Query 010089
Match_columns 518
No_of_seqs 361 out of 3035
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 19:39:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010089.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010089hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 2.2E-23 7.6E-28 201.5 19.2 241 182-502 79-320 (328)
2 4fmz_A Internalin; leucine ric 99.9 1.5E-22 5E-27 197.9 21.0 275 148-476 52-328 (347)
3 3v47_A TOLL-like receptor 5B a 99.9 9.6E-23 3.3E-27 206.9 19.1 312 145-491 15-403 (455)
4 4fcg_A Uncharacterized protein 99.9 6E-23 2.1E-27 198.5 15.2 215 165-467 86-310 (328)
5 2z7x_B TOLL-like receptor 1, v 99.9 6E-22 2.1E-26 204.6 23.2 332 147-491 7-476 (520)
6 2id5_A Lingo-1, leucine rich r 99.9 4.9E-22 1.7E-26 202.9 22.2 293 145-477 16-314 (477)
7 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.3E-21 4.3E-26 203.9 23.5 121 144-272 35-159 (562)
8 3o6n_A APL1; leucine-rich repe 99.9 2.7E-22 9.2E-27 199.3 17.0 268 165-476 50-335 (390)
9 3o6n_A APL1; leucine-rich repe 99.9 5.4E-22 1.8E-26 197.1 19.0 273 165-469 74-350 (390)
10 3t6q_A CD180 antigen; protein- 99.9 7.4E-21 2.5E-25 200.2 26.7 126 145-274 17-144 (606)
11 4fmz_A Internalin; leucine ric 99.9 4.7E-21 1.6E-25 187.2 21.7 272 145-469 71-344 (347)
12 2ft3_A Biglycan; proteoglycan, 99.9 1.7E-21 5.9E-26 189.0 18.3 286 148-469 41-331 (332)
13 1xku_A Decorin; proteoglycan, 99.9 5.7E-21 1.9E-25 185.2 21.8 285 147-468 38-329 (330)
14 1ogq_A PGIP-2, polygalacturona 99.9 2.2E-22 7.4E-27 193.4 11.5 250 165-476 55-309 (313)
15 3oja_B Anopheles plasmodium-re 99.9 7.5E-22 2.6E-26 206.9 16.3 259 165-476 80-341 (597)
16 4eco_A Uncharacterized protein 99.9 9.1E-22 3.1E-26 207.5 16.8 297 165-491 211-574 (636)
17 3vq2_A TLR4, TOLL-like recepto 99.9 1E-20 3.5E-25 199.1 24.6 140 344-491 281-432 (606)
18 3oja_B Anopheles plasmodium-re 99.9 2.7E-21 9.4E-26 202.6 19.2 250 165-469 104-356 (597)
19 3t6q_A CD180 antigen; protein- 99.9 2.4E-21 8.1E-26 204.0 17.6 277 165-477 259-541 (606)
20 2id5_A Lingo-1, leucine rich r 99.9 5.7E-21 1.9E-25 195.0 18.6 266 165-469 61-331 (477)
21 3j0a_A TOLL-like receptor 5; m 99.9 1.7E-20 5.8E-25 204.4 23.4 299 143-476 7-379 (844)
22 3v47_A TOLL-like receptor 5B a 99.9 6.3E-21 2.1E-25 193.5 18.7 291 165-475 59-412 (455)
23 2z63_A TOLL-like receptor 4, v 99.9 1.1E-20 3.8E-25 197.4 21.1 104 165-273 57-163 (570)
24 4eco_A Uncharacterized protein 99.9 1.6E-21 5.5E-26 205.6 14.4 270 199-491 197-521 (636)
25 3rgz_A Protein brassinosteroid 99.9 2.4E-21 8.3E-26 208.9 16.1 82 325-406 395-477 (768)
26 1o6v_A Internalin A; bacterial 99.9 3.4E-20 1.2E-24 188.5 23.5 257 165-475 73-347 (466)
27 4ecn_A Leucine-rich repeat pro 99.9 6E-21 2.1E-25 205.1 17.8 297 165-495 453-839 (876)
28 1o6v_A Internalin A; bacterial 99.9 3.6E-20 1.2E-24 188.3 22.4 282 165-491 51-339 (466)
29 1ziw_A TOLL-like receptor 3; i 99.9 2.6E-20 9E-25 198.7 21.6 320 145-476 9-372 (680)
30 3rgz_A Protein brassinosteroid 99.8 7.7E-21 2.6E-25 205.0 17.3 235 165-408 299-551 (768)
31 3vq2_A TLR4, TOLL-like recepto 99.8 2.8E-20 9.6E-25 195.8 21.2 104 165-272 61-166 (606)
32 4ecn_A Leucine-rich repeat pro 99.8 1.2E-20 4E-25 202.8 17.0 269 200-492 440-762 (876)
33 2z81_A CD282 antigen, TOLL-lik 99.8 1.4E-20 5E-25 195.6 14.8 101 165-270 31-134 (549)
34 1xku_A Decorin; proteoglycan, 99.8 1.4E-19 4.8E-24 175.4 20.3 258 165-469 36-304 (330)
35 2z81_A CD282 antigen, TOLL-lik 99.8 1.1E-19 3.7E-24 189.0 20.4 150 165-335 55-207 (549)
36 2z80_A TOLL-like receptor 2, v 99.8 5.7E-20 2E-24 179.9 16.7 268 165-469 36-312 (353)
37 2z7x_B TOLL-like receptor 1, v 99.8 8.4E-20 2.9E-24 188.5 18.5 99 164-273 4-104 (520)
38 1ziw_A TOLL-like receptor 3; i 99.8 2.5E-19 8.5E-24 191.2 22.4 212 165-382 54-306 (680)
39 3bz5_A Internalin-J, INLJ; leu 99.8 1.4E-19 4.8E-24 182.7 19.3 93 165-271 47-139 (457)
40 2ft3_A Biglycan; proteoglycan, 99.8 1.1E-19 3.9E-24 176.1 16.8 260 164-471 37-307 (332)
41 3bz5_A Internalin-J, INLJ; leu 99.8 3E-19 1E-23 180.3 19.1 212 148-404 50-263 (457)
42 3j0a_A TOLL-like receptor 5; m 99.8 6.2E-19 2.1E-23 192.1 22.9 289 165-478 53-400 (844)
43 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 7.5E-19 2.6E-23 183.0 21.8 309 163-491 34-505 (562)
44 2z66_A Variable lymphocyte rec 99.8 2.2E-19 7.5E-24 172.1 14.7 239 165-468 12-258 (306)
45 2z66_A Variable lymphocyte rec 99.8 2.1E-19 7.2E-24 172.2 14.1 238 145-444 12-258 (306)
46 4g8a_A TOLL-like receptor 4; l 99.8 1.6E-18 5.6E-23 183.3 21.3 122 147-273 38-162 (635)
47 3zyi_A Leucine-rich repeat-con 99.8 5.1E-19 1.7E-23 179.1 16.3 238 145-406 59-301 (452)
48 3zyj_A Leucine-rich repeat-con 99.8 5.9E-19 2E-23 178.0 15.8 237 145-406 48-290 (440)
49 3zyi_A Leucine-rich repeat-con 99.8 2.2E-18 7.4E-23 174.5 19.1 237 165-469 59-301 (452)
50 3zyj_A Leucine-rich repeat-con 99.8 3.8E-18 1.3E-22 172.0 19.8 237 165-469 48-290 (440)
51 3o53_A Protein LRIM1, AGAP0063 99.8 5.2E-19 1.8E-23 170.2 12.0 259 165-473 15-277 (317)
52 1ogq_A PGIP-2, polygalacturona 99.8 3.9E-19 1.3E-23 170.6 11.0 232 184-477 50-287 (313)
53 2a5y_B CED-4; apoptosis; HET: 99.8 2.3E-20 7.7E-25 192.9 1.4 126 1-139 322-472 (549)
54 2z80_A TOLL-like receptor 2, v 99.8 5.5E-18 1.9E-22 165.7 16.7 261 147-445 38-312 (353)
55 1ozn_A Reticulon 4 receptor; N 99.8 7.8E-18 2.7E-22 159.5 16.8 216 165-444 16-235 (285)
56 3oja_A Leucine-rich immune mol 99.8 3.2E-18 1.1E-22 174.3 13.2 78 183-271 33-111 (487)
57 3o53_A Protein LRIM1, AGAP0063 99.8 6.4E-19 2.2E-23 169.5 7.5 260 165-472 39-300 (317)
58 2z63_A TOLL-like receptor 4, v 99.7 7.6E-18 2.6E-22 175.9 14.4 257 171-469 269-529 (570)
59 1ozn_A Reticulon 4 receptor; N 99.7 3.1E-17 1.1E-21 155.3 17.1 215 145-407 16-237 (285)
60 3g06_A SSPH2 (leucine-rich rep 99.7 2.5E-17 8.5E-22 171.3 17.6 251 144-469 44-295 (622)
61 1jl5_A Outer protein YOPM; leu 99.7 5.6E-17 1.9E-21 163.5 18.2 168 165-362 116-291 (454)
62 1jl5_A Outer protein YOPM; leu 99.7 7.1E-18 2.4E-22 170.1 11.3 212 165-406 16-248 (454)
63 2xwt_C Thyrotropin receptor; s 99.7 4.8E-17 1.7E-21 149.7 13.6 92 171-271 22-117 (239)
64 1wwl_A Monocyte differentiatio 99.7 2.8E-17 9.5E-22 157.7 11.5 218 163-444 66-306 (312)
65 2o6q_A Variable lymphocyte rec 99.7 3.3E-16 1.1E-20 146.9 18.1 192 165-445 21-216 (270)
66 1h6u_A Internalin H; cell adhe 99.7 8.9E-17 3.1E-21 153.7 14.1 183 165-406 46-228 (308)
67 3g06_A SSPH2 (leucine-rich rep 99.7 2.6E-16 8.9E-21 163.7 17.6 232 143-445 64-295 (622)
68 2z62_A TOLL-like receptor 4, v 99.7 2E-16 7E-21 148.9 14.4 98 166-271 13-112 (276)
69 3rfs_A Internalin B, repeat mo 99.7 1E-16 3.5E-21 150.5 12.1 177 180-406 37-216 (272)
70 1p9a_G Platelet glycoprotein I 99.7 5.2E-16 1.8E-20 146.9 16.8 196 180-444 6-205 (290)
71 3oja_A Leucine-rich immune mol 99.7 3.3E-17 1.1E-21 166.8 9.0 95 165-272 39-133 (487)
72 2o6q_A Variable lymphocyte rec 99.7 4.8E-16 1.7E-20 145.8 16.2 123 144-271 20-145 (270)
73 4g8a_A TOLL-like receptor 4; l 99.7 2.8E-16 9.4E-21 166.2 16.2 305 165-490 81-574 (635)
74 2z62_A TOLL-like receptor 4, v 99.7 6E-16 2E-20 145.7 16.3 212 147-406 14-235 (276)
75 2ast_B S-phase kinase-associat 99.7 4.1E-17 1.4E-21 158.4 8.0 243 165-474 52-308 (336)
76 1wwl_A Monocyte differentiatio 99.7 1.5E-17 5.3E-22 159.5 4.8 246 180-468 39-306 (312)
77 2xwt_C Thyrotropin receptor; s 99.7 2.7E-16 9.2E-21 144.7 12.4 112 152-269 23-140 (239)
78 4ay9_X Follicle-stimulating ho 99.7 1.1E-15 3.6E-20 149.1 15.9 235 165-467 14-255 (350)
79 2ast_B S-phase kinase-associat 99.7 4E-17 1.4E-21 158.5 5.3 223 184-468 47-282 (336)
80 1p9a_G Platelet glycoprotein I 99.7 1.9E-15 6.4E-20 143.1 16.1 189 165-406 15-206 (290)
81 3rfs_A Internalin B, repeat mo 99.6 1.2E-15 4E-20 143.3 12.5 186 165-406 46-233 (272)
82 3sfz_A APAF-1, apoptotic pepti 99.6 1.5E-16 5.3E-21 181.2 7.4 131 1-138 313-452 (1249)
83 1h6u_A Internalin H; cell adhe 99.6 4.8E-15 1.6E-19 141.7 16.1 182 144-383 45-228 (308)
84 4ay9_X Follicle-stimulating ho 99.6 2.8E-15 9.5E-20 146.2 14.7 237 145-405 14-256 (350)
85 1vt4_I APAF-1 related killer D 99.6 3.5E-16 1.2E-20 165.1 6.6 111 4-131 322-436 (1221)
86 1h6t_A Internalin B; cell adhe 99.6 1E-14 3.5E-19 138.1 16.1 170 180-406 42-211 (291)
87 1z7x_W Ribonuclease inhibitor; 99.6 9.2E-17 3.2E-21 163.1 1.1 280 165-469 90-409 (461)
88 2ca6_A RAN GTPase-activating p 99.6 3.7E-16 1.3E-20 154.7 5.3 94 172-271 21-134 (386)
89 3ogk_B Coronatine-insensitive 99.6 1E-15 3.5E-20 160.5 7.9 290 165-473 169-527 (592)
90 1h6t_A Internalin B; cell adhe 99.6 7.2E-15 2.5E-19 139.2 12.4 170 203-444 41-210 (291)
91 4glp_A Monocyte differentiatio 99.6 5.3E-15 1.8E-19 141.7 11.6 200 182-444 89-304 (310)
92 3m19_A Variable lymphocyte rec 99.6 2.6E-14 8.8E-19 132.4 15.4 100 165-271 19-119 (251)
93 3goz_A Leucine-rich repeat-con 99.6 4.1E-16 1.4E-20 152.9 3.0 256 165-444 3-294 (362)
94 2ca6_A RAN GTPase-activating p 99.6 1E-15 3.5E-20 151.5 5.3 229 165-444 37-313 (386)
95 1m9s_A Internalin B; cell inva 99.6 6.9E-15 2.4E-19 152.8 11.7 182 167-407 28-209 (605)
96 1z7x_W Ribonuclease inhibitor; 99.6 4E-16 1.4E-20 158.3 1.7 292 165-472 33-383 (461)
97 3m19_A Variable lymphocyte rec 99.5 1.3E-13 4.6E-18 127.5 15.6 123 145-271 19-143 (251)
98 3ogk_B Coronatine-insensitive 99.5 5.7E-15 2E-19 154.8 6.5 129 324-468 403-548 (592)
99 1xeu_A Internalin C; cellular 99.5 1.3E-13 4.6E-18 128.3 11.6 95 165-271 24-118 (263)
100 2o6s_A Variable lymphocyte rec 99.5 4.1E-13 1.4E-17 120.5 14.2 160 165-404 12-174 (208)
101 4ezg_A Putative uncharacterize 99.5 1.4E-13 4.8E-18 122.4 10.4 60 343-405 131-191 (197)
102 3goz_A Leucine-rich repeat-con 99.5 6.3E-14 2.2E-18 137.2 8.8 225 165-406 27-295 (362)
103 1z6t_A APAF-1, apoptotic prote 99.5 2.9E-14 1E-18 149.2 6.6 127 1-134 313-448 (591)
104 4ezg_A Putative uncharacterize 99.5 4.4E-13 1.5E-17 119.1 12.7 151 181-382 41-191 (197)
105 4glp_A Monocyte differentiatio 99.5 1.1E-13 3.8E-18 132.4 9.5 198 165-406 96-305 (310)
106 2p1m_B Transport inhibitor res 99.5 3.2E-14 1.1E-18 149.1 5.5 58 322-381 287-347 (594)
107 1m9s_A Internalin B; cell inva 99.5 4.9E-13 1.7E-17 138.9 14.1 160 165-382 48-207 (605)
108 2o6s_A Variable lymphocyte rec 99.4 4.3E-13 1.5E-17 120.3 11.8 178 187-459 10-190 (208)
109 3cvr_A Invasion plasmid antige 99.4 1E-12 3.4E-17 135.1 15.4 176 185-446 60-242 (571)
110 3cvr_A Invasion plasmid antige 99.4 1.3E-12 4.4E-17 134.3 15.3 176 165-412 64-247 (571)
111 2v9t_B SLIT homolog 2 protein 99.4 8.3E-13 2.8E-17 119.4 12.3 99 165-271 16-116 (220)
112 3e6j_A Variable lymphocyte rec 99.4 1.2E-12 4E-17 119.3 13.0 100 165-271 24-124 (229)
113 2p1m_B Transport inhibitor res 99.4 3.1E-14 1E-18 149.3 1.9 77 165-241 161-245 (594)
114 1xeu_A Internalin C; cellular 99.4 2.9E-13 1E-17 126.0 7.9 167 182-406 17-183 (263)
115 2v70_A SLIT-2, SLIT homolog 2 99.4 3.1E-12 1E-16 115.7 13.2 99 165-271 16-117 (220)
116 2v9t_B SLIT homolog 2 protein 99.4 4.1E-12 1.4E-16 114.9 12.8 78 187-271 14-92 (220)
117 1dce_A Protein (RAB geranylger 99.4 3.8E-14 1.3E-18 146.3 -1.0 210 205-464 346-566 (567)
118 2xot_A Amphoterin-induced prot 99.3 2.6E-12 8.9E-17 125.6 11.1 100 164-271 22-124 (361)
119 3e6j_A Variable lymphocyte rec 99.3 1.2E-11 4E-16 112.6 13.9 79 186-271 21-100 (229)
120 2v70_A SLIT-2, SLIT homolog 2 99.3 9.8E-12 3.3E-16 112.4 13.0 78 187-271 14-93 (220)
121 2xot_A Amphoterin-induced prot 99.3 5.3E-12 1.8E-16 123.4 10.9 123 145-272 23-149 (361)
122 2ell_A Acidic leucine-rich nuc 99.3 1.1E-11 3.6E-16 107.0 9.2 84 182-271 22-107 (168)
123 4b8c_D Glucose-repressible alc 99.3 1.6E-12 5.6E-17 138.4 4.8 85 180-270 220-304 (727)
124 2je0_A Acidic leucine-rich nuc 99.2 1.2E-11 4.1E-16 104.4 7.4 83 183-271 16-100 (149)
125 2wfh_A SLIT homolog 2 protein 99.2 1.5E-10 5.2E-15 102.1 12.3 97 165-269 15-112 (193)
126 1a9n_A U2A', U2A'; complex (nu 99.2 2.4E-11 8.1E-16 105.7 6.2 85 180-271 15-100 (176)
127 2je0_A Acidic leucine-rich nuc 99.2 6.4E-11 2.2E-15 99.8 8.5 101 164-271 21-125 (149)
128 2ell_A Acidic leucine-rich nuc 99.2 3.3E-10 1.1E-14 97.6 12.8 127 165-310 29-159 (168)
129 1w8a_A SLIT protein; signaling 99.2 1.8E-10 6.2E-15 101.6 11.3 77 187-270 11-89 (192)
130 2wfh_A SLIT homolog 2 protein 99.1 2.3E-10 7.8E-15 101.0 11.6 121 145-271 15-138 (193)
131 1dce_A Protein (RAB geranylger 99.1 7.2E-11 2.5E-15 121.8 9.1 78 186-271 443-520 (567)
132 2o6r_A Variable lymphocyte rec 99.1 3.6E-10 1.2E-14 98.2 11.6 103 164-271 32-136 (177)
133 1w8a_A SLIT protein; signaling 99.1 1.6E-10 5.3E-15 102.0 9.1 103 165-271 34-138 (192)
134 2r9u_A Variable lymphocyte rec 99.1 2.9E-10 9.8E-15 98.4 9.1 101 164-272 16-118 (174)
135 1a9n_A U2A', U2A'; complex (nu 99.1 4.1E-10 1.4E-14 97.8 9.2 100 165-271 24-125 (176)
136 3g39_A Variable lymphocyte rec 99.1 4.6E-10 1.6E-14 96.8 9.1 101 164-272 13-115 (170)
