGL-YELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ 255 (311)
T ss_pred Eecc-hhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence 8885 77777643 46888999999999999864 5543
No 235
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=93.94 E-value=0.4 Score=50.44 Aligned_cols=84 Identities=15% Similarity=0.107 Sum_probs=57.9
Q ss_pred CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC---------C-CC-cEEeccC-CCCCCCCCceeEEEEcCceeeccC
Q 010086 116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS---------S-KP-LVISGEG-HRIPFDGNTFDFVFVGGARLEKAS 183 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~---------~-~~-l~~~~da-~~LPf~D~SFD~V~s~~~~l~~~~ 183 (518)
.-..++|+|.|.|..+..+.. .+.++-+|+... . ++ ..+-+|. .+.|=. |+|+..-. +||+.
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~----daI~mkWi-Lhdwt 250 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKG----DAIWMKWI-LHDWT 250 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCc----CeEEEEee-cccCC
Confidence 347899999999999977665 344566666431 1 11 1123332 223433 49999887 99998
Q ss_pred ChH--HHHHHHHhcccCCcEEEEE
Q 010086 184 KPL--DFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 184 dp~--~~l~Ei~RVLKPGG~lvi~ 205 (518)
|-+ ++++-+..-|+|||.+++.
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEE
Confidence 764 7899999999999998775
No 236
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=93.72 E-value=0.2 Score=52.85 Aligned_cols=87 Identities=14% Similarity=0.111 Sum_probs=69.9
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCC----------------CcEEeccCCCCCCCCCceeEEEEcCc
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSK----------------PLVISGEGHRIPFDGNTFDFVFVGGA 177 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~----------------~l~~~~da~~LPf~D~SFD~V~s~~~ 177 (518)
..+|..|||+=||-|.++..++..|...|+++|+++.. ...++||+...+..-+.||-|++..
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~- 264 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL- 264 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC-
Confidence 46799999999999999998888885569999998621 2246899999887779999999976
Q ss_pred eeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 178 RLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
.. .-.+++..+.+.+|+||++-..
T Consensus 265 -p~---~a~~fl~~A~~~~k~~g~iHyy 288 (341)
T COG2520 265 -PK---SAHEFLPLALELLKDGGIIHYY 288 (341)
T ss_pred -CC---cchhhHHHHHHHhhcCcEEEEE
Confidence 22 2346788889999999998765
No 237
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=93.66 E-value=0.39 Score=46.97 Aligned_cols=94 Identities=13% Similarity=0.063 Sum_probs=62.0
Q ss_pred CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCCCc-----------EEeccCCCCCCCCCceeEEEEcCceeeccCC
Q 010086 116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSKPL-----------VISGEGHRIPFDGNTFDFVFVGGARLEKASK 184 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~~l-----------~~~~da~~LPf~D~SFD~V~s~~~~l~~~~d 184 (518)
.|.+|||+|+|+|..+.+-++.|...|+..|+.+.... -+.-...++-+.+..||+++.....+.| +.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~-~~ 157 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH-TE 157 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc-hH
Confidence 57899999999999988877788778888887542100 0111112223478899999998862333 33
Q ss_pred hHHHHHHHHhcccCCcEEEEEecCCCc
Q 010086 185 PLDFASEIVRTLKPEGFAVVHVRAKDE 211 (518)
Q Consensus 185 p~~~l~Ei~RVLKPGG~lvi~~~~~~~ 211 (518)
-.+.+. ..+.|+-.|..++.......
T Consensus 158 a~~l~~-~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 158 ADRLIP-WKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred HHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence 345666 77888888877665444433
No 238
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=93.56 E-value=0.61 Score=45.38 Aligned_cols=98 Identities=17% Similarity=0.134 Sum_probs=62.8
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCCCC----cEEec-cCCC------C--CCCCCceeEEEEcC
Q 010086 112 GYLSQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSSKP----LVISG-EGHR------I--PFDGNTFDFVFVGG 176 (518)
Q Consensus 112 gll~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~~~----l~~~~-da~~------L--Pf~D~SFD~V~s~~ 176 (518)
++++|+++|||+||.+|..++-..+. +.+-|.|||+-+..| ..+++ |... + -.|+-.+|+|+|-.
T Consensus 65 ~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSDM 144 (232)
T KOG4589|consen 65 RFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSDM 144 (232)
T ss_pred cccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEecc
Confidence 57899999999999999988655542 346899999865322 12222 2111 0 13678999999965
Q ss_pred ceeeccC-----ChHH-------HHHHHHhcccCCcEEEEEecCCCc
Q 010086 177 ARLEKAS-----KPLD-------FASEIVRTLKPEGFAVVHVRAKDE 211 (518)
Q Consensus 177 ~~l~~~~-----dp~~-------~l~Ei~RVLKPGG~lvi~~~~~~~ 211 (518)
+ ++.. |..+ ++.-..--++|+|.++.-++.++.
T Consensus 145 a--pnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 145 A--PNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred C--CCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 3 3321 2222 223334457899999998876653
No 239
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=93.42 E-value=0.27 Score=51.99 Aligned_cols=110 Identities=18% Similarity=0.169 Sum_probs=61.2
Q ss_pred CeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCC----------------CCCC
Q 010086 118 AKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRI----------------PFDG 166 (518)
Q Consensus 118 ~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~L----------------Pf~D 166 (518)
.++||+=||.|.++..|++.. ..|+||+.++. ...++.++++++ ...+
T Consensus 198 ~~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 276 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKS 276 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGC
T ss_pred CcEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhhh
Confidence 389999999999999998764 79999998631 112344444332 1223
Q ss_pred CceeEEEEcC--ceeeccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEEeccCCCCCC
Q 010086 167 NTFDFVFVGG--ARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSS 238 (518)
Q Consensus 167 ~SFD~V~s~~--~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~v~~~~~~ 238 (518)
..+|+|+.-- +.++ ..+++.+. ++.=++++..... +. ...+..|-+.|++.++.-+|.|-.+
T Consensus 277 ~~~d~vilDPPR~G~~-----~~~~~~~~---~~~~ivYvSCnP~-tl-aRDl~~L~~~y~~~~v~~~DmFP~T 340 (352)
T PF05958_consen 277 FKFDAVILDPPRAGLD-----EKVIELIK---KLKRIVYVSCNPA-TL-ARDLKILKEGYKLEKVQPVDMFPQT 340 (352)
T ss_dssp TTESEEEE---TT-SC-----HHHHHHHH---HSSEEEEEES-HH-HH-HHHHHHHHCCEEEEEEEEE-SSTTS
T ss_pred cCCCEEEEcCCCCCch-----HHHHHHHh---cCCeEEEEECCHH-HH-HHHHHHHhhcCEEEEEEEeecCCCC
Confidence 4688886521 0011 12333332 4544566655321 11 2344445578999999999986554
No 240
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=93.31 E-value=0.38 Score=47.60 Aligned_cols=84 Identities=11% Similarity=0.023 Sum_probs=54.6
Q ss_pred CCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCCC--------------C-CcEEeccCCCCCCCCCceeEEEEcCceee
Q 010086 117 SAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKSS--------------K-PLVISGEGHRIPFDGNTFDFVFVGGARLE 180 (518)
Q Consensus 117 ~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~~--------------~-~l~~~~da~~LPf~D~SFD~V~s~~~~l~ 180 (518)
+.+++|||+|.|.-..-|+- ....+++-+|.... + ..++.+.+++..-...-||+|+|.. +-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRA--va 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRA--VA 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeeh--cc
Confidence 68999999999986644442 12245888886531 1 2345677776542212299999987 33
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEE
Q 010086 181 KASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 181 ~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
. ......=+...||+||.+++.
T Consensus 146 ~---L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 146 S---LNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred c---hHHHHHHHHHhcccCCcchhh
Confidence 3 344566678899999987543
No 241
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=93.23 E-value=0.9 Score=44.02 Aligned_cols=119 Identities=21% Similarity=0.236 Sum_probs=76.8
Q ss_pred ccccccCCceEEEEeCCCCCCcchh-hhhhhhCCCCCcceEEEEEcCCccchH-------hhccCCceEEEeeceeecCC
Q 010086 311 MADISFKNRYVYVDVGARSYGSSIG-SWFKKQYPKQNKTFDVYAIEADKTFHE-------EYKVKKKVKLLPYAAWVRNE 382 (518)
Q Consensus 311 ~~d~s~~~r~V~iD~GAn~~g~sv~-~~F~~~YP~~~~~f~V~afE~np~~~~-------~~~~~~~V~~~~~Av~~~~~ 382 (518)
+..+.++|+.+++|+||+. |+ ++ .|- ..-|+. +|||||.|+...+ +|. .+|+.++.--+ .+
T Consensus 27 ls~L~~~~g~~l~DIGaGt-Gs-i~iE~a-~~~p~~----~v~AIe~~~~a~~~~~~N~~~fg-~~n~~vv~g~A---p~ 95 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGT-GS-ITIEWA-LAGPSG----RVIAIERDEEALELIERNAARFG-VDNLEVVEGDA---PE 95 (187)
T ss_pred HHhhCCCCCCEEEEeCCCc-cH-HHHHHH-HhCCCc----eEEEEecCHHHHHHHHHHHHHhC-CCcEEEEeccc---hH
Confidence 4456788999999999995 74 54 454 556765 8999999998543 344 78888877311 11
Q ss_pred ceEEEecCCCCcchhhcccCCccc-cccccCCCCCCCCCcceeecccHHHHHhhcCCCCCeEEEEeeccchhhhhHHHHH
Q 010086 383 TLSFQINHDPDKEVVVKGRGMGRI-QPVQSLSDGGFDGEVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLF 461 (518)
Q Consensus 383 tl~f~~~~~~~~~~~~~~~g~~~i-~p~~~~~~~~~~g~~~~v~~vd~s~wl~~~v~~~D~VVlKMDIEGaE~~vL~~l~ 461 (518)
.+. .+ .|..- |-|-...++ .+.++..+.+++..-+|+-.=-...++..++.|-
T Consensus 96 ~L~-------------------~~~~~dai-----FIGGg~~i~--~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~ 149 (187)
T COG2242 96 ALP-------------------DLPSPDAI-----FIGGGGNIE--EILEAAWERLKPGGRLVANAITLETLAKALEALE 149 (187)
T ss_pred hhc-------------------CCCCCCEE-----EECCCCCHH--HHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHH
Confidence 110 00 01000 111111122 4677777888888888888777788999999998
Q ss_pred hcCCc
Q 010086 462 ETGAI 466 (518)
Q Consensus 462 ~~g~i 466 (518)
+.|.-
T Consensus 150 ~~g~~ 154 (187)
T COG2242 150 QLGGR 154 (187)
T ss_pred HcCCc
Confidence 87765
No 242
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=93.18 E-value=0.27 Score=50.23 Aligned_cols=90 Identities=16% Similarity=0.097 Sum_probs=66.4
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHh-cC-CCcEEEEecCCC----------------CCcEEeccCCCCCCC--CCceeEE
Q 010086 113 YLSQSAKSLCVETQYGQDVFALKE-IG-VEDSIGIFKKSS----------------KPLVISGEGHRIPFD--GNTFDFV 172 (518)
Q Consensus 113 ll~~~~rvLDVGcGtG~~~~~L~~-~g-~~~v~gID~s~~----------------~~l~~~~da~~LPf~--D~SFD~V 172 (518)
-++||++||+-|+|+|.++.++++ .+ -++++..|.... ...+..-|....-|. +..+|+|
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaV 181 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAV 181 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceE
Confidence 478999999999999999988876 22 368888887531 112344566655553 6788888
Q ss_pred EEcCceeeccCChHHHHHHHHhcccCCcEEEEEecC
Q 010086 173 FVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRA 208 (518)
Q Consensus 173 ~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~ 208 (518)
|-- ++.|..++-.+..+||.+|.-++.++.
T Consensus 182 FLD------lPaPw~AiPha~~~lk~~g~r~csFSP 211 (314)
T KOG2915|consen 182 FLD------LPAPWEAIPHAAKILKDEGGRLCSFSP 211 (314)
T ss_pred EEc------CCChhhhhhhhHHHhhhcCceEEeccH
Confidence 763 367999999999999999976666543
No 243
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=93.01 E-value=0.41 Score=55.27 Aligned_cols=110 Identities=7% Similarity=-0.020 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHc-CCCCCCCeEEEEcCCCCHhHHHHHhc------C----------------------------------
Q 010086 100 FYSSVFQDLISE-GYLSQSAKSLCVETQYGQDVFALKEI------G---------------------------------- 138 (518)
Q Consensus 100 ~~~~l~~~L~~~-gll~~~~rvLDVGcGtG~~~~~L~~~------g---------------------------------- 138 (518)
+-+.+...++.. +..+++..++|-.||+|.++...+.. |
T Consensus 173 l~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~ 252 (702)
T PRK11783 173 LKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL 252 (702)
T ss_pred CcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 334444444443 33366889999999999987332210 0
Q ss_pred ---CCcEEEEecCCC----------------CCcEEeccCCCCCCC--CCceeEEEEcCceeeccCC---hHHH---HHH
Q 010086 139 ---VEDSIGIFKKSS----------------KPLVISGEGHRIPFD--GNTFDFVFVGGARLEKASK---PLDF---ASE 191 (518)
Q Consensus 139 ---~~~v~gID~s~~----------------~~l~~~~da~~LPf~--D~SFD~V~s~~~~l~~~~d---p~~~---l~E 191 (518)
...++|+|+++. ...+.++|..+++.+ .++||+|+++-=+...+.+ ...+ +.+
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~ 332 (702)
T PRK11783 253 AELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGR 332 (702)
T ss_pred cccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHH
Confidence 125899999741 123568898888665 3689999998521233322 2233 344
Q ss_pred HHhcccCCcEEEEEecCC
Q 010086 192 IVRTLKPEGFAVVHVRAK 209 (518)
Q Consensus 192 i~RVLKPGG~lvi~~~~~ 209 (518)
..|...||+.+++.++..
T Consensus 333 ~lk~~~~g~~~~llt~~~ 350 (702)
T PRK11783 333 RLKQQFGGWNAALFSSSP 350 (702)
T ss_pred HHHHhCCCCeEEEEeCCH
Confidence 555555999998877644
No 244
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=92.75 E-value=0.66 Score=49.80 Aligned_cols=27 Identities=22% Similarity=0.158 Sum_probs=22.1
Q ss_pred ccCCCCCCCCCceeEEEEcCceeeccCC
Q 010086 157 GEGHRIPFDGNTFDFVFVGGARLEKASK 184 (518)
Q Consensus 157 ~da~~LPf~D~SFD~V~s~~~~l~~~~d 184 (518)
|....--||++|.++++|+.+ +||++.
T Consensus 151 GSFY~RLfP~~Slh~~~Ss~s-lHWLS~ 177 (386)
T PLN02668 151 GSFYRRLFPARSIDVFHSAFS-LHWLSQ 177 (386)
T ss_pred ccccccccCCCceEEEEeecc-ceeccc
Confidence 445555699999999999998 999874
No 245
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=92.16 E-value=1.7 Score=48.33 Aligned_cols=34 Identities=12% Similarity=-0.194 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCHhHHHHHhc-----C----CCcEEEEecCC
Q 010086 116 QSAKSLCVETQYGQDVFALKEI-----G----VEDSIGIFKKS 149 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~-----g----~~~v~gID~s~ 149 (518)
...+|||.|||+|.+..++.+. + ..+++|+|+++
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~ 73 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDK 73 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhH
Confidence 4569999999999988655431 1 14688999863
No 246
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=91.55 E-value=0.051 Score=46.61 Aligned_cols=83 Identities=18% Similarity=0.234 Sum_probs=35.6
Q ss_pred EEEcCCCCHhHHHHHh----cCCCcEEEEecCC---CC------------CcEEeccCCCC--CCCCCceeEEEEcCcee
Q 010086 121 LCVETQYGQDVFALKE----IGVEDSIGIFKKS---SK------------PLVISGEGHRI--PFDGNTFDFVFVGGARL 179 (518)
Q Consensus 121 LDVGcGtG~~~~~L~~----~g~~~v~gID~s~---~~------------~l~~~~da~~L--Pf~D~SFD~V~s~~~~l 179 (518)
|+||+..|..+..+.+ .+..+++++|..+ .. ..+++++..+. .+++++||+++.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence 5789888887655543 2224789999875 10 11234544322 234789999998652
Q ss_pred eccCChHHHHHHHHhcccCCcEEEEE
Q 010086 180 EKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
|..+.....+..+.+.|+|||++++.
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 33333446788899999999999874
No 247
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=91.16 E-value=0.25 Score=51.23 Aligned_cols=47 Identities=11% Similarity=-0.017 Sum_probs=35.4
Q ss_pred HHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcC--CCcEEEEecCC
Q 010086 103 SVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIG--VEDSIGIFKKS 149 (518)
Q Consensus 103 ~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g--~~~v~gID~s~ 149 (518)
-+++++++.-.+.++..+||.+||.|..+..+.+.. ...|+|+|.++
T Consensus 6 Vll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~ 54 (296)
T PRK00050 6 VLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDP 54 (296)
T ss_pred ccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCH
Confidence 344455544445788899999999999998877653 36899999874
No 248
>PRK13699 putative methylase; Provisional
Probab=91.16 E-value=0.13 Score=51.03 Aligned_cols=42 Identities=21% Similarity=0.120 Sum_probs=28.1
Q ss_pred cccccCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccch
Q 010086 312 ADISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFH 361 (518)
Q Consensus 312 ~d~s~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~ 361 (518)
+..+..++++++|.=+|+ |++. .-....- + +.+++|-||...
T Consensus 157 i~~~s~~g~~vlDpf~Gs-gtt~--~aa~~~~---r--~~~g~e~~~~y~ 198 (227)
T PRK13699 157 IESFTHPNAIVLDPFAGS-GSTC--VAALQSG---R--RYIGIELLEQYH 198 (227)
T ss_pred HHHhCCCCCEEEeCCCCC-CHHH--HHHHHcC---C--CEEEEecCHHHH
Confidence 345667899999988775 7644 1122222 2 688999999754
No 249
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=90.60 E-value=0.96 Score=47.20 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=29.4
Q ss_pred CceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEE
Q 010086 167 NTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVV 204 (518)
Q Consensus 167 ~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi 204 (518)
++||+|+...- ++-..|--..+.-|..+|||||+.+-
T Consensus 258 ~~~d~VvTcfF-IDTa~NileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 258 GSYDVVVTCFF-IDTAHNILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred CccceEEEEEE-eechHHHHHHHHHHHHhccCCcEEEe
Confidence 46999997763 56556677889999999999998654
No 250
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.55 E-value=0.64 Score=46.54 Aligned_cols=94 Identities=18% Similarity=0.195 Sum_probs=64.0
Q ss_pred CCCeEEEEcCCCCHhHHHHHhc------CC----CcEEEEecCCCCCc----EEeccCCCC--------CCCCCceeEEE
Q 010086 116 QSAKSLCVETQYGQDVFALKEI------GV----EDSIGIFKKSSKPL----VISGEGHRI--------PFDGNTFDFVF 173 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~------g~----~~v~gID~s~~~~l----~~~~da~~L--------Pf~D~SFD~V~ 173 (518)
.-.|++|+.+.+|..++.|.+. +. ..+++||+-+-.|. -+++|..+. -|..+--|+|+
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVv 120 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVV 120 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEE
Confidence 3468999999999988777541 11 13999999764332 246766553 27788999999
Q ss_pred EcCc----eeeccCCh------HHHHHHHHhcccCCcEEEEEecCC
Q 010086 174 VGGA----RLEKASKP------LDFASEIVRTLKPEGFAVVHVRAK 209 (518)
Q Consensus 174 s~~~----~l~~~~dp------~~~l~Ei~RVLKPGG~lvi~~~~~ 209 (518)
|-++ .+|.+..- ..+++=..+||||||.++--+-++
T Consensus 121 cDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg 166 (294)
T KOG1099|consen 121 CDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRG 166 (294)
T ss_pred eCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhcc
Confidence 9874 35554321 135677789999999998864333
No 251
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=89.97 E-value=0.55 Score=49.39 Aligned_cols=67 Identities=15% Similarity=-0.016 Sum_probs=35.9
Q ss_pred CCCeEEEEcCCCCHhHHHHH--------hc----C-----CCcEEEEecCC-------------------CCCcE---Ee
Q 010086 116 QSAKSLCVETQYGQDVFALK--------EI----G-----VEDSIGIFKKS-------------------SKPLV---IS 156 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~--------~~----g-----~~~v~gID~s~-------------------~~~l~---~~ 156 (518)
..-+|+|+||.+|..+..+- +. + .-.|+--|+-. .+..+ +-
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 34589999999998774322 11 1 01455555421 02222 34
Q ss_pred ccCCCCCCCCCceeEEEEcCceeeccC
Q 010086 157 GEGHRIPFDGNTFDFVFVGGARLEKAS 183 (518)
Q Consensus 157 ~da~~LPf~D~SFD~V~s~~~~l~~~~ 183 (518)
+....--||++|.|+++|+.+ |||++
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~a-lHWLS 121 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYA-LHWLS 121 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES--TTB-S
T ss_pred chhhhccCCCCceEEEEEech-hhhcc
Confidence 677777799999999999998 99975
No 252
>PRK11524 putative methyltransferase; Provisional
Probab=88.95 E-value=0.29 Score=50.09 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=36.1
Q ss_pred EEeccCCCC--CCCCCceeEEEEcCceee--c---c----------CChHHHHHHHHhcccCCcEEEEEec
Q 010086 154 VISGEGHRI--PFDGNTFDFVFVGGARLE--K---A----------SKPLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 154 ~~~~da~~L--Pf~D~SFD~V~s~~~~l~--~---~----------~dp~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
++.+|+.+. .+++++||+|++.-=+.. . . .-....+.|+.|+|||||.+++...
T Consensus 11 i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 11 IIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred EEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 456666653 477899999998531010 0 0 0013688999999999999988654
No 253
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=88.52 E-value=1.4 Score=46.52 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=57.6
Q ss_pred CCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCCC-cE--------EeccCCC------CCCCC-CceeEEEE
Q 010086 113 YLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSKP-LV--------ISGEGHR------IPFDG-NTFDFVFV 174 (518)
Q Consensus 113 ll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~~-l~--------~~~da~~------LPf~D-~SFD~V~s 174 (518)
..+++++|+-+|||+ |.++.++++ .|..+|+.+|.++..- +. .....++ +.... .-||+|+-
T Consensus 165 ~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie 244 (350)
T COG1063 165 AVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIE 244 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEE
Confidence 345556999999999 888755554 6778999999875311 11 1111110 01111 26999997
Q ss_pred cCceeeccCChHHHHHHHHhcccCCcEEEEE-ecCC
Q 010086 175 GGARLEKASKPLDFASEIVRTLKPEGFAVVH-VRAK 209 (518)
Q Consensus 175 ~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~-~~~~ 209 (518)
... -..++..+.+.+||||.+++. +...
T Consensus 245 ~~G-------~~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 245 AVG-------SPPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred CCC-------CHHHHHHHHHHhcCCCEEEEEeccCC
Confidence 653 124788999999999998776 4433
No 254
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=88.48 E-value=4.8 Score=41.63 Aligned_cols=85 Identities=11% Similarity=0.081 Sum_probs=52.1
Q ss_pred CCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEec---cCCCCCCCCCceeEEEEcCcee
Q 010086 114 LSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISG---EGHRIPFDGNTFDFVFVGGARL 179 (518)
Q Consensus 114 l~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~---da~~LPf~D~SFD~V~s~~~~l 179 (518)
..++.+||-.|+|. |..+..+++ .|...|+++|.++.. ..++.. +..++.-..+.||+|+....
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G-- 244 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG-- 244 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC--
Confidence 34789999999876 666555544 575578899876421 011111 11111111234898887643
Q ss_pred eccCChHHHHHHHHhcccCCcEEEEE
Q 010086 180 EKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
. ...+.+..+.|||||.+++.
T Consensus 245 ----~-~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 245 ----H-PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred ----C-HHHHHHHHHHhhcCCEEEEE
Confidence 1 24678889999999998775
No 255
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=88.29 E-value=0.58 Score=48.28 Aligned_cols=93 Identities=15% Similarity=0.276 Sum_probs=57.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------------CCcEEeccCCC-CC-C-CCCceeEEEE
Q 010086 115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------------KPLVISGEGHR-IP-F-DGNTFDFVFV 174 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------------~~l~~~~da~~-LP-f-~D~SFD~V~s 174 (518)
..+.+|||+=|=||.++.+....|..+|++||.|.. ...++++|+-+ +. . ..+.||+|++
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 357899999999999987766667668999999831 11234555432 11 1 2468999997
Q ss_pred cCceeeccC-----ChHHHHHHHHhcccCCcEEEEEec
Q 010086 175 GGARLEKAS-----KPLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 175 ~~~~l~~~~-----dp~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
--=+|-.-. +-.+.+..+.++|+|||.+++.+.
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 531132211 123467788999999999877653
No 256
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=88.03 E-value=4.7 Score=39.33 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=33.7
Q ss_pred cHHHHHhhcCCCCCeEEEEee-ccchhhhhHHHHHhcCCcccccEEEEEeecc
Q 010086 428 DFADWLKNTVTDKDFVVMKMD-VEGTEFDLIPRLFETGAICLIDEIFLECHYN 479 (518)
Q Consensus 428 d~s~wl~~~v~~~D~VVlKMD-IEGaE~~vL~~l~~~g~i~~IDeLfvE~H~~ 479 (518)
|+.+++...-..-|.|++=== -+|...++++.|.+.|.+..-.-++||++..
T Consensus 110 D~~~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 110 NALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred hHHHHHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 445555332123465554322 4677888888888888888877889998764
No 257
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=87.96 E-value=0.94 Score=38.53 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=38.4
Q ss_pred CceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHh----h---ccCCceEEEeece
Q 010086 318 NRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEE----Y---KVKKKVKLLPYAA 377 (518)
Q Consensus 318 ~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~----~---~~~~~V~~~~~Av 377 (518)
|+.-++|+|++ .|. ++-++.+++|. .+|+++|.+|...+. . ...++|+++...+
T Consensus 1 p~~~vLDlGcG-~G~-~~~~l~~~~~~----~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 1 PGGRVLDLGCG-TGR-LSIALARLFPG----ARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp TTCEEEEETTT-TSH-HHHHHHHHHTT----SEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred CCCEEEEEcCc-CCH-HHHHHHhcCCC----CEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc
Confidence 34556999999 485 44677777774 489999999986442 2 2457888887533
No 258
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=87.81 E-value=2.4 Score=43.01 Aligned_cols=90 Identities=19% Similarity=0.233 Sum_probs=56.2
Q ss_pred HHHcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC--------C-cEEeccCCC-----CCCCCCceeE
Q 010086 108 LISEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK--------P-LVISGEGHR-----IPFDGNTFDF 171 (518)
Q Consensus 108 L~~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~--------~-l~~~~da~~-----LPf~D~SFD~ 171 (518)
+...+.++++.++|..|+|. |..+..+++ .| .+|++++.++.. . .++...... ...+...+|.
T Consensus 157 l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~ 235 (338)
T cd08254 157 VVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDV 235 (338)
T ss_pred HHhccCCCCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceE
Confidence 44455678899999988764 666655554 56 568888765310 0 011111000 0124567999
Q ss_pred EEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 172 VFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 172 V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
|+.... ....+.++.|.|+|||.++..
T Consensus 236 vid~~g-------~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 236 IFDFVG-------TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred EEECCC-------CHHHHHHHHHHhhcCCEEEEE
Confidence 987542 134688999999999998875
No 259
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=87.20 E-value=3.1 Score=44.02 Aligned_cols=96 Identities=14% Similarity=0.081 Sum_probs=59.1
Q ss_pred HcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC--------C-cEEeccCC-----CC-CC-CCCceeE
Q 010086 110 SEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK--------P-LVISGEGH-----RI-PF-DGNTFDF 171 (518)
Q Consensus 110 ~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~--------~-l~~~~da~-----~L-Pf-~D~SFD~ 171 (518)
..+.+.++.+||.+|||+ |..+..+++ .|...++++|.++.. . .++..... .+ .+ ++..+|+
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~ 257 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDV 257 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCE
Confidence 344577899999999988 777765554 564469999865310 1 11111111 01 12 2336899
Q ss_pred EEEcCce--------------eeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 172 VFVGGAR--------------LEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 172 V~s~~~~--------------l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
|+..... |+-..++...+.++.|.|+|||.+++.
T Consensus 258 vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 258 CIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred EEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 9875320 011134556889999999999998776
No 260
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=86.83 E-value=1.2 Score=39.49 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=27.1
Q ss_pred CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecC
Q 010086 116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKK 148 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s 148 (518)
+...-+|||||+|.++..|...| ..-.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EG-y~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEG-YPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCC-CCccccccc
Confidence 45679999999999999999888 467889974
No 261
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=86.66 E-value=4.3 Score=41.44 Aligned_cols=131 Identities=20% Similarity=0.409 Sum_probs=77.7
Q ss_pred EEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhccCCceEEEeeceeecCCceEEEecCCCCcchhhcc
Q 010086 321 VYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYKVKKKVKLLPYAAWVRNETLSFQINHDPDKEVVVKG 400 (518)
Q Consensus 321 V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~~~~~V~~~~~Av~~~~~tl~f~~~~~~~~~~~~~~ 400 (518)
-++|+|||. |. ++.-+.+.|. +|||=|.++....+++. +|.++++..-|...+ ..|
T Consensus 97 ~lLDlGAGd-G~-VT~~l~~~f~------~v~aTE~S~~Mr~rL~~-kg~~vl~~~~w~~~~-~~f-------------- 152 (265)
T PF05219_consen 97 SLLDLGAGD-GE-VTERLAPLFK------EVYATEASPPMRWRLSK-KGFTVLDIDDWQQTD-FKF-------------- 152 (265)
T ss_pred ceEEecCCC-cH-HHHHHHhhcc------eEEeecCCHHHHHHHHh-CCCeEEehhhhhccC-Cce--------------
Confidence 478999994 85 7667776666 79999999987666654 667777765554211 011
Q ss_pred cCCccccccccCCCCCCCCCcceeecccH----------HHHHhhcCCCCCeEEEEeeccchhhhhHHHHHhcCCccccc
Q 010086 401 RGMGRIQPVQSLSDGGFDGEVDRIQGFDF----------ADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETGAICLID 470 (518)
Q Consensus 401 ~g~~~i~p~~~~~~~~~~g~~~~v~~vd~----------s~wl~~~v~~~D~VVlKMDIEGaE~~vL~~l~~~g~i~~ID 470 (518)
.-|..+|+ .+=|+..+++.=.+|+=+ |||-
T Consensus 153 ---------------------DvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAv--------VlP~----------- 192 (265)
T PF05219_consen 153 ---------------------DVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAV--------VLPF----------- 192 (265)
T ss_pred ---------------------EEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEE--------Eecc-----------
Confidence 11223333 222222222222222222 1111
Q ss_pred EEEEEeecccccccCCCCCCCcccccHHHHHH-HHHHHhhCCeeeeec
Q 010086 471 EIFLECHYNRWQRCCPGQRSPKYKKTYEQCLE-LFTSLRQNGVLVHQW 517 (518)
Q Consensus 471 eLfvE~H~~~~~~~~~g~~~~~~~~~~~~cl~-L~~~LR~~Gv~vHqW 517 (518)
.-|||.+..+|.+ |-+.-+-.+.|++|..+ |...|.-.||.|-.|
T Consensus 193 ~pyVE~~~g~~~~--P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~ 238 (265)
T PF05219_consen 193 RPYVEFGGGKSNR--PSELLPVKGATFEEQVSSLVNVFEPAGFEVERW 238 (265)
T ss_pred cccEEcCCCCCCC--chhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 3488998744333 33334455688988877 889999999998777
No 262
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=86.25 E-value=3.9 Score=44.71 Aligned_cols=117 Identities=15% Similarity=0.175 Sum_probs=73.2
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------CCcEEeccCCCCCCC---CCceeEEEEc
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------KPLVISGEGHRIPFD---GNTFDFVFVG 175 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~~l~~~~da~~LPf~---D~SFD~V~s~ 175 (518)
..++.++||+=||.|.++..|++. +.+|+|+++++. ...+..+++++..-. ...||.|+..
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvD 369 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVD 369 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEEC
Confidence 356789999999999999999855 489999999842 123456777766432 3578988864
Q ss_pred CceeeccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhc-cCccEEEEeccCCCCC
Q 010086 176 GARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLF-NSCKLVKSRDIDGIDS 237 (518)
Q Consensus 176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf-~~~~~v~~~~v~~~~~ 237 (518)
-= .-=. ...+++++.+ ++|-.++++..... +-...+..|- ..|++.++.-+|.|=+
T Consensus 370 PP--R~G~-~~~~lk~l~~-~~p~~IvYVSCNP~--TlaRDl~~L~~~gy~i~~v~~~DmFP~ 426 (432)
T COG2265 370 PP--RAGA-DREVLKQLAK-LKPKRIVYVSCNPA--TLARDLAILASTGYEIERVQPFDMFPH 426 (432)
T ss_pred CC--CCCC-CHHHHHHHHh-cCCCcEEEEeCCHH--HHHHHHHHHHhCCeEEEEEEEeccCCC
Confidence 20 0000 1245555554 67888888876422 1112333332 3466888887776543
No 263
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=86.24 E-value=1 Score=50.16 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=56.1
Q ss_pred CCCCCeEEEEcCCC-CHhHHH-HHhcCCCcEEEEecCCCC--------CcEEeccC-C----------CC----------
Q 010086 114 LSQSAKSLCVETQY-GQDVFA-LKEIGVEDSIGIFKKSSK--------PLVISGEG-H----------RI---------- 162 (518)
Q Consensus 114 l~~~~rvLDVGcGt-G~~~~~-L~~~g~~~v~gID~s~~~--------~l~~~~da-~----------~L---------- 162 (518)
..++++|+-+|||. |..+.. ++..| ..|+++|.++.. ..++.-+. + ++
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 35789999999998 766644 44578 489999987421 11111111 0 00
Q ss_pred CCCC--CceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 163 PFDG--NTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 163 Pf~D--~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
.|.+ ..+|+|+.... ...-..|....+|+.+.+||||+++..
T Consensus 241 ~~~~~~~gaDVVIetag-~pg~~aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 241 LFAEQAKEVDIIITTAL-IPGKPAPKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred HHHhccCCCCEEEECCC-CCcccCcchHHHHHHHhcCCCCEEEEE
Confidence 0111 36999998764 322223534459999999999997765
No 264
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=86.21 E-value=4.6 Score=39.30 Aligned_cols=90 Identities=9% Similarity=0.026 Sum_probs=54.5
Q ss_pred CCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCC--------------CCcEEeccCCCCCCCCCceeEEEEcCceee
Q 010086 117 SAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSS--------------KPLVISGEGHRIPFDGNTFDFVFVGGARLE 180 (518)
Q Consensus 117 ~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~--------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~ 180 (518)
..-+|+||||+|-.+..|++. +.....++|+++. ....++.|... -+..+++|+++.+--+.-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~-~l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS-GLRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHh-hhccCCccEEEECCCcCc
Confidence 467999999999999888763 3457888999852 11234443221 122378887776542010
Q ss_pred c----c------------CC----hHHHHHHHHhcccCCcEEEEEec
Q 010086 181 K----A------------SK----PLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 181 ~----~------------~d----p~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
- + .+ -.+++..+--+|-|.|++++...
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 0 0 01 12345556667789999888753
No 265
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=85.82 E-value=3.1 Score=42.15 Aligned_cols=91 Identities=19% Similarity=0.205 Sum_probs=60.6
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCCC-----------CcE--EeccCCCCCC----CCCceeEEE
Q 010086 113 YLSQSAKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSSK-----------PLV--ISGEGHRIPF----DGNTFDFVF 173 (518)
Q Consensus 113 ll~~~~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~~-----------~l~--~~~da~~LPf----~D~SFD~V~ 173 (518)
.++||.|||=+|+++|..+....+. | ..-|++++.|+.. +.+ +..|+.. |. -=..+|+||
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArh-P~KYRmlVgmVDvIF 231 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARH-PAKYRMLVGMVDVIF 231 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCC-chheeeeeeeEEEEe
Confidence 5799999999999999988777663 3 3478999988531 111 2334432 21 234789999
Q ss_pred EcCceeeccCChHH-HHHHHHhcccCCcEEEEEecC
Q 010086 174 VGGARLEKASKPLD-FASEIVRTLKPEGFAVVHVRA 208 (518)
Q Consensus 174 s~~~~l~~~~dp~~-~l~Ei~RVLKPGG~lvi~~~~ 208 (518)
+--+ + +|..+ ++--+.--||+||.+++.+-+
T Consensus 232 aDva---q-pdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 232 ADVA---Q-PDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred ccCC---C-chhhhhhhhhhhhhhccCCeEEEEEec
Confidence 8542 2 22222 345677789999999998743
No 266
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=85.55 E-value=0.78 Score=47.11 Aligned_cols=93 Identities=18% Similarity=0.283 Sum_probs=61.4
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhc--CCCcEEEEecCCC---------------CCcEEeccCCCC-C-CCCCceeEEEE
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEI--GVEDSIGIFKKSS---------------KPLVISGEGHRI-P-FDGNTFDFVFV 174 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~--g~~~v~gID~s~~---------------~~l~~~~da~~L-P-f~D~SFD~V~s 174 (518)
..++.+|||++++.|.-+..+++. +-+.+++.|++.. ...+...|+..+ | .....||.|+.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 568899999999999988777763 2469999998742 111233565554 2 23446999995
Q ss_pred ----cC-ceeeccCC----------------hHHHHHHHHhcc----cCCcEEEEEe
Q 010086 175 ----GG-ARLEKASK----------------PLDFASEIVRTL----KPEGFAVVHV 206 (518)
Q Consensus 175 ----~~-~~l~~~~d----------------p~~~l~Ei~RVL----KPGG~lvi~~ 206 (518)
++ ..+..-++ ..+.+..+.+.| ||||+++-.+
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 22 11222111 124678889999 9999987764
No 267
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.55 E-value=2 Score=45.11 Aligned_cols=90 Identities=11% Similarity=0.056 Sum_probs=57.8
Q ss_pred HcCCCCCCCeEEEEcCCC-CHhHHHHH-hcCCCcEEEEecCCCCC--------c-EEe-ccC---C------CCCCCCCc
Q 010086 110 SEGYLSQSAKSLCVETQY-GQDVFALK-EIGVEDSIGIFKKSSKP--------L-VIS-GEG---H------RIPFDGNT 168 (518)
Q Consensus 110 ~~gll~~~~rvLDVGcGt-G~~~~~L~-~~g~~~v~gID~s~~~~--------l-~~~-~da---~------~LPf~D~S 168 (518)
..+-+++|++||-+|+|+ |..+...+ ..|..+|+.+|+++..- . +.+ ... . +--+.+..
