BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010087
(518 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q91WU4|TMCO4_MOUSE Transmembrane and coiled-coil domain-containing protein 4 OS=Mus
musculus GN=Tmco4 PE=2 SV=2
Length = 631
Score = 221 bits (563), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/294 (40%), Positives = 184/294 (62%), Gaps = 12/294 (4%)
Query: 205 VIGASGFAAAASAAGTVAGSVAVAASFGAAGAGLTGSKMARRIGSVDEFEFKAIGENQNQ 264
+IG++G A+A G+VAG + + FGAAGAGLTG KM +R+G+++EF F + E +
Sbjct: 219 IIGSAG----AAALGSVAGIAVMTSLFGAAGAGLTGYKMKKRVGAIEEFMFLPLTEGR-- 272
Query: 265 GRLAVEILISGVVFD--QEDFVRPWEGQNDNMERYVLQWESKNLIAVSTAIQDWLTSRIA 322
+L + I I+G + F PW + E+Y L WE+K L+ + A++ L S +A
Sbjct: 273 -QLHITIAITGWLGSGRYRTFNAPWMALARSQEQYCLAWEAKYLMELGNALETIL-SGLA 330
Query: 323 MELMKQGAMMTVLKTLLAALAWPATLVFAADLIDSKWTIAVDRSDKAGKLLAEVLMQGLQ 382
+ ++ TVL ++AAL WPA+L+ A++ID+ W + + RS + GK LA +L+ Q
Sbjct: 331 NMVAQEALKYTVLSGIVAALTWPASLLSVANVIDNPWGVCLHRSAEVGKHLAHILLSRQQ 390
Query: 383 GYRPVTLIGYSLGARVIFKCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAG 442
G RPVTLIG+SLGARVI+ CL+ +A+ + GI+E VVLLGAP+ ++WE R +V+G
Sbjct: 391 GRRPVTLIGFSLGARVIYFCLQEMAQEQDCQGIIEDVVLLGAPVEGDPKHWEPFRNVVSG 450
Query: 443 RFINCYATNDWTLAIAFRASLLSQGLAGIQPI--NGLGIENIDVTHLIEGHSSY 494
R IN Y DW L+ +R S + +AG+QP+ +EN+D+T ++ GH Y
Sbjct: 451 RIINGYCRGDWLLSFVYRTSSVQLRVAGLQPVLLQDRRMENVDLTSVVNGHLDY 504
>sp|Q20035|TMCO4_CAEEL Uncharacterized membrane protein F35D11.3 OS=Caenorhabditis elegans
GN=F35D11.3 PE=3 SV=2
Length = 617
Score = 221 bits (562), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 142/400 (35%), Positives = 218/400 (54%), Gaps = 25/400 (6%)
Query: 102 GYDSRHRVALRLLATWLDIKWIKMEAVEMMVASSAMAVRKAEASKEEEATSSESKWAKWK 161
YDSR+RV LR L T L + W + E VE +AS+ + + E+ ++ K K
Sbjct: 157 NYDSRYRVFLRHLTTLLGVVWTEFEDVEDSLASTLLEEQFVESEHSRTVREKTARNKKIK 216
Query: 162 RGGIIGAAALTGGTLMAITGGLAAPAIAAGFSALAPTLGTLIPVIGASGFAAAASAAGTV 221
R +IGAA GG L+ +TGGLAAP +AA L IG A + T
Sbjct: 217 RYLMIGAAGGVGGVLIGLTGGLAAPLVAASAGML----------IGG----GAVAGLATT 262
Query: 222 AGSVAVAASFGAAGAGLTGSKMARRIGSVDEFEFKAIGENQNQGRLAVEILISGVV---- 277
AG+ + + G AGAG TG KM +R+G+++EF + + E + L+ +++SG +
Sbjct: 263 AGAAVLGTTMGVAGAGFTGYKMKKRVGAIEEFSVETLSEGVS---LSCSLVVSGWIESDT 319
Query: 278 FDQEDFVRPWEGQNDNMERYVLQWESKNLIAVSTAIQDWLTSRIAMELMKQGAMMTVLKT 337
+ FV W E+Y L++ES L+ + AI+ +L S ++Q + T L