137 4b8c_D Glucose-repressible alc 99.0 3.4E-10 1.2E-14 120.5 9.1 102 165-273 229-330 (727)
138 2o6r_A Variable lymphocyte rec 99.0 2.8E-09 9.4E-14 92.6 12.0 96 165-268 12-109 (177)
139 3sb4_A Hypothetical leucine ri 99.0 1.6E-09 5.5E-14 104.3 11.3 98 347-463 225-326 (329)
140 1ds9_A Outer arm dynein; leuci 99.0 2.1E-11 7.2E-16 108.2 -2.3 67 199-271 39-105 (198)
141 3sb4_A Hypothetical leucine ri 98.9 6.9E-09 2.4E-13 99.8 11.9 99 323-440 225-327 (329)
142 1ds9_A Outer arm dynein; leuci 98.9 7.9E-11 2.7E-15 104.5 -2.2 113 171-306 36-148 (198)
143 2r9u_A Variable lymphocyte rec 98.9 1.1E-08 3.6E-13 88.5 10.3 99 144-243 16-117 (174)
144 3g39_A Variable lymphocyte rec 98.8 1.9E-08 6.4E-13 86.6 9.3 97 146-243 15-114 (170)
145 2ifg_A High affinity nerve gro 98.7 2.4E-08 8.3E-13 96.8 9.6 100 165-272 13-116 (347)
146 4fdw_A Leucine rich hypothetic 98.7 5.1E-07 1.8E-11 88.8 16.7 249 170-494 122-381 (401)
147 4fdw_A Leucine rich hypothetic 98.6 3E-06 1E-10 83.4 18.9 208 171-451 145-361 (401)
148 2ifg_A High affinity nerve gro 98.4 5E-07 1.7E-11 87.4 8.7 96 147-243 15-115 (347)
149 3e4g_A ATP synthase subunit S, 98.4 2.3E-07 7.8E-12 78.9 4.4 62 349-410 62-129 (176)
150 3e4g_A ATP synthase subunit S, 98.3 5.6E-07 1.9E-11 76.5 4.8 87 324-411 61-155 (176)
151 3un9_A NLR family member X1; l 98.3 5.8E-08 2E-12 94.7 -1.7 15 347-361 238-252 (372)
152 2ra8_A Uncharacterized protein 98.3 1.3E-06 4.4E-11 84.5 7.6 162 203-406 134-318 (362)
153 2ra8_A Uncharacterized protein 98.1 3.1E-06 1.1E-10 81.7 5.5 128 325-468 173-317 (362)
154 3un9_A NLR family member X1; l 98.0 3.4E-07 1.2E-11 89.2 -1.7 88 183-271 71-167 (372)
155 3rw6_A Nuclear RNA export fact 97.9 1.5E-05 5.2E-10 72.9 6.0 82 181-267 167-259 (267)
156 1io0_A Tropomodulin; LRR prote 97.6 5.4E-05 1.8E-09 65.7 4.9 93 178-271 30-135 (185)
157 4fs7_A Uncharacterized protein 97.5 0.0034 1.2E-07 61.4 17.2 44 172-217 59-103 (394)
158 4gt6_A Cell surface protein; l 97.4 0.0032 1.1E-07 61.6 15.6 90 172-267 75-168 (394)
159 4fs7_A Uncharacterized protein 97.4 0.00051 1.8E-08 67.3 9.4 59 203-267 157-216 (394)
160 1io0_A Tropomodulin; LRR prote 97.2 0.00017 5.7E-09 62.5 3.2 105 165-271 41-163 (185)
161 3rw6_A Nuclear RNA export fact 97.1 0.00053 1.8E-08 62.7 6.1 85 180-271 137-232 (267)
162 4gt6_A Cell surface protein; l 97.0 0.011 3.9E-07 57.7 14.8 89 171-268 101-191 (394)
163 4h09_A Hypothetical leucine ri 96.7 0.06 2E-06 52.1 16.7 68 170-241 55-123 (379)
164 3rfe_A Platelet glycoprotein I 95.4 0.027 9.3E-07 45.1 5.9 52 188-242 12-66 (130)
165 3rfe_A Platelet glycoprotein I 94.8 0.036 1.2E-06 44.4 5.0 55 211-271 11-67 (130)
166 4h09_A Hypothetical leucine ri 92.3 0.2 7E-06 48.2 6.6 90 172-268 228-319 (379)
167 1pgv_A TMD-1, tropomodulin TMD 90.3 0.3 1E-05 42.0 4.7 91 178-269 35-136 (197)
168 1pgv_A TMD-1, tropomodulin TMD 87.6 0.32 1.1E-05 41.8 3.0 67 205-271 38-110 (197)
169 2fna_A Conserved hypothetical 85.6 1.1 3.7E-05 42.4 6.0 115 1-130 235-355 (357)
170 2qen_A Walker-type ATPase; unk 78.9 2.2 7.5E-05 40.1 5.3 113 2-130 232-347 (350)
171 2vda_B Maltoporin; sugar trans 48.0 17 0.00059 18.8 2.4 19 3-21 6-24 (28)
172 1hqc_A RUVB; extended AAA-ATPa 43.5 11 0.00038 34.8 2.5 17 100-116 307-324 (324)
173 2lz0_A Uncharacterized protein 42.6 28 0.00095 25.8 4.1 47 169-217 5-52 (100)
174 1w5s_A Origin recognition comp 36.8 22 0.00074 34.0 3.5 65 51-116 297-370 (412)
175 2kz2_A Calmodulin, CAM; TR2C, 22.2 2.1E+02 0.0072 20.1 8.8 84 5-90 8-91 (94)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=2.2e-23 Score=201.50 Aligned_cols=241 Identities=18% Similarity=0.247 Sum_probs=185.7
Q ss_pred CCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCC
Q 010089 182 SLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKL 261 (518)
Q Consensus 182 ~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L 261 (518)
...++++|+++++ .+..+|..++++++|++|++++|.++.+|..++++++|++|++++|.. ..+|.. ++++++|
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l----~~lp~~-l~~l~~L 152 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL----RALPAS-IASLNRL 152 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCC----CCCCGG-GGGCTTC
T ss_pred cccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcc----ccCcHH-HhcCcCC
Confidence 3578899999999 778999999999999999999999999999999999999999999876 678876 8899999
Q ss_pred cEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhhccceeecccCCCCCccc
Q 010089 262 QVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNL 341 (518)
Q Consensus 262 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~~ 341 (518)
++|++.+|.... ..+.. + .... ..
T Consensus 153 ~~L~L~~n~~~~------------~~p~~---~--------------------------------~~~~---------~~ 176 (328)
T 4fcg_A 153 RELSIRACPELT------------ELPEP---L--------------------------------ASTD---------AS 176 (328)
T ss_dssp CEEEEEEETTCC------------CCCSC---S--------------------------------EEEC----------C
T ss_pred CEEECCCCCCcc------------ccChh---H--------------------------------hhcc---------ch
Confidence 999998875421 00000 0 0000 01
Q ss_pred cccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCc-ccccCCCccEEEEecCcchhhhhcccchhcc
Q 010089 342 LHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT-WLVFVPNLKWLQIFNCDDMEEIISVEKFEKL 420 (518)
Q Consensus 342 ~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~ 420 (518)
..+..+++|+.|++++|.++. .|.++..+++|++|++++|. +..+| .+..+++|++|++++|.....++.
T Consensus 177 ~~~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~------- 247 (328)
T 4fcg_A 177 GEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPP------- 247 (328)
T ss_dssp CCEEESTTCCEEEEEEECCCC-CCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCC-------
T ss_pred hhhccCCCCCEEECcCCCcCc-chHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHH-------
Confidence 234567788888888887774 56668888888999998884 44444 677888999999988876655443
Q ss_pred ccccccCCCCccCCCcceeeccCCccccccCCCCCCCCCcceEeccCCCCCcCCCCCCCCCCCcceEEEchhhhhccCcc
Q 010089 421 GEVSEMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGISECPKLKKLPLNSSSAKGRKIVIYGEKEWWEELQW 500 (518)
Q Consensus 421 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~~~~~~~~~~~~ 500 (518)
.++.+++|++|++++|.....+|..+..+++|+.|++++|+.+..+|..+..+ .+++++..+..+...+.+
T Consensus 248 --------~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L-~~L~~l~l~~~~~~~l~~ 318 (328)
T 4fcg_A 248 --------IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL-PANCIILVPPHLQAQLDQ 318 (328)
T ss_dssp --------CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS-CTTCEEECCGGGSCC---
T ss_pred --------HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc-cCceEEeCCHHHHHHHhh
Confidence 66788999999999988888888888889999999999999999999888887 578888888877777665
Q ss_pred Cc
Q 010089 501 ED 502 (518)
Q Consensus 501 ~~ 502 (518)
..
T Consensus 319 ~~ 320 (328)
T 4fcg_A 319 HR 320 (328)
T ss_dssp --
T ss_pred hh
Confidence 43
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.5e-22 Score=197.93 Aligned_cols=275 Identities=17% Similarity=0.207 Sum_probs=188.3
Q ss_pred cCcCCCCCCchhhhhhe--eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccch
Q 010089 148 AGVGLTDAPKIEEWEGT--LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQ 225 (518)
Q Consensus 148 ~~~~~~~~~~~~~~~~~--l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~ 225 (518)
.+.....++........ +++.+|++..+++ +..+++|++|++++| .+..+| .+..+++|++|++++|.+..+|.
T Consensus 52 ~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~ 127 (347)
T 4fmz_A 52 AGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDNISDISP 127 (347)
T ss_dssp CSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTSCCCCCGG
T ss_pred eCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCCcccCchh
Confidence 33444444444433333 7788888887766 788888888888888 666665 68888888888888888888776
Q ss_pred hhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEE
Q 010089 226 ELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIAL 305 (518)
Q Consensus 226 ~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~ 305 (518)
+..+++|++|++++|... ..++. +..+++|++|++.+|.... .+ .+..+++|+.+++
T Consensus 128 -~~~l~~L~~L~l~~n~~~---~~~~~--~~~l~~L~~L~l~~~~~~~-------------~~----~~~~l~~L~~L~l 184 (347)
T 4fmz_A 128 -LANLTKMYSLNLGANHNL---SDLSP--LSNMTGLNYLTVTESKVKD-------------VT----PIANLTDLYSLSL 184 (347)
T ss_dssp -GTTCTTCCEEECTTCTTC---CCCGG--GTTCTTCCEEECCSSCCCC-------------CG----GGGGCTTCSEEEC
T ss_pred -hccCCceeEEECCCCCCc---ccccc--hhhCCCCcEEEecCCCcCC-------------ch----hhccCCCCCEEEc
Confidence 788888888888888664 55554 7888888888888876632 11 1556667777766
Q ss_pred EEecCccccccccCcchhhccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCC
Q 010089 306 SLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNV 385 (518)
Q Consensus 306 ~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l 385 (518)
+.+.......+ .....++.|+++++.. .... .+..+++|+.|++++|.++...+ +..+++|++|++++| .+
T Consensus 185 ~~n~l~~~~~~----~~l~~L~~L~l~~n~l-~~~~-~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n-~l 255 (347)
T 4fmz_A 185 NYNQIEDISPL----ASLTSLHYFTAYVNQI-TDIT-PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN-QI 255 (347)
T ss_dssp TTSCCCCCGGG----GGCTTCCEEECCSSCC-CCCG-GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CC
T ss_pred cCCcccccccc----cCCCccceeecccCCC-CCCc-hhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCC-cc
Confidence 54443332222 2224567888877642 3332 26777888888888887776433 677888888888887 56
Q ss_pred CCCcccccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCCCCCCCCcceEec
Q 010089 386 KDLTWLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGI 465 (518)
Q Consensus 386 ~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i 465 (518)
..++.+..+++|++|++++|. +..++ ....+++|+.|++++|.--...+.....+++|+.|++
T Consensus 256 ~~~~~~~~l~~L~~L~l~~n~-l~~~~----------------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 256 SDINAVKDLTKLKMLNVGSNQ-ISDIS----------------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318 (347)
T ss_dssp CCCGGGTTCTTCCEEECCSSC-CCCCG----------------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC
T ss_pred CCChhHhcCCCcCEEEccCCc-cCCCh----------------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEc
Confidence 667777788888888888863 33331 3456788888888887433333334566888888888
Q ss_pred cCCCCCcCCCC
Q 010089 466 SECPKLKKLPL 476 (518)
Q Consensus 466 ~~C~~L~~lp~ 476 (518)
++|+ ++.+|.
T Consensus 319 ~~n~-l~~~~~ 328 (347)
T 4fmz_A 319 SQNH-ITDIRP 328 (347)
T ss_dssp CSSS-CCCCGG
T ss_pred cCCc-cccccC
Confidence 8884 666654
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=9.6e-23 Score=206.94 Aligned_cols=312 Identities=16% Similarity=0.166 Sum_probs=205.1
Q ss_pred EEecCcCCCCCCchhhhhheeecccccccccChhhhCCCCCCcEEEeecCCCcCcc-CccccCccccCEEecCCCcCCcc
Q 010089 145 LVRAGVGLTDAPKIEEWEGTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVRGL 223 (518)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~l 223 (518)
+...+..+..+|.....-+.+++++|.+..+++..|.++++|++|++++|.....+ |..+.++++|++|++++|.++.+
T Consensus 15 ~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ 94 (455)
T 3v47_A 15 AICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94 (455)
T ss_dssp EECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE
T ss_pred cCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc
Confidence 44455566777775444455999999999987777999999999999999544355 56789999999999999998885
Q ss_pred -chhhhcCCCCcEeeccCCcccccccCCc-hhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccc
Q 010089 224 -PQELKALVNLRYLNLDYTNEMCKMCKIP-EQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLN 301 (518)
Q Consensus 224 -p~~i~~L~~L~~L~l~~~~~l~~~~~lp-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 301 (518)
|..++++++|++|++++|... ..+| ...+..+++|++|++.+|...... +.. .+..+++|+
T Consensus 95 ~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~------------~~~--~~~~l~~L~ 157 (455)
T 3v47_A 95 ETGAFNGLANLEVLTLTQCNLD---GAVLSGNFFKPLTSLEMLVLRDNNIKKIQ------------PAS--FFLNMRRFH 157 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCB---THHHHSSTTTTCTTCCEEECCSSBCCSCC------------CCG--GGGGCTTCC
T ss_pred ChhhccCcccCCEEeCCCCCCC---ccccCcccccCcccCCEEECCCCccCccC------------ccc--ccCCCCccc
Confidence 778999999999999998763 2222 233778899999999988764321 100 023344444
Q ss_pred eEEEEEecCccc--cccccC------------------------------cchhhccceeecccCCCCCccccc------
Q 010089 302 LIALSLRGSRGV--ENFLKF------------------------------PKLQNITQALHIKDCNSLPLNLLH------ 343 (518)
Q Consensus 302 ~l~~~~~~~~~~--~~l~~~------------------------------~~l~~~L~~L~l~~~~~~~~~~~~------ 343 (518)
.++++.+..... ..+... ......|++|+++++......+..