T Consensus 163 r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~ 242 (354)
T KOG0024|consen 163 RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQ 242 (354)
T ss_pred hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccC
Confidence 345689999999999999 76664444 36888999999875210 0 000 000 0 00133455
Q ss_pred eeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086 169 FDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 169 FD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
||++|.... ++ ..++-..-.||+||.+++.-
T Consensus 243 ~d~~~dCsG-~~------~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 243 PDVTFDCSG-AE------VTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred CCeEEEccC-ch------HHHHHHHHHhccCCEEEEec
Confidence 999997664 33 34566678999999966653
No 268
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=85.21 E-value=2.8 Score=44.68 Aligned_cols=91 Identities=21% Similarity=0.274 Sum_probs=61.7
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC--------------------CC--cEEeccCCCC-CCCCCce
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS--------------------KP--LVISGEGHRI-PFDGNTF 169 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~--------------------~~--l~~~~da~~L-Pf~D~SF 169 (518)
++...++|-+|.|.|..+..|.+.+ +.+++-+|+.+. .+ .++..|+.+. -=..+.|
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 3455789999999999998887764 789999998741 01 1234444332 1234589
Q ss_pred eEEEEcCceeeccCCh-------HHHHHHHHhcccCCcEEEEEec
Q 010086 170 DFVFVGGARLEKASKP-------LDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 170 D~V~s~~~~l~~~~dp-------~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
|+|+... ..-.+| ..+..-..|-|+++|.++++.+
T Consensus 367 D~vIVDl---~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 367 DVVIVDL---PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred cEEEEeC---CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 9988743 222223 2467778899999999999864
No 269
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=85.05 E-value=3.5 Score=42.80 Aligned_cols=88 Identities=13% Similarity=0.018 Sum_probs=52.8
Q ss_pred CCCCCeEEEEcCCC-CHhHHHH-Hh-cCCCcEEEEecCCCCCcE-EeccC-CCC-CCCCC-ceeEEEEcCceeeccCChH
Q 010086 114 LSQSAKSLCVETQY-GQDVFAL-KE-IGVEDSIGIFKKSSKPLV-ISGEG-HRI-PFDGN-TFDFVFVGGARLEKASKPL 186 (518)
Q Consensus 114 l~~~~rvLDVGcGt-G~~~~~L-~~-~g~~~v~gID~s~~~~l~-~~~da-~~L-Pf~D~-SFD~V~s~~~~l~~~~dp~ 186 (518)
++++++||-+|||+ |..+..+ +. .|..+|+++|.++..... ...+. ..+ ++.++ .+|+|+.... -. . -.
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~G-~~--~-~~ 236 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECVG-GR--G-SQ 236 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECCC-CC--c-cH
Confidence 57899999999987 6655443 43 354689999976532111 11111 001 12222 4898886542 10 0 12
Q ss_pred HHHHHHHhcccCCcEEEEE
Q 010086 187 DFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 187 ~~l~Ei~RVLKPGG~lvi~ 205 (518)
..+.+..+.|||||++++.
T Consensus 237 ~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 237 SAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred HHHHHHHHhCcCCcEEEEE
Confidence 4688899999999998764
No 270
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=84.20 E-value=0.92 Score=45.50 Aligned_cols=66 Identities=21% Similarity=0.380 Sum_probs=38.5
Q ss_pred CCCC--CeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC---------------C---------CcEEeccCCC-CCCCC
Q 010086 114 LSQS--AKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS---------------K---------PLVISGEGHR-IPFDG 166 (518)
Q Consensus 114 l~~~--~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~---------------~---------~l~~~~da~~-LPf~D 166 (518)
++++ .+|||.=+|-|..+..++..| .+|++++.|+. + +.++.+|..+ |+.++
T Consensus 71 lk~~~~~~VLDaTaGLG~Da~vlA~~G-~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~ 149 (234)
T PF04445_consen 71 LKPGMRPSVLDATAGLGRDAFVLASLG-CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPD 149 (234)
T ss_dssp -BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHS
T ss_pred CCCCCCCEEEECCCcchHHHHHHHccC-CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcC
Confidence 4555 389999999999998888888 58999998741 1 1245667655 57779
Q ss_pred CceeEEEEcCceeec
Q 010086 167 NTFDFVFVGGARLEK 181 (518)
Q Consensus 167 ~SFD~V~s~~~~l~~ 181 (518)
++||+|+.--. |.+
T Consensus 150 ~s~DVVY~DPM-Fp~ 163 (234)
T PF04445_consen 150 NSFDVVYFDPM-FPE 163 (234)
T ss_dssp S--SEEEE--S----
T ss_pred CCCCEEEECCC-CCC
Confidence 99999998765 655
No 271
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=83.95 E-value=1.1 Score=40.07 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=24.3
Q ss_pred EEEEcCCCCHhHHHHHhcCC-CcEEEEecCC
Q 010086 120 SLCVETQYGQDVFALKEIGV-EDSIGIFKKS 149 (518)
Q Consensus 120 vLDVGcGtG~~~~~L~~~g~-~~v~gID~s~ 149 (518)
+||||||.|..+..+.+.+. .+++++|.++
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~ 32 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLP 32 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecCH
Confidence 79999999999988877653 3789998754
No 272
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=83.76 E-value=1.7 Score=42.35 Aligned_cols=56 Identities=18% Similarity=0.105 Sum_probs=41.6
Q ss_pred CeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC-----------C----CcEEeccCCCCCCCCCceeEEEEcC
Q 010086 118 AKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS-----------K----PLVISGEGHRIPFDGNTFDFVFVGG 176 (518)
Q Consensus 118 ~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~-----------~----~l~~~~da~~LPf~D~SFD~V~s~~ 176 (518)
+...|+|+|+|.++...++. ..+|++|+..+. + ..++.+|+..-.| +.-|.|+|-.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEm 104 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEM 104 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHH
Confidence 57899999999988555544 468999998752 1 1246788888777 6678888865
No 273
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=83.70 E-value=0.52 Score=41.83 Aligned_cols=39 Identities=18% Similarity=0.346 Sum_probs=27.5
Q ss_pred ceeEEEEcCc----eeeccCC-hHHHHHHHHhcccCCcEEEEEe
Q 010086 168 TFDFVFVGGA----RLEKASK-PLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 168 SFD~V~s~~~----~l~~~~d-p~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
.||+|+|..+ +|.|-++ ...+++-+++.|+|||++++..
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 3899999885 2333221 2368899999999999999975
No 274
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=83.31 E-value=14 Score=37.88 Aligned_cols=103 Identities=13% Similarity=0.167 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHc-CCCCCCCeEEEEcCCCCH--hHHHHHh--cCCCcEEEEecCC------------CCC---cEEecc
Q 010086 99 NFYSSVFQDLISE-GYLSQSAKSLCVETQYGQ--DVFALKE--IGVEDSIGIFKKS------------SKP---LVISGE 158 (518)
Q Consensus 99 ~~~~~l~~~L~~~-gll~~~~rvLDVGcGtG~--~~~~L~~--~g~~~v~gID~s~------------~~~---l~~~~d 158 (518)
.|+....+.|.++ |. .+.||||||--. .+...++ ..-.+|+-+|..+ .+. .++++|
T Consensus 54 ~Fl~RaVr~la~~~GI----rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD 129 (267)
T PF04672_consen 54 AFLRRAVRYLAEEAGI----RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQAD 129 (267)
T ss_dssp HHHHHHHHHHHCTT-------EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--
T ss_pred HHHHHHHHHHHHhcCc----ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCC
Confidence 4666666667665 43 589999999631 2333332 2347899999763 122 245555
Q ss_pred CCCC------CCCCCcee-----EEEEcCceeeccC---ChHHHHHHHHhcccCCcEEEEEe
Q 010086 159 GHRI------PFDGNTFD-----FVFVGGARLEKAS---KPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 159 a~~L------Pf~D~SFD-----~V~s~~~~l~~~~---dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
..+. |--.+-+| .|+...+ |||++ +|...++.+...|-||.+++++-
T Consensus 130 ~r~p~~iL~~p~~~~~lD~~rPVavll~~v-Lh~v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 130 LRDPEAILAHPEVRGLLDFDRPVAVLLVAV-LHFVPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp TT-HHHHHCSHHHHCC--TTS--EEEECT--GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred CCCHHHHhcCHHHHhcCCCCCCeeeeeeee-eccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 4331 00112233 3444455 89986 47789999999999999999973
No 275
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=83.22 E-value=5.8 Score=41.29 Aligned_cols=91 Identities=15% Similarity=0.172 Sum_probs=55.0
Q ss_pred HHHcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCC----C-C-CCCCcee
Q 010086 108 LISEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHR----I-P-FDGNTFD 170 (518)
Q Consensus 108 L~~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~----L-P-f~D~SFD 170 (518)
+...+.++++.+||-.|+|. |..+..+++ .|...|+++|.++.. ..++.....+ + . .....+|
T Consensus 168 ~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 168 AVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 34445578899999999876 666555554 564469999865421 0111111000 0 0 1223589
Q ss_pred EEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 171 FVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 171 ~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
+|+.... .+ ..+.+..+.||+||++++.
T Consensus 248 ~vid~~g------~~-~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 248 VVIDAVG------RP-ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEEECCC------CH-HHHHHHHHHhccCCEEEEE
Confidence 8887543 12 4577889999999998764
No 276
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=83.03 E-value=3.3 Score=42.33 Aligned_cols=83 Identities=13% Similarity=0.105 Sum_probs=49.7
Q ss_pred CCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCCCcEEeccCCCCCC---CCCceeEEEEcCceeeccCChHHHH
Q 010086 115 SQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSKPLVISGEGHRIPF---DGNTFDFVFVGGARLEKASKPLDFA 189 (518)
Q Consensus 115 ~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~~l~~~~da~~LPf---~D~SFD~V~s~~~~l~~~~dp~~~l 189 (518)
.++.++|-+|||. |..+..+++ .|...++++|.++..-.....+ .-+.. ....||+|+.... . ...+
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~-~~i~~~~~~~~g~Dvvid~~G------~-~~~~ 214 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY-EVLDPEKDPRRDYRAIYDASG------D-PSLI 214 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc-cccChhhccCCCCCEEEECCC------C-HHHH
Confidence 3578899999987 766655544 5755577777643110000000 00000 1246899887653 1 2357
Q ss_pred HHHHhcccCCcEEEEE
Q 010086 190 SEIVRTLKPEGFAVVH 205 (518)
Q Consensus 190 ~Ei~RVLKPGG~lvi~ 205 (518)
.++.+.|+|||++++.
T Consensus 215 ~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 215 DTLVRRLAKGGEIVLA 230 (308)
T ss_pred HHHHHhhhcCcEEEEE
Confidence 8889999999998764
No 277
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=82.85 E-value=1.7 Score=46.11 Aligned_cols=86 Identities=15% Similarity=0.228 Sum_probs=51.5
Q ss_pred CeEEEEcCCCCHhHHHHHhc-C-CCcEEEEecCCC-------------------CCcEEeccCCCCCCC-CCceeEEEEc
Q 010086 118 AKSLCVETQYGQDVFALKEI-G-VEDSIGIFKKSS-------------------KPLVISGEGHRIPFD-GNTFDFVFVG 175 (518)
Q Consensus 118 ~rvLDVGcGtG~~~~~L~~~-g-~~~v~gID~s~~-------------------~~l~~~~da~~LPf~-D~SFD~V~s~ 175 (518)
.++||||.|+|..+-++... . ...++-++.|+. +.--+..| .+|++ ..++++|+..
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~d--Rl~lp~ad~ytl~i~~ 192 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTED--RLSLPAADLYTLAIVL 192 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchh--ccCCCccceeehhhhh
Confidence 46999999999987666542 1 124444444421 00012223 44553 4568888876
Q ss_pred CceeeccCChH---HHHHHHHhcccCCcEEEEEe
Q 010086 176 GARLEKASKPL---DFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 176 ~~~l~~~~dp~---~~l~Ei~RVLKPGG~lvi~~ 206 (518)
+- |-+..++. ..++-....+.|||.++|.-
T Consensus 193 ~e-Ll~d~~ek~i~~~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 193 DE-LLPDGNEKPIQVNIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred hh-hccccCcchHHHHHHHHHHhccCCCeEEEEe
Confidence 65 44444332 35677888999999988863
No 278
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=81.49 E-value=9.3 Score=36.88 Aligned_cols=91 Identities=22% Similarity=0.174 Sum_probs=56.3
Q ss_pred HHHHHcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCCC-------CCCCC
Q 010086 106 QDLISEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHRI-------PFDGN 167 (518)
Q Consensus 106 ~~L~~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~L-------Pf~D~ 167 (518)
.-+.....+.++.+||..|+|+ |..+..+.+ .| .++++++.++.. ..++ +.... ....+
T Consensus 124 ~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~ 200 (271)
T cd05188 124 HALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGADHVI--DYKEEDLEEELRLTGGG 200 (271)
T ss_pred HHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCceec--cCCcCCHHHHHHHhcCC
Confidence 3344555568899999999996 555544444 56 688888875311 0011 11111 11245
Q ss_pred ceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086 168 TFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 168 SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
.+|+|+.... ....+..+.+.|+++|.++...
T Consensus 201 ~~d~vi~~~~-------~~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 201 GADVVIDAVG-------GPETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred CCCEEEECCC-------CHHHHHHHHHhcccCCEEEEEc
Confidence 7999987542 1145777889999999988754
No 279
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=81.37 E-value=1.9 Score=47.64 Aligned_cols=49 Identities=22% Similarity=0.173 Sum_probs=36.9
Q ss_pred HhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC
Q 010086 98 VNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS 150 (518)
Q Consensus 98 v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~ 150 (518)
++.+...+++.. .++.+..+||+-||||....++++ |+..|+||++++.
T Consensus 368 aevLys~i~e~~---~l~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~ 416 (534)
T KOG2187|consen 368 AEVLYSTIGEWA---GLPADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPD 416 (534)
T ss_pred HHHHHHHHHHHh---CCCCCcEEEEEeecCCceehhhhc-cccceeeeecChh
Confidence 444555555443 356778899999999999988875 5689999999863
No 280
>PRK07402 precorrin-6B methylase; Provisional
Probab=81.24 E-value=3.5 Score=39.38 Aligned_cols=40 Identities=33% Similarity=0.308 Sum_probs=30.9
Q ss_pred CCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchH
Q 010086 317 KNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 317 ~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~ 362 (518)
+++..++|+|++ .|. ++.++.+.+|.. +|+++|.||...+
T Consensus 39 ~~~~~VLDiG~G-~G~-~~~~la~~~~~~----~V~~vD~s~~~~~ 78 (196)
T PRK07402 39 EPDSVLWDIGAG-TGT-IPVEAGLLCPKG----RVIAIERDEEVVN 78 (196)
T ss_pred CCCCEEEEeCCC-CCH-HHHHHHHHCCCC----EEEEEeCCHHHHH
Confidence 466789999999 485 556777777743 8999999998754
No 281
>PRK04457 spermidine synthase; Provisional
Probab=80.87 E-value=14 Score=37.36 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=28.5
Q ss_pred EEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchH
Q 010086 321 VYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 321 V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~ 362 (518)
-++|+|++ -|+ ++.++.+.+|.. +|+++|.||...+
T Consensus 69 ~vL~IG~G-~G~-l~~~l~~~~p~~----~v~~VEidp~vi~ 104 (262)
T PRK04457 69 HILQIGLG-GGS-LAKFIYTYLPDT----RQTAVEINPQVIA 104 (262)
T ss_pred EEEEECCC-HhH-HHHHHHHhCCCC----eEEEEECCHHHHH
Confidence 36999998 374 657888888854 8999999998754
No 282
>PRK10742 putative methyltransferase; Provisional
Probab=80.34 E-value=3.4 Score=41.86 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=30.7
Q ss_pred CCCCCC--eEEEEcCCCCHhHHHHHhcCCCcEEEEecCC
Q 010086 113 YLSQSA--KSLCVETQYGQDVFALKEIGVEDSIGIFKKS 149 (518)
Q Consensus 113 ll~~~~--rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~ 149 (518)
.+++|. +|||+=+|+|..+..++..|. .|++++.++
T Consensus 83 glk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p 120 (250)
T PRK10742 83 GIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNP 120 (250)
T ss_pred CCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCH
Confidence 357777 899999999999998988884 599999873
No 283
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=80.17 E-value=3.6 Score=39.32 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=38.7
Q ss_pred cCCCChhhhhhhhhcccccCCcccccccCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccch
Q 010086 289 EEPLKPWITMKRNIKNIKYLPSMADISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFH 361 (518)
Q Consensus 289 E~~~~~~~~~~~~~~~~~ylp~~~d~s~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~ 361 (518)
..|..+|...+++....-.+ ..++ ++..++|+|++. |. ++-.+...+|.. +|+++|.++...
T Consensus 18 ~~~~~~~~~~~~~~~d~i~~--~~~~---~~~~vLDiGcGt-G~-~s~~la~~~~~~----~V~~iD~s~~~~ 79 (181)
T TIGR00138 18 TSLKTPEEIWERHILDSLKL--LEYL---DGKKVIDIGSGA-GF-PGIPLAIARPEL----KLTLLESNHKKV 79 (181)
T ss_pred cccCCHHHHHHHHHHHHHHH--HHhc---CCCeEEEecCCC-Cc-cHHHHHHHCCCC----eEEEEeCcHHHH
Confidence 45566666666665543211 0111 256899999994 74 434666677743 799999999743
No 284
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=80.11 E-value=3.1 Score=45.15 Aligned_cols=88 Identities=10% Similarity=-0.009 Sum_probs=52.8
Q ss_pred CCCCCCCeEEEEcCCC-CHhH-HHHHhcCCCcEEEEecCCCCCcEEecc-CCCCCCC--CCceeEEEEcCceeeccCChH
Q 010086 112 GYLSQSAKSLCVETQY-GQDV-FALKEIGVEDSIGIFKKSSKPLVISGE-GHRIPFD--GNTFDFVFVGGARLEKASKPL 186 (518)
Q Consensus 112 gll~~~~rvLDVGcGt-G~~~-~~L~~~g~~~v~gID~s~~~~l~~~~d-a~~LPf~--D~SFD~V~s~~~~l~~~~dp~ 186 (518)
+.+-+|.+|+-+|+|. |..+ ..++..| .+|+.+|.++........+ +...+.. -..+|+|+.... .+.
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~ak~~G-a~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~atG------~~~ 269 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQG-ARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTTG------NKD 269 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECCC------CHH
Confidence 5556899999999998 7655 4455577 4899999875321100000 0000110 024699987543 233
Q ss_pred HHHHHHHhcccCCcEEEEEe
Q 010086 187 DFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 187 ~~l~Ei~RVLKPGG~lvi~~ 206 (518)
.+-.+..+.+||||+++..-
T Consensus 270 ~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 270 IITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred HHHHHHHhcCCCCcEEEEeC
Confidence 33345689999999887753
No 285
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=79.73 E-value=4.8 Score=42.17 Aligned_cols=90 Identities=10% Similarity=0.123 Sum_probs=54.1
Q ss_pred HHcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCCC---------cEEeccCCC----C-CCCCCceeEE
Q 010086 109 ISEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSKP---------LVISGEGHR----I-PFDGNTFDFV 172 (518)
Q Consensus 109 ~~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~~---------l~~~~da~~----L-Pf~D~SFD~V 172 (518)
.....++++.+||-.|+|. |..+..+++ .|...|+++|.++... .++....++ + ...++.+|+|
T Consensus 184 ~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~v 263 (371)
T cd08281 184 VNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYA 263 (371)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEE
Confidence 3445578899999999876 555554544 5754799998764210 111111110 0 0112358988
Q ss_pred EEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 173 FVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 173 ~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
+.... -...+.+..+.|++||.+++.
T Consensus 264 id~~G-------~~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 264 FEMAG-------SVPALETAYEITRRGGTTVTA 289 (371)
T ss_pred EECCC-------ChHHHHHHHHHHhcCCEEEEE
Confidence 86542 124578889999999998764
No 286
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=79.48 E-value=8.3 Score=42.09 Aligned_cols=98 Identities=11% Similarity=0.073 Sum_probs=56.6
Q ss_pred CCCCCCCeEEEEcCCC-CHhH-HHHHhcCCCcEEEEecCCCCCcEEecc-CCCCCCC--CCceeEEEEcCceeeccCChH
Q 010086 112 GYLSQSAKSLCVETQY-GQDV-FALKEIGVEDSIGIFKKSSKPLVISGE-GHRIPFD--GNTFDFVFVGGARLEKASKPL 186 (518)
Q Consensus 112 gll~~~~rvLDVGcGt-G~~~-~~L~~~g~~~v~gID~s~~~~l~~~~d-a~~LPf~--D~SFD~V~s~~~~l~~~~dp~ 186 (518)
+..-.|.+|+-+|+|. |..+ ..++..| .+|+.+|.++........+ ..-.++. -...|+|+..-. ++
T Consensus 207 ~~~l~Gk~VlViG~G~IG~~vA~~lr~~G-a~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aTG------~~- 278 (425)
T PRK05476 207 NVLIAGKVVVVAGYGDVGKGCAQRLRGLG-ARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTATG------NK- 278 (425)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECCC------CH-
Confidence 3444789999999998 6544 4555677 4899999865321100000 0001111 135799987542 22
Q ss_pred HHH-HHHHhcccCCcEEEEEecCCCccCchhH
Q 010086 187 DFA-SEIVRTLKPEGFAVVHVRAKDEYSFNSF 217 (518)
Q Consensus 187 ~~l-~Ei~RVLKPGG~lvi~~~~~~~~s~~~~ 217 (518)
..+ .+..+.+|+|++++..-..+...+...+
T Consensus 279 ~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L 310 (425)
T PRK05476 279 DVITAEHMEAMKDGAILANIGHFDNEIDVAAL 310 (425)
T ss_pred HHHHHHHHhcCCCCCEEEEcCCCCCccChHHH
Confidence 244 4889999999988776433333333333
No 287
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=79.47 E-value=4.8 Score=39.82 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=30.8
Q ss_pred hhHHHHHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEec
Q 010086 92 KEWIKAVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFK 147 (518)
Q Consensus 92 ~~wr~~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~ 147 (518)
.||.+ +|+..+..+- ..-...|||||-|.+...|+.. .-.-++|+++
T Consensus 45 mDWS~---~yp~f~~~~~------~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEI 92 (249)
T KOG3115|consen 45 MDWSK---YYPDFRRALN------KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEI 92 (249)
T ss_pred CcHHH---hhhhhhhhcc------ccceEEeeccCccchhhhccccCccceeeeehh
Confidence 56655 3555554332 3346899999999988777653 2346788876
No 288
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=78.93 E-value=3.2 Score=41.85 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=41.0
Q ss_pred CCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhc----cCCceEEEeec
Q 010086 317 KNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYK----VKKKVKLLPYA 376 (518)
Q Consensus 317 ~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~----~~~~V~~~~~A 376 (518)
.++..+||+|+| .|. ++..+.+.. + .++++|.|+.+.+.+. ..+++++++.-
T Consensus 29 ~~~~~VlEiGpG-~G~-lT~~L~~~~-~-----~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D 84 (262)
T PF00398_consen 29 SEGDTVLEIGPG-PGA-LTRELLKRG-K-----RVIAVEIDPDLAKHLKERFASNPNVEVINGD 84 (262)
T ss_dssp GTTSEEEEESST-TSC-CHHHHHHHS-S-----EEEEEESSHHHHHHHHHHCTTCSSEEEEES-
T ss_pred CCCCEEEEeCCC-Ccc-chhhHhccc-C-----cceeecCcHhHHHHHHHHhhhcccceeeecc
Confidence 378999999999 684 777777655 2 7999999999876554 46899999863
No 289
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=78.74 E-value=6.3 Score=42.75 Aligned_cols=92 Identities=15% Similarity=0.222 Sum_probs=57.9
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHh--cCCCcEEEEecCCCC---------------CcEEeccCCCCC---CCCCceeEEE
Q 010086 114 LSQSAKSLCVETQYGQDVFALKE--IGVEDSIGIFKKSSK---------------PLVISGEGHRIP---FDGNTFDFVF 173 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~--~g~~~v~gID~s~~~---------------~l~~~~da~~LP---f~D~SFD~V~ 173 (518)
.++|.||||+.+-+|.-+...+. .+.+.+++.|.+... -.+...|+.++| |+. +||-|+
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence 46799999999999876655443 123578999976321 113456776665 666 999998
Q ss_pred ----EcCce-ee------ccC----------ChHHHHHHHHhcccCCcEEEEEe
Q 010086 174 ----VGGAR-LE------KAS----------KPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 174 ----s~~~~-l~------~~~----------dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
|++.. .. ... -..+.+..+.-.+||||+++-.+
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 44410 11 000 01245666777899999988764
No 290
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=78.06 E-value=2.2 Score=43.83 Aligned_cols=37 Identities=5% Similarity=-0.292 Sum_probs=24.6
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecC
Q 010086 112 GYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKK 148 (518)
Q Consensus 112 gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s 148 (518)
...-.+.+|||+|||+|..-......|...+...|.+
T Consensus 112 ~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~n 148 (282)
T KOG2920|consen 112 QMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFN 148 (282)
T ss_pred heEecCceeEecCCcccccchhhhhhccceeeeEecc
Confidence 3445688999999999876644444443455556654
No 291
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=78.02 E-value=2.8 Score=43.52 Aligned_cols=84 Identities=13% Similarity=0.166 Sum_probs=50.5
Q ss_pred CCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCC-CC----------CcEEeccCCCC--CCCCCceeEEEEcCce
Q 010086 114 LSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKS-SK----------PLVISGEGHRI--PFDGNTFDFVFVGGAR 178 (518)
Q Consensus 114 l~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~-~~----------~l~~~~da~~L--Pf~D~SFD~V~s~~~~ 178 (518)
++++.+||-+|+|. |..+..+++ .|. ++++++.++ ++ ...+....++. .-..+.||+|+....
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g- 247 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATG- 247 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcC-
Confidence 46789999999986 666644444 564 799998632 10 00111000000 001235898887653
Q ss_pred eeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 179 LEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 179 l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
....+.+..++|||||.+++.
T Consensus 248 ------~~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 248 ------VPPLAFEALPALAPNGVVILF 268 (355)
T ss_pred ------CHHHHHHHHHHccCCcEEEEE
Confidence 123678999999999998764
No 292
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=76.14 E-value=2.7 Score=41.12 Aligned_cols=54 Identities=24% Similarity=0.161 Sum_probs=38.6
Q ss_pred cccCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhc------cCCceEEEee
Q 010086 314 ISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYK------VKKKVKLLPY 375 (518)
Q Consensus 314 ~s~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~------~~~~V~~~~~ 375 (518)
|+...++++.|+||++ | +-+.|..+|-. +|+|+|-||..+.... +..||.++.-
T Consensus 28 i~~va~d~~~DLGaGs-G--iLs~~Aa~~A~-----rViAiE~dPk~a~~a~eN~~v~g~~n~evv~g 87 (252)
T COG4076 28 IAEVAEDTFADLGAGS-G--ILSVVAAHAAE-----RVIAIEKDPKRARLAEENLHVPGDVNWEVVVG 87 (252)
T ss_pred HHHHhhhceeeccCCc-c--hHHHHHHhhhc-----eEEEEecCcHHHHHhhhcCCCCCCcceEEEec
Confidence 4556789999999985 6 34889988854 7999999998653222 3346666553
No 293
>PLN02740 Alcohol dehydrogenase-like
Probab=74.90 E-value=12 Score=39.39 Aligned_cols=89 Identities=16% Similarity=0.190 Sum_probs=53.3
Q ss_pred HcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCC------C-CCCCCceeE
Q 010086 110 SEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHR------I-PFDGNTFDF 171 (518)
Q Consensus 110 ~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~------L-Pf~D~SFD~ 171 (518)
....++++++||-+|+|. |..+..+++ .|...|+++|.++.. ..++.....+ + .+..+.||+
T Consensus 192 ~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dv 271 (381)
T PLN02740 192 NTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDY 271 (381)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCE
Confidence 445578899999999886 665544444 574479999876421 1111111000 0 011225899
Q ss_pred EEEcCceeeccCChHHHHHHHHhcccCC-cEEEEE
Q 010086 172 VFVGGARLEKASKPLDFASEIVRTLKPE-GFAVVH 205 (518)
Q Consensus 172 V~s~~~~l~~~~dp~~~l~Ei~RVLKPG-G~lvi~ 205 (518)
|+.... ....+.+..+.+++| |.+++.
T Consensus 272 vid~~G-------~~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 272 SFECAG-------NVEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred EEECCC-------ChHHHHHHHHhhhcCCCEEEEE
Confidence 887653 124577888899997 887654
No 294
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=74.67 E-value=2.6 Score=41.33 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=25.7
Q ss_pred ccCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccch
Q 010086 315 SFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFH 361 (518)
Q Consensus 315 s~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~ 361 (518)
.+++.+||+|+|+| .|..+ -...-+++++ ..+.+|.+|.++
T Consensus 39 ~l~~~dvF~DlGSG-~G~~v-~~aal~~~~~----~~~GIEi~~~~~ 79 (205)
T PF08123_consen 39 NLTPDDVFYDLGSG-VGNVV-FQAALQTGCK----KSVGIEILPELH 79 (205)
T ss_dssp T--TT-EEEEES-T-TSHHH-HHHHHHH--S----EEEEEE-SHHHH
T ss_pred CCCCCCEEEECCCC-CCHHH-HHHHHHcCCc----EEEEEEechHHH
Confidence 35789999999999 69755 3444455664 699999999864
No 295
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=74.09 E-value=5.2 Score=40.02 Aligned_cols=52 Identities=19% Similarity=0.283 Sum_probs=38.8
Q ss_pred cCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhc----cCCceEEEee
Q 010086 316 FKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYK----VKKKVKLLPY 375 (518)
Q Consensus 316 ~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~----~~~~V~~~~~ 375 (518)
..+...++|+|+| .|. ++..+.+.++ .|+++|.|+.+.+... ..++|+++..
T Consensus 27 ~~~~~~VLEiG~G-~G~-lt~~L~~~~~------~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~ 82 (253)
T TIGR00755 27 VLEGDVVLEIGPG-LGA-LTEPLLKRAK------KVTAIEIDPRLAEILRKLLSLYERLEVIEG 82 (253)
T ss_pred CCCcCEEEEeCCC-CCH-HHHHHHHhCC------cEEEEECCHHHHHHHHHHhCcCCcEEEEEC
Confidence 3467899999999 585 7678877775 4999999999865433 2467777664
No 296
>PLN02827 Alcohol dehydrogenase-like
Probab=73.99 E-value=6.5 Score=41.57 Aligned_cols=88 Identities=17% Similarity=0.182 Sum_probs=52.1
Q ss_pred cCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccC------CCC-CCCCCceeEE
Q 010086 111 EGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEG------HRI-PFDGNTFDFV 172 (518)
Q Consensus 111 ~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da------~~L-Pf~D~SFD~V 172 (518)
.+-++++.+||-.|+|+ |..+..+++ .|...++++|.++.. ..++.... +.+ ....+.+|+|
T Consensus 188 ~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~v 267 (378)
T PLN02827 188 VADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYS 267 (378)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEE
Confidence 34568899999999876 666544444 675568888865311 00111000 000 0112258988
Q ss_pred EEcCceeeccCChHHHHHHHHhcccCC-cEEEEE
Q 010086 173 FVGGARLEKASKPLDFASEIVRTLKPE-GFAVVH 205 (518)
Q Consensus 173 ~s~~~~l~~~~dp~~~l~Ei~RVLKPG-G~lvi~ 205 (518)
+.... ....+.+..+.|++| |++++.
T Consensus 268 id~~G-------~~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 268 FECVG-------DTGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred EECCC-------ChHHHHHHHHhhccCCCEEEEE
Confidence 87543 123577888999999 998763
No 297
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=73.65 E-value=5.1 Score=40.69 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=38.3
Q ss_pred cCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhcc---CCceEEEee
Q 010086 316 FKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYKV---KKKVKLLPY 375 (518)
Q Consensus 316 ~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~~---~~~V~~~~~ 375 (518)
.+++..++|+|+| -|. ++..+.+..+ +|+++|.||.+.+.... .++++++..
T Consensus 40 ~~~~~~VLEiG~G-~G~-lt~~L~~~~~------~v~avE~d~~~~~~~~~~~~~~~v~~i~~ 94 (272)
T PRK00274 40 PQPGDNVLEIGPG-LGA-LTEPLLERAA------KVTAVEIDRDLAPILAETFAEDNLTIIEG 94 (272)
T ss_pred CCCcCeEEEeCCC-ccH-HHHHHHHhCC------cEEEEECCHHHHHHHHHhhccCceEEEEC
Confidence 3567789999999 484 7677777654 69999999998665432 257777765
No 298
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=73.60 E-value=25 Score=33.97 Aligned_cols=127 Identities=15% Similarity=0.102 Sum_probs=71.3
Q ss_pred CceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhc------cCCceEEEeece-e-----ecCCceE
Q 010086 318 NRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYK------VKKKVKLLPYAA-W-----VRNETLS 385 (518)
Q Consensus 318 ~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~------~~~~V~~~~~Av-~-----~~~~tl~ 385 (518)
+...++|+|++ -|. .+..+.+.+|.. .|+++|+++...+.-. ..++|+++...+ - ..++++.
T Consensus 40 ~~~~VLDiGcG-tG~-~~~~la~~~p~~----~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D 113 (202)
T PRK00121 40 DAPIHLEIGFG-KGE-FLVEMAKANPDI----NFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLD 113 (202)
T ss_pred CCCeEEEEccC-CCH-HHHHHHHHCCCc----cEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccc
Confidence 56789999999 485 435666777743 7999999998644321 236777666432 0 0111111
Q ss_pred EEecCCCCcchhhcccCCccccccccCCCCCCCCCcceeecccHHHHHhhcCCCCCeEEEEeeccchhhhhHHHHHhcCC
Q 010086 386 FQINHDPDKEVVVKGRGMGRIQPVQSLSDGGFDGEVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFETGA 465 (518)
Q Consensus 386 f~~~~~~~~~~~~~~~g~~~i~p~~~~~~~~~~g~~~~v~~vd~s~wl~~~v~~~D~VVlKMDIEGaE~~vL~~l~~~g~ 465 (518)
.....-+ .|..... ........-++.+-+.+.+++.-.+++..|.++.-.++++.|-+.|.
T Consensus 114 ~V~~~~~--------------~p~~~~~-----~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~ 174 (202)
T PRK00121 114 RIYLNFP--------------DPWPKKR-----HHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGG 174 (202)
T ss_pred eEEEECC--------------CCCCCcc-----ccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcc
Confidence 1000000 0000000 00000112233444444577778888999999888889999988886
Q ss_pred cccc
Q 010086 466 ICLI 469 (518)
Q Consensus 466 i~~I 469 (518)
-+.+
T Consensus 175 ~~~~ 178 (202)
T PRK00121 175 FLVS 178 (202)
T ss_pred cccc
Confidence 5553
No 299
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=73.31 E-value=9.5 Score=38.28 Aligned_cols=85 Identities=15% Similarity=0.153 Sum_probs=50.6
Q ss_pred CCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCCC---------cEEecc--CCCC-CC-CCCceeEEEEcCce
Q 010086 114 LSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSKP---------LVISGE--GHRI-PF-DGNTFDFVFVGGAR 178 (518)
Q Consensus 114 l~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~~---------l~~~~d--a~~L-Pf-~D~SFD~V~s~~~~ 178 (518)
..++.+||-+|+|+ |..+..+++ .|...|+++|.++... .++..+ ...+ .. ....+|+|+....
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G- 196 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSG- 196 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCC-
Confidence 35889999999876 655544444 5755588888653210 011100 0000 01 1235888887542
Q ss_pred eeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 179 LEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 179 l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
....+.+..+.|+|||.+++.
