Query 010089
Match_columns 518
No_of_seqs 361 out of 3035
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 20:55:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 8.2E-61 1.8E-65 503.8 19.1 485 1-509 348-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.9E-44 4.2E-49 400.1 24.5 432 1-476 381-911 (1153)
3 PLN00113 leucine-rich repeat r 99.9 4.3E-21 9.2E-26 213.8 15.2 293 165-478 145-448 (968)
4 PLN00113 leucine-rich repeat r 99.9 5.1E-21 1.1E-25 213.1 15.1 293 165-480 98-402 (968)
5 PLN03210 Resistant to P. syrin 99.8 1.3E-19 2.7E-24 202.4 19.1 284 165-473 616-945 (1153)
6 KOG0444 Cytoskeletal regulator 99.8 3.1E-21 6.7E-26 186.7 0.4 308 167-502 85-405 (1255)
7 KOG4194 Membrane glycoprotein 99.7 2.6E-18 5.6E-23 165.5 7.7 299 158-468 76-426 (873)
8 KOG0444 Cytoskeletal regulator 99.7 1.5E-18 3.2E-23 168.4 -2.4 246 165-452 131-380 (1255)
9 PF00931 NB-ARC: NB-ARC domain 99.7 7.6E-18 1.6E-22 160.9 0.6 97 1-98 188-284 (287)
10 KOG4194 Membrane glycoprotein 99.7 3.9E-18 8.4E-23 164.3 -1.6 303 165-496 154-484 (873)
11 KOG0472 Leucine-rich repeat pr 99.6 4.9E-18 1.1E-22 156.7 -3.8 98 165-271 211-309 (565)
12 KOG0472 Leucine-rich repeat pr 99.6 1.3E-17 2.8E-22 153.9 -5.7 249 165-482 50-298 (565)
13 PRK15387 E3 ubiquitin-protein 99.5 8.3E-13 1.8E-17 138.0 15.2 230 165-469 227-456 (788)
14 KOG4237 Extracellular matrix p 99.4 1.1E-14 2.4E-19 134.5 -0.8 252 143-412 49-338 (498)
15 PRK15370 E3 ubiquitin-protein 99.4 7.6E-13 1.6E-17 139.1 12.7 92 165-271 183-274 (754)
16 PRK15387 E3 ubiquitin-protein 99.4 1.5E-12 3.2E-17 136.2 12.7 248 165-491 206-453 (788)
17 KOG0618 Serine/threonine phosp 99.4 1.8E-14 3.8E-19 146.5 -2.5 234 184-446 241-488 (1081)
18 PRK15370 E3 ubiquitin-protein 99.4 7.2E-13 1.6E-17 139.2 9.3 75 185-271 179-253 (754)
19 KOG0617 Ras suppressor protein 99.4 5.1E-15 1.1E-19 121.2 -5.6 100 165-269 38-137 (264)
20 KOG0618 Serine/threonine phosp 99.4 1.7E-13 3.7E-18 139.5 1.7 92 370-480 239-331 (1081)
21 KOG0617 Ras suppressor protein 99.3 5.2E-14 1.1E-18 115.4 -3.4 161 180-389 29-189 (264)
22 KOG4658 Apoptotic ATPase [Sign 99.3 2.9E-12 6.3E-17 136.9 4.9 289 163-494 574-878 (889)
23 cd00116 LRR_RI Leucine-rich re 99.2 5.9E-12 1.3E-16 122.3 2.8 87 180-271 19-120 (319)
24 cd00116 LRR_RI Leucine-rich re 99.0 1.5E-10 3.2E-15 112.5 4.0 129 165-307 28-174 (319)
25 KOG4237 Extracellular matrix p 98.9 4.9E-10 1.1E-14 104.2 1.7 261 165-466 51-354 (498)
26 KOG3207 Beta-tubulin folding c 98.8 1.4E-09 3E-14 102.6 3.2 204 181-404 118-335 (505)
27 PF14580 LRR_9: Leucine-rich r 98.8 8.3E-09 1.8E-13 88.7 5.2 100 165-271 24-125 (175)
28 COG4886 Leucine-rich repeat (L 98.6 4.5E-08 9.7E-13 98.0 6.6 189 166-406 99-288 (394)
29 PF14580 LRR_9: Leucine-rich r 98.6 2.2E-08 4.8E-13 86.0 3.7 96 168-272 5-101 (175)
30 KOG4341 F-box protein containi 98.6 2.9E-09 6.2E-14 100.0 -3.6 142 322-473 292-441 (483)
31 KOG1259 Nischarin, modulator o 98.6 1.6E-08 3.6E-13 90.9 1.3 124 324-469 284-410 (490)
32 KOG2120 SCF ubiquitin ligase, 98.6 2.5E-09 5.3E-14 96.0 -4.2 83 348-444 286-373 (419)
33 KOG3207 Beta-tubulin folding c 98.5 2E-08 4.3E-13 95.0 -0.2 191 198-406 111-312 (505)
34 PLN03150 hypothetical protein; 98.5 3.1E-07 6.6E-12 96.6 8.4 102 165-269 423-525 (623)
35 KOG1259 Nischarin, modulator o 98.5 3.1E-08 6.7E-13 89.2 0.3 131 294-445 280-410 (490)
36 COG4886 Leucine-rich repeat (L 98.5 1.1E-07 2.3E-12 95.3 4.1 172 165-388 121-293 (394)
37 KOG0532 Leucine-rich repeat (L 98.5 9.3E-09 2E-13 100.2 -3.4 187 165-382 80-270 (722)
38 KOG4341 F-box protein containi 98.5 1E-08 2.3E-13 96.3 -3.1 284 185-496 139-442 (483)
39 PF13855 LRR_8: Leucine rich r 98.4 2.6E-07 5.6E-12 65.0 4.0 56 185-241 2-59 (61)
40 KOG2120 SCF ubiquitin ligase, 98.4 2.9E-08 6.3E-13 89.3 -2.2 182 209-407 186-375 (419)
41 PF13855 LRR_8: Leucine rich r 98.4 2.8E-07 6.1E-12 64.9 3.2 59 208-270 1-60 (61)
42 KOG0532 Leucine-rich repeat (L 98.3 4.3E-08 9.2E-13 95.7 -3.7 215 161-405 51-270 (722)
43 KOG1909 Ran GTPase-activating 98.1 4.2E-07 9E-12 83.9 -0.4 248 180-468 26-308 (382)
44 KOG1909 Ran GTPase-activating 98.1 1.5E-06 3.2E-11 80.3 3.1 230 165-444 35-308 (382)
45 PF12799 LRR_4: Leucine Rich r 98.1 4.1E-06 8.8E-11 54.0 4.0 34 209-242 2-35 (44)
46 PF12799 LRR_4: Leucine Rich r 98.1 4E-06 8.6E-11 54.0 3.6 41 184-225 1-41 (44)
47 PLN03150 hypothetical protein; 98.1 5.9E-06 1.3E-10 87.0 6.8 83 185-271 419-502 (623)
48 PRK15386 type III secretion pr 98.0 4.8E-05 1.1E-09 73.8 10.1 73 180-268 48-121 (426)
49 KOG0531 Protein phosphatase 1, 97.9 2.5E-06 5.5E-11 85.6 0.4 98 165-271 77-174 (414)
50 KOG0531 Protein phosphatase 1, 97.8 2.2E-06 4.8E-11 86.0 -2.3 106 181-310 69-174 (414)
51 KOG2982 Uncharacterized conser 97.8 1.1E-05 2.5E-10 73.0 1.8 62 206-271 69-133 (418)
52 PRK15386 type III secretion pr 97.7 7.4E-05 1.6E-09 72.5 6.1 69 324-404 52-121 (426)
53 KOG1859 Leucine-rich repeat pr 97.7 1.9E-06 4.1E-11 86.9 -4.9 105 158-271 160-266 (1096)
54 KOG2982 Uncharacterized conser 97.6 9.1E-05 2E-09 67.3 5.1 62 342-403 218-287 (418)
55 KOG3665 ZYG-1-like serine/thre 97.5 3.4E-05 7.5E-10 81.2 1.8 85 182-270 146-231 (699)
56 KOG4579 Leucine-rich repeat (L 97.5 2.6E-05 5.6E-10 62.5 -0.0 84 165-253 58-141 (177)
57 KOG1859 Leucine-rich repeat pr 97.4 6.9E-06 1.5E-10 83.0 -4.7 126 185-335 165-290 (1096)
58 KOG1947 Leucine rich repeat pr 97.3 4.4E-05 9.5E-10 78.7 -0.5 88 180-270 184-280 (482)
59 KOG3665 ZYG-1-like serine/thre 97.2 0.00013 2.8E-09 76.9 1.3 141 322-474 146-291 (699)
60 KOG1947 Leucine rich repeat pr 96.9 0.00011 2.3E-09 75.8 -2.8 64 207-270 187-254 (482)
61 KOG4579 Leucine-rich repeat (L 96.8 0.00022 4.7E-09 57.3 -0.9 102 165-272 32-136 (177)
62 KOG1644 U2-associated snRNP A' 96.7 0.0031 6.8E-08 54.3 5.1 106 325-444 43-150 (233)
63 KOG1644 U2-associated snRNP A' 96.5 0.003 6.4E-08 54.5 4.0 103 165-271 47-152 (233)
64 PF00560 LRR_1: Leucine Rich R 96.5 0.0013 2.8E-08 35.2 1.1 20 209-228 1-20 (22)
65 KOG2739 Leucine-rich acidic nu 96.4 0.0032 6.9E-08 56.6 3.6 85 183-272 42-129 (260)
66 KOG2123 Uncharacterized conser 96.2 0.00053 1.2E-08 61.8 -2.4 56 209-271 20-75 (388)
67 KOG2739 Leucine-rich acidic nu 96.0 0.0039 8.4E-08 56.1 2.1 104 165-272 48-156 (260)
68 KOG3864 Uncharacterized conser 95.7 0.0012 2.6E-08 56.8 -2.3 65 369-447 122-189 (221)
69 KOG2123 Uncharacterized conser 95.6 0.0019 4E-08 58.4 -1.5 96 165-267 24-125 (388)
70 KOG3864 Uncharacterized conser 95.4 0.0018 4E-08 55.8 -2.1 86 326-411 103-192 (221)
71 COG5238 RNA1 Ran GTPase-activa 95.2 0.02 4.2E-07 51.9 3.5 86 183-271 29-132 (388)
72 PF00560 LRR_1: Leucine Rich R 95.1 0.0098 2.1E-07 31.7 0.9 22 185-207 1-22 (22)
73 PF13504 LRR_7: Leucine rich r 94.9 0.019 4.1E-07 28.3 1.5 16 209-224 2-17 (17)
74 PF13504 LRR_7: Leucine rich r 94.3 0.025 5.5E-07 27.9 1.1 17 458-475 1-17 (17)
75 COG5238 RNA1 Ran GTPase-activa 92.3 0.26 5.6E-06 44.9 5.1 78 165-243 35-132 (388)
76 smart00370 LRR Leucine-rich re 91.6 0.17 3.6E-06 28.1 2.1 19 208-226 2-20 (26)
77 smart00369 LRR_TYP Leucine-ric 91.6 0.17 3.6E-06 28.1 2.1 19 208-226 2-20 (26)
78 KOG0473 Leucine-rich repeat pr 91.5 0.012 2.6E-07 52.0 -4.0 76 165-242 47-122 (326)
79 KOG0473 Leucine-rich repeat pr 91.0 0.0077 1.7E-07 53.1 -5.7 92 174-271 32-123 (326)
80 PF13306 LRR_5: Leucine rich r 87.9 1.2 2.5E-05 36.2 5.3 87 172-267 23-111 (129)
81 PF13306 LRR_5: Leucine rich r 87.7 1.1 2.4E-05 36.4 5.0 86 175-268 3-90 (129)
82 smart00367 LRR_CC Leucine-rich 86.8 0.5 1.1E-05 26.2 1.6 17 457-473 1-17 (26)
83 PRK04841 transcriptional regul 83.1 3.6 7.8E-05 46.2 7.8 117 1-135 211-332 (903)
84 smart00364 LRR_BAC Leucine-ric 78.2 1.4 3E-05 24.4 1.2 18 208-225 2-19 (26)
85 smart00365 LRR_SD22 Leucine-ri 64.5 5.4 0.00012 22.1 1.6 15 208-222 2-16 (26)
86 PF13516 LRR_6: Leucine Rich r 63.8 3 6.4E-05 22.4 0.4 10 232-241 3-12 (24)
87 KOG4308 LRR-containing protein 52.2 0.66 1.4E-05 47.2 -6.1 106 165-271 92-216 (478)
88 smart00368 LRR_RI Leucine rich 48.1 13 0.00029 20.8 1.4 13 209-221 3-15 (28)
89 PF07725 LRR_3: Leucine Rich R 22.8 43 0.00092 17.3 0.6 16 210-225 2-17 (20)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.2e-61 Score=503.83 Aligned_cols=485 Identities=40% Similarity=0.707 Sum_probs=390.5
Q ss_pred CcccCCCCchHHHHHHHHhcCCCChhHHHHHHHHHhcc-CCcccchHHHHHHHHhhhcCCCCchhhhhHhhhhcccCCCC
Q 010089 1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTS-ASKFEDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLFPEDS 79 (518)
Q Consensus 1 I~~~c~GlPLai~~ig~~L~~~~~~~~W~~~l~~l~~~-~~~~~~~~~~i~~~L~~sY~~L~~~~lk~cfl~~a~fp~~~ 79 (518)
||++|+|+|||++|||+.|+.|++.++|+++.+.+.+. ..+.+++++.|+++|++|||+||. ++|.||+|||+||+||
T Consensus 348 v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~ 426 (889)
T KOG4658|consen 348 VAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE-ELKSCFLYCALFPEDY 426 (889)
T ss_pred HHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH-HHHHHHHhhccCCccc
Confidence 58999999999999999999999999999999999887 555667788999999999999997 9999999999999999
Q ss_pred ccChHHHHHHHHHhCCCccc--------chhHHHHHHHHhcccccCCC----c-eecchHHHHHHHHHHhhccccc-eeE
Q 010089 80 EIRKTDLIVYWESEGLLDSI--------GGWDVLGALVRACLLEEGGD----H-VKMHDMIRDMALWIANEIEEEE-KFL 145 (518)
Q Consensus 80 ~i~~~~Li~~Wia~g~i~~~--------~~~~~~~~L~~~sli~~~~~----~-~~mHdl~~dl~~~i~~~~~~~~-~~~ 145 (518)
+|++++||.+||||||+.+. +|++|+.+|+++++++.++. . |+|||+|||||.++|.+.+..+ ..+
T Consensus 427 ~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~i 506 (889)
T KOG4658|consen 427 EIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQI 506 (889)
T ss_pred ccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceE
Confidence 99999999999999999773 89999999999999998651 3 9999999999999999766543 466
Q ss_pred EecCcCCCCCCchhhhhhe--eeccccc------------------------ccccChhhhCCCCCCcEEEeecCCCcCc
Q 010089 146 VRAGVGLTDAPKIEEWEGT--LLLEYNH------------------------IEEITESFFQSLPSLRVLNLSVNHYLTE 199 (518)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~--l~l~~~~------------------------i~~~~~~~~~~l~~Lr~L~L~~~~~~~~ 199 (518)
+.++......|....|..+ +++.+|. +..++..+|..|+.||+||+++|....+
T Consensus 507 v~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~ 586 (889)
T KOG4658|consen 507 VSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK 586 (889)
T ss_pred EECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc
Confidence 6666555556666555443 3333332 3456667799999999999999989999
Q ss_pred cCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCCCcccccc
Q 010089 200 LPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEE 279 (518)
Q Consensus 200 lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 279 (518)
+|++|++|.|||||+++++.+..+|.++++|..|.+|++..+..+ ..+|. +...|++|++|.+.....
T Consensus 587 LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l---~~~~~-i~~~L~~Lr~L~l~~s~~-------- 654 (889)
T KOG4658|consen 587 LPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRL---ESIPG-ILLELQSLRVLRLPRSAL-------- 654 (889)
T ss_pred CChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccc---ccccc-hhhhcccccEEEeecccc--------
Confidence 999999999999999999999999999999999999999999876 55544 467799999999987652
Q ss_pred CCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhhccceeecccCCCCCccccccccccccceEEeccCc
Q 010089 280 GNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSN 359 (518)
Q Consensus 280 ~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 359 (518)
......+.++.+|++|+.+.+..........+.....+....+.+.+.++. ......++..+.+|+.|.+..|.
T Consensus 655 -----~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~-~~~~~~~~~~l~~L~~L~i~~~~ 728 (889)
T KOG4658|consen 655 -----SNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCS-KRTLISSLGSLGNLEELSILDCG 728 (889)
T ss_pred -----ccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccc-cceeecccccccCcceEEEEcCC
Confidence 135567788889999998888665543345566666777777777775543 34555788899999999999996
Q ss_pred CccccccCc-----cc-cccccEEEEecCCCCCCCcccccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccC
Q 010089 360 LEDWNVDCA-----GE-VQKMLKLHFVNCSNVKDLTWLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILF 433 (518)
Q Consensus 360 l~~~~~~~~-----~~-l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 433 (518)
..+....+. .. ++++.++.+.+|...+.+.|....|+|+.|.+..|..++++++...... .+......|
T Consensus 729 ~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~-----~l~~~i~~f 803 (889)
T KOG4658|consen 729 ISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALL-----ELKELILPF 803 (889)
T ss_pred CchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhh-----hcccEEecc
Confidence 654333331 22 6688888899999999999998999999999999999999877544332 121124567
Q ss_pred CCccee-eccCCccccccCCCCCCCCCcceEeccCCCCCcCCCCCCCCCC-C--cceEEEchhhhhccCccCchhhhhhh
Q 010089 434 SELELL-VISNASNLKRIYRDPLPFPHLERIGISECPKLKKLPLNSSSAK-G--RKIVIYGEKEWWEELQWEDQATQNAF 509 (518)
Q Consensus 434 ~~L~~L-~l~~~~~l~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~-~--~l~~~~~~~~~~~~~~~~~~~~~~~~ 509 (518)
.++..+ .+.+...+..+......++.|+.+.+..||++.++|....... . ......-+.+|.+..+|+++++...+
T Consensus 804 ~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 804 NKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred cccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence 777777 5777777777777667788899999999999999998866543 2 22333334678999999999998887
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.9e-44 Score=400.12 Aligned_cols=432 Identities=22% Similarity=0.312 Sum_probs=269.6
Q ss_pred CcccCCCCchHHHHHHHHhcCCCChhHHHHHHHHHhccCCcccchHHHHHHHHhhhcCCCCchhhhhHhhhhcccCCCCc
Q 010089 1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLFPEDSE 80 (518)
Q Consensus 1 I~~~c~GlPLai~~ig~~L~~~~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~~sY~~L~~~~lk~cfl~~a~fp~~~~ 80 (518)
||++|+|+||||+++|+.|++ ++.++|++++++++..+. ++|.++|++||++|+++..|.||+|+|+||.+..
T Consensus 381 iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~~~~------~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~ 453 (1153)
T PLN03210 381 VALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRNGLD------GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEK 453 (1153)
T ss_pred HHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHhCcc------HHHHHHHHHhhhccCccchhhhhheehhhcCCCC
Confidence 588999999999999999998 578999999999987543 3899999999999986359999999999999875
Q ss_pred cChHHHHHHHHHhCCCcccchhHHHHHHHHhcccccCCCceecchHHHHHHHHHHhhcccc---ceeEEecCcCCCCCCc
Q 010089 81 IRKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEEGGDHVKMHDMIRDMALWIANEIEEE---EKFLVRAGVGLTDAPK 157 (518)
Q Consensus 81 i~~~~Li~~Wia~g~i~~~~~~~~~~~L~~~sli~~~~~~~~mHdl~~dl~~~i~~~~~~~---~~~~~~~~~~~~~~~~ 157 (518)
++ .+..|+|.+.+.... .++.|+++|||+..+++++|||++|+||++++++++.+ ..+++...+.......
T Consensus 454 ~~---~v~~~l~~~~~~~~~---~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~ 527 (1153)
T PLN03210 454 VN---DIKLLLANSDLDVNI---GLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLED 527 (1153)
T ss_pred HH---HHHHHHHhcCCCchh---ChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHh
Confidence 43 467788877654433 49999999999987666999999999999999876422 1344433111000000
Q ss_pred hhhhhhe--eeccccccc--ccChhhhCCCCC-------------------------------CcEEEeecCCCcCccCc
Q 010089 158 IEEWEGT--LLLEYNHIE--EITESFFQSLPS-------------------------------LRVLNLSVNHYLTELPV 202 (518)
Q Consensus 158 ~~~~~~~--l~l~~~~i~--~~~~~~~~~l~~-------------------------------Lr~L~L~~~~~~~~lp~ 202 (518)
......+ +++....+. .+....|.+|++ ||+|++.++ .++.+|.