Sbjct: 320 SPDQAFVHQWRHLRHTKEQYTLRYESNYLMELGNAIE-YLMSFAVSVAIQQTLLETALAG 378
Query: 338 LLAALAWPATLVFAADLIDSKWTIAVDRSDKAGKLLAEVLMQGLQGYRPVTLIGYSLGAR 397
L++A+AWP L+ + ++D+ W + V R+ + G+ LAEVL+ G RP+TLIG+SLGAR
Sbjct: 379 LVSAVAWPVALMSVSSVLDNPWNVCVSRAAEVGEQLAEVLLSRSHGKRPITLIGFSLGAR 438
Query: 398 VIFKCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYATNDWTLAI 457
VIF CL +++ + GI+E V+LLGAP++ + W V +V+GR IN Y DW L
Sbjct: 439 VIFHCLLTMSKRSESVGIIEDVILLGAPVTASPKEWSKVCTVVSGRVINGYCETDWLLRF 498
Query: 458 AFRASLLSQGLAGIQPI---NGLGIENIDVTHLIEGHSSY 494
+R +AG PI N I N +++H+++GH Y
Sbjct: 499 LYRTMSAQFRIAGTGPIDNRNSKKIYNYNLSHIVKGHMDY 538
>sp|Q5TGY1|TMCO4_HUMAN Transmembrane and coiled-coil domain-containing protein 4 OS=Homo
sapiens GN=TMCO4 PE=2 SV=1
Length = 634
Score = 214 bits (545), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 147/396 (37%), Positives = 236/396 (59%), Gaps = 22/396 (5%)
Query: 103 YDSRHRVALRLLATWLDIKWIKMEAVEMMVASSAMAVRKAEASKEEEATSSESKWAKWKR 162
YD+R RV + + + L + +++ +E M S +++ E+ E + + KWKR
Sbjct: 130 YDARARVLVCHMTSLLQVPLEELDVLEEMFLESLKEIKEEESEMAEASRKKKENRRKWKR 189
Query: 163 GGIIGAAALTGGTLMAITGGLAAPAIAAGFSALAPTLGTLIPVIGASGFAAAASAAGTVA 222
+IG A + GGT++ +TGGLAAP +AAG + + +A A+A G+ A
Sbjct: 190 YLLIGLATVGGGTVIGVTGGLAAPLVAAGAATII--------------GSAGAAALGSAA 235
Query: 223 GSVAVAASFGAAGAGLTGSKMARRIGSVDEFEFKAIGENQNQGRLAVEILISGVVFDQE- 281
G + + FGAAGAGLTG KM +R+G+++EF F + E + +L + I ++G + +
Sbjct: 236 GIAIMTSLFGAAGAGLTGYKMKKRVGAIEEFTFLPLTEGR---QLHITIAVTGWLASGKY 292
Query: 282 -DFVRPWEGQNDNMERYVLQWESKNLIAVSTAIQDWLTSRIAMELMKQGAMMTVLKTLLA 340
F PW + E+Y L WE+K L+ + A++ L S +A + ++ TVL ++A
Sbjct: 293 RTFSAPWAALAHSREQYCLAWEAKYLMELGNALETIL-SGLANMVAQEALKYTVLSGIVA 351
Query: 341 ALAWPATLVFAADLIDSKWTIAVDRSDKAGKLLAEVLMQGLQGYRPVTLIGYSLGARVIF 400
AL WPA+L+ A++ID+ W + + RS + GK LA +L+ QG RPVTLIG+SLGARVI+
Sbjct: 352 ALTWPASLLSVANVIDNPWGVCLHRSAEVGKHLAHILLSRQQGRRPVTLIGFSLGARVIY 411
Query: 401 KCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYATNDWTLAIAFR 460
CL+ +A+ + GI+E V+LLGAP+ + ++WE RK+V+GR IN Y DW L+ +R
Sbjct: 412 FCLQEMAQEKDCQGIIEDVILLGAPVEGEAKHWEPFRKVVSGRIINGYCRGDWLLSFVYR 471
Query: 461 ASLLSQGLAGIQPI--NGLGIENIDVTHLIEGHSSY 494
S + +AG+QP+ +EN+D+T ++ GH Y
Sbjct: 472 TSSVQLRVAGLQPVLLQDRRVENVDLTSVVSGHLDY 507
>sp|Q499U8|TMCO4_RAT Transmembrane and coiled-coil domain-containing protein 4 OS=Rattus
norvegicus GN=Tmco4 PE=2 SV=1
Length = 631