T Consensus 197 ------~~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 197 ------ATAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred ------ChHHHHHHHHHhcCCCEEEEe
Confidence 124678889999999998765
No 300
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=73.31 E-value=5.4 Score=40.62 Aligned_cols=58 Identities=16% Similarity=0.054 Sum_probs=44.2
Q ss_pred eEEEEcCCCCHhHHHHHhcCCCcEEEEecCC---------CCCcEEeccCCCCCCC--CCceeEEEEcC
Q 010086 119 KSLCVETQYGQDVFALKEIGVEDSIGIFKKS---------SKPLVISGEGHRIPFD--GNTFDFVFVGG 176 (518)
Q Consensus 119 rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~---------~~~l~~~~da~~LPf~--D~SFD~V~s~~ 176 (518)
+++|+-||.|.....|.+.|+..+.++|+++ .+.....+|..++.-. ...+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCC
Confidence 6899999999999999988987889999874 2334556777776432 35699999654
No 301
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=72.52 E-value=40 Score=34.33 Aligned_cols=90 Identities=18% Similarity=0.177 Sum_probs=52.9
Q ss_pred HHHcCCCCCCCeEEEEcCCC-CHhHHHHH-hcCCCcEEEEecCCCC---------CcEEecc---CCCCCCCCCceeEEE
Q 010086 108 LISEGYLSQSAKSLCVETQY-GQDVFALK-EIGVEDSIGIFKKSSK---------PLVISGE---GHRIPFDGNTFDFVF 173 (518)
Q Consensus 108 L~~~gll~~~~rvLDVGcGt-G~~~~~L~-~~g~~~v~gID~s~~~---------~l~~~~d---a~~LPf~D~SFD~V~ 173 (518)
+...+.+ ++.+||..|+|. |..+..++ ..|...+++++.++.. ..++... ...+.-..+.||+|+
T Consensus 158 l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vl 236 (339)
T cd08232 158 VNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVF 236 (339)
T ss_pred HHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEE
Confidence 3334455 789999988875 55554444 4675478888765310 0111111 111211223489988
Q ss_pred EcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 174 VGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 174 s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
.... . ...++++.+.|+++|+++..
T Consensus 237 d~~g-~------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 237 EASG-A------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred ECCC-C------HHHHHHHHHHHhcCCEEEEE
Confidence 7542 1 24578999999999998764
No 302
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=72.30 E-value=9.9 Score=32.46 Aligned_cols=40 Identities=33% Similarity=0.343 Sum_probs=30.2
Q ss_pred CCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchH
Q 010086 317 KNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 317 ~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~ 362 (518)
.+...++|+|++ .|. .+..+.+.+|.. +|+++|.++...+
T Consensus 18 ~~~~~vldlG~G-~G~-~~~~l~~~~~~~----~v~~vD~s~~~~~ 57 (124)
T TIGR02469 18 RPGDVLWDIGAG-SGS-ITIEAARLVPNG----RVYAIERNPEALR 57 (124)
T ss_pred CCCCEEEEeCCC-CCH-HHHHHHHHCCCc----eEEEEcCCHHHHH
Confidence 346689999998 475 546777777742 7999999998654
No 303
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=72.14 E-value=23 Score=36.66 Aligned_cols=89 Identities=18% Similarity=0.140 Sum_probs=52.6
Q ss_pred HHHcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCCCCC-----------C
Q 010086 108 LISEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHRIPF-----------D 165 (518)
Q Consensus 108 L~~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~LPf-----------~ 165 (518)
+...+.+.++.+||-.|+|. |..+..+++ .|..++++++.++.. ..++ +....++ +
T Consensus 169 l~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi--~~~~~~~~~~~~~i~~~~~ 246 (361)
T cd08231 169 LDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATI--DIDELPDPQRRAIVRDITG 246 (361)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEE--cCcccccHHHHHHHHHHhC
Confidence 33445556889999998765 554444443 564488888754310 0111 1111111 1
Q ss_pred CCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 166 GNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 166 D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
...+|+|+.... ....+.+..+.|+++|+++..
T Consensus 247 ~~~~d~vid~~g-------~~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 247 GRGADVVIEASG-------HPAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred CCCCcEEEECCC-------ChHHHHHHHHHhccCCEEEEE
Confidence 245899987542 123578889999999998764
No 304
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=71.64 E-value=9.3 Score=38.94 Aligned_cols=47 Identities=15% Similarity=0.060 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhc------CCCcEEEEecC
Q 010086 102 SSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEI------GVEDSIGIFKK 148 (518)
Q Consensus 102 ~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~------g~~~v~gID~s 148 (518)
++++..|.+.|++.++..++++|||.|.++..+.+. +...++-||..
T Consensus 4 sSli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 4 SSLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 467888889999999999999999999999887752 23467778864
No 305
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=71.37 E-value=13 Score=39.36 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=28.9
Q ss_pred EEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchH
Q 010086 321 VYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 321 V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~ 362 (518)
-++|+|++ .|. ++.++.+.+|.. +|+++|.|+...+
T Consensus 199 ~VLDlGCG-~G~-ls~~la~~~p~~----~v~~vDis~~Al~ 234 (342)
T PRK09489 199 KVLDVGCG-AGV-LSAVLARHSPKI----RLTLSDVSAAALE 234 (342)
T ss_pred eEEEeccC-cCH-HHHHHHHhCCCC----EEEEEECCHHHHH
Confidence 49999999 484 667888889854 7999999987543
No 306
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=71.10 E-value=3.6 Score=39.05 Aligned_cols=30 Identities=13% Similarity=0.030 Sum_probs=24.4
Q ss_pred eEEEEcCCCCHhHHHHHhcCCCcEEEEecCC
Q 010086 119 KSLCVETQYGQDVFALKEIGVEDSIGIFKKS 149 (518)
Q Consensus 119 rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~ 149 (518)
.|+|+.||.|..+..+++.. ..|++||+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~-~~Viaidid~ 31 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF-DRVIAIDIDP 31 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-H
T ss_pred EEEEeccCcCHHHHHHHHhC-CeEEEEECCH
Confidence 68999999999999999874 7999999874
No 307
>PRK04266 fibrillarin; Provisional
Probab=70.60 E-value=8.3 Score=38.33 Aligned_cols=54 Identities=22% Similarity=0.221 Sum_probs=37.0
Q ss_pred cccCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhh----ccCCceEEE
Q 010086 314 ISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEY----KVKKKVKLL 373 (518)
Q Consensus 314 ~s~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~----~~~~~V~~~ 373 (518)
+..+++..++|+|++. |. ++..+.+.++.. .||++|.+|...+.+ +..+||+++
T Consensus 68 l~i~~g~~VlD~G~G~-G~-~~~~la~~v~~g----~V~avD~~~~ml~~l~~~a~~~~nv~~i 125 (226)
T PRK04266 68 FPIKKGSKVLYLGAAS-GT-TVSHVSDIVEEG----VVYAVEFAPRPMRELLEVAEERKNIIPI 125 (226)
T ss_pred CCCCCCCEEEEEccCC-CH-HHHHHHHhcCCC----eEEEEECCHHHHHHHHHHhhhcCCcEEE
Confidence 4566888999999994 75 556777777632 799999999644322 233555544
No 308
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=70.23 E-value=21 Score=37.47 Aligned_cols=87 Identities=13% Similarity=0.095 Sum_probs=51.0
Q ss_pred cCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCCCc----------EEec-cCCCCCCCCCceeEEEEcCc
Q 010086 111 EGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSKPL----------VISG-EGHRIPFDGNTFDFVFVGGA 177 (518)
Q Consensus 111 ~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~~l----------~~~~-da~~LPf~D~SFD~V~s~~~ 177 (518)
.+.++++.+||-.|+|. |..+..+++ .| .++++++.++.... ++.. +...+.-..+.+|+|+....
T Consensus 178 ~~~~~~g~~VlV~G~G~vG~~avq~Ak~~G-a~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g 256 (360)
T PLN02586 178 YGMTEPGKHLGVAGLGGLGHVAVKIGKAFG-LKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS 256 (360)
T ss_pred hcccCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC
Confidence 34457889999999986 666655544 56 57888876542110 1100 00000000024788886532
Q ss_pred eeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 178 RLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
. ...+.+..+.||+||.++..
T Consensus 257 ------~-~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 257 ------A-VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred ------C-HHHHHHHHHHhcCCcEEEEe
Confidence 1 23578899999999998764
No 309
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=70.05 E-value=25 Score=34.52 Aligned_cols=124 Identities=13% Similarity=0.175 Sum_probs=67.6
Q ss_pred EEEEcCCCCHhHHHHHhcCC-CcEEEEecCCCC----------------CcEEeccCCCCCCCCCc-eeEEEEcCceeec
Q 010086 120 SLCVETQYGQDVFALKEIGV-EDSIGIFKKSSK----------------PLVISGEGHRIPFDGNT-FDFVFVGGARLEK 181 (518)
Q Consensus 120 vLDVGcGtG~~~~~L~~~g~-~~v~gID~s~~~----------------~l~~~~da~~LPf~D~S-FD~V~s~~~~l~~ 181 (518)
+.||||-.|.+..+|.+.|. ..++++|+++.| ..+..+|+-+ +++.+. .|.|+..+. --
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGM--GG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGM--GG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE---H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecC--CH
Confidence 68999999999999988774 479999998521 1234677644 344443 788887763 11
Q ss_pred cCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEEeccCCCCCCccceeEEEEeeccc
Q 010086 182 ASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSSLPYIREIVLKKESD 252 (518)
Q Consensus 182 ~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~v~~~~~~~p~~~~vv~kK~~~ 252 (518)
.--.+.+.+....++..-.++++..+ ..+.++.++. -++|.++.-.-+.. +.. +|..++..+...
T Consensus 78 -~lI~~ILe~~~~~~~~~~~lILqP~~-~~~~LR~~L~-~~gf~I~~E~lv~e-~~~--~YeIi~~~~~~~ 142 (205)
T PF04816_consen 78 -ELIIEILEAGPEKLSSAKRLILQPNT-HAYELRRWLY-ENGFEIIDEDLVEE-NGR--FYEIIVAERGEE 142 (205)
T ss_dssp -HHHHHHHHHTGGGGTT--EEEEEESS--HHHHHHHHH-HTTEEEEEEEEEEE-TTE--EEEEEEEEESSS
T ss_pred -HHHHHHHHhhHHHhccCCeEEEeCCC-ChHHHHHHHH-HCCCEEEEeEEEeE-CCE--EEEEEEEEeCCC
Confidence 00234566666777766678887643 2322233322 25677776554421 122 455566666533
No 310
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=69.32 E-value=5.1 Score=43.03 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=35.4
Q ss_pred CCCCceeEEEEcCceeeccCCh--HHHHHHHHhcccCCcEEEEEe
Q 010086 164 FDGNTFDFVFVGGARLEKASKP--LDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 164 f~D~SFD~V~s~~~~l~~~~dp--~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
.+++++|.++-+.. ++++++. .+.++++.|++||||+++.-.
T Consensus 291 ~~~~s~~~~vL~D~-~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 291 LPPGSFDRFVLSDH-MDWMDPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CCCCCeeEEEecch-hhhCCHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 57899999999886 8888753 356899999999999999864
No 311
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=69.03 E-value=3.8 Score=43.32 Aligned_cols=52 Identities=33% Similarity=0.420 Sum_probs=34.0
Q ss_pred hhcccccCCccccc-ccCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCcc
Q 010086 301 NIKNIKYLPSMADI-SFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKT 359 (518)
Q Consensus 301 ~~~~~~ylp~~~d~-s~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~ 359 (518)
|.|..-|--..+.- +-=.++|++|+||++ | |-++|..+-... .|||+|++.-
T Consensus 159 YVRTgTY~~Ail~N~sDF~~kiVlDVGaGS-G--ILS~FAaqAGA~----~vYAvEAS~M 211 (517)
T KOG1500|consen 159 YVRTGTYQRAILENHSDFQDKIVLDVGAGS-G--ILSFFAAQAGAK----KVYAVEASEM 211 (517)
T ss_pred HHhhhHHHHHHHhcccccCCcEEEEecCCc-c--HHHHHHHHhCcc----eEEEEehhHH
Confidence 44444443333322 223689999999985 5 558998765543 8999999863
No 312
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=68.82 E-value=4 Score=44.83 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=32.4
Q ss_pred CceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHh---h-c--c-CCceEEEee
Q 010086 318 NRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEE---Y-K--V-KKKVKLLPY 375 (518)
Q Consensus 318 ~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~---~-~--~-~~~V~~~~~ 375 (518)
++.|++|+|||. |- +..+..+.--..+...+|||+|.||..... . + + ...|++++.
T Consensus 186 ~~~vVldVGAGr-Gp-L~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~ 248 (448)
T PF05185_consen 186 KDKVVLDVGAGR-GP-LSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHG 248 (448)
T ss_dssp TT-EEEEES-TT-SH-HHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES
T ss_pred cceEEEEeCCCc-cH-HHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeC
Confidence 468999999994 85 423333311111234589999999974322 2 2 2 267888885
No 313
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=68.11 E-value=16 Score=39.66 Aligned_cols=100 Identities=11% Similarity=0.155 Sum_probs=56.4
Q ss_pred CCCCCCCeEEEEcCCC-CHhH-HHHHhcCCCcEEEEecCCCCCcEEeccC-CCCCCC--CCceeEEEEcCceeeccCChH
Q 010086 112 GYLSQSAKSLCVETQY-GQDV-FALKEIGVEDSIGIFKKSSKPLVISGEG-HRIPFD--GNTFDFVFVGGARLEKASKPL 186 (518)
Q Consensus 112 gll~~~~rvLDVGcGt-G~~~-~~L~~~g~~~v~gID~s~~~~l~~~~da-~~LPf~--D~SFD~V~s~~~~l~~~~dp~ 186 (518)
++...|.+|+-+|+|. |..+ ..++..| .+|+.+|.++........+. .-.+.. -...|+|++.-. .+
T Consensus 190 ~~~l~Gk~VvViG~G~IG~~vA~~ak~~G-a~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVItaTG------~~- 261 (406)
T TIGR00936 190 NLLIAGKTVVVAGYGWCGKGIAMRARGMG-ARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITATG------NK- 261 (406)
T ss_pred CCCCCcCEEEEECCCHHHHHHHHHHhhCc-CEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEECCC------CH-
Confidence 4456789999999998 6655 4445567 58999987653211000000 000110 024588887542 22
Q ss_pred HHH-HHHHhcccCCcEEEEEecCCCccCchhHhh
Q 010086 187 DFA-SEIVRTLKPEGFAVVHVRAKDEYSFNSFLD 219 (518)
Q Consensus 187 ~~l-~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~ 219 (518)
..+ .+....+|||++++..-......+...+.+
T Consensus 262 ~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~ 295 (406)
T TIGR00936 262 DVIRGEHFENMKDGAIVANIGHFDVEIDVKALEE 295 (406)
T ss_pred HHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHH
Confidence 334 468899999998877532222234344433
No 314
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=67.87 E-value=5.7 Score=40.31 Aligned_cols=37 Identities=11% Similarity=-0.048 Sum_probs=22.3
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHH-hcCCCcEEEEecCC
Q 010086 113 YLSQSAKSLCVETQYGQDVFALK-EIGVEDSIGIFKKS 149 (518)
Q Consensus 113 ll~~~~rvLDVGcGtG~~~~~L~-~~g~~~v~gID~s~ 149 (518)
.+.+..+|+|||||.--++..+- ...-..++|+|++.
T Consensus 102 ~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~ 139 (251)
T PF07091_consen 102 RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDS 139 (251)
T ss_dssp CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBH
T ss_pred cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCH
Confidence 46668999999999766653332 22235899999874
No 315
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=67.83 E-value=9.9 Score=37.12 Aligned_cols=49 Identities=22% Similarity=0.127 Sum_probs=34.3
Q ss_pred CCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhccCCceEEEee
Q 010086 317 KNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYKVKKKVKLLPY 375 (518)
Q Consensus 317 ~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~~~~~V~~~~~ 375 (518)
+++..++|+|++ -|. ++.++.+..+.. -.|+++|.+|. ...++|+++..
T Consensus 50 ~~~~~VLDlG~G-tG~-~t~~l~~~~~~~---~~V~aVDi~~~-----~~~~~v~~i~~ 98 (209)
T PRK11188 50 KPGMTVVDLGAA-PGG-WSQYAVTQIGDK---GRVIACDILPM-----DPIVGVDFLQG 98 (209)
T ss_pred CCCCEEEEEccc-CCH-HHHHHHHHcCCC---ceEEEEecccc-----cCCCCcEEEec
Confidence 567789999999 474 656777765422 27999999983 23467776654
No 316
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=67.61 E-value=79 Score=32.38 Aligned_cols=89 Identities=13% Similarity=0.111 Sum_probs=52.6
Q ss_pred HcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCC-------C--CCCCCce
Q 010086 110 SEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHR-------I--PFDGNTF 169 (518)
Q Consensus 110 ~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~-------L--Pf~D~SF 169 (518)
..+.++++.++|-.|+|. |..+..+++ .|...++.++.++.. ..++..+... + ..++..|
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGP 235 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCC
Confidence 455678899999988765 555544544 564337777654210 0111111111 0 1234559
Q ss_pred eEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 170 DFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 170 D~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
|+|+.... ....+.++.+.|+++|.++..
T Consensus 236 d~vld~~g-------~~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 236 DVVIECTG-------AESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CEEEECCC-------CHHHHHHHHHHhhcCCEEEEE
Confidence 99997543 123678999999999998754
No 317
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=67.54 E-value=20 Score=36.37 Aligned_cols=89 Identities=11% Similarity=0.007 Sum_probs=52.0
Q ss_pred HcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCC----CCCCCCceeEEEE
Q 010086 110 SEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHR----IPFDGNTFDFVFV 174 (518)
Q Consensus 110 ~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~----LPf~D~SFD~V~s 174 (518)
...-+.++.++|..|+|. |..+..+++ .|...++.++.++.. ..++..+..+ ...++..+|+++.
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~ 232 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIE 232 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEE
Confidence 344567889999998753 555544443 564347777654210 0111111111 0113456899997
Q ss_pred cCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 175 GGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 175 ~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
... ....+.++.|.|+++|.++..
T Consensus 233 ~~~-------~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 233 ATG-------VPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred CCC-------ChHHHHHHHHHHhcCCEEEEE
Confidence 542 124688999999999998764
No 318
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=67.33 E-value=7.7 Score=42.38 Aligned_cols=29 Identities=14% Similarity=-0.019 Sum_probs=24.7
Q ss_pred eEEEEcCCCCHhHHHHHhcCCCcEEEEec
Q 010086 119 KSLCVETQYGQDVFALKEIGVEDSIGIFK 147 (518)
Q Consensus 119 rvLDVGcGtG~~~~~L~~~g~~~v~gID~ 147 (518)
.+||||+|||.++....+.|...|++++.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~Ev 97 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEV 97 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehh
Confidence 58999999999987777777678999885
No 319
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=67.21 E-value=11 Score=37.50 Aligned_cols=54 Identities=15% Similarity=0.280 Sum_probs=38.2
Q ss_pred cCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhc-cCCceEEEee
Q 010086 316 FKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYK-VKKKVKLLPY 375 (518)
Q Consensus 316 ~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~-~~~~V~~~~~ 375 (518)
.++...++|+|++ -|. ++.++.+.+|.. .|+++|++|...+.-. ..+++.++..
T Consensus 29 ~~~~~~vLDiGcG-~G~-~~~~la~~~~~~----~v~gvD~s~~~i~~a~~~~~~~~~~~~ 83 (258)
T PRK01683 29 LENPRYVVDLGCG-PGN-STELLVERWPAA----RITGIDSSPAMLAEARSRLPDCQFVEA 83 (258)
T ss_pred CcCCCEEEEEccc-CCH-HHHHHHHHCCCC----EEEEEECCHHHHHHHHHhCCCCeEEEC
Confidence 3556789999999 485 557888888854 8999999998654332 2355665543
No 320
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=67.17 E-value=12 Score=40.10 Aligned_cols=118 Identities=18% Similarity=0.124 Sum_probs=63.7
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhc-C----CCcEEEEecCCC--------------CCc-EEeccCCCC---------CC
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEI-G----VEDSIGIFKKSS--------------KPL-VISGEGHRI---------PF 164 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~-g----~~~v~gID~s~~--------------~~l-~~~~da~~L---------Pf 164 (518)
++|+++|||+++.+|.-+.+|-+. . .+.+++=|.+.. +.+ +...++... +.
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~ 232 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDK 232 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchh
Confidence 689999999999999877555542 1 125666665421 111 111111111 23
Q ss_pred CCCceeEEEE-----cCceeeccCChH-----------------HHHHHHHhcccCCcEEEEEe-cCC----CccCchhH
Q 010086 165 DGNTFDFVFV-----GGARLEKASKPL-----------------DFASEIVRTLKPEGFAVVHV-RAK----DEYSFNSF 217 (518)
Q Consensus 165 ~D~SFD~V~s-----~~~~l~~~~dp~-----------------~~l~Ei~RVLKPGG~lvi~~-~~~----~~~s~~~~ 217 (518)
.-..||=|++ ..+.+.+..+.. +.+.--.|.|||||.++-.+ +-+ +..-...+
T Consensus 233 ~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L 312 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEAL 312 (375)
T ss_pred hhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHH
Confidence 4456777764 333344433221 24556789999999998864 211 11111234
Q ss_pred hhhccCccEEEEec
Q 010086 218 LDLFNSCKLVKSRD 231 (518)
Q Consensus 218 ~~lf~~~~~v~~~~ 231 (518)
.++...++++-...
T Consensus 313 ~~~~~~~~lv~~~~ 326 (375)
T KOG2198|consen 313 QKVGGAVELVDVSG 326 (375)
T ss_pred HHhcCcccceeecc
Confidence 44556666665443
No 321
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=67.15 E-value=13 Score=35.16 Aligned_cols=53 Identities=25% Similarity=0.292 Sum_probs=35.8
Q ss_pred CCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhh----c--cCCceEEEee
Q 010086 317 KNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEY----K--VKKKVKLLPY 375 (518)
Q Consensus 317 ~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~----~--~~~~V~~~~~ 375 (518)
.+...++|+|++. |. ++..+.+.+|.. +|+++|.||...+.. . ...+|+++..
T Consensus 30 ~~~~~vLDiG~G~-G~-~~~~la~~~~~~----~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~ 88 (187)
T PRK08287 30 HRAKHLIDVGAGT-GS-VSIEAALQFPSL----QVTAIERNPDALRLIKENRQRFGCGNIDIIPG 88 (187)
T ss_pred CCCCEEEEECCcC-CH-HHHHHHHHCCCC----EEEEEECCHHHHHHHHHHHHHhCCCCeEEEec
Confidence 3566799999994 74 556677778743 899999999854321 1 2346766653
No 322
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=66.66 E-value=12 Score=38.78 Aligned_cols=84 Identities=8% Similarity=-0.009 Sum_probs=50.7
Q ss_pred CCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCCCcE--Eec-----cCCCCCCCCCceeEEEEcCceeecc
Q 010086 112 GYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSKPLV--ISG-----EGHRIPFDGNTFDFVFVGGARLEKA 182 (518)
Q Consensus 112 gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~~l~--~~~-----da~~LPf~D~SFD~V~s~~~~l~~~ 182 (518)
.-++++.+||-.|+|. |..+..+++ .| .++++++.++..-.. ..| +..+ ...+.+|.++....
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G-~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~--~~~~~~d~~i~~~~----- 232 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQG-ATVHVMTRGAAARRLALALGAASAGGAYD--TPPEPLDAAILFAP----- 232 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHhCCceeccccc--cCcccceEEEECCC-----
Confidence 4578899999999875 544444444 56 478888876421100 001 1111 11235787665432
Q ss_pred CChHHHHHHHHhcccCCcEEEEE
Q 010086 183 SKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 183 ~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
.+ ..+.+..+.|||||.+++.
T Consensus 233 -~~-~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 233 -AG-GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred -cH-HHHHHHHHhhCCCcEEEEE
Confidence 12 3688899999999998764
No 323
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=66.48 E-value=20 Score=35.37 Aligned_cols=88 Identities=14% Similarity=0.116 Sum_probs=46.3
Q ss_pred CCeEEEEcCCCCHhHHHHHh----c-CCCcEEEEecCC---------C-----CCcEEeccCCCC----CC----CCCce
Q 010086 117 SAKSLCVETQYGQDVFALKE----I-GVEDSIGIFKKS---------S-----KPLVISGEGHRI----PF----DGNTF 169 (518)
Q Consensus 117 ~~rvLDVGcGtG~~~~~L~~----~-g~~~v~gID~s~---------~-----~~l~~~~da~~L----Pf----~D~SF 169 (518)
.+.|+++|.-.|..+..+++ . +.++|+|||+.. . ...+++||.... +. ....-
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 46899999999887755443 3 346999999941 1 112456655432 11 12345
Q ss_pred eEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086 170 DFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 170 D~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
.+|+--. =|...+-.+.++-....++||+++++..
T Consensus 113 vlVilDs--~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 113 VLVILDS--SHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp EEEEESS------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred eEEEECC--CccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 5666543 2333455667777899999999999863
No 324
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=65.86 E-value=31 Score=35.31 Aligned_cols=86 Identities=21% Similarity=0.262 Sum_probs=50.8
Q ss_pred CCCCCCeEEEEcCCC-CHhHHHHH-hcCCCcEEEEecCCCC---------CcEEeccCC---CC-CC-CCCceeEEEEcC
Q 010086 113 YLSQSAKSLCVETQY-GQDVFALK-EIGVEDSIGIFKKSSK---------PLVISGEGH---RI-PF-DGNTFDFVFVGG 176 (518)
Q Consensus 113 ll~~~~rvLDVGcGt-G~~~~~L~-~~g~~~v~gID~s~~~---------~l~~~~da~---~L-Pf-~D~SFD~V~s~~ 176 (518)
.++++.+||-.|+|. |..+..++ ..|..+|++++.++.. ..++....+ .+ .. ++..+|+|+...
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~ 239 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECS 239 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECC
Confidence 467799999999875 55554444 4674448888865311 011111100 11 11 233689998754
Q ss_pred ceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 177 ARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
. ....+.+..+.|+++|.+++.
T Consensus 240 g-------~~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 240 G-------NTAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred C-------CHHHHHHHHHHhhcCCEEEEE
Confidence 2 123467888999999998764
No 325
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=65.28 E-value=19 Score=37.67 Aligned_cols=91 Identities=18% Similarity=0.203 Sum_probs=53.1
Q ss_pred HHHcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccC--C----CC-CCCCCce
Q 010086 108 LISEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEG--H----RI-PFDGNTF 169 (518)
Q Consensus 108 L~~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da--~----~L-Pf~D~SF 169 (518)
+...+.++++.+||-.|+|. |..+..+++ .|...|+++|.++.. ..++.... . .+ ......+
T Consensus 176 ~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~ 255 (365)
T cd08277 176 AWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGV 255 (365)
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCC
Confidence 33445678899999999875 555544444 575579999865311 01111100 0 00 0112358
Q ss_pred eEEEEcCceeeccCChHHHHHHHHhcccCC-cEEEEE
Q 010086 170 DFVFVGGARLEKASKPLDFASEIVRTLKPE-GFAVVH 205 (518)
Q Consensus 170 D~V~s~~~~l~~~~dp~~~l~Ei~RVLKPG-G~lvi~ 205 (518)
|+|+.... -...+.+..+.|+|| |.+++.
T Consensus 256 d~vid~~g-------~~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 256 DYSFECTG-------NADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred CEEEECCC-------ChHHHHHHHHhcccCCCEEEEE
Confidence 98886532 124678889999986 888765
No 326
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=64.06 E-value=12 Score=38.95 Aligned_cols=55 Identities=18% Similarity=0.080 Sum_probs=37.7
Q ss_pred cCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHh----hccCCceEEEee
Q 010086 316 FKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEE----YKVKKKVKLLPY 375 (518)
Q Consensus 316 ~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~----~~~~~~V~~~~~ 375 (518)
.+++.+||||+.| .|. -+..+.+.+|.. .+|++||-||...+. +....+++++..
T Consensus 17 ~~pg~~vlD~TlG-~GG-hS~~il~~~~~~---g~VigiD~D~~al~~ak~~L~~~~ri~~i~~ 75 (296)
T PRK00050 17 IKPDGIYVDGTFG-GGG-HSRAILERLGPK---GRLIAIDRDPDAIAAAKDRLKPFGRFTLVHG 75 (296)
T ss_pred CCCCCEEEEeCcC-ChH-HHHHHHHhCCCC---CEEEEEcCCHHHHHHHHHhhccCCcEEEEeC
Confidence 3577899999998 454 445777777632 279999999986543 222346777664
No 327
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=63.64 E-value=13 Score=37.94 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=40.5
Q ss_pred cCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhc----cCCceEEEee
Q 010086 316 FKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYK----VKKKVKLLPY 375 (518)
Q Consensus 316 ~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~----~~~~V~~~~~ 375 (518)
..+++.+|.+|+| .| +++..+.+... .|+|||-|+.+.+.++ ...|++++..
T Consensus 28 ~~~~d~VlEIGpG-~G-aLT~~Ll~~~~------~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~ 83 (259)
T COG0030 28 ISPGDNVLEIGPG-LG-ALTEPLLERAA------RVTAIEIDRRLAEVLKERFAPYDNLTVING 83 (259)
T ss_pred CCCCCeEEEECCC-CC-HHHHHHHhhcC------eEEEEEeCHHHHHHHHHhcccccceEEEeC
Confidence 4568999999999 68 48777776554 6999999999877655 3467888874
No 328
>PLN02494 adenosylhomocysteinase
Probab=63.47 E-value=15 Score=40.59 Aligned_cols=100 Identities=11% Similarity=0.042 Sum_probs=57.7
Q ss_pred CCCCCCCeEEEEcCCC-CHhH-HHHHhcCCCcEEEEecCCCCCcEEecc-CCCCCCCC--CceeEEEEcCceeeccCChH
Q 010086 112 GYLSQSAKSLCVETQY-GQDV-FALKEIGVEDSIGIFKKSSKPLVISGE-GHRIPFDG--NTFDFVFVGGARLEKASKPL 186 (518)
Q Consensus 112 gll~~~~rvLDVGcGt-G~~~-~~L~~~g~~~v~gID~s~~~~l~~~~d-a~~LPf~D--~SFD~V~s~~~~l~~~~dp~ 186 (518)
+.+-.|.+++-+|+|. |..+ ..++..| .+|+.+|.++........+ ....+..+ ...|+|++... -.+
T Consensus 249 ~i~LaGKtVvViGyG~IGr~vA~~aka~G-a~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~tTG-t~~----- 321 (477)
T PLN02494 249 DVMIAGKVAVICGYGDVGKGCAAAMKAAG-ARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVTTTG-NKD----- 321 (477)
T ss_pred CCccCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEECCC-Ccc-----
Confidence 4445789999999998 6655 4445567 4899998865321100000 00111211 25799987543 222
Q ss_pred HHHHHHHhcccCCcEEEEEecCCCccCchhHh
Q 010086 187 DFASEIVRTLKPEGFAVVHVRAKDEYSFNSFL 218 (518)
Q Consensus 187 ~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~ 218 (518)
-...+....+||||+++..-...+..+...+.
T Consensus 322 vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~ 353 (477)
T PLN02494 322 IIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLE 353 (477)
T ss_pred chHHHHHhcCCCCCEEEEcCCCCCccCHHHHh
Confidence 22478889999999998864323333333443
No 329
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=63.22 E-value=22 Score=37.12 Aligned_cols=89 Identities=16% Similarity=0.084 Sum_probs=53.4
Q ss_pred HHHcCCCCCCCeEEEEcC-C-CCHhHHHHHh-cCCCcEEEEecCCCC----------CcEEeccCC-CC-----CCCCCc
Q 010086 108 LISEGYLSQSAKSLCVET-Q-YGQDVFALKE-IGVEDSIGIFKKSSK----------PLVISGEGH-RI-----PFDGNT 168 (518)
Q Consensus 108 L~~~gll~~~~rvLDVGc-G-tG~~~~~L~~-~g~~~v~gID~s~~~----------~l~~~~da~-~L-----Pf~D~S 168 (518)
|...+.+++|.+||-.|+ | .|..+..+++ .| .+|++++.++.. ..++....+ .+ ....+.
T Consensus 150 l~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G-~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~g 228 (348)
T PLN03154 150 FYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHG-CYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEG 228 (348)
T ss_pred HHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCC
Confidence 434456789999999998 4 3666655554 56 578888765311 011111100 00 011235
Q ss_pred eeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 169 FDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 169 FD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
+|+|+.... ...+.+..+.|++||.+++.
T Consensus 229 vD~v~d~vG--------~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 229 IDIYFDNVG--------GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred cEEEEECCC--------HHHHHHHHHHhccCCEEEEE
Confidence 888887542 13578899999999998764
No 330
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=62.99 E-value=36 Score=35.05 Aligned_cols=88 Identities=15% Similarity=0.158 Sum_probs=50.6
Q ss_pred cCCCCCCCeEEEEcCCC-CHhHHHHH-hcCCCcEEEEecCCCC---------CcEEeccCCC----C-CC-CCCceeEEE
Q 010086 111 EGYLSQSAKSLCVETQY-GQDVFALK-EIGVEDSIGIFKKSSK---------PLVISGEGHR----I-PF-DGNTFDFVF 173 (518)
Q Consensus 111 ~gll~~~~rvLDVGcGt-G~~~~~L~-~~g~~~v~gID~s~~~---------~l~~~~da~~----L-Pf-~D~SFD~V~ 173 (518)
..-++++.+||-.|+|. |..+..++ ..|...+++++.++.. ..++.....+ + .+ ++..+|+|+
T Consensus 167 ~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vi 246 (351)
T cd08233 167 RSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSF 246 (351)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEE
Confidence 34467889999998764 44443343 3575478888754310 0111100000 0 01 223489988
Q ss_pred EcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 174 VGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 174 s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
.... ....+.++.+.|++||.++..
T Consensus 247 d~~g-------~~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 247 DCAG-------VQATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred ECCC-------CHHHHHHHHHhccCCCEEEEE
Confidence 7542 123578899999999997764
No 331
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=62.76 E-value=20 Score=37.49 Aligned_cols=90 Identities=14% Similarity=0.178 Sum_probs=52.8
Q ss_pred HHcCCCCCCCeEEEEcCCC-CHhHHHHH-hcCCCcEEEEecCCCC---------CcEEeccCC--CC-----CCCCCcee
Q 010086 109 ISEGYLSQSAKSLCVETQY-GQDVFALK-EIGVEDSIGIFKKSSK---------PLVISGEGH--RI-----PFDGNTFD 170 (518)
Q Consensus 109 ~~~gll~~~~rvLDVGcGt-G~~~~~L~-~~g~~~v~gID~s~~~---------~l~~~~da~--~L-----Pf~D~SFD 170 (518)
.+...++++.+||-.|+|. |..+..++ ..|...|+++|.++.. ..++..... +. ...++.+|
T Consensus 179 ~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d 258 (368)
T cd08300 179 LNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVD 258 (368)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCc
Confidence 3445578899999999875 55554444 3674479999876421 011111000 00 01123588
Q ss_pred EEEEcCceeeccCChHHHHHHHHhcccCC-cEEEEE
Q 010086 171 FVFVGGARLEKASKPLDFASEIVRTLKPE-GFAVVH 205 (518)
Q Consensus 171 ~V~s~~~~l~~~~dp~~~l~Ei~RVLKPG-G~lvi~ 205 (518)
+|+.... -...+.+..+.|+|| |.+++.
T Consensus 259 ~vid~~g-------~~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 259 YTFECIG-------NVKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred EEEECCC-------ChHHHHHHHHhhccCCCeEEEE
Confidence 8887542 124678888999997 887764
No 332
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=62.24 E-value=17 Score=38.04 Aligned_cols=91 Identities=10% Similarity=0.108 Sum_probs=53.1
Q ss_pred HHHcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccC--CC----C-CCCCCce
Q 010086 108 LISEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEG--HR----I-PFDGNTF 169 (518)
Q Consensus 108 L~~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da--~~----L-Pf~D~SF 169 (518)
+...+.++++.+||-.|+|. |..+..+++ .|..+|+++|.++.. ..++.... .. + ...++.+
T Consensus 177 ~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~ 256 (368)
T TIGR02818 177 VLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGV 256 (368)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCC
Confidence 33445678899999999876 666555544 574479999875321 00111000 00 0 0111257
Q ss_pred eEEEEcCceeeccCChHHHHHHHHhcccCC-cEEEEE
Q 010086 170 DFVFVGGARLEKASKPLDFASEIVRTLKPE-GFAVVH 205 (518)
Q Consensus 170 D~V~s~~~~l~~~~dp~~~l~Ei~RVLKPG-G~lvi~ 205 (518)
|+|+.... . ...+.+..+.||+| |.+++.