T Consensus 528 ~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~ 606 (1153)
T PLN03210 528 NTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPS 606 (1153)
T ss_pred CcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCC
Confidence 0000000 111111111 111122222222 344444333 3344444
Q ss_pred cccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCC
Q 010089 203 GISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNV 282 (518)
Q Consensus 203 ~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 282 (518)
.+ .+.+|+.|+++++.++.+|.++..+++|+.|+++++..+ ..+|. ++.+++|++|++.+|....
T Consensus 607 ~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l---~~ip~--ls~l~~Le~L~L~~c~~L~--------- 671 (1153)
T PLN03210 607 NF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL---KEIPD--LSMATNLETLKLSDCSSLV--------- 671 (1153)
T ss_pred cC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCc---CcCCc--cccCCcccEEEecCCCCcc---------
Confidence 44 245566666666666556655666666666666655544 55554 5556666666665554311
Q ss_pred CcchhhhhHHHhhc-----------------------ccccceEEEEEecCccccccccCcchhhccceeecccCCCCCc
Q 010089 283 LSDDAESLMKEIHC-----------------------LEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPL 339 (518)
Q Consensus 283 ~~~~~~~~~~~l~~-----------------------L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~ 339 (518)
.....+.+ +++|+.+++..+ .....+ +.....|+.|+++++. +..
T Consensus 672 ------~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc--~~L~~~---p~~~~nL~~L~L~~n~-i~~ 739 (1153)
T PLN03210 672 ------ELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGC--SRLKSF---PDISTNISWLDLDETA-IEE 739 (1153)
T ss_pred ------ccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCC--CCcccc---ccccCCcCeeecCCCc-ccc
Confidence 11112223 333333333211 111111 1112334444444432 122
Q ss_pred ccccc------------------------------ccccccceEEeccC-cCccccccCccccccccEEEEecCCCCCCC
Q 010089 340 NLLHL------------------------------ANMEHLQLFSIWDS-NLEDWNVDCAGEVQKMLKLHFVNCSNVKDL 388 (518)
Q Consensus 340 ~~~~l------------------------------~~l~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l 388 (518)
++..+ ..+++|+.|++++| .+.. .|.+++.+++|+.|+|++|..+..+
T Consensus 740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~L 818 (1153)
T PLN03210 740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIENCINLETL 818 (1153)
T ss_pred ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc-cChhhhCCCCCCEEECCCCCCcCee
Confidence 21110 11246777777777 4443 5667888899999999999888888
Q ss_pred cccccCCCccEEEEecCcchhhhhcccchhccc-------cccccCCCCccCCCcceeeccCCccccccCCCCCCCCCcc
Q 010089 389 TWLVFVPNLKWLQIFNCDDMEEIISVEKFEKLG-------EVSEMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLE 461 (518)
Q Consensus 389 ~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~-------~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~ 461 (518)
|....+++|+.|++++|..+..++... .++. .+.+++..+..+++|+.|++.+|++++.++.....+++|+
T Consensus 819 P~~~~L~sL~~L~Ls~c~~L~~~p~~~--~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~ 896 (1153)
T PLN03210 819 PTGINLESLESLDLSGCSRLRTFPDIS--TNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLE 896 (1153)
T ss_pred CCCCCccccCEEECCCCCccccccccc--cccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCC
Confidence 865578899999999998877665321 1111 1224455677889999999999999999988888899999
Q ss_pred eEeccCCCCCcCCCC
Q 010089 462 RIGISECPKLKKLPL 476 (518)
Q Consensus 462 ~L~i~~C~~L~~lp~ 476 (518)
.+++++|++|+.++.
T Consensus 897 ~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 897 TVDFSDCGALTEASW 911 (1153)
T ss_pred eeecCCCcccccccC
Confidence 999999999987654
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=4.3e-21 Score=213.76 Aligned_cols=293 Identities=18% Similarity=0.173 Sum_probs=177.9
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCc-cchhhhcCCCCcEeeccCCcc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRG-LPQELKALVNLRYLNLDYTNE 243 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l~~~~~ 243 (518)
+++++|.+....+..++++++|++|++++|.....+|..++++++|++|++++|.+.. +|..++++++|++|++++|..
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 6666666664433347777777777777775555677777777777777777776654 677777777777777777765
Q ss_pred cccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchh
Q 010089 244 MCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQ 323 (518)
Q Consensus 244 l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~ 323 (518)
. ..+|.. ++++++|++|++.+|.... ..+ ..+..+++|+.+.+..+.... .++......
T Consensus 225 ~---~~~p~~-l~~l~~L~~L~L~~n~l~~------------~~p---~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l 283 (968)
T PLN00113 225 S---GEIPYE-IGGLTSLNHLDLVYNNLTG------------PIP---SSLGNLKNLQYLFLYQNKLSG--PIPPSIFSL 283 (968)
T ss_pred C---CcCChh-HhcCCCCCEEECcCceecc------------ccC---hhHhCCCCCCEEECcCCeeec--cCchhHhhc
Confidence 4 456665 6777777777777765421 122 234455555555554332110 111111122
Q ss_pred hccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCc-ccccCCCccEEEE
Q 010089 324 NITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT-WLVFVPNLKWLQI 402 (518)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~L 402 (518)
..|++|++++|......+..+..+++|+.|++++|.+....|.++..+++|+.|++++|.....+| .++.+++|+.|++
T Consensus 284 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L 363 (968)
T PLN00113 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDL 363 (968)
T ss_pred cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEEC
Confidence 457788887775444555667777888888888886666567777778888888888775444454 5677788888888
Q ss_pred ecCcchhhhhccc-chhccccc--------cccCCCCccCCCcceeeccCCccccccCCCCCCCCCcceEeccCCCCCcC
Q 010089 403 FNCDDMEEIISVE-KFEKLGEV--------SEMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGISECPKLKK 473 (518)
Q Consensus 403 ~~c~~l~~~~~~~-~~~~~~~l--------~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~C~~L~~ 473 (518)
+++.....++..- ....+..+ ..++.....+++|+.|.+.+|.--..+|.....+++|+.|++++|.--..
T Consensus 364 s~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 443 (968)
T PLN00113 364 STNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR 443 (968)
T ss_pred CCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCc
Confidence 7765322222100 00000000 01222345667788888877654445666666778888888887643333
Q ss_pred CCCCC
Q 010089 474 LPLNS 478 (518)
Q Consensus 474 lp~~~ 478 (518)
+|...
T Consensus 444 ~~~~~ 448 (968)
T PLN00113 444 INSRK 448 (968)
T ss_pred cChhh
Confidence 44433
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=5.1e-21 Score=213.13 Aligned_cols=293 Identities=19% Similarity=0.239 Sum_probs=134.2
Q ss_pred eeccccccc-ccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCC-ccchhhhcCCCCcEeeccCCc
Q 010089 165 LLLEYNHIE-EITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVR-GLPQELKALVNLRYLNLDYTN 242 (518)
Q Consensus 165 l~l~~~~i~-~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~ 242 (518)
+++++|++. .+|...+..+++||+|++++|...+.+|. +.+++|++|++++|.+. .+|..++++++|++|++++|.
T Consensus 98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 175 (968)
T PLN00113 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175 (968)
T ss_pred EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc
Confidence 666666665 45655555666666666666643334443 34566666666666554 356666666666666666665
Q ss_pred ccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcch
Q 010089 243 EMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKL 322 (518)
Q Consensus 243 ~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l 322 (518)
.. ..+|.. ++++++|++|++.+|.... .....+.++++|+.+++..+.... .++.....
T Consensus 176 l~---~~~p~~-~~~l~~L~~L~L~~n~l~~---------------~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~ 234 (968)
T PLN00113 176 LV---GKIPNS-LTNLTSLEFLTLASNQLVG---------------QIPRELGQMKSLKWIYLGYNNLSG--EIPYEIGG 234 (968)
T ss_pred cc---ccCChh-hhhCcCCCeeeccCCCCcC---------------cCChHHcCcCCccEEECcCCccCC--cCChhHhc
Confidence 43 445554 5666666666666654421 111223334444444433222110 01111111
Q ss_pred hhccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCc-ccccCCCccEEE
Q 010089 323 QNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT-WLVFVPNLKWLQ 401 (518)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~ 401 (518)
...|++|++++|......+..+..+++|+.|++++|.+....|.++..+++|++|++++|.....+| ++..+++|+.|+
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 314 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314 (968)
T ss_pred CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEE
Confidence 1234445554443322333344444445555554444433334444444444444444443222222 234444444444
Q ss_pred EecCcchhhhhcc-cchhccccc--------cccCCCCccCCCcceeeccCCccccccCCCCCCCCCcceEeccCCCCCc
Q 010089 402 IFNCDDMEEIISV-EKFEKLGEV--------SEMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGISECPKLK 472 (518)
Q Consensus 402 L~~c~~l~~~~~~-~~~~~~~~l--------~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~C~~L~ 472 (518)
+++|.....++.. .....+..+ ..++..++.+++|+.|+++++.--..+|.....+++|+.|++.+|+--.
T Consensus 315 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~ 394 (968)
T PLN00113 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG 394 (968)
T ss_pred CCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecc
Confidence 4443322111110 000000000 0111134455666666666653333445445555666666666664444
Q ss_pred CCCCCCCC
Q 010089 473 KLPLNSSS 480 (518)
Q Consensus 473 ~lp~~~~~ 480 (518)
.+|..+..
T Consensus 395 ~~p~~~~~ 402 (968)
T PLN00113 395 EIPKSLGA 402 (968)
T ss_pred cCCHHHhC
Confidence 45544333
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=1.3e-19 Score=202.44 Aligned_cols=284 Identities=22% Similarity=0.337 Sum_probs=185.9
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCC-cCCccchhhhcCCCCcEeeccCCcc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSST-KVRGLPQELKALVNLRYLNLDYTNE 243 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~ 243 (518)
+++.++++..++.. +..+++|++|+++++..++.+| .++.+++|++|++++| .+..+|.+++++++|+.|++++|..
T Consensus 616 L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~ 693 (1153)
T PLN03210 616 LQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN 693 (1153)
T ss_pred EECcCccccccccc-cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCC
Confidence 77778888887766 6788999999999886778887 5888899999999988 6778999999999999999999887
Q ss_pred cccccCCchhhhcCCCCCcEEeccccCCCC-ccccccCCC----CcchhhhhHHHhhcccccceEEEEEecCcc----cc
Q 010089 244 MCKMCKIPEQLISSFSKLQVLRMLHCGSNH-WPIAEEGNV----LSDDAESLMKEIHCLEQLNLIALSLRGSRG----VE 314 (518)
Q Consensus 244 l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~----~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~----~~ 314 (518)
+ ..+|.. + ++++|++|++.+|.... ++... .+. ........+.....+++|..+.+....... ..
T Consensus 694 L---~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~~~-~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~ 767 (1153)
T PLN03210 694 L---EILPTG-I-NLKSLYRLNLSGCSRLKSFPDIS-TNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQ 767 (1153)
T ss_pred c---CccCCc-C-CCCCCCEEeCCCCCCcccccccc-CCcCeeecCCCccccccccccccccccccccccchhhcccccc
Confidence 7 888875 3 78899999998885422 11000 000 000000000000122333333222100000 00
Q ss_pred ccc-cCcchhhccceeecccCCCCCccccccccccccceEEeccC-cCccccccCccccccccEEEEecCCCCCCCc---
Q 010089 315 NFL-KFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDS-NLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT--- 389 (518)
Q Consensus 315 ~l~-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--- 389 (518)
.+. ........|+.|++++|..+..++..+..+++|+.|++++| .++. .|... .+++|++|++++|..+..+|
T Consensus 768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~-LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~ 845 (1153)
T PLN03210 768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET-LPTGI-NLESLESLDLSGCSRLRTFPDIS 845 (1153)
T ss_pred ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe-eCCCC-CccccCEEECCCCCccccccccc
Confidence 000 00112345788888888777777777888888888888887 6665 34433 57777777777776554433
Q ss_pred ------------------ccccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccC
Q 010089 390 ------------------WLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIY 451 (518)
Q Consensus 390 ------------------~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 451 (518)
++..+++|+.|++++|+.++.++. ....+++|+.|.+.+|.++..++
T Consensus 846 ~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~---------------~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 846 TNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL---------------NISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred cccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc---------------ccccccCCCeeecCCCccccccc
Confidence 345577788888888777776543 56678999999999999998664
Q ss_pred CCC-------------CCCCCcceEeccCCCCCcC
Q 010089 452 RDP-------------LPFPHLERIGISECPKLKK 473 (518)
Q Consensus 452 ~~~-------------~~~~~L~~L~i~~C~~L~~ 473 (518)
... ..+|+...+.+.+|.+|..
T Consensus 911 l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 911 WNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred CCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence 321 2345556677888888763
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=3.1e-21 Score=186.72 Aligned_cols=308 Identities=19% Similarity=0.240 Sum_probs=212.8
Q ss_pred ccccccc--ccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhh-hcCCCCcEeeccCCcc
Q 010089 167 LEYNHIE--EITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQEL-KALVNLRYLNLDYTNE 243 (518)
Q Consensus 167 l~~~~i~--~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~l~~~~~ 243 (518)
+..|++. .+|+. +-++..|.+||||.| .+++.|..+..-+++-.|+|++|+|+.+|..+ -+|+.|-.||+++|+.
T Consensus 85 ~R~N~LKnsGiP~d-iF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTD-IFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhccccccCCCCch-hcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence 3444443 56777 456888888888888 78888888888888888888888888888764 5788888888888865
Q ss_pred cccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchh
Q 010089 244 MCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQ 323 (518)
Q Consensus 244 l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~ 323 (518)
..+|+. +..+.+|++|.++++... -.-+..+++++.|+.+.++.... ....++....-.
T Consensus 163 ----e~LPPQ-~RRL~~LqtL~Ls~NPL~---------------hfQLrQLPsmtsL~vLhms~TqR-Tl~N~Ptsld~l 221 (1255)
T KOG0444|consen 163 ----EMLPPQ-IRRLSMLQTLKLSNNPLN---------------HFQLRQLPSMTSLSVLHMSNTQR-TLDNIPTSLDDL 221 (1255)
T ss_pred ----hhcCHH-HHHHhhhhhhhcCCChhh---------------HHHHhcCccchhhhhhhcccccc-hhhcCCCchhhh
Confidence 788887 888888899888887662 24456677777777777764432 233344333344
Q ss_pred hccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCc-ccccCCCccEEEE
Q 010089 324 NITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT-WLVFVPNLKWLQI 402 (518)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~L 402 (518)
.+|..++++.+ ++..+|+.+-.+++|+.|++++|.+++. .-..+...+|++|.++.+ .+..+| .+..+++|+.|++
T Consensus 222 ~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~ 298 (1255)
T KOG0444|consen 222 HNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYA 298 (1255)
T ss_pred hhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHh
Confidence 56777787764 5677788888888999999999877763 223455667888888776 566666 5677888888777
Q ss_pred ecCcc-hhhhhcc-cchhccc-------cccccCCCCccCCCcceeeccCCccccccCCCCCCCCCcceEeccCCCCCcC
Q 010089 403 FNCDD-MEEIISV-EKFEKLG-------EVSEMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGISECPKLKK 473 (518)
Q Consensus 403 ~~c~~-l~~~~~~-~~~~~~~-------~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~C~~L~~ 473 (518)
.++.. .+.+|+. .....++ .+.=.+.++..+++|+.|.+.. ..|-.+|..+.-++.|+.|++++.|+|.
T Consensus 299 n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLV- 376 (1255)
T KOG0444|consen 299 NNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLV- 376 (1255)
T ss_pred ccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCcc-
Confidence 65431 1122210 0000000 0011234677788889888875 6788889888889999999999999997
Q ss_pred CCCCCCCCCCcceEEEchhhhhccCccCc
Q 010089 474 LPLNSSSAKGRKIVIYGEKEWWEELQWED 502 (518)
Q Consensus 474 lp~~~~~~~~~l~~~~~~~~~~~~~~~~~ 502 (518)
.|.-+......+..-+.+..+..+++...
T Consensus 377 MPPKP~da~~~lefYNIDFSLq~QlrlAG 405 (1255)
T KOG0444|consen 377 MPPKPNDARKKLEFYNIDFSLQHQLRLAG 405 (1255)
T ss_pred CCCCcchhhhcceeeecceehhhHHhhcc
Confidence 55555554467777777766666665543
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=2.6e-18 Score=165.47 Aligned_cols=299 Identities=19% Similarity=0.219 Sum_probs=174.2
Q ss_pred hhhhhheeecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccc-hhhhcCCCCcEe
Q 010089 158 IEEWEGTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLP-QELKALVNLRYL 236 (518)
Q Consensus 158 ~~~~~~~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L 236 (518)
...+...+++++|++..+...+|.++++|+.+++..| .++.+|...+...||+.|+|.+|.|.++- +++..++.|+.|
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 3445566999999999999999999999999999999 89999988888888999999999988864 467888899999
Q ss_pred eccCCcccccccCCchhhhcCCCCCcEEeccccCCCCccccccC------------CCCcchhhhhHHHhhcccccceEE
Q 010089 237 NLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEG------------NVLSDDAESLMKEIHCLEQLNLIA 304 (518)
Q Consensus 237 ~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~~L~~L~~l~ 304 (518)
|++.|.. ..+|...+..-.++++|++.++.+......-.+ |..+.-.. ...++|++|+.++
T Consensus 155 DLSrN~i----s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~---r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 155 DLSRNLI----SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQ---RSFKRLPKLESLD 227 (873)
T ss_pred hhhhchh----hcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCH---HHhhhcchhhhhh
Confidence 9998865 667765566667888888888877554322211 11111112 2233444444444
Q ss_pred EEEecC-----ccccccccCcch-----------------hhccceeecccCCCCCccc-cccccccccceEEeccCcCc
Q 010089 305 LSLRGS-----RGVENFLKFPKL-----------------QNITQALHIKDCNSLPLNL-LHLANMEHLQLFSIWDSNLE 361 (518)
Q Consensus 305 ~~~~~~-----~~~~~l~~~~~l-----------------~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~ 361 (518)
+..+.. ..+..+.++.++ ...+++|+++.+. +..+. .++-+++.|+.|+++.|.+.
T Consensus 228 LnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L~lS~NaI~ 306 (873)
T KOG4194|consen 228 LNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQLDLSYNAIQ 306 (873)
T ss_pred ccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch-hhhhhcccccccchhhhhccchhhhh
Confidence 433221 112222211111 1224555555443 22222 45556666666666666666
Q ss_pred cccccCccccccccEEEEecCCCCCCCc--ccccCCCccEEEEecCcchhhhhcccchh--ccccc-------c----cc
Q 010089 362 DWNVDCAGEVQKMLKLHFVNCSNVKDLT--WLVFVPNLKWLQIFNCDDMEEIISVEKFE--KLGEV-------S----EM 426 (518)
Q Consensus 362 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~~~~~~~~~--~~~~l-------~----~~ 426 (518)
.+.++.....++|+.|+|+++ .++.++ .+..|..|+.|.|+. +.++.+....+.+ ++..+ + .-
T Consensus 307 rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa 384 (873)
T KOG4194|consen 307 RIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA 384 (873)
T ss_pred eeecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc
Confidence 555555556666666666665 444443 344455666666655 2344443211000 00000 0 00
Q ss_pred CCCCccCCCcceeeccCCccccccCC-CCCCCCCcceEeccCC
Q 010089 427 MGEPILFSELELLVISNASNLKRIYR-DPLPFPHLERIGISEC 468 (518)
Q Consensus 427 ~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~i~~C 468 (518)
.....++++|++|.+.+ .+++.++. .+..+++|++|++.+.
T Consensus 385 a~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 385 AVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred hhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCC
Confidence 11233456666666665 35555554 2344566666666553
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.68 E-value=1.5e-18 Score=168.36 Aligned_cols=246 Identities=20% Similarity=0.231 Sum_probs=158.5
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCcc-chhhhcCCCCcEeeccCCcc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGL-PQELKALVNLRYLNLDYTNE 243 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~ 243 (518)
++|++|+|..+|...|.++..|-+||||+| .+..+|..+..|.+|++|+|++|.+... -..+..|++|++|++++++.