T Consensus 158 ~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 237 (455)
T 3v47_A 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA 237 (455)
T ss_dssp EEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTT
T ss_pred EEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccc
Confidence 444432221110 000000 001134666666665321111100
Q ss_pred -------------------------------cc--cccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCc-
Q 010089 344 -------------------------------LA--NMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT- 389 (518)
Q Consensus 344 -------------------------------l~--~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~- 389 (518)
+. ..++|+.|++++|.+....+.++..+++|+.|++++|.-....+
T Consensus 238 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 317 (455)
T 3v47_A 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317 (455)
T ss_dssp TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred ccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh
Confidence 11 12578888888888777778888888999999998884333333
Q ss_pred ccccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCcccccc-CCCCCCCCCcceEeccCC
Q 010089 390 WLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRI-YRDPLPFPHLERIGISEC 468 (518)
Q Consensus 390 ~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~i~~C 468 (518)
.+..+++|++|++++|. +..++. ..+..+++|++|+++++ .+..+ +.....+++|+.|++++|
T Consensus 318 ~~~~l~~L~~L~Ls~N~-l~~~~~--------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 318 AFWGLTHLLKLNLSQNF-LGSIDS--------------RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN 381 (455)
T ss_dssp TTTTCTTCCEEECCSSC-CCEECG--------------GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred HhcCcccCCEEECCCCc-cCCcCh--------------hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC
Confidence 57788999999998874 333321 14567889999999987 55555 556778899999999986
Q ss_pred CCCcCCCCCC-CCCCCcceEEEch
Q 010089 469 PKLKKLPLNS-SSAKGRKIVIYGE 491 (518)
Q Consensus 469 ~~L~~lp~~~-~~~~~~l~~~~~~ 491 (518)
+++.+|... ..+ .+|+.++..
T Consensus 382 -~l~~~~~~~~~~l-~~L~~L~l~ 403 (455)
T 3v47_A 382 -QLKSVPDGIFDRL-TSLQKIWLH 403 (455)
T ss_dssp -CCSCCCTTTTTTC-TTCCEEECC
T ss_pred -ccccCCHhHhccC-CcccEEEcc
Confidence 788887654 233 355555443
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=6e-23 Score=198.47 Aligned_cols=215 Identities=22% Similarity=0.307 Sum_probs=154.0
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCccc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEM 244 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l 244 (518)
+++.+|++..+|+. +.++++|++|++++| .+..+|..++++++|++|++++|.++.+|..++++++|++|++++|...
T Consensus 86 L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~ 163 (328)
T 4fcg_A 86 LELRSVPLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPEL 163 (328)
T ss_dssp EEEESSCCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTC
T ss_pred EEccCCCchhcChh-hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCc
Confidence 88999999999987 667999999999999 6779999999999999999999999999999999999999999998776
Q ss_pred ccccCCchhhhcC---------CCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccc
Q 010089 245 CKMCKIPEQLISS---------FSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVEN 315 (518)
Q Consensus 245 ~~~~~lp~~~~~~---------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~ 315 (518)
..+|.. +.. +++|++|++.+|..
T Consensus 164 ---~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l-------------------------------------------- 195 (328)
T 4fcg_A 164 ---TELPEP-LASTDASGEHQGLVNLQSLRLEWTGI-------------------------------------------- 195 (328)
T ss_dssp ---CCCCSC-SEEEC-CCCEEESTTCCEEEEEEECC--------------------------------------------
T ss_pred ---cccChh-HhhccchhhhccCCCCCEEECcCCCc--------------------------------------------
Confidence 777775 332 44444444444332
Q ss_pred cccCcchhhccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCc-ccccC
Q 010089 316 FLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT-WLVFV 394 (518)
Q Consensus 316 l~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l 394 (518)
..++..+..+++|+.|++++|.+.. .|..+..+++|+.|++++|.....+| .+..+
T Consensus 196 ----------------------~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l 252 (328)
T 4fcg_A 196 ----------------------RSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252 (328)
T ss_dssp ----------------------CCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred ----------------------CcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCC
Confidence 2222344555666666666665554 33345666666666666665555554 45666
Q ss_pred CCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCCCCCCCCcceEeccC
Q 010089 395 PNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGISE 467 (518)
Q Consensus 395 ~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~ 467 (518)
++|+.|+|++|.....++. .+..+++|+.|++++|+.+..+|..++.+++|+.+.+..
T Consensus 253 ~~L~~L~L~~n~~~~~~p~---------------~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 253 APLKRLILKDCSNLLTLPL---------------DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCCCEEECTTCTTCCBCCT---------------TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCCCEEECCCCCchhhcch---------------hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 7777777776665544432 455667777777777777777777666777777666653
No 5
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=6e-22 Score=204.57 Aligned_cols=332 Identities=17% Similarity=0.139 Sum_probs=194.6
Q ss_pred ecCcCCCCCCchhh-hhheeecccccccccChhhhCCCCCCcEEEeecCCCcCcc-CccccCccccCEEecCCCcCCccc
Q 010089 147 RAGVGLTDAPKIEE-WEGTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVRGLP 224 (518)
Q Consensus 147 ~~~~~~~~~~~~~~-~~~~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~lp 224 (518)
..+..+..+|.... .-+.+++++|++..+++..|.++++|++|++++| .+..+ |..++++++|++|++++|.++++|
T Consensus 7 ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 85 (520)
T 2z7x_B 7 RSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLVKIS 85 (520)
T ss_dssp CTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCCCEEE
T ss_pred cCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCceeecC
Confidence 34445555554222 2233899999999999888999999999999999 55554 788999999999999999999999
Q ss_pred hhhhcCCCCcEeeccCCccccccc-CCchhhhcCCCCCcEEeccccCCCCcccccc-----------CCCC--cchhhhh
Q 010089 225 QELKALVNLRYLNLDYTNEMCKMC-KIPEQLISSFSKLQVLRMLHCGSNHWPIAEE-----------GNVL--SDDAESL 290 (518)
Q Consensus 225 ~~i~~L~~L~~L~l~~~~~l~~~~-~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----------~~~~--~~~~~~~ 290 (518)
.. .+++|++|++++|... . .+|.. ++++++|++|++++|.......... .+.. ....+..
T Consensus 86 ~~--~l~~L~~L~L~~N~l~---~~~~p~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~ 159 (520)
T 2z7x_B 86 CH--PTVNLKHLDLSFNAFD---ALPICKE-FGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEG 159 (520)
T ss_dssp CC--CCCCCSEEECCSSCCS---SCCCCGG-GGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTT
T ss_pred cc--ccCCccEEeccCCccc---cccchhh-hccCCcceEEEecCcccchhhccccccceeeEEEeeccccccccccccc
Confidence 87 8999999999999763 2 35665 8999999999999887643111000 0000 0001111
Q ss_pred HH-----------------------------------------------------Hhhcccc------------------
Q 010089 291 MK-----------------------------------------------------EIHCLEQ------------------ 299 (518)
Q Consensus 291 ~~-----------------------------------------------------~l~~L~~------------------ 299 (518)
+. .+..+++
T Consensus 160 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~ 239 (520)
T 2z7x_B 160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR 239 (520)
T ss_dssp TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHH
T ss_pred ccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHH
Confidence 11 1111222
Q ss_pred ---------cceEEEEEecCc-cccc-c-----ccCcch------------h----------hccceeecccCCCCCccc
Q 010089 300 ---------LNLIALSLRGSR-GVEN-F-----LKFPKL------------Q----------NITQALHIKDCNSLPLNL 341 (518)
Q Consensus 300 ---------L~~l~~~~~~~~-~~~~-l-----~~~~~l------------~----------~~L~~L~l~~~~~~~~~~ 341 (518)
|+.++++.+... ..+. + ..+..+ . ..++.|+++++.. ...
T Consensus 240 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l-~~~- 317 (520)
T 2z7x_B 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM-VHM- 317 (520)
T ss_dssp HHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCC-CCC-
T ss_pred HHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcc-ccc-
Confidence 222222111100 0000 0 000000 0 1123333333221 110
Q ss_pred cccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCc----ccccCCCccEEEEecCcchhhhhcc--c
Q 010089 342 LHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT----WLVFVPNLKWLQIFNCDDMEEIISV--E 415 (518)
Q Consensus 342 ~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~----~l~~l~~L~~L~L~~c~~l~~~~~~--~ 415 (518)
.....+++|+.|++++|.+....|.++..+++|+.|++++| .+..++ .+..+++|++|+++++.....++.. .
T Consensus 318 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp CCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred cchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence 01145677777777777766656666777777888877777 344322 3566777777777776533223321 0
Q ss_pred chhccccc--cc--cC-CCCccC-CCcceeeccCCccccccCCCCCCCCCcceEeccCCCCCcCCCCC-CCCCCCcceEE
Q 010089 416 KFEKLGEV--SE--MM-GEPILF-SELELLVISNASNLKRIYRDPLPFPHLERIGISECPKLKKLPLN-SSSAKGRKIVI 488 (518)
Q Consensus 416 ~~~~~~~l--~~--~~-~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~-~~~~~~~l~~~ 488 (518)
....+..+ ++ +. .....+ ++|+.|+++++ .++.+|.....+++|+.|++++| +++.+|.. +..+ .+++.+
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l-~~L~~L 473 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRL-TSLQKI 473 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTC-TTCCEE
T ss_pred cCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccC-CcccEE
Confidence 11111111 00 00 001122 68999999986 77888887778999999999998 88899987 4444 345544
Q ss_pred Ech
Q 010089 489 YGE 491 (518)
Q Consensus 489 ~~~ 491 (518)
+..
T Consensus 474 ~l~ 476 (520)
T 2z7x_B 474 WLH 476 (520)
T ss_dssp ECC
T ss_pred ECc
Confidence 433
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=4.9e-22 Score=202.93 Aligned_cols=293 Identities=15% Similarity=0.163 Sum_probs=206.8
Q ss_pred EEecCcCCCCCCchh-hhhheeecccccccccChhhhCCCCCCcEEEeecCCCcCcc-CccccCccccCEEecCCCcCCc
Q 010089 145 LVRAGVGLTDAPKIE-EWEGTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVRG 222 (518)
Q Consensus 145 ~~~~~~~~~~~~~~~-~~~~~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~ 222 (518)
+...+..+..+|... ...+.+++++|++..+++..|.++++|++|++++| .+..+ |..++++++|++|++++|.++.
T Consensus 16 v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 94 (477)
T 2id5_A 16 VLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKL 94 (477)
T ss_dssp EECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred EEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCc
Confidence 344445556666422 22344999999999998888999999999999999 55554 8889999999999999999999
Q ss_pred cchh-hhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccc
Q 010089 223 LPQE-LKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLN 301 (518)
Q Consensus 223 lp~~-i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 301 (518)
+|.. +.++++|++|++++|.. ..++...+..+++|++|++.+|..... . ...+..+++|+
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~---~~~~~~l~~L~ 155 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISENKI----VILLDYMFQDLYNLKSLEVGDNDLVYI------------S---HRAFSGLNSLE 155 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTSCC----CEECTTTTTTCTTCCEEEECCTTCCEE------------C---TTSSTTCTTCC
T ss_pred cCcccccCCCCCCEEECCCCcc----ccCChhHccccccCCEEECCCCcccee------------C---hhhccCCCCCC
Confidence 8875 68999999999999976 445444589999999999998876321 1 12345667777
Q ss_pred eEEEEEecCccccccccCcchhhccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEec
Q 010089 302 LIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVN 381 (518)
Q Consensus 302 ~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 381 (518)
.+++..+....... ........|+.|+++++......+..+..+++|+.|++++|......+.......+|++|++++
T Consensus 156 ~L~l~~n~l~~~~~--~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 233 (477)
T 2id5_A 156 QLTLEKCNLTSIPT--EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233 (477)
T ss_dssp EEEEESCCCSSCCH--HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEES
T ss_pred EEECCCCcCcccCh--hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcC
Confidence 77777554332211 0011224578888888753222235677788899999988833333444444455888999988
Q ss_pred CCCCCCCc--ccccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCcccccc-CCCCCCCC
Q 010089 382 CSNVKDLT--WLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRI-YRDPLPFP 458 (518)
Q Consensus 382 c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~ 458 (518)
| .+..++ .+..+++|+.|+|+++. +..++. ..+..+++|+.|.+.++ .+..+ +.....++
T Consensus 234 n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~ 296 (477)
T 2id5_A 234 C-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG--------------SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLN 296 (477)
T ss_dssp S-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECT--------------TSCTTCTTCCEEECCSS-CCSEECTTTBTTCT
T ss_pred C-cccccCHHHhcCccccCeeECCCCc-CCccCh--------------hhccccccCCEEECCCC-ccceECHHHhcCcc
Confidence 8 566666 46778889999998865 333322 14567788888888886 45554 44566788
Q ss_pred CcceEeccCCCCCcCCCCC
Q 010089 459 HLERIGISECPKLKKLPLN 477 (518)
Q Consensus 459 ~L~~L~i~~C~~L~~lp~~ 477 (518)
+|+.|++++| +++.+|..
T Consensus 297 ~L~~L~L~~N-~l~~~~~~ 314 (477)
T 2id5_A 297 YLRVLNVSGN-QLTTLEES 314 (477)
T ss_dssp TCCEEECCSS-CCSCCCGG
T ss_pred cCCEEECCCC-cCceeCHh
Confidence 8888888887 77777754
No 7
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=1.3e-21 Score=203.94 Aligned_cols=121 Identities=25% Similarity=0.279 Sum_probs=99.0
Q ss_pred eEEecCcCCCCCCchh-hhhheeecccccccccChhhhCCCCCCcEEEeecCCCcCcc-CccccCccccCEEecCCCcCC
Q 010089 144 FLVRAGVGLTDAPKIE-EWEGTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVR 221 (518)
Q Consensus 144 ~~~~~~~~~~~~~~~~-~~~~~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~ 221 (518)
.+...+..+..+|... ...+.+++++|.+..+++..|.++++|++|++++| .+..+ |..++++++|++|++++|.++
T Consensus 35 ~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 113 (562)
T 3a79_B 35 MVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQ 113 (562)
T ss_dssp EEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred EEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcCC
Confidence 4445555666666532 22334999999999999888999999999999999 55555 778999999999999999999
Q ss_pred ccchhhhcCCCCcEeeccCCcccccccCCc--hhhhcCCCCCcEEeccccCCC
Q 010089 222 GLPQELKALVNLRYLNLDYTNEMCKMCKIP--EQLISSFSKLQVLRMLHCGSN 272 (518)
Q Consensus 222 ~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp--~~~~~~l~~L~~L~l~~~~~~ 272 (518)
.+|.. .+++|++|++++|.. ..+| .. ++++++|++|++.++...
T Consensus 114 ~lp~~--~l~~L~~L~Ls~N~l----~~l~~p~~-~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 114 NISCC--PMASLRHLDLSFNDF----DVLPVCKE-FGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp EECSC--CCTTCSEEECCSSCC----SBCCCCGG-GGGCTTCCEEEEECSBCC
T ss_pred ccCcc--ccccCCEEECCCCCc----cccCchHh-hcccCcccEEecCCCccc
Confidence 99987 899999999999976 5544 44 899999999999998764
No 8
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=2.7e-22 Score=199.29 Aligned_cols=268 Identities=15% Similarity=0.193 Sum_probs=153.9
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccC-ccccCccccCEEecCCCcCCccch-hhhcCCCCcEeeccCCc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDLSSTKVRGLPQ-ELKALVNLRYLNLDYTN 242 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 242 (518)
+++.++.+..+|+.+|..+++|++|++++| .+..+| ..++.+++|++|++++|.++.+|. .++++++|++|++++|.
T Consensus 50 l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 128 (390)
T 3o6n_A 50 VTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 128 (390)
T ss_dssp EEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc
Confidence 555555555555555555555666666555 333333 345555556666665555555432 34555555666555554
Q ss_pred ccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCcccc--cccc--
Q 010089 243 EMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVE--NFLK-- 318 (518)
Q Consensus 243 ~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~--~l~~-- 318 (518)
. ..+|.+.+.++++|++|++.+|.....+ + ..+..+++|+.++++.+...... .+..
T Consensus 129 l----~~l~~~~~~~l~~L~~L~L~~n~l~~~~------------~---~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~ 189 (390)
T 3o6n_A 129 L----SSLPRGIFHNTPKLTTLSMSNNNLERIE------------D---DTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 189 (390)
T ss_dssp C----CCCCTTTTTTCTTCCEEECCSSCCCBCC------------T---TTTSSCTTCCEEECCSSCCSBCCGGGCTTCS
T ss_pred c----CcCCHHHhcCCCCCcEEECCCCccCccC------------h---hhccCCCCCCEEECCCCcCCccccccccccc
Confidence 3 4555543455555555555555442110 0 11223333333333322211110 0000
Q ss_pred ----------CcchhhccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCC
Q 010089 319 ----------FPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDL 388 (518)
Q Consensus 319 ----------~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l 388 (518)
.......++.|+++++. +...+. ..+++|+.|++++|.++. +.++..+++|++|+++++. +..+
T Consensus 190 ~L~l~~n~l~~~~~~~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~Ls~n~-l~~~ 263 (390)
T 3o6n_A 190 HANVSYNLLSTLAIPIAVEELDASHNS-INVVRG--PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNE-LEKI 263 (390)
T ss_dssp EEECCSSCCSEEECCSSCSEEECCSSC-CCEEEC--CCCSSCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSC-CCEE
T ss_pred eeecccccccccCCCCcceEEECCCCe-eeeccc--cccccccEEECCCCCCcc--cHHHcCCCCccEEECCCCc-CCCc
Confidence 00112346667776653 233322 224678888888887774 3567778888888888874 4433
Q ss_pred -c-ccccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCCCCCCCCcceEecc
Q 010089 389 -T-WLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGIS 466 (518)
Q Consensus 389 -~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~ 466 (518)
+ .+..+++|+.|+++++. +..++ .....+++|++|+++++ .+..++.....+++|+.|+++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~-l~~~~---------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~ 326 (390)
T 3o6n_A 264 MYHPFVKMQRLERLYISNNR-LVALN---------------LYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLD 326 (390)
T ss_dssp ESGGGTTCSSCCEEECCSSC-CCEEE---------------CSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECC
T ss_pred ChhHccccccCCEEECCCCc-CcccC---------------cccCCCCCCCEEECCCC-cceecCccccccCcCCEEECC
Confidence 3 56778888888888864 33332 24567899999999997 777887777788999999999
Q ss_pred CCCCCcCCCC
Q 010089 467 ECPKLKKLPL 476 (518)
Q Consensus 467 ~C~~L~~lp~ 476 (518)
+| +++.+|.