T Consensus 257 d~vid~~G------~-~~~~~~~~~~~~~~~G~~v~~ 286 (368)
T TIGR02818 257 DYSFECIG------N-VNVMRAALECCHKGWGESIII 286 (368)
T ss_pred CEEEECCC------C-HHHHHHHHHHhhcCCCeEEEE
Confidence 88886542 1 24577888999997 987654
No 333
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=62.04 E-value=11 Score=36.02 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=37.5
Q ss_pred CceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhh----c--cCCceEEEeec
Q 010086 318 NRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEY----K--VKKKVKLLPYA 376 (518)
Q Consensus 318 ~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~----~--~~~~V~~~~~A 376 (518)
+..+++|+|++. |. ++..+.+.+|.. .|+++|.++...+.- . +.+||+++..-
T Consensus 16 ~~~~ilDiGcG~-G~-~~~~la~~~p~~----~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d 74 (194)
T TIGR00091 16 KAPLHLEIGCGK-GR-FLIDMAKQNPDK----NFLGIEIHTPIVLAANNKANKLGLKNLHVLCGD 74 (194)
T ss_pred CCceEEEeCCCc-cH-HHHHHHHhCCCC----CEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 567999999994 86 436777788853 799999999764321 1 34578877653
No 334
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.94 E-value=8.7 Score=36.28 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=30.0
Q ss_pred CCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC
Q 010086 115 SQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS 149 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~ 149 (518)
++.++.+|+|.|.|..+.+.++.|....+|+++++
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNp 105 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNP 105 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccH
Confidence 45679999999999999888888867889999874
No 335
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=61.90 E-value=15 Score=41.04 Aligned_cols=87 Identities=15% Similarity=0.191 Sum_probs=53.9
Q ss_pred CCCeEEEEcCCC-CHhHH-HHHhcCCCcEEEEecCCCC--------CcEEeccC-----------CCC--C--------C
Q 010086 116 QSAKSLCVETQY-GQDVF-ALKEIGVEDSIGIFKKSSK--------PLVISGEG-----------HRI--P--------F 164 (518)
Q Consensus 116 ~~~rvLDVGcGt-G~~~~-~L~~~g~~~v~gID~s~~~--------~l~~~~da-----------~~L--P--------f 164 (518)
++.++|-+|+|. |..+. .++..| ..|+.+|.++.. ..++.-+. ..+ + +
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG-A~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG-AIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence 568999999998 56553 344567 569999976310 11111000 000 0 2
Q ss_pred C--CCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEE
Q 010086 165 D--GNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVV 204 (518)
Q Consensus 165 ~--D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi 204 (518)
+ -..+|+|++... ..-.+.|.-..+|+.+.+|||++++-
T Consensus 242 ~e~~~~~DIVI~Tal-ipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 242 AAQAKEVDIIITTAL-IPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHhCCCCEEEECcc-cCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 1 245999998763 44434565577999999999998764
No 336
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=60.57 E-value=33 Score=34.94 Aligned_cols=87 Identities=14% Similarity=0.153 Sum_probs=50.6
Q ss_pred CCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCCC------CCCCCceeEEEE
Q 010086 112 GYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHRI------PFDGNTFDFVFV 174 (518)
Q Consensus 112 gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~L------Pf~D~SFD~V~s 174 (518)
.-++++.+||..|+|. |..+..+++ .|...+++++.++.. ..++.....++ -.+++.||+++.
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld 242 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIE 242 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEE
Confidence 4467889999987753 555544444 564467888654210 01111111100 013357999987
Q ss_pred cCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 175 GGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 175 ~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
... - ...+.++.+.|+++|.++..
T Consensus 243 ~~g-~------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 243 AVG-F------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred ccC-C------HHHHHHHHHHhhcCCEEEEE
Confidence 542 1 24688999999999987654
No 337
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=60.51 E-value=49 Score=34.02 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=53.2
Q ss_pred HcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCC----C-CC-CCCceeEE
Q 010086 110 SEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHR----I-PF-DGNTFDFV 172 (518)
Q Consensus 110 ~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~----L-Pf-~D~SFD~V 172 (518)
....++++.+||-.|+|. |..+..+++ .|...++++|.++.. ..++.....+ + .+ ....+|+|
T Consensus 160 ~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~v 239 (351)
T cd08285 160 ELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAV 239 (351)
T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEE
Confidence 344578899999998775 555544444 575568888865310 0111111000 0 11 23468988
Q ss_pred EEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 173 FVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 173 ~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
+.... ....+.++.+.|+++|.++..
T Consensus 240 ld~~g-------~~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 240 IIAGG-------GQDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred EECCC-------CHHHHHHHHHHhhcCCEEEEe
Confidence 86542 124678999999999987754
No 338
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=60.49 E-value=18 Score=34.91 Aligned_cols=38 Identities=18% Similarity=0.126 Sum_probs=27.9
Q ss_pred ceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchH
Q 010086 319 RYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 319 r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~ 362 (518)
...++|+|++ .|. ++-++.+.+|. .+|+++|+++...+
T Consensus 46 g~~VLDiGcG-tG~-~al~la~~~~~----~~V~giD~s~~~l~ 83 (187)
T PRK00107 46 GERVLDVGSG-AGF-PGIPLAIARPE----LKVTLVDSLGKKIA 83 (187)
T ss_pred CCeEEEEcCC-CCH-HHHHHHHHCCC----CeEEEEeCcHHHHH
Confidence 5678999999 474 43466666774 38999999997543
No 339
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=60.22 E-value=52 Score=33.12 Aligned_cols=89 Identities=16% Similarity=0.107 Sum_probs=52.6
Q ss_pred HHHcCCCCCCCeEEEEcCCC--CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCC----C-CCCCCcee
Q 010086 108 LISEGYLSQSAKSLCVETQY--GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHR----I-PFDGNTFD 170 (518)
Q Consensus 108 L~~~gll~~~~rvLDVGcGt--G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~----L-Pf~D~SFD 170 (518)
|...+.+++|.+||-.|++. |..+..+++ .| .++++++.++.. ..++.....+ + ......+|
T Consensus 135 l~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G-~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd 213 (329)
T cd08294 135 LLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKG-CKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGID 213 (329)
T ss_pred HHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcE
Confidence 33445578899999998533 666555544 56 478888754310 1111111111 0 11224589
Q ss_pred EEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 171 FVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 171 ~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
+|+.... ...+.+..+.|+++|.++..
T Consensus 214 ~vld~~g--------~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 214 CYFDNVG--------GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred EEEECCC--------HHHHHHHHHhhccCCEEEEE
Confidence 9887543 14578999999999998654
No 340
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=60.17 E-value=13 Score=38.48 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=38.2
Q ss_pred cCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHh----hcc---CCceEEEeece
Q 010086 316 FKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEE----YKV---KKKVKLLPYAA 377 (518)
Q Consensus 316 ~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~----~~~---~~~V~~~~~Av 377 (518)
..++..++|+|++ .|. ++..+.+... +|+++|.|+.+.+. +.. .++++++..-+
T Consensus 34 ~~~~~~VLEIG~G-~G~-LT~~Ll~~~~------~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da 94 (294)
T PTZ00338 34 IKPTDTVLEIGPG-TGN-LTEKLLQLAK------KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA 94 (294)
T ss_pred CCCcCEEEEecCc-hHH-HHHHHHHhCC------cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence 3567899999999 584 6666666432 69999999987653 321 35788877543
No 341
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=59.59 E-value=16 Score=33.94 Aligned_cols=52 Identities=13% Similarity=0.237 Sum_probs=35.2
Q ss_pred cCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhc----cCCceEEEee
Q 010086 316 FKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYK----VKKKVKLLPY 375 (518)
Q Consensus 316 ~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~----~~~~V~~~~~ 375 (518)
..++..++|+|+| .|. ++..+.+. . ..|+++|.|+...+... ..++++++..
T Consensus 11 ~~~~~~vLEiG~G-~G~-lt~~l~~~-~-----~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~ 66 (169)
T smart00650 11 LRPGDTVLEIGPG-KGA-LTEELLER-A-----ARVTAIEIDPRLAPRLREKFAAADNLTVIHG 66 (169)
T ss_pred CCCcCEEEEECCC-ccH-HHHHHHhc-C-----CeEEEEECCHHHHHHHHHHhccCCCEEEEEC
Confidence 4566789999999 474 65666654 1 27999999998755433 3356666653
No 342
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=59.54 E-value=15 Score=36.60 Aligned_cols=49 Identities=20% Similarity=0.455 Sum_probs=35.2
Q ss_pred CceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCc-cchHhhccCCceEEE
Q 010086 318 NRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADK-TFHEEYKVKKKVKLL 373 (518)
Q Consensus 318 ~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np-~~~~~~~~~~~V~~~ 373 (518)
++.+++|+|++. |. ++.++.+. +.. .|||+|.++ .+.+++...++|..+
T Consensus 75 ~~~~vlDiG~gt-G~-~t~~l~~~-ga~----~v~avD~~~~~l~~~l~~~~~v~~~ 124 (228)
T TIGR00478 75 KNKIVLDVGSST-GG-FTDCALQK-GAK----EVYGVDVGYNQLAEKLRQDERVKVL 124 (228)
T ss_pred CCCEEEEcccCC-CH-HHHHHHHc-CCC----EEEEEeCCHHHHHHHHhcCCCeeEe
Confidence 578999999984 74 75666654 322 799999999 566667776766543
No 343
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=59.06 E-value=21 Score=32.36 Aligned_cols=53 Identities=13% Similarity=0.198 Sum_probs=34.6
Q ss_pred CCceEEEEeCCCCCCcchhhhhh-hhCCCCCcceEEEEEcCCccchHhhc------cCCceEEEee
Q 010086 317 KNRYVYVDVGARSYGSSIGSWFK-KQYPKQNKTFDVYAIEADKTFHEEYK------VKKKVKLLPY 375 (518)
Q Consensus 317 ~~r~V~iD~GAn~~g~sv~~~F~-~~YP~~~~~f~V~afE~np~~~~~~~------~~~~V~~~~~ 375 (518)
++...++|+|++ .|... ..+. +.+|. .+|+++|.+|..-+..+ ..++++++..
T Consensus 2 ~~~~~iLDlGcG-~G~~~-~~l~~~~~~~----~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~ 61 (152)
T PF13847_consen 2 KSNKKILDLGCG-TGRLL-IQLAKELNPG----AKIIGVDISEEMIEYAKKRAKELGLDNIEFIQG 61 (152)
T ss_dssp TTTSEEEEET-T-TSHHH-HHHHHHSTTT----SEEEEEESSHHHHHHHHHHHHHTTSTTEEEEES
T ss_pred CCCCEEEEecCc-CcHHH-HHHHHhcCCC----CEEEEEECcHHHHHHhhcccccccccccceEEe
Confidence 356789999999 47533 3444 45663 38999999998644322 3457777763
No 344
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=59.00 E-value=86 Score=32.16 Aligned_cols=89 Identities=19% Similarity=0.050 Sum_probs=51.1
Q ss_pred HHcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC--------CcEEeccCCCCC-------CCCCceeE
Q 010086 109 ISEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK--------PLVISGEGHRIP-------FDGNTFDF 171 (518)
Q Consensus 109 ~~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~--------~l~~~~da~~LP-------f~D~SFD~ 171 (518)
.....+.++.+||-.|+|. |..+..+++ .|...++.++.++.. ...+ -+.++.+ ...+.+|+
T Consensus 168 ~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~d~ 246 (350)
T cd08240 168 KKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVV-VNGSDPDAAKRIIKAAGGGVDA 246 (350)
T ss_pred HhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEE-ecCCCccHHHHHHHHhCCCCcE
Confidence 3344456788999998765 555444443 675578888754210 0000 0111111 11125888
Q ss_pred EEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 172 VFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 172 V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
|+.... ....+.++.|.|+++|.++..
T Consensus 247 vid~~g-------~~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 247 VIDFVN-------NSATASLAFDILAKGGKLVLV 273 (350)
T ss_pred EEECCC-------CHHHHHHHHHHhhcCCeEEEE
Confidence 887542 124688999999999998764
No 345
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=58.49 E-value=68 Score=32.58 Aligned_cols=89 Identities=12% Similarity=0.157 Sum_probs=53.1
Q ss_pred HHHcCCCCCCCeEEEEcC-C-CCHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccC-CCC-----CCCCCce
Q 010086 108 LISEGYLSQSAKSLCVET-Q-YGQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEG-HRI-----PFDGNTF 169 (518)
Q Consensus 108 L~~~gll~~~~rvLDVGc-G-tG~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da-~~L-----Pf~D~SF 169 (518)
+...+.+++|.+||-.|+ | .|..+..+++ .| .++++++.++.. ..++..+. ... ....+.+
T Consensus 130 l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G-~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gv 208 (325)
T TIGR02825 130 LLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGY 208 (325)
T ss_pred HHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCe
Confidence 334556789999999995 3 3666655554 56 478888765311 01111110 000 0122468
Q ss_pred eEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 170 DFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 170 D~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
|+|+.... ...+.+..+.|+|||.++..
T Consensus 209 dvv~d~~G--------~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 209 DCYFDNVG--------GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred EEEEECCC--------HHHHHHHHHHhCcCcEEEEe
Confidence 99887542 12467889999999998864
No 346
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=58.42 E-value=16 Score=34.72 Aligned_cols=48 Identities=21% Similarity=0.171 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC
Q 010086 100 FYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS 149 (518)
Q Consensus 100 ~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~ 149 (518)
.-..++++|+... -.+|+.|||-=||+|..+.+..++| .+.+|+|+++
T Consensus 176 kP~~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l~-R~~ig~E~~~ 223 (231)
T PF01555_consen 176 KPVELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEELG-RRYIGIEIDE 223 (231)
T ss_dssp S-HHHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSH
T ss_pred CCHHHHHHHHHhh-hccceeeehhhhccChHHHHHHHcC-CeEEEEeCCH
Confidence 3346666666443 4789999999999999998888888 7899999864
No 347
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=58.14 E-value=6.8 Score=37.25 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=20.2
Q ss_pred hHHHHHHHHhcccCCcEEEEEecCC
Q 010086 185 PLDFASEIVRTLKPEGFAVVHVRAK 209 (518)
Q Consensus 185 p~~~l~Ei~RVLKPGG~lvi~~~~~ 209 (518)
....+.|+.|+|||||.+++.++..
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~~ 59 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDDR 59 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-CC
T ss_pred HHHHHHHHHhhcCCCeeEEEEecch
Confidence 3567999999999999999887543
No 348
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=57.88 E-value=20 Score=34.90 Aligned_cols=42 Identities=21% Similarity=0.209 Sum_probs=30.1
Q ss_pred cCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchH
Q 010086 316 FKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 316 ~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~ 362 (518)
++++..++|+|++. |. .+.++.+..+. +-+|+++|.+|.+.+
T Consensus 74 ~~~g~~VLdIG~Gs-G~-~t~~la~~~~~---~~~V~~vE~~~~~~~ 115 (212)
T PRK13942 74 LKEGMKVLEIGTGS-GY-HAAVVAEIVGK---SGKVVTIERIPELAE 115 (212)
T ss_pred CCCcCEEEEECCcc-cH-HHHHHHHhcCC---CCEEEEEeCCHHHHH
Confidence 45678899999994 74 44566555442 227999999998764
No 349
>PHA01634 hypothetical protein
Probab=57.84 E-value=12 Score=34.43 Aligned_cols=34 Identities=12% Similarity=0.027 Sum_probs=30.0
Q ss_pred CCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC
Q 010086 116 QSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS 149 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~ 149 (518)
.+.+|+|||++-|..+..+.-.|...|++++.++
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~ 61 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEE 61 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCH
Confidence 5789999999999999888888888999999764
No 350
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=57.72 E-value=50 Score=34.00 Aligned_cols=88 Identities=10% Similarity=0.072 Sum_probs=50.7
Q ss_pred cCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccC---CCC--CCCCCcee-EEE
Q 010086 111 EGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEG---HRI--PFDGNTFD-FVF 173 (518)
Q Consensus 111 ~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da---~~L--Pf~D~SFD-~V~ 173 (518)
...++++.+||-.|+|+ |..+..+++ .|...+++++.++.. ..++..+. .++ -.....+| +|+
T Consensus 155 ~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~ 234 (347)
T PRK10309 155 LAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLIL 234 (347)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEE
Confidence 34567889999999876 555544444 574457888765311 01111110 000 01223566 666
Q ss_pred EcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 174 VGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 174 s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
.... . ...+.+..+.|+|||.+++.
T Consensus 235 d~~G------~-~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 235 ETAG------V-PQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred ECCC------C-HHHHHHHHHHhhcCCEEEEE
Confidence 5432 1 24678899999999998765
No 351
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=57.67 E-value=60 Score=32.82 Aligned_cols=86 Identities=9% Similarity=0.102 Sum_probs=50.6
Q ss_pred HcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCCCcE-------EeccCCCCCCCCCceeEEEEcCceee
Q 010086 110 SEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSKPLV-------ISGEGHRIPFDGNTFDFVFVGGARLE 180 (518)
Q Consensus 110 ~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~~l~-------~~~da~~LPf~D~SFD~V~s~~~~l~ 180 (518)
...-++++.++|-.|+|. |..+..+++ .| .+++.++.++..... ..-+.... ++..+|.++....
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g-~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~vD~vi~~~~--- 234 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQG-AEVFAFTRSGEHQELARELGADWAGDSDDL--PPEPLDAAIIFAP--- 234 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHCC-CeEEEEcCChHHHHHHHHhCCcEEeccCcc--CCCcccEEEEcCC---
Confidence 445577889999988775 444433433 56 578877754311000 00011111 3456888876422
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEE
Q 010086 181 KASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 181 ~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
....+.++.|.|+++|.++..
T Consensus 235 ----~~~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 235 ----VGALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred ----cHHHHHHHHHHhhcCCEEEEE
Confidence 124688999999999998853
No 352
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=56.88 E-value=71 Score=32.48 Aligned_cols=90 Identities=10% Similarity=0.042 Sum_probs=52.4
Q ss_pred CCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------------CCcE-----EeccCCCCCCCCCc-eeEE
Q 010086 117 SAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------------KPLV-----ISGEGHRIPFDGNT-FDFV 172 (518)
Q Consensus 117 ~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------------~~l~-----~~~da~~LPf~D~S-FD~V 172 (518)
..+||.+|+|+|-.....+.....+|+--|+... ...+ .-+++....+--.. ||+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 4579999999996544444433356666665321 0001 11233222222222 9999
Q ss_pred EEcCceeeccCChHHHHHHHHhcccCCcEEEEEec
Q 010086 173 FVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 173 ~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~ 207 (518)
+++.+ +-+-..+.....=+.-.|-.+|++.+...
T Consensus 167 lasDv-vy~~~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 167 LASDV-VYEEESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEeee-eecCCcchhHHHHHHHHHhcCCeEEEEEe
Confidence 99987 65555566666667777777886555543
No 353
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=56.87 E-value=85 Score=32.70 Aligned_cols=90 Identities=11% Similarity=0.110 Sum_probs=50.2
Q ss_pred HHHcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------C-cEEe-ccCCCCCCCCCceeEEEE
Q 010086 108 LISEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------P-LVIS-GEGHRIPFDGNTFDFVFV 174 (518)
Q Consensus 108 L~~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~-l~~~-~da~~LPf~D~SFD~V~s 174 (518)
+...+..+++.++|-.|+|. |..+..+++ .| .+++.++.++.. . ..+. .+...+.-....+|+|+.
T Consensus 172 l~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G-~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid 250 (357)
T PLN02514 172 LSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMG-HHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIID 250 (357)
T ss_pred HHHcccCCCCCeEEEEcccHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEE
Confidence 33445567889999988876 665544544 56 467777654310 0 0110 000000000124788876
Q ss_pred cCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 175 GGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 175 ~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
... ....+.++.+.|+|||.++..
T Consensus 251 ~~g-------~~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 251 TVP-------VFHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred CCC-------chHHHHHHHHHhccCCEEEEE
Confidence 532 123577888999999998764
No 354
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=56.53 E-value=35 Score=34.96 Aligned_cols=89 Identities=13% Similarity=0.073 Sum_probs=52.5
Q ss_pred HHHcCCCCCCCeEEEEcC-CC-CHhHHHHHh-cCCCcEEEEecCCCC----------CcEEe-ccCCCC-----CCCCCc
Q 010086 108 LISEGYLSQSAKSLCVET-QY-GQDVFALKE-IGVEDSIGIFKKSSK----------PLVIS-GEGHRI-----PFDGNT 168 (518)
Q Consensus 108 L~~~gll~~~~rvLDVGc-Gt-G~~~~~L~~-~g~~~v~gID~s~~~----------~l~~~-~da~~L-----Pf~D~S 168 (518)
|...+-+++|.+||-.|+ |. |..+..+++ .| .++++++.++.. ..++. .+.... ....+.
T Consensus 143 l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G-~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~g 221 (338)
T cd08295 143 FYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKG-CYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNG 221 (338)
T ss_pred HHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCC
Confidence 334455789999999997 32 666555544 56 478887754311 01111 000000 011246
Q ss_pred eeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 169 FDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 169 FD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
+|+|+.... ...+.+..+.|+++|.++..
T Consensus 222 vd~v~d~~g--------~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 222 IDIYFDNVG--------GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred cEEEEECCC--------HHHHHHHHHHhccCcEEEEe
Confidence 898887542 24578899999999998754
No 355
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=56.19 E-value=18 Score=36.37 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=36.7
Q ss_pred cCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhh----ccCCceEEEee
Q 010086 316 FKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEY----KVKKKVKLLPY 375 (518)
Q Consensus 316 ~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~----~~~~~V~~~~~ 375 (518)
+.+...++|+|+| .|. ++..+.+.. .+|+++|.|+.+.+.. ...++|+++..
T Consensus 27 ~~~~~~VLEIG~G-~G~-lt~~L~~~~------~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~ 82 (258)
T PRK14896 27 DTDGDPVLEIGPG-KGA-LTDELAKRA------KKVYAIELDPRLAEFLRDDEIAAGNVEIIEG 82 (258)
T ss_pred CCCcCeEEEEeCc-cCH-HHHHHHHhC------CEEEEEECCHHHHHHHHHHhccCCCEEEEEe
Confidence 4578899999999 584 655665542 2799999999875543 23467887764
No 356
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=56.00 E-value=29 Score=35.31 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=31.4
Q ss_pred ccCCceEEEEeCCCCCCcchhhhhhh-hCCCCCcceEEEEEcCCccchH
Q 010086 315 SFKNRYVYVDVGARSYGSSIGSWFKK-QYPKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 315 s~~~r~V~iD~GAn~~g~sv~~~F~~-~YP~~~~~f~V~afE~np~~~~ 362 (518)
.+.|+.-++|.|+++ |. ++.++.. -.|.+ +|+.||-.+.+++
T Consensus 91 gi~pg~rVlEAGtGS-G~-lt~~La~~vg~~G----~v~tyE~r~d~~k 133 (256)
T COG2519 91 GISPGSRVLEAGTGS-GA-LTAYLARAVGPEG----HVTTYEIREDFAK 133 (256)
T ss_pred CCCCCCEEEEcccCc-hH-HHHHHHHhhCCCc----eEEEEEecHHHHH
Confidence 356899999999996 73 6555543 45655 8999999998764
No 357
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=55.84 E-value=55 Score=33.98 Aligned_cols=89 Identities=16% Similarity=0.177 Sum_probs=50.9
Q ss_pred HcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCCC------CCCCCceeEE
Q 010086 110 SEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHRI------PFDGNTFDFV 172 (518)
Q Consensus 110 ~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~L------Pf~D~SFD~V 172 (518)
....+.++.+||-.|+|. |..+..+++ .|...+++++.++.. ..++..+.... ..++..||+|
T Consensus 181 ~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~d~v 260 (367)
T cd08263 181 HAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREITGGRGVDVV 260 (367)
T ss_pred hcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceEecCCcccHHHHHHHHhCCCCCCEE
Confidence 334457888998887653 454444443 564448888754311 01111111110 1134568999
Q ss_pred EEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 173 FVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 173 ~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
+.... .+ ..+.++.+.|+++|.++..
T Consensus 261 ld~vg------~~-~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 261 VEALG------KP-ETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred EEeCC------CH-HHHHHHHHHHhcCCEEEEE
Confidence 87532 11 2578899999999997765
No 358
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=55.24 E-value=61 Score=33.68 Aligned_cols=89 Identities=13% Similarity=0.146 Sum_probs=51.8
Q ss_pred HcCCCCCCCeEEEEcCCC-CHhHHHH-HhcCCCcEEEEecCCCC---------CcEEeccC----CCC-C-CCCCceeEE
Q 010086 110 SEGYLSQSAKSLCVETQY-GQDVFAL-KEIGVEDSIGIFKKSSK---------PLVISGEG----HRI-P-FDGNTFDFV 172 (518)
Q Consensus 110 ~~gll~~~~rvLDVGcGt-G~~~~~L-~~~g~~~v~gID~s~~~---------~l~~~~da----~~L-P-f~D~SFD~V 172 (518)
....+.++.++|-.|+|. |..+..+ +..|...+++++.++.. ..++.... ..+ . .+...+|++
T Consensus 176 ~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~v 255 (363)
T cd08279 176 NTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASEDDAVEAVRDLTDGRGADYA 255 (363)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCCEE
Confidence 345577889999998754 5554334 34674458887754311 00111110 001 1 124568988
Q ss_pred EEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 173 FVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 173 ~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
+.... ....+.++.|.|+++|+++..
T Consensus 256 ld~~~-------~~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 256 FEAVG-------RAATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred EEcCC-------ChHHHHHHHHHhhcCCeEEEE
Confidence 87542 124678999999999998764
No 359
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=55.14 E-value=22 Score=40.64 Aligned_cols=48 Identities=19% Similarity=0.333 Sum_probs=33.2
Q ss_pred eccCCC-CCCCCCceeEEEEcCceeeccCChH----HHHHHHHhcccCCcEEEEE
Q 010086 156 SGEGHR-IPFDGNTFDFVFVGGARLEKASKPL----DFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 156 ~~da~~-LPf~D~SFD~V~s~~~~l~~~~dp~----~~l~Ei~RVLKPGG~lvi~ 205 (518)
.||+.+ ++--+..||+++--. |.=..+|+ .+++++.|.++|||+++--
T Consensus 153 ~gd~~~~~~~~~~~~d~~~lD~--FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 153 FGDANELLPQLDARADAWFLDG--FAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred ecCHHHHHHhccccccEEEeCC--CCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 466543 232235699999855 55445664 6899999999999998743
No 360
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=55.01 E-value=26 Score=33.15 Aligned_cols=49 Identities=18% Similarity=0.123 Sum_probs=32.9
Q ss_pred CCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhccCCceEEEee
Q 010086 317 KNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYKVKKKVKLLPY 375 (518)
Q Consensus 317 ~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~~~~~V~~~~~ 375 (518)
+++..++|+|++. |. ++..+.+.+..+ -+|+++|.+|.. ..++++++..
T Consensus 31 ~~g~~VLDiG~Gt-G~-~~~~l~~~~~~~---~~v~~vDis~~~-----~~~~i~~~~~ 79 (188)
T TIGR00438 31 KPGDTVLDLGAAP-GG-WSQVAVEQVGGK---GRVIAVDLQPMK-----PIENVDFIRG 79 (188)
T ss_pred CCCCEEEEecCCC-CH-HHHHHHHHhCCC---ceEEEEeccccc-----cCCCceEEEe
Confidence 5678899999994 64 545566655321 279999999964 2356665543
No 361
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=53.63 E-value=14 Score=33.51 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=28.8
Q ss_pred cCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchH
Q 010086 316 FKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 316 ~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~ 362 (518)
..+...+||+|+| .|- ++..+...++....+..|.++|.|+...+
T Consensus 23 ~~~~~~vvD~GsG-~Gy-Ls~~La~~l~~~~~~~~v~~iD~~~~~~~ 67 (141)
T PF13679_consen 23 SKRCITVVDLGSG-KGY-LSRALAHLLCNSSPNLRVLGIDCNESLVE 67 (141)
T ss_pred cCCCCEEEEeCCC-hhH-HHHHHHHHHHhcCCCCeEEEEECCcHHHH
Confidence 3567889999998 463 42233322222223458999999998754
No 362
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=53.58 E-value=43 Score=37.62 Aligned_cols=104 Identities=14% Similarity=0.147 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHcCCC---CCCCeEEEEcCCCCHhHHH-HHh--c-C-CCcEEEEecCCCC---------------CcEEe
Q 010086 100 FYSSVFQDLISEGYL---SQSAKSLCVETQYGQDVFA-LKE--I-G-VEDSIGIFKKSSK---------------PLVIS 156 (518)
Q Consensus 100 ~~~~l~~~L~~~gll---~~~~rvLDVGcGtG~~~~~-L~~--~-g-~~~v~gID~s~~~---------------~l~~~ 156 (518)
+-..++..|.+++-- +.-..|+-+|+|-|-++.+ |+. . . -.++++|+.++.. ..++.
T Consensus 348 Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~ 427 (649)
T KOG0822|consen 348 YQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIIS 427 (649)
T ss_pred HHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEe
Confidence 334555566665321 1134578999999988733 321 1 1 2478899987632 22457
Q ss_pred ccCCCCCCCCCceeEEEEcCceeeccCC---hHHHHHHHHhcccCCcEEEEE
Q 010086 157 GEGHRIPFDGNTFDFVFVGGARLEKASK---PLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 157 ~da~~LPf~D~SFD~V~s~~~~l~~~~d---p~~~l~Ei~RVLKPGG~lvi~ 205 (518)
+|.+..+=|++..|+++|-. |-.+-| -.+.+.-+.+.|||.|+.+=.
T Consensus 428 ~DMR~w~ap~eq~DI~VSEL--LGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 428 SDMRKWNAPREQADIIVSEL--LGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred ccccccCCchhhccchHHHh--hccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 88888885679999999865 333322 127889999999999886543
No 363
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=53.28 E-value=39 Score=35.23 Aligned_cols=89 Identities=15% Similarity=0.147 Sum_probs=52.6
Q ss_pred HcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCC----C-CCCCCceeEEE
Q 010086 110 SEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHR----I-PFDGNTFDFVF 173 (518)
Q Consensus 110 ~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~----L-Pf~D~SFD~V~ 173 (518)
....++++.+||-.|+|. |..+..+++ .|...++++|.++.. ..++.....+ + .+....+|+|+
T Consensus 180 ~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vl 259 (365)
T cd08278 180 NVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYAL 259 (365)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEE
Confidence 344567889999998765 555544444 675568888865310 0111111000 0 01134589888
Q ss_pred EcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 174 VGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 174 s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
.... - ...+.++.+.|+++|.++..
T Consensus 260 d~~g-~------~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 260 DTTG-V------PAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred ECCC-C------cHHHHHHHHHhccCCEEEEe
Confidence 7532 1 13578999999999997764
No 364
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=53.11 E-value=33 Score=35.80 Aligned_cols=89 Identities=15% Similarity=0.176 Sum_probs=51.4
Q ss_pred HcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccC--CCC-----CCCCCceeE
Q 010086 110 SEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEG--HRI-----PFDGNTFDF 171 (518)
Q Consensus 110 ~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da--~~L-----Pf~D~SFD~ 171 (518)
+...++++++||-.|+|. |..+..+++ .|..+|++++.++.. ..++.... .++ ....+.+|+
T Consensus 181 ~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~ 260 (369)
T cd08301 181 NVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDY 260 (369)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCE
Confidence 334568899999999875 555544443 575479999865321 01111110 000 011235788
Q ss_pred EEEcCceeeccCChHHHHHHHHhcccCC-cEEEEE
Q 010086 172 VFVGGARLEKASKPLDFASEIVRTLKPE-GFAVVH 205 (518)
Q Consensus 172 V~s~~~~l~~~~dp~~~l~Ei~RVLKPG-G~lvi~ 205 (518)
|+.... ....+.++.+.++|| |.+++.
T Consensus 261 vid~~G-------~~~~~~~~~~~~~~~~g~~v~~ 288 (369)
T cd08301 261 SFECTG-------NIDAMISAFECVHDGWGVTVLL 288 (369)
T ss_pred EEECCC-------ChHHHHHHHHHhhcCCCEEEEE
Confidence 886542 124577788999996 887764
No 365
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=52.62 E-value=37 Score=34.69 Aligned_cols=90 Identities=10% Similarity=0.204 Sum_probs=51.5
Q ss_pred HHHcCCCCCC--CeEEEEcC-C-CCHhHHHHHh-cCCCcEEEEecCCCC----------CcEEeccCCCC-----CCCCC
Q 010086 108 LISEGYLSQS--AKSLCVET-Q-YGQDVFALKE-IGVEDSIGIFKKSSK----------PLVISGEGHRI-----PFDGN 167 (518)
Q Consensus 108 L~~~gll~~~--~rvLDVGc-G-tG~~~~~L~~-~g~~~v~gID~s~~~----------~l~~~~da~~L-----Pf~D~ 167 (518)
|...+-++++ .+||-.|+ | .|..+..+++ .|..+|++++.++.. ..++.....++ ...+.
T Consensus 144 l~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~ 223 (345)
T cd08293 144 IQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPE 223 (345)
T ss_pred HHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCC
Confidence 3344446665 89999997 3 3666655544 564478888765311 01111111110 01124
Q ss_pred ceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 168 TFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 168 SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
.+|+|+.... . ..+.+..+.|+|||.++..
T Consensus 224 gvd~vid~~g------~--~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 224 GVDVYFDNVG------G--EISDTVISQMNENSHIILC 253 (345)
T ss_pred CceEEEECCC------c--HHHHHHHHHhccCCEEEEE
Confidence 6899987542 1 2357889999999998763
No 366
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=52.61 E-value=78 Score=34.20 Aligned_cols=116 Identities=8% Similarity=-0.069 Sum_probs=67.8
Q ss_pred hhHHHHH---hhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCC--C--------------------------
Q 010086 92 KEWIKAV---NFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGV--E-------------------------- 140 (518)
Q Consensus 92 ~~wr~~v---~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~--~-------------------------- 140 (518)
+.||..- .+=..+-..++....-+++..++|==||+|.++...+..+. +
T Consensus 164 RGyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~e 243 (381)
T COG0116 164 RGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREE 243 (381)
T ss_pred ccccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHH
Confidence 4455532 23344444555544456777899999999998854433321 0
Q ss_pred ------------cEEEEecCCC----------------CCcEEeccCCCCCCCCCceeEEEEcCceeeccCC---hHHHH
Q 010086 141 ------------DSIGIFKKSS----------------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKASK---PLDFA 189 (518)
Q Consensus 141 ------------~v~gID~s~~----------------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~d---p~~~l 189 (518)
..+|.|+++. ...+.++|+..++=+-+.+|+|+|+-=+=.-+.+ ..+..
T Consensus 244 a~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY 323 (381)
T COG0116 244 AEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLY 323 (381)
T ss_pred HHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHH
Confidence 2679999741 1235688998885433899999998510111222 23233
Q ss_pred ----HHHHhcccCCcEEEEEec
Q 010086 190 ----SEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 190 ----~Ei~RVLKPGG~lvi~~~ 207 (518)
+++.|.++--+.++++..
T Consensus 324 ~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 324 REFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHHHHHhcCCceEEEEcc
Confidence 445555565566666653
No 367
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.74 E-value=14 Score=35.48 Aligned_cols=53 Identities=21% Similarity=0.357 Sum_probs=33.3
Q ss_pred CCCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHh
Q 010086 164 FDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFL 218 (518)
Q Consensus 164 f~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~ 218 (518)
-..++||+|++..-.| .-+.-+..+.-|.+.|||.|..++... +..-|++-|.
T Consensus 99 ~eq~tFDiIlaADClF-fdE~h~sLvdtIk~lL~p~g~Al~fsP-RRg~sL~kF~ 151 (201)
T KOG3201|consen 99 QEQHTFDIILAADCLF-FDEHHESLVDTIKSLLRPSGRALLFSP-RRGQSLQKFL 151 (201)
T ss_pred HhhCcccEEEeccchh-HHHHHHHHHHHHHHHhCcccceeEecC-cccchHHHHH
Confidence 3457999999987412 111235678899999999999555433 3333334443
No 368
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=51.37 E-value=64 Score=30.50 Aligned_cols=47 Identities=21% Similarity=0.371 Sum_probs=35.0
Q ss_pred CCCCCceeEEEEcCceeeccC------C---------hHHHHHHHHhcccCCcEEEEEecCCCcc
Q 010086 163 PFDGNTFDFVFVGGARLEKAS------K---------PLDFASEIVRTLKPEGFAVVHVRAKDEY 212 (518)
Q Consensus 163 Pf~D~SFD~V~s~~~~l~~~~------d---------p~~~l~Ei~RVLKPGG~lvi~~~~~~~~ 212 (518)
++..+.||.|+-+ |.|+- + ...+++-+.++|+++|.+.|+.-.+..|
T Consensus 70 ~~~~~~FDrIiFN---FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py 131 (166)
T PF10354_consen 70 RLKNQRFDRIIFN---FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY 131 (166)
T ss_pred cccCCcCCEEEEe---CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC
Confidence 4578899999986 45553 0 1257889999999999999987655544
No 369
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=51.06 E-value=10 Score=40.10 Aligned_cols=58 Identities=26% Similarity=0.354 Sum_probs=36.0
Q ss_pred Chhhhhhhhhccccc---CCcccccccCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccc
Q 010086 293 KPWITMKRNIKNIKY---LPSMADISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTF 360 (518)
Q Consensus 293 ~~~~~~~~~~~~~~y---lp~~~d~s~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~ 360 (518)
+...++.++++.+.. |+-..+ ++.=.+.+|||++ +|. ++.-....|| +|-.+|.|..+
T Consensus 151 ~~~~~sm~~l~~~~~~~il~~~~G--f~~v~~avDvGgG-iG~-v~k~ll~~fp------~ik~infdlp~ 211 (342)
T KOG3178|consen 151 KDFNGSMSFLSTLVMKKILEVYTG--FKGVNVAVDVGGG-IGR-VLKNLLSKYP------HIKGINFDLPF 211 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcc--cccCceEEEcCCc-HhH-HHHHHHHhCC------CCceeecCHHH
Confidence 334444444444332 333344 5667899999999 796 4455666999 47777777654
No 370
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=50.97 E-value=29 Score=32.45 Aligned_cols=52 Identities=21% Similarity=0.211 Sum_probs=36.4
Q ss_pred CceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhh------ccCCceEEEee
Q 010086 318 NRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEY------KVKKKVKLLPY 375 (518)
Q Consensus 318 ~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~------~~~~~V~~~~~ 375 (518)
+..-++|+|+|. |- ++-++.+.+|.. +|+++|.||...+.- ++..+|+++..