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence 555555555555555555555555555555 5555555555555555555555543320 01122245555555555543
Q ss_pred cccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchh
Q 010089 244 MCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQ 323 (518)
Q Consensus 244 l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~ 323 (518)
- ...+|.+ +..+.||+.++++.+. .+.....+.++.+|+.++++.+.... +..-....
T Consensus 210 T--l~N~Pts-ld~l~NL~dvDlS~N~----------------Lp~vPecly~l~~LrrLNLS~N~ite---L~~~~~~W 267 (1255)
T KOG0444|consen 210 T--LDNIPTS-LDDLHNLRDVDLSENN----------------LPIVPECLYKLRNLRRLNLSGNKITE---LNMTEGEW 267 (1255)
T ss_pred h--hhcCCCc-hhhhhhhhhccccccC----------------CCcchHHHhhhhhhheeccCcCceee---eeccHHHH
Confidence 1 1445554 5566666666665543 34455556677777777776544322 22222344
Q ss_pred hccceeecccCCCCCccccccccccccceEEeccCc--CccccccCccccccccEEEEecCCCCCCCc-ccccCCCccEE
Q 010089 324 NITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSN--LEDWNVDCAGEVQKMLKLHFVNCSNVKDLT-WLVFVPNLKWL 400 (518)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L 400 (518)
..+++|+++.+. +..+|+.+.+++.|+.|...+|+ ++. .|+.++.+.+|+.+...++ .++-+| .+..++.|+.|
T Consensus 268 ~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeG-iPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 268 ENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEG-IPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKL 344 (1255)
T ss_pred hhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccC-CccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHh
Confidence 567888888864 67888899999999999998884 444 6888999999999988876 677666 78889999999
Q ss_pred EEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCC
Q 010089 401 QIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYR 452 (518)
Q Consensus 401 ~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 452 (518)
.|+.+. +-.+| ..+.-+|.|+.|++...++|.--|.
T Consensus 345 ~L~~Nr-LiTLP---------------eaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 345 KLDHNR-LITLP---------------EAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred cccccc-eeech---------------hhhhhcCCcceeeccCCcCccCCCC
Confidence 998644 43343 3777899999999999998865554
No 9
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.67 E-value=7.6e-18 Score=160.93 Aligned_cols=97 Identities=40% Similarity=0.790 Sum_probs=83.6
Q ss_pred CcccCCCCchHHHHHHHHhcCCCChhHHHHHHHHHhccCCcccchHHHHHHHHhhhcCCCCchhhhhHhhhhcccCCCCc
Q 010089 1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLFPEDSE 80 (518)
Q Consensus 1 I~~~c~GlPLai~~ig~~L~~~~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~~sY~~L~~~~lk~cfl~~a~fp~~~~ 80 (518)
|+++|+|+||||+++|+.|+.+.+.++|+.+++.+........+....+..++.+||+.||+ ++|.||+|||+||+++.
T Consensus 188 i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~f~~L~~f~~~~~ 266 (287)
T PF00931_consen 188 IVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPD-ELRRCFLYLSIFPEGVP 266 (287)
T ss_dssp HHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHT-CCHHHHHHGGGSGTTS-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCc-cHHHHHhhCcCCCCCce
Confidence 57899999999999999997766789999999988876654444455899999999999999 89999999999999999
Q ss_pred cChHHHHHHHHHhCCCcc
Q 010089 81 IRKTDLIVYWESEGLLDS 98 (518)
Q Consensus 81 i~~~~Li~~Wia~g~i~~ 98 (518)
|+++.|+++|+|+|||.+
T Consensus 267 i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 267 IPRERLIRLWVAEGFISS 284 (287)
T ss_dssp EEHHHHHHHHTT-HHTC-
T ss_pred ECHHHHHHHHHHCCCCcc
Confidence 999999999999999876
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.67 E-value=3.9e-18 Score=164.26 Aligned_cols=303 Identities=19% Similarity=0.203 Sum_probs=175.3
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCcc-CccccCccccCEEecCCCcCCccchh-hhcCCCCcEeeccCCc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVRGLPQE-LKALVNLRYLNLDYTN 242 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 242 (518)
++|+.|.|.+++...|..-.++++|+|++| .++.+ -..|..+.+|.+|.|+.|.++.+|.- +.+|++|+.|++..|.
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 566666666666555665566666666666 33333 33455566666666666666666543 3446666666666654
Q ss_pred ccccccCCchhhhcCCCCCcEEeccccCCCCcccccc------------CCCCcchhhhhHHHhhcccccceEEEEEecC
Q 010089 243 EMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEE------------GNVLSDDAESLMKEIHCLEQLNLIALSLRGS 310 (518)
Q Consensus 243 ~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~ 310 (518)
. +.+..-.+..|++|+.|.+..+.+..+.++.. .|.. ..-.-+.+..|+.|+.++++.+..
T Consensus 233 i----rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l---~~vn~g~lfgLt~L~~L~lS~NaI 305 (873)
T KOG4194|consen 233 I----RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL---QAVNEGWLFGLTSLEQLDLSYNAI 305 (873)
T ss_pred e----eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh---hhhhcccccccchhhhhccchhhh
Confidence 3 22222224455555555555554433322220 0000 111123344556666666665443
Q ss_pred ccccccccCcchhhccceeecccCCCCCccc-cccccccccceEEeccCcCccccccCccccccccEEEEecCCC---CC
Q 010089 311 RGVENFLKFPKLQNITQALHIKDCNSLPLNL-LHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSN---VK 386 (518)
Q Consensus 311 ~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~---l~ 386 (518)
..+. .........|+.|+++.+. ++.++ .++..+..|+.|.++.|.+..+.-..+..+++|++|+|+.+.- ++
T Consensus 306 ~rih--~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE 382 (873)
T KOG4194|consen 306 QRIH--IDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE 382 (873)
T ss_pred heee--cchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence 2211 1222344567888888764 34444 6777788888888888877765555567788899998877531 11
Q ss_pred CCc-ccccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCC-CCCCCCcceEe
Q 010089 387 DLT-WLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRD-PLPFPHLERIG 464 (518)
Q Consensus 387 ~l~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~ 464 (518)
+-. .+..+++|+.|.+.| ++++.++.. ...+|+.|+.|+|.+. -+.++... ...+ .|++|.
T Consensus 383 Daa~~f~gl~~LrkL~l~g-Nqlk~I~kr--------------Afsgl~~LE~LdL~~N-aiaSIq~nAFe~m-~Lk~Lv 445 (873)
T KOG4194|consen 383 DAAVAFNGLPSLRKLRLTG-NQLKSIPKR--------------AFSGLEALEHLDLGDN-AIASIQPNAFEPM-ELKELV 445 (873)
T ss_pred cchhhhccchhhhheeecC-ceeeecchh--------------hhccCcccceecCCCC-cceeecccccccc-hhhhhh
Confidence 111 245699999999998 567777652 5568999999999884 55555432 3344 777776
Q ss_pred cc------CCCCCcCCCCCCCCCC-CcceEEEch-hhhhc
Q 010089 465 IS------ECPKLKKLPLNSSSAK-GRKIVIYGE-KEWWE 496 (518)
Q Consensus 465 i~------~C~~L~~lp~~~~~~~-~~l~~~~~~-~~~~~ 496 (518)
+. +| +|+.+++++.... +.-.+..|. +||..
T Consensus 446 ~nSssflCDC-ql~Wl~qWl~~~~lq~sv~a~CayPe~La 484 (873)
T KOG4194|consen 446 MNSSSFLCDC-QLKWLAQWLYRRKLQSSVIAKCAYPEPLA 484 (873)
T ss_pred hcccceEEec-cHHHHHHHHHhcccccceeeeccCCcccc
Confidence 64 46 7777777776655 333333333 55543
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.64 E-value=4.9e-18 Score=156.65 Aligned_cols=98 Identities=28% Similarity=0.377 Sum_probs=75.5
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCcccc-CccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGIS-SLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNE 243 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~-~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 243 (518)
+.+..|++..+|+ |..+..|..|.++.| .++.+|..++ .+.++.+||++.|+++++|+++..+++|..||+++|..
T Consensus 211 LyL~~Nki~~lPe--f~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i 287 (565)
T KOG0472|consen 211 LYLRRNKIRFLPE--FPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI 287 (565)
T ss_pred HHhhhcccccCCC--CCccHHHHHHHhccc-HHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc
Confidence 5666677766663 677777777777776 6777777766 78888888888888888888888888888888888866
Q ss_pred cccccCCchhhhcCCCCCcEEeccccCC
Q 010089 244 MCKMCKIPEQLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 244 l~~~~~lp~~~~~~l~~L~~L~l~~~~~ 271 (518)
..+|.+ ++++ .|+.|.+.++..
T Consensus 288 ----s~Lp~s-Lgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 288 ----SSLPYS-LGNL-HLKFLALEGNPL 309 (565)
T ss_pred ----ccCCcc-cccc-eeeehhhcCCch
Confidence 778876 7888 788888887765
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.60 E-value=1.3e-17 Score=153.85 Aligned_cols=249 Identities=22% Similarity=0.278 Sum_probs=181.9
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCccc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEM 244 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l 244 (518)
+.++.|.+..+.++ +.++..|.+|+++++ ...++|.+|+.+..++.|+.+++++.++|+.++.+.+|++|+.+++..
T Consensus 50 lils~N~l~~l~~d-l~nL~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~- 126 (565)
T KOG0472|consen 50 LILSHNDLEVLRED-LKNLACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNEL- 126 (565)
T ss_pred hhhccCchhhccHh-hhcccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccce-
Confidence 67788999888887 899999999999999 888999999999999999999999999999999999999999999977
Q ss_pred ccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhh
Q 010089 245 CKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQN 324 (518)
Q Consensus 245 ~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~ 324 (518)
..+|++ ++.+..|..|+..++.... .+..+..+.++..| .+..+
T Consensus 127 ---~el~~~-i~~~~~l~dl~~~~N~i~s-------------lp~~~~~~~~l~~l---~~~~n---------------- 170 (565)
T KOG0472|consen 127 ---KELPDS-IGRLLDLEDLDATNNQISS-------------LPEDMVNLSKLSKL---DLEGN---------------- 170 (565)
T ss_pred ---eecCch-HHHHhhhhhhhcccccccc-------------CchHHHHHHHHHHh---hcccc----------------
Confidence 778887 8999999999998877642 33333333333332 22211
Q ss_pred ccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCcccccCCCccEEEEec
Q 010089 325 ITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLTWLVFVPNLKWLQIFN 404 (518)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~L~~ 404 (518)
.+...+.....++.|++|+...|-++. .|..++.+.+|..|++..+ ++..+|.+..+..|++|++..
T Consensus 171 -----------~l~~l~~~~i~m~~L~~ld~~~N~L~t-lP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~ 237 (565)
T KOG0472|consen 171 -----------KLKALPENHIAMKRLKHLDCNSNLLET-LPPELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGE 237 (565)
T ss_pred -----------chhhCCHHHHHHHHHHhcccchhhhhc-CChhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcc
Confidence 123333333346677777766665555 4444677777777777665 566677777777777777765
Q ss_pred CcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCCCCCCCCcceEeccCCCCCcCCCCCCCCCC
Q 010089 405 CDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGISECPKLKKLPLNSSSAK 482 (518)
Q Consensus 405 c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~ 482 (518)
+.++.++. .....+++|..|++++ .+++++|.++.-+.+|++|++++. .+..+|..+.+++
T Consensus 238 -N~i~~lpa--------------e~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnlh 298 (565)
T KOG0472|consen 238 -NQIEMLPA--------------EHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNLH 298 (565)
T ss_pred -cHHHhhHH--------------HHhcccccceeeeccc-cccccCchHHHHhhhhhhhcccCC-ccccCCcccccce
Confidence 44555543 1233677778888877 477788877777777888888773 7777777766654
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.46 E-value=8.3e-13 Score=138.02 Aligned_cols=230 Identities=20% Similarity=0.163 Sum_probs=124.7
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCccc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEM 244 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l 244 (518)
+.+.+|+++.+|.. .++|++|++++| .++.+|.. ..+|+.|++++|.++.+|.. ..+|+.|++++|..
T Consensus 227 L~L~~N~Lt~LP~l----p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~L- 294 (788)
T PRK15387 227 LVIPDNNLTSLPAL----PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQL- 294 (788)
T ss_pred EEccCCcCCCCCCC----CCCCcEEEecCC-ccCcccCc---ccccceeeccCCchhhhhhc---hhhcCEEECcCCcc-
Confidence 55555555555431 345555555555 44455532 24555555555555555542 23455566666543
Q ss_pred ccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhh
Q 010089 245 CKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQN 324 (518)
Q Consensus 245 ~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~ 324 (518)
..+|. .+++|++|++++|..... +..+ . +|..+.+..+... .++.+..
T Consensus 295 ---t~LP~----~p~~L~~LdLS~N~L~~L-------------p~lp---~---~L~~L~Ls~N~L~------~LP~lp~ 342 (788)
T PRK15387 295 ---TSLPV----LPPGLQELSVSDNQLASL-------------PALP---S---ELCKLWAYNNQLT------SLPTLPS 342 (788)
T ss_pred ---ccccc----cccccceeECCCCccccC-------------CCCc---c---cccccccccCccc------ccccccc
Confidence 44544 135566666666654221 1111 1 1222222222211 1122334
Q ss_pred ccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCcccccCCCccEEEEec
Q 010089 325 ITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLTWLVFVPNLKWLQIFN 404 (518)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~L~~ 404 (518)
.|+.|+++++. +..++.. ..+|+.|++++|.+..+ |. .+++|+.|+++++ .+..+|.. .++|+.|++++
T Consensus 343 ~Lq~LdLS~N~-Ls~LP~l---p~~L~~L~Ls~N~L~~L-P~---l~~~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~ 411 (788)
T PRK15387 343 GLQELSVSDNQ-LASLPTL---PSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGN-RLTSLPVL--PSELKELMVSG 411 (788)
T ss_pred ccceEecCCCc-cCCCCCC---CcccceehhhccccccC-cc---cccccceEEecCC-cccCCCCc--ccCCCEEEccC
Confidence 56777777653 3444321 24667777777766642 32 2356778888776 45555532 36788888887
Q ss_pred CcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCCCCCCCCcceEeccCCC
Q 010089 405 CDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGISECP 469 (518)
Q Consensus 405 c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~C~ 469 (518)
+. +..++. .+.+|+.|++.++ .++.+|..+..+++|+.|++++++
T Consensus 412 N~-LssIP~------------------l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 412 NR-LTSLPM------------------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred Cc-CCCCCc------------------chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence 54 443331 2346778888774 677888777788888888888864
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.44 E-value=1.1e-14 Score=134.55 Aligned_cols=252 Identities=18% Similarity=0.230 Sum_probs=167.5
Q ss_pred eeEEecCcCCCCCCchhhhhhe-eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCC-CcC
Q 010089 143 KFLVRAGVGLTDAPKIEEWEGT-LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSS-TKV 220 (518)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~-l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~-~~l 220 (518)
..+..++..+.++|....-..+ +.|..|.|+.+|+.+|+.+++||.|||+.|.....-|..|.++..|..|-+.+ |+|
T Consensus 49 ~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred ceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 3445566777888766544444 89999999999999999999999999999944444588999999999998888 799
Q ss_pred Cccchh-hhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccc
Q 010089 221 RGLPQE-LKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQ 299 (518)
Q Consensus 221 ~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 299 (518)
+++|+. ++.|..|+-|.+.-|+. ..++.+.+..+++|..|.+.++....... ..+..+..++.
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~i----~Cir~~al~dL~~l~lLslyDn~~q~i~~------------~tf~~l~~i~t 192 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANHI----NCIRQDALRDLPSLSLLSLYDNKIQSICK------------GTFQGLAAIKT 192 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhhh----cchhHHHHHHhhhcchhcccchhhhhhcc------------ccccchhccch
Confidence 999985 78899999999988876 67777789999999999998876532211 11111222211
Q ss_pred cceEEEE--------------------EecCc--cc-----ccccc--Ccchhhcccee--ec-ccCCCCCccc-ccccc
Q 010089 300 LNLIALS--------------------LRGSR--GV-----ENFLK--FPKLQNITQAL--HI-KDCNSLPLNL-LHLAN 346 (518)
Q Consensus 300 L~~l~~~--------------------~~~~~--~~-----~~l~~--~~~l~~~L~~L--~l-~~~~~~~~~~-~~l~~ 346 (518)
+..-... +.+.. .- ..+.. ..+....++.+ .+ +.|.-....| ..+..
T Consensus 193 lhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~ 272 (498)
T KOG4237|consen 193 LHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKK 272 (498)
T ss_pred HhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhh
Confidence 1110000 00000 00 00000 00111111111 11 1111111112 56788
Q ss_pred ccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCc--ccccCCCccEEEEecCcchhhhh
Q 010089 347 MEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT--WLVFVPNLKWLQIFNCDDMEEII 412 (518)
Q Consensus 347 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~~~ 412 (518)
+++|+.|++++|.++.+-..|+.....++.|.|..+ .++.+. .+..+..|+.|+|+++ .++.+.
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~ 338 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDN-QITTVA 338 (498)
T ss_pred cccceEeccCCCccchhhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCC-eeEEEe
Confidence 999999999999999888888888999999999876 555554 3567889999999884 455443
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=7.6e-13 Score=139.09 Aligned_cols=92 Identities=23% Similarity=0.344 Sum_probs=48.2
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCccc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEM 244 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l 244 (518)
+.+.+++++.+|.. + .++|+.|++++| .++.+|..+. .+|++|++++|+++++|..+. .+|+.|++++|..
T Consensus 183 L~L~~~~LtsLP~~-I--p~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L- 253 (754)
T PRK15370 183 LRLKILGLTTIPAC-I--PEQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI- 253 (754)
T ss_pred EEeCCCCcCcCCcc-c--ccCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCcc-
Confidence 45555555555543 2 135556666665 4555555443 356666666666655555443 3556666666543
Q ss_pred ccccCCchhhhcCCCCCcEEeccccCC
Q 010089 245 CKMCKIPEQLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 245 ~~~~~lp~~~~~~l~~L~~L~l~~~~~ 271 (518)
..+|.. +. .+|+.|++++|..
T Consensus 254 ---~~LP~~-l~--s~L~~L~Ls~N~L 274 (754)
T PRK15370 254 ---TELPER-LP--SALQSLDLFHNKI 274 (754)
T ss_pred ---CcCChh-Hh--CCCCEEECcCCcc
Confidence 455544 21 3555666555544
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.41 E-value=1.5e-12 Score=136.21 Aligned_cols=248 Identities=19% Similarity=0.138 Sum_probs=171.9
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCccc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEM 244 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l 244 (518)
++++.+++..+|+. +. ++|+.|++++| .++.+|.. +++|++|++++|+++.+|.. .++|+.|++++|..
T Consensus 206 LdLs~~~LtsLP~~-l~--~~L~~L~L~~N-~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L- 274 (788)
T PRK15387 206 LNVGESGLTTLPDC-LP--AHITTLVIPDN-NLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL- 274 (788)
T ss_pred EEcCCCCCCcCCcc-hh--cCCCEEEccCC-cCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCch-
Confidence 77888888888876 33 47899999998 78888853 57899999999999998863 46889999999865
Q ss_pred ccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhh
Q 010089 245 CKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQN 324 (518)
Q Consensus 245 ~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~ 324 (518)
..+|.. ..+|+.|++.+|.... .+. .+++|+.++++.+....++ .+..