Score = 214 bits (544), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 189/309 (61%), Gaps = 12/309 (3%)
Query: 205 VIGASGFAAAASAAGTVAGSVAVAASFGAAGAGLTGSKMARRIGSVDEFEFKAIGENQNQ 264
+IG++G A+A G+VAG + + FGAAGAGLTG KM +R+G+++EF F + + +
Sbjct: 219 IIGSAG----AAALGSVAGIAVMTSLFGAAGAGLTGYKMKKRVGAIEEFMFLPLTDGK-- 272
Query: 265 GRLAVEILISGVVFD--QEDFVRPWEGQNDNMERYVLQWESKNLIAVSTAIQDWLTSRIA 322
+L + I I+G + F PW + E+Y L WE+K L+ + A++ L S +A
Sbjct: 273 -QLHITIAITGWLGSGRYRTFNAPWMALARSQEQYCLAWEAKYLMELGNALETIL-SGLA 330
Query: 323 MELMKQGAMMTVLKTLLAALAWPATLVFAADLIDSKWTIAVDRSDKAGKLLAEVLMQGLQ 382
+ ++ TVL ++AAL PA+L+ A++ID+ W + + RS + GK LA +L+ Q
Sbjct: 331 NMVAQEALKYTVLSGIVAALTLPASLLSVANVIDNPWGVCLHRSAEVGKHLAHILLSRQQ 390
Query: 383 GYRPVTLIGYSLGARVIFKCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAG 442
G RPVTLIG+SLGARVI+ CL+ +A+ + GI+E VVLLGAP+ + WE R +V+G
Sbjct: 391 GRRPVTLIGFSLGARVIYFCLQEMAQEQDCQGIIEDVVLLGAPVEGDPKYWEPFRNVVSG 450
Query: 443 RFINCYATNDWTLAIAFRASLLSQGLAGIQPI--NGLGIENIDVTHLIEGHSSYLWASQL 500
R IN Y DW L+ +R S + +AG+QP+ +EN+D++ ++ GH Y +
Sbjct: 451 RIINGYCRGDWLLSFVYRTSSVQLRVAGLQPVLLQDRRMENVDLSSVVNGHLDYAKKMDV 510
Query: 501 ILERLELDT 509
IL+ + + T
Sbjct: 511 ILKAVGIRT 519
>sp|O14244|YELD_SCHPO Uncharacterized membrane protein C6F6.13c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC6F6.13c PE=3 SV=1
Length = 778
Score = 187 bits (474), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 142/414 (34%), Positives = 213/414 (51%), Gaps = 32/414 (7%)
Query: 103 YDSRHRVALRLLATWLDIKWIKMEAVEMMVASSAMAVRKAEASKEEEATSSES------- 155
YD R R L + LDI + E + + + + + E EA SS +
Sbjct: 291 YDCRSRSLLMAVGEVLDINEFDVAKFEKHIVETI----QIDDTGELEAGSSANTEAVMKL 346
Query: 156 --KWAKWKRGGIIGAAALTGGTLMAITGGLAAPAIAAGFSALAPTLGTLIPVIGASGF-A 212
K ++ K+ ++G A + GG ++ ++ GL AP I+AG A T+G + + SGF A
Sbjct: 347 RRKVSRRKKYILMGLAGIGGGLVIGLSSGLLAPIISAGIGAAFTTVG--LSGVATSGFLA 404
Query: 213 AAASAAGTVAGSVAVAASFGAAGAGLTGSKMARRIGSVDEFEFKAIGENQNQGRLAVEIL 272
SAA AG A G G MA R V FEF+ + Q R V +
Sbjct: 405 GGGSAALITAGGAISGAHIGTTG-------MAHRKADVKTFEFRPL---HAQRRANVIVT 454
Query: 273 ISGVVFDQEDFVRPWEGQNDNM--ERYVLQWESKNLIAVSTAIQDWLTSRIAMELMKQGA 330
+SG + +ED VR D + + Y + WE + ++A + + L + + + ++Q
Sbjct: 455 VSGWMLSKEDDVRLSFATLDPIVGDIYSVFWEPE-MLASAGQTMNILATEVVTQSLQQVL 513
Query: 331 MMTVLKTLLAALAWPATLVFAADLIDSKWTIAVDRSDKAGKLLAEVLMQGLQGYRPVTLI 390
TVL +L+ AL WP L LID+ W ++DR+ G+LLA++L G RPVTL+
Sbjct: 514 GSTVLVSLMGALQWPLILTKLGYLIDNPWNNSLDRAKATGQLLADMLCYRSLGVRPVTLV 573