T Consensus 31 ~~~~vLDlG~G~-G~-i~~~la~~~~~~----~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~ 88 (170)
T PF05175_consen 31 KGGRVLDLGCGS-GV-ISLALAKRGPDA----KVTAVDINPDALELAKRNAERNGLENVEVVQS 88 (170)
T ss_dssp TTCEEEEETSTT-SH-HHHHHHHTSTCE----EEEEEESBHHHHHHHHHHHHHTTCTTEEEEES
T ss_pred cCCeEEEecCCh-HH-HHHHHHHhCCCC----EEEEEcCCHHHHHHHHHHHHhcCccccccccc
Confidence 466699999994 74 767888888843 799999999864321 13334666664
No 371
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=50.91 E-value=85 Score=31.46 Aligned_cols=128 Identities=13% Similarity=0.109 Sum_probs=77.0
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCCCC----------------cEEeccCCCCCC-CCCceeEEEEc
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSSKP----------------LVISGEGHRIPF-DGNTFDFVFVG 175 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~~~----------------l~~~~da~~LPf-~D~SFD~V~s~ 175 (518)
++.+.++.||||-.+.+..+|-+.+ ...+++.|+++.|- .+..+|. -.++ ++..+|.|+..
T Consensus 14 V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg-l~~l~~~d~~d~ivIA 92 (226)
T COG2384 14 VKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG-LAVLELEDEIDVIVIA 92 (226)
T ss_pred HHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC-ccccCccCCcCEEEEe
Confidence 4566779999999999988887655 56899999986431 1235666 2255 45589999987
Q ss_pred CceeeccCChHHHHHHHHhcccCCcEEEEEecCCCccCchhHhhhccCccEEEEeccCCCCCCccceeEEEEeec
Q 010086 176 GARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSFLDLFNSCKLVKSRDIDGIDSSLPYIREIVLKKE 250 (518)
Q Consensus 176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~~~~~~~s~~~~~~lf~~~~~v~~~~v~~~~~~~p~~~~vv~kK~ 250 (518)
+. -- .--...++|-..-|+.=-.++++... .++.++.++.. ++|+++.-.=+..=++ +|-.++..+.
T Consensus 93 GM--GG-~lI~~ILee~~~~l~~~~rlILQPn~-~~~~LR~~L~~-~~~~I~~E~ileE~~k---iYEIlv~e~~ 159 (226)
T COG2384 93 GM--GG-TLIREILEEGKEKLKGVERLILQPNI-HTYELREWLSA-NSYEIKAETILEEDGK---IYEILVVEKS 159 (226)
T ss_pred CC--cH-HHHHHHHHHhhhhhcCcceEEECCCC-CHHHHHHHHHh-CCceeeeeeeecccCe---EEEEEEEecC
Confidence 63 11 00224556666666544456666432 23444555543 6777766554433221 4445666665
No 372
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=50.78 E-value=14 Score=37.37 Aligned_cols=55 Identities=18% Similarity=0.287 Sum_probs=34.6
Q ss_pred ccCCceEEEEeCCCCCCcchhhhhhh-hCCCCCcceEEEEEcCCccchH----hhc---cCCceEEEee
Q 010086 315 SFKNRYVYVDVGARSYGSSIGSWFKK-QYPKQNKTFDVYAIEADKTFHE----EYK---VKKKVKLLPY 375 (518)
Q Consensus 315 s~~~r~V~iD~GAn~~g~sv~~~F~~-~YP~~~~~f~V~afE~np~~~~----~~~---~~~~V~~~~~ 375 (518)
.++|+..+|++|+|+ |+ ++.+|.+ -.|.+ .||.||-+..+.+ .+. ...+|++...
T Consensus 37 ~i~pG~~VlEaGtGS-G~-lt~~l~r~v~p~G----~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~ 99 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGS-GS-LTHALARAVGPTG----HVYTYEFREDRAEKARKNFERHGLDDNVTVHHR 99 (247)
T ss_dssp T--TT-EEEEE--TT-SH-HHHHHHHHHTTTS----EEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES
T ss_pred CCCCCCEEEEecCCc-HH-HHHHHHHHhCCCe----EEEccccCHHHHHHHHHHHHHcCCCCCceeEec
Confidence 357899999999996 74 6555554 57865 8999999988754 233 2346666664
No 373
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=50.20 E-value=34 Score=33.12 Aligned_cols=126 Identities=18% Similarity=0.174 Sum_probs=72.3
Q ss_pred CCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHh------hccCCceEEEeece-e-----ecCCce
Q 010086 317 KNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEE------YKVKKKVKLLPYAA-W-----VRNETL 384 (518)
Q Consensus 317 ~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~------~~~~~~V~~~~~Av-~-----~~~~tl 384 (518)
...+++||+|.| .|..+ .-..+.+|. ..+.++|.......+ -.+.+||.++..-+ + ..++++
T Consensus 16 ~~~~l~lEIG~G-~G~~l-~~~A~~~Pd----~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v 89 (195)
T PF02390_consen 16 NDNPLILEIGCG-KGEFL-IELAKRNPD----INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSV 89 (195)
T ss_dssp SCCEEEEEET-T-TSHHH-HHHHHHSTT----SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSE
T ss_pred CCCCeEEEecCC-CCHHH-HHHHHHCCC----CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCch
Confidence 356699999999 58766 566668894 389999999875332 12679999998632 1 123444
Q ss_pred EE-EecC-CCCcchhhcccCCccccccccCCCCCCCCCcceeecccHHHHHhhcCCCCCeEEEEeeccchhhhhHHHHHh
Q 010086 385 SF-QINH-DPDKEVVVKGRGMGRIQPVQSLSDGGFDGEVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGTEFDLIPRLFE 462 (518)
Q Consensus 385 ~f-~~~~-~~~~~~~~~~~g~~~i~p~~~~~~~~~~g~~~~v~~vd~s~wl~~~v~~~D~VVlKMDIEGaE~~vL~~l~~ 462 (518)
.- +++= ||...-. .- ...+-.-+|.+-+...++++=.+-+|=|.+.-=..+++.+-+
T Consensus 90 ~~i~i~FPDPWpK~r--------------------H~-krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~ 148 (195)
T PF02390_consen 90 DRIYINFPDPWPKKR--------------------HH-KRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEE 148 (195)
T ss_dssp EEEEEES-----SGG--------------------GG-GGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred heEEEeCCCCCcccc--------------------hh-hhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 31 2221 2211100 00 011223356666666666677889999999766667777766
Q ss_pred -cCCcccc
Q 010086 463 -TGAICLI 469 (518)
Q Consensus 463 -~g~i~~I 469 (518)
.+.+..+
T Consensus 149 ~~~~f~~~ 156 (195)
T PF02390_consen 149 SHPGFENI 156 (195)
T ss_dssp HSTTEEEE
T ss_pred cCcCeEEc
Confidence 3555554
No 374
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=50.17 E-value=1.7e+02 Score=31.78 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=38.9
Q ss_pred CCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHh----h--ccCCceEEEeec
Q 010086 317 KNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEE----Y--KVKKKVKLLPYA 376 (518)
Q Consensus 317 ~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~----~--~~~~~V~~~~~A 376 (518)
..+++++|+|+|. |..+ ..+.+.+|.. .++++|.++..... . .+.+||.++..-
T Consensus 121 ~~~p~vLEIGcGs-G~~l-l~lA~~~P~~----~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~D 180 (390)
T PRK14121 121 NQEKILIEIGFGS-GRHL-LYQAKNNPNK----LFIGIEIHTPSIEQVLKQIELLNLKNLLIINYD 180 (390)
T ss_pred CCCCeEEEEcCcc-cHHH-HHHHHhCCCC----CEEEEECCHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 4678999999995 8644 5667778854 89999999865322 2 245788888753
No 375
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=49.32 E-value=65 Score=33.58 Aligned_cols=91 Identities=13% Similarity=0.134 Sum_probs=52.4
Q ss_pred HHHcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCC--C----C-CCCCCce
Q 010086 108 LISEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGH--R----I-PFDGNTF 169 (518)
Q Consensus 108 L~~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~--~----L-Pf~D~SF 169 (518)
+....-++++.+||-.|+|. |..+..+++ .|...+++++.++.. ..++..... . + ...++.+
T Consensus 175 l~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~~~~~ 254 (365)
T cd05279 175 AVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMTDGGV 254 (365)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHhCCCC
Confidence 34445578899999998765 455444443 565557888754311 011111101 0 0 0112458
Q ss_pred eEEEEcCceeeccCChHHHHHHHHhccc-CCcEEEEE
Q 010086 170 DFVFVGGARLEKASKPLDFASEIVRTLK-PEGFAVVH 205 (518)
Q Consensus 170 D~V~s~~~~l~~~~dp~~~l~Ei~RVLK-PGG~lvi~ 205 (518)
|.|+.... ....+.++.+.|+ ++|.++..
T Consensus 255 d~vid~~g-------~~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 255 DYAFEVIG-------SADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred cEEEECCC-------CHHHHHHHHHHhccCCCEEEEE
Confidence 88886532 1246788999999 99998765
No 376
>PTZ00146 fibrillarin; Provisional
Probab=48.81 E-value=28 Score=36.24 Aligned_cols=56 Identities=21% Similarity=0.213 Sum_probs=36.3
Q ss_pred cccCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhh----ccCCceEEEe
Q 010086 314 ISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEY----KVKKKVKLLP 374 (518)
Q Consensus 314 ~s~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~----~~~~~V~~~~ 374 (518)
+.+++...++|+||.. |. .+..+.+...... .|||+|.+|...+.+ ...+||..+.
T Consensus 128 l~IkpG~~VLDLGaG~-G~-~t~~lAdiVG~~G---~VyAVD~s~r~~~dLl~~ak~r~NI~~I~ 187 (293)
T PTZ00146 128 IPIKPGSKVLYLGAAS-GT-TVSHVSDLVGPEG---VVYAVEFSHRSGRDLTNMAKKRPNIVPII 187 (293)
T ss_pred eccCCCCEEEEeCCcC-CH-HHHHHHHHhCCCC---EEEEEECcHHHHHHHHHHhhhcCCCEEEE
Confidence 3457788899999984 75 4466666553211 799999998643322 2346776554
No 377
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=48.78 E-value=1.4e+02 Score=30.09 Aligned_cols=87 Identities=13% Similarity=0.077 Sum_probs=51.8
Q ss_pred CCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCCCC-CCCCceeEEEEcCcee
Q 010086 112 GYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHRIP-FDGNTFDFVFVGGARL 179 (518)
Q Consensus 112 gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~LP-f~D~SFD~V~s~~~~l 179 (518)
..+.++.+||-.|+|. |..+..+++ .| .++++++.++.. ..++........ -..+.+|.|+....
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G-~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~-- 234 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMG-FETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV-- 234 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC--
Confidence 4467889999999874 665544444 56 478888765321 001111100000 01245898887532
Q ss_pred eccCChHHHHHHHHhcccCCcEEEEEe
Q 010086 180 EKASKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
....+.++.+.|+++|.++...
T Consensus 235 -----~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 -----SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred -----cHHHHHHHHHhcccCCEEEEEC
Confidence 1246788999999999887753
No 378
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=48.74 E-value=15 Score=30.63 Aligned_cols=34 Identities=15% Similarity=0.299 Sum_probs=25.2
Q ss_pred EEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchH
Q 010086 323 VDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 323 iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~ 362 (518)
+|+|++ .|. .+.++.+.+|. .+++++|++|...+
T Consensus 1 LdiGcG-~G~-~~~~l~~~~~~----~~~~~~D~s~~~l~ 34 (99)
T PF08242_consen 1 LDIGCG-TGR-LLRALLEELPD----ARYTGVDISPSMLE 34 (99)
T ss_dssp -EESTT-TS--TTTTHHHHC-E----EEEEEEESSSSTTS
T ss_pred CEeCcc-ChH-HHHHHHHhCCC----CEEEEEECCHHHHH
Confidence 699999 485 44788888864 59999999999763
No 379
>PRK03612 spermidine synthase; Provisional
Probab=48.63 E-value=1.7e+02 Score=32.68 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=27.0
Q ss_pred EEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhc
Q 010086 321 VYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYK 365 (518)
Q Consensus 321 V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~ 365 (518)
-++|+|++. |... ..+.+ ||.. -+|..+|.||...+..+
T Consensus 300 rVL~IG~G~-G~~~-~~ll~-~~~v---~~v~~VEid~~vi~~ar 338 (521)
T PRK03612 300 RVLVLGGGD-GLAL-REVLK-YPDV---EQVTLVDLDPAMTELAR 338 (521)
T ss_pred eEEEEcCCc-cHHH-HHHHh-CCCc---CeEEEEECCHHHHHHHH
Confidence 369999984 7533 56665 5531 28999999999765443
No 380
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=48.54 E-value=63 Score=33.01 Aligned_cols=86 Identities=13% Similarity=0.104 Sum_probs=49.4
Q ss_pred CCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCCCC--C-CCCceeEEEEcCce
Q 010086 113 YLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHRIP--F-DGNTFDFVFVGGAR 178 (518)
Q Consensus 113 ll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~LP--f-~D~SFD~V~s~~~~ 178 (518)
-+.++.+||-.|+|. |..+..+++ .| .+++.++.++.. ..++......+. + ....+|+|+....
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G-~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g- 237 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMG-FRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATAP- 237 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECCC-
Confidence 467889999999765 555544443 56 478888765311 001111100000 0 0124788886431
Q ss_pred eeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086 179 LEKASKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 179 l~~~~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
....+.++.+.|+++|.++..-
T Consensus 238 ------~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 238 ------NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred ------chHHHHHHHHHcccCCEEEEEe
Confidence 1246788999999999987653
No 381
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=47.55 E-value=38 Score=34.44 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=26.9
Q ss_pred ceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchH
Q 010086 319 RYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 319 r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~ 362 (518)
..-++|+|+|. |- ++-...+.++. .+|.++|-++...+
T Consensus 45 ~~~IlDlGaG~-G~-l~L~la~r~~~----a~I~~VEiq~~~a~ 82 (248)
T COG4123 45 KGRILDLGAGN-GA-LGLLLAQRTEK----AKIVGVEIQEEAAE 82 (248)
T ss_pred CCeEEEecCCc-CH-HHHHHhccCCC----CcEEEEEeCHHHHH
Confidence 56689999994 73 63344445664 38999999998643
No 382
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=47.15 E-value=1.5e+02 Score=29.73 Aligned_cols=87 Identities=16% Similarity=0.159 Sum_probs=51.4
Q ss_pred HHcCCCCCCCeEEEEcCCC-CHhHHHHH-hcCCCcEEEEecCCCC-------CcEEeccCCCCCCCCCceeEEEEcCcee
Q 010086 109 ISEGYLSQSAKSLCVETQY-GQDVFALK-EIGVEDSIGIFKKSSK-------PLVISGEGHRIPFDGNTFDFVFVGGARL 179 (518)
Q Consensus 109 ~~~gll~~~~rvLDVGcGt-G~~~~~L~-~~g~~~v~gID~s~~~-------~l~~~~da~~LPf~D~SFD~V~s~~~~l 179 (518)
...+.++++.+||-.|+|. |..+..++ ..| .++++++.++.. ..-..-+... +.+...+|.|+....
T Consensus 148 ~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G-~~vi~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~d~vid~~g-- 223 (319)
T cd08242 148 LEQVPITPGDKVAVLGDGKLGLLIAQVLALTG-PDVVLVGRHSEKLALARRLGVETVLPDEA-ESEGGGFDVVVEATG-- 223 (319)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHcCCcEEeCccc-cccCCCCCEEEECCC--
Confidence 3455678899999998764 44443333 357 458887754210 0000001111 124456899887542
Q ss_pred eccCChHHHHHHHHhcccCCcEEEE
Q 010086 180 EKASKPLDFASEIVRTLKPEGFAVV 204 (518)
Q Consensus 180 ~~~~dp~~~l~Ei~RVLKPGG~lvi 204 (518)
....+..+.+.|+++|.+++
T Consensus 224 -----~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 224 -----SPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred -----ChHHHHHHHHHhhcCCEEEE
Confidence 12357788899999999887
No 383
>PRK08317 hypothetical protein; Provisional
Probab=46.85 E-value=38 Score=32.32 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=29.8
Q ss_pred cCCceEEEEeCCCCCCcchhhhhhhhC-CCCCcceEEEEEcCCccchH
Q 010086 316 FKNRYVYVDVGARSYGSSIGSWFKKQY-PKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 316 ~~~r~V~iD~GAn~~g~sv~~~F~~~Y-P~~~~~f~V~afE~np~~~~ 362 (518)
+++...++|+|++. |. ++..+.+.+ |.. +|+++|++|...+
T Consensus 17 ~~~~~~vLdiG~G~-G~-~~~~~a~~~~~~~----~v~~~d~~~~~~~ 58 (241)
T PRK08317 17 VQPGDRVLDVGCGP-GN-DARELARRVGPEG----RVVGIDRSEAMLA 58 (241)
T ss_pred CCCCCEEEEeCCCC-CH-HHHHHHHhcCCCc----EEEEEeCCHHHHH
Confidence 45677899999984 75 445666666 432 7999999998643
No 384
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=46.58 E-value=1.2e+02 Score=33.67 Aligned_cols=94 Identities=18% Similarity=0.180 Sum_probs=55.8
Q ss_pred CCCCeEEEEcCCCCHhHHHHHh-cC----CCcEEEEecCCC--------------C--CcEEeccCCCCC-----CCCCc
Q 010086 115 SQSAKSLCVETQYGQDVFALKE-IG----VEDSIGIFKKSS--------------K--PLVISGEGHRIP-----FDGNT 168 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~-~g----~~~v~gID~s~~--------------~--~l~~~~da~~LP-----f~D~S 168 (518)
.+..+|+|-.||+|.+.....+ .+ ....+|.++.+. . .....+|.-.-| +..+.
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~ 264 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGK 264 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccc
Confidence 4677999999999976532221 21 145788886531 0 011223322223 24477
Q ss_pred eeEEEEcCceee---cc-----------------C----Ch-HHHHHHHHhcccCCcEEEEEecCC
Q 010086 169 FDFVFVGGARLE---KA-----------------S----KP-LDFASEIVRTLKPEGFAVVHVRAK 209 (518)
Q Consensus 169 FD~V~s~~~~l~---~~-----------------~----dp-~~~l~Ei~RVLKPGG~lvi~~~~~ 209 (518)
||+|+++-= +. |. . .. ..+++++.+.|+|||+..+.+..+
T Consensus 265 ~D~viaNPP-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 265 FDFVIANPP-FSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred eeEEEeCCC-CCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 999987642 21 11 0 01 457899999999999877766544
No 385
>PRK10083 putative oxidoreductase; Provisional
Probab=46.56 E-value=35 Score=34.71 Aligned_cols=91 Identities=12% Similarity=0.098 Sum_probs=51.8
Q ss_pred HHHcCCCCCCCeEEEEcCCC-CHhHHHHHh--cCCCcEEEEecCCCC---------CcEEeccC----CCCCCCCCceeE
Q 010086 108 LISEGYLSQSAKSLCVETQY-GQDVFALKE--IGVEDSIGIFKKSSK---------PLVISGEG----HRIPFDGNTFDF 171 (518)
Q Consensus 108 L~~~gll~~~~rvLDVGcGt-G~~~~~L~~--~g~~~v~gID~s~~~---------~l~~~~da----~~LPf~D~SFD~ 171 (518)
+....-++++.+||-.|+|. |..+..+++ .|...+++++.++.. ..++.... +.++=....+|.
T Consensus 152 ~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~ 231 (339)
T PRK10083 152 VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTL 231 (339)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCE
Confidence 33445578899999999765 555555554 376568888764310 01111000 011101123567
Q ss_pred EEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 172 VFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 172 V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
|+.... . ...+.+..+.|+++|.++..
T Consensus 232 vid~~g------~-~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 232 IIDAAC------H-PSILEEAVTLASPAARIVLM 258 (339)
T ss_pred EEECCC------C-HHHHHHHHHHhhcCCEEEEE
Confidence 776432 1 23578899999999998764
No 386
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=46.56 E-value=56 Score=32.11 Aligned_cols=88 Identities=15% Similarity=0.187 Sum_probs=51.4
Q ss_pred cCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCCCcE--EeccCCC-CC-----CCCCceeEEEEcCceee
Q 010086 111 EGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSKPLV--ISGEGHR-IP-----FDGNTFDFVFVGGARLE 180 (518)
Q Consensus 111 ~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~~l~--~~~da~~-LP-----f~D~SFD~V~s~~~~l~ 180 (518)
.+.++++.++|-.|+|. |..+..+++ .|...+++++.++..... ..+.+.. +. .+...+|+|+....
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~--- 168 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASG--- 168 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccC---
Confidence 34567899999998875 555544443 564338888865311000 0010000 00 12346899887532
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEE
Q 010086 181 KASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 181 ~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
....+.++.+.|+++|.++..
T Consensus 169 ----~~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 169 ----SPSALETALRLLRDRGRVVLV 189 (277)
T ss_pred ----ChHHHHHHHHHhcCCcEEEEE
Confidence 123578899999999998764
No 387
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=46.21 E-value=77 Score=33.81 Aligned_cols=93 Identities=10% Similarity=0.035 Sum_probs=52.7
Q ss_pred CCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC--------CcEEec-cCCC----C-C-CCCCceeEEEE
Q 010086 112 GYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK--------PLVISG-EGHR----I-P-FDGNTFDFVFV 174 (518)
Q Consensus 112 gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~--------~l~~~~-da~~----L-P-f~D~SFD~V~s 174 (518)
.-++++++||-.|+|. |..+..+++ .|...++.+|.++.. ...+.. .... + . .....+|+|+.
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid 260 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDCAVD 260 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcEEEE
Confidence 4467889998888876 666544544 575556666654310 001110 0000 0 0 12235899987
Q ss_pred cCceeec--------cCChHHHHHHHHhcccCCcEEEEE
Q 010086 175 GGARLEK--------ASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 175 ~~~~l~~--------~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
... -.. ..++...+++....+|+||.+++.
T Consensus 261 ~~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 261 CVG-FEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred CCC-CccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence 543 110 012235789999999999998775
No 388
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=46.08 E-value=40 Score=32.64 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=35.4
Q ss_pred CCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHh----hc--cCCceEEEee
Q 010086 317 KNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEE----YK--VKKKVKLLPY 375 (518)
Q Consensus 317 ~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~----~~--~~~~V~~~~~ 375 (518)
+++..++|+|++. |. .+.++.+..+.. -.|+++|.+|...+. +. ...+|+++..
T Consensus 76 ~~~~~VLDiG~Gs-G~-~a~~la~~~~~~---g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~ 135 (215)
T TIGR00080 76 KPGMKVLEIGTGS-GY-QAAVLAEIVGRD---GLVVSIERIPELAEKAERRLRKLGLDNVIVIVG 135 (215)
T ss_pred CCcCEEEEECCCc-cH-HHHHHHHHhCCC---CEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEEC
Confidence 4567899999994 75 445666665431 269999999987542 22 2356666653
No 389
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=45.92 E-value=50 Score=33.65 Aligned_cols=87 Identities=13% Similarity=0.182 Sum_probs=50.5
Q ss_pred CCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEecc---CCCC-CC-CCCceeEEEEc
Q 010086 112 GYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGE---GHRI-PF-DGNTFDFVFVG 175 (518)
Q Consensus 112 gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~d---a~~L-Pf-~D~SFD~V~s~ 175 (518)
..++++.+||..|+|+ |..+..+++ .|...+++++.++.. ..++... .+.+ .+ +...||+|+..
T Consensus 155 ~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~ 234 (343)
T cd08236 155 AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEA 234 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEEC
Confidence 3467889999998765 555544443 564348888754210 0111111 0110 12 22348999875
Q ss_pred CceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 176 GARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
.. ....+.++.+.|+++|.++..
T Consensus 235 ~g-------~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 235 AG-------SPATIEQALALARPGGKVVLV 257 (343)
T ss_pred CC-------CHHHHHHHHHHhhcCCEEEEE
Confidence 32 234678999999999997664
No 390
>PRK11524 putative methyltransferase; Provisional
Probab=45.72 E-value=36 Score=34.78 Aligned_cols=46 Identities=17% Similarity=0.043 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC
Q 010086 102 SSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS 149 (518)
Q Consensus 102 ~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~ 149 (518)
..++++++... -.+|+.|||-=||+|..+.+..+.| .+.+|+|+++
T Consensus 195 ~~L~erlI~~~-S~~GD~VLDPF~GSGTT~~AA~~lg-R~~IG~Ei~~ 240 (284)
T PRK11524 195 EALLKRIILAS-SNPGDIVLDPFAGSFTTGAVAKASG-RKFIGIEINS 240 (284)
T ss_pred HHHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHcC-CCEEEEeCCH
Confidence 35555555432 3689999999999999888877888 7999999874
No 391
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=45.32 E-value=77 Score=32.43 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=48.0
Q ss_pred CCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCCCC-----CCCCceeEEEEcCc
Q 010086 114 LSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHRIP-----FDGNTFDFVFVGGA 177 (518)
Q Consensus 114 l~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~LP-----f~D~SFD~V~s~~~ 177 (518)
..++.+||-.|+|. |..+..+++ .|...+++++-++.. ..++.....+.+ .+.+.+|+|+....
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~g 240 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMSG 240 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcccccHHHHHHHcCCCCCCEEEECCC
Confidence 46788898887754 555444443 564367777543210 001111111110 12346899887542
Q ss_pred eeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 178 RLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 178 ~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
......++.+.|+|+|.++..
T Consensus 241 -------~~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 241 -------NPKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred -------CHHHHHHHHHHhccCCEEEEE
Confidence 123578899999999998754
No 392
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=45.21 E-value=31 Score=33.50 Aligned_cols=50 Identities=18% Similarity=0.338 Sum_probs=34.0
Q ss_pred ceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhcc-CCceEEEe
Q 010086 319 RYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYKV-KKKVKLLP 374 (518)
Q Consensus 319 r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~~-~~~V~~~~ 374 (518)
..-++|+|+| .|... ..+.+.+|. .+|+++|.+|...+..+. .++++++.
T Consensus 44 ~~~VLDiGCG-~G~~~-~~L~~~~~~----~~v~giDiS~~~l~~A~~~~~~~~~~~ 94 (204)
T TIGR03587 44 IASILELGAN-IGMNL-AALKRLLPF----KHIYGVEINEYAVEKAKAYLPNINIIQ 94 (204)
T ss_pred CCcEEEEecC-CCHHH-HHHHHhCCC----CeEEEEECCHHHHHHHHhhCCCCcEEE
Confidence 4458999999 48533 667666663 389999999987665543 35554443
No 393
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=45.08 E-value=29 Score=33.20 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=28.9
Q ss_pred ccCCceEEEEeCCCCCCcchhhhh-hhhCCCCCcceEEEEEcCCccchH
Q 010086 315 SFKNRYVYVDVGARSYGSSIGSWF-KKQYPKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 315 s~~~r~V~iD~GAn~~g~sv~~~F-~~~YP~~~~~f~V~afE~np~~~~ 362 (518)
...++..++|+|++. |. ++-.+ +...|.. .|+++|.+|...+
T Consensus 37 ~~~~~~~vlDlG~Gt-G~-~s~~~a~~~~~~~----~v~avD~~~~~~~ 79 (198)
T PRK00377 37 RLRKGDMILDIGCGT-GS-VTVEASLLVGETG----KVYAVDKDEKAIN 79 (198)
T ss_pred CCCCcCEEEEeCCcC-CH-HHHHHHHHhCCCC----EEEEEECCHHHHH
Confidence 456788999999995 74 42233 2234433 7999999998654
No 394
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=44.98 E-value=51 Score=34.07 Aligned_cols=37 Identities=11% Similarity=0.122 Sum_probs=26.8
Q ss_pred CCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCC
Q 010086 112 GYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKS 149 (518)
Q Consensus 112 gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~ 149 (518)
.-++++.+||-.|+|+ |..+..+++ .| .+++++|.++
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G-~~vi~~~~~~ 200 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMG-AAVVAIDIDP 200 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCH
Confidence 4467899999999976 666655544 56 4788888653
No 395
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=44.65 E-value=1.6e+02 Score=30.85 Aligned_cols=87 Identities=15% Similarity=0.144 Sum_probs=51.9
Q ss_pred CCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEecc----------CCCCCCCCCcee
Q 010086 112 GYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGE----------GHRIPFDGNTFD 170 (518)
Q Consensus 112 gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~d----------a~~LPf~D~SFD 170 (518)
+-++++.+||-.|+|. |..+..+++ .|...+++++.++.. ..++... ..++ .+...+|
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~-~~g~gvD 277 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEV-TKGWGAD 277 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHh-cCCCCCC
Confidence 4567889998888765 554444443 574478888754310 0011100 0111 1234589
Q ss_pred EEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 171 FVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 171 ~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
+|+.... .+...+.++.|.|+++|+++..
T Consensus 278 vvld~~g------~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 278 IQVEAAG------APPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred EEEECCC------CcHHHHHHHHHHHHcCCEEEEE
Confidence 8887532 2345688999999999998764
No 396
>PLN02702 L-idonate 5-dehydrogenase
Probab=44.65 E-value=2.4e+02 Score=29.16 Aligned_cols=88 Identities=9% Similarity=0.023 Sum_probs=50.5
Q ss_pred cCCCCCCCeEEEEcCCC-CHhHHHHH-hcCCCcEEEEecCCCC---------CcEEeccCCCCC----------CCCCce
Q 010086 111 EGYLSQSAKSLCVETQY-GQDVFALK-EIGVEDSIGIFKKSSK---------PLVISGEGHRIP----------FDGNTF 169 (518)
Q Consensus 111 ~gll~~~~rvLDVGcGt-G~~~~~L~-~~g~~~v~gID~s~~~---------~l~~~~da~~LP----------f~D~SF 169 (518)
...+.++.++|-+|+|. |..+..++ ..|...++.++.++.. .....-+.++.+ -....+
T Consensus 176 ~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (364)
T PLN02702 176 RANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGI 255 (364)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCC
Confidence 34467888999998764 44444443 4675567888754210 001100101000 113458
Q ss_pred eEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 170 DFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 170 D~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
|.|+.... ....+.++.+.|+++|.++..
T Consensus 256 d~vid~~g-------~~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 256 DVSFDCVG-------FNKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred CEEEECCC-------CHHHHHHHHHHHhcCCEEEEE
Confidence 88887542 124688999999999997654
No 397
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=44.39 E-value=45 Score=35.03 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=24.7
Q ss_pred ceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchH
Q 010086 319 RYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 319 r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~ 362 (518)
++.++|+|+|+ |= . .|-+ -..+.+ .|.+|||++.+.-
T Consensus 116 gk~VLDIGC~n-GY-~-~frM--~~~GA~--~ViGiDP~~lf~~ 152 (315)
T PF08003_consen 116 GKRVLDIGCNN-GY-Y-SFRM--LGRGAK--SVIGIDPSPLFYL 152 (315)
T ss_pred CCEEEEecCCC-cH-H-HHHH--hhcCCC--EEEEECCChHHHH
Confidence 67899999995 52 2 3333 333323 7999999998643
No 398
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=43.88 E-value=2.7e+02 Score=27.09 Aligned_cols=88 Identities=17% Similarity=0.061 Sum_probs=49.5
Q ss_pred HcCCCCCCCeEEEEcC-CC-CHhHHHHHh-cCCCcEEEEecCCCC--------CcEEeccCCCC--CCCCCceeEEEEcC
Q 010086 110 SEGYLSQSAKSLCVET-QY-GQDVFALKE-IGVEDSIGIFKKSSK--------PLVISGEGHRI--PFDGNTFDFVFVGG 176 (518)
Q Consensus 110 ~~gll~~~~rvLDVGc-Gt-G~~~~~L~~-~g~~~v~gID~s~~~--------~l~~~~da~~L--Pf~D~SFD~V~s~~ 176 (518)
..+.+.++.++|-.|+ |. |..+..+++ .| .+++.++.++.. ...+....... .-....+|.++...
T Consensus 138 ~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~v~~~~ 216 (309)
T cd05289 138 ELGGLKAGQTVLIHGAAGGVGSFAVQLAKARG-ARVIATASAANADFLRSLGADEVIDYTKGDFERAAAPGGVDAVLDTV 216 (309)
T ss_pred hhcCCCCCCEEEEecCCchHHHHHHHHHHHcC-CEEEEEecchhHHHHHHcCCCEEEeCCCCchhhccCCCCceEEEECC
Confidence 3344678899999997 32 555444433 56 467766643210 00111111111 12334688888754
Q ss_pred ceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086 177 ARLEKASKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
. ...+.++.+.|+++|.++...
T Consensus 217 ~--------~~~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 217 G--------GETLARSLALVKPGGRLVSIA 238 (309)
T ss_pred c--------hHHHHHHHHHHhcCcEEEEEc
Confidence 2 126788899999999987653
No 399
>PRK13699 putative methylase; Provisional
Probab=43.73 E-value=43 Score=33.26 Aligned_cols=46 Identities=24% Similarity=0.188 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCC
Q 010086 102 SSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKS 149 (518)
Q Consensus 102 ~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~ 149 (518)
..+++.++.. +-.+|+.|||-=||+|..+.+..+.| .+.+|+|+++
T Consensus 150 ~~l~~~~i~~-~s~~g~~vlDpf~Gsgtt~~aa~~~~-r~~~g~e~~~ 195 (227)
T PRK13699 150 VTSLQPLIES-FTHPNAIVLDPFAGSGSTCVAALQSG-RRYIGIELLE 195 (227)
T ss_pred HHHHHHHHHH-hCCCCCEEEeCCCCCCHHHHHHHHcC-CCEEEEecCH
Confidence 3555555542 34689999999999999988877777 7999999874
No 400
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=43.57 E-value=24 Score=37.64 Aligned_cols=77 Identities=14% Similarity=0.059 Sum_probs=56.1
Q ss_pred HcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCC------------------------CCcEEeccCCCCCCC
Q 010086 110 SEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSS------------------------KPLVISGEGHRIPFD 165 (518)
Q Consensus 110 ~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~------------------------~~l~~~~da~~LPf~ 165 (518)
..+.+++|+-|+|==.|||.+....+..| +-|+|.|+.-. ...+..+|..+-|..
T Consensus 202 N~Amv~pGdivyDPFVGTGslLvsaa~FG-a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~r 280 (421)
T KOG2671|consen 202 NQAMVKPGDIVYDPFVGTGSLLVSAAHFG-AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLR 280 (421)
T ss_pred hhhccCCCCEEecCccccCceeeehhhhc-ceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchh
Confidence 34568999999998889988877777777 78999998510 112456788887774
Q ss_pred -CCceeEEEEcCceeeccCChHHHHHHHHhcc
Q 010086 166 -GNTFDFVFVGGARLEKASKPLDFASEIVRTL 196 (518)
Q Consensus 166 -D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVL 196 (518)
...||.|+|- |.-.++|-.|.+
T Consensus 281 sn~~fDaIvcD---------PPYGVRe~~rk~ 303 (421)
T KOG2671|consen 281 SNLKFDAIVCD---------PPYGVREGARKT 303 (421)
T ss_pred hcceeeEEEeC---------CCcchhhhhhhh
Confidence 6689999983 445567777765
No 401
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=43.19 E-value=1.1e+02 Score=32.47 Aligned_cols=82 Identities=15% Similarity=0.089 Sum_probs=48.5
Q ss_pred CCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC-C---------cEEec-cCCCC-CCCCCceeEEEEcCceee
Q 010086 115 SQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK-P---------LVISG-EGHRI-PFDGNTFDFVFVGGARLE 180 (518)
Q Consensus 115 ~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~-~---------l~~~~-da~~L-Pf~D~SFD~V~s~~~~l~ 180 (518)
+++.+||-.|+|. |..+..+++ .| .++++++.++.. . .++.. +.+.+ ... +.+|+|+....
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~G-a~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~-~~~D~vid~~G--- 251 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFG-LRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAV-GTMDFIIDTVS--- 251 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcC-CeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhh-CCCcEEEECCC---
Confidence 5789999999876 666555544 56 578888865311 0 01110 00000 000 23788887542
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEE
Q 010086 181 KASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 181 ~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
....+.+..+.|++||.++..
T Consensus 252 ----~~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 252 ----AEHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred ----cHHHHHHHHHhhcCCCEEEEE
Confidence 123578889999999998764
No 402
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=42.73 E-value=2.2e+02 Score=29.06 Aligned_cols=88 Identities=11% Similarity=0.084 Sum_probs=49.4
Q ss_pred cCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCC----C-CC-CCCceeEEE
Q 010086 111 EGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHR----I-PF-DGNTFDFVF 173 (518)
Q Consensus 111 ~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~----L-Pf-~D~SFD~V~ 173 (518)
..-+.++.++|-.|+|. |..+..+++ .|...+++++.++.. ..++.....+ + .+ ++..+|+|+
T Consensus 161 ~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vl 240 (345)
T cd08286 161 NGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVVI 240 (345)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHhCCCCCCEEE
Confidence 33467888998888754 444433433 564578887754311 0111111000 0 01 234588888
Q ss_pred EcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 174 VGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 174 s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
.... . ...+.++.|.|+++|.++..
T Consensus 241 d~~g------~-~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 241 EAVG------I-PATFELCQELVAPGGHIANV 265 (345)
T ss_pred ECCC------C-HHHHHHHHHhccCCcEEEEe
Confidence 6432 1 23578888999999998754
No 403
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=42.12 E-value=42 Score=37.22 Aligned_cols=95 Identities=12% Similarity=0.084 Sum_probs=55.2
Q ss_pred HHHHHHHHc-CCCCCCCeEEEEcCCC-CHhH-HHHHhcCCCcEEEEecCCCCCcE-EeccCCCCCCC--CCceeEEEEcC
Q 010086 103 SVFQDLISE-GYLSQSAKSLCVETQY-GQDV-FALKEIGVEDSIGIFKKSSKPLV-ISGEGHRIPFD--GNTFDFVFVGG 176 (518)
Q Consensus 103 ~l~~~L~~~-gll~~~~rvLDVGcGt-G~~~-~~L~~~g~~~v~gID~s~~~~l~-~~~da~~LPf~--D~SFD~V~s~~ 176 (518)
++...++.. +..-.|.+++-+|+|. |..+ ..++..| .+|+.+|.++..... ........++. -...|+|++.-
T Consensus 239 s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~G-a~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~at 317 (476)
T PTZ00075 239 SLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFG-ARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTAT 317 (476)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECC
Confidence 344444443 3344688999999998 6544 4455567 589999876432110 00001111221 13579998754
Q ss_pred ceeeccCChHHHH-HHHHhcccCCcEEEEE
Q 010086 177 ARLEKASKPLDFA-SEIVRTLKPEGFAVVH 205 (518)
Q Consensus 177 ~~l~~~~dp~~~l-~Ei~RVLKPGG~lvi~ 205 (518)
. -.| ++ .|....+|||++++-.