T Consensus 275 ---~~Lp~l----p~~L~~L~Ls~N~Lt~-------------LP~------~p~~L~~LdLS~N~L~~Lp------~lp~ 322 (788)
T PRK15387 275 ---THLPAL----PSGLCKLWIFGNQLTS-------------LPV------LPPGLQELSVSDNQLASLP------ALPS 322 (788)
T ss_pred ---hhhhhc----hhhcCEEECcCCcccc-------------ccc------cccccceeECCCCccccCC------CCcc
Confidence 666652 3578889998887632 111 1245666666654433222 2334
Q ss_pred ccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCcccccCCCccEEEEec
Q 010089 325 ITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLTWLVFVPNLKWLQIFN 404 (518)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~L~~ 404 (518)
.|+.|++++|. +..++. ...+|+.|++++|.++.+ |. .+++|+.|.++++ .+..+|.+ .++|+.|++++
T Consensus 323 ~L~~L~Ls~N~-L~~LP~---lp~~Lq~LdLS~N~Ls~L-P~---lp~~L~~L~Ls~N-~L~~LP~l--~~~L~~LdLs~ 391 (788)
T PRK15387 323 ELCKLWAYNNQ-LTSLPT---LPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNN-RLTSLPAL--PSGLKELIVSG 391 (788)
T ss_pred cccccccccCc-cccccc---cccccceEecCCCccCCC-CC---CCcccceehhhcc-ccccCccc--ccccceEEecC
Confidence 57788887764 444432 124799999999988863 33 2467888888876 56666643 46899999988
Q ss_pred CcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCCCCCCCCcceEeccCCCCCcCCCCCCCCCCCc
Q 010089 405 CDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGISECPKLKKLPLNSSSAKGR 484 (518)
Q Consensus 405 c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~ 484 (518)
+. +..++. .+++|+.|+++++ .+..+|.. +.+|+.|+++++ +++.+|..+..+. +
T Consensus 392 N~-Lt~LP~------------------l~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~N-qLt~LP~sl~~L~-~ 446 (788)
T PRK15387 392 NR-LTSLPV------------------LPSELKELMVSGN-RLTSLPML---PSGLLSLSVYRN-QLTRLPESLIHLS-S 446 (788)
T ss_pred Cc-ccCCCC------------------cccCCCEEEccCC-cCCCCCcc---hhhhhhhhhccC-cccccChHHhhcc-C
Confidence 53 444332 2468999999996 68877753 357889999985 7899998765553 4
Q ss_pred ceEEEch
Q 010089 485 KIVIYGE 491 (518)
Q Consensus 485 l~~~~~~ 491 (518)
+..++..
T Consensus 447 L~~LdLs 453 (788)
T PRK15387 447 ETTVNLE 453 (788)
T ss_pred CCeEECC
Confidence 4444443
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.40 E-value=1.8e-14 Score=146.54 Aligned_cols=234 Identities=19% Similarity=0.223 Sum_probs=124.3
Q ss_pred CCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcE
Q 010089 184 PSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQV 263 (518)
Q Consensus 184 ~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~ 263 (518)
.+|.+++++.+ .+..+|+.++.+.+|+.+++.+|.+..+|..+...++|+.|.+..|.. ..+|+. ...++.|++
T Consensus 241 ~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel----~yip~~-le~~~sL~t 314 (1081)
T KOG0618|consen 241 LNLQYLDISHN-NLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNEL----EYIPPF-LEGLKSLRT 314 (1081)
T ss_pred ccceeeecchh-hhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhh----hhCCCc-ccccceeee
Confidence 56677777777 666677777777777777777777777777777777777777777654 566664 556777777
Q ss_pred EeccccCCCCccccccCCCC---------c---chhhh-hHHHhhcccccceEEEEEecCccccccccCcchhhccceee
Q 010089 264 LRMLHCGSNHWPIAEEGNVL---------S---DDAES-LMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALH 330 (518)
Q Consensus 264 L~l~~~~~~~~~~~~~~~~~---------~---~~~~~-~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~ 330 (518)
|++..+....+|........ . ...+. .-.....|..|..-++.+.+ ..++.+ ....+|+.|+
T Consensus 315 LdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd-~c~p~l----~~~~hLKVLh 389 (1081)
T KOG0618|consen 315 LDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD-SCFPVL----VNFKHLKVLH 389 (1081)
T ss_pred eeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc-cchhhh----ccccceeeee
Confidence 77776665443321000000 0 00000 00001111111111111111 001111 1123456666
Q ss_pred cccCCCCCccc-cccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCcccccCCCccEEEEecCcchh
Q 010089 331 IKDCNSLPLNL-LHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLTWLVFVPNLKWLQIFNCDDME 409 (518)
Q Consensus 331 l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~ 409 (518)
++++. +..++ +.+.+++.|+.|.++||.++. .|+.+..++.|++|...++ .+..+|.+.++|.|+.++++ |+++.
T Consensus 390 LsyNr-L~~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS-~N~L~ 465 (1081)
T KOG0618|consen 390 LSYNR-LNSFPASKLRKLEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSN-QLLSFPELAQLPQLKVLDLS-CNNLS 465 (1081)
T ss_pred ecccc-cccCCHHHHhchHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCC-ceeechhhhhcCcceEEecc-cchhh
Confidence 66642 34444 455566666666666666665 3455666666666665544 45556666777777777776 35555
Q ss_pred hhhcccchhccccccccCCCCccCCCcceeeccCCcc
Q 010089 410 EIISVEKFEKLGEVSEMMGEPILFSELELLVISNASN 446 (518)
Q Consensus 410 ~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 446 (518)
.+... ... .-|+|++|++++.+.
T Consensus 466 ~~~l~-------------~~~-p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 466 EVTLP-------------EAL-PSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhh-------------hhC-CCcccceeeccCCcc
Confidence 54320 011 116777777777554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.39 E-value=7.2e-13 Score=139.25 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=40.3
Q ss_pred CCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEE
Q 010089 185 SLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVL 264 (518)
Q Consensus 185 ~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L 264 (518)
+...|+++++ .++.+|..+. .+|+.|++++|+++.+|..+. .+|++|++++|.. ..+|.. + ..+|+.|
T Consensus 179 ~~~~L~L~~~-~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~L----tsLP~~-l--~~~L~~L 246 (754)
T PRK15370 179 NKTELRLKIL-GLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQL----TSIPAT-L--PDTIQEM 246 (754)
T ss_pred CceEEEeCCC-CcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcc----ccCChh-h--hccccEE
Confidence 3455666555 4555555443 356666666666666665443 3566666665543 455543 2 1345666
Q ss_pred eccccCC
Q 010089 265 RMLHCGS 271 (518)
Q Consensus 265 ~l~~~~~ 271 (518)
++++|..
T Consensus 247 ~Ls~N~L 253 (754)
T PRK15370 247 ELSINRI 253 (754)
T ss_pred ECcCCcc
Confidence 6665544
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.39 E-value=5.1e-15 Score=121.25 Aligned_cols=100 Identities=30% Similarity=0.416 Sum_probs=53.9
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCccc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEM 244 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l 244 (518)
+-+++|++..+|+. +..+++|++|++++| .++++|.+++.+++|+.|++.-+.+..+|.+++.++-|+.||+.+|+.-
T Consensus 38 LtLSHNKl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~ 115 (264)
T KOG0617|consen 38 LTLSHNKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLN 115 (264)
T ss_pred hhcccCceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccc
Confidence 44555555555555 555555555555555 5555555555555555555555555555555555555555555555432
Q ss_pred ccccCCchhhhcCCCCCcEEecccc
Q 010089 245 CKMCKIPEQLISSFSKLQVLRMLHC 269 (518)
Q Consensus 245 ~~~~~lp~~~~~~l~~L~~L~l~~~ 269 (518)
. ..+|.. +-.++.|+.|++.++
T Consensus 116 e--~~lpgn-ff~m~tlralyl~dn 137 (264)
T KOG0617|consen 116 E--NSLPGN-FFYMTTLRALYLGDN 137 (264)
T ss_pred c--ccCCcc-hhHHHHHHHHHhcCC
Confidence 1 334443 344444555554443
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.36 E-value=1.7e-13 Score=139.54 Aligned_cols=92 Identities=17% Similarity=0.144 Sum_probs=55.1
Q ss_pred ccccccEEEEecCCCCCCCc-ccccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCcccc
Q 010089 370 EVQKMLKLHFVNCSNVKDLT-WLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLK 448 (518)
Q Consensus 370 ~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~ 448 (518)
...+|++++++.. .+..+| |++.+++|+.+.+..+. +..++. .+....+|+.|....| .++
T Consensus 239 ~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~---------------ri~~~~~L~~l~~~~n-el~ 300 (1081)
T KOG0618|consen 239 VPLNLQYLDISHN-NLSNLPEWIGACANLEALNANHNR-LVALPL---------------RISRITSLVSLSAAYN-ELE 300 (1081)
T ss_pred ccccceeeecchh-hhhcchHHHHhcccceEecccchh-HHhhHH---------------HHhhhhhHHHHHhhhh-hhh
Confidence 3456777777765 445554 67777777777776633 344332 3334556666666664 566
Q ss_pred ccCCCCCCCCCcceEeccCCCCCcCCCCCCCC
Q 010089 449 RIYRDPLPFPHLERIGISECPKLKKLPLNSSS 480 (518)
Q Consensus 449 ~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~ 480 (518)
.+|.....+.+|+.|+++.. +|..+|.....
T Consensus 301 yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~ 331 (1081)
T KOG0618|consen 301 YIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLA 331 (1081)
T ss_pred hCCCcccccceeeeeeehhc-cccccchHHHh
Confidence 66665566667777777653 66666664433
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.32 E-value=5.2e-14 Score=115.39 Aligned_cols=161 Identities=24% Similarity=0.372 Sum_probs=120.5
Q ss_pred hCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCC
Q 010089 180 FQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFS 259 (518)
Q Consensus 180 ~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~ 259 (518)
+-++.+...|-+++| .+..+|..|..+.+|+.|++++++++++|.+++.|++|++|+++-|+. ..+|.+ ++.++
T Consensus 29 Lf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl----~~lprg-fgs~p 102 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL----NILPRG-FGSFP 102 (264)
T ss_pred ccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh----hcCccc-cCCCc
Confidence 446788888999999 788999999999999999999999999999999999999999998865 789998 99999
Q ss_pred CCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhhccceeecccCCCCCc
Q 010089 260 KLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPL 339 (518)
Q Consensus 260 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~ 339 (518)
.|+.|++..+..++ ...+.. .-.++. |+.|+++++ +++.
T Consensus 103 ~levldltynnl~e-----------~~lpgn---ff~m~t--------------------------lralyl~dn-dfe~ 141 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNE-----------NSLPGN---FFYMTT--------------------------LRALYLGDN-DFEI 141 (264)
T ss_pred hhhhhhcccccccc-----------ccCCcc---hhHHHH--------------------------HHHHHhcCC-Cccc
Confidence 99999998876532 112222 222222 334444443 3455
Q ss_pred cccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCc
Q 010089 340 NLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT 389 (518)
Q Consensus 340 ~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 389 (518)
++..++++++|+.|.+..+.+-+ .|..++.+..|+.|.+.+. .+..+|
T Consensus 142 lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgn-rl~vlp 189 (264)
T KOG0617|consen 142 LPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGN-RLTVLP 189 (264)
T ss_pred CChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccc-eeeecC
Confidence 56667777788888887774433 5666777888888888776 444444
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.27 E-value=2.9e-12 Score=136.85 Aligned_cols=289 Identities=23% Similarity=0.269 Sum_probs=177.6
Q ss_pred heeecccc-cccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCC-cCCccchhhhcCCCCcEeeccC
Q 010089 163 GTLLLEYN-HIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSST-KVRGLPQELKALVNLRYLNLDY 240 (518)
Q Consensus 163 ~~l~l~~~-~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~ 240 (518)
+++++++| .+.++|.. ++++-+||+|+++++ .+..+|.++++|+.|.||++..+ .+..+|.....|++||+|.+..
T Consensus 574 rVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 574 RVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred EEEECCCCCccCcCChH-HhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 34888865 45677776 999999999999999 89999999999999999999998 4555666677799999999987
Q ss_pred CcccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEe-cCccccccccC
Q 010089 241 TNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLR-GSRGVENFLKF 319 (518)
Q Consensus 241 ~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~-~~~~~~~l~~~ 319 (518)
... ......++.+.+|++|....+.... . ..+..+..+..|..+..... ...........
T Consensus 652 s~~-----~~~~~~l~el~~Le~L~~ls~~~~s-------------~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~ 712 (889)
T KOG4658|consen 652 SAL-----SNDKLLLKELENLEHLENLSITISS-------------V-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISS 712 (889)
T ss_pred ccc-----ccchhhHHhhhcccchhhheeecch-------------h-HhHhhhhhhHHHHHHhHhhhhcccccceeecc
Confidence 641 1111225555666666655544311 1 22222333333332211111 11122222222
Q ss_pred cchhhccceeecccCCCCCccccc-----cc-cccccceEEeccC-cCccccccCccccccccEEEEecCCCCCCCc-cc
Q 010089 320 PKLQNITQALHIKDCNSLPLNLLH-----LA-NMEHLQLFSIWDS-NLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT-WL 391 (518)
Q Consensus 320 ~~l~~~L~~L~l~~~~~~~~~~~~-----l~-~l~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~l 391 (518)
......++.|.+.+|...+..... .. .++++..+.+..| ... .+.|....++|+.|.+..|+..+.+. ..
T Consensus 713 ~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r--~l~~~~f~~~L~~l~l~~~~~~e~~i~~~ 790 (889)
T KOG4658|consen 713 LGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLR--DLTWLLFAPHLTSLSLVSCRLLEDIIPKL 790 (889)
T ss_pred cccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccc--ccchhhccCcccEEEEecccccccCCCHH
Confidence 333456789999988754332211 11 1446666666666 555 56777788999999999998887754 44
Q ss_pred ccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCCC----CCCCCcceEeccC
Q 010089 392 VFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRDP----LPFPHLERIGISE 467 (518)
Q Consensus 392 ~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~----~~~~~L~~L~i~~ 467 (518)
..+..++.+.+.. ....... .....++|+++..+.+.+. .++++.... +.+|.+.++.+.+
T Consensus 791 k~~~~l~~~i~~f-~~~~~l~-------------~~~~l~~l~~i~~~~l~~~-~l~~~~ve~~p~l~~~P~~~~~~i~~ 855 (889)
T KOG4658|consen 791 KALLELKELILPF-NKLEGLR-------------MLCSLGGLPQLYWLPLSFL-KLEELIVEECPKLGKLPLLSTLTIVG 855 (889)
T ss_pred HHhhhcccEEecc-cccccce-------------eeecCCCCceeEecccCcc-chhheehhcCcccccCccccccceec
Confidence 5555555533332 2222221 0114445555555555553 255544433 5678899999999
Q ss_pred C-CCCcCCCCCCCCCCCcceEEEchhhh
Q 010089 468 C-PKLKKLPLNSSSAKGRKIVIYGEKEW 494 (518)
Q Consensus 468 C-~~L~~lp~~~~~~~~~l~~~~~~~~~ 494 (518)
| +++..+|.+.. ++.+.+..+.
T Consensus 856 ~~~~~~~~~~~~~-----~~~v~~~~~~ 878 (889)
T KOG4658|consen 856 CEEKLKEYPDGEW-----LEGVYWEDEL 878 (889)
T ss_pred cccceeecCCccc-----eeeEEehhhh
Confidence 7 99999998742 4555555443
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.20 E-value=5.9e-12 Score=122.30 Aligned_cols=87 Identities=28% Similarity=0.222 Sum_probs=51.9
Q ss_pred hCCCCCCcEEEeecCCCc-----CccCccccCccccCEEecCCCcCCc-------cchhhhcCCCCcEeeccCCcccccc
Q 010089 180 FQSLPSLRVLNLSVNHYL-----TELPVGISSLVSLHHLDLSSTKVRG-------LPQELKALVNLRYLNLDYTNEMCKM 247 (518)
Q Consensus 180 ~~~l~~Lr~L~L~~~~~~-----~~lp~~i~~L~~L~~L~l~~~~l~~-------lp~~i~~L~~L~~L~l~~~~~l~~~ 247 (518)
+..+..|++|+++++ .+ ..++..+...+.|++|+++++.+.. ++..+.++++|+.|++++|...
T Consensus 19 ~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--- 94 (319)
T cd00116 19 LPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG--- 94 (319)
T ss_pred HHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC---
Confidence 555666777777777 33 2345555566667777777765542 3445666777777777777552
Q ss_pred cCCchhhhcCCCC---CcEEeccccCC
Q 010089 248 CKIPEQLISSFSK---LQVLRMLHCGS 271 (518)
Q Consensus 248 ~~lp~~~~~~l~~---L~~L~l~~~~~ 271 (518)
...+.. +..+.+ |++|++.+|..
T Consensus 95 ~~~~~~-~~~l~~~~~L~~L~ls~~~~ 120 (319)
T cd00116 95 PDGCGV-LESLLRSSSLQELKLNNNGL 120 (319)
T ss_pred hhHHHH-HHHHhccCcccEEEeeCCcc
Confidence 222222 333333 77777777654
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.03 E-value=1.5e-10 Score=112.49 Aligned_cols=129 Identities=23% Similarity=0.255 Sum_probs=80.5
Q ss_pred eeccccccc-----ccChhhhCCCCCCcEEEeecCCCcC-------ccCccccCccccCEEecCCCcCCc-cchhhhcCC
Q 010089 165 LLLEYNHIE-----EITESFFQSLPSLRVLNLSVNHYLT-------ELPVGISSLVSLHHLDLSSTKVRG-LPQELKALV 231 (518)
Q Consensus 165 l~l~~~~i~-----~~~~~~~~~l~~Lr~L~L~~~~~~~-------~lp~~i~~L~~L~~L~l~~~~l~~-lp~~i~~L~ 231 (518)
+.+.++.+. .++. .+...+.|+.|+++++ .+. .++..+..+.+|++|++++|.+.. .+..+..+.
T Consensus 28 l~l~~~~l~~~~~~~i~~-~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 105 (319)
T cd00116 28 LRLEGNTLGEEAAKALAS-ALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLL 105 (319)
T ss_pred EeecCCCCcHHHHHHHHH-HHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHh
Confidence 566666653 2333 3667788999999887 333 234556778899999999998764 555565555
Q ss_pred C---CcEeeccCCcccc-cccCCchhhhcCC-CCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEE
Q 010089 232 N---LRYLNLDYTNEMC-KMCKIPEQLISSF-SKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALS 306 (518)
Q Consensus 232 ~---L~~L~l~~~~~l~-~~~~lp~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~ 306 (518)
+ |++|++++|.... ....+... +..+ ++|+.|++.+|.... .........+..+++|+.+++.
T Consensus 106 ~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~-----------~~~~~~~~~~~~~~~L~~L~l~ 173 (319)
T cd00116 106 RSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEG-----------ASCEALAKALRANRDLKELNLA 173 (319)
T ss_pred ccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCc-----------hHHHHHHHHHHhCCCcCEEECc
Confidence 5 9999999986420 00112222 5566 899999999987632 1122333444555556655554
Q ss_pred E
Q 010089 307 L 307 (518)
Q Consensus 307 ~ 307 (518)
.
T Consensus 174 ~ 174 (319)
T cd00116 174 N 174 (319)
T ss_pred C
Confidence 3
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.89 E-value=4.9e-10 Score=104.21 Aligned_cols=261 Identities=17% Similarity=0.243 Sum_probs=150.9
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCc-cccCccccCEEecCCCcCCcc-chhhhcCCCCcEeeccCCc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLHHLDLSSTKVRGL-PQELKALVNLRYLNLDYTN 242 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~ 242 (518)
++-.+.++.++|...- ..-..++|..| .++.+|+ .|+.+++||.|||++|.|+.+ |..+..+.+|-.|-+.+++
T Consensus 51 VdCr~~GL~eVP~~LP---~~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLP---PETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred EEccCCCcccCcccCC---CcceEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 4555566777776522 33456888899 7888765 589999999999999999995 7789999999888888855
Q ss_pred ccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcch
Q 010089 243 EMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKL 322 (518)
Q Consensus 243 ~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l 322 (518)
.+ ..+|.+.+.+|..|+.|.+.-+...- .....+.+++++.-|...+..+..... ..+..