Query: 391 GYSLGARVIFKCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYAT 450
GYSLGARVI+ CL L E + I+E V L G P+ K +W +V+GRF+N Y
Sbjct: 574 GYSLGARVIYYCLREL-EKKKEFSIIENVYLFGTPVIFKRTSWLKAASVVSGRFVNGYKK 632
Query: 451 NDWTLAIAFRASLLSQG-LAGIQPINGL-GIENIDVTHLIEGHSSYLWASQLIL 502
NDW L FRA+ G +AG++ I+ + GIENIDVT+L+ GH +Y + ++L
Sbjct: 633 NDWILGYLFRATSGGIGRVAGLRQIDCIPGIENIDVTNLVSGHLAYRESMPILL 686
>sp|P43564|YFD4_YEAST Uncharacterized membrane protein YFL034W OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YFL034W PE=1
SV=2
Length = 1073
Score = 176 bits (447), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 139/462 (30%), Positives = 230/462 (49%), Gaps = 43/462 (9%)
Query: 55 GSKFDERPIEEEAVLSYQRKVTVLYELLSACLADIPQHDKKCTRQRTGYDSRHRVALRLL 114
G D ++ + L+ T++ +L CL Q + YDSR R L
Sbjct: 443 GKVLDPENVKSQDKLNIDVAWTIICDLFLICL------------QSSTYDSRSRTLLINF 490
Query: 115 ATWLDIKWIKMEAVEMMVASSAMAVRKAEAS--KEEEATSSESKWAKWKRGGIIGAAALT 172
A L++ +++ E V S + E E++ + + + K+ + A +
Sbjct: 491 AKVLNMTSLEICEFERRVTDSLDMEQSTEDQVWDEQDHMRNRRRSKRRKKMAYVALAMVG 550
Query: 173 GGTLMAITGGLAAPAIAAGFSALAPTLGTLIPVIGASGFAAAASAAGTVAGSVAVAASFG 232
G ++ ++GGL AP I G +A T+G + GA+ F V G+ VA S
Sbjct: 551 GSLVLGLSGGLLAPVIGGGIAAGLSTIG----ITGATSFLTG------VGGTTVVAVSST 600
Query: 233 AAGAGLTGSKMARRIGSVDEFEFKAIGENQNQGRLAVEILISGVVFDQEDFVR------- 285
A GA + M++R+GSV FEF+ + N+ R+ + + +SG + ED VR
Sbjct: 601 AIGANIGARGMSKRMGSVRTFEFRPLHNNR---RVNLILTVSGWMVGNEDDVRLPFSTVD 657
Query: 286 PWEGQNDNMERYVLQWESKNLIAVSTAIQDWLTSRIAMELMKQGAMMTVLKTLLAALAWP 345
P EG + Y L WE + L ++ + + + I ++Q TVL L++++ WP
Sbjct: 658 PVEG-----DLYSLYWEPEMLKSIGQTVS-IVATEIFTTSLQQILGATVLTALISSIQWP 711
Query: 346 ATLVFAADLIDSKWTIAVDRSDKAGKLLAEVLMQGLQGYRPVTLIGYSLGARVIFKCLEN 405
L ++D+ W +++DR+ AGK+LA+ L+ G RP+TL+G+S+GARVIF CL
Sbjct: 712 MALSKLGYILDNPWNVSLDRAWSAGKILADTLIARNLGARPITLVGFSIGARVIFSCLIE 771
Query: 406 LAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYATNDWTLAIAFRASLLS 465
L + + G++E V L G P +K + R +V+GRF+N Y+ DW LA FRA+
Sbjct: 772 LCKKKA-LGLIENVYLFGTPAVMKKEQLVMARSVVSGRFVNGYSDKDWFLAYLFRAAAGG 830
Query: 466 -QGLAGIQPINGL-GIENIDVTHLIEGHSSYLWASQLILERL 505
+ GI I + GIENI+ T ++GH +Y + +L+R+
Sbjct: 831 FSAVMGISTIENVEGIENINCTEFVDGHLNYRKSMPKLLKRI 872
>sp|Q9US10|YK68_SCHPO Uncharacterized membrane protein C6F6.13c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC607.08c PE=3 SV=1
Length = 579