T Consensus 327 ~N-~i~~~~~ 335 (390)
T 3o6n_A 327 HN-SIVTLKL 335 (390)
T ss_dssp SS-CCCCCCC
T ss_pred CC-ccceeCc
Confidence 98 5777763
No 9
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=5.4e-22 Score=197.12 Aligned_cols=273 Identities=18% Similarity=0.168 Sum_probs=198.5
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCcc-CccccCccccCEEecCCCcCCccchhh-hcCCCCcEeeccCCc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVRGLPQEL-KALVNLRYLNLDYTN 242 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~l~~~~ 242 (518)
+++.+|.+..+++..|..+++|++|++++| .+..+ |..++++++|++|++++|.++.+|..+ .++++|++|++++|.
T Consensus 74 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~ 152 (390)
T 3o6n_A 74 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 152 (390)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc
Confidence 899999999999877999999999999999 55555 566899999999999999999999874 899999999999997
Q ss_pred ccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCc-chhhhhHHHhhcccccceEEEEEecCccccccccCcc
Q 010089 243 EMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLS-DDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPK 321 (518)
Q Consensus 243 ~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~ 321 (518)
. ..++...+..+++|++|++.+|.....+......... ......+..+....+|+.++++.+..... .. .
T Consensus 153 l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~---~~--~ 223 (390)
T 3o6n_A 153 L----ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV---RG--P 223 (390)
T ss_dssp C----CBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEE---EC--C
T ss_pred c----CccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeec---cc--c
Confidence 6 5666555899999999999998774321100000000 00000000011112233333332221111 11 1
Q ss_pred hhhccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCc-ccccCCCccEE
Q 010089 322 LQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT-WLVFVPNLKWL 400 (518)
Q Consensus 322 l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L 400 (518)
....|+.|+++++.- ... ..+..+++|+.|++++|.++...+..+..+++|++|+++++ .+..++ ....+++|+.|
T Consensus 224 ~~~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L 300 (390)
T 3o6n_A 224 VNVELTILKLQHNNL-TDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVL 300 (390)
T ss_dssp CCSSCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEE
T ss_pred ccccccEEECCCCCC-ccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEE
Confidence 124689999999853 333 57888999999999999988877888999999999999998 556555 45679999999
Q ss_pred EEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCCCCCCCCcceEeccCCC
Q 010089 401 QIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGISECP 469 (518)
Q Consensus 401 ~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~C~ 469 (518)
++++|. +..++. .+..+++|++|+++++ .+..++ ...+++|+.|++++++
T Consensus 301 ~L~~n~-l~~~~~---------------~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 301 DLSHNH-LLHVER---------------NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp ECCSSC-CCCCGG---------------GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred ECCCCc-ceecCc---------------cccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCC
Confidence 999974 444443 4457899999999997 577665 6678999999999864
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=7.4e-21 Score=200.23 Aligned_cols=126 Identities=17% Similarity=0.127 Sum_probs=95.9
Q ss_pred EEecCcCCCCCCc-hhhhhheeecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCcc
Q 010089 145 LVRAGVGLTDAPK-IEEWEGTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGL 223 (518)
Q Consensus 145 ~~~~~~~~~~~~~-~~~~~~~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~l 223 (518)
+...+.....+|. .....+.+++++|.+..+++..|.++++|++|++++|......|..|+++++|++|++++|.+..+
T Consensus 17 ~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 96 (606)
T 3t6q_A 17 YNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM 96 (606)
T ss_dssp EECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE
T ss_pred EECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccccc
Confidence 3444555566664 223334489999999998877799999999999999944444577889999999999999988875
Q ss_pred -chhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCCCc
Q 010089 224 -PQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHW 274 (518)
Q Consensus 224 -p~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~ 274 (518)
|..++++++|++|++++|.. ..++...++++++|++|++.+|.....
T Consensus 97 ~~~~~~~l~~L~~L~L~~n~i----~~l~~~~~~~l~~L~~L~L~~n~l~~~ 144 (606)
T 3t6q_A 97 AETALSGPKALKHLFFIQTGI----SSIDFIPLHNQKTLESLYLGSNHISSI 144 (606)
T ss_dssp CTTTTSSCTTCCEEECTTSCC----SCGGGSCCTTCTTCCEEECCSSCCCCC
T ss_pred ChhhhcccccccEeeccccCc----ccCCcchhccCCcccEEECCCCccccc
Confidence 66888899999999998876 555433478888888888888876554
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=4.7e-21 Score=187.24 Aligned_cols=272 Identities=17% Similarity=0.214 Sum_probs=207.8
Q ss_pred EEecCcCCCCCCchhhhhhe--eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCc
Q 010089 145 LVRAGVGLTDAPKIEEWEGT--LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRG 222 (518)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~--l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~ 222 (518)
+.-.+..+..++........ +++.+|.+..++. +.++++|++|++++| .+..+|. +..+++|++|++++|....
T Consensus 71 L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~ 146 (347)
T 4fmz_A 71 LNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLS 146 (347)
T ss_dssp EECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCC
T ss_pred EEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCC-cccCchh-hccCCceeEEECCCCCCcc
Confidence 33344445555543333333 8999999988753 999999999999999 6777775 8999999999999995444
Q ss_pred cchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccce
Q 010089 223 LPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNL 302 (518)
Q Consensus 223 lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 302 (518)
.+..+..+++|++|++++|.. ..++. +..+++|++|++.+|.... . ..+..+++|+.
T Consensus 147 ~~~~~~~l~~L~~L~l~~~~~----~~~~~--~~~l~~L~~L~l~~n~l~~-------------~----~~~~~l~~L~~ 203 (347)
T 4fmz_A 147 DLSPLSNMTGLNYLTVTESKV----KDVTP--IANLTDLYSLSLNYNQIED-------------I----SPLASLTSLHY 203 (347)
T ss_dssp CCGGGTTCTTCCEEECCSSCC----CCCGG--GGGCTTCSEEECTTSCCCC-------------C----GGGGGCTTCCE
T ss_pred cccchhhCCCCcEEEecCCCc----CCchh--hccCCCCCEEEccCCcccc-------------c----ccccCCCccce
Confidence 445599999999999999976 66666 8899999999999987632 1 11567778888
Q ss_pred EEEEEecCccccccccCcchhhccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecC
Q 010089 303 IALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNC 382 (518)
Q Consensus 303 l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c 382 (518)
+++..+.......+ .....|+.|++++|. +...+. +..+++|+.|++++|.++.+ +.+..+++|++|++++|
T Consensus 204 L~l~~n~l~~~~~~----~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 204 FTAYVNQITDITPV----ANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp EECCSSCCCCCGGG----GGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS
T ss_pred eecccCCCCCCchh----hcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCC
Confidence 77765544333222 223568999999985 344433 88899999999999988753 45788999999999998
Q ss_pred CCCCCCcccccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCCCCCCCCcce
Q 010089 383 SNVKDLTWLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLER 462 (518)
Q Consensus 383 ~~l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~ 462 (518)
.+..++.+..+++|+.|++++|......+. .+..+++|++|++++|+ +..++. ...+++|+.
T Consensus 276 -~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~ 337 (347)
T 4fmz_A 276 -QISDISVLNNLSQLNSLFLNNNQLGNEDME---------------VIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDS 337 (347)
T ss_dssp -CCCCCGGGGGCTTCSEEECCSSCCCGGGHH---------------HHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSE
T ss_pred -ccCCChhhcCCCCCCEEECcCCcCCCcChh---------------HhhccccCCEEEccCCc-cccccC-hhhhhccce
Confidence 677788889999999999999864333222 45578999999999984 666654 677999999
Q ss_pred EeccCCC
Q 010089 463 IGISECP 469 (518)
Q Consensus 463 L~i~~C~ 469 (518)
|++++|+
T Consensus 338 L~l~~N~ 344 (347)
T 4fmz_A 338 ADFANQV 344 (347)
T ss_dssp ESSSCC-
T ss_pred eehhhhc
Confidence 9999984
No 12
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=1.7e-21 Score=188.99 Aligned_cols=286 Identities=17% Similarity=0.160 Sum_probs=178.2
Q ss_pred cCcCCCCCCchh-hhhheeecccccccccChhhhCCCCCCcEEEeecCCCcCcc-CccccCccccCEEecCCCcCCccch
Q 010089 148 AGVGLTDAPKIE-EWEGTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVRGLPQ 225 (518)
Q Consensus 148 ~~~~~~~~~~~~-~~~~~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~lp~ 225 (518)
.+.....+|... ...+.+++.+|++..+++..|.++++|++|++++| .+..+ |..++++++|++|++++|.++.+|.
T Consensus 41 ~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 119 (332)
T 2ft3_A 41 SDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLVEIPP 119 (332)
T ss_dssp CSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSCCCSCCS
T ss_pred CCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCcCCccCc
Confidence 333444444322 12233888888888887777888888888888888 45444 7778888888888888888888887
Q ss_pred hhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEE
Q 010089 226 ELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIAL 305 (518)
Q Consensus 226 ~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~ 305 (518)
.+. ++|++|++++|.. ..+|.+.+..+++|++|++.+|.... .......+..+ +|+.+++
T Consensus 120 ~~~--~~L~~L~l~~n~i----~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 120 NLP--SSLVELRIHDNRI----RKVPKGVFSGLRNMNCIEMGGNPLEN-------------SGFEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp SCC--TTCCEEECCSSCC----CCCCSGGGSSCSSCCEEECCSCCCBG-------------GGSCTTSSCSC-CCSCCBC
T ss_pred ccc--ccCCEEECCCCcc----CccCHhHhCCCccCCEEECCCCcccc-------------CCCCcccccCC-ccCEEEC
Confidence 765 7888888888866 66776667888888888888876521 11111222333 4555555
Q ss_pred EEecCccccccccCcchhhccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCC
Q 010089 306 SLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNV 385 (518)
Q Consensus 306 ~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l 385 (518)
+.+....++ . .....|++|+++++......+..+..+++|+.|++++|.+....+.++..+++|+.|++++| .+
T Consensus 180 ~~n~l~~l~---~--~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l 253 (332)
T 2ft3_A 180 SEAKLTGIP---K--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KL 253 (332)
T ss_dssp CSSBCSSCC---S--SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CC
T ss_pred cCCCCCccC---c--cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cC
Confidence 433322221 1 11245777888776432222356777778888888888777766666777888888888877 44
Q ss_pred CCCc-ccccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccc--cccCCCCCCCCCcce
Q 010089 386 KDLT-WLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNL--KRIYRDPLPFPHLER 462 (518)
Q Consensus 386 ~~l~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l--~~l~~~~~~~~~L~~ 462 (518)
..+| .+..+++|+.|+++++. ++.++....... .....+++|+.|.+.+++-. ...+.....+++|+.
T Consensus 254 ~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~--------~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~ 324 (332)
T 2ft3_A 254 SRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPV--------GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324 (332)
T ss_dssp CBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCS--------SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTT
T ss_pred eecChhhhcCccCCEEECCCCC-CCccChhHcccc--------ccccccccccceEeecCcccccccCcccccccchhhh
Confidence 5555 46778888888888753 444432111000 01122567788888776432 112223445677777
Q ss_pred EeccCCC
Q 010089 463 IGISECP 469 (518)
Q Consensus 463 L~i~~C~ 469 (518)
++++++.
T Consensus 325 l~l~~n~ 331 (332)
T 2ft3_A 325 IQFGNYK 331 (332)
T ss_dssp EEC----
T ss_pred hhccccc
Confidence 7777664
No 13
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=5.7e-21 Score=185.20 Aligned_cols=285 Identities=15% Similarity=0.176 Sum_probs=190.5
Q ss_pred ecCcCCCCCCchh-hhhheeecccccccccChhhhCCCCCCcEEEeecCCCcCcc-CccccCccccCEEecCCCcCCccc
Q 010089 147 RAGVGLTDAPKIE-EWEGTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVRGLP 224 (518)
Q Consensus 147 ~~~~~~~~~~~~~-~~~~~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~lp 224 (518)
..+.....+|... ...+.+++++|++..+++..|.++++|++|++++| .+..+ |..++.+++|++|++++|.++.+|
T Consensus 38 ~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~ 116 (330)
T 1xku_A 38 CSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELP 116 (330)
T ss_dssp CTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCSBCC
T ss_pred ecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCcCCccC
Confidence 3344444554422 22234889999999998877999999999999999 45554 888999999999999999999998
Q ss_pred hhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEE
Q 010089 225 QELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIA 304 (518)
Q Consensus 225 ~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~ 304 (518)
..+. ++|++|++++|.. ..++...+.++++|++|++.+|.... .......+..+++|+.++
T Consensus 117 ~~~~--~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 117 EKMP--KTLQELRVHENEI----TKVRKSVFNGLNQMIVVELGTNPLKS-------------SGIENGAFQGMKKLSYIR 177 (330)
T ss_dssp SSCC--TTCCEEECCSSCC----CBBCHHHHTTCTTCCEEECCSSCCCG-------------GGBCTTGGGGCTTCCEEE
T ss_pred hhhc--ccccEEECCCCcc----cccCHhHhcCCccccEEECCCCcCCc-------------cCcChhhccCCCCcCEEE
Confidence 8765 7899999999876 66776668899999999998887621 112233456677777777
Q ss_pred EEEecCccccccccCcchhhccceeecccCCCCCcc-ccccccccccceEEeccCcCccccccCccccccccEEEEecCC
Q 010089 305 LSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLN-LLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCS 383 (518)
Q Consensus 305 ~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~ 383 (518)
+..+....+.. .....|++|+++++. +... +..+..+++|+.|++++|.++...+..+..+++|++|++++|
T Consensus 178 l~~n~l~~l~~-----~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N- 250 (330)
T 1xku_A 178 IADTNITTIPQ-----GLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN- 250 (330)
T ss_dssp CCSSCCCSCCS-----SCCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-
T ss_pred CCCCccccCCc-----cccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-
Confidence 66444332221 112567888888775 3333 356777888888888888777766667777888888888887
Q ss_pred CCCCCc-ccccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCcccccc---CCCCCCCCC
Q 010089 384 NVKDLT-WLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRI---YRDPLPFPH 459 (518)
Q Consensus 384 ~l~~l~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l---~~~~~~~~~ 459 (518)
.+..+| ++..+++|++|+++++. ++.++...+... .....++.|+.|++.+.+ +..+ +.....+++
T Consensus 251 ~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~--------~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~ 320 (330)
T 1xku_A 251 KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPP--------GYNTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYV 320 (330)
T ss_dssp CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCS--------SCCTTSCCCSEEECCSSS-SCGGGSCGGGGTTCCC
T ss_pred cCccCChhhccCCCcCEEECCCCc-CCccChhhcCCc--------ccccccccccceEeecCc-ccccccCccccccccc
Confidence 455555 57778888888888754 444433111100 011235677788887754 3322 223344666
Q ss_pred cceEeccCC
Q 010089 460 LERIGISEC 468 (518)
Q Consensus 460 L~~L~i~~C 468 (518)
|+.++++++
T Consensus 321 l~~l~L~~N 329 (330)
T 1xku_A 321 RAAVQLGNY 329 (330)
T ss_dssp GGGEEC---
T ss_pred eeEEEeccc
Confidence 777777654
No 14
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=2.2e-22 Score=193.41 Aligned_cols=250 Identities=20% Similarity=0.183 Sum_probs=182.7
Q ss_pred eecccccccc---cChhhhCCCCCCcEEEeec-CCCcCccCccccCccccCEEecCCCcCC-ccchhhhcCCCCcEeecc
Q 010089 165 LLLEYNHIEE---ITESFFQSLPSLRVLNLSV-NHYLTELPVGISSLVSLHHLDLSSTKVR-GLPQELKALVNLRYLNLD 239 (518)
Q Consensus 165 l~l~~~~i~~---~~~~~~~~l~~Lr~L~L~~-~~~~~~lp~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~ 239 (518)
+++.++++.. +|+. |.++++|++|++++ +...+.+|..++++++|++|++++|.++ .+|..+.++++|++|+++
T Consensus 55 L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 133 (313)
T 1ogq_A 55 LDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133 (313)
T ss_dssp EEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECC
T ss_pred EECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCC
Confidence 8888898885 5554 89999999999995 6566688999999999999999999988 589999999999999999
Q ss_pred CCcccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccC
Q 010089 240 YTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKF 319 (518)
Q Consensus 240 ~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~ 319 (518)
+|... ..+|.. +..+++|++|++.+|.... ..+ ..+..+.