T Consensus 318 G-t~~------iI~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 318 G-NKD------IITLEHMRRMKNNAIVGNI 340 (476)
T ss_pred C-ccc------ccCHHHHhccCCCcEEEEc
Confidence 3 222 23 4788899999998875
No 404
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=41.76 E-value=26 Score=31.65 Aligned_cols=38 Identities=24% Similarity=0.419 Sum_probs=27.9
Q ss_pred CceeEEEEcCceeeccCChH----HHHHHHHhcccCCcEEEEEe
Q 010086 167 NTFDFVFVGGARLEKASKPL----DFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 167 ~SFD~V~s~~~~l~~~~dp~----~~l~Ei~RVLKPGG~lvi~~ 206 (518)
..||+|+--. |.--.||+ .+++++.|.++|||+++--+
T Consensus 49 ~~~Da~ylDg--FsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys 90 (124)
T PF05430_consen 49 ARFDAWYLDG--FSPAKNPELWSEELFKKLARLSKPGGTLATYS 90 (124)
T ss_dssp T-EEEEEE-S--S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES-
T ss_pred ccCCEEEecC--CCCcCCcccCCHHHHHHHHHHhCCCcEEEEee
Confidence 7899999864 66556774 78999999999999876633
No 405
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=41.35 E-value=1.3e+02 Score=32.15 Aligned_cols=88 Identities=14% Similarity=0.075 Sum_probs=50.2
Q ss_pred CCCCCCCeEEEEc-CCC-CHhHHHHHh-cC--CCcEEEEecCCCC-----C-------------cEEeccC-CCC-----
Q 010086 112 GYLSQSAKSLCVE-TQY-GQDVFALKE-IG--VEDSIGIFKKSSK-----P-------------LVISGEG-HRI----- 162 (518)
Q Consensus 112 gll~~~~rvLDVG-cGt-G~~~~~L~~-~g--~~~v~gID~s~~~-----~-------------l~~~~da-~~L----- 162 (518)
..++++++||-+| +|. |..+..+++ .| ..+|+++|.++.. . .++.... .++
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLM 250 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHH
Confidence 4567889999998 464 666655554 33 3479999876321 0 0111000 000
Q ss_pred CC-CCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086 163 PF-DGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 163 Pf-~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
.+ ....||.|+.... . ...+.+..+.|+++|.+++..
T Consensus 251 ~~t~g~g~D~vid~~g------~-~~~~~~a~~~l~~~G~~v~~~ 288 (410)
T cd08238 251 ELTGGQGFDDVFVFVP------V-PELVEEADTLLAPDGCLNFFA 288 (410)
T ss_pred HHhCCCCCCEEEEcCC------C-HHHHHHHHHHhccCCeEEEEE
Confidence 01 2235888876432 1 246788899999988766543
No 406
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=41.22 E-value=38 Score=33.67 Aligned_cols=52 Identities=13% Similarity=0.275 Sum_probs=36.0
Q ss_pred cCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhccCCceEEEe
Q 010086 316 FKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYKVKKKVKLLP 374 (518)
Q Consensus 316 ~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~~~~~V~~~~ 374 (518)
.++...++|+|+| -|. ++..+.+.+|.. +|+++|++|...+.-+. .+++++.
T Consensus 27 ~~~~~~vLDlGcG-~G~-~~~~l~~~~p~~----~v~gvD~s~~~~~~a~~-~~~~~~~ 78 (255)
T PRK14103 27 AERARRVVDLGCG-PGN-LTRYLARRWPGA----VIEALDSSPEMVAAARE-RGVDART 78 (255)
T ss_pred CCCCCEEEEEcCC-CCH-HHHHHHHHCCCC----EEEEEECCHHHHHHHHh-cCCcEEE
Confidence 4566788999999 485 556777777743 79999999986543322 3455443
No 407
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=40.46 E-value=1.6e+02 Score=29.92 Aligned_cols=87 Identities=18% Similarity=0.146 Sum_probs=51.6
Q ss_pred cCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCC----CC--CCCCCceeEEE
Q 010086 111 EGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGH----RI--PFDGNTFDFVF 173 (518)
Q Consensus 111 ~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~----~L--Pf~D~SFD~V~ 173 (518)
..-+.++.+||..|+|. |..+..+++ .| .+++++..++.. ..++..... .+ -.++..+|+++
T Consensus 154 ~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g-~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vl 232 (337)
T cd08261 154 RAGVTAGDTVLVVGAGPIGLGVIQVAKARG-ARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVI 232 (337)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEE
Confidence 34567899999998764 555555544 56 577777543210 011111100 01 12345689998
Q ss_pred EcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 174 VGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 174 s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
.... ....+.++.+.|+++|.++..
T Consensus 233 d~~g-------~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 233 DATG-------NPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred ECCC-------CHHHHHHHHHHHhcCCEEEEE
Confidence 7642 124578999999999997754
No 408
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=40.01 E-value=1.1e+02 Score=31.15 Aligned_cols=86 Identities=13% Similarity=0.063 Sum_probs=48.6
Q ss_pred CCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCC----C--CCCCCceeEEEEc
Q 010086 113 YLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHR----I--PFDGNTFDFVFVG 175 (518)
Q Consensus 113 ll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~----L--Pf~D~SFD~V~s~ 175 (518)
.+.++.++|-.|+|. |..+..+++ .|...+++++.++.. ..++.....+ + .-+...||+|+..
T Consensus 158 ~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~ 237 (340)
T TIGR00692 158 GPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEM 237 (340)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEEC
Confidence 356788888877653 444444444 564347777543210 0111111111 0 1134568999875
Q ss_pred CceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 176 GARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 176 ~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
.. ....+.++.+.|+++|.++..
T Consensus 238 ~g-------~~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 238 SG-------APKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred CC-------CHHHHHHHHHhhcCCCEEEEE
Confidence 32 124688999999999998654
No 409
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=39.96 E-value=39 Score=28.71 Aligned_cols=36 Identities=19% Similarity=0.125 Sum_probs=26.5
Q ss_pred eEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchH
Q 010086 320 YVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 320 ~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~ 362 (518)
..++|.|++. |..+ -.+.+.++ .+++++|.||...+
T Consensus 2 ~~vlD~~~G~-G~~~-~~~~~~~~-----~~~~gvdi~~~~~~ 37 (117)
T PF13659_consen 2 DRVLDPGCGS-GTFL-LAALRRGA-----ARVTGVDIDPEAVE 37 (117)
T ss_dssp EEEEEETSTT-CHHH-HHHHHHCT-----CEEEEEESSHHHHH
T ss_pred CEEEEcCcch-HHHH-HHHHHHCC-----CeEEEEEECHHHHH
Confidence 5689999994 8633 56666652 38999999998643
No 410
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=39.12 E-value=1.4e+02 Score=30.75 Aligned_cols=110 Identities=13% Similarity=0.109 Sum_probs=55.7
Q ss_pred HHhhHHHHHHHHHHc-CCCCCCCeEEEEcCCCCHh----HHHHHh-cC-CCcEEEEecCCC---CCcEEeccCCCCCCCC
Q 010086 97 AVNFYSSVFQDLISE-GYLSQSAKSLCVETQYGQD----VFALKE-IG-VEDSIGIFKKSS---KPLVISGEGHRIPFDG 166 (518)
Q Consensus 97 ~v~~~~~l~~~L~~~-gll~~~~rvLDVGcGtG~~----~~~L~~-~g-~~~v~gID~s~~---~~l~~~~da~~LPf~D 166 (518)
.+..|+++.+-|-.. --++...|||.+|+|+-.. +.-|++ ++ ..-++-.|+.++ ....+.+|-+.... +
T Consensus 41 NV~KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vSDa~~~~~~Dc~t~~~-~ 119 (299)
T PF06460_consen 41 NVAKYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVSDADQSIVGDCRTYMP-P 119 (299)
T ss_dssp HHHHHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-SSSEEEES-GGGEEE-S
T ss_pred eHHHHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhccccCCceeccccccCC-C
Confidence 466788888887442 2356789999999998432 244665 22 134555566543 23345677666544 5
Q ss_pred CceeEEEEcCc--eeecc----CChHH----HHHHHHhcccCCcEEEEEec
Q 010086 167 NTFDFVFVGGA--RLEKA----SKPLD----FASEIVRTLKPEGFAVVHVR 207 (518)
Q Consensus 167 ~SFD~V~s~~~--~l~~~----~dp~~----~l~Ei~RVLKPGG~lvi~~~ 207 (518)
..||+|+|-.+ ...++ ...+. ...-|..-|.=||-+++-+.
T Consensus 120 ~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiT 170 (299)
T PF06460_consen 120 DKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKIT 170 (299)
T ss_dssp S-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEee
Confidence 67999999652 01111 11222 34556677889999999754
No 411
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=39.01 E-value=2e+02 Score=29.66 Aligned_cols=36 Identities=14% Similarity=0.047 Sum_probs=25.1
Q ss_pred ceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchH
Q 010086 319 RYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 319 r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~ 362 (518)
...++|+|++ .|. ++-.+.+ . ..+|+++|.++...+
T Consensus 174 ~~~VLDl~cG-~G~-~sl~la~-~-----~~~V~gvD~s~~av~ 209 (315)
T PRK03522 174 PRSMWDLFCG-VGG-FGLHCAT-P-----GMQLTGIEISAEAIA 209 (315)
T ss_pred CCEEEEccCC-CCH-HHHHHHh-c-----CCEEEEEeCCHHHHH
Confidence 3579999999 474 5445543 1 128999999998643
No 412
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=38.50 E-value=30 Score=34.50 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=25.0
Q ss_pred cCCceEEEEeCCCCCCcchhh-hhhhhCCCCCcceEEEEEcCCccchHh
Q 010086 316 FKNRYVYVDVGARSYGSSIGS-WFKKQYPKQNKTFDVYAIEADKTFHEE 363 (518)
Q Consensus 316 ~~~r~V~iD~GAn~~g~sv~~-~F~~~YP~~~~~f~V~afE~np~~~~~ 363 (518)
..+....+||||+ +|- |+. .+.+.+- +|-.+||++.|.+.
T Consensus 53 ~~~~~~alDcGAG-IGR-VTk~lLl~~f~------~VDlVEp~~~Fl~~ 93 (218)
T PF05891_consen 53 KPKFNRALDCGAG-IGR-VTKGLLLPVFD------EVDLVEPVEKFLEQ 93 (218)
T ss_dssp ----SEEEEET-T-TTH-HHHHTCCCC-S------EEEEEES-HHHHHH
T ss_pred CCCcceEEecccc-cch-hHHHHHHHhcC------EeEEeccCHHHHHH
Confidence 4467889999999 785 764 4444332 89999999998653
No 413
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=38.19 E-value=37 Score=31.53 Aligned_cols=68 Identities=19% Similarity=0.213 Sum_probs=40.6
Q ss_pred CceeEEEEcCceeecc-----CChH---HHHHHHHhcccCCcEEEEEec--CCCcc-Cchh---H-hhh-ccCccEEEEe
Q 010086 167 NTFDFVFVGGARLEKA-----SKPL---DFASEIVRTLKPEGFAVVHVR--AKDEY-SFNS---F-LDL-FNSCKLVKSR 230 (518)
Q Consensus 167 ~SFD~V~s~~~~l~~~-----~dp~---~~l~Ei~RVLKPGG~lvi~~~--~~~~~-s~~~---~-~~l-f~~~~~v~~~ 230 (518)
+.+|+|+.+.++|..- ..|+ .+++.+.+.|+|||++++.+. |.... +... + ..| .++|++.+..
T Consensus 45 ~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~ 124 (140)
T PF06962_consen 45 GPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQ 124 (140)
T ss_dssp --EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEE
T ss_pred CCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEE
Confidence 5899999887656442 2333 678999999999999988864 33221 1112 2 223 3578888877
Q ss_pred ccCC
Q 010086 231 DIDG 234 (518)
Q Consensus 231 ~v~~ 234 (518)
-++-
T Consensus 125 ~~N~ 128 (140)
T PF06962_consen 125 FINQ 128 (140)
T ss_dssp ESS-
T ss_pred ccCC
Confidence 7653
No 414
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=38.11 E-value=42 Score=32.41 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=29.8
Q ss_pred CCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchH
Q 010086 317 KNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 317 ~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~ 362 (518)
+++..++|+|++. |. .+.++.+..+.. -+|+++|.+|...+
T Consensus 71 ~~~~~VLDiG~Gs-G~-~~~~la~~~~~~---g~V~~iD~~~~~~~ 111 (205)
T PRK13944 71 RPGMKILEVGTGS-GY-QAAVCAEAIERR---GKVYTVEIVKELAI 111 (205)
T ss_pred CCCCEEEEECcCc-cH-HHHHHHHhcCCC---CEEEEEeCCHHHHH
Confidence 4567799999994 75 445777666532 27999999998654
No 415
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=37.76 E-value=69 Score=30.97 Aligned_cols=41 Identities=10% Similarity=0.102 Sum_probs=28.9
Q ss_pred cCCceEEEEeCCCCCCcchhhhhhhhC-CCCCcceEEEEEcCCccchH
Q 010086 316 FKNRYVYVDVGARSYGSSIGSWFKKQY-PKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 316 ~~~r~V~iD~GAn~~g~sv~~~F~~~Y-P~~~~~f~V~afE~np~~~~ 362 (518)
+++...++|+|++. |. ++..+.+.+ |. .+|+++|.+|...+
T Consensus 43 ~~~~~~vLDiGcG~-G~-~~~~la~~~~~~----~~v~gvD~s~~~~~ 84 (231)
T TIGR02752 43 VQAGTSALDVCCGT-AD-WSIALAEAVGPE----GHVIGLDFSENMLS 84 (231)
T ss_pred CCCCCEEEEeCCCc-CH-HHHHHHHHhCCC----CEEEEEECCHHHHH
Confidence 35667899999984 75 434555554 43 27999999998654
No 416
>PRK06202 hypothetical protein; Provisional
Probab=37.74 E-value=45 Score=32.57 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=29.6
Q ss_pred CCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHh
Q 010086 317 KNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEE 363 (518)
Q Consensus 317 ~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~ 363 (518)
.+...++|+|+| .|. ++..+.+.++..+.+.+|.++|++|...+.
T Consensus 59 ~~~~~iLDlGcG-~G~-~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~ 103 (232)
T PRK06202 59 DRPLTLLDIGCG-GGD-LAIDLARWARRDGLRLEVTAIDPDPRAVAF 103 (232)
T ss_pred CCCcEEEEeccC-CCH-HHHHHHHHHHhCCCCcEEEEEcCCHHHHHH
Confidence 455678999999 475 434444433322223489999999987554
No 417
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=37.64 E-value=78 Score=33.86 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=36.8
Q ss_pred cCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhccCCceEEEee
Q 010086 316 FKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYKVKKKVKLLPY 375 (518)
Q Consensus 316 ~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~~~~~V~~~~~ 375 (518)
+.++..++|+||.- |. ++..+.+ . +..|+|+|..| +.+++...++|+.+..
T Consensus 209 ~~~g~~vlDLGAsP-GG-WT~~L~~-r-----G~~V~AVD~g~-l~~~L~~~~~V~h~~~ 259 (357)
T PRK11760 209 LAPGMRAVDLGAAP-GG-WTYQLVR-R-----GMFVTAVDNGP-MAQSLMDTGQVEHLRA 259 (357)
T ss_pred cCCCCEEEEeCCCC-cH-HHHHHHH-c-----CCEEEEEechh-cCHhhhCCCCEEEEec
Confidence 56899999999974 63 7444443 2 34899999555 6677777888887763
No 418
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=37.58 E-value=52 Score=34.43 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHh-cCCCcEEEEecCC
Q 010086 102 SSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKE-IGVEDSIGIFKKS 149 (518)
Q Consensus 102 ~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~-~g~~~v~gID~s~ 149 (518)
+-+++++++.-.+++++.++|.=+|.|..+.++.+ .+.+.++|+|.++
T Consensus 6 pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~ 54 (305)
T TIGR00006 6 SVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDP 54 (305)
T ss_pred chhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCH
Confidence 44555555544467888999999999998877665 3347999999864
No 419
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=37.27 E-value=1.6e+02 Score=30.36 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=48.7
Q ss_pred CCCeEEEEcCCC-CHhH-HHHHhcCCCcEEEEecCCCCCcEE-eccCCCCCCC-----CCceeEEEEcCceeeccCChHH
Q 010086 116 QSAKSLCVETQY-GQDV-FALKEIGVEDSIGIFKKSSKPLVI-SGEGHRIPFD-----GNTFDFVFVGGARLEKASKPLD 187 (518)
Q Consensus 116 ~~~rvLDVGcGt-G~~~-~~L~~~g~~~v~gID~s~~~~l~~-~~da~~LPf~-----D~SFD~V~s~~~~l~~~~dp~~ 187 (518)
.+.+++-+|+|. |..+ ..|+..| .+|+.+|.++...... .-.....+++ -..+|+|+..-. +..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p-------~~~ 222 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG-ANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIP-------ALV 222 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCC-------hhh
Confidence 578999999997 4433 5556678 5999999764210000 0001111111 146899998531 112
Q ss_pred HHHHHHhcccCCcEEEEEe
Q 010086 188 FASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 188 ~l~Ei~RVLKPGG~lvi~~ 206 (518)
.-+++...++||++++-..
T Consensus 223 i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 223 LTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred hhHHHHHcCCCCcEEEEEc
Confidence 3467788899988776544
No 420
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=36.48 E-value=1.4e+02 Score=30.42 Aligned_cols=88 Identities=10% Similarity=0.079 Sum_probs=50.4
Q ss_pred HcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccC-CCC-----CCCCCceeEE
Q 010086 110 SEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEG-HRI-----PFDGNTFDFV 172 (518)
Q Consensus 110 ~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da-~~L-----Pf~D~SFD~V 172 (518)
....+.++.++|-.|+|. |..+..+++ .| .++++++.++.. ..++.... ..+ .+..+.+|.|
T Consensus 159 ~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G-~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~v 237 (345)
T cd08260 159 HQARVKPGEWVAVHGCGGVGLSAVMIASALG-ARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVS 237 (345)
T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEE
Confidence 344567889999999764 444444443 56 477777654311 01111111 111 1112268988
Q ss_pred EEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 173 FVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 173 ~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
+.... -...+.++.|.|+++|.++..
T Consensus 238 i~~~g-------~~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 238 VDALG-------IPETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred EEcCC-------CHHHHHHHHHHhhcCCEEEEe
Confidence 87532 124578899999999997764
No 421
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=36.08 E-value=62 Score=33.94 Aligned_cols=90 Identities=18% Similarity=0.232 Sum_probs=54.6
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhc-CCCcEEEEecCC----------------C--C-CcEEeccCCCC--CCCCCceeE
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEI-GVEDSIGIFKKS----------------S--K-PLVISGEGHRI--PFDGNTFDF 171 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~-g~~~v~gID~s~----------------~--~-~l~~~~da~~L--Pf~D~SFD~ 171 (518)
+....++|-||.|-|.....-.+. .+.++.-+|+.. + + ..+.-||+-.+ -.+.+.||+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 344578999999999876443322 133454444431 0 1 11234565433 245789999
Q ss_pred EEEcCceeeccCCh------HHHHHHHHhcccCCcEEEEEe
Q 010086 172 VFVGGARLEKASKP------LDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 172 V~s~~~~l~~~~dp------~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
|+.-.. ...-| ...++-+.+.|||||+++.+-
T Consensus 199 ii~dss---dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 199 IITDSS---DPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEecC---CccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 997542 11112 245688999999999988864
No 422
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=35.94 E-value=49 Score=29.45 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=29.2
Q ss_pred cCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHh
Q 010086 316 FKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEE 363 (518)
Q Consensus 316 ~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~ 363 (518)
++++..++|+|+| .|. +...+ +..+ ++|+++|+++...+.
T Consensus 20 ~~~~~~vLDiGcG-~G~-~~~~l-~~~~-----~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 20 LKPGKRVLDIGCG-TGS-FLRAL-AKRG-----FEVTGVDISPQMIEK 59 (161)
T ss_dssp TTTTSEEEEESST-TSH-HHHHH-HHTT-----SEEEEEESSHHHHHH
T ss_pred cCCCCEEEEEcCC-CCH-HHHHH-HHhC-----CEEEEEECCHHHHhh
Confidence 5678899999999 584 43444 3333 389999999987654
No 423
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=35.84 E-value=1.4e+02 Score=31.30 Aligned_cols=41 Identities=7% Similarity=0.020 Sum_probs=27.1
Q ss_pred HHHcCCCCCCCeEEEEcCCC-CHhHHHHH-hcCCCcEEEEecC
Q 010086 108 LISEGYLSQSAKSLCVETQY-GQDVFALK-EIGVEDSIGIFKK 148 (518)
Q Consensus 108 L~~~gll~~~~rvLDVGcGt-G~~~~~L~-~~g~~~v~gID~s 148 (518)
+...+-++++.+||-.|+|. |..+..++ ..|..+|+.++.+
T Consensus 182 ~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~ 224 (373)
T cd08299 182 AVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDIN 224 (373)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 34455678899999998765 44443333 4574478888754
No 424
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=35.71 E-value=1.1e+02 Score=27.92 Aligned_cols=84 Identities=12% Similarity=0.051 Sum_probs=43.7
Q ss_pred CCCeEEEEcCCCC-HhHHHHHhcCCCcEEEEecCCC----CCcEEeccCCCCCCC-CCceeEEEEcCceeeccCChHHHH
Q 010086 116 QSAKSLCVETQYG-QDVFALKEIGVEDSIGIFKKSS----KPLVISGEGHRIPFD-GNTFDFVFVGGARLEKASKPLDFA 189 (518)
Q Consensus 116 ~~~rvLDVGcGtG-~~~~~L~~~g~~~v~gID~s~~----~~l~~~~da~~LPf~-D~SFD~V~s~~~~l~~~~dp~~~l 189 (518)
+..|+++||-|.= ..+..|++.| .+|+++|+.+. ...++..|..+-... =...|+|+|-. =-++....+
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G-~dV~~tDi~~~~a~~g~~~v~DDif~P~l~iY~~a~lIYSiR----PP~El~~~i 87 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERG-FDVIATDINPRKAPEGVNFVVDDIFNPNLEIYEGADLIYSIR----PPPELQPPI 87 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S----STTEE---SSS--HHHHTTEEEEEEES------TTSHHHH
T ss_pred CCCcEEEECcCCCHHHHHHHHHcC-CcEEEEECcccccccCcceeeecccCCCHHHhcCCcEEEEeC----CChHHhHHH
Confidence 3459999999984 3557888888 79999999875 223455565441110 13578888854 112233455
Q ss_pred HHHHhcccCCcEEEEEe
Q 010086 190 SEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 190 ~Ei~RVLKPGG~lvi~~ 206 (518)
.++.+-+ |.-+++..
T Consensus 88 l~lA~~v--~adlii~p 102 (127)
T PF03686_consen 88 LELAKKV--GADLIIRP 102 (127)
T ss_dssp HHHHHHH--T-EEEEE-
T ss_pred HHHHHHh--CCCEEEEC
Confidence 5555533 44566653
No 425
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=35.65 E-value=42 Score=36.18 Aligned_cols=51 Identities=8% Similarity=0.104 Sum_probs=35.2
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecCCCCCc---EEeccCCCCCCC
Q 010086 114 LSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKKSSKPL---VISGEGHRIPFD 165 (518)
Q Consensus 114 l~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s~~~~l---~~~~da~~LPf~ 165 (518)
+.++++||.|..|..+....|. .+..+|++||+++.... ...+-...|||+
T Consensus 33 i~~~d~vl~ItSaG~N~L~yL~-~~P~~I~aVDlNp~Q~aLleLKlAair~L~y~ 86 (380)
T PF11899_consen 33 IGPDDRVLTITSAGCNALDYLL-AGPKRIHAVDLNPAQNALLELKLAAIRALPYE 86 (380)
T ss_pred CCCCCeEEEEccCCchHHHHHh-cCCceEEEEeCCHHHHHHHHHHHHHHHcCCHH
Confidence 6789999999988666555544 45589999999874321 124556677653
No 426
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=35.65 E-value=1.2e+02 Score=30.86 Aligned_cols=87 Identities=15% Similarity=0.142 Sum_probs=50.7
Q ss_pred HcCCCCCCCeEEEEcC-CC-CHhHHHHHh-cCCCcEEEEecCCCCC-------cEEeccCCC----C-CCCCCceeEEEE
Q 010086 110 SEGYLSQSAKSLCVET-QY-GQDVFALKE-IGVEDSIGIFKKSSKP-------LVISGEGHR----I-PFDGNTFDFVFV 174 (518)
Q Consensus 110 ~~gll~~~~rvLDVGc-Gt-G~~~~~L~~-~g~~~v~gID~s~~~~-------l~~~~da~~----L-Pf~D~SFD~V~s 174 (518)
....+.++.++|-.|+ |. |..+..+++ .| .++++++.+.... ..+...... . -..+..+|+|+.
T Consensus 171 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g-~~vi~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 249 (350)
T cd08274 171 ERAGVGAGETVLVTGASGGVGSALVQLAKRRG-AIVIAVAGAAKEEAVRALGADTVILRDAPLLADAKALGGEPVDVVAD 249 (350)
T ss_pred hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcC-CEEEEEeCchhhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEEe
Confidence 3455788999999998 33 555544444 56 5677776432100 011100000 0 113456899987
Q ss_pred cCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 175 GGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 175 ~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
... ...+.++.|.|+++|.++..
T Consensus 250 ~~g--------~~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 250 VVG--------GPLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred cCC--------HHHHHHHHHHhccCCEEEEe
Confidence 542 13578899999999998753
No 427
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=35.44 E-value=40 Score=33.13 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=32.3
Q ss_pred cCCceEEEEeCCCC-CCcchhhhhhhhCCCCCcceEEEEEcCCccchHh----hc--cCCceEEEee
Q 010086 316 FKNRYVYVDVGARS-YGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEE----YK--VKKKVKLLPY 375 (518)
Q Consensus 316 ~~~r~V~iD~GAn~-~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~----~~--~~~~V~~~~~ 375 (518)
++|+.-++|+|+++ |.+.+.+.+. ++...|+++|.+|.+.+. +. ...||+++..
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lv------g~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~g 130 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLV------GPVGRVVSVERDPELAERARRNLARLGIDNVEVVVG 130 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHH------STTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhc------CccceEEEECccHHHHHHHHHHHHHhccCceeEEEc
Confidence 67899999999985 2222222222 123479999999998653 33 3457877763
No 428
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=35.24 E-value=54 Score=33.96 Aligned_cols=55 Identities=25% Similarity=0.301 Sum_probs=41.5
Q ss_pred chhhhhHHHHHhcCCcccccEEEEEeecccccccCCCCCCCcccccHHHHHHHHHHHhh
Q 010086 451 GTEFDLIPRLFETGAICLIDEIFLECHYNRWQRCCPGQRSPKYKKTYEQCLELFTSLRQ 509 (518)
Q Consensus 451 GaE~~vL~~l~~~g~i~~IDeLfvE~H~~~~~~~~~g~~~~~~~~~~~~cl~L~~~LR~ 509 (518)
|...++++.|.+..+-.-+|=||+|+|..--.-+|+|. .+-+.++-.+|++.|+.
T Consensus 216 ~G~Re~V~~larAAvA~GaDGlfiEvHpdP~~AlsDg~----q~l~~~~l~~ll~~l~~ 270 (290)
T PLN03033 216 GGLRELIPCIARTAVAVGVDGIFMEVHDDPLSAPVDGP----TQWPLRHLEELLEELIA 270 (290)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEecCCccccCCCcc----cCcCHHHHHHHHHHHHH
Confidence 46788899998888888899999999987544444454 36677777778877764
No 429
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=35.23 E-value=77 Score=34.41 Aligned_cols=49 Identities=10% Similarity=-0.121 Sum_probs=33.8
Q ss_pred HHhhHHHHHHHHHHcCCCCCCCeEEEEcCCCCHhHHHHHhcCCCcEEEEecC
Q 010086 97 AVNFYSSVFQDLISEGYLSQSAKSLCVETQYGQDVFALKEIGVEDSIGIFKK 148 (518)
Q Consensus 97 ~v~~~~~l~~~L~~~gll~~~~rvLDVGcGtG~~~~~L~~~g~~~v~gID~s 148 (518)
.++.+.+++..+.+- .+-..++|+|.|.|.++..|.-.....|.|||-+
T Consensus 137 Ei~~lselvSsi~~f---~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegs 185 (476)
T KOG2651|consen 137 EIRRLSELVSSISDF---TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGS 185 (476)
T ss_pred HHHHHHHHHHHHHhh---cCCCeeEEcCCCchHHHHHHhhccCceEEEeccc
Confidence 445555555555442 2346899999999999987763222689999976
No 430
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=34.99 E-value=1.6e+02 Score=30.70 Aligned_cols=63 Identities=14% Similarity=0.044 Sum_probs=28.2
Q ss_pred CCeEEEEcCCCCHhHHHH--HhcCCCcEEEEecCC------------CCC-----cEE-eccCCC----CCCCCCceeEE
Q 010086 117 SAKSLCVETQYGQDVFAL--KEIGVEDSIGIFKKS------------SKP-----LVI-SGEGHR----IPFDGNTFDFV 172 (518)
Q Consensus 117 ~~rvLDVGcGtG~~~~~L--~~~g~~~v~gID~s~------------~~~-----l~~-~~da~~----LPf~D~SFD~V 172 (518)
.-++||||||....-..| +..| -+.+|.|+++ .+. .++ +.+... +--+++.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~-W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYG-WSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcC-CeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 568999999987654333 2345 4899999863 111 122 222222 22345789999
Q ss_pred EEcCceeec
Q 010086 173 FVGGARLEK 181 (518)
Q Consensus 173 ~s~~~~l~~ 181 (518)
.|+-= |+.
T Consensus 182 mCNPP-Fy~ 189 (299)
T PF05971_consen 182 MCNPP-FYS 189 (299)
T ss_dssp EE------S
T ss_pred ecCCc-ccc
Confidence 99764 543
No 431
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=34.33 E-value=43 Score=26.72 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=22.4
Q ss_pred EEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHh
Q 010086 323 VDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEE 363 (518)
Q Consensus 323 iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~ 363 (518)
+|+|++ .|... ..+.+. | ..+|+++|+++...+.
T Consensus 1 LdiG~G-~G~~~-~~l~~~-~----~~~v~~~D~~~~~~~~ 34 (95)
T PF08241_consen 1 LDIGCG-TGRFA-AALAKR-G----GASVTGIDISEEMLEQ 34 (95)
T ss_dssp EEET-T-TSHHH-HHHHHT-T----TCEEEEEES-HHHHHH
T ss_pred CEecCc-CCHHH-HHHHhc-c----CCEEEEEeCCHHHHHH
Confidence 699998 47544 566655 3 2389999999986543
No 432
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=34.29 E-value=58 Score=33.65 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=40.5
Q ss_pred chhhhhHHHHHhcCCcccccEEEEEeecccccccCCCCCCCcccccHHHHHHHHHHHhh
Q 010086 451 GTEFDLIPRLFETGAICLIDEIFLECHYNRWQRCCPGQRSPKYKKTYEQCLELFTSLRQ 509 (518)
Q Consensus 451 GaE~~vL~~l~~~g~i~~IDeLfvE~H~~~~~~~~~g~~~~~~~~~~~~cl~L~~~LR~ 509 (518)
|...++++.|.+..+..-+|=||+|+|..-=.-+|+|. ..-+.++-.+|+..|+.
T Consensus 213 ~G~re~v~~larAAvA~GaDGl~iEvHpdP~~AlsDg~----q~l~~~~~~~l~~~l~~ 267 (281)
T PRK12457 213 GGRRRQVLDLARAGMAVGLAGLFLEAHPDPDRARCDGP----SALPLDQLEPFLSQVKA 267 (281)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEecCCccccCCCcc----cccCHHHHHHHHHHHHH
Confidence 55788899998888888899999999987533444454 35566666667777654
No 433
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=33.86 E-value=72 Score=33.54 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=14.2
Q ss_pred CeEEEEcCCCCHhHHHHH
Q 010086 118 AKSLCVETQYGQDVFALK 135 (518)
Q Consensus 118 ~rvLDVGcGtG~~~~~L~ 135 (518)
.+|||||.|.|....+|+
T Consensus 88 ~~VlCIGGGAGAElVAlA 105 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALA 105 (315)
T ss_pred ceEEEECCChHHHHHHHH
Confidence 699999999987654443
No 434
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=33.78 E-value=30 Score=35.16 Aligned_cols=47 Identities=19% Similarity=0.143 Sum_probs=36.2
Q ss_pred EEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhccCCceEEEee
Q 010086 321 VYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYKVKKKVKLLPY 375 (518)
Q Consensus 321 V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~~~~~V~~~~~ 375 (518)
+.+|+|+|. |. +..-.+.|++ +|.|.++++...+.-.++++++....
T Consensus 36 ~a~DvG~G~-Gq--a~~~iae~~k-----~VIatD~s~~mL~~a~k~~~~~y~~t 82 (261)
T KOG3010|consen 36 LAWDVGTGN-GQ--AARGIAEHYK-----EVIATDVSEAMLKVAKKHPPVTYCHT 82 (261)
T ss_pred eEEEeccCC-Cc--chHHHHHhhh-----hheeecCCHHHHHHhhcCCCcccccC
Confidence 999999995 75 2455556665 79999999988777777888876654
No 435
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=33.58 E-value=62 Score=32.56 Aligned_cols=77 Identities=26% Similarity=0.312 Sum_probs=47.9
Q ss_pred cCcccccCCCC----hhhhhhhhhcccccCCcccccccCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCc
Q 010086 283 AEPLIMEEPLK----PWITMKRNIKNIKYLPSMADISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADK 358 (518)
Q Consensus 283 ~Epli~E~~~~----~~~~~~~~~~~~~ylp~~~d~s~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np 358 (518)
.|+=++..-.| .|.+..++.-. .-++++.++ ++.+|-+ .| |.+=|.+.+|.+ +=+.+|++|
T Consensus 70 ~~D~ll~~~~k~VMm~WEtpiMha~A-------~ai~tkggr-vLnVGFG-Mg--IidT~iQe~~p~----~H~IiE~hp 134 (271)
T KOG1709|consen 70 AEDTLLDSLGKGVMMRWETPIMHALA-------EAISTKGGR-VLNVGFG-MG--IIDTFIQEAPPD----EHWIIEAHP 134 (271)
T ss_pred hhhHHHhhccchhhhhhhhHHHHHHH-------HHHhhCCce-EEEeccc-hH--HHHHHHhhcCCc----ceEEEecCH
Confidence 55554433333 56665554321 124555444 5788866 35 557788888876 568999999
Q ss_pred cchHhhc-----cCCceEEEe
Q 010086 359 TFHEEYK-----VKKKVKLLP 374 (518)
Q Consensus 359 ~~~~~~~-----~~~~V~~~~ 374 (518)
...++.+ .+.||.++.
T Consensus 135 ~V~krmr~~gw~ek~nViil~ 155 (271)
T KOG1709|consen 135 DVLKRMRDWGWREKENVIILE 155 (271)
T ss_pred HHHHHHHhcccccccceEEEe
Confidence 9988765 456665543
No 436
>PRK00811 spermidine synthase; Provisional
Probab=33.01 E-value=1.3e+02 Score=30.84 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=26.5
Q ss_pred CceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchH
Q 010086 318 NRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 318 ~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~ 362 (518)
+++ ++|+|++ .|. ++.++.+..+.. +|.++|.||...+
T Consensus 77 p~~-VL~iG~G-~G~-~~~~~l~~~~~~----~V~~VEid~~vv~ 114 (283)
T PRK00811 77 PKR-VLIIGGG-DGG-TLREVLKHPSVE----KITLVEIDERVVE 114 (283)
T ss_pred CCE-EEEEecC-chH-HHHHHHcCCCCC----EEEEEeCCHHHHH
Confidence 444 5899998 475 446776644433 7999999998643
No 437
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=32.92 E-value=3.1e+02 Score=27.74 Aligned_cols=89 Identities=17% Similarity=0.153 Sum_probs=49.7
Q ss_pred HcCCCCCCCeEEEEcCCC-CHhHHHHH-hcCCCcEEEEecCCC--------C-CcEEeccCC----C-----CCCCCCce
Q 010086 110 SEGYLSQSAKSLCVETQY-GQDVFALK-EIGVEDSIGIFKKSS--------K-PLVISGEGH----R-----IPFDGNTF 169 (518)
Q Consensus 110 ~~gll~~~~rvLDVGcGt-G~~~~~L~-~~g~~~v~gID~s~~--------~-~l~~~~da~----~-----LPf~D~SF 169 (518)
...-++++.+||-.|+|. |..+..++ ..|...++.++.++. . ..++..+.. . ...+.+.+
T Consensus 155 ~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 234 (341)
T cd08262 155 RRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAMGADIVVDPAADSPFAAWAAELARAGGPKP 234 (341)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEEcCCCcCHHHHHHHHHHHhCCCCC
Confidence 345578899999998653 33333333 357545777764321 0 011111100 0 01233458
Q ss_pred eEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 170 DFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 170 D~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
|+|+.... . ...+.++.+.|+++|.++..