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 116/340 (34%), Positives = 178/340 (52%), Gaps = 23/340 (6%)
Query: 180 TGGLAAPAIAAGFSALAPTLGTLIPVIGASGFAAAASAAGTVAGSVAVAASFGAAGAGLT 239
TGGLAAP +AAG LGTL +G A + + + A FG GA ++
Sbjct: 189 TGGLAAPFVAAG-------LGTLFAGLGLGTMIGATYLGTLITSAPMITALFGGFGAKMS 241
Query: 240 GSKMARRIGSVDEFEFKAIGENQNQGRLAVEILISGVVFDQEDFVRPWE----GQNDNM- 294
+M + +FEF + Q L V I ISG + D + W+ G
Sbjct: 242 MQQMGDVSKGLTDFEFIPLSV---QSHLPVTIGISGWLGDYNEVDAAWKSLTVGDKSYYW 298
Query: 295 -ERYVLQWESKNLIAVSTAIQDWLTSRIAMELMKQGAMMTVLKTLLAALAWPATLVFAAD 353
+ Y L++E + L+ + ++ L S + + T+L L AAL WP +L+ +
Sbjct: 299 GDIYALKFEVEALVDLGKSLSRILFSAGLGWVKGEVISRTILAPLAAAL-WPLSLLKVGN 357
Query: 354 LIDSKWTIAVDRSDKAGKLLAEVLMQGLQGYRPVTLIGYSLGARVIFKCLENLAE-NECN 412
++ + W IA + S KAG+ LA L QG RPVTLIG+SLGAR I +CL +LA+ E N
Sbjct: 358 ILGNSWRIAFNLSIKAGEALANALCVRAQGMRPVTLIGFSLGARTILECLLHLADRGETN 417
Query: 413 AGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYATNDWTLAIAFRASLLSQGLAGIQ 472
+VE V+++GAP+ + W +R +VAGRF+N Y+ +D+ L + +R + AG+
Sbjct: 418 --LVENVIVMGAPMPTDAKLWLKMRCVVAGRFVNVYSASDYVLQLVYRVNSAQSTAAGLG 475
Query: 473 PI--NGLGIENIDVTHLIEGHSSYLW-ASQLILERLELDT 509
P+ + +EN+DV L+EGH Y W ++++ ERL D
Sbjct: 476 PVSLDSNTLENVDVGDLVEGHLQYRWLVAKILKERLGYDN 515
>sp|A6BLY7|K1C28_MOUSE Keratin, type I cytoskeletal 28 OS=Mus musculus GN=Krt28 PE=1 SV=1
Length = 462
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 48/117 (41%), Gaps = 23/117 (19%)
Query: 200 GTLIPVIGASGFAAAASAAGTVAGSVAVAASFGAAGAGLTGSKMARRIGSVDEFEF---- 255
G+L P G +GFA ++ A G+VAGS A G G+ GS +G+V F
Sbjct: 17 GSLRPPSGGAGFAGSSVAGGSVAGSGFSWALGGTLGSAPGGSHATGALGNVSGVCFIGSE 76
Query: 256 --------KAIGENQNQGRLAVEILISGVVFDQEDFVRPWEGQNDNMERYVLQWESK 304
K +N N RLA + D V+ E N +ER + W K
Sbjct: 77 GGLLSGNEKVTMQNLNN-RLASYL----------DNVKALEEANSELERKIKTWHEK 122
>sp|Q08787|SRFAC_BACSU Surfactin synthase subunit 3 OS=Bacillus subtilis (strain 168)
GN=srfAC PE=1 SV=2
Length = 1275
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 13/80 (16%)
Query: 345 PATLVFAADLIDSKWTIAVDRSDKAGKLLAEVLMQGLQGYRPVTLIGYSLGARVIFKCLE 404
P+ + A D I+ + DR D+ L+ Q LQ P+TL GYS G + F+ +
Sbjct: 1082 PSYKLCAFDFIEEE-----DRLDRYADLI-----QKLQPEGPLTLFGYSAGCSLAFEAAK 1131
Query: 405 NLAENECNAGIVERVVLLGA 424
L E IV+R++++ +
Sbjct: 1132 KLEE---QGRIVQRIIMVDS 1148
>sp|B7KC96|UVRB_CYAP7 UvrABC system protein B OS=Cyanothece sp. (strain PCC 7424) GN=uvrB
PE=3 SV=1