T Consensus 134 ~N~l~---~~~p~~-~~~l~~L~~L~L~~N~l~~------------~~p---~~l~~l~--------------------- 173 (313)
T 1ogq_A 134 YNALS---GTLPPS-ISSLPNLVGITFDGNRISG------------AIP---DSYGSFS--------------------- 173 (313)
T ss_dssp SSEEE---SCCCGG-GGGCTTCCEEECCSSCCEE------------ECC---GGGGCCC---------------------
T ss_pred CCccC---CcCChH-HhcCCCCCeEECcCCcccC------------cCC---HHHhhhh---------------------
Confidence 99774 477776 8899999999999887621 111 1222222
Q ss_pred cchhhccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCcccccCCCccE
Q 010089 320 PKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLTWLVFVPNLKW 399 (518)
Q Consensus 320 ~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~ 399 (518)
..|+.|+++++......+..+..++ |+.|++++|.++...+..+..+++|+.|+++++.....++.+..+++|++
T Consensus 174 ----~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~ 248 (313)
T 1ogq_A 174 ----KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNG 248 (313)
T ss_dssp ----TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCE
T ss_pred ----hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCE
Confidence 1244555555432223344555555 88888888877766777778888888888888754445566677888888
Q ss_pred EEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCCCCCCCCcceEeccCCCCCcCCCC
Q 010089 400 LQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGISECPKLKKLPL 476 (518)
Q Consensus 400 L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~C~~L~~lp~ 476 (518)
|+++++.....++. .+..+++|+.|+++++.--..+|.. ..+++|+.+++.+++.+...|.
T Consensus 249 L~Ls~N~l~~~~p~---------------~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 249 LDLRNNRIYGTLPQ---------------GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp EECCSSCCEECCCG---------------GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTS
T ss_pred EECcCCcccCcCCh---------------HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCC
Confidence 88888754323332 5567888888888887433366654 6788888888888887776553
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=7.5e-22 Score=206.87 Aligned_cols=259 Identities=18% Similarity=0.185 Sum_probs=156.5
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccC-ccccCccccCEEecCCCcCCccchhh-hcCCCCcEeeccCCc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDLSSTKVRGLPQEL-KALVNLRYLNLDYTN 242 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~l~~~~ 242 (518)
+++.+|.+..+++..|..+++|++|++++| .+..+| ..++++++|++|++++|.++.+|..+ +++++|++|++++|.
T Consensus 80 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~ 158 (597)
T 3oja_B 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 158 (597)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc
Confidence 555555555555544555555555555555 233332 23455555555555555555555442 555555555555554
Q ss_pred ccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcch
Q 010089 243 EMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKL 322 (518)
Q Consensus 243 ~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l 322 (518)
. ..+++..++.+++|++|++++|.... . .+..+++|+.+++..+....+ ..
T Consensus 159 l----~~~~~~~~~~l~~L~~L~L~~N~l~~-------------~-----~~~~l~~L~~L~l~~n~l~~l-------~~ 209 (597)
T 3oja_B 159 L----ERIEDDTFQATTSLQNLQLSSNRLTH-------------V-----DLSLIPSLFHANVSYNLLSTL-------AI 209 (597)
T ss_dssp C----CBCCTTTTTTCTTCCEEECTTSCCSB-------------C-----CGGGCTTCSEEECCSSCCSEE-------EC
T ss_pred C----CCCChhhhhcCCcCcEEECcCCCCCC-------------c-----ChhhhhhhhhhhcccCccccc-------cC
Confidence 3 33333335555555555555554421 0 123344444444433221111 11
Q ss_pred hhccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCc-ccccCCCccEEE
Q 010089 323 QNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT-WLVFVPNLKWLQ 401 (518)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~ 401 (518)
...|+.|+++++. +..++... .++|+.|++++|.++. +.++..+++|+.|++++|.-....| .+..+++|+.|+
T Consensus 210 ~~~L~~L~ls~n~-l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 284 (597)
T 3oja_B 210 PIAVEELDASHNS-INVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284 (597)
T ss_dssp CTTCSEEECCSSC-CCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred CchhheeeccCCc-cccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEE
Confidence 2346777877764 33333222 3578999999887774 4668888999999999884333333 577889999999
Q ss_pred EecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCCCCCCCCcceEeccCCCCCcCCCC
Q 010089 402 IFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGISECPKLKKLPL 476 (518)
Q Consensus 402 L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~C~~L~~lp~ 476 (518)
|++|. +..++ .....+|+|+.|+++++ .+..+|.....+++|+.|++++| ++..+|.
T Consensus 285 Ls~N~-l~~l~---------------~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~~ 341 (597)
T 3oja_B 285 ISNNR-LVALN---------------LYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLKL 341 (597)
T ss_dssp CTTSC-CCEEE---------------CSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCCC
T ss_pred CCCCC-CCCCC---------------cccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCC-CCCCcCh
Confidence 98864 44333 25567899999999997 67788877778999999999998 5777763
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=9.1e-22 Score=207.46 Aligned_cols=297 Identities=13% Similarity=0.129 Sum_probs=194.9
Q ss_pred eecccccccc------------------cChhhhC--CCCCCcEEEeecCCCcCccCccccCccccCEEecCCCc-CCc-
Q 010089 165 LLLEYNHIEE------------------ITESFFQ--SLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTK-VRG- 222 (518)
Q Consensus 165 l~l~~~~i~~------------------~~~~~~~--~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~-l~~- 222 (518)
+++++|.+.. +|.. +. ++++|++|++++|...+.+|..++++++|++|++++|. ++.
T Consensus 211 L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~ 289 (636)
T 4eco_A 211 FYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289 (636)
T ss_dssp EEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHH
T ss_pred EECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccc
Confidence 8999999998 7776 77 99999999999997788999999999999999999997 885
Q ss_pred -cchhhhcC------CCCcEeeccCCcccccccCCch--hhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHH
Q 010089 223 -LPQELKAL------VNLRYLNLDYTNEMCKMCKIPE--QLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKE 293 (518)
Q Consensus 223 -lp~~i~~L------~~L~~L~l~~~~~l~~~~~lp~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (518)
+|..++++ ++|++|++++|.. ..+|. . ++++++|++|++.+|.... ..+ .
T Consensus 290 ~lp~~~~~L~~~~~l~~L~~L~L~~n~l----~~ip~~~~-l~~l~~L~~L~L~~N~l~g------------~ip----~ 348 (636)
T 4eco_A 290 QLKDDWQALADAPVGEKIQIIYIGYNNL----KTFPVETS-LQKMKKLGMLECLYNQLEG------------KLP----A 348 (636)
T ss_dssp HHHHHHHHHHHSGGGGTCCEEECCSSCC----SSCCCHHH-HTTCTTCCEEECCSCCCEE------------ECC----C
T ss_pred cchHHHHhhhccccCCCCCEEECCCCcC----CccCchhh-hccCCCCCEEeCcCCcCcc------------chh----h
Confidence 99999887 9999999999976 78887 5 8999999999999987631 111 4
Q ss_pred hhcccccceEEEEEecCccccccccCcchhhc-cceeecccCCCCCccccccccc--cccceEEeccCcCccccccCcc-
Q 010089 294 IHCLEQLNLIALSLRGSRGVENFLKFPKLQNI-TQALHIKDCNSLPLNLLHLANM--EHLQLFSIWDSNLEDWNVDCAG- 369 (518)
Q Consensus 294 l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~-L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~l~~~~~~~~~- 369 (518)
+..+++|+.++++.+... .++....-... |+.|+++++. +..++..+... ++|+.|++++|.+....|.++.
T Consensus 349 ~~~l~~L~~L~L~~N~l~---~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 424 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT---EIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424 (636)
T ss_dssp CEEEEEESEEECCSSEEE---ECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred hCCCCCCCEEECCCCccc---cccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcc
Confidence 556666666665543322 22221122233 7777777765 34555444443 3677777777766655555555
Q ss_pred ------ccccccEEEEecCCCCCCCcc--cccCCCccEEEEecCcchhhhhcccchh---------cccc-------ccc
Q 010089 370 ------EVQKMLKLHFVNCSNVKDLTW--LVFVPNLKWLQIFNCDDMEEIISVEKFE---------KLGE-------VSE 425 (518)
Q Consensus 370 ------~l~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~~~~~~~~~---------~~~~-------l~~ 425 (518)
.+++|++|++++| .+..+|. ...+++|++|+++++. +..++...... .+.. +..
T Consensus 425 ~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 502 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502 (636)
T ss_dssp TCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB
T ss_pred cccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCCcCCc
Confidence 5667777777776 3445542 3346777777777654 33433211100 1110 012
Q ss_pred cCCCCc--cCCCcceeeccCCccccccCCCCCCCCCcceEeccC------CCCCcCCCCCCCCCCCcceEEEch
Q 010089 426 MMGEPI--LFSELELLVISNASNLKRIYRDPLPFPHLERIGISE------CPKLKKLPLNSSSAKGRKIVIYGE 491 (518)
Q Consensus 426 ~~~~~~--~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~------C~~L~~lp~~~~~~~~~l~~~~~~ 491 (518)
++.... .+++|+.|+++++ .+..+|.....+++|+.|++++ +.-...+|..+..+ .+|+..+..
T Consensus 503 lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l-~~L~~L~Ls 574 (636)
T 4eco_A 503 LSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC-PSLTQLQIG 574 (636)
T ss_dssp CCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGC-SSCCEEECC
T ss_pred cChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcC-CCCCEEECC
Confidence 222333 6677777777764 5555666666677777777743 33344566655554 344444443
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=1e-20 Score=199.15 Aligned_cols=140 Identities=14% Similarity=0.068 Sum_probs=82.6
Q ss_pred cccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCcccccCCCccEEEEecCcchhhhhcccchhccccc
Q 010089 344 LANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLTWLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEV 423 (518)
Q Consensus 344 l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l 423 (518)
+..+++|+.|+++++.+..+ + ++..+++|++|++++|.. ..+|.+ .+++|+.|+++++..+..+. ......+..+
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l-~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L 355 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYL-E-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFK-KVALPSLSYL 355 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCC-C-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECC-CCCCTTCCEE
T ss_pred cccCCCCCEEEecCccchhh-h-hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchh-hccCCCCCEE
Confidence 55667777777777766543 2 566677777777777744 666655 67777777777764333221 1111111110
Q ss_pred -------ccc---CCCCccCCCcceeeccCCccccccCCCCCCCCCcceEeccCCCCCcCCCC--CCCCCCCcceEEEch
Q 010089 424 -------SEM---MGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGISECPKLKKLPL--NSSSAKGRKIVIYGE 491 (518)
Q Consensus 424 -------~~~---~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~C~~L~~lp~--~~~~~~~~l~~~~~~ 491 (518)
.+. +.....+++|++|+++++ .+..++.....+++|+.|++++| ++..++. .+..+ .+++.++..
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l-~~L~~L~l~ 432 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHS-TLKRVTEFSAFLSL-EKLLYLDIS 432 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEECCCCTTCTTCCEEECTTS-EEESTTTTTTTTTC-TTCCEEECT
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCCC-ccccchhhccCCCCCCeeECCCC-ccCCccChhhhhcc-ccCCEEECc
Confidence 011 223456788888888876 46777767778888888888887 4444432 33333 355555444
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=2.7e-21 Score=202.59 Aligned_cols=250 Identities=19% Similarity=0.202 Sum_probs=198.3
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCcc-ccCccccCEEecCCCcCCccch-hhhcCCCCcEeeccCCc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSSTKVRGLPQ-ELKALVNLRYLNLDYTN 242 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 242 (518)
+++.+|.+..+++..|+++++|++|++++| .+..+|.. ++.+++|++|++++|.++.+|. .++++++|++|++++|.
T Consensus 104 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 104 LYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence 899999999999998999999999999999 77788876 5899999999999999998654 68999999999999997
Q ss_pred ccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcch
Q 010089 243 EMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKL 322 (518)
Q Consensus 243 ~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l 322 (518)
. ..++ ++.+++|++|++.+|.... +....+|+.++++.+....+.. ..
T Consensus 183 l----~~~~---~~~l~~L~~L~l~~n~l~~--------------------l~~~~~L~~L~ls~n~l~~~~~-----~~ 230 (597)
T 3oja_B 183 L----THVD---LSLIPSLFHANVSYNLLST--------------------LAIPIAVEELDASHNSINVVRG-----PV 230 (597)
T ss_dssp C----SBCC---GGGCTTCSEEECCSSCCSE--------------------EECCTTCSEEECCSSCCCEEEC-----SC
T ss_pred C----CCcC---hhhhhhhhhhhcccCcccc--------------------ccCCchhheeeccCCccccccc-----cc
Confidence 6 5554 4678999999999886632 2233456666665443322211 11
Q ss_pred hhccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCc-ccccCCCccEEE
Q 010089 323 QNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT-WLVFVPNLKWLQ 401 (518)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~ 401 (518)
...|+.|+++++.. ... ..+..+++|+.|++++|.+....|..+..+++|+.|++++| .+..+| ....+|+|+.|+
T Consensus 231 ~~~L~~L~L~~n~l-~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~ 307 (597)
T 3oja_B 231 NVELTILKLQHNNL-TDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLD 307 (597)
T ss_dssp CSCCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEE
T ss_pred CCCCCEEECCCCCC-CCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEE
Confidence 24689999999853 332 67888999999999999998878888999999999999998 556555 455699999999
Q ss_pred EecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCCCCCCCCcceEeccCCC
Q 010089 402 IFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGISECP 469 (518)
Q Consensus 402 L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~C~ 469 (518)
|++|. +..++. .+..+++|+.|+++++ .+..++ ...+++|+.|+++++|
T Consensus 308 Ls~N~-l~~i~~---------------~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 308 LSHNH-LLHVER---------------NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCSSC-CCCCGG---------------GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred CCCCC-CCccCc---------------ccccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCC
Confidence 99975 444443 4567899999999997 566664 6678999999999875
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=2.4e-21 Score=204.01 Aligned_cols=277 Identities=15% Similarity=0.148 Sum_probs=213.0
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCcc-chhhhcCCCCcEeeccCCcc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGL-PQELKALVNLRYLNLDYTNE 243 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~ 243 (518)
+++.+|.+..+++..|..+++|++|++++| .+..+|..++.+++|++|++++|.++.+ |..+.++++|++|++++|..
T Consensus 259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 259 INLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp EECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred EEeecCccCccCHHHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence 888999999999988999999999999999 7889999999999999999999999986 66899999999999999976
Q ss_pred cccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchh
Q 010089 244 MCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQ 323 (518)
Q Consensus 244 l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~ 323 (518)
. ..+|.+.+..+++|++|++.+|.... .......+..+++|+.++++.+..... ........
T Consensus 338 ~---~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l 399 (606)
T 3t6q_A 338 R---LELGTGCLENLENLRELDLSHDDIET-------------SDCCNLQLRNLSHLQSLNLSYNEPLSL--KTEAFKEC 399 (606)
T ss_dssp C---CBCCSSTTTTCTTCCEEECCSSCCCE-------------EEESTTTTTTCTTCCEEECCSCSCEEE--CTTTTTTC
T ss_pred c---cccchhhhhccCcCCEEECCCCcccc-------------ccCcchhcccCCCCCEEECCCCcCCcC--CHHHhcCC
Confidence 4 57777668999999999999987632 111123456677778777765432211 11112223
Q ss_pred hccceeecccCCCCCccc-cccccccccceEEeccCcCccccccCccccccccEEEEecCCCCC----CCcccccCCCcc
Q 010089 324 NITQALHIKDCNSLPLNL-LHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVK----DLTWLVFVPNLK 398 (518)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~----~l~~l~~l~~L~ 398 (518)
..|+.|+++++......+ ..+..+++|+.|++++|.+....+..+..+++|++|++++|.-.. ....+..+++|+
T Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~ 479 (606)
T 3t6q_A 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479 (606)
T ss_dssp TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC
T ss_pred ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCcc
Confidence 568999999876433322 347889999999999998887778888999999999999985322 113577899999
Q ss_pred EEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCCCCCCCCcceEeccCCCCCcCCCCC
Q 010089 399 WLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGISECPKLKKLPLN 477 (518)
Q Consensus 399 ~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~ 477 (518)
.|++++|.. ..++. ..+..+++|+.|+++++.--...+.....+++| .|++++| +++.+|..
T Consensus 480 ~L~Ls~n~l-~~~~~--------------~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~ 541 (606)
T 3t6q_A 480 ILVLSFCDL-SSIDQ--------------HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPS 541 (606)
T ss_dssp EEECTTSCC-CEECT--------------TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGG
T ss_pred EEECCCCcc-CccCh--------------hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHh
Confidence 999999753 33321 256789999999999974434445567788999 9999998 66666543
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=5.7e-21 Score=195.03 Aligned_cols=266 Identities=20% Similarity=0.193 Sum_probs=206.1
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCcc-ccCccccCEEecCCCcCCcc-chhhhcCCCCcEeeccCCc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSSTKVRGL-PQELKALVNLRYLNLDYTN 242 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~ 242 (518)
+++.+|.+..+++..|.++++|++|++++| .+..+|.. +.++++|++|++++|.+..+ |..+.++++|++|++++|.
T Consensus 61 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~ 139 (477)
T 2id5_A 61 LELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND 139 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT
T ss_pred EECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc
Confidence 899999999998777999999999999999 67777754 78999999999999999885 6678999999999999997
Q ss_pred ccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcch
Q 010089 243 EMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKL 322 (518)
Q Consensus 243 ~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l 322 (518)
. ..++...+..+++|++|++.+|..... ....+..+++|+.+++..+....... .....