T Consensus 127 kI---~~l~k~~F~gL~slqrLllNan~i~C------------ir~~al~dL~~l~lLslyDn~~q~i~~-~tf~~---- 186 (498)
T KOG4237|consen 127 KI---TDLPKGAFGGLSSLQRLLLNANHINC------------IRQDALRDLPSLSLLSLYDNKIQSICK-GTFQG---- 186 (498)
T ss_pred ch---hhhhhhHhhhHHHHHHHhcChhhhcc------------hhHHHHHHhhhcchhcccchhhhhhcc-ccccc----
Confidence 55 89999999999999999887665532 234455555555444433332221100 00111
Q ss_pred hhccceeecccCCCC-----C-------ccccccccccccceEEecc-------------------------CcCccc-c
Q 010089 323 QNITQALHIKDCNSL-----P-------LNLLHLANMEHLQLFSIWD-------------------------SNLEDW-N 364 (518)
Q Consensus 323 ~~~L~~L~l~~~~~~-----~-------~~~~~l~~l~~L~~L~l~~-------------------------~~l~~~-~ 364 (518)
...++.+++..++.+ . ..+..++.++-.....+.. +..... +
T Consensus 187 l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP 266 (498)
T KOG4237|consen 187 LAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICP 266 (498)
T ss_pred hhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcCh
Confidence 122334443332210 0 0001111111111111111 111111 1
Q ss_pred ccCccccccccEEEEecCCCCCCCc--ccccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeecc
Q 010089 365 VDCAGEVQKMLKLHFVNCSNVKDLT--WLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVIS 442 (518)
Q Consensus 365 ~~~~~~l~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~ 442 (518)
...+..+++|++|+++++ .++.+. ++..+..+++|+|.. ++++.+.. ..+.++..|+.|.++
T Consensus 267 ~~cf~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~--------------~~f~~ls~L~tL~L~ 330 (498)
T KOG4237|consen 267 AKCFKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTR-NKLEFVSS--------------GMFQGLSGLKTLSLY 330 (498)
T ss_pred HHHHhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCc-chHHHHHH--------------Hhhhccccceeeeec
Confidence 122556777777777776 455443 666777777777776 34555433 145567788888888
Q ss_pred CCccccccCC-CCCCCCCcceEecc
Q 010089 443 NASNLKRIYR-DPLPFPHLERIGIS 466 (518)
Q Consensus 443 ~~~~l~~l~~-~~~~~~~L~~L~i~ 466 (518)
+. .++.+.. ......+|.+|.+-
T Consensus 331 ~N-~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 331 DN-QITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred CC-eeEEEecccccccceeeeeehc
Confidence 73 5655532 33445566666653
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.4e-09 Score=102.61 Aligned_cols=204 Identities=18% Similarity=0.188 Sum_probs=130.8
Q ss_pred CCCCCCcEEEeecCCCcCccC--ccccCccccCEEecCCCcCCc---cchhhhcCCCCcEeeccCCcccccccCCchhhh
Q 010089 181 QSLPSLRVLNLSVNHYLTELP--VGISSLVSLHHLDLSSTKVRG---LPQELKALVNLRYLNLDYTNEMCKMCKIPEQLI 255 (518)
Q Consensus 181 ~~l~~Lr~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~l~~---lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~ 255 (518)
+++++||...|.++ .+...+ +....+++++.|||++|-+.. +-.-...|++|+.|+++.|... .-.....-
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~---~~~~s~~~ 193 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS---NFISSNTT 193 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc---CCccccch
Confidence 56788899999888 666655 356778999999999985554 4445678999999999998764 22222223
Q ss_pred cCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhhccceeecccCC
Q 010089 256 SSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCN 335 (518)
Q Consensus 256 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~ 335 (518)
..++.|+.|.+..|+.+. .....-+...++|..+.+..+..... .....+....|+.|+|++++
T Consensus 194 ~~l~~lK~L~l~~CGls~--------------k~V~~~~~~fPsl~~L~L~~N~~~~~--~~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSW--------------KDVQWILLTFPSLEVLYLEANEIILI--KATSTKILQTLQELDLSNNN 257 (505)
T ss_pred hhhhhhheEEeccCCCCH--------------HHHHHHHHhCCcHHHhhhhcccccce--ecchhhhhhHHhhccccCCc
Confidence 467889999999998842 22223334445555555543321111 11222344557888888876
Q ss_pred CCCccc-cccccccccceEEeccCcCccc-cccC-----ccccccccEEEEecCCC--CCCCcccccCCCccEEEEec
Q 010089 336 SLPLNL-LHLANMEHLQLFSIWDSNLEDW-NVDC-----AGEVQKMLKLHFVNCSN--VKDLTWLVFVPNLKWLQIFN 404 (518)
Q Consensus 336 ~~~~~~-~~l~~l~~L~~L~l~~~~l~~~-~~~~-----~~~l~~L~~L~l~~c~~--l~~l~~l~~l~~L~~L~L~~ 404 (518)
.+.... .....++.|+.|+++.+++.++ .|+. ...+++|+.|.+..++- +.++..+..+++|+.|.+..
T Consensus 258 li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 258 LIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred ccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 543322 4566788888888888877654 2332 34588888888877654 44555555677777777543
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.77 E-value=8.3e-09 Score=88.70 Aligned_cols=100 Identities=34% Similarity=0.458 Sum_probs=42.7
Q ss_pred eecccccccccChhhhC-CCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhh-hcCCCCcEeeccCCc
Q 010089 165 LLLEYNHIEEITESFFQ-SLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQEL-KALVNLRYLNLDYTN 242 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~-~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~l~~~~ 242 (518)
+++.+|.|..+.. ++ .+.+|++|++++| .++.++ .+..+++|++|++++|.|+++++.+ ..+++|++|++++|+
T Consensus 24 L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~ 99 (175)
T PF14580_consen 24 LNLRGNQISTIEN--LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNK 99 (175)
T ss_dssp ------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS-
T ss_pred ccccccccccccc--hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCc
Confidence 8899999988754 55 6889999999999 788886 6888999999999999999997766 469999999999987
Q ss_pred ccccccCCchhhhcCCCCCcEEeccccCC
Q 010089 243 EMCKMCKIPEQLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 243 ~l~~~~~lp~~~~~~l~~L~~L~l~~~~~ 271 (518)
.- ....+-. +..+++|++|++.+|..
T Consensus 100 I~-~l~~l~~--L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 100 IS-DLNELEP--LSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp ---SCCCCGG--GGG-TT--EEE-TT-GG
T ss_pred CC-ChHHhHH--HHcCCCcceeeccCCcc
Confidence 62 1233333 77899999999998876
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.64 E-value=4.5e-08 Score=98.01 Aligned_cols=189 Identities=25% Similarity=0.376 Sum_probs=111.3
Q ss_pred ecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCcc-ccCEEecCCCcCCccchhhhcCCCCcEeeccCCccc
Q 010089 166 LLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLV-SLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEM 244 (518)
Q Consensus 166 ~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~-~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l 244 (518)
.+..+.+...... +..++.+..|++.++ .+..+|...+.+. +|+.|+++++.+..+|..++.+++|+.|++++|..
T Consensus 99 ~~~~~~~~~~~~~-~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l- 175 (394)
T COG4886 99 DLNLNRLRSNISE-LLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL- 175 (394)
T ss_pred eccccccccCchh-hhcccceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchh-
Confidence 3444444232222 455577888888888 7788887777774 88888888888888887788888888888888866
Q ss_pred ccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhh
Q 010089 245 CKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQN 324 (518)
Q Consensus 245 ~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~ 324 (518)
..+|.. .+.+++|+.|++.++.... .+..++. +..|
T Consensus 176 ---~~l~~~-~~~~~~L~~L~ls~N~i~~-------------l~~~~~~---~~~L------------------------ 211 (394)
T COG4886 176 ---SDLPKL-LSNLSNLNNLDLSGNKISD-------------LPPEIEL---LSAL------------------------ 211 (394)
T ss_pred ---hhhhhh-hhhhhhhhheeccCCcccc-------------Cchhhhh---hhhh------------------------
Confidence 677774 4477888888888776632 2221111 1112
Q ss_pred ccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCcccccCCCccEEEEec
Q 010089 325 ITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLTWLVFVPNLKWLQIFN 404 (518)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~L~~ 404 (518)
+++.+.++. ....+..+..+.++..+.+.++.+.. .+..++.+++++.|+++++ .+..++.++.+.+|+.|++++
T Consensus 212 --~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~ 286 (394)
T COG4886 212 --EELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNN-QISSISSLGSLTNLRELDLSG 286 (394)
T ss_pred --hhhhhcCCc-ceecchhhhhcccccccccCCceeee-ccchhccccccceeccccc-cccccccccccCccCEEeccC
Confidence 222222221 11122334444455555544444432 2444555666666666655 445555555666666666665
Q ss_pred Cc
Q 010089 405 CD 406 (518)
Q Consensus 405 c~ 406 (518)
..
T Consensus 287 n~ 288 (394)
T COG4886 287 NS 288 (394)
T ss_pred cc
Confidence 43
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.63 E-value=2.2e-08 Score=86.04 Aligned_cols=96 Identities=29% Similarity=0.378 Sum_probs=30.1
Q ss_pred ccccccccChhhhCCCCCCcEEEeecCCCcCccCcccc-CccccCEEecCCCcCCccchhhhcCCCCcEeeccCCccccc
Q 010089 168 EYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGIS-SLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCK 246 (518)
Q Consensus 168 ~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~-~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~ 246 (518)
..+.|++.+. +.+...+|.|+|+++ .+..+. .++ .+.+|+.|++++|.|+.++ ++..+++|++|++++|..
T Consensus 5 t~~~i~~~~~--~~n~~~~~~L~L~~n-~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I--- 76 (175)
T PF14580_consen 5 TANMIEQIAQ--YNNPVKLRELNLRGN-QISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRI--- 76 (175)
T ss_dssp -----------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS-----
T ss_pred cccccccccc--ccccccccccccccc-cccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCC---
Confidence 3344555554 567778999999999 677664 566 5889999999999999985 688899999999999976
Q ss_pred ccCCchhhhcCCCCCcEEeccccCCC
Q 010089 247 MCKIPEQLISSFSKLQVLRMLHCGSN 272 (518)
Q Consensus 247 ~~~lp~~~~~~l~~L~~L~l~~~~~~ 272 (518)
..++..+...+++|++|++.+|...
T Consensus 77 -~~i~~~l~~~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 77 -SSISEGLDKNLPNLQELYLSNNKIS 101 (175)
T ss_dssp --S-CHHHHHH-TT--EEE-TTS---
T ss_pred -CccccchHHhCCcCCEEECcCCcCC
Confidence 6776653357999999999998773
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.57 E-value=2.9e-09 Score=100.01 Aligned_cols=142 Identities=16% Similarity=0.236 Sum_probs=76.9
Q ss_pred hhhccceeecccCCCCCccc--cccccccccceEEeccC-cCccccccCc-cccccccEEEEecCCCCCCC--cc-cccC
Q 010089 322 LQNITQALHIKDCNSLPLNL--LHLANMEHLQLFSIWDS-NLEDWNVDCA-GEVQKMLKLHFVNCSNVKDL--TW-LVFV 394 (518)
Q Consensus 322 l~~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~-~l~~~~~~~~-~~l~~L~~L~l~~c~~l~~l--~~-l~~l 394 (518)
....++.|+.++|.+.+... +--....+|+.|-+.+| .+++.....+ .+.+.|+.+++..|.....- -. -..+
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 34456677777766554433 22234566777777777 5543322222 34566777777766433322 11 1246
Q ss_pred CCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCC-CCCCCCCcceEeccCCCCCcC
Q 010089 395 PNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYR-DPLPFPHLERIGISECPKLKK 473 (518)
Q Consensus 395 ~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~i~~C~~L~~ 473 (518)
|.|+.|.++.|..+.+... . .+.....+...|+.+.+.+|+.+.+-.. ....+++|+++++.+|....+
T Consensus 372 ~~lr~lslshce~itD~gi-~---------~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGI-R---------HLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred chhccCChhhhhhhhhhhh-h---------hhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 7777777777766655311 0 0111334556677777777776543221 233456777777777766654
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.57 E-value=1.6e-08 Score=90.90 Aligned_cols=124 Identities=13% Similarity=0.158 Sum_probs=77.5
Q ss_pred hccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCC-cccccCCCccEEEE
Q 010089 324 NITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDL-TWLVFVPNLKWLQI 402 (518)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~l~~l~~L~~L~L 402 (518)
.+|+.++++++. +..+.++..-.+.++.|+++.|++..+ +.+..+++|+.|+++++ .+..+ .|-..+.|.++|.+
T Consensus 284 q~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccc-hhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence 346667776653 344555666667777777777766632 33667777777777776 33333 35556777777777
Q ss_pred ecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCC--CCCCCCCcceEeccCCC
Q 010089 403 FNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYR--DPLPFPHLERIGISECP 469 (518)
Q Consensus 403 ~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~i~~C~ 469 (518)
.+ +.++.+. +++.+-+|..|++++. +++.+.. +++.+|+|+.+.+.+.|
T Consensus 360 a~-N~iE~LS----------------GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 360 AQ-NKIETLS----------------GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hh-hhHhhhh----------------hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 76 3455442 4556667777777763 4444432 56777777777777654
No 32
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.5e-09 Score=96.03 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=43.3
Q ss_pred cccceEEeccC--cCccccccC-ccccccccEEEEecCCCCCCC--cccccCCCccEEEEecCcchhhhhcccchhcccc
Q 010089 348 EHLQLFSIWDS--NLEDWNVDC-AGEVQKMLKLHFVNCSNVKDL--TWLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGE 422 (518)
Q Consensus 348 ~~L~~L~l~~~--~l~~~~~~~-~~~l~~L~~L~l~~c~~l~~l--~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~ 422 (518)
++|..|+++|+ .+....... ...+++|..|++++|..++.- ..+.+++.|++|.++.|..+.-
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p------------ 353 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIP------------ 353 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCCh------------
Confidence 45666666666 222111111 234666777777766555541 1344566777777777665432
Q ss_pred ccccCCCCccCCCcceeeccCC
Q 010089 423 VSEMMGEPILFSELELLVISNA 444 (518)
Q Consensus 423 l~~~~~~~~~~~~L~~L~l~~~ 444 (518)
+..-.+...|+|.+|++.+|
T Consensus 354 --~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 354 --ETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred --HHeeeeccCcceEEEEeccc
Confidence 11113445566666666665
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2e-08 Score=94.98 Aligned_cols=191 Identities=16% Similarity=0.166 Sum_probs=114.9
Q ss_pred CccCccccCccccCEEecCCCcCCccch--hhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCCCcc
Q 010089 198 TELPVGISSLVSLHHLDLSSTKVRGLPQ--ELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWP 275 (518)
Q Consensus 198 ~~lp~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~ 275 (518)
.++...-+++.+||...|+++.+...+. ....+++++.||++.|-.. .+..+ ..++..|++|+.|+++.|.....
T Consensus 111 Dki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v-~~i~eqLp~Le~LNls~Nrl~~~- 187 (505)
T KOG3207|consen 111 DKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH-NWFPV-LKIAEQLPSLENLNLSSNRLSNF- 187 (505)
T ss_pred HHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHH-hHHHH-HHHHHhcccchhcccccccccCC-
Confidence 3444455678899999999998887774 6788999999999988432 11112 23477889999999988765220
Q ss_pred ccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhhccceeecccCCCCCccccccccccccceEEe
Q 010089 276 IAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSI 355 (518)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 355 (518)
..... -..+.+|+.+.++.++.. .+++.......+.++.|++.++++.........-++.|+.|+|
T Consensus 188 -----------~~s~~--~~~l~~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdL 253 (505)
T KOG3207|consen 188 -----------ISSNT--TLLLSHLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDL 253 (505)
T ss_pred -----------ccccc--hhhhhhhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccc
Confidence 00000 114556666666655543 3333333333455677777776533222233444667888888
Q ss_pred ccCcCccc-cccCccccccccEEEEecCCCCCCC--cc------cccCCCccEEEEecCc
Q 010089 356 WDSNLEDW-NVDCAGEVQKMLKLHFVNCSNVKDL--TW------LVFVPNLKWLQIFNCD 406 (518)
Q Consensus 356 ~~~~l~~~-~~~~~~~l~~L~~L~l~~c~~l~~l--~~------l~~l~~L~~L~L~~c~ 406 (518)
++|.+-+. ...-.+.++.|+.|.++.| ++.++ |. ...+|+|+.|.+..++
T Consensus 254 s~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 254 SNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred cCCcccccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc
Confidence 88744331 1123566777777777776 33332 11 2457788888877644
No 34
>PLN03150 hypothetical protein; Provisional
Probab=98.49 E-value=3.1e-07 Score=96.59 Aligned_cols=102 Identities=26% Similarity=0.355 Sum_probs=62.7
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCc-cchhhhcCCCCcEeeccCCcc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRG-LPQELKALVNLRYLNLDYTNE 243 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l~~~~~ 243 (518)
++|.++.+....+..+.++++|+.|+|++|...+.+|..++.+.+|++|++++|.+.. +|..++++++|++|++++|..
T Consensus 423 L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502 (623)
T ss_pred EECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence 5566666654433346677777777777764445666667777777777777776663 666677777777777777665
Q ss_pred cccccCCchhhhcCCCCCcEEecccc
Q 010089 244 MCKMCKIPEQLISSFSKLQVLRMLHC 269 (518)
Q Consensus 244 l~~~~~lp~~~~~~l~~L~~L~l~~~ 269 (518)
. ..+|..+-..+.++..+++.+|
T Consensus 503 ~---g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 503 S---GRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred c---ccCChHHhhccccCceEEecCC
Confidence 4 5666652222345555555544
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.47 E-value=3.1e-08 Score=89.18 Aligned_cols=131 Identities=18% Similarity=0.146 Sum_probs=96.3
Q ss_pred hhcccccceEEEEEecCccccccccCcchhhccceeecccCCCCCccccccccccccceEEeccCcCccccccCcccccc
Q 010089 294 IHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQK 373 (518)
Q Consensus 294 l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~ 373 (518)
+..-+.|..++++++.. ..+....++...++.|+++.+. +..+ .++..+++|..|++++|.+.. .-.|-..+-|
T Consensus 280 ~dTWq~LtelDLS~N~I---~~iDESvKL~Pkir~L~lS~N~-i~~v-~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGN 353 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLI---TQIDESVKLAPKLRRLILSQNR-IRTV-QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGN 353 (490)
T ss_pred cchHhhhhhccccccch---hhhhhhhhhccceeEEeccccc-eeee-hhhhhcccceEeecccchhHh-hhhhHhhhcC
Confidence 33444555556655432 3334455666678899998865 2333 468889999999999997765 4556677899
Q ss_pred ccEEEEecCCCCCCCcccccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCc
Q 010089 374 MLKLHFVNCSNVKDLTWLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNAS 445 (518)
Q Consensus 374 L~~L~l~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 445 (518)
.++|.+.++ .++++..+..+-+|..|+++++ +++.+.. ..+++.+|.|+.+.+.+.|
T Consensus 354 IKtL~La~N-~iE~LSGL~KLYSLvnLDl~~N-~Ie~lde-------------V~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 354 IKTLKLAQN-KIETLSGLRKLYSLVNLDLSSN-QIEELDE-------------VNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred Eeeeehhhh-hHhhhhhhHhhhhheecccccc-chhhHHH-------------hcccccccHHHHHhhcCCC
Confidence 999999987 7888888999999999999984 4555432 2378999999999999864
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.46 E-value=1.1e-07 Score=95.26 Aligned_cols=172 Identities=26% Similarity=0.332 Sum_probs=124.0
Q ss_pred eecccccccccChhhhCCCC-CCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcc
Q 010089 165 LLLEYNHIEEITESFFQSLP-SLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNE 243 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~-~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 243 (518)
+++.++.+..+++. ...++ +|+.|+++++ .+..+|..++.+++|+.|++++|++.++|...+.+++|+.|+++++..
T Consensus 121 L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i 198 (394)
T COG4886 121 LDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKI 198 (394)
T ss_pred EecCCcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCcc
Confidence 88899999999886 56664 9999999999 889998899999999999999999999999888999999999999987
Q ss_pred cccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchh
Q 010089 244 MCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQ 323 (518)
Q Consensus 244 l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~ 323 (518)
..+|.. +..+.+|++|.+.++... .... .+..+.++..+.+....
T Consensus 199 ----~~l~~~-~~~~~~L~~l~~~~N~~~-------------~~~~---~~~~~~~l~~l~l~~n~-------------- 243 (394)
T COG4886 199 ----SDLPPE-IELLSALEELDLSNNSII-------------ELLS---SLSNLKNLSGLELSNNK-------------- 243 (394)
T ss_pred ----ccCchh-hhhhhhhhhhhhcCCcce-------------ecch---hhhhcccccccccCCce--------------
Confidence 889985 567777999999887421 1222 23333333333211110
Q ss_pred hccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCC
Q 010089 324 NITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDL 388 (518)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l 388 (518)
+...+..+..+.+++.|+++++.+..+.. ++.+.+|+.|++++......+
T Consensus 244 -------------~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 244 -------------LEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred -------------eeeccchhccccccceecccccccccccc--ccccCccCEEeccCccccccc
Confidence 11112445556667777777776665433 667777777777765443333
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.46 E-value=9.3e-09 Score=100.25 Aligned_cols=187 Identities=23% Similarity=0.271 Sum_probs=122.4
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCccc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEM 244 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l 244 (518)
.+++.|++..+|.. +..+..|..+.++.| .+..+|..++++..|.||+++.|++..+|..+..|+ |+.|-+++|+.