T Consensus 235 d~vid~~g------~-~~~~~~~~~~l~~~g~~v~~ 263 (341)
T cd08262 235 AVIFECVG------A-PGLIQQIIEGAPPGGRIVVV 263 (341)
T ss_pred CEEEECCC------C-HHHHHHHHHHhccCCEEEEE
Confidence 88886432 1 13578899999999998765
No 438
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=32.63 E-value=33 Score=28.35 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=24.1
Q ss_pred HHHHHHHHHcCCCCCCCeEEEEcCCCCHh
Q 010086 102 SSVFQDLISEGYLSQSAKSLCVETQYGQD 130 (518)
Q Consensus 102 ~~l~~~L~~~gll~~~~rvLDVGcGtG~~ 130 (518)
.-.+.++.+.+.+++|+++|.+|.|.|..
T Consensus 54 ~~~L~~~~~~g~~~~Gd~vl~~~~G~G~~ 82 (90)
T PF08541_consen 54 PINLADALEEGRIKPGDRVLLVGFGAGFS 82 (90)
T ss_dssp HHHHHHHHHTTSSCTTEEEEEEEEETTTE
T ss_pred HHHHHHHHHcCCCCCCCEEEEEEEEhhhe
Confidence 45566778889999999999999998853
No 439
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=32.53 E-value=65 Score=31.63 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=35.5
Q ss_pred CceEEEEeCCCCCCc-chhhhhhhhCCCCCcceEEEEEcCCccchHhhcc-----CCceEEEeeceeecCC
Q 010086 318 NRYVYVDVGARSYGS-SIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYKV-----KKKVKLLPYAAWVRNE 382 (518)
Q Consensus 318 ~r~V~iD~GAn~~g~-sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~~-----~~~V~~~~~Av~~~~~ 382 (518)
.++.++|+|++. |. +++..... |+ +|+++|+||...+-.+. ..+|.++-.-+..-++
T Consensus 45 ~g~~V~DlG~GT-G~La~ga~~lG--a~-----~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~ 107 (198)
T COG2263 45 EGKTVLDLGAGT-GILAIGAALLG--AS-----RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRG 107 (198)
T ss_pred CCCEEEEcCCCc-CHHHHHHHhcC--Cc-----EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCC
Confidence 477899999984 64 33333321 22 89999999997665432 2357666655444333
No 440
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=32.52 E-value=5.1e+02 Score=26.34 Aligned_cols=84 Identities=14% Similarity=0.159 Sum_probs=48.4
Q ss_pred CCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCCC-CCCCCceeEEEEcCceeec
Q 010086 114 LSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHRI-PFDGNTFDFVFVGGARLEK 181 (518)
Q Consensus 114 l~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~L-Pf~D~SFD~V~s~~~~l~~ 181 (518)
++++.++|-.|+|. |..+..+++ .| .+++.++.++.. ..++....... .-.++.+|+|+.... -
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G-~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g-~-- 242 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALG-AEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVS-A-- 242 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCC-C--
Confidence 67888898888765 554444443 56 478888765311 01111100000 001456888887542 1
Q ss_pred cCChHHHHHHHHhcccCCcEEEEE
Q 010086 182 ASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 182 ~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
+ ..+.++.+.|+++|.++..
T Consensus 243 ---~-~~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 243 ---S-HDLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred ---c-chHHHHHHHhcCCCEEEEE
Confidence 1 2478889999999988765
No 441
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=31.56 E-value=2.2e+02 Score=28.11 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=50.9
Q ss_pred HHcCCCCCCCeEEEEcCC--CCHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCC----C-CCCCCceeE
Q 010086 109 ISEGYLSQSAKSLCVETQ--YGQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHR----I-PFDGNTFDF 171 (518)
Q Consensus 109 ~~~gll~~~~rvLDVGcG--tG~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~----L-Pf~D~SFD~ 171 (518)
...+.++++.+||-.|+. .|..+..+++ .| .+++.+..++.. ..++. +... + .+ ...+|+
T Consensus 135 ~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~i~~~-~~~~d~ 211 (320)
T cd08243 135 FRSLGLQPGDTLLIRGGTSSVGLAALKLAKALG-ATVTATTRSPERAALLKELGADEVVI-DDGAIAEQLRAA-PGGFDK 211 (320)
T ss_pred HHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhcCCcEEEe-cCccHHHHHHHh-CCCceE
Confidence 334456788999999973 3555555544 56 568777654310 01111 1100 0 12 356898
Q ss_pred EEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 172 VFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 172 V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
|+.... ...+.++.+.|+++|.++..
T Consensus 212 vl~~~~--------~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 212 VLELVG--------TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred EEECCC--------hHHHHHHHHHhccCCEEEEE
Confidence 887542 13578889999999997654
No 442
>PF09857 DUF2084: Uncharacterized protein conserved in bacteria (DUF2084); InterPro: IPR018654 This domain is found in various hypothetical bacterial proteins that have no known function.
Probab=31.54 E-value=91 Score=26.47 Aligned_cols=53 Identities=23% Similarity=0.389 Sum_probs=40.3
Q ss_pred eeccchhhhhHHHHHhcCCccccc-----EEEEEeecccccccCCCCCCCcccccHHHH-HHHHHHHhhCCe
Q 010086 447 MDVEGTEFDLIPRLFETGAICLID-----EIFLECHYNRWQRCCPGQRSPKYKKTYEQC-LELFTSLRQNGV 512 (518)
Q Consensus 447 MDIEGaE~~vL~~l~~~g~i~~ID-----eLfvE~H~~~~~~~~~g~~~~~~~~~~~~c-l~L~~~LR~~Gv 512 (518)
|||.-+|--+|.-|.+-|.|.++. -..+||-.+. |- -+.+| |++|.+|+.++.
T Consensus 1 MnISk~EQR~LHvLAqGG~I~~~rd~~gri~~v~C~TRe------G~-------~l~dctl~vF~kLK~krl 59 (85)
T PF09857_consen 1 MNISKQEQRVLHVLAQGGRIRHERDDSGRITAVECYTRE------GW-------LLSDCTLAVFRKLKRKRL 59 (85)
T ss_pred CCccHHHHHHHHHHhcCCeEEEEECCCCCEEEEEEEccC------Ce-------eeCCCCHHHHHHHhhccc
Confidence 899999999999999999997664 4788998653 11 11233 679999998764
No 443
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=31.42 E-value=1e+02 Score=31.33 Aligned_cols=86 Identities=10% Similarity=0.034 Sum_probs=47.8
Q ss_pred CCCCCCeEEEEcCCC-CHhHHHHH-hcCCCcEEEEecCCCC-------C-cEEeccCCCC------CCCCCceeEEEEcC
Q 010086 113 YLSQSAKSLCVETQY-GQDVFALK-EIGVEDSIGIFKKSSK-------P-LVISGEGHRI------PFDGNTFDFVFVGG 176 (518)
Q Consensus 113 ll~~~~rvLDVGcGt-G~~~~~L~-~~g~~~v~gID~s~~~-------~-l~~~~da~~L------Pf~D~SFD~V~s~~ 176 (518)
-+.++.+||-.|+|. |..+..++ ..|...+++++.++.. . ..+..+.... -.+...+|+|+...
T Consensus 164 ~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~dvvid~~ 243 (344)
T cd08284 164 QVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAEPINFEDAEPVERVREATEGRGADVVLEAV 243 (344)
T ss_pred CCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCeEEecCCcCHHHHHHHHhCCCCCCEEEECC
Confidence 456788998888654 44443333 3564478888643210 0 1111111100 01234588888653
Q ss_pred ceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 177 ARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
. . ...+.++.+.|+++|.++..
T Consensus 244 ~------~-~~~~~~~~~~l~~~g~~v~~ 265 (344)
T cd08284 244 G------G-AAALDLAFDLVRPGGVISSV 265 (344)
T ss_pred C------C-HHHHHHHHHhcccCCEEEEE
Confidence 2 1 23578999999999987654
No 444
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=31.09 E-value=43 Score=35.73 Aligned_cols=88 Identities=13% Similarity=0.071 Sum_probs=48.5
Q ss_pred CCCeEEEEcCCC-CHhH-HHHHhcCCCcEEEEecCCCC--------CcEEec---cCCCCCCCCCceeEEEEcCceeecc
Q 010086 116 QSAKSLCVETQY-GQDV-FALKEIGVEDSIGIFKKSSK--------PLVISG---EGHRIPFDGNTFDFVFVGGARLEKA 182 (518)
Q Consensus 116 ~~~rvLDVGcGt-G~~~-~~L~~~g~~~v~gID~s~~~--------~l~~~~---da~~LPf~D~SFD~V~s~~~~l~~~ 182 (518)
++.+|+-+|+|. |..+ ..++..| .+|+.+|.++.. ...+.. +.+.+.-.=..+|+|++.-. ....
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG-a~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~-~~g~ 243 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG-ATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVL-IPGA 243 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccc-cCCC
Confidence 356799999996 5554 4455577 479999975311 000000 00111000135799998642 2111
Q ss_pred CChHHHHHHHHhcccCCcEEEEE
Q 010086 183 SKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 183 ~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
..|.-.-+|+.+.+|||++++-.
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEE
Confidence 22432347778889999886654
No 445
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=30.79 E-value=3.1e+02 Score=28.03 Aligned_cols=88 Identities=10% Similarity=0.049 Sum_probs=48.8
Q ss_pred cCCCCCCCeEEEEcCCC-CHhHHHHH-hcCCCcEEEEecCCCC---------CcEEeccCCC----C-CC-CCCceeEEE
Q 010086 111 EGYLSQSAKSLCVETQY-GQDVFALK-EIGVEDSIGIFKKSSK---------PLVISGEGHR----I-PF-DGNTFDFVF 173 (518)
Q Consensus 111 ~gll~~~~rvLDVGcGt-G~~~~~L~-~~g~~~v~gID~s~~~---------~l~~~~da~~----L-Pf-~D~SFD~V~ 173 (518)
...+.++.+||-.|+|. |..+..++ ..|...+++++.++.. ..++...... + -. +...+|+|+
T Consensus 169 ~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vdvvl 248 (350)
T cd08256 169 RANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVVLNPPEVDVVEKIKELTGGYGCDIYI 248 (350)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCCCEEE
Confidence 34567888888877654 44443343 3675567788754310 0011111000 0 01 123488888
Q ss_pred EcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 174 VGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 174 s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
.... . ...+.++.+.|+++|.++..
T Consensus 249 d~~g------~-~~~~~~~~~~l~~~G~~v~~ 273 (350)
T cd08256 249 EATG------H-PSAVEQGLNMIRKLGRFVEF 273 (350)
T ss_pred ECCC------C-hHHHHHHHHHhhcCCEEEEE
Confidence 7532 1 23578899999999987764
No 446
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=30.12 E-value=62 Score=32.15 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=27.6
Q ss_pred CceEEEEeCCCCCCcchhhhhhhh--CCCCCcceEEEEEcCCccchH
Q 010086 318 NRYVYVDVGARSYGSSIGSWFKKQ--YPKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 318 ~r~V~iD~GAn~~g~sv~~~F~~~--YP~~~~~f~V~afE~np~~~~ 362 (518)
++.-++|+|++ -|. .+..+.+. +|. .+|+++|++|...+
T Consensus 56 ~~~~vLDlGcG-tG~-~~~~l~~~~~~~~----~~v~gvD~S~~ml~ 96 (247)
T PRK15451 56 PGTQVYDLGCS-LGA-ATLSVRRNIHHDN----CKIIAIDNSPAMIE 96 (247)
T ss_pred CCCEEEEEccc-CCH-HHHHHHHhcCCCC----CeEEEEeCCHHHHH
Confidence 45668999998 475 33456553 453 48999999998654
No 447
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=30.09 E-value=76 Score=32.45 Aligned_cols=55 Identities=20% Similarity=0.243 Sum_probs=41.9
Q ss_pred chhhhhHHHHHhcCCcccccEEEEEeecccccccCCCCCCCcccccHHHHHHHHHHHhh
Q 010086 451 GTEFDLIPRLFETGAICLIDEIFLECHYNRWQRCCPGQRSPKYKKTYEQCLELFTSLRQ 509 (518)
Q Consensus 451 GaE~~vL~~l~~~g~i~~IDeLfvE~H~~~~~~~~~g~~~~~~~~~~~~cl~L~~~LR~ 509 (518)
|...++++.|.+.....-+|=||+|+|..==.-+|+|. .+-+.++-.+|++.|+.
T Consensus 197 ~G~r~~v~~la~AAvA~GaDGl~iEvHpdP~~AlsDg~----q~l~~~~~~~ll~~l~~ 251 (258)
T TIGR01362 197 GGLREFVPTLARAAVAVGIDGLFMETHPDPKNAKSDGP----NMLPLSELEGLLEKLLA 251 (258)
T ss_pred CCcHHHHHHHHHHHHHhCCCEEEEEeCCCccccCCCcc----ccCCHHHHHHHHHHHHH
Confidence 55788899998887778899999999987533344454 36777787788888875
No 448
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=29.86 E-value=96 Score=32.39 Aligned_cols=51 Identities=22% Similarity=0.215 Sum_probs=32.9
Q ss_pred CceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHh------hc-cCCceEEEee
Q 010086 318 NRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEE------YK-VKKKVKLLPY 375 (518)
Q Consensus 318 ~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~------~~-~~~~V~~~~~ 375 (518)
++..++|+|+|. |. .+..+.+..|. .|+++|+++.+... +. ..++|++++.
T Consensus 122 ~g~~VLDIGCG~-G~-~~~~la~~g~~-----~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~ 179 (322)
T PRK15068 122 KGRTVLDVGCGN-GY-HMWRMLGAGAK-----LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPL 179 (322)
T ss_pred CCCEEEEeccCC-cH-HHHHHHHcCCC-----EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeC
Confidence 356789999994 74 43455555553 59999999975432 21 2356777664
No 449
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=29.63 E-value=2e+02 Score=29.97 Aligned_cols=95 Identities=9% Similarity=0.019 Sum_probs=52.7
Q ss_pred cCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC--------CcEEeccCCC----C-CCCCCceeEEEEc
Q 010086 111 EGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK--------PLVISGEGHR----I-PFDGNTFDFVFVG 175 (518)
Q Consensus 111 ~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~--------~l~~~~da~~----L-Pf~D~SFD~V~s~ 175 (518)
...+.++.+||-.|+|. |..+..+++ .|...++++|.++.. ...+...... + .+.+..+|+|+..
T Consensus 171 ~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~i~~~~~~~~d~v~d~ 250 (375)
T cd08282 171 LAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAIPIDFSDGDPVEQILGLEPGGVDRAVDC 250 (375)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCeEeccCcccHHHHHHHhhCCCCCEEEEC
Confidence 34467889999888875 555544443 564478888754210 0011000000 0 1122458998875
Q ss_pred Cc--eeec-c-CChHHHHHHHHhcccCCcEEEEE
Q 010086 176 GA--RLEK-A-SKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 176 ~~--~l~~-~-~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
.. .+++ . .++...+.++.++|+++|.++..
T Consensus 251 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 284 (375)
T cd08282 251 VGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIV 284 (375)
T ss_pred CCCcccccccccchHHHHHHHHHHhhcCcEEEEE
Confidence 42 0111 0 13445689999999999998553
No 450
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=29.57 E-value=2.4e+02 Score=28.67 Aligned_cols=85 Identities=8% Similarity=-0.002 Sum_probs=48.6
Q ss_pred CCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCC----C-C-CCCCceeEEEEcC
Q 010086 114 LSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHR----I-P-FDGNTFDFVFVGG 176 (518)
Q Consensus 114 l~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~----L-P-f~D~SFD~V~s~~ 176 (518)
..++.+||-.|+|. |..+..+++ .|...++.++.++.. ..++.....+ + . -++..+|.|+...
T Consensus 161 ~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 240 (341)
T PRK05396 161 DLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEMS 240 (341)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHhcCCCCCCEEEECC
Confidence 35788888877764 455444443 564467777644210 0111111111 0 1 1345689888743
Q ss_pred ceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 177 ARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 177 ~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
. ....+.++.+.|+|+|.++..
T Consensus 241 g-------~~~~~~~~~~~l~~~G~~v~~ 262 (341)
T PRK05396 241 G-------APSAFRQMLDNMNHGGRIAML 262 (341)
T ss_pred C-------CHHHHHHHHHHHhcCCEEEEE
Confidence 2 134678899999999998776
No 451
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=29.43 E-value=78 Score=32.47 Aligned_cols=55 Identities=16% Similarity=0.267 Sum_probs=41.4
Q ss_pred chhhhhHHHHHhcCCcccccEEEEEeecccccccCCCCCCCcccccHHHHHHHHHHHhh
Q 010086 451 GTEFDLIPRLFETGAICLIDEIFLECHYNRWQRCCPGQRSPKYKKTYEQCLELFTSLRQ 509 (518)
Q Consensus 451 GaE~~vL~~l~~~g~i~~IDeLfvE~H~~~~~~~~~g~~~~~~~~~~~~cl~L~~~LR~ 509 (518)
|...++++.|.+..+..-+|=||+|+|..==.-+|+|. .+-+.++-.+|++.|+.
T Consensus 205 ~G~r~~v~~la~AAvA~GadGl~iEvHpdP~~AlsDg~----q~l~~~~~~~ll~~l~~ 259 (264)
T PRK05198 205 GGQREFVPVLARAAVAVGVAGLFIETHPDPDNALSDGP----NMLPLDKLEPLLEQLKA 259 (264)
T ss_pred CCcHHHHHHHHHHHHHcCCCEEEEEeCCCccccCCCcc----ccCCHHHHHHHHHHHHH
Confidence 44677888888887888899999999987533344454 36777888889888875
No 452
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=29.29 E-value=1.2e+02 Score=30.91 Aligned_cols=51 Identities=20% Similarity=0.327 Sum_probs=37.6
Q ss_pred CceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCc-cchHhhccCCceEEEee
Q 010086 318 NRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADK-TFHEEYKVKKKVKLLPY 375 (518)
Q Consensus 318 ~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np-~~~~~~~~~~~V~~~~~ 375 (518)
++++++|+||- -|. .++...+. ..-.|||+|.-- +++.+++..|+|+.+..
T Consensus 79 k~kv~LDiGsS-TGG-FTd~lLq~-----gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~ 130 (245)
T COG1189 79 KGKVVLDIGSS-TGG-FTDVLLQR-----GAKHVYAVDVGYGQLHWKLRNDPRVIVLER 130 (245)
T ss_pred CCCEEEEecCC-Ccc-HHHHHHHc-----CCcEEEEEEccCCccCHhHhcCCcEEEEec
Confidence 58999999996 453 55566542 223899999876 57778888888887764
No 453
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=29.27 E-value=56 Score=30.53 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=26.2
Q ss_pred ceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchH
Q 010086 319 RYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 319 r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~ 362 (518)
...++|+|+|. |. ++..+.+..+ +|+++|.+|...+
T Consensus 20 ~~~vLdlG~G~-G~-~~~~l~~~~~------~v~~vD~s~~~~~ 55 (179)
T TIGR00537 20 PDDVLEIGAGT-GL-VAIRLKGKGK------CILTTDINPFAVK 55 (179)
T ss_pred CCeEEEeCCCh-hH-HHHHHHhcCC------EEEEEECCHHHHH
Confidence 45699999994 74 4455655443 7999999998754
No 454
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=28.83 E-value=2.1e+02 Score=29.06 Aligned_cols=86 Identities=12% Similarity=0.134 Sum_probs=49.5
Q ss_pred CCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEecc-------CCCCCCCCCceeEEE
Q 010086 112 GYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGE-------GHRIPFDGNTFDFVF 173 (518)
Q Consensus 112 gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~d-------a~~LPf~D~SFD~V~ 173 (518)
.-++++..+|-.|+|. |..+..+++ .|...+++++.++.. ..++... ...+. ++..+|.++
T Consensus 164 ~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~i~~~~-~~~~~d~il 242 (345)
T cd08287 164 AGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIVAERGEEAVARVRELT-GGVGADAVL 242 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceEecCCcccHHHHHHHhc-CCCCCCEEE
Confidence 3467788888888765 555444444 565458888754310 0111111 01111 233578887
Q ss_pred EcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 174 VGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 174 s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
.... ....+.++.+.|+++|.++..
T Consensus 243 ~~~g-------~~~~~~~~~~~l~~~g~~v~~ 267 (345)
T cd08287 243 ECVG-------TQESMEQAIAIARPGGRVGYV 267 (345)
T ss_pred ECCC-------CHHHHHHHHHhhccCCEEEEe
Confidence 6532 134688999999999998764
No 455
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=28.10 E-value=2.8e+02 Score=29.56 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=23.6
Q ss_pred eEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchH
Q 010086 320 YVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 320 ~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~ 362 (518)
..++|+|+| .|. ++-.+.. +. ..|+++|.||...+
T Consensus 235 ~~vLDL~cG-~G~-~~l~la~--~~----~~v~~vE~~~~av~ 269 (374)
T TIGR02085 235 TQMWDLFCG-VGG-FGLHCAG--PD----TQLTGIEIESEAIA 269 (374)
T ss_pred CEEEEccCC-ccH-HHHHHhh--cC----CeEEEEECCHHHHH
Confidence 468999999 474 5333331 21 27999999998643
No 456
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=28.09 E-value=97 Score=32.86 Aligned_cols=93 Identities=15% Similarity=0.078 Sum_probs=58.9
Q ss_pred CCeEEEEcCCC-CHhHHHHHhcCCCcEEEEecCCC-----------CCcEEeccCCCCCCCCCceeEEEEcCceeeccCC
Q 010086 117 SAKSLCVETQY-GQDVFALKEIGVEDSIGIFKKSS-----------KPLVISGEGHRIPFDGNTFDFVFVGGARLEKASK 184 (518)
Q Consensus 117 ~~rvLDVGcGt-G~~~~~L~~~g~~~v~gID~s~~-----------~~l~~~~da~~LPf~D~SFD~V~s~~~~l~~~~d 184 (518)
.++|.-+|.|. |..+..++-...++|+-+|++.. .......+..++--.=...|+|+..-- ..-...
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVL-Ipgaka 246 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVL-IPGAKA 246 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEE-ecCCCC
Confidence 46889999998 77665555422379999999831 111223333333222346777776432 444567
Q ss_pred hHHHHHHHHhcccCCcEEEE-EecCCC
Q 010086 185 PLDFASEIVRTLKPEGFAVV-HVRAKD 210 (518)
Q Consensus 185 p~~~l~Ei~RVLKPGG~lvi-~~~~~~ 210 (518)
|.-+.+|+..-+|||.+++= .+.++.
T Consensus 247 PkLvt~e~vk~MkpGsVivDVAiDqGG 273 (371)
T COG0686 247 PKLVTREMVKQMKPGSVIVDVAIDQGG 273 (371)
T ss_pred ceehhHHHHHhcCCCcEEEEEEEcCCC
Confidence 88889999999999998653 354443
No 457
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=28.06 E-value=85 Score=29.75 Aligned_cols=49 Identities=16% Similarity=0.199 Sum_probs=31.5
Q ss_pred CceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhccCCceEEEe
Q 010086 318 NRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYKVKKKVKLLP 374 (518)
Q Consensus 318 ~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~~~~~V~~~~ 374 (518)
+...++|+|++ .|. ++..+.+.+.. .++++|+++...+.... .+++++.
T Consensus 13 ~~~~iLDiGcG-~G~-~~~~l~~~~~~-----~~~giD~s~~~i~~a~~-~~~~~~~ 61 (194)
T TIGR02081 13 PGSRVLDLGCG-DGE-LLALLRDEKQV-----RGYGIEIDQDGVLACVA-RGVNVIQ 61 (194)
T ss_pred CCCEEEEeCCC-CCH-HHHHHHhccCC-----cEEEEeCCHHHHHHHHH-cCCeEEE
Confidence 45679999999 485 43556554433 57999999876544322 3455444
No 458
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=28.03 E-value=1.2e+02 Score=29.16 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=27.7
Q ss_pred cCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchH
Q 010086 316 FKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 316 ~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~ 362 (518)
.+++.-++|+|++. |. .+.++.+... +|+++|.++...+
T Consensus 76 ~~~~~~VLeiG~Gs-G~-~t~~la~~~~------~v~~vd~~~~~~~ 114 (212)
T PRK00312 76 LKPGDRVLEIGTGS-GY-QAAVLAHLVR------RVFSVERIKTLQW 114 (212)
T ss_pred CCCCCEEEEECCCc-cH-HHHHHHHHhC------EEEEEeCCHHHHH
Confidence 35667789999994 75 4345555432 6999999998754
No 459
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=27.93 E-value=1.1e+02 Score=32.19 Aligned_cols=55 Identities=11% Similarity=0.138 Sum_probs=36.5
Q ss_pred cCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHh----hc--cCCceEEEee
Q 010086 316 FKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEE----YK--VKKKVKLLPY 375 (518)
Q Consensus 316 ~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~----~~--~~~~V~~~~~ 375 (518)
.+++..++|+|++. |. ++.++.+.++... .|+++|.+|...+. .. +..+|+++..
T Consensus 78 i~~g~~VLDIG~Gt-G~-~a~~LA~~~~~~g---~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~g 138 (322)
T PRK13943 78 LDKGMRVLEIGGGT-GY-NAAVMSRVVGEKG---LVVSVEYSRKICEIAKRNVRRLGIENVIFVCG 138 (322)
T ss_pred CCCCCEEEEEeCCc-cH-HHHHHHHhcCCCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 35677899999984 75 5567777776321 59999999986431 22 2356776643
No 460
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=27.69 E-value=2.8e+02 Score=28.23 Aligned_cols=92 Identities=16% Similarity=0.117 Sum_probs=42.2
Q ss_pred CCCeEEEEcCCCCHhHHHHHhcC-CCcEEEEecCCC--------------CCcEEeccCCCCCCC---CCceeEEEEcCc
Q 010086 116 QSAKSLCVETQYGQDVFALKEIG-VEDSIGIFKKSS--------------KPLVISGEGHRIPFD---GNTFDFVFVGGA 177 (518)
Q Consensus 116 ~~~rvLDVGcGtG~~~~~L~~~g-~~~v~gID~s~~--------------~~l~~~~da~~LPf~---D~SFD~V~s~~~ 177 (518)
.|.+||+||=.--. +.+++-.+ ..+++-+|+.+. +...+..|..+ |+| -+.||++++---
T Consensus 44 ~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~-~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 44 EGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRD-PLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp TT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS----TTTSS-BSEEEE---
T ss_pred cCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccc-cCCHHHhcCCCEEEeCCC
Confidence 57899999966432 23333222 478999998641 11123445433 555 479999998541
Q ss_pred eeeccCChHHHHHHHHhcccCCc-EEEEEecCCCc
Q 010086 178 RLEKASKPLDFASEIVRTLKPEG-FAVVHVRAKDE 211 (518)
Q Consensus 178 ~l~~~~dp~~~l~Ei~RVLKPGG-~lvi~~~~~~~ 211 (518)
.-..--..+++-....||.-| ..++.++++++
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~ 154 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEA 154 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT-
T ss_pred --CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcC
Confidence 100001235555566788766 66777777653
No 461
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=27.39 E-value=74 Score=30.13 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=30.7
Q ss_pred CceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHh
Q 010086 318 NRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEE 363 (518)
Q Consensus 318 ~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~ 363 (518)
++..++|+|++ .|. ++..+.+.+|.. .+++++|++|...+.
T Consensus 39 ~~~~vldiG~G-~G~-~~~~~~~~~~~~---~~~~~iD~~~~~~~~ 79 (223)
T TIGR01934 39 KGQKVLDVACG-TGD-LAIELAKSAPDR---GKVTGVDFSSEMLEV 79 (223)
T ss_pred CCCeEEEeCCC-CCh-hHHHHHHhcCCC---ceEEEEECCHHHHHH
Confidence 67889999998 475 446777778741 269999999986543
No 462
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=27.21 E-value=82 Score=31.75 Aligned_cols=42 Identities=14% Similarity=0.323 Sum_probs=29.8
Q ss_pred cccCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchH
Q 010086 314 ISFKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 314 ~s~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~ 362 (518)
+.++++..++|+|++ .|. .+..+.+.|.+ +|+++|.+|...+
T Consensus 48 l~l~~~~~VLDiGcG-~G~-~a~~la~~~~~-----~v~giD~s~~~~~ 89 (263)
T PTZ00098 48 IELNENSKVLDIGSG-LGG-GCKYINEKYGA-----HVHGVDICEKMVN 89 (263)
T ss_pred CCCCCCCEEEEEcCC-CCh-hhHHHHhhcCC-----EEEEEECCHHHHH
Confidence 345677789999999 575 33456555543 7999999997643
No 463
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=27.10 E-value=69 Score=31.36 Aligned_cols=43 Identities=23% Similarity=0.147 Sum_probs=24.6
Q ss_pred cCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhh
Q 010086 316 FKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEY 364 (518)
Q Consensus 316 ~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~ 364 (518)
.+++.+++|+-|| +|. .+--..+..+. -.|||+|.||...+.+
T Consensus 99 v~~~e~VlD~faG-IG~-f~l~~ak~~~~----~~V~A~d~Np~a~~~L 141 (200)
T PF02475_consen 99 VKPGEVVLDMFAG-IGP-FSLPIAKHGKA----KRVYAVDLNPDAVEYL 141 (200)
T ss_dssp --TT-EEEETT-T-TTT-THHHHHHHT-S----SEEEEEES-HHHHHHH
T ss_pred CCcceEEEEccCC-ccH-HHHHHhhhcCc----cEEEEecCCHHHHHHH
Confidence 5678999999999 675 31122233332 2799999999876543
No 464
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=26.96 E-value=83 Score=36.13 Aligned_cols=94 Identities=19% Similarity=0.164 Sum_probs=54.8
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHh-cCC-CcEEEEecCCCCCc--E------EeccCCCCC----CCCCceeEEEEcC
Q 010086 111 EGYLSQSAKSLCVETQYGQDVFALKE-IGV-EDSIGIFKKSSKPL--V------ISGEGHRIP----FDGNTFDFVFVGG 176 (518)
Q Consensus 111 ~gll~~~~rvLDVGcGtG~~~~~L~~-~g~-~~v~gID~s~~~~l--~------~~~da~~LP----f~D~SFD~V~s~~ 176 (518)
-++|.++.-+||+||.+|...+-..+ .++ .-|+|||+.+-.+. . +..+..+.| ..--..|+|+.-+
T Consensus 39 y~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~l~t~~advVLhDg 118 (780)
T KOG1098|consen 39 YKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKILKTWKADVVLHDG 118 (780)
T ss_pred hccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHHHHhCCCcEEeecC
Confidence 46789999999999999988765554 342 57999999753221 1 111111111 1223348888765
Q ss_pred ceeeccC-----Ch-------HHHHHHHHhcccCCcEEEEEe
Q 010086 177 ARLEKAS-----KP-------LDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 177 ~~l~~~~-----dp-------~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
+ +++- |. ..++.-+.-.|..||.++--+
T Consensus 119 a--pnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkv 158 (780)
T KOG1098|consen 119 A--PNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKV 158 (780)
T ss_pred C--CccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccccc
Confidence 3 3331 11 134455566677889855434
No 465
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=26.93 E-value=4.6e+02 Score=26.11 Aligned_cols=113 Identities=13% Similarity=0.260 Sum_probs=64.8
Q ss_pred cCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccch-HhhccCCceEEEeeceeecCCceEEEecCCCCc
Q 010086 316 FKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFH-EEYKVKKKVKLLPYAAWVRNETLSFQINHDPDK 394 (518)
Q Consensus 316 ~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~-~~~~~~~~V~~~~~Av~~~~~tl~f~~~~~~~~ 394 (518)
++| +.+|..|.. +|.|. -||..+-=.-++.|+|..++-|-.-+ ++-..-|+|.++.-
T Consensus 68 ~~P-~lvIE~Gs~-~GGSa-l~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~eg------------------- 125 (237)
T COG3510 68 LQP-SLVIEFGSR-HGGSA-LFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEG------------------- 125 (237)
T ss_pred cCC-ceeEeeccc-cCchh-hhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeC-------------------
Confidence 344 457899987 66666 57765332234678888888764321 12222455555541
Q ss_pred chhhcccCCccccccccCCCCCCCCCcceeecccHHHHHhhcCCCCCeEEEEeeccc------hhhhhHHHHHhcCCccc
Q 010086 395 EVVVKGRGMGRIQPVQSLSDGGFDGEVDRIQGFDFADWLKNTVTDKDFVVMKMDVEG------TEFDLIPRLFETGAICL 468 (518)
Q Consensus 395 ~~~~~~~g~~~i~p~~~~~~~~~~g~~~~v~~vd~s~wl~~~v~~~D~VVlKMDIEG------aE~~vL~~l~~~g~i~~ 468 (518)
+++.| ++.+-++..-....-+.+=.|-.. ||.+++..|.-.|-.|.
T Consensus 126 ---------ss~dp-------------------ai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~v 177 (237)
T COG3510 126 ---------SSTDP-------------------AIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLV 177 (237)
T ss_pred ---------CCCCH-------------------HHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEE
Confidence 11222 122222222111112334444443 79999999999999999
Q ss_pred ccEEEEEeec
Q 010086 469 IDEIFLECHY 478 (518)
Q Consensus 469 IDeLfvE~H~ 478 (518)
|-.--||=|+
T Consensus 178 VeDs~v~dlp 187 (237)
T COG3510 178 VEDSNVNDLP 187 (237)
T ss_pred EecccccCCC
Confidence 8888888888
No 466
>PHA03412 putative methyltransferase; Provisional
Probab=26.74 E-value=76 Score=32.16 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=35.1
Q ss_pred ceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhc-cCCceEEEee
Q 010086 319 RYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYK-VKKKVKLLPY 375 (518)
Q Consensus 319 r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~-~~~~V~~~~~ 375 (518)
+..++|+|+|. |. ++-.+.+.++.+. ..+|+++|.||...+.-+ +.+++.++..
T Consensus 50 ~grVLDlG~GS-G~-Lalala~~~~~~~-~~~V~aVEID~~Al~~Ar~n~~~~~~~~~ 104 (241)
T PHA03412 50 SGSVVDLCAGI-GG-LSFAMVHMMMYAK-PREIVCVELNHTYYKLGKRIVPEATWINA 104 (241)
T ss_pred CCEEEEccChH-HH-HHHHHHHhcccCC-CcEEEEEECCHHHHHHHHhhccCCEEEEc
Confidence 45799999994 74 5445555566432 358999999998654332 3355565554
No 467
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=26.37 E-value=56 Score=20.60 Aligned_cols=16 Identities=38% Similarity=0.972 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhhCCe
Q 010086 497 YEQCLELFTSLRQNGV 512 (518)
Q Consensus 497 ~~~cl~L~~~LR~~Gv 512 (518)
.+++.++|+.++++|+
T Consensus 16 ~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 16 FEEALEVFDEMRERGI 31 (31)
T ss_pred HHHHHHHHHHHhHCcC
Confidence 5899999999999986
No 468
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.32 E-value=1.2e+02 Score=27.58 Aligned_cols=80 Identities=15% Similarity=0.102 Sum_probs=47.0
Q ss_pred CeEEEEcCCCCH-hHHHHHhcCCCcEEEEecCCCCCc----EEeccCCCCCCC-CCceeEEEEcCceeeccCChHHHHHH
Q 010086 118 AKSLCVETQYGQ-DVFALKEIGVEDSIGIFKKSSKPL----VISGEGHRIPFD-GNTFDFVFVGGARLEKASKPLDFASE 191 (518)
Q Consensus 118 ~rvLDVGcGtG~-~~~~L~~~g~~~v~gID~s~~~~l----~~~~da~~LPf~-D~SFD~V~s~~~~l~~~~dp~~~l~E 191 (518)
+||.+||.|-=. .+..|++.| .+++++|+.+...- ++..|..+--.. =.--|+|+|.- -|....+-
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g-~dv~atDI~~~~a~~g~~~v~DDitnP~~~iY~~A~lIYSiR-------pppEl~~~ 86 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERG-FDVLATDINEKTAPEGLRFVVDDITNPNISIYEGADLIYSIR-------PPPELQSA 86 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcC-CcEEEEecccccCcccceEEEccCCCccHHHhhCccceeecC-------CCHHHHHH
Confidence 499999999643 347888888 69999999864221 345554431110 12357777743 14444555
Q ss_pred HHhcccCCcE-EEEE
Q 010086 192 IVRTLKPEGF-AVVH 205 (518)
Q Consensus 192 i~RVLKPGG~-lvi~ 205 (518)
+.+|-|.=|. +++.
T Consensus 87 ildva~aVga~l~I~ 101 (129)
T COG1255 87 ILDVAKAVGAPLYIK 101 (129)
T ss_pred HHHHHHhhCCCEEEE
Confidence 5555555443 5554
No 469
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=26.11 E-value=1e+02 Score=30.22 Aligned_cols=51 Identities=22% Similarity=0.314 Sum_probs=33.5
Q ss_pred CceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhccCCceEEEee
Q 010086 318 NRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYKVKKKVKLLPY 375 (518)
Q Consensus 318 ~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~~~~~V~~~~~ 375 (518)
+-.-++|+|+| .|. ++.-+.+.||.- ++..+|. |...+.-...++|++++.
