BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010089
(518 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 25/116 (21%)
Query: 167 LEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGIXXXXXXXXXXXXXTKVRGLPQE 226
L YN++ ++ F LPSLR L+L N+ R P+
Sbjct: 255 LSYNNLHDVGNGSFSYLPSLRYLSLEYNNI-----------------------QRLSPRS 291
Query: 227 LKALVNLRYLNLD--YTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEG 280
L NLRYL+L +T + + P SF L+ L L+ N+ P +
Sbjct: 292 FYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSN 347
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 164 TLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 198
+LLL +NH+ I+ F +P+LR L+LS NH T
Sbjct: 68 SLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 37/182 (20%)
Query: 232 NLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLM 291
NLRYL+L + + + E L FS LQ L +L +NH + + N D A+ L
Sbjct: 89 NLRYLDLSSNH----LHTLDEFL---FSDLQALEVLLLYNNHIVVVDR-NAFEDMAQ-LQ 139
Query: 292 KEIHCLEQLNLIALSLRGSRGVENFLKFPKL------QNITQALHIKDCNSLPL---NLL 342
K Q++ + L +++ K PKL N + L + D LP N L
Sbjct: 140 KLYLSQNQISRFPVEL-----IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194
Query: 343 HLAN------MEHLQLFSIWD----SNLEDWNVDC----AGEVQKMLKLHFVNCSNVKDL 388
+L N + QLFS W S++ D+ D + ++ + L F NCS K+
Sbjct: 195 YLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKES 254
Query: 389 TW 390
W
Sbjct: 255 AW 256
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 135 ANEIEEEEKFLVRAGVGLTDAPKIEEWEGTLLLEYNHIEEITESFFQSLPSLRVLNLSVN 194
+ +E+ L G+ ++ L L N I ++ F SL L LNL+VN
Sbjct: 21 GTTVNCQERSLASVPAGIPTTTQV------LHLYINQITKLEPGVFDSLTQLTYLNLAVN 74
Query: 195 HYLTELPVGI 204
LT LPVG+
Sbjct: 75 Q-LTALPVGV 83
>pdb|3EDV|A Chain A, Crystal Structure Of Repeats 14-16 Of Beta2-Spectrin
pdb|3EDV|B Chain B, Crystal Structure Of Repeats 14-16 Of Beta2-Spectrin
Length = 323
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 14/125 (11%)
Query: 22 KEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLFPEDSEI 81
K+ PEE R + T E + + L L D R Y +D +
Sbjct: 134 KKLPEELGRDQNTVETLQRMHTTFEHDIQA-LGTQVRQLQEDAARLQAAYAGDKADDIQK 192
Query: 82 RKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEEGGDHVKMHDMIRDMALWIAN---EI 138
R+ +++ W+S LLD+ R L + GD + M+RD+ LW+ + +I
Sbjct: 193 RENEVLEAWKS--LLDACES--------RRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQI 242
Query: 139 EEEEK 143
E +EK
Sbjct: 243 EAQEK 247
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
Length = 545
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 78/177 (44%), Gaps = 9/177 (5%)
Query: 27 EWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLFPEDSEIRKTDL 86
E R+ I+ I+ ++ + K L+ L L ND L ++ +E+R
Sbjct: 133 EARKIIDEIAEKSTDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAV--AEVRDGKT 190
Query: 87 IVYWESEGLLDSIGGWDVLGALVRACLLEEGGDHVKMHDMIRDMALWIANEIEEEEKFLV 146
IV + + GG + ++++ H KM D++++ + + + E +K +
Sbjct: 191 IVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEI 250
Query: 147 RAGVGLTDAPKIEEWEGTLLLEYNHIEEITESFFQSLPSL----RVLNLSVNHYLTE 199
A V ++D KI+++ L E N +++ E +S ++ + ++ HYL +
Sbjct: 251 EAKVQISDPSKIQDF---LNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAK 304
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 167 LEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI 204
L YNHI + + F LP+L+ L L N L +P GI
Sbjct: 354 LSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGI 390
>pdb|1Y9M|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
Awamori In Spacegroup P212121
pdb|1Y9G|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
Awamori Complexed With Fructose
pdb|1Y4W|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
Awamori In Spacegroup P21
Length = 518
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 434 SELELLVISNASNLKRIYRDPLPFPHLERIGISECPKLKKLPLNSSSA 481
+EL L I + NLK P+ + G+ ECP L KLPL+S ++
Sbjct: 189 AELHKLAIYTSDNLKDWKLVSEFGPYNAQGGVWECPGLVKLPLDSGNS 236
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 324 NITQALHIKDCNSLPLN---LLHLANMEHLQLFSIWDSNLEDWNVD 366
N QAL KDC + +N L+H E +Q F + S ++ W++D
Sbjct: 379 NFFQALDFKDCADIVINDLSLIHQLPREEIQTF-CYPSMIQKWSLD 423
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 8/115 (6%)
Query: 125 DMIRDMALWIANEIEEEEKFLVRAGVGLTDAPKIEEWEGTLLLEYNHIEEITESFFQSLP 184
D D LW A ++ + F + A + D + L L N + E+ ++L
Sbjct: 218 DSKYDDQLWHALDLSNLQIFNISANIFKYD------FLTRLYLNGNSLTELPAEI-KNLS 270
Query: 185 SLRVLNLSVNHYLTELPVGIXXXXXXXXXXXXXTKVRGLPQELKALVNLRYLNLD 239
+LRVL+LS N LT LP + V LP E L NL++L ++
Sbjct: 271 NLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE 324
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 167 LEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 198
L YN++ ++ S+F+ L SL LNL N Y T
Sbjct: 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,275,319
Number of Sequences: 62578
Number of extensions: 617224
Number of successful extensions: 1505
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1480
Number of HSP's gapped (non-prelim): 37
length of query: 518
length of database: 14,973,337
effective HSP length: 103
effective length of query: 415
effective length of database: 8,527,803
effective search space: 3539038245
effective search space used: 3539038245
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)