T Consensus 80 aDlsrNR~~elp~~-~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl- 155 (722)
T KOG0532|consen 80 ADLSRNRFSELPEE-ACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKL- 155 (722)
T ss_pred hhccccccccCchH-HHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCcc-
Confidence 56777777777776 667777777777777 677788888888888888888888888888777665 77777777765
Q ss_pred ccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCcccc-ccccCcchh
Q 010089 245 CKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVE-NFLKFPKLQ 323 (518)
Q Consensus 245 ~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~-~l~~~~~l~ 323 (518)
+.+|.+ ++.+..|.+|+.+.|.. ......+..|..|+.+++.-+....+. ++..
T Consensus 156 ---~~lp~~-ig~~~tl~~ld~s~nei----------------~slpsql~~l~slr~l~vrRn~l~~lp~El~~----- 210 (722)
T KOG0532|consen 156 ---TSLPEE-IGLLPTLAHLDVSKNEI----------------QSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS----- 210 (722)
T ss_pred ---ccCCcc-cccchhHHHhhhhhhhh----------------hhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC-----
Confidence 778877 77777788888877654 223334444445554444332221111 1111
Q ss_pred hccceeecccCCCCCccccccccccccceEEeccCcCccccccCcc---ccccccEEEEecC
Q 010089 324 NITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAG---EVQKMLKLHFVNC 382 (518)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~---~l~~L~~L~l~~c 382 (518)
-.|..|+++. +.+..+|..+..|++|+.|-|.+|-+++ +|-.+. ...=.+.|++..|
T Consensus 211 LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 211 LPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred Cceeeeeccc-CceeecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhc
Confidence 1256677764 4567777888888899999988887774 333322 1222456666666
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.46 E-value=1e-08 Score=96.31 Aligned_cols=284 Identities=19% Similarity=0.198 Sum_probs=158.3
Q ss_pred CCcEEEeecCCCcCc--cCccccCccccCEEecCCC-cCCc--cchhhhcCCCCcEeeccCCcccccccCCchhhhcCCC
Q 010089 185 SLRVLNLSVNHYLTE--LPVGISSLVSLHHLDLSST-KVRG--LPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFS 259 (518)
Q Consensus 185 ~Lr~L~L~~~~~~~~--lp~~i~~L~~L~~L~l~~~-~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~ 259 (518)
.||.|.++|+..... +-..-...++++.|.+.+| ++++ +-.--.++.+|++|++..|..+. ...-..+...++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT--~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT--DVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH--HHHHHHHHHhhh
Confidence 456666666633322 1122344566666666666 4443 22222456677777777765541 111122355667
Q ss_pred CCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhhccceeecccCCCCCc
Q 010089 260 KLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPL 339 (518)
Q Consensus 260 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~ 339 (518)
+|++|+++-|..-.. ......... .+.++.+..+.+.....+.+.........+..+++..|..+++
T Consensus 217 kL~~lNlSwc~qi~~----------~gv~~~~rG---~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD 283 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISG----------NGVQALQRG---CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTD 283 (483)
T ss_pred hHHHhhhccCchhhc----------CcchHHhcc---chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccc
Confidence 777777776643110 001111111 2222222222222222222222222222345566667765555
Q ss_pred cc--cccccccccceEEeccC-cCccccccC-ccccccccEEEEecCCCCCCCc--cc-ccCCCccEEEEecCcchhhhh
Q 010089 340 NL--LHLANMEHLQLFSIWDS-NLEDWNVDC-AGEVQKMLKLHFVNCSNVKDLT--WL-VFVPNLKWLQIFNCDDMEEII 412 (518)
Q Consensus 340 ~~--~~l~~l~~L~~L~l~~~-~l~~~~~~~-~~~l~~L~~L~l~~c~~l~~l~--~l-~~l~~L~~L~L~~c~~l~~~~ 412 (518)
.. ..-..+..|+.|..+++ .+.+..... ....++|+.|.+..|..+.+.- .+ .+.+.|+.+++.+|..+.+-
T Consensus 284 ~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~- 362 (483)
T KOG4341|consen 284 EDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG- 362 (483)
T ss_pred hHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh-
Confidence 43 22334678899999888 655432222 2457899999999998776543 23 34889999999998776553
Q ss_pred cccchhccccccccCCCCccCCCcceeeccCCcccccc-----CCCCCCCCCcceEeccCCCCCcCCC-CCCCCCC--Cc
Q 010089 413 SVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRI-----YRDPLPFPHLERIGISECPKLKKLP-LNSSSAK--GR 484 (518)
Q Consensus 413 ~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~~~~~~L~~L~i~~C~~L~~lp-~~~~~~~--~~ 484 (518)
.+.....++|.|+.|.+++|..+..- ..+..++..|+.+++++||.++.-- ..+.... +.
T Consensus 363 ------------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler 430 (483)
T KOG4341|consen 363 ------------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER 430 (483)
T ss_pred ------------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccce
Confidence 12224567899999999999877654 3344567889999999999887522 1222222 55
Q ss_pred ceEEEchhhhhc
Q 010089 485 KIVIYGEKEWWE 496 (518)
Q Consensus 485 l~~~~~~~~~~~ 496 (518)
+..++|..-..+
T Consensus 431 i~l~~~q~vtk~ 442 (483)
T KOG4341|consen 431 IELIDCQDVTKE 442 (483)
T ss_pred eeeechhhhhhh
Confidence 667777743333
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.42 E-value=2.6e-07 Score=65.03 Aligned_cols=56 Identities=43% Similarity=0.648 Sum_probs=32.2
Q ss_pred CCcEEEeecCCCcCccC-ccccCccccCEEecCCCcCCccch-hhhcCCCCcEeeccCC
Q 010089 185 SLRVLNLSVNHYLTELP-VGISSLVSLHHLDLSSTKVRGLPQ-ELKALVNLRYLNLDYT 241 (518)
Q Consensus 185 ~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~ 241 (518)
+|++|++++| .+..+| ..+..+++|++|++++|.++.+|+ .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4566666666 455554 245556666666666666655543 4456666666666655
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=2.9e-08 Score=89.28 Aligned_cols=182 Identities=20% Similarity=0.195 Sum_probs=106.5
Q ss_pred ccCEEecCCCcCCc--cchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcch
Q 010089 209 SLHHLDLSSTKVRG--LPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDD 286 (518)
Q Consensus 209 ~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 286 (518)
.|++|||+.+.|+. +..-+..+.+|+.|.+.+.+.- ..+... +.+-.+|+.|+++.|....
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld---D~I~~~-iAkN~~L~~lnlsm~sG~t------------- 248 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD---DPIVNT-IAKNSNLVRLNLSMCSGFT------------- 248 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC---cHHHHH-Hhccccceeeccccccccc-------------
Confidence 46777777666554 4444566667777777766542 333333 5566677777777665411
Q ss_pred hhhhHHHhhcccccceEEEEEecCccccccccCcchhhccceeecccCCC-CCc--cccccccccccceEEeccC-cCcc
Q 010089 287 AESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNS-LPL--NLLHLANMEHLQLFSIWDS-NLED 362 (518)
Q Consensus 287 ~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~-~~~--~~~~l~~l~~L~~L~l~~~-~l~~ 362 (518)
....---+.+++.|..+++++++...-..-.-.....+.+..|+++|+.. +.. +..-...+++|..|+++.| .++.
T Consensus 249 ~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 249 ENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred hhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc
Confidence 11111223455555555665554322111111123345577788887742 111 1122345889999999998 7765
Q ss_pred ccccCccccccccEEEEecCCCCCC--CcccccCCCccEEEEecCcc
Q 010089 363 WNVDCAGEVQKMLKLHFVNCSNVKD--LTWLVFVPNLKWLQIFNCDD 407 (518)
Q Consensus 363 ~~~~~~~~l~~L~~L~l~~c~~l~~--l~~l~~l~~L~~L~L~~c~~ 407 (518)
.....+..++.|++|.++.|..+.- +-.+...|+|.+|++.+|-.
T Consensus 329 ~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 329 DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 4444456788999999999876532 22456789999999998743
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.37 E-value=2.8e-07 Score=64.85 Aligned_cols=59 Identities=31% Similarity=0.461 Sum_probs=53.2
Q ss_pred cccCEEecCCCcCCccch-hhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccC
Q 010089 208 VSLHHLDLSSTKVRGLPQ-ELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCG 270 (518)
Q Consensus 208 ~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~ 270 (518)
++|++|++++|+++.+|. .+..+++|++|++++|.. ..++++.+..+++|++|++.+|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l----~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL----TSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSE----SEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc----CccCHHHHcCCCCCCEEeCcCCc
Confidence 479999999999999985 678999999999999876 78888879999999999999875
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.28 E-value=4.3e-08 Score=95.74 Aligned_cols=215 Identities=19% Similarity=0.217 Sum_probs=141.8
Q ss_pred hhheeecccccccccChhhhC-CCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeecc
Q 010089 161 WEGTLLLEYNHIEEITESFFQ-SLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLD 239 (518)
Q Consensus 161 ~~~~l~l~~~~i~~~~~~~~~-~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~ 239 (518)
..+.+.|.+-+++.+|-..+. .+.--...|++.| ...++|..++.+..|+.+.++.|.+..+|..+.++..|.+||++
T Consensus 51 ~sg~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls 129 (722)
T KOG0532|consen 51 YSGRLLLSGRRLKEFPRGAASYDLTDTVFADLSRN-RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLS 129 (722)
T ss_pred hhcccccccchhhcCCCccccccccchhhhhcccc-ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhc
Confidence 344477777778777755443 2333355789999 78899999999999999999999999999999999999999999
Q ss_pred CCcccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccC
Q 010089 240 YTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKF 319 (518)
Q Consensus 240 ~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~ 319 (518)
.|+. ..+|.. +..|+ |+.|-++++.... .+..++ .+.+|..++.+.+.... ++.-
T Consensus 130 ~Nql----S~lp~~-lC~lp-Lkvli~sNNkl~~-------------lp~~ig---~~~tl~~ld~s~nei~s---lpsq 184 (722)
T KOG0532|consen 130 SNQL----SHLPDG-LCDLP-LKVLIVSNNKLTS-------------LPEEIG---LLPTLAHLDVSKNEIQS---LPSQ 184 (722)
T ss_pred cchh----hcCChh-hhcCc-ceeEEEecCcccc-------------CCcccc---cchhHHHhhhhhhhhhh---chHH
Confidence 9987 789987 77775 9999999887743 333333 33344444443332211 1111
Q ss_pred cchhhccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCcc-c---ccCC
Q 010089 320 PKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLTW-L---VFVP 395 (518)
Q Consensus 320 ~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-l---~~l~ 395 (518)
......++.|.+..+. +..++..+..+ .|..|+++.|++.. .|-.+..+..|++|.|.++ -++++|. + +..-
T Consensus 185 l~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfScNkis~-iPv~fr~m~~Lq~l~LenN-PLqSPPAqIC~kGkVH 260 (722)
T KOG0532|consen 185 LGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCNKISY-LPVDFRKMRHLQVLQLENN-PLQSPPAQICEKGKVH 260 (722)
T ss_pred hhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecccCceee-cchhhhhhhhheeeeeccC-CCCCChHHHHhcccee
Confidence 1222345556665543 34444444433 37778888777775 4555777888888888766 4555552 2 2223
Q ss_pred CccEEEEecC
Q 010089 396 NLKWLQIFNC 405 (518)
Q Consensus 396 ~L~~L~L~~c 405 (518)
=.++|++.-|
T Consensus 261 IFKyL~~qA~ 270 (722)
T KOG0532|consen 261 IFKYLSTQAC 270 (722)
T ss_pred eeeeecchhc
Confidence 3466666666
No 43
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.13 E-value=4.2e-07 Score=83.88 Aligned_cols=248 Identities=17% Similarity=0.163 Sum_probs=131.0
Q ss_pred hCCCCCCcEEEeecCCCcCc-----cCccccCccccCEEecCCC---c-CCccchhh-------hcCCCCcEeeccCCcc
Q 010089 180 FQSLPSLRVLNLSVNHYLTE-----LPVGISSLVSLHHLDLSST---K-VRGLPQEL-------KALVNLRYLNLDYTNE 243 (518)
Q Consensus 180 ~~~l~~Lr~L~L~~~~~~~~-----lp~~i~~L~~L~~L~l~~~---~-l~~lp~~i-------~~L~~L~~L~l~~~~~ 243 (518)
...+..+..++|++| .++. +...+.+.++|+.-+++.- . ..++|+.+ ...++|++||||.|-+
T Consensus 26 ~~~~~s~~~l~lsgn-t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGN-TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCC-chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 455677777778777 3331 3334555667777776642 1 22355543 3456899999988855
Q ss_pred cccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhH-HHhhcccccceEEEEEecCccccccccCcch
Q 010089 244 MCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLM-KEIHCLEQLNLIALSLRGSRGVENFLKFPKL 322 (518)
Q Consensus 244 l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l 322 (518)
-.....--.++++++.+|++|.+.+|+... .....+ +.+..|...+.. ..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~------------~ag~~l~~al~~l~~~kk~-----------------~~ 155 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGP------------EAGGRLGRALFELAVNKKA-----------------AS 155 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCCh------------hHHHHHHHHHHHHHHHhcc-----------------CC
Confidence 311011112457888999999999998732 111111 111111111100 00
Q ss_pred hhccceeecccCCC----CCccccccccccccceEEeccCcCcc--c--cccCccccccccEEEEecCCCCCC----C-c
Q 010089 323 QNITQALHIKDCNS----LPLNLLHLANMEHLQLFSIWDSNLED--W--NVDCAGEVQKMLKLHFVNCSNVKD----L-T 389 (518)
Q Consensus 323 ~~~L~~L~l~~~~~----~~~~~~~l~~l~~L~~L~l~~~~l~~--~--~~~~~~~l~~L~~L~l~~c~~l~~----l-~ 389 (518)
...|+.+....+.- ...+...+...+.|+.+.+..|.+.. + ....+..+++|+.|+|.++..-.. + .
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 12234444443321 11122455666778888887775442 1 112245677888888877642221 1 1
Q ss_pred ccccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccc-----cCCCCCCCCCcceEe
Q 010089 390 WLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKR-----IYRDPLPFPHLERIG 464 (518)
Q Consensus 390 ~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~~~~L~~L~ 464 (518)
.+..+|+|+.|++.+|.. +.-........ ....+|+|+.|.+.++. ++. +...+...|.|++|+
T Consensus 236 aL~s~~~L~El~l~dcll-~~~Ga~a~~~a---------l~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLn 304 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLL-ENEGAIAFVDA---------LKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLN 304 (382)
T ss_pred Hhcccchheeeccccccc-ccccHHHHHHH---------HhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhc
Confidence 344577888888888752 21111111111 12347888888888763 221 112344578888888
Q ss_pred ccCC
Q 010089 465 ISEC 468 (518)
Q Consensus 465 i~~C 468 (518)
+++|
T Consensus 305 LngN 308 (382)
T KOG1909|consen 305 LNGN 308 (382)
T ss_pred CCcc
Confidence 8887
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.13 E-value=1.5e-06 Score=80.34 Aligned_cols=230 Identities=19% Similarity=0.176 Sum_probs=138.4
Q ss_pred eeccccccc----ccChhhhCCCCCCcEEEeecCCCcC----ccCcc-------ccCccccCEEecCCCcCCc-----cc
Q 010089 165 LLLEYNHIE----EITESFFQSLPSLRVLNLSVNHYLT----ELPVG-------ISSLVSLHHLDLSSTKVRG-----LP 224 (518)
Q Consensus 165 l~l~~~~i~----~~~~~~~~~l~~Lr~L~L~~~~~~~----~lp~~-------i~~L~~L~~L~l~~~~l~~-----lp 224 (518)
+.+++|.+. +.....+.+.+.||..++++- +.+ ++|+. +-..++|++|+||.|-+.. +-
T Consensus 35 l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~ 113 (382)
T KOG1909|consen 35 LDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLE 113 (382)
T ss_pred EeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHH
Confidence 778888764 233344778889999999876 333 34444 3445699999999985543 33
Q ss_pred hhhhcCCCCcEeeccCCcccccccCCchh-------------hhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhH
Q 010089 225 QELKALVNLRYLNLDYTNEMCKMCKIPEQ-------------LISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLM 291 (518)
Q Consensus 225 ~~i~~L~~L~~L~l~~~~~l~~~~~lp~~-------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (518)
+-+.+.+.|++|.+.+|..- ....+ .+.+-++|+.+...+|.... ......-
T Consensus 114 ~ll~s~~~L~eL~L~N~Glg----~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen-----------~ga~~~A 178 (382)
T KOG1909|consen 114 ELLSSCTDLEELYLNNCGLG----PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN-----------GGATALA 178 (382)
T ss_pred HHHHhccCHHHHhhhcCCCC----hhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc-----------ccHHHHH
Confidence 34677899999999999642 11111 13445667777666654421 1122223
Q ss_pred HHhhcccccceEEEEEecCccccccccCcchhhccceeecccCCCCCccccccccccccceEEeccCcCcc----ccccC
Q 010089 292 KEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED----WNVDC 367 (518)
Q Consensus 292 ~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~----~~~~~ 367 (518)
..++..+.|+.+.+..++... ..+..+...+..+++|+.|++..|.++. .....
T Consensus 179 ~~~~~~~~leevr~~qN~I~~----------------------eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRP----------------------EGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred HHHHhccccceEEEecccccC----------------------chhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 334444555555554333211 1122223567778889999998884432 13344
Q ss_pred ccccccccEEEEecCCCCCCCcc-------cccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceee
Q 010089 368 AGEVQKMLKLHFVNCSNVKDLTW-------LVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLV 440 (518)
Q Consensus 368 ~~~l~~L~~L~l~~c~~l~~l~~-------l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~ 440 (518)
++.+++|+.|.+.+| .+++=.. -...|+|+.|.+.+|..-.+-.. .+.......|.|+.|.
T Consensus 237 L~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~-----------~la~~~~ek~dL~kLn 304 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL-----------ALAACMAEKPDLEKLN 304 (382)
T ss_pred hcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH-----------HHHHHHhcchhhHHhc
Confidence 667888999999998 4443221 12378999999998764333211 1111344578899999
Q ss_pred ccCC
Q 010089 441 ISNA 444 (518)
Q Consensus 441 l~~~ 444 (518)
+++|
T Consensus 305 LngN 308 (382)
T KOG1909|consen 305 LNGN 308 (382)
T ss_pred CCcc
Confidence 9986
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.11 E-value=4.1e-06 Score=53.96 Aligned_cols=34 Identities=44% Similarity=0.631 Sum_probs=18.3
Q ss_pred ccCEEecCCCcCCccchhhhcCCCCcEeeccCCc
Q 010089 209 SLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTN 242 (518)
Q Consensus 209 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~ 242 (518)
+|++|++++|+|+++|..+++|++|++|++++|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 4555555555555555555555555555555554
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.09 E-value=4e-06 Score=54.02 Aligned_cols=41 Identities=34% Similarity=0.524 Sum_probs=35.2
Q ss_pred CCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccch
Q 010089 184 PSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQ 225 (518)
Q Consensus 184 ~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~ 225 (518)
++|++|++++| .++.+|..+++|++|++|++++|.++++|.
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 57999999999 888999889999999999999999988764
No 47
>PLN03150 hypothetical protein; Provisional
Probab=98.08 E-value=5.9e-06 Score=86.97 Aligned_cols=83 Identities=25% Similarity=0.405 Sum_probs=73.2
Q ss_pred CCcEEEeecCCCcCccCccccCccccCEEecCCCcCC-ccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcE
Q 010089 185 SLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVR-GLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQV 263 (518)
Q Consensus 185 ~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~ 263 (518)
.++.|+|+++...+.+|..++.+.+|++|+|++|.+. .+|..++.+++|+.|++++|... ..+|.. ++++++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~ls---g~iP~~-l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN---GSIPES-LGQLTSLRI 494 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCC---CCCchH-HhcCCCCCE
Confidence 3778999999666789999999999999999999987 49999999999999999999875 678876 899999999
Q ss_pred EeccccCC
Q 010089 264 LRMLHCGS 271 (518)
Q Consensus 264 L~l~~~~~ 271 (518)
|++.+|..