T Consensus 100 ~~~~vvDvGGG-~G~-~~~~l~~~~P~l----~~~v~Dl-p~v~~~~~~~~rv~~~~g 150 (241)
T PF00891_consen 100 GFKTVVDVGGG-SGH-FAIALARAYPNL----RATVFDL-PEVIEQAKEADRVEFVPG 150 (241)
T ss_dssp TSSEEEEET-T-TSH-HHHHHHHHSTTS----EEEEEE--HHHHCCHHHTTTEEEEES
T ss_pred CccEEEeccCc-chH-HHHHHHHHCCCC----cceeecc-Hhhhhccccccccccccc
Confidence 34569999999 585 557888999954 6788887 544332223677777774
No 470
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=25.73 E-value=3e+02 Score=28.33 Aligned_cols=83 Identities=12% Similarity=0.100 Sum_probs=50.1
Q ss_pred CeEEEEcCCC-CH-hHHHHHhcCCCcEEEEecCCC--------CCcEEe--ccCCCCCC------CCCceeEEEEcCcee
Q 010086 118 AKSLCVETQY-GQ-DVFALKEIGVEDSIGIFKKSS--------KPLVIS--GEGHRIPF------DGNTFDFVFVGGARL 179 (518)
Q Consensus 118 ~rvLDVGcGt-G~-~~~~L~~~g~~~v~gID~s~~--------~~l~~~--~da~~LPf------~D~SFD~V~s~~~~l 179 (518)
.||+-+|+|. |. .+..|.+.| .+|+-++.+.. ..+.+. +.....+. +.+.||+|+..-
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G-~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v--- 78 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAG-LPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLAC--- 78 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCC-CCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEEC---
Confidence 4799999998 44 456777777 58888887531 112221 11111111 124689998753
Q ss_pred eccCChHHHHHHHHhcccCCcEEEEE
Q 010086 180 EKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 180 ~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
...+...+++.+...+.|+..++..
T Consensus 79 -K~~~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 79 -KAYDAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred -CHHhHHHHHHHHHhhCCCCCEEEEE
Confidence 1113456788899999998865544
No 471
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=25.36 E-value=92 Score=30.51 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=27.9
Q ss_pred CceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchH
Q 010086 318 NRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 318 ~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~ 362 (518)
+...++|+|++. |. .+..+.+.++.. +.+|+++|++|...+
T Consensus 53 ~~~~iLDlGcG~-G~-~~~~l~~~~~~p--~~~v~gvD~s~~ml~ 93 (239)
T TIGR00740 53 PDSNVYDLGCSR-GA-ATLSARRNINQP--NVKIIGIDNSQPMVE 93 (239)
T ss_pred CCCEEEEecCCC-CH-HHHHHHHhcCCC--CCeEEEEeCCHHHHH
Confidence 556789999994 75 435566654311 238999999998643
No 472
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=25.26 E-value=2.9e+02 Score=28.86 Aligned_cols=107 Identities=18% Similarity=0.210 Sum_probs=60.3
Q ss_pred ChhHHHHHhhHH---HHHHHHHHcCCCCCCCeEEEEcCCCC--HhHHHHHh-cCCCcEEEEecCCCC---------CcEE
Q 010086 91 SKEWIKAVNFYS---SVFQDLISEGYLSQSAKSLCVETQYG--QDVFALKE-IGVEDSIGIFKKSSK---------PLVI 155 (518)
Q Consensus 91 s~~wr~~v~~~~---~l~~~L~~~gll~~~~rvLDVGcGtG--~~~~~L~~-~g~~~v~gID~s~~~---------~l~~ 155 (518)
+-+|...+.+.. ....-|....-++++.+||-.|+..| ..+..|++ .|. .++++--++.. ..++
T Consensus 114 ~ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi 192 (326)
T COG0604 114 GLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVI 192 (326)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEE
Confidence 455555543321 22233444566788999999996654 45555554 564 55555544210 1111
Q ss_pred e---cc-CCCC-CC-CCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086 156 S---GE-GHRI-PF-DGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 156 ~---~d-a~~L-Pf-~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
. .| .+.+ .+ ...-+|+|+..-. ...+.+..+.|+|||.++..-
T Consensus 193 ~y~~~~~~~~v~~~t~g~gvDvv~D~vG--------~~~~~~~l~~l~~~G~lv~ig 241 (326)
T COG0604 193 NYREEDFVEQVRELTGGKGVDVVLDTVG--------GDTFAASLAALAPGGRLVSIG 241 (326)
T ss_pred cCCcccHHHHHHHHcCCCCceEEEECCC--------HHHHHHHHHHhccCCEEEEEe
Confidence 1 00 1111 11 2236999998653 245777899999999988764
No 473
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=25.23 E-value=1.3e+02 Score=32.81 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=34.4
Q ss_pred CCceEEEEeCCCCCCcchhhhhhhhC-CCCCcceEEEEEcCCccchHhh----c--cCCceEEEee
Q 010086 317 KNRYVYVDVGARSYGSSIGSWFKKQY-PKQNKTFDVYAIEADKTFHEEY----K--VKKKVKLLPY 375 (518)
Q Consensus 317 ~~r~V~iD~GAn~~g~sv~~~F~~~Y-P~~~~~f~V~afE~np~~~~~~----~--~~~~V~~~~~ 375 (518)
+++..++|+|++. |. .+.++.+.+ |.. .|+++|.++...+.. . +..+|+++..
T Consensus 249 ~~g~~VLDlgaG~-G~-~t~~la~~~~~~~----~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~ 308 (444)
T PRK14902 249 KGGDTVLDACAAP-GG-KTTHIAELLKNTG----KVVALDIHEHKLKLIEENAKRLGLTNIETKAL 308 (444)
T ss_pred CCCCEEEEeCCCC-CH-HHHHHHHHhCCCC----EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 4678899999994 74 445666655 432 799999999754322 1 2245666554
No 474
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=25.11 E-value=1.2e+02 Score=30.49 Aligned_cols=54 Identities=13% Similarity=0.032 Sum_probs=34.4
Q ss_pred CCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhc------cCCceEEEee
Q 010086 317 KNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYK------VKKKVKLLPY 375 (518)
Q Consensus 317 ~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~------~~~~V~~~~~ 375 (518)
+++..++|+||+. |. .+..+.+..+.. -.|+++|.++...+... ...+|+++..
T Consensus 70 ~~g~~VLDl~ag~-G~-kt~~la~~~~~~---g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~ 129 (264)
T TIGR00446 70 DPPERVLDMAAAP-GG-KTTQISALMKNE---GAIVANEFSKSRTKVLIANINRCGVLNVAVTNF 129 (264)
T ss_pred CCcCEEEEECCCc-hH-HHHHHHHHcCCC---CEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecC
Confidence 5678899999984 64 434555555422 17999999998654322 2346666554
No 475
>PRK13687 hypothetical protein; Provisional
Probab=24.91 E-value=1.4e+02 Score=25.38 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=39.4
Q ss_pred eeccchhhhhHHHHHhcCCccccc-----EEEEEeecccccccCCCCCCCcccccHHHH-HHHHHHHhhCC
Q 010086 447 MDVEGTEFDLIPRLFETGAICLID-----EIFLECHYNRWQRCCPGQRSPKYKKTYEQC-LELFTSLRQNG 511 (518)
Q Consensus 447 MDIEGaE~~vL~~l~~~g~i~~ID-----eLfvE~H~~~~~~~~~g~~~~~~~~~~~~c-l~L~~~LR~~G 511 (518)
|||.-.|--+|.-|.+-|.|.... -..|||-.+. |- -+.+| |++|.+|+.+.
T Consensus 1 MnISk~EQRvLHvLAqGGrI~~~rd~~gri~~v~C~TRe------G~-------~l~dctl~vF~kLK~kr 58 (85)
T PRK13687 1 MNISRQEQRTLHVLAQGGRIEHERDDSGRITAVECYTRE------GW-------LLADCTLAVFKKLKRKR 58 (85)
T ss_pred CCccHHHHHHHHHHhcCCeEEEEECCCCcEEEEEEEccC------Cc-------ccCCCCHHHHHHHHhhc
Confidence 899999999999999999997654 5789998653 11 12234 67999998764
No 476
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=24.90 E-value=1.5e+02 Score=25.49 Aligned_cols=35 Identities=29% Similarity=0.286 Sum_probs=27.5
Q ss_pred CCCceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEEe
Q 010086 165 DGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV 206 (518)
Q Consensus 165 ~D~SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~~ 206 (518)
++.-+|.|+-... -...+++...+|+|||.+++.-
T Consensus 55 ~~~~~d~vid~~g-------~~~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 55 GGRGVDVVIDCVG-------SGDTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp TTSSEEEEEESSS-------SHHHHHHHHHHEEEEEEEEEES
T ss_pred ccccceEEEEecC-------cHHHHHHHHHHhccCCEEEEEE
Confidence 3468999997653 1367899999999999998874
No 477
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=24.80 E-value=1.3e+02 Score=31.44 Aligned_cols=39 Identities=21% Similarity=0.118 Sum_probs=27.0
Q ss_pred cCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccch
Q 010086 316 FKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFH 361 (518)
Q Consensus 316 ~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~ 361 (518)
..+++.++|+|+|. |. ....+...++. .|+++|+++.+.
T Consensus 119 ~~~g~~VLDvGCG~-G~-~~~~~~~~g~~-----~v~GiDpS~~ml 157 (314)
T TIGR00452 119 PLKGRTILDVGCGS-GY-HMWRMLGHGAK-----SLVGIDPTVLFL 157 (314)
T ss_pred CCCCCEEEEeccCC-cH-HHHHHHHcCCC-----EEEEEcCCHHHH
Confidence 34567899999984 74 33344444442 699999999754
No 478
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=24.24 E-value=8.2e+02 Score=25.41 Aligned_cols=92 Identities=17% Similarity=0.259 Sum_probs=56.6
Q ss_pred CCCCeEEEEcCCCCHhHHH----HHhcCC-CcEEEEecCC-------------CCCcEEe---ccC----CCCCCCCCce
Q 010086 115 SQSAKSLCVETQYGQDVFA----LKEIGV-EDSIGIFKKS-------------SKPLVIS---GEG----HRIPFDGNTF 169 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~----L~~~g~-~~v~gID~s~-------------~~~l~~~---~da----~~LPf~D~SF 169 (518)
..+...+++|.|+..-+.. ++..|. ...+.||++. ++.+-+. +|- ..+| .-++=
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~-~~~~R 155 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP-RGGRR 155 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc-CCCeE
Confidence 3467899999999876644 444453 5788999873 3333332 221 2233 22333
Q ss_pred eEEEEcCceeeccCC-h-HHHHHHHHhcccCCcEEEEEecC
Q 010086 170 DFVFVGGARLEKASK-P-LDFASEIVRTLKPEGFAVVHVRA 208 (518)
Q Consensus 170 D~V~s~~~~l~~~~d-p-~~~l~Ei~RVLKPGG~lvi~~~~ 208 (518)
=++|-... +-++.. + ..++..+.-+|+||-++.+.+..
T Consensus 156 l~~flGSt-lGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl 195 (321)
T COG4301 156 LFVFLGST-LGNLTPGECAVFLTQLRGALRPGDYFLLGVDL 195 (321)
T ss_pred EEEEeccc-ccCCChHHHHHHHHHHHhcCCCcceEEEeccc
Confidence 33443333 666642 2 35788899999999999988753
No 479
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=23.98 E-value=75 Score=34.22 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=29.6
Q ss_pred eEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchH
Q 010086 320 YVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 320 ~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~ 362 (518)
.-++|+|+| .|. ++-++.+.+|.. +|+++|.|+...+
T Consensus 230 ~~VLDLGCG-tGv-i~i~la~~~P~~----~V~~vD~S~~Av~ 266 (378)
T PRK15001 230 GEIVDLGCG-NGV-IGLTLLDKNPQA----KVVFVDESPMAVA 266 (378)
T ss_pred CeEEEEecc-ccH-HHHHHHHhCCCC----EEEEEECCHHHHH
Confidence 368999998 484 767888889964 8999999987543
No 480
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=23.63 E-value=5.5e+02 Score=25.66 Aligned_cols=89 Identities=19% Similarity=0.160 Sum_probs=50.4
Q ss_pred HHHcCCCCCCCeEEEEcCC--CCHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCCC-----CCCCCcee
Q 010086 108 LISEGYLSQSAKSLCVETQ--YGQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHRI-----PFDGNTFD 170 (518)
Q Consensus 108 L~~~gll~~~~rvLDVGcG--tG~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~L-----Pf~D~SFD 170 (518)
+...+.+.++.++|-.|++ .|..+..+++ .| .+++.++.++.. ..++..+..++ ...+..+|
T Consensus 131 l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vd 209 (329)
T cd08250 131 LEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAG-CHVIGTCSSDEKAEFLKSLGCDRPINYKTEDLGEVLKKEYPKGVD 209 (329)
T ss_pred HHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHcCCceEEeCCCccHHHHHHHhcCCCCe
Confidence 3344557889999999853 2665544444 45 467777654210 01111111100 01124588
Q ss_pred EEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 171 FVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 171 ~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
+|+.... ...+.++.+.|+++|.++..
T Consensus 210 ~v~~~~g--------~~~~~~~~~~l~~~g~~v~~ 236 (329)
T cd08250 210 VVYESVG--------GEMFDTCVDNLALKGRLIVI 236 (329)
T ss_pred EEEECCc--------HHHHHHHHHHhccCCeEEEE
Confidence 8887542 24578889999999987754
No 481
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=23.58 E-value=80 Score=30.01 Aligned_cols=48 Identities=21% Similarity=0.258 Sum_probs=29.5
Q ss_pred eEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccch-------HhhccCCceEEEee
Q 010086 320 YVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFH-------EEYKVKKKVKLLPY 375 (518)
Q Consensus 320 ~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~-------~~~~~~~~V~~~~~ 375 (518)
.+++|+-++ .|... --|.+... .|+|+|-||... +-|....+|.++.-
T Consensus 1 ~~vlD~fcG-~GGNt-IqFA~~~~------~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~g 55 (163)
T PF09445_consen 1 TTVLDAFCG-VGGNT-IQFARTFD------RVIAIDIDPERLECAKHNAEVYGVADNIDFICG 55 (163)
T ss_dssp SEEEETT-T-TSHHH-HHHHHTT-------EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES
T ss_pred CEEEEeccC-cCHHH-HHHHHhCC------eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeC
Confidence 378998888 45422 35555544 799999999853 23555667887775
No 482
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=23.49 E-value=6.5e+02 Score=23.98 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=24.3
Q ss_pred ceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchH
Q 010086 319 RYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 319 r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~ 362 (518)
+..++|++|++ |. ++--...... . .|+++|.|+...+
T Consensus 50 g~~vLDLfaGs-G~-lglea~srga-~----~v~~vE~~~~a~~ 86 (189)
T TIGR00095 50 GAHLLDVFAGS-GL-LGEEALSRGA-K----VAFLEEDDRKANQ 86 (189)
T ss_pred CCEEEEecCCC-cH-HHHHHHhCCC-C----EEEEEeCCHHHHH
Confidence 56799999995 73 5323332222 1 7999999997643
No 483
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=23.37 E-value=4.7e+02 Score=25.99 Aligned_cols=85 Identities=16% Similarity=0.116 Sum_probs=47.0
Q ss_pred CCCCCCCeEEEEcCCC--CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCCC------CCCCCceeEEE
Q 010086 112 GYLSQSAKSLCVETQY--GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHRI------PFDGNTFDFVF 173 (518)
Q Consensus 112 gll~~~~rvLDVGcGt--G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~L------Pf~D~SFD~V~ 173 (518)
..++++.++|-.|+.. |..+..+++ .| ..++.+.-+... ..++......+ -.+...+|+|+
T Consensus 135 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G-~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~ 213 (324)
T cd08292 135 LGVKPGQWLIQNAAGGAVGKLVAMLAAARG-INVINLVRRDAGVAELRALGIGPVVSTEQPGWQDKVREAAGGAPISVAL 213 (324)
T ss_pred hCCCCCCEEEEcccccHHHHHHHHHHHHCC-CeEEEEecCHHHHHHHHhcCCCEEEcCCCchHHHHHHHHhCCCCCcEEE
Confidence 4577899999988632 555544544 56 455555432210 00111110000 01223589988
Q ss_pred EcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 174 VGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 174 s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
.... . ..+.+..+.|+++|.++..
T Consensus 214 d~~g------~--~~~~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 214 DSVG------G--KLAGELLSLLGEGGTLVSF 237 (324)
T ss_pred ECCC------C--hhHHHHHHhhcCCcEEEEE
Confidence 7542 1 2467889999999998764
No 484
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=23.34 E-value=5.3e+02 Score=25.90 Aligned_cols=89 Identities=11% Similarity=0.076 Sum_probs=47.6
Q ss_pred HHHcCCCCCCCeEEEEcCCC-CHhHHHHHh-cCCCcEEEEecCCCC---------CcEEeccCCCCC--------CCCCc
Q 010086 108 LISEGYLSQSAKSLCVETQY-GQDVFALKE-IGVEDSIGIFKKSSK---------PLVISGEGHRIP--------FDGNT 168 (518)
Q Consensus 108 L~~~gll~~~~rvLDVGcGt-G~~~~~L~~-~g~~~v~gID~s~~~---------~l~~~~da~~LP--------f~D~S 168 (518)
+...+.++++..||--|+|. |..+..+++ .| .+++.+..+... ..-.. +..... .+...
T Consensus 156 l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G-~~v~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~l~~~~~~~~ 233 (306)
T cd08258 156 VAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQG-ATVVVVGTEKDEVRLDVAKELGADAV-NGGEEDLAELVNEITDGDG 233 (306)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CEEEEECCCCCHHHHHHHHHhCCccc-CCCcCCHHHHHHHHcCCCC
Confidence 33444567888888866542 344434443 45 456665322110 00000 111100 13345
Q ss_pred eeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 169 FDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 169 FD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
+|.++.... ....+.+..+.|+++|.++..
T Consensus 234 vd~vld~~g-------~~~~~~~~~~~l~~~G~~v~~ 263 (306)
T cd08258 234 ADVVIECSG-------AVPALEQALELLRKGGRIVQV 263 (306)
T ss_pred CCEEEECCC-------ChHHHHHHHHHhhcCCEEEEE
Confidence 888887532 124678899999999998865
No 485
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=23.25 E-value=82 Score=20.08 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=16.2
Q ss_pred cHHHHHHHHHHHhhCCeee
Q 010086 496 TYEQCLELFTSLRQNGVLV 514 (518)
Q Consensus 496 ~~~~cl~L~~~LR~~Gv~v 514 (518)
-.++++++|..++++|+..
T Consensus 15 ~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 15 RVEEALELFKEMLERGIEP 33 (35)
T ss_pred CHHHHHHHHHHHHHcCCCC
Confidence 3589999999999999753
No 486
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=23.16 E-value=3.4e+02 Score=29.18 Aligned_cols=88 Identities=10% Similarity=0.095 Sum_probs=51.1
Q ss_pred cCCCCCCCeEEEEcCCC-CHhH-HHHHhcCCCcEEEEecCCCCC---------cEEeccCC-----C-CCCCCCceeEEE
Q 010086 111 EGYLSQSAKSLCVETQY-GQDV-FALKEIGVEDSIGIFKKSSKP---------LVISGEGH-----R-IPFDGNTFDFVF 173 (518)
Q Consensus 111 ~gll~~~~rvLDVGcGt-G~~~-~~L~~~g~~~v~gID~s~~~~---------l~~~~da~-----~-LPf~D~SFD~V~ 173 (518)
.+.+++|+.+.-+|||. |..+ +.++..|...+++||+.+..- .++..... . ...-+.-.|.+|
T Consensus 180 ta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~ 259 (366)
T COG1062 180 TAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAF 259 (366)
T ss_pred cccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEE
Confidence 34578999999999997 5544 333446778999999975210 01111000 0 012333555555
Q ss_pred EcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 174 VGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 174 s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
-.-. ++ ..++.....+.++|..++.
T Consensus 260 e~~G------~~-~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 260 ECVG------NV-EVMRQALEATHRGGTSVII 284 (366)
T ss_pred EccC------CH-HHHHHHHHHHhcCCeEEEE
Confidence 4322 12 2566677777789987775
No 487
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=23.05 E-value=2.8e+02 Score=27.82 Aligned_cols=82 Identities=17% Similarity=0.148 Sum_probs=48.5
Q ss_pred CCCCCCCeEEEEcC-CC-CHhHHHHHh-cCCCcEEEEecCCC----C-CcEEecc-----CCCCCCCCCceeEEEEcCce
Q 010086 112 GYLSQSAKSLCVET-QY-GQDVFALKE-IGVEDSIGIFKKSS----K-PLVISGE-----GHRIPFDGNTFDFVFVGGAR 178 (518)
Q Consensus 112 gll~~~~rvLDVGc-Gt-G~~~~~L~~-~g~~~v~gID~s~~----~-~l~~~~d-----a~~LPf~D~SFD~V~s~~~~ 178 (518)
..++++.++|-+|+ |. |..+..+++ .| .++++++..+. . ..++..+ ...+. +.+|+|+....
T Consensus 158 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G-~~v~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~---~~~d~vl~~~g- 232 (325)
T cd08264 158 AGLGPGETVVVFGASGNTGIFAVQLAKMMG-AEVIAVSRKDWLKEFGADEVVDYDEVEEKVKEIT---KMADVVINSLG- 232 (325)
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHcC-CeEEEEeHHHHHHHhCCCeeecchHHHHHHHHHh---CCCCEEEECCC-
Confidence 45788999999997 43 665544444 56 56777753210 0 0011000 01111 45888886432
Q ss_pred eeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 179 LEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 179 l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
. ..+.+..|.|+|+|.++..
T Consensus 233 ------~-~~~~~~~~~l~~~g~~v~~ 252 (325)
T cd08264 233 ------S-SFWDLSLSVLGRGGRLVTF 252 (325)
T ss_pred ------H-HHHHHHHHhhccCCEEEEE
Confidence 1 3678999999999998764
No 488
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=23.02 E-value=6.5e+02 Score=23.80 Aligned_cols=87 Identities=22% Similarity=0.221 Sum_probs=51.0
Q ss_pred CCCCeEEEEcCCCCHhHHHHHh--cCCCcEEEEecCCC----CCc-EEec---cCCCCC--CCCCceeEEEEcCceeecc
Q 010086 115 SQSAKSLCVETQYGQDVFALKE--IGVEDSIGIFKKSS----KPL-VISG---EGHRIP--FDGNTFDFVFVGGARLEKA 182 (518)
Q Consensus 115 ~~~~rvLDVGcGtG~~~~~L~~--~g~~~v~gID~s~~----~~l-~~~~---da~~LP--f~D~SFD~V~s~~~~l~~~ 182 (518)
.++.+|+||||-+ +..++++ ....+++-.|.... +.. ++.- ..+.+| + .++||+|++--= | +
T Consensus 24 ~~~~~iaclstPs--l~~~l~~~~~~~~~~~Lle~D~RF~~~~~~~F~fyD~~~p~~~~~~l-~~~~d~vv~DPP-F--l 97 (162)
T PF10237_consen 24 LDDTRIACLSTPS--LYEALKKESKPRIQSFLLEYDRRFEQFGGDEFVFYDYNEPEELPEEL-KGKFDVVVIDPP-F--L 97 (162)
T ss_pred CCCCEEEEEeCcH--HHHHHHhhcCCCccEEEEeecchHHhcCCcceEECCCCChhhhhhhc-CCCceEEEECCC-C--C
Confidence 3568999999996 3344554 22357888887642 222 3322 234454 4 679999998542 3 1
Q ss_pred CC-hHHHHHHHHhcc-cCCcEEEEEec
Q 010086 183 SK-PLDFASEIVRTL-KPEGFAVVHVR 207 (518)
Q Consensus 183 ~d-p~~~l~Ei~RVL-KPGG~lvi~~~ 207 (518)
.. -..-..+..|.| ||++.+++.++
T Consensus 98 ~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 98 SEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred CHHHHHHHHHHHHHHhCccceEEEecH
Confidence 11 122234555555 77788887775
No 489
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=22.72 E-value=86 Score=29.90 Aligned_cols=39 Identities=15% Similarity=0.338 Sum_probs=29.3
Q ss_pred ceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHh
Q 010086 319 RYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEE 363 (518)
Q Consensus 319 r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~ 363 (518)
...++|+|++ .|. .+..+.+.+|.. .|+++|++|.....
T Consensus 35 ~~~vLDlG~G-~G~-~~~~l~~~~~~~----~~~~~D~~~~~~~~ 73 (240)
T TIGR02072 35 PASVLDIGCG-TGY-LTRALLKRFPQA----EFIALDISAGMLAQ 73 (240)
T ss_pred CCeEEEECCC-ccH-HHHHHHHhCCCC----cEEEEeChHHHHHH
Confidence 3568999999 475 446778888743 69999999986543
No 490
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=22.65 E-value=1.2e+02 Score=25.22 Aligned_cols=38 Identities=13% Similarity=0.271 Sum_probs=23.1
Q ss_pred EEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchH
Q 010086 322 YVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 322 ~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~ 362 (518)
++|+|++ -|... ..|.+.+|.. ...+++++|.++...+
T Consensus 1 ILDlgcG-~G~~~-~~l~~~~~~~-~~~~~~gvD~s~~~l~ 38 (101)
T PF13649_consen 1 ILDLGCG-TGRVT-RALARRFDAG-PSSRVIGVDISPEMLE 38 (101)
T ss_dssp -EEET-T-TSHHH-HHHHHHS------SEEEEEES-HHHHH
T ss_pred CEEeecC-CcHHH-HHHHHHhhhc-ccceEEEEECCHHHHH
Confidence 5899998 47644 6777776332 1248999999998754
No 491
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=22.64 E-value=3.7e+02 Score=26.19 Aligned_cols=89 Identities=20% Similarity=0.232 Sum_probs=50.7
Q ss_pred HHHcCCCCCCCeEEEEcC-C-CCHhHHHHHh-cCCCcEEEEecCCCC--------C-cEEeccCCC----C-C-CCCCce
Q 010086 108 LISEGYLSQSAKSLCVET-Q-YGQDVFALKE-IGVEDSIGIFKKSSK--------P-LVISGEGHR----I-P-FDGNTF 169 (518)
Q Consensus 108 L~~~gll~~~~rvLDVGc-G-tG~~~~~L~~-~g~~~v~gID~s~~~--------~-l~~~~da~~----L-P-f~D~SF 169 (518)
+...+.+.++.++|-.|+ | .|..+..+++ .| ..+++++.++.. . .++...... + . .....+
T Consensus 128 l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (320)
T cd05286 128 LRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALG-ATVIGTVSSEEKAELARAAGADHVINYRDEDFVERVREITGGRGV 206 (320)
T ss_pred HHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCe
Confidence 334455778999999995 3 3555544444 56 567777654210 0 011110000 0 0 123468
Q ss_pred eEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 170 DFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 170 D~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
|+|+.... ...+.++.+.|+++|.++..
T Consensus 207 d~vl~~~~--------~~~~~~~~~~l~~~g~~v~~ 234 (320)
T cd05286 207 DVVYDGVG--------KDTFEGSLDSLRPRGTLVSF 234 (320)
T ss_pred eEEEECCC--------cHhHHHHHHhhccCcEEEEE
Confidence 99887542 13567888999999997754
No 492
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=22.54 E-value=1.4e+02 Score=28.98 Aligned_cols=51 Identities=22% Similarity=0.218 Sum_probs=34.2
Q ss_pred ceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhh------ccCCceEEEee
Q 010086 319 RYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEY------KVKKKVKLLPY 375 (518)
Q Consensus 319 r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~------~~~~~V~~~~~ 375 (518)
...++|+|++. |. ++..+.+.+|.. .|+++|.++...+.- .+.++++++..
T Consensus 88 ~~~ilDig~G~-G~-~~~~l~~~~~~~----~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~ 144 (251)
T TIGR03534 88 PLRVLDLGTGS-GA-IALALAKERPDA----RVTAVDISPEALAVARKNAARLGLDNVTFLQS 144 (251)
T ss_pred CCeEEEEeCcH-hH-HHHHHHHHCCCC----EEEEEECCHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 34699999994 74 546677777743 899999999864421 12345666654
No 493
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=22.51 E-value=2.9e+02 Score=27.69 Aligned_cols=87 Identities=13% Similarity=0.101 Sum_probs=49.1
Q ss_pred HcCCCCCCCeEEEEcC-CC-CHhHHHHHh-cCCCcEEEEecCCC---------CC-cEEeccCCC----C-CCCCCceeE
Q 010086 110 SEGYLSQSAKSLCVET-QY-GQDVFALKE-IGVEDSIGIFKKSS---------KP-LVISGEGHR----I-PFDGNTFDF 171 (518)
Q Consensus 110 ~~gll~~~~rvLDVGc-Gt-G~~~~~L~~-~g~~~v~gID~s~~---------~~-l~~~~da~~----L-Pf~D~SFD~ 171 (518)
..+.+.++.++|-.|+ |. |..+..+++ .| .++++++.++. .. .++.....+ + ......+|.
T Consensus 139 ~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G-~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~d~ 217 (329)
T cd05288 139 EIGKPKPGETVVVSAAAGAVGSVVGQIAKLLG-ARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAAPDGIDV 217 (329)
T ss_pred hccCCCCCCEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhccCCceE
Confidence 3445678899999985 32 555544443 56 47888875421 00 111111000 0 011245888
Q ss_pred EEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 172 VFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 172 V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
++.... ...+.+..+.|+++|.++..
T Consensus 218 vi~~~g--------~~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 218 YFDNVG--------GEILDAALTLLNKGGRIALC 243 (329)
T ss_pred EEEcch--------HHHHHHHHHhcCCCceEEEE
Confidence 886432 13678899999999997654
No 494
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some
Probab=22.42 E-value=1.7e+02 Score=25.31 Aligned_cols=48 Identities=21% Similarity=0.269 Sum_probs=35.8
Q ss_pred hhhhHHHHHhcCCcccccEEEEEeecccccccCCCCCCCcccccHHHHHHHHHHHhhCCeeee
Q 010086 453 EFDLIPRLFETGAICLIDEIFLECHYNRWQRCCPGQRSPKYKKTYEQCLELFTSLRQNGVLVH 515 (518)
Q Consensus 453 E~~vL~~l~~~g~i~~IDeLfvE~H~~~~~~~~~g~~~~~~~~~~~~cl~L~~~LR~~Gv~vH 515 (518)
+-+-+.+|++ .++.+|.|.+.--++. .+...|+..++..|+++|+.+|
T Consensus 41 ~R~~~~~ll~--~~~~~d~lvv~~~dRl-------------~R~~~e~~~~~~~l~~~gi~l~ 88 (126)
T cd03768 41 ERPELQKLLE--DLREGDTLVVTKLDRL-------------GRSTKDLLEIVEELREKGVSLR 88 (126)
T ss_pred CCHHHHHHHH--hCcCCCEEEEEEcchh-------------cCcHHHHHHHHHHHHHCCCEEE
Confidence 5677888876 2457888888754432 2345799999999999999987
No 495
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=22.12 E-value=1.7e+02 Score=28.93 Aligned_cols=50 Identities=24% Similarity=0.183 Sum_probs=35.6
Q ss_pred cCCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchHhhccCCceEEEee
Q 010086 316 FKNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYKVKKKVKLLPY 375 (518)
Q Consensus 316 ~~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~~~~~~~~V~~~~~ 375 (518)
++++.++||+||- =| ++++...+.-.... .|+++|.+|-- ..+||.++..
T Consensus 43 ~~~~~~ViDLGAA-PG-gWsQva~~~~~~~~---~ivavDi~p~~-----~~~~V~~iq~ 92 (205)
T COG0293 43 FKPGMVVVDLGAA-PG-GWSQVAAKKLGAGG---KIVAVDILPMK-----PIPGVIFLQG 92 (205)
T ss_pred ecCCCEEEEcCCC-CC-cHHHHHHHHhCCCC---cEEEEECcccc-----cCCCceEEee
Confidence 5689999999996 47 48676666554322 49999998852 3567777764
No 496
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=22.11 E-value=2.6e+02 Score=29.26 Aligned_cols=30 Identities=20% Similarity=0.118 Sum_probs=22.1
Q ss_pred ceeEEEEcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 168 TFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 168 SFD~V~s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
.+|.|+.... ...+.+..+.|+++|+++..
T Consensus 285 g~d~vid~~g--------~~~~~~~~~~l~~~G~~v~~ 314 (393)
T cd08246 285 DPDIVFEHPG--------RATFPTSVFVCDRGGMVVIC 314 (393)
T ss_pred CCeEEEECCc--------hHhHHHHHHHhccCCEEEEE
Confidence 5888886532 13477889999999998864
No 497
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=21.83 E-value=2e+02 Score=28.39 Aligned_cols=54 Identities=13% Similarity=0.230 Sum_probs=28.0
Q ss_pred ceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchH--hhcc---CCceEEEe
Q 010086 319 RYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHE--EYKV---KKKVKLLP 374 (518)
Q Consensus 319 r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~--~~~~---~~~V~~~~ 374 (518)
=+++|.+|.- .|.|+ -|+..+.-.-+...+|+++|.|...+. .+.. .++|+++.
T Consensus 33 Pd~IIE~Gi~-~GGSl-i~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~ 91 (206)
T PF04989_consen 33 PDLIIETGIA-HGGSL-IFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQ 91 (206)
T ss_dssp -SEEEEE--T-TSHHH-HHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEE
T ss_pred CCeEEEEecC-CCchH-HHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEE
Confidence 3578999986 46677 577654322222348999999765432 1221 36777666
No 498
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=21.62 E-value=1.4e+02 Score=32.14 Aligned_cols=38 Identities=24% Similarity=0.107 Sum_probs=27.1
Q ss_pred CCceEEEEeCCCCCCcchhhhhhhhCCCCCcceEEEEEcCCccchH
Q 010086 317 KNRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHE 362 (518)
Q Consensus 317 ~~r~V~iD~GAn~~g~sv~~~F~~~YP~~~~~f~V~afE~np~~~~ 362 (518)
.+...++|+|++ .|. ++-++.+.. ..|+++|.|+...+
T Consensus 291 ~~~~~vLDl~cG-~G~-~sl~la~~~------~~V~~vE~~~~av~ 328 (431)
T TIGR00479 291 QGEELVVDAYCG-VGT-FTLPLAKQA------KSVVGIEVVPESVE 328 (431)
T ss_pred CCCCEEEEcCCC-cCH-HHHHHHHhC------CEEEEEEcCHHHHH
Confidence 456789999999 575 544555432 27999999998644
No 499
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=21.59 E-value=1.8e+02 Score=25.84 Aligned_cols=71 Identities=18% Similarity=0.232 Sum_probs=44.5
Q ss_pred cHHHHHhhcCCCCCeEEEEe--ec--cch--hhhhHHHHHhcCCcccccEEEEEeecccccccCCCCCCCcccccHHHHH
Q 010086 428 DFADWLKNTVTDKDFVVMKM--DV--EGT--EFDLIPRLFETGAICLIDEIFLECHYNRWQRCCPGQRSPKYKKTYEQCL 501 (518)
Q Consensus 428 d~s~wl~~~v~~~D~VVlKM--DI--EGa--E~~vL~~l~~~g~i~~IDeLfvE~H~~~~~~~~~g~~~~~~~~~~~~cl 501 (518)
.+.+|..++ .+.+.+. |. .|. +-+-+.+|++.=.-..+|.|.+.-.++. .+...|++
T Consensus 23 ~~~~~a~~~----g~~i~~~~~d~~~Sg~~~~Rp~l~~ll~~~~~g~~~~ivv~~~~Rl-------------~R~~~~~~ 85 (148)
T smart00857 23 ALRAYAKAN----GWEVVRIYEDEGVSGKKADRPGLQRLLADLRAGDIDVLVVYKLDRL-------------GRSLRDLL 85 (148)
T ss_pred HHHHHHHHC----CCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHcCCCCEEEEeccchh-------------hCcHHHHH
Confidence 455666554 3444443 44 232 3566777765211134678888766542 24457999
Q ss_pred HHHHHHhhCCeeee
Q 010086 502 ELFTSLRQNGVLVH 515 (518)
Q Consensus 502 ~L~~~LR~~Gv~vH 515 (518)
.++..|+.+|+.+|
T Consensus 86 ~~~~~l~~~gi~l~ 99 (148)
T smart00857 86 ALLELLEKKGVRLV 99 (148)
T ss_pred HHHHHHHHCCCEEE
Confidence 99999999999987
No 500
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=21.53 E-value=7.3e+02 Score=24.36 Aligned_cols=88 Identities=14% Similarity=0.184 Sum_probs=48.4
Q ss_pred cCCCCCCCeEEEEcCCC-CHhHHHHH-hcCCCcEEEEecCCCC---------CcEEeccCCC----C--CCCCCceeEEE
Q 010086 111 EGYLSQSAKSLCVETQY-GQDVFALK-EIGVEDSIGIFKKSSK---------PLVISGEGHR----I--PFDGNTFDFVF 173 (518)
Q Consensus 111 ~gll~~~~rvLDVGcGt-G~~~~~L~-~~g~~~v~gID~s~~~---------~l~~~~da~~----L--Pf~D~SFD~V~ 173 (518)
...++++.++|-.|+|. |..+..++ ..|...++.+.-++.. ..+......+ + ..+...+|+++
T Consensus 124 ~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vl 203 (312)
T cd08269 124 RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVI 203 (312)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEE
Confidence 34567889999887643 44433333 3564337776643210 0011110000 0 01234589888
Q ss_pred EcCceeeccCChHHHHHHHHhcccCCcEEEEE
Q 010086 174 VGGARLEKASKPLDFASEIVRTLKPEGFAVVH 205 (518)
Q Consensus 174 s~~~~l~~~~dp~~~l~Ei~RVLKPGG~lvi~ 205 (518)
.... ....+.++.|.|+++|.++..
T Consensus 204 d~~g-------~~~~~~~~~~~l~~~g~~~~~ 228 (312)
T cd08269 204 EAVG-------HQWPLDLAGELVAERGRLVIF 228 (312)
T ss_pred ECCC-------CHHHHHHHHHHhccCCEEEEE
Confidence 7542 123578899999999998765
Done!