T Consensus 140 l----~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~~~l~~l~~L~~L~l~~n~i~~~~~--~~~~~ 198 (477)
T 2id5_A 140 L----VYISHRAFSGLNSLEQLTLEKCNLTSI---------------PTEALSHLHGLIVLRLRHLNINAIRD--YSFKR 198 (477)
T ss_dssp C----CEECTTSSTTCTTCCEEEEESCCCSSC---------------CHHHHTTCTTCCEEEEESCCCCEECT--TCSCS
T ss_pred c----ceeChhhccCCCCCCEEECCCCcCccc---------------ChhHhcccCCCcEEeCCCCcCcEeCh--hhccc
Confidence 6 455544589999999999999876321 12335667778888777554332211 11122
Q ss_pred hhccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCc--ccccCCCccEE
Q 010089 323 QNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT--WLVFVPNLKWL 400 (518)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L 400 (518)
...|+.|+++++.....++.......+|+.|++++|.++.+.+..+..+++|+.|+++++. +..++ .+..+++|+.|
T Consensus 199 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 277 (477)
T 2id5_A 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEI 277 (477)
T ss_dssp CTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEE
T ss_pred CcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEE
Confidence 3568999999988777776555556699999999998887665677889999999999984 55544 46789999999
Q ss_pred EEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCC-CCCCCCcceEeccCCC
Q 010089 401 QIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRD-PLPFPHLERIGISECP 469 (518)
Q Consensus 401 ~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~i~~C~ 469 (518)
+|+++. +..+.. ..+..+++|+.|+++++ .++.++.. ...+++|+.|+++++|
T Consensus 278 ~L~~n~-l~~~~~--------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 278 QLVGGQ-LAVVEP--------------YAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp ECCSSC-CSEECT--------------TTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred ECCCCc-cceECH--------------HHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 999864 333321 25667899999999996 77777654 4678999999998764
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=1.7e-20 Score=204.44 Aligned_cols=299 Identities=16% Similarity=0.147 Sum_probs=204.7
Q ss_pred eeEEecCcCCCCCCchhhhhheeecccccccccChhhhCCCCCCcEEEeecCCCcCcc-CccccCccccCEEecCCCcCC
Q 010089 143 KFLVRAGVGLTDAPKIEEWEGTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVR 221 (518)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~ 221 (518)
..+......+..+|......+.+++++|.+..+++..|.++++|++|++++|.....+ |..++++++|++|++++|.+.
T Consensus 7 ~~~dcs~~~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp EEEEESCCCSSCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred eEEEccCCCCCCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence 3444556667777774444445999999999988777999999999999999666666 778999999999999999998
Q ss_pred cc-chhhhcCCCCcEeeccCCcccccccCCch-hhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccc
Q 010089 222 GL-PQELKALVNLRYLNLDYTNEMCKMCKIPE-QLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQ 299 (518)
Q Consensus 222 ~l-p~~i~~L~~L~~L~l~~~~~l~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 299 (518)
.+ |..++++++|++|++++|... ..+|. ..+.++++|++|++++|....... ...++++++
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~--------------~~~~~~L~~ 149 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLS---DAVLKDGYFRNLKALTRLDLSKNQIRSLYL--------------HPSFGKLNS 149 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCS---SCCSTTCCCSSCSSCCEEEEESCCCCCCCC--------------CGGGGTCSS
T ss_pred ccCHhHccCCcccCEeeCcCCCCC---cccccCccccccCCCCEEECCCCccccccc--------------chhHhhCCC
Confidence 85 788999999999999999763 33443 347889999999999987743211 122344555
Q ss_pred cceEEEEEecCccc--cccc--------------------------cCcc--hhhccceeecccCCCCCcccc-------
Q 010089 300 LNLIALSLRGSRGV--ENFL--------------------------KFPK--LQNITQALHIKDCNSLPLNLL------- 342 (518)
Q Consensus 300 L~~l~~~~~~~~~~--~~l~--------------------------~~~~--l~~~L~~L~l~~~~~~~~~~~------- 342 (518)
|+.++++.+..... ..+. .... ....|+.|+++++......+.
T Consensus 150 L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~ 229 (844)
T 3j0a_A 150 LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS 229 (844)
T ss_dssp CCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSC
T ss_pred CCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcC
Confidence 55555543322110 0000 0000 001267788777631111110
Q ss_pred -----------------------------cccc--ccccceEEeccCcCccccccCccccccccEEEEecCCCCCCC-c-
Q 010089 343 -----------------------------HLAN--MEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDL-T- 389 (518)
Q Consensus 343 -----------------------------~l~~--l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~- 389 (518)
.+.. .++|+.|++++|.+....+..+..+++|+.|+++++. +..+ +
T Consensus 230 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~ 308 (844)
T 3j0a_A 230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADE 308 (844)
T ss_dssp SCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCEECTT
T ss_pred cccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCCCChH
Confidence 0111 2578888888887777677778888899999998874 4433 3
Q ss_pred ccccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCC-CCCCCCCcceEeccCC
Q 010089 390 WLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYR-DPLPFPHLERIGISEC 468 (518)
Q Consensus 390 ~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~i~~C 468 (518)
.+..+++|++|+++++. +..+. +..+..+++|+.|+++++ .+..++. ....+++|+.|++++|
T Consensus 309 ~~~~l~~L~~L~Ls~N~-l~~~~--------------~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 309 AFYGLDNLQVLNLSYNL-LGELY--------------SSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp TTTTCSSCCEEEEESCC-CSCCC--------------SCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETC
T ss_pred HhcCCCCCCEEECCCCC-CCccC--------------HHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCC
Confidence 56778899999998864 33322 125678899999999986 6666654 3567899999999987
Q ss_pred CCCcCCCC
Q 010089 469 PKLKKLPL 476 (518)
Q Consensus 469 ~~L~~lp~ 476 (518)
+++.+|.
T Consensus 373 -~l~~i~~ 379 (844)
T 3j0a_A 373 -ALTTIHF 379 (844)
T ss_dssp -CSCCCSS
T ss_pred -CCCcccC
Confidence 6777665
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=6.3e-21 Score=193.53 Aligned_cols=291 Identities=16% Similarity=0.179 Sum_probs=197.3
Q ss_pred eeccccccc-ccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCc-cchh--hhcCCCCcEeeccC
Q 010089 165 LLLEYNHIE-EITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRG-LPQE--LKALVNLRYLNLDY 240 (518)
Q Consensus 165 l~l~~~~i~-~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~ 240 (518)
+++.+|.+. .+++..|.++++|++|++++|......|..++++++|++|++++|.+++ +|.. +.++++|++|++++
T Consensus 59 L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 138 (455)
T 3v47_A 59 LKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138 (455)
T ss_dssp EECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCS
T ss_pred EECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCC
Confidence 788888776 5666678889999999999984444457788889999999999998876 4554 88889999999998
Q ss_pred CcccccccCCchhhhcCCCCCcEEeccccCCCCccccccC--------------CCCcch-----hhhhHHHhhcccccc
Q 010089 241 TNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEG--------------NVLSDD-----AESLMKEIHCLEQLN 301 (518)
Q Consensus 241 ~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--------------~~~~~~-----~~~~~~~l~~L~~L~ 301 (518)
|... ...|...+.++++|++|++.+|........... +..... .......+..+++|+
T Consensus 139 n~l~---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~ 215 (455)
T 3v47_A 139 NNIK---KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSIT 215 (455)
T ss_dssp SBCC---SCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEE
T ss_pred CccC---ccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceee
Confidence 8763 333555578889999999888866433211100 000000 000001112233444
Q ss_pred eEEEEEecCcc--------------c-----------------cccc-----cCcc-hhhccceeecccCCCCCcccccc
Q 010089 302 LIALSLRGSRG--------------V-----------------ENFL-----KFPK-LQNITQALHIKDCNSLPLNLLHL 344 (518)
Q Consensus 302 ~l~~~~~~~~~--------------~-----------------~~l~-----~~~~-l~~~L~~L~l~~~~~~~~~~~~l 344 (518)
.++++.+.... + ..+. .... ....++.|+++++......+..+
T Consensus 216 ~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 295 (455)
T 3v47_A 216 TLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF 295 (455)
T ss_dssp EEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT
T ss_pred eEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhc
Confidence 44443221100 0 0000 0000 01458889998876544445678
Q ss_pred ccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCC-c-ccccCCCccEEEEecCcchhhhhcccchhcccc
Q 010089 345 ANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDL-T-WLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGE 422 (518)
Q Consensus 345 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~ 422 (518)
..+++|+.|++++|.+....+..+..+++|++|++++| .+..+ + .+..+++|++|++++|. +..+..
T Consensus 296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--------- 364 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNH-IRALGD--------- 364 (455)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSC-CCEECT---------
T ss_pred ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCc-ccccCh---------
Confidence 88999999999999998878888999999999999998 44544 3 57789999999999975 333321
Q ss_pred ccccCCCCccCCCcceeeccCCccccccCCC-CCCCCCcceEeccCCCCCcCCC
Q 010089 423 VSEMMGEPILFSELELLVISNASNLKRIYRD-PLPFPHLERIGISECPKLKKLP 475 (518)
Q Consensus 423 l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~i~~C~~L~~lp 475 (518)
..+..+++|++|+++++ .++.++.. ...+++|+.|++++++---..|
T Consensus 365 -----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 365 -----QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp -----TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred -----hhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 26678999999999996 78887765 4689999999999875433333
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=1.1e-20 Score=197.40 Aligned_cols=104 Identities=28% Similarity=0.302 Sum_probs=70.2
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCcc-CccccCccccCEEecCCCcCCccch-hhhcCCCCcEeeccCCc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVRGLPQ-ELKALVNLRYLNLDYTN 242 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 242 (518)
+++++|++..+++..|.++++|++|++++| .+..+ |..++++.+|++|++++|.++.+|. .++++++|++|++++|.
T Consensus 57 L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~ 135 (570)
T 2z63_A 57 LDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135 (570)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCc
Confidence 566666666666666666777777777776 34444 3566777777777777777777655 47777778888887776
Q ss_pred cccccc-CCchhhhcCCCCCcEEeccccCCCC
Q 010089 243 EMCKMC-KIPEQLISSFSKLQVLRMLHCGSNH 273 (518)
Q Consensus 243 ~l~~~~-~lp~~~~~~l~~L~~L~l~~~~~~~ 273 (518)
.. . .+|.. ++++++|++|++.+|....
T Consensus 136 l~---~~~lp~~-~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 136 IQ---SFKLPEY-FSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp CC---CCCCCGG-GGGCTTCCEEECTTSCCCE
T ss_pred cc---eecChhh-hcccCCCCEEeCcCCccce
Confidence 52 2 35665 7788888888888776543
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=1.6e-21 Score=205.58 Aligned_cols=270 Identities=12% Similarity=0.042 Sum_probs=168.5
Q ss_pred ccCccccCccccCEEecCCCcCCc------------------cchhhh--cCCCCcEeeccCCcccccccCCchhhhcCC
Q 010089 199 ELPVGISSLVSLHHLDLSSTKVRG------------------LPQELK--ALVNLRYLNLDYTNEMCKMCKIPEQLISSF 258 (518)
Q Consensus 199 ~lp~~i~~L~~L~~L~l~~~~l~~------------------lp~~i~--~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l 258 (518)
.+|..++++++|++|++++|.++. +|+.++ ++++|++|++++|... ..+|.. ++++
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~---~~~p~~-l~~l 272 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL---TKLPTF-LKAL 272 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC---SSCCTT-TTTC
T ss_pred cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC---ccChHH-HhcC
Confidence 378889999999999999999988 899988 9999999999999776 778876 8899
Q ss_pred CCCcEEeccccC-CCCccccccCCCCcc-hhhhhHHHh---hcccccceEEEEEecCccccccccCcchhhccceeeccc
Q 010089 259 SKLQVLRMLHCG-SNHWPIAEEGNVLSD-DAESLMKEI---HCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKD 333 (518)
Q Consensus 259 ~~L~~L~l~~~~-~~~~~~~~~~~~~~~-~~~~~~~~l---~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~ 333 (518)
++|++|++.+|. .. + ..+..++.+ ..+++|+.+++..+....++... .......|+.|++++
T Consensus 273 ~~L~~L~Ls~n~~l~------------~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~-~l~~l~~L~~L~L~~ 339 (636)
T 4eco_A 273 PEMQLINVACNRGIS------------GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET-SLQKMKKLGMLECLY 339 (636)
T ss_dssp SSCCEEECTTCTTSC------------HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH-HHTTCTTCCEEECCS
T ss_pred CCCCEEECcCCCCCc------------cccchHHHHhhhccccCCCCCEEECCCCcCCccCchh-hhccCCCCCEEeCcC
Confidence 999999999886 42 1 233333333 33477777777655433222100 112224578888887
Q ss_pred CCCCCccccccccccccceEEeccCcCccccccCcccccc-ccEEEEecCCCCCCCc-cccc--CCCccEEEEecCcchh
Q 010089 334 CNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQK-MLKLHFVNCSNVKDLT-WLVF--VPNLKWLQIFNCDDME 409 (518)
Q Consensus 334 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~-L~~L~l~~c~~l~~l~-~l~~--l~~L~~L~L~~c~~l~ 409 (518)
+.....++ .+..+++|+.|++++|.++. .|.++..+++ |++|+++++. +..+| .+.. +++|+.|+++++....
T Consensus 340 N~l~g~ip-~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 340 NQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp CCCEEECC-CCEEEEEESEEECCSSEEEE-CCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred CcCccchh-hhCCCCCCCEEECCCCcccc-ccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCC
Confidence 75332555 67777888888888886664 5666777777 8888888774 44555 3333 3477888887765332
Q ss_pred hhhcc-c-------chhccccc-------cccCCC-CccCCCcceeeccCCccccccCCCCCC--------CCCcceEec
Q 010089 410 EIISV-E-------KFEKLGEV-------SEMMGE-PILFSELELLVISNASNLKRIYRDPLP--------FPHLERIGI 465 (518)
Q Consensus 410 ~~~~~-~-------~~~~~~~l-------~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~--------~~~L~~L~i 465 (518)
.++.. . ....+..+ .+++.. ...+++|+.|+++++ .+..+|..... +++|+.|++
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~L 495 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDL 495 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEEC
T ss_pred cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEEC
Confidence 22210 0 00011100 111111 123567777777775 55566554322 127777888
Q ss_pred cCCCCCcCCCCCCC--CCCCcceEEEch
Q 010089 466 SECPKLKKLPLNSS--SAKGRKIVIYGE 491 (518)
Q Consensus 466 ~~C~~L~~lp~~~~--~~~~~l~~~~~~ 491 (518)
++| +++.+|.... .+ .+|+.++..
T Consensus 496 s~N-~l~~lp~~~~~~~l-~~L~~L~Ls 521 (636)
T 4eco_A 496 RFN-KLTKLSDDFRATTL-PYLVGIDLS 521 (636)
T ss_dssp CSS-CCCBCCGGGSTTTC-TTCCEEECC
T ss_pred cCC-cCCccChhhhhccC-CCcCEEECC
Confidence 776 6667776554 33 345554444
No 25
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=2.4e-21 Score=208.90 Aligned_cols=82 Identities=17% Similarity=0.064 Sum_probs=46.1
Q ss_pred ccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCc-ccccCCCccEEEEe
Q 010089 325 ITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT-WLVFVPNLKWLQIF 403 (518)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~L~ 403 (518)
.|+.|++++|......+..+..+++|+.|++++|.+....|..+..+++|+.|++++|.....+| .+..+++|+.|+++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 35556665554333344555566666666666665554455556666666666666664333333 35556666666666
Q ss_pred cCc
Q 010089 404 NCD 406 (518)
Q Consensus 404 ~c~ 406 (518)
+|.
T Consensus 475 ~N~ 477 (768)
T 3rgz_A 475 FND 477 (768)
T ss_dssp SSC
T ss_pred CCc
Confidence 654
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=3.4e-20 Score=188.47 Aligned_cols=257 Identities=18% Similarity=0.246 Sum_probs=129.9
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCccc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEM 244 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l 244 (518)
+++++|.+..+++ +.++++|++|++++| .+..++. ++++++|++|++++|.++.+|. +.++++|++|++++|..
T Consensus 73 L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l- 146 (466)
T 1o6v_A 73 INFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTI- 146 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEE-
T ss_pred EECCCCccCCchh--hhccccCCEEECCCC-ccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCcc-
Confidence 6666666666655 666677777777666 4555554 6666777777777666666654 66666777777766654
Q ss_pred ccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccC-----
Q 010089 245 CKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKF----- 319 (518)
Q Consensus 245 ~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~----- 319 (518)
..++. +..+++|++|++.++.. . +..+..+++|+.++++.+.......+...
T Consensus 147 ---~~~~~--~~~l~~L~~L~l~~~~~-~-----------------~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~ 203 (466)
T 1o6v_A 147 ---SDISA--LSGLTSLQQLSFGNQVT-D-----------------LKPLANLTTLERLDISSNKVSDISVLAKLTNLES 203 (466)
T ss_dssp ---CCCGG--GTTCTTCSEEEEEESCC-C-----------------CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred ---CCChh--hccCCcccEeecCCccc-C-----------------chhhccCCCCCEEECcCCcCCCChhhccCCCCCE
Confidence 44443 55555555555542211 0 01133334444444332222111111110
Q ss_pred -------------cchhhccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCC
Q 010089 320 -------------PKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVK 386 (518)
Q Consensus 320 -------------~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~ 386 (518)
......|+.|+++++. +..+ ..+..+++|+.|++++|.+....+ +..+++|+.|++++| .+.