T Consensus 495 L~Ls~N~l 502 (623)
T PLN03150 495 LNLNGNSL 502 (623)
T ss_pred EECcCCcc
Confidence 99998865
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.96 E-value=4.8e-05 Score=73.80 Aligned_cols=73 Identities=16% Similarity=0.250 Sum_probs=51.9
Q ss_pred hCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCC-cCCccchhhhcCCCCcEeeccCCcccccccCCchhhhcCC
Q 010089 180 FQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSST-KVRGLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSF 258 (518)
Q Consensus 180 ~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l 258 (518)
+..+++++.|++++| .+..+| .+ ..+|+.|.+++| .++.+|..+. .+|++|++++|..+ ..+|.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP-~L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L---~sLP~------ 112 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLP-VL--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEI---SGLPE------ 112 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccC-CC--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccc---ccccc------
Confidence 445688889999988 788888 22 346888888887 6777887653 57888888888555 55665
Q ss_pred CCCcEEeccc
Q 010089 259 SKLQVLRMLH 268 (518)
Q Consensus 259 ~~L~~L~l~~ 268 (518)
+|++|++..
T Consensus 113 -sLe~L~L~~ 121 (426)
T PRK15386 113 -SVRSLEIKG 121 (426)
T ss_pred -ccceEEeCC
Confidence 356666643
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.91 E-value=2.5e-06 Score=85.62 Aligned_cols=98 Identities=33% Similarity=0.347 Sum_probs=66.2
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCccc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEM 244 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l 244 (518)
+.+..|.+.++... +..++.|.+|++.+| .+..+...+..+.+|++|++++|.|+.+. ++..++.|+.|++.+|..
T Consensus 77 l~l~~n~i~~~~~~-l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i- 152 (414)
T KOG0531|consen 77 LNLRQNLIAKILNH-LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLI- 152 (414)
T ss_pred hccchhhhhhhhcc-cccccceeeeecccc-chhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcc-
Confidence 33455555553332 666777778888777 66666644777778888888887777773 466777778888877765
Q ss_pred ccccCCchhhhcCCCCCcEEeccccCC
Q 010089 245 CKMCKIPEQLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 245 ~~~~~lp~~~~~~l~~L~~L~l~~~~~ 271 (518)
..++. +..+++|+.+++.++..
T Consensus 153 ---~~~~~--~~~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 153 ---SDISG--LESLKSLKLLDLSYNRI 174 (414)
T ss_pred ---hhccC--CccchhhhcccCCcchh
Confidence 45554 55677777777777665
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.80 E-value=2.2e-06 Score=86.05 Aligned_cols=106 Identities=30% Similarity=0.424 Sum_probs=81.7
Q ss_pred CCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCC
Q 010089 181 QSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSK 260 (518)
Q Consensus 181 ~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~ 260 (518)
..+..+..++++.+ .+...-..++.+.+|+.|++..+.|+.+...+..+++|++|++++|.+ ..+.. +..++.
T Consensus 69 ~~l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I----~~i~~--l~~l~~ 141 (414)
T KOG0531|consen 69 ESLTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKI----TKLEG--LSTLTL 141 (414)
T ss_pred HHhHhHHhhccchh-hhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccc----ccccc--hhhccc
Confidence 34566677778888 666655568899999999999999999876688999999999999976 67776 888999
Q ss_pred CcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecC
Q 010089 261 LQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGS 310 (518)
Q Consensus 261 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~ 310 (518)
|+.|++.+|.+.. +..+..+..|+.+++..+..
T Consensus 142 L~~L~l~~N~i~~-----------------~~~~~~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 142 LKELNLSGNLISD-----------------ISGLESLKSLKLLDLSYNRI 174 (414)
T ss_pred hhhheeccCcchh-----------------ccCCccchhhhcccCCcchh
Confidence 9999999987732 33344456666665555443
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=1.1e-05 Score=72.96 Aligned_cols=62 Identities=24% Similarity=0.349 Sum_probs=40.1
Q ss_pred CccccCEEecCCCcCCc---cchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCC
Q 010089 206 SLVSLHHLDLSSTKVRG---LPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 206 ~L~~L~~L~l~~~~l~~---lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~ 271 (518)
...+++.|||.+|.|+. +-..+.+|+.|++|+++.|.....++.+| .-+.+|++|-+.+...
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp----~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP----LPLKNLRVLVLNGTGL 133 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc----ccccceEEEEEcCCCC
Confidence 34677888888887765 33345678888888888876543233333 2345777777776654
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.67 E-value=7.4e-05 Score=72.54 Aligned_cols=69 Identities=23% Similarity=0.313 Sum_probs=46.4
Q ss_pred hccceeecccCCCCCccccccccccccceEEeccC-cCccccccCccccccccEEEEecCCCCCCCcccccCCCccEEEE
Q 010089 324 NITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDS-NLEDWNVDCAGEVQKMLKLHFVNCSNVKDLTWLVFVPNLKWLQI 402 (518)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~L 402 (518)
..++.|++++| .+..++ .+ ..+|+.|.+++| .++. .|+.+ +++|++|.+++|..+..+| ++|+.|++
T Consensus 52 ~~l~~L~Is~c-~L~sLP-~L--P~sLtsL~Lsnc~nLts-LP~~L--P~nLe~L~Ls~Cs~L~sLP-----~sLe~L~L 119 (426)
T PRK15386 52 RASGRLYIKDC-DIESLP-VL--PNELTEITIENCNNLTT-LPGSI--PEGLEKLTVCHCPEISGLP-----ESVRSLEI 119 (426)
T ss_pred cCCCEEEeCCC-CCcccC-CC--CCCCcEEEccCCCCccc-CCchh--hhhhhheEccCcccccccc-----cccceEEe
Confidence 45778888887 456655 22 246888888887 6654 44433 3578888888887766555 46777777
Q ss_pred ec
Q 010089 403 FN 404 (518)
Q Consensus 403 ~~ 404 (518)
.+
T Consensus 120 ~~ 121 (426)
T PRK15386 120 KG 121 (426)
T ss_pred CC
Confidence 53
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.67 E-value=1.9e-06 Score=86.88 Aligned_cols=105 Identities=30% Similarity=0.360 Sum_probs=72.8
Q ss_pred hhhhhhe--eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcE
Q 010089 158 IEEWEGT--LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRY 235 (518)
Q Consensus 158 ~~~~~~~--l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~ 235 (518)
...|... .+.++|.+..+..+ +.-+++|+.|||+.| .+.+.. .+..+++|++|||++|.+..+|.--..-.+|+.
T Consensus 160 s~~Wn~L~~a~fsyN~L~~mD~S-Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~ 236 (1096)
T KOG1859|consen 160 SPVWNKLATASFSYNRLVLMDES-LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQL 236 (1096)
T ss_pred chhhhhHhhhhcchhhHHhHHHH-HHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhhhhee
Confidence 3345444 66777777766665 777788888888888 454444 677788888888888888777753222234888
Q ss_pred eeccCCcccccccCCchhhhcCCCCCcEEeccccCC
Q 010089 236 LNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 236 L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~ 271 (518)
|.+++|.. ..+-. +.+|.+|+.|+++.|-.
T Consensus 237 L~lrnN~l----~tL~g--ie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 237 LNLRNNAL----TTLRG--IENLKSLYGLDLSYNLL 266 (1096)
T ss_pred eeecccHH----Hhhhh--HHhhhhhhccchhHhhh
Confidence 88888754 55555 77888888888877655
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=9.1e-05 Score=67.26 Aligned_cols=62 Identities=13% Similarity=0.213 Sum_probs=42.0
Q ss_pred cccccccccceEEeccCcCcccc-ccCccccccccEEEEecCCCCCCCc-------ccccCCCccEEEEe
Q 010089 342 LHLANMEHLQLFSIWDSNLEDWN-VDCAGEVQKMLKLHFVNCSNVKDLT-------WLVFVPNLKWLQIF 403 (518)
Q Consensus 342 ~~l~~l~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~c~~l~~l~-------~l~~l~~L~~L~L~ 403 (518)
.....++.+..|.++.+++.+|. .+.+..+++|..|.+.+.+-+..+. .++.+++++.|+=+
T Consensus 218 k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 218 KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 34455666777888777777652 3556778899999998887655443 25667877777543
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.53 E-value=3.4e-05 Score=81.19 Aligned_cols=85 Identities=26% Similarity=0.326 Sum_probs=38.3
Q ss_pred CCCCCcEEEeecCCCcC-ccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCC
Q 010089 182 SLPSLRVLNLSVNHYLT-ELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSK 260 (518)
Q Consensus 182 ~l~~Lr~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~ 260 (518)
.+|.||.|.+++-.... ++-.-..++++|+.||+++|+++.+ .++++|++||+|.+++-..... ..+ .+ +.+|++
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~-~~l-~~-LF~L~~ 221 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESY-QDL-ID-LFNLKK 221 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCch-hhH-HH-HhcccC
Confidence 34555555555532111 1122233455555555555555555 4555555555555544332100 001 11 445555
Q ss_pred CcEEeccccC
Q 010089 261 LQVLRMLHCG 270 (518)
Q Consensus 261 L~~L~l~~~~ 270 (518)
|++||++...
T Consensus 222 L~vLDIS~~~ 231 (699)
T KOG3665|consen 222 LRVLDISRDK 231 (699)
T ss_pred CCeeeccccc
Confidence 5555555443
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.47 E-value=2.6e-05 Score=62.48 Aligned_cols=84 Identities=20% Similarity=0.372 Sum_probs=67.9
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCccc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEM 244 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l 244 (518)
+++++|.+..+|+.+-.+++.+..|++++| .+.++|..+..++.||.|+++.|.+...|.-+..|.+|-.|+..++..
T Consensus 58 i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~- 135 (177)
T KOG4579|consen 58 ISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENAR- 135 (177)
T ss_pred EecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCcc-
Confidence 678888888888887777788888888888 788888888888888888888888888888888888888888877755
Q ss_pred ccccCCchh
Q 010089 245 CKMCKIPEQ 253 (518)
Q Consensus 245 ~~~~~lp~~ 253 (518)
..+|..
T Consensus 136 ---~eid~d 141 (177)
T KOG4579|consen 136 ---AEIDVD 141 (177)
T ss_pred ---ccCcHH
Confidence 456554
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.42 E-value=6.9e-06 Score=82.98 Aligned_cols=126 Identities=21% Similarity=0.252 Sum_probs=93.4
Q ss_pred CCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEE
Q 010089 185 SLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVL 264 (518)
Q Consensus 185 ~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L 264 (518)
.|.+.+.++| .+..+-+++.-++.|+.|+|++|++++.- .+..+++|++||+++|.. ..+|.-....+. |+.|
T Consensus 165 ~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L----~~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 165 KLATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCL----RHVPQLSMVGCK-LQLL 237 (1096)
T ss_pred hHhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchh----ccccccchhhhh-heee
Confidence 4677778888 67777888888999999999999999874 789999999999999965 677752233444 9999
Q ss_pred eccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhhccceeecccCC
Q 010089 265 RMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCN 335 (518)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~ 335 (518)
.+.+|.. ..+.++.+|++|+.|+++.+-......+..+..+ ..|+.|++.|++
T Consensus 238 ~lrnN~l-----------------~tL~gie~LksL~~LDlsyNll~~hseL~pLwsL-s~L~~L~LeGNP 290 (1096)
T KOG1859|consen 238 NLRNNAL-----------------TTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSL-SSLIVLWLEGNP 290 (1096)
T ss_pred eecccHH-----------------HhhhhHHhhhhhhccchhHhhhhcchhhhHHHHH-HHHHHHhhcCCc
Confidence 9988754 4466677778888887776654444444433333 457888888875
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.32 E-value=4.4e-05 Score=78.68 Aligned_cols=88 Identities=26% Similarity=0.259 Sum_probs=50.8
Q ss_pred hCCCCCCcEEEeecCCCcCc--cCccccCccccCEEecCCC--cCCcc----chhhhcCCCCcEeeccCCcccccccCCc
Q 010089 180 FQSLPSLRVLNLSVNHYLTE--LPVGISSLVSLHHLDLSST--KVRGL----PQELKALVNLRYLNLDYTNEMCKMCKIP 251 (518)
Q Consensus 180 ~~~l~~Lr~L~L~~~~~~~~--lp~~i~~L~~L~~L~l~~~--~l~~l----p~~i~~L~~L~~L~l~~~~~l~~~~~lp 251 (518)
...++.|+.|.+.++..+.. +-......++|+.|+++++ .+... +.....+++|+.|+++++..+ ...-
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i---sd~~ 260 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV---TDIG 260 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc---Cchh
Confidence 34467777777777755554 3234556778888888763 22221 223445677778888777633 2111
Q ss_pred -hhhhcCCCCCcEEeccccC
Q 010089 252 -EQLISSFSKLQVLRMLHCG 270 (518)
Q Consensus 252 -~~~~~~l~~L~~L~l~~~~ 270 (518)
..+...+++|++|.+.+|.
T Consensus 261 l~~l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLSNCS 280 (482)
T ss_pred HHHHHhhCCCcceEccCCCC
Confidence 1223346778887766665
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.19 E-value=0.00013 Score=76.92 Aligned_cols=141 Identities=17% Similarity=0.185 Sum_probs=77.5
Q ss_pred hhhccceeecccCCCCCc-cccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCC--CCcccccCCCcc
Q 010089 322 LQNITQALHIKDCNSLPL-NLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVK--DLTWLVFVPNLK 398 (518)
Q Consensus 322 l~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~--~l~~l~~l~~L~ 398 (518)
..+.|++|.+.+-.-... +..-..++++|..|+|++++++. ...++.+.+|+.|.+.+..-.. .+..+-.|.+|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n--l~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN--LSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC--cHHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 334566666665332111 22445567888888888887774 3667788888888887764322 223456688888
Q ss_pred EEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCcccccc--CCCCCCCCCcceEeccCCCCCcCC
Q 010089 399 WLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRI--YRDPLPFPHLERIGISECPKLKKL 474 (518)
Q Consensus 399 ~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~~L~~L~i~~C~~L~~l 474 (518)
.|++|.-.....---...+- .....+|.|+.|+.++ +.+..- ..-...-|+|+.+.+.+|......
T Consensus 224 vLDIS~~~~~~~~~ii~qYl---------ec~~~LpeLrfLDcSg-Tdi~~~~le~ll~sH~~L~~i~~~~~~~~~~~ 291 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYL---------ECGMVLPELRFLDCSG-TDINEEILEELLNSHPNLQQIAALDCLALSAV 291 (699)
T ss_pred eeeccccccccchHHHHHHH---------HhcccCccccEEecCC-cchhHHHHHHHHHhCccHhhhhhhhhhccccc
Confidence 88888644332211111111 1333578888887775 222110 001123466666666655444333
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.86 E-value=0.00011 Score=75.82 Aligned_cols=64 Identities=27% Similarity=0.211 Sum_probs=38.6
Q ss_pred ccccCEEecCCC-cCCc--cchhhhcCCCCcEeeccCC-cccccccCCchhhhcCCCCCcEEeccccC
Q 010089 207 LVSLHHLDLSST-KVRG--LPQELKALVNLRYLNLDYT-NEMCKMCKIPEQLISSFSKLQVLRMLHCG 270 (518)
Q Consensus 207 L~~L~~L~l~~~-~l~~--lp~~i~~L~~L~~L~l~~~-~~l~~~~~lp~~~~~~l~~L~~L~l~~~~ 270 (518)
.+.|+.|.+.++ .+.. +-......++|+.|++++| ................+.+|+.|++..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 677788878777 5555 4355667788888888773 22100010111235566778888887776
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.79 E-value=0.00022 Score=57.30 Aligned_cols=102 Identities=24% Similarity=0.323 Sum_probs=78.5
Q ss_pred eecccccccccChh--hhCCCCCCcEEEeecCCCcCccCccccC-ccccCEEecCCCcCCccchhhhcCCCCcEeeccCC
Q 010089 165 LLLEYNHIEEITES--FFQSLPSLRVLNLSVNHYLTELPVGISS-LVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYT 241 (518)
Q Consensus 165 l~l~~~~i~~~~~~--~~~~l~~Lr~L~L~~~~~~~~lp~~i~~-L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~ 241 (518)
++|+.+.+-.++.. .+....+|...+|++| .++++|..+.. .+-+++|++.+|.|.++|.++..++.|+.|+++.|
T Consensus 32 ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 32 LDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN 110 (177)
T ss_pred cccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC
Confidence 45555555433322 2556678888999999 78888888754 45899999999999999999999999999999999
Q ss_pred cccccccCCchhhhcCCCCCcEEeccccCCC
Q 010089 242 NEMCKMCKIPEQLISSFSKLQVLRMLHCGSN 272 (518)
Q Consensus 242 ~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 272 (518)
.. ...|.- +..|.+|-.|+..++...
T Consensus 111 ~l----~~~p~v-i~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 111 PL----NAEPRV-IAPLIKLDMLDSPENARA 136 (177)
T ss_pred cc----ccchHH-HHHHHhHHHhcCCCCccc
Confidence 76 566664 667888888888776653
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.66 E-value=0.0031 Score=54.34 Aligned_cols=106 Identities=16% Similarity=0.169 Sum_probs=75.8
Q ss_pred ccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCC--CCCCCcccccCCCccEEEE
Q 010089 325 ITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCS--NVKDLTWLVFVPNLKWLQI 402 (518)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~--~l~~l~~l~~l~~L~~L~L 402 (518)
....+++++++- ... ..++.++.|..|.+..|.++.+.|.-...+++|..|.+.++. .+.++..+..+|.|++|.+
T Consensus 43 ~~d~iDLtdNdl-~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDL-RKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccch-hhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 345667766542 221 577888999999999999998888777778999999998864 3445667888999999999
Q ss_pred ecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCC
Q 010089 403 FNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNA 444 (518)
Q Consensus 403 ~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~ 444 (518)
-+.+. ++..... ...+..+|+|+.|++..-
T Consensus 121 l~Npv-~~k~~YR-----------~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPV-EHKKNYR-----------LYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCch-hcccCce-----------eEEEEecCcceEeehhhh
Confidence 88653 2221110 014567899999999874
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.52 E-value=0.003 Score=54.51 Aligned_cols=103 Identities=20% Similarity=0.270 Sum_probs=72.2
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccC-ccccCEEecCCCcCCccch--hhhcCCCCcEeeccCC
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISS-LVSLHHLDLSSTKVRGLPQ--ELKALVNLRYLNLDYT 241 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~-L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~ 241 (518)
+++.+|.+..++. |..++.|.+|.+..| .+..+-..+.. +++|..|.+.+|+|.++-+ .+..++.|++|.+-+|
T Consensus 47 iDLtdNdl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 47 IDLTDNDLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred ecccccchhhccc--CCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC
Confidence 7788888877765 788888899999888 66666555554 5668888888888776532 3566778888888777
Q ss_pred cccccccCCchhhhcCCCCCcEEeccccCC
Q 010089 242 NEMCKMCKIPEQLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 242 ~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~ 271 (518)
..- .....-.-++.++++|++|+..+...
T Consensus 124 pv~-~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 124 PVE-HKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred chh-cccCceeEEEEecCcceEeehhhhhH
Confidence 541 11122223578888888888876544
No 64
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.48 E-value=0.0013 Score=35.15 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=11.6
Q ss_pred ccCEEecCCCcCCccchhhh
Q 010089 209 SLHHLDLSSTKVRGLPQELK 228 (518)
Q Consensus 209 ~L~~L~l~~~~l~~lp~~i~ 228 (518)
+|++|++++|+++.+|++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35666666666666665544
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.39 E-value=0.0032 Score=56.63 Aligned_cols=85 Identities=25% Similarity=0.380 Sum_probs=46.8
Q ss_pred CCCCcEEEeecCCCcCccCccccCccccCEEecCCC--cCCc-cchhhhcCCCCcEeeccCCcccccccCCchhhhcCCC
Q 010089 183 LPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSST--KVRG-LPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFS 259 (518)
Q Consensus 183 l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~--~l~~-lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~ 259 (518)
+..|..|++.++ .++++- .+..|++|++|+++.| .+.. ++.-..++++|++|++++|++- ....+++ +..+.
T Consensus 42 ~~~le~ls~~n~-gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~lstl~p--l~~l~ 116 (260)
T KOG2739|consen 42 FVELELLSVINV-GLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-DLSTLRP--LKELE 116 (260)
T ss_pred ccchhhhhhhcc-ceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-cccccch--hhhhc
Confidence 334444444444 222221 3345667777777766 3332 5555555677777777777542 1134444 56666
Q ss_pred CCcEEeccccCCC
Q 010089 260 KLQVLRMLHCGSN 272 (518)
Q Consensus 260 ~L~~L~l~~~~~~ 272 (518)
+|..|+++.|...