Length = 665
Score = 33.1 bits (74), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 262 QNQGRLAVEILISGVVFDQEDFVRPWEGQNDNMERYVLQW-ESKNLIAVSTAIQDWLTSR 320
Q+QG++ +I+ V D E FVRP EGQ D++ + Q + K + ++T LT R
Sbjct: 401 QSQGQVIEQIIRPTGVLDPEIFVRPTEGQVDDLLGEIKQRIKRKERVLITT-----LTKR 455
Query: 321 IAMELMK 327
+A +L +
Sbjct: 456 MAEDLTE 462
>sp|C5D9C1|DXR_GEOSW 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacillus sp.
(strain WCH70) GN=dxr PE=3 SV=1
Length = 381
Score = 32.7 bits (73), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 96/218 (44%), Gaps = 40/218 (18%)
Query: 289 GQNDNMERYVLQWESKNLIAVSTA-----IQDWLTSRIAMELMKQGAMMTVLKTLLAALA 343
G+N +M R +++ + L+AV+ A ++ ++ + ++G L+ A A
Sbjct: 36 GKNVDMARAIIEEFAPRLVAVAEADAYEKLRSEYAGKVKIVFGEEG--------LIEAAA 87
Query: 344 WPATLVFAADLIDSKWTIAVDRSDKAGKLLA----EVLMQGLQGY--------RPVTLIG 391
+P T + ++ S + R+ +AGK +A E L+ G+ V+L+
Sbjct: 88 FPETDIVVTAVVGSVGLVPTLRAIEAGKTIALANKETLVTA--GHIVTAAAKKHGVSLLP 145
Query: 392 YSLGARVIFKCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYATN 451
IF+CL+ N VE+++L + S +D+ E ++ + +
Sbjct: 146 VDSEHSAIFQCLQGEKRNR-----VEKIILTASGGSFRDKTREELKNVTVEEALR---HP 197
Query: 452 DWTLAIAF---RASLLSQGLAGIQP--INGLGIENIDV 484
+W++ A+++++GL I+ + L E IDV
Sbjct: 198 NWSMGAKITIDSATMMNKGLEVIEAHWLFELPYEQIDV 235
>sp|B1XXP1|PYRF_LEPCP Orotidine 5'-phosphate decarboxylase OS=Leptothrix cholodnii
(strain ATCC 51168 / LMG 8142 / SP-6) GN=pyrF PE=3 SV=1
Length = 284
Score = 32.3 bits (72), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 177 MAITGGLAAPAIAAGFSALAPTLGTLIPVIGASGFAAAAS--------AAGTVAGSVAVA 228
+A+ G PA A LAPTL LIP +GA G A A+ A+G G + V
Sbjct: 187 LALVVGATYPAEIARVRELAPTLPLLIPGVGAQGGDAQATVQAGLVCDASGASTGPIIVN 246
Query: 229 ASFGA--AGAGLTGSKMARRI 247
+S A AG ++ ARR+
Sbjct: 247 SSRAVLYASAGDDFAQAARRV 267
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,339,828
Number of Sequences: 539616
Number of extensions: 7121809
Number of successful extensions: 28583
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 111
Number of HSP's that attempted gapping in prelim test: 27953
Number of HSP's gapped (non-prelim): 613
length of query: 518
length of database: 191,569,459
effective HSP length: 122
effective length of query: 396
effective length of database: 125,736,307
effective search space: 49791577572
effective search space used: 49791577572
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)