T Consensus 204 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~ 278 (466)
T 1o6v_A 204 LIATNNQISDITPLGILTNLDELSLNGNQ-LKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN-QIS 278 (466)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS-CCC
T ss_pred EEecCCcccccccccccCCCCEEECCCCC-cccc-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCC-ccC
Confidence 0111223444444332 1111 233344444444444444333221 334444444444444 233
Q ss_pred CCcccccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCCCCCCCCcceEecc
Q 010089 387 DLTWLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGIS 466 (518)
Q Consensus 387 ~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~ 466 (518)
.++.+..+++|+.|++++|. +..++ ....+++|+.|++++| .+..++. ...+++|+.|+++
T Consensus 279 ~~~~~~~l~~L~~L~L~~n~-l~~~~----------------~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 279 NISPLAGLTALTNLELNENQ-LEDIS----------------PISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFY 339 (466)
T ss_dssp CCGGGTTCTTCSEEECCSSC-CSCCG----------------GGGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECC
T ss_pred ccccccCCCccCeEEcCCCc-ccCch----------------hhcCCCCCCEEECcCC-cCCCchh-hccCccCCEeECC
Confidence 33334444555555554432 11111 2456788888888886 4554433 5577888888888
Q ss_pred CCCCCcCCC
Q 010089 467 ECPKLKKLP 475 (518)
Q Consensus 467 ~C~~L~~lp 475 (518)
+| +++.+|
T Consensus 340 ~n-~l~~~~ 347 (466)
T 1o6v_A 340 NN-KVSDVS 347 (466)
T ss_dssp SS-CCCCCG
T ss_pred CC-ccCCch
Confidence 87 666664
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=6e-21 Score=205.06 Aligned_cols=297 Identities=12% Similarity=0.155 Sum_probs=182.4
Q ss_pred eecccccccc------------------cChhhhC--CCCCCcEEEeecCCCcCccCccccCccccCEEecCCCc-CCc-
Q 010089 165 LLLEYNHIEE------------------ITESFFQ--SLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTK-VRG- 222 (518)
Q Consensus 165 l~l~~~~i~~------------------~~~~~~~--~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~-l~~- 222 (518)
+++++|++.. +|+. ++ ++++|++|++++|...+.+|..++++++|++|++++|+ ++.
T Consensus 453 L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~ 531 (876)
T 4ecn_A 453 IYFANSPFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531 (876)
T ss_dssp EEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHH
T ss_pred EECcCCcCCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccc
Confidence 8889999888 7776 55 89999999999997788899999999999999999997 885
Q ss_pred -cchhhhcCC-------CCcEeeccCCcccccccCCch--hhhcCCCCCcEEeccccCCCCccccc----------cCCC
Q 010089 223 -LPQELKALV-------NLRYLNLDYTNEMCKMCKIPE--QLISSFSKLQVLRMLHCGSNHWPIAE----------EGNV 282 (518)
Q Consensus 223 -lp~~i~~L~-------~L~~L~l~~~~~l~~~~~lp~--~~~~~l~~L~~L~l~~~~~~~~~~~~----------~~~~ 282 (518)
+|..+++++ +|++|++++|.. ..+|. . ++++++|++|++++|.....|... ..+.
T Consensus 532 ~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L----~~ip~~~~-l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 532 QLKADWTRLADDEDTGPKIQIFYMGYNNL----EEFPASAS-LQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp HHHHHHHHHHHCTTTTTTCCEEECCSSCC----CBCCCHHH-HTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSC
T ss_pred cchHHHHhhhhcccccCCccEEEeeCCcC----CccCChhh-hhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCc
Confidence 888887776 999999999876 67887 5 889999999999988775443100 1111
Q ss_pred CcchhhhhHHHhhcccc-cceEEEEEecCccccccccCcchhh--ccceeecccCCC-----------------------
Q 010089 283 LSDDAESLMKEIHCLEQ-LNLIALSLRGSRGVENFLKFPKLQN--ITQALHIKDCNS----------------------- 336 (518)
Q Consensus 283 ~~~~~~~~~~~l~~L~~-L~~l~~~~~~~~~~~~l~~~~~l~~--~L~~L~l~~~~~----------------------- 336 (518)
.. .....+..+++ |+.++++.+....++ ....... .|+.|+++++..
T Consensus 607 l~----~lp~~l~~l~~~L~~L~Ls~N~L~~lp---~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 607 IE----EIPEDFCAFTDQVEGLGFSHNKLKYIP---NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679 (876)
T ss_dssp CS----CCCTTSCEECTTCCEEECCSSCCCSCC---SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred cc----cchHHHhhccccCCEEECcCCCCCcCc---hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence 11 12223555555 666666544332221 1111111 144555544432
Q ss_pred -----CCccccc-cccccccceEEeccCcCccccccCcc-------ccccccEEEEecCCCCCCCc-ccc--cCCCccEE
Q 010089 337 -----LPLNLLH-LANMEHLQLFSIWDSNLEDWNVDCAG-------EVQKMLKLHFVNCSNVKDLT-WLV--FVPNLKWL 400 (518)
Q Consensus 337 -----~~~~~~~-l~~l~~L~~L~l~~~~l~~~~~~~~~-------~l~~L~~L~l~~c~~l~~l~-~l~--~l~~L~~L 400 (518)
+..++.. +..+++|+.|++++|.+..++...+. ++++|+.|+|++| .+..+| .+. .+++|+.|
T Consensus 680 Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L 758 (876)
T 4ecn_A 680 LSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNM 758 (876)
T ss_dssp CCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEE
T ss_pred ccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEE
Confidence 1222211 12344555555555544432222111 1225555555555 333443 232 45555555
Q ss_pred EEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccC------CccccccCCCCCCCCCcceEeccCCCCCcCC
Q 010089 401 QIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISN------ASNLKRIYRDPLPFPHLERIGISECPKLKKL 474 (518)
Q Consensus 401 ~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~------~~~l~~l~~~~~~~~~L~~L~i~~C~~L~~l 474 (518)
+|++|. +. +++..+..+++|+.|+|++ +.-...+|..+..+++|+.|++++| ++..+
T Consensus 759 ~Ls~N~-L~---------------~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~I 821 (876)
T 4ecn_A 759 DVSYNC-FS---------------SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKV 821 (876)
T ss_dssp ECCSSC-CS---------------SCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBC
T ss_pred EeCCCC-CC---------------ccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCcc
Confidence 555543 22 2333566788999999876 3334566777778899999999998 55888
Q ss_pred CCCCCCCCCcceEEEchhhhh
Q 010089 475 PLNSSSAKGRKIVIYGEKEWW 495 (518)
Q Consensus 475 p~~~~~~~~~l~~~~~~~~~~ 495 (518)
|..+.+ +|+.++...+-+
T Consensus 822 p~~l~~---~L~~LdLs~N~l 839 (876)
T 4ecn_A 822 DEKLTP---QLYILDIADNPN 839 (876)
T ss_dssp CSCCCS---SSCEEECCSCTT
T ss_pred CHhhcC---CCCEEECCCCCC
Confidence 887543 455555443333
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=3.6e-20 Score=188.33 Aligned_cols=282 Identities=17% Similarity=0.206 Sum_probs=198.0
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCccc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEM 244 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l 244 (518)
+++.++.+..++. +..+++|++|++++| .+..+|. ++.+++|++|++++|.+..+|. +.++++|++|++++|..
T Consensus 51 L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l- 124 (466)
T 1o6v_A 51 LQADRLGIKSIDG--VEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQI- 124 (466)
T ss_dssp EECCSSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-
T ss_pred EecCCCCCccCcc--hhhhcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCC-
Confidence 8888888888875 888999999999999 7788876 9999999999999999999887 99999999999999976
Q ss_pred ccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhh
Q 010089 245 CKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQN 324 (518)
Q Consensus 245 ~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~ 324 (518)
..++. +.++++|++|++.+|.... +..+..+++|+.+.+.. .......+. ...
T Consensus 125 ---~~~~~--~~~l~~L~~L~l~~n~l~~-----------------~~~~~~l~~L~~L~l~~-~~~~~~~~~----~l~ 177 (466)
T 1o6v_A 125 ---TDIDP--LKNLTNLNRLELSSNTISD-----------------ISALSGLTSLQQLSFGN-QVTDLKPLA----NLT 177 (466)
T ss_dssp ---CCCGG--GTTCTTCSEEEEEEEEECC-----------------CGGGTTCTTCSEEEEEE-SCCCCGGGT----TCT
T ss_pred ---CCChH--HcCCCCCCEEECCCCccCC-----------------ChhhccCCcccEeecCC-cccCchhhc----cCC
Confidence 67776 8999999999999987632 12366677777777752 222222222 225
Q ss_pred ccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCcccccCCCccEEEEec
Q 010089 325 ITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLTWLVFVPNLKWLQIFN 404 (518)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~L~~ 404 (518)
.|+.|+++++. +... ..+..+++|+.|++++|.+....+ ++.+++|+.|++++| .+..++.+..+++|+.|++++
T Consensus 178 ~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~ 252 (466)
T 1o6v_A 178 TLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLAN 252 (466)
T ss_dssp TCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCS
T ss_pred CCCEEECcCCc-CCCC-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCC-CcccchhhhcCCCCCEEECCC
Confidence 57889998875 3433 357778888899988887775443 666888888888887 566677777788888888887
Q ss_pred Ccchhhhhcccchhccccc-------cccCCCCccCCCcceeeccCCccccccCCCCCCCCCcceEeccCCCCCcCCCCC
Q 010089 405 CDDMEEIISVEKFEKLGEV-------SEMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGISECPKLKKLPLN 477 (518)
Q Consensus 405 c~~l~~~~~~~~~~~~~~l-------~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~ 477 (518)
|. +..++.......+..+ .++. ....+++|+.|+++++ .+..++. ...+++|+.|++++| ++..++.
T Consensus 253 n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~- 326 (466)
T 1o6v_A 253 NQ-ISNLAPLSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFN-NISDISP- 326 (466)
T ss_dssp SC-CCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSS-CCSCCGG-
T ss_pred Cc-cccchhhhcCCCCCEEECCCCccCccc-cccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCC-cCCCchh-
Confidence 64 3333222111111111 1111 2456777888888775 4555543 566788888888887 5665543
Q ss_pred CCCCCCcceEEEch
Q 010089 478 SSSAKGRKIVIYGE 491 (518)
Q Consensus 478 ~~~~~~~l~~~~~~ 491 (518)
...+ .+++.++..
T Consensus 327 ~~~l-~~L~~L~l~ 339 (466)
T 1o6v_A 327 VSSL-TKLQRLFFY 339 (466)
T ss_dssp GGGC-TTCCEEECC
T ss_pred hccC-ccCCEeECC
Confidence 2222 344444443
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=2.6e-20 Score=198.71 Aligned_cols=320 Identities=16% Similarity=0.130 Sum_probs=169.5
Q ss_pred EEecCcCCCCCCchh-hhhheeecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCcc
Q 010089 145 LVRAGVGLTDAPKIE-EWEGTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGL 223 (518)
Q Consensus 145 ~~~~~~~~~~~~~~~-~~~~~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~l 223 (518)
+...+..+..+|... ...+.+++++|.+..+++..|.++++|++|++++|......|..++++++|++|++++|.++.+
T Consensus 9 ~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 88 (680)
T 1ziw_A 9 ADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL 88 (680)
T ss_dssp EECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC
T ss_pred eECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc
Confidence 334444555555422 2223388888888888887788888888888888844444466788888888888888888888
Q ss_pred ch-hhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCCCccccc------------cCCCCcchhhhh
Q 010089 224 PQ-ELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAE------------EGNVLSDDAESL 290 (518)
Q Consensus 224 p~-~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~------------~~~~~~~~~~~~ 290 (518)
|. .++++++|++|++++|.. ..+|+..++++++|++|++++|.....+... ..+..+...+..
T Consensus 89 ~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 89 SDKTFAFCTNLTELHLMSNSI----QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp CTTTTTTCTTCSEEECCSSCC----CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred ChhhhccCCCCCEEECCCCcc----CccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH
Confidence 76 488888888888888865 5666544788888888888887654321110 000000011111
Q ss_pred HHHhhcccccceEEEEEecCccc--cccccCcch-----------------------hhccceeecccCCCCCccccccc
Q 010089 291 MKEIHCLEQLNLIALSLRGSRGV--ENFLKFPKL-----------------------QNITQALHIKDCNSLPLNLLHLA 345 (518)
Q Consensus 291 ~~~l~~L~~L~~l~~~~~~~~~~--~~l~~~~~l-----------------------~~~L~~L~l~~~~~~~~~~~~l~ 345 (518)
+. ...+++|+.++++.+..... ..+.....+ ...++.|+++++......+..+.
T Consensus 165 ~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 165 LD-IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HG-GGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred hh-ccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 10 11223444444332211110 000000000 02344444444432222223333
Q ss_pred cccc--cceEEeccCcCccccccCccccccccEEEEecCCCCCCCc-ccccCCCccEEEEecCcchhhhhcccchhcccc
Q 010089 346 NMEH--LQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT-WLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGE 422 (518)
Q Consensus 346 ~l~~--L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~ 422 (518)
.++. |+.|++++|.++...+.+++.+++|++|+++++......+ .+..+++|+.|+++++..-..+.. ...+.
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~----~~lp~ 319 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL----ASLPK 319 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC----------CCE
T ss_pred ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccc----ccccc
Confidence 3332 6666666555555445555555666666665553222222 345556666666654321110000 00000
Q ss_pred ccccCCCCccCCCcceeeccCCccccccC-CCCCCCCCcceEeccCCC-CCcCCCC
Q 010089 423 VSEMMGEPILFSELELLVISNASNLKRIY-RDPLPFPHLERIGISECP-KLKKLPL 476 (518)
Q Consensus 423 l~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~i~~C~-~L~~lp~ 476 (518)
+.. ..+..+++|++|+++++ .+..++ .....+++|+.|++++|. .+..+|.
T Consensus 320 i~~--~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~ 372 (680)
T 1ziw_A 320 IDD--FSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372 (680)
T ss_dssp ECT--TTTTTCTTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECT
T ss_pred cCh--hhcccCCCCCEEECCCC-ccCCCChhHhccccCCcEEECCCCchhhhhcch
Confidence 000 14456788888888876 444443 335677888888888774 3444443
No 30
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=7.7e-21 Score=204.99 Aligned_cols=235 Identities=23% Similarity=0.193 Sum_probs=151.4
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCcc-ccCccccCEEecCCCcCC-ccchhhhcCC-CCcEeeccCC
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSSTKVR-GLPQELKALV-NLRYLNLDYT 241 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~l~-~lp~~i~~L~-~L~~L~l~~~ 241 (518)
+++.+|++....+..|.++++|++|++++|...+.+|.. ++.+++|++|++++|.++ .+|..+.+++ +|++|++++|
T Consensus 299 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N 378 (768)
T 3rgz_A 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378 (768)
T ss_dssp EECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSS
T ss_pred EECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCC
Confidence 778888887655555888888888888888444477765 778888888888888776 5777777776 6777777776
Q ss_pred cccccccCCchhhhcC--CCCCcEEeccccCCCCc-cccc-----------cCCCCcchhhhhHHHhhcccccceEEEEE
Q 010089 242 NEMCKMCKIPEQLISS--FSKLQVLRMLHCGSNHW-PIAE-----------EGNVLSDDAESLMKEIHCLEQLNLIALSL 307 (518)
Q Consensus 242 ~~l~~~~~lp~~~~~~--l~~L~~L~l~~~~~~~~-~~~~-----------~~~~~~~~~~~~~~~l~~L~~L~~l~~~~ 307 (518)
... ..+|.. +.. +++|++|++.+|..... +... ..+...+..+ ..+..+++|+.+++..
T Consensus 379 ~l~---~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~L~~ 451 (768)
T 3rgz_A 379 NFS---GPILPN-LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP---SSLGSLSKLRDLKLWL 451 (768)
T ss_dssp EEE---EECCTT-TTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC---GGGGGCTTCCEEECCS
T ss_pred CcC---CCcChh-hhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc---HHHhcCCCCCEEECCC
Confidence 553 334443 333 45555555555543210 0000 0000001112 2244455555555543
Q ss_pred ecCccccccccCcchhhccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCC
Q 010089 308 RGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKD 387 (518)
Q Consensus 308 ~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~ 387 (518)
+... ..++........|++|+++++......+..+..+++|+.|++++|.+....|.+++.+++|+.|++++|.....
T Consensus 452 n~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 529 (768)
T 3rgz_A 452 NMLE--GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529 (768)
T ss_dssp SCCC--SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred Cccc--CcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc
Confidence 3221 11122222335678888888875556667788889999999999988877888888999999999999855445
Q ss_pred Cc-ccccCCCccEEEEecCcch
Q 010089 388 LT-WLVFVPNLKWLQIFNCDDM 408 (518)
Q Consensus 388 l~-~l~~l~~L~~L~L~~c~~l 408 (518)
+| .+..+++|+.|++++|...