T Consensus 117 nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 117 NLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcccCCcc
Confidence 7777777777653
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.00053 Score=61.83 Aligned_cols=56 Identities=11% Similarity=0.144 Sum_probs=26.2
Q ss_pred ccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCC
Q 010089 209 SLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 209 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~ 271 (518)
+.+.|+..+|.+..+ +...+|+.|+.|.|+-|++ ..+.+ +..+++|++|++..|.+
T Consensus 20 ~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkI----ssL~p--l~rCtrLkElYLRkN~I 75 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKI----SSLAP--LQRCTRLKELYLRKNCI 75 (388)
T ss_pred HhhhhcccCCCccHH-HHHHhcccceeEEeecccc----ccchh--HHHHHHHHHHHHHhccc
Confidence 334444444444443 2234455555555555543 34443 44555555555554443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.99 E-value=0.0039 Score=56.07 Aligned_cols=104 Identities=27% Similarity=0.294 Sum_probs=72.8
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecC--CCcCccCccccCccccCEEecCCCcCCc---cchhhhcCCCCcEeecc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVN--HYLTELPVGISSLVSLHHLDLSSTKVRG---LPQELKALVNLRYLNLD 239 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~--~~~~~lp~~i~~L~~L~~L~l~~~~l~~---lp~~i~~L~~L~~L~l~ 239 (518)
+++.+..++.+.. |..+++|+.|.++.| .....++-....+++|++|++++|++.. ++ .+.++.+|..|++.
T Consensus 48 ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~ 124 (260)
T KOG2739|consen 48 LSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLF 124 (260)
T ss_pred hhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcc
Confidence 3444444444332 677899999999999 5555666666777999999999997764 32 36788999999999
Q ss_pred CCcccccccCCchhhhcCCCCCcEEeccccCCC
Q 010089 240 YTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSN 272 (518)
Q Consensus 240 ~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 272 (518)
+|.... ...--..++.-+++|++|+...+...
T Consensus 125 n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 125 NCSVTN-LDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred cCCccc-cccHHHHHHHHhhhhccccccccCCc
Confidence 986531 12222345677888999887766553
No 68
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.0012 Score=56.83 Aligned_cols=65 Identities=17% Similarity=0.287 Sum_probs=29.7
Q ss_pred cccccccEEEEecCCCCCCC--cccc-cCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCc
Q 010089 369 GEVQKMLKLHFVNCSNVKDL--TWLV-FVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNAS 445 (518)
Q Consensus 369 ~~l~~L~~L~l~~c~~l~~l--~~l~-~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 445 (518)
..++.++.|.+.+|..+.+- ..++ -.|+|+.|+|++|+.+++-.- ..+..|++|+.|.|.+++
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL--------------~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL--------------ACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH--------------HHHHHhhhhHHHHhcCch
Confidence 34444445555554433321 1111 245555555555555554211 133445555555555554
Q ss_pred cc
Q 010089 446 NL 447 (518)
Q Consensus 446 ~l 447 (518)
..
T Consensus 188 ~v 189 (221)
T KOG3864|consen 188 YV 189 (221)
T ss_pred hh
Confidence 43
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=0.0019 Score=58.44 Aligned_cols=96 Identities=26% Similarity=0.313 Sum_probs=71.4
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccch--hhhcCCCCcEeeccCCc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQ--ELKALVNLRYLNLDYTN 242 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~ 242 (518)
+++.++.+..+. +..+|+.|.||.|+-| .++++. .+..+++|+.|.|+.|.|.++-+ -+.++++|++|-|..|.
T Consensus 24 LNcwg~~L~DIs--ic~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 24 LNCWGCGLDDIS--ICEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred hcccCCCccHHH--HHHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 566677776654 3678999999999998 677764 67888999999999998887633 35788888998888876
Q ss_pred ccccccCCc----hhhhcCCCCCcEEecc
Q 010089 243 EMCKMCKIP----EQLISSFSKLQVLRML 267 (518)
Q Consensus 243 ~l~~~~~lp----~~~~~~l~~L~~L~l~ 267 (518)
.. ..-+ ..++..|+||+.|+-.
T Consensus 100 Cc---~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 100 CC---GEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred cc---cccchhHHHHHHHHcccchhccCc
Confidence 54 2222 2357788888888744
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.42 E-value=0.0018 Score=55.76 Aligned_cols=86 Identities=20% Similarity=0.445 Sum_probs=63.3
Q ss_pred cceeecccCCCCCccccccccccccceEEeccC-cCccccccCcc-ccccccEEEEecCCCCCC--CcccccCCCccEEE
Q 010089 326 TQALHIKDCNSLPLNLLHLANMEHLQLFSIWDS-NLEDWNVDCAG-EVQKMLKLHFVNCSNVKD--LTWLVFVPNLKWLQ 401 (518)
Q Consensus 326 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~l~~~~~~~~~-~l~~L~~L~l~~c~~l~~--l~~l~~l~~L~~L~ 401 (518)
++.++-+++.....-...+..++.++.|.+.+| .+.+|..+.++ ..++|+.|+|++|+.+++ +-++..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 455555554322222266777888899999998 88877666554 478899999999998886 45788899999999
Q ss_pred EecCcchhhh
Q 010089 402 IFNCDDMEEI 411 (518)
Q Consensus 402 L~~c~~l~~~ 411 (518)
|.+.+.+...
T Consensus 183 l~~l~~v~~~ 192 (221)
T KOG3864|consen 183 LYDLPYVANL 192 (221)
T ss_pred hcCchhhhch
Confidence 9987765543
No 71
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.19 E-value=0.02 Score=51.89 Aligned_cols=86 Identities=27% Similarity=0.245 Sum_probs=52.4
Q ss_pred CCCCcEEEeecCCCcCc----cCccccCccccCEEecCCCcC----Cccchh-------hhcCCCCcEeeccCCcccccc
Q 010089 183 LPSLRVLNLSVNHYLTE----LPVGISSLVSLHHLDLSSTKV----RGLPQE-------LKALVNLRYLNLDYTNEMCKM 247 (518)
Q Consensus 183 l~~Lr~L~L~~~~~~~~----lp~~i~~L~~L~~L~l~~~~l----~~lp~~-------i~~L~~L~~L~l~~~~~l~~~ 247 (518)
+..+..++||||.+-++ +...|.+-.+|+.-+++.-.. .++|++ +-++++|+..+++.|-+-
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg--- 105 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG--- 105 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC---
Confidence 56666667777632221 223344455666666554211 113333 457788999999888664
Q ss_pred cCCch---hhhcCCCCCcEEeccccCC
Q 010089 248 CKIPE---QLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 248 ~~lp~---~~~~~l~~L~~L~l~~~~~ 271 (518)
...|+ +.+++-++|.||.+.+|+.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCC
Confidence 44443 3578888999999998876
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.13 E-value=0.0098 Score=31.69 Aligned_cols=22 Identities=45% Similarity=0.611 Sum_probs=17.7
Q ss_pred CCcEEEeecCCCcCccCccccCc
Q 010089 185 SLRVLNLSVNHYLTELPVGISSL 207 (518)
Q Consensus 185 ~Lr~L~L~~~~~~~~lp~~i~~L 207 (518)
+|++|++++| .++.+|.++++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT-
T ss_pred CccEEECCCC-cCEeCChhhcCC
Confidence 5899999999 777999887654
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.86 E-value=0.019 Score=28.34 Aligned_cols=16 Identities=44% Similarity=0.787 Sum_probs=5.8
Q ss_pred ccCEEecCCCcCCccc
Q 010089 209 SLHHLDLSSTKVRGLP 224 (518)
Q Consensus 209 ~L~~L~l~~~~l~~lp 224 (518)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3445555555444443
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.27 E-value=0.025 Score=27.89 Aligned_cols=17 Identities=35% Similarity=0.685 Sum_probs=8.8
Q ss_pred CCcceEeccCCCCCcCCC
Q 010089 458 PHLERIGISECPKLKKLP 475 (518)
Q Consensus 458 ~~L~~L~i~~C~~L~~lp 475 (518)
++|+.|++++|. |+++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 456777777774 66665
No 75
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.28 E-value=0.26 Score=44.91 Aligned_cols=78 Identities=23% Similarity=0.273 Sum_probs=52.6
Q ss_pred eecccccccc----cChhhhCCCCCCcEEEeecCCCcC----ccCc-------cccCccccCEEecCCCcCCc-cch---
Q 010089 165 LLLEYNHIEE----ITESFFQSLPSLRVLNLSVNHYLT----ELPV-------GISSLVSLHHLDLSSTKVRG-LPQ--- 225 (518)
Q Consensus 165 l~l~~~~i~~----~~~~~~~~l~~Lr~L~L~~~~~~~----~lp~-------~i~~L~~L~~L~l~~~~l~~-lp~--- 225 (518)
+++++|-|.. .....+.+-++|++.+++.- +.+ ++|+ .+-++++|+..+++.|.+.. .|+
T Consensus 35 vdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~ 113 (388)
T COG5238 35 VDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELG 113 (388)
T ss_pred EeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHH
Confidence 6677776642 12223667788899888875 332 2332 34578899999999886553 443
Q ss_pred -hhhcCCCCcEeeccCCcc
Q 010089 226 -ELKALVNLRYLNLDYTNE 243 (518)
Q Consensus 226 -~i~~L~~L~~L~l~~~~~ 243 (518)
-|.+-+.|.+|.+++|..
T Consensus 114 d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 114 DLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HHHhcCCCceeEEeecCCC
Confidence 356778999999998854
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.63 E-value=0.17 Score=28.10 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=11.6
Q ss_pred cccCEEecCCCcCCccchh
Q 010089 208 VSLHHLDLSSTKVRGLPQE 226 (518)
Q Consensus 208 ~~L~~L~l~~~~l~~lp~~ 226 (518)
.+|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666654
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.63 E-value=0.17 Score=28.10 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=11.6
Q ss_pred cccCEEecCCCcCCccchh
Q 010089 208 VSLHHLDLSSTKVRGLPQE 226 (518)
Q Consensus 208 ~~L~~L~l~~~~l~~lp~~ 226 (518)
.+|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666654
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.48 E-value=0.012 Score=51.97 Aligned_cols=76 Identities=20% Similarity=0.150 Sum_probs=40.5
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTN 242 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~ 242 (518)
++++.|++..+-.. |+.+..|..|+++.+ .+..+|.+++.+..++.+++..|..+..|.+.++++++++++..++.
T Consensus 47 ld~~s~r~vn~~~n-~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 47 LDLSSNRLVNLGKN-FSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred ehhhhhHHHhhccc-hHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCc
Confidence 44444444433333 444455555555555 45555555555555555555555555555555555555555555553
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.00 E-value=0.0077 Score=53.13 Aligned_cols=92 Identities=24% Similarity=0.211 Sum_probs=68.7
Q ss_pred ccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccCCchh
Q 010089 174 EITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCKIPEQ 253 (518)
Q Consensus 174 ~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~ 253 (518)
++|-.-+..++...+||++.+ ....+-..++.+..|..|+++.+.+.-+|..++.+..++++++..|.. ...|.+
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~----~~~p~s 106 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNH----SQQPKS 106 (326)
T ss_pred ccchhhhhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccch----hhCCcc
Confidence 444433666777888888887 555566677778888888888888888888888888888888877754 777876
Q ss_pred hhcCCCCCcEEeccccCC
Q 010089 254 LISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 254 ~~~~l~~L~~L~l~~~~~ 271 (518)
....+.+++++.-++..
T Consensus 107 -~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 107 -QKKEPHPKKNEQKKTEF 123 (326)
T ss_pred -ccccCCcchhhhccCcc
Confidence 77888888887766543
No 80
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=87.92 E-value=1.2 Score=36.21 Aligned_cols=87 Identities=21% Similarity=0.365 Sum_probs=31.6
Q ss_pred ccccChhhhCCCCCCcEEEeecCCCcCccC-ccccCccccCEEecCCCcCCccchh-hhcCCCCcEeeccCCcccccccC
Q 010089 172 IEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDLSSTKVRGLPQE-LKALVNLRYLNLDYTNEMCKMCK 249 (518)
Q Consensus 172 i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~ 249 (518)
+..+....|..++.|+.+.+..+ +..++ ..+.++..|+++.+.. .+..++.. +..+++|+.+++..+ + ..
T Consensus 23 ~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~--~---~~ 94 (129)
T PF13306_consen 23 IKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN--I---TE 94 (129)
T ss_dssp --EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT------BE
T ss_pred eeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccccccccCcc--c---cE
Confidence 44444444555555555555443 22222 2244444555555543 33333322 333555555555432 1 33
Q ss_pred CchhhhcCCCCCcEEecc
Q 010089 250 IPEQLISSFSKLQVLRML 267 (518)
Q Consensus 250 lp~~~~~~l~~L~~L~l~ 267 (518)
++...+.+. +|+.+.+.
T Consensus 95 i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 95 IGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EHTTTTTT--T--EEE-T
T ss_pred EchhhhcCC-CceEEEEC
Confidence 444434444 55555443
No 81
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=87.74 E-value=1.1 Score=36.38 Aligned_cols=86 Identities=12% Similarity=0.229 Sum_probs=52.6
Q ss_pred cChhhhCCCCCCcEEEeecCCCcCccC-ccccCccccCEEecCCCcCCccchh-hhcCCCCcEeeccCCcccccccCCch
Q 010089 175 ITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDLSSTKVRGLPQE-LKALVNLRYLNLDYTNEMCKMCKIPE 252 (518)
Q Consensus 175 ~~~~~~~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~lp~ 252 (518)
++...|.++.+|+.+.+... +..++ ..+..+.+|+.+.+..+ +..++.. +..+.+|+.+.+..+ . ..++.
T Consensus 3 i~~~~F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~-~----~~i~~ 74 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN-L----KSIGD 74 (129)
T ss_dssp E-TTTTTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST-T-----EE-T
T ss_pred ECHHHHhCCCCCCEEEECCC--eeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc-c----ccccc
Confidence 45667999999999998753 44454 44777889999999875 7776653 566768999999653 2 55666
Q ss_pred hhhcCCCCCcEEeccc
Q 010089 253 QLISSFSKLQVLRMLH 268 (518)
Q Consensus 253 ~~~~~l~~L~~L~l~~ 268 (518)
..+..+++|+.+.+..
T Consensus 75 ~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 75 NAFSNCTNLKNIDIPS 90 (129)
T ss_dssp TTTTT-TTECEEEETT
T ss_pred ccccccccccccccCc
Confidence 6677789999998854
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=86.75 E-value=0.5 Score=26.19 Aligned_cols=17 Identities=24% Similarity=0.700 Sum_probs=13.1
Q ss_pred CCCcceEeccCCCCCcC
Q 010089 457 FPHLERIGISECPKLKK 473 (518)
Q Consensus 457 ~~~L~~L~i~~C~~L~~ 473 (518)
+|+|++|++++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46788888888887763
No 83
>PRK04841 transcriptional regulator MalT; Provisional
Probab=83.06 E-value=3.6 Score=46.20 Aligned_cols=117 Identities=16% Similarity=0.214 Sum_probs=73.4
Q ss_pred CcccCCCCchHHHHHHHHhcCCCChhHHHHHHHHHhccCCcccchHHHHHHHHhhh-cCCCCchhhhhHhhhhcccCCCC
Q 010089 1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFS-YDSLPNDELRSCLLYCCLFPEDS 79 (518)
Q Consensus 1 I~~~c~GlPLai~~ig~~L~~~~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~~s-Y~~L~~~~lk~cfl~~a~fp~~~ 79 (518)
|.+.|+|.|+++..++..++...... ......+.... ...+...+.-. |+.||+ +.+..+...|+++
T Consensus 211 l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~~~~~~------~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~--- 278 (903)
T PRK04841 211 LCDDVEGWATALQLIALSARQNNSSL--HDSARRLAGIN------ASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR--- 278 (903)
T ss_pred HHHHhCChHHHHHHHHHHHhhCCCch--hhhhHhhcCCC------chhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---
Confidence 35789999999999998876532100 11111111100 11344443333 789999 8999999999987
Q ss_pred ccChHHHHHHHHHhCCCcccchhHHHHHHHHhccccc--C-CCc-eecchHHHHHHHHHH
Q 010089 80 EIRKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEE--G-GDH-VKMHDMIRDMALWIA 135 (518)
Q Consensus 80 ~i~~~~Li~~Wia~g~i~~~~~~~~~~~L~~~sli~~--~-~~~-~~mHdl~~dl~~~i~ 135 (518)
.|+.+ +.. .......+.+.+++|.++++|.. + +.. |+.|++++++.+.-.
T Consensus 279 ~~~~~-l~~-----~l~~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 279 SMNDA-LIV-----RVTGEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred cCCHH-HHH-----HHcCCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 34433 322 12222256788999999998753 2 233 899999999987654
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.22 E-value=1.4 Score=24.38 Aligned_cols=18 Identities=33% Similarity=0.626 Sum_probs=12.9
Q ss_pred cccCEEecCCCcCCccch
Q 010089 208 VSLHHLDLSSTKVRGLPQ 225 (518)
Q Consensus 208 ~~L~~L~l~~~~l~~lp~ 225 (518)
.+|++|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357777777777777775
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=64.53 E-value=5.4 Score=22.13 Aligned_cols=15 Identities=40% Similarity=0.649 Sum_probs=7.8
Q ss_pred cccCEEecCCCcCCc
Q 010089 208 VSLHHLDLSSTKVRG 222 (518)
Q Consensus 208 ~~L~~L~l~~~~l~~ 222 (518)
.+|+.|++++|.|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 455555555555443
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=63.76 E-value=3 Score=22.39 Aligned_cols=10 Identities=40% Similarity=0.537 Sum_probs=3.4
Q ss_pred CCcEeeccCC
Q 010089 232 NLRYLNLDYT 241 (518)
Q Consensus 232 ~L~~L~l~~~ 241 (518)
+|++|++++|
T Consensus 3 ~L~~L~l~~n 12 (24)
T PF13516_consen 3 NLETLDLSNN 12 (24)
T ss_dssp T-SEEE-TSS
T ss_pred CCCEEEccCC
Confidence 3444444444
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=52.15 E-value=0.66 Score=47.22 Aligned_cols=106 Identities=26% Similarity=0.344 Sum_probs=59.2
Q ss_pred eecccccccccC----hhhhCCCCCCcEEEeecCCCcCc-----cCccccCc-cccCEEecCCCcCCc-----cchhhhc
Q 010089 165 LLLEYNHIEEIT----ESFFQSLPSLRVLNLSVNHYLTE-----LPVGISSL-VSLHHLDLSSTKVRG-----LPQELKA 229 (518)
Q Consensus 165 l~l~~~~i~~~~----~~~~~~l~~Lr~L~L~~~~~~~~-----lp~~i~~L-~~L~~L~l~~~~l~~-----lp~~i~~ 229 (518)
+++.+|.+.... ...+.....|..|++++| .+.. +-..+... ..|++|.+..|.++. +.+.+.+
T Consensus 92 L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~ 170 (478)
T KOG4308|consen 92 LSLANNRLGDRGAEELAQALKTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEK 170 (478)
T ss_pred hhhhhCccccchHHHHHHHhcccccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhc
Confidence 555566554322 233566777777888887 3331 11112222 556777777776554 5566666
Q ss_pred CCCCcEeeccCCccccccc-CCchh---hhcCCCCCcEEeccccCC
Q 010089 230 LVNLRYLNLDYTNEMCKMC-KIPEQ---LISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 230 L~~L~~L~l~~~~~l~~~~-~lp~~---~~~~l~~L~~L~l~~~~~ 271 (518)
...|+.++++.|.....+. .++.. .+....++++|++.+|..
T Consensus 171 ~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~ 216 (478)
T KOG4308|consen 171 NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGV 216 (478)
T ss_pred ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCc
Confidence 7778888887775521111 11111 122466778888887765
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=48.15 E-value=13 Score=20.85 Aligned_cols=13 Identities=54% Similarity=0.705 Sum_probs=7.0
Q ss_pred ccCEEecCCCcCC
Q 010089 209 SLHHLDLSSTKVR 221 (518)
Q Consensus 209 ~L~~L~l~~~~l~ 221 (518)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555443
No 89
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=22.76 E-value=43 Score=17.32 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=8.9
Q ss_pred cCEEecCCCcCCccch
Q 010089 210 LHHLDLSSTKVRGLPQ 225 (518)
Q Consensus 210 L~~L~l~~~~l~~lp~ 225 (518)
|..|++.+++++.+++
T Consensus 2 LVeL~m~~S~lekLW~ 17 (20)
T PF07725_consen 2 LVELNMPYSKLEKLWE 17 (20)
T ss_pred cEEEECCCCChHHhcC
Confidence 4556666665555544
Done!