T Consensus 530 ~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 530 IPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEE
T ss_pred CCHHHcCCCCCCEEECCCCccC
Confidence 55 6788999999999987644
No 31
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=2.8e-20 Score=195.80 Aligned_cols=104 Identities=27% Similarity=0.316 Sum_probs=67.0
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCcc-CccccCccccCEEecCCCcCCccc-hhhhcCCCCcEeeccCCc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVRGLP-QELKALVNLRYLNLDYTN 242 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~ 242 (518)
+++++|.+..+++..|.++++|++|++++| .+..+ |..++++++|++|++++|.++.+| ..++++++|++|++++|.
T Consensus 61 L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 139 (606)
T 3vq2_A 61 LDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139 (606)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC
T ss_pred EeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc
Confidence 566666666666655666777777777766 34333 666677777777777777666655 456677777777777765
Q ss_pred ccccccCCchhhhcCCCCCcEEeccccCCC
Q 010089 243 EMCKMCKIPEQLISSFSKLQVLRMLHCGSN 272 (518)
Q Consensus 243 ~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 272 (518)
... ..+|.. ++++++|++|++.+|...
T Consensus 140 l~~--~~lp~~-~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 140 IHS--CKLPAY-FSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CCC--CCCCGG-GGTCTTCCEEECCSSCCC
T ss_pred ccc--eechHh-HhhcCCCCEEEccCCcce
Confidence 420 135654 777777777777776554
No 32
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=1.2e-20 Score=202.84 Aligned_cols=269 Identities=12% Similarity=0.033 Sum_probs=180.5
Q ss_pred cCccccCccccCEEecCCCcCCc------------------cchhhh--cCCCCcEeeccCCcccccccCCchhhhcCCC
Q 010089 200 LPVGISSLVSLHHLDLSSTKVRG------------------LPQELK--ALVNLRYLNLDYTNEMCKMCKIPEQLISSFS 259 (518)
Q Consensus 200 lp~~i~~L~~L~~L~l~~~~l~~------------------lp~~i~--~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~ 259 (518)
+|..++++++|++|++++|.++. +|..++ ++++|++|++++|... ..+|.. +++++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~---~~iP~~-l~~L~ 515 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM---TQLPDF-LYDLP 515 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC---CSCCGG-GGGCS
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC---ccChHH-HhCCC
Confidence 78899999999999999999998 999988 9999999999999876 788876 89999
Q ss_pred CCcEEeccccC-CCCccccccCCCCcc-hhhhhHHHhh----cccccceEEEEEecCccccccccCcchhhccceeeccc
Q 010089 260 KLQVLRMLHCG-SNHWPIAEEGNVLSD-DAESLMKEIH----CLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKD 333 (518)
Q Consensus 260 ~L~~L~l~~~~-~~~~~~~~~~~~~~~-~~~~~~~~l~----~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~ 333 (518)
+|++|++.+|. .. + ..+..+..+. .+++|+.++++.+....++... .......|+.|++++
T Consensus 516 ~L~~L~Ls~N~~ls------------g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~-~l~~L~~L~~L~Ls~ 582 (876)
T 4ecn_A 516 ELQSLNIACNRGIS------------AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA-SLQKMVKLGLLDCVH 582 (876)
T ss_dssp SCCEEECTTCTTSC------------HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHH-HHTTCTTCCEEECTT
T ss_pred CCCEEECcCCCCcc------------cccchHHHHhhhhcccccCCccEEEeeCCcCCccCChh-hhhcCCCCCEEECCC
Confidence 99999999986 42 1 2334344332 4447777777655443322200 112234678889888
Q ss_pred CCCCCccccccccccccceEEeccCcCccccccCcccccc-ccEEEEecCCCCCCCc-ccccC--CCccEEEEecCcchh
Q 010089 334 CNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQK-MLKLHFVNCSNVKDLT-WLVFV--PNLKWLQIFNCDDME 409 (518)
Q Consensus 334 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~-L~~L~l~~c~~l~~l~-~l~~l--~~L~~L~L~~c~~l~ 409 (518)
+. +..++ .+..+++|+.|++++|.+.. .|.++..+++ |+.|++++|. +..+| .+..+ ++|+.|++++|....
T Consensus 583 N~-l~~lp-~~~~L~~L~~L~Ls~N~l~~-lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 583 NK-VRHLE-AFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp SC-CCBCC-CCCTTSEESEEECCSSCCSC-CCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred CC-cccch-hhcCCCcceEEECcCCcccc-chHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCC
Confidence 75 34665 77888889999998887774 5667788888 9999998884 44665 33333 348888888765433
Q ss_pred hhhccc------chhccccc-------cccCCCC-ccCCCcceeeccCCccccccCCCCCC--------CCCcceEeccC
Q 010089 410 EIISVE------KFEKLGEV-------SEMMGEP-ILFSELELLVISNASNLKRIYRDPLP--------FPHLERIGISE 467 (518)
Q Consensus 410 ~~~~~~------~~~~~~~l-------~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~--------~~~L~~L~i~~ 467 (518)
.++... ....+..+ ..++... ..+++|+.|+++++ .+..+|..... +++|+.|++++
T Consensus 659 ~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp TSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred ccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCC
Confidence 222110 00011111 1111111 25678888888875 66677665433 23888899988
Q ss_pred CCCCcCCCCCCC--CCCCcceEEEchh
Q 010089 468 CPKLKKLPLNSS--SAKGRKIVIYGEK 492 (518)
Q Consensus 468 C~~L~~lp~~~~--~~~~~l~~~~~~~ 492 (518)
| +++.+|..+. .+ .+|+.++...
T Consensus 738 N-~L~~lp~~l~~~~l-~~L~~L~Ls~ 762 (876)
T 4ecn_A 738 N-KLTSLSDDFRATTL-PYLSNMDVSY 762 (876)
T ss_dssp S-CCCCCCGGGSTTTC-TTCCEEECCS
T ss_pred C-CCccchHHhhhccC-CCcCEEEeCC
Confidence 7 7888887665 33 4555555543
No 33
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=1.4e-20 Score=195.59 Aligned_cols=101 Identities=29% Similarity=0.370 Sum_probs=55.6
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCcc-CccccCccccCEEecCCCcCCccchh-hhcCCCCcEeeccCCc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVRGLPQE-LKALVNLRYLNLDYTN 242 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 242 (518)
+++++|++..+++..|.++++|++|++++| .+..+ |..++.+++|++|++++|.++++|.. ++++++|++|++++|.
T Consensus 31 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 109 (549)
T 2z81_A 31 LDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109 (549)
T ss_dssp EECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC
T ss_pred EECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc
Confidence 566666666555544666666666666666 33333 34566666666666666666655443 5666666666666654
Q ss_pred cccccc-CCchhhhcCCCCCcEEeccccC
Q 010089 243 EMCKMC-KIPEQLISSFSKLQVLRMLHCG 270 (518)
Q Consensus 243 ~l~~~~-~lp~~~~~~l~~L~~L~l~~~~ 270 (518)
.. . ..|.. ++++++|++|++.+|.
T Consensus 110 l~---~~~~~~~-~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 110 YQ---TLGVTSL-FPNLTNLQTLRIGNVE 134 (549)
T ss_dssp CS---SSCSSCS-CTTCTTCCEEEEEESS
T ss_pred cc---ccchhhh-hhccCCccEEECCCCc
Confidence 31 1 12222 5555555555555554
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=1.4e-19 Score=175.35 Aligned_cols=258 Identities=17% Similarity=0.193 Sum_probs=154.5
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCc-cccCccccCEEecCCCcCCcc-chhhhcCCCCcEeeccCCc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLHHLDLSSTKVRGL-PQELKALVNLRYLNLDYTN 242 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~ 242 (518)
+++.++.+..+|.. + .+.|++|++++| .+..+|. .++++++|++|++++|.++.+ |..+.++++|++|++++|.
T Consensus 36 l~~~~~~l~~lp~~-~--~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (330)
T 1xku_A 36 VQCSDLGLEKVPKD-L--PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111 (330)
T ss_dssp EECTTSCCCSCCCS-C--CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred EEecCCCccccCcc-C--CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence 77888888888865 2 378999999999 5666654 789999999999999999986 7889999999999999997
Q ss_pred ccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcch
Q 010089 243 EMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKL 322 (518)
Q Consensus 243 ~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l 322 (518)
. ..+|.. + .++|++|++.+|.... .. ...+..+++|+.+++..+.............-
T Consensus 112 l----~~l~~~-~--~~~L~~L~l~~n~l~~------------~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 169 (330)
T 1xku_A 112 L----KELPEK-M--PKTLQELRVHENEITK------------VR---KSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169 (330)
T ss_dssp C----SBCCSS-C--CTTCCEEECCSSCCCB------------BC---HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG
T ss_pred C----CccChh-h--cccccEEECCCCcccc------------cC---HhHhcCCccccEEECCCCcCCccCcChhhccC
Confidence 5 778875 3 2799999999887632 11 22345566666666554332111111111111
Q ss_pred hhccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCc--ccccCCCccEE
Q 010089 323 QNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT--WLVFVPNLKWL 400 (518)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L 400 (518)
...|+.|+++++. +..++..+. ++|+.|++++|.++...+..+..+++|++|+++++. +..++ .+..+++|+.|
T Consensus 170 l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 245 (330)
T 1xku_A 170 MKKLSYIRIADTN-ITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLREL 245 (330)
T ss_dssp CTTCCEEECCSSC-CCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEE
T ss_pred CCCcCEEECCCCc-cccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEE
Confidence 2345556665543 233332222 456666666665555445555556666666665552 33222 34555666666
Q ss_pred EEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCCCC-------CCCCcceEeccCCC
Q 010089 401 QIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRDPL-------PFPHLERIGISECP 469 (518)
Q Consensus 401 ~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~-------~~~~L~~L~i~~C~ 469 (518)
++++|. +..++. .+..+++|++|+++++ .++.++.... ..++|+.|++.+.|
T Consensus 246 ~L~~N~-l~~lp~---------------~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 246 HLNNNK-LVKVPG---------------GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp ECCSSC-CSSCCT---------------TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred ECCCCc-CccCCh---------------hhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence 665542 222221 3445556666666553 4444433211 13455555555543
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=1.1e-19 Score=188.97 Aligned_cols=150 Identities=22% Similarity=0.301 Sum_probs=112.7
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCcc-ccCccccCEEecCCCcCCc--cchhhhcCCCCcEeeccCC
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSSTKVRG--LPQELKALVNLRYLNLDYT 241 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~ 241 (518)
+++++|++..+++..|.++++|++|++++| .+..+|.. ++++++|++|++++|.++. .|..++++++|++|++++|
T Consensus 55 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n 133 (549)
T 2z81_A 55 LILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133 (549)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred EECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCC
Confidence 889999999998878999999999999999 55555544 9999999999999998885 4678899999999999998
Q ss_pred cccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcc
Q 010089 242 NEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPK 321 (518)
Q Consensus 242 ~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~ 321 (518)
... ..+|...+.++++|++|++.+|.... .....+..+++|+.+++..+......... ..
T Consensus 134 ~~~---~~~~~~~~~~l~~L~~L~L~~n~l~~---------------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~--~~ 193 (549)
T 2z81_A 134 ETF---SEIRRIDFAGLTSLNELEIKALSLRN---------------YQSQSLKSIRDIHHLTLHLSESAFLLEIF--AD 193 (549)
T ss_dssp SSC---CEECTTTTTTCCEEEEEEEEETTCCE---------------ECTTTTTTCSEEEEEEEECSBSTTHHHHH--HH
T ss_pred ccc---cccCHhhhhcccccCeeeccCCcccc---------------cChhhhhccccCceEecccCcccccchhh--Hh
Confidence 755 66775558899999999999887632 12234566777777777755432222110 11
Q ss_pred hhhccceeecccCC
Q 010089 322 LQNITQALHIKDCN 335 (518)
Q Consensus 322 l~~~L~~L~l~~~~ 335 (518)
....|++|+++++.
T Consensus 194 ~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 194 ILSSVRYLELRDTN 207 (549)
T ss_dssp STTTBSEEEEESCB
T ss_pred hcccccEEEccCCc
Confidence 23568899998875
No 36
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=5.7e-20 Score=179.87 Aligned_cols=268 Identities=15% Similarity=0.115 Sum_probs=140.7
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCc-cccCccccCEEecCCCcCCccc-hhhhcCCCCcEeeccCCc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLHHLDLSSTKVRGLP-QELKALVNLRYLNLDYTN 242 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~ 242 (518)
.+.++++++.+|..+. ++|++|++++| .++.+|. .+.++++|++|++++|.++.++ ..+.++++|++|++++|.
T Consensus 36 c~~~~~~l~~iP~~~~---~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT---EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EECCSTTCSSCCTTCC---TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eeCCCCCccccccccc---ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 3444445555554321 34555555555 3444433 4555555555555555555532 335555555555555554
Q ss_pred ccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEec-CccccccccCcc
Q 010089 243 EMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG-SRGVENFLKFPK 321 (518)
Q Consensus 243 ~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~-~~~~~~l~~~~~ 321 (518)
. ..+|.+.+.++++|++|++.+|.....+ . ...+..+++|+.+++..+. ..... .....
T Consensus 112 l----~~~~~~~~~~l~~L~~L~L~~n~l~~l~-------------~-~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~ 171 (353)
T 2z80_A 112 L----SNLSSSWFKPLSSLTFLNLLGNPYKTLG-------------E-TSLFSHLTKLQILRVGNMDTFTKIQ--RKDFA 171 (353)
T ss_dssp C----SSCCHHHHTTCTTCSEEECTTCCCSSSC-------------S-SCSCTTCTTCCEEEEEESSSCCEEC--TTTTT
T ss_pred C----CcCCHhHhCCCccCCEEECCCCCCcccC-------------c-hhhhccCCCCcEEECCCCccccccC--HHHcc
Confidence 3 4444444455555555555554432100 0 0112333444444444321 00000 00001
Q ss_pred hhhccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCc-----ccccCCC
Q 010089 322 LQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT-----WLVFVPN 396 (518)
Q Consensus 322 l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-----~l~~l~~ 396 (518)
....|++|+++++......+..+..+++|+.|++++|.+..........+++|+.|+++++. +...+ .....+.
T Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~ 250 (353)
T 2z80_A 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSL 250 (353)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB-CTTCCCC------CCCC
T ss_pred CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc-cccccccccccccccch
Confidence 11335566666554322224566777888888888887765444444557888888888773 33322 2234667
Q ss_pred ccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCCC-CCCCCcceEeccCCC
Q 010089 397 LKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRDP-LPFPHLERIGISECP 469 (518)
Q Consensus 397 L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~i~~C~ 469 (518)
++.++++++..-..-.. .++..+..+++|+.|+++++ .++.+|... ..+++|+.|++++++
T Consensus 251 l~~l~L~~~~l~~~~l~-----------~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 251 IKKFTFRNVKITDESLF-----------QVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCEEEEESCBCCHHHHH-----------HHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhccccccccccCcchh-----------hhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 77888877542111000 11114557889999999986 778888765 678999999998874
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.83 E-value=8.4e-20 Score=188.46 Aligned_cols=99 Identities=24% Similarity=0.255 Sum_probs=86.7
Q ss_pred eeecccccccccChhhhCCCCCCcEEEeecCCCcCccC-ccccCccccCEEecCCCcCCcc-chhhhcCCCCcEeeccCC
Q 010089 164 TLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDLSSTKVRGL-PQELKALVNLRYLNLDYT 241 (518)
Q Consensus 164 ~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~ 241 (518)
.+++++|+++.+|..+. ++|++|++++| .+..++ ..+.++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus 4 ~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS---QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp EEECTTSCCSSCCCSCC---TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred eEecCCCCccccccccc---ccccEEECCCC-cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 48899999999997633 89999999999 566554 6899999999999999999996 778999999999999999
Q ss_pred cccccccCCchhhhcCCCCCcEEeccccCCCC
Q 010089 242 NEMCKMCKIPEQLISSFSKLQVLRMLHCGSNH 273 (518)
Q Consensus 242 ~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~ 273 (518)
.. ..+|.. .+++|++|++++|....
T Consensus 80 ~l----~~lp~~---~l~~L~~L~L~~N~l~~ 104 (520)
T 2z7x_B 80 KL----VKISCH---PTVNLKHLDLSFNAFDA 104 (520)
T ss_dssp CC----CEEECC---CCCCCSEEECCSSCCSS
T ss_pred ce----eecCcc---ccCCccEEeccCCcccc
Confidence 76 778874 89999999999998754
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=2.5e-19 Score=191.16 Aligned_cols=212 Identities=19% Similarity=0.170 Sum_probs=128.5
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCc-cccCccccCEEecCCCcCCccc-hhhhcCCCCcEeeccCCc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLHHLDLSSTKVRGLP-QELKALVNLRYLNLDYTN 242 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~ 242 (518)
+++++|.+..+++..|.++++|++|++++| .+..+|. .++++++|++|++++|.++.+| ..++++++|++|++++|.
T Consensus 54 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 132 (680)
T 1ziw_A 54 LDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG 132 (680)
T ss_dssp EECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc
Confidence 777778887777777788888888888887 5666665 4778888888888888777765 457788888888888876
Q ss_pred ccccccCCchhhhcCCCCCcEEeccccCCCCccccc--------------cCCCCcchhhhhHHHhhcc-----------
Q 010089 243 EMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAE--------------EGNVLSDDAESLMKEIHCL----------- 297 (518)
Q Consensus 243 ~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~~L----------- 297 (518)
. ...+.+.+.++++|++|++.+|.....+... ..+......+..+..+.++
T Consensus 133 l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 208 (680)
T 1ziw_A 133 L----SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208 (680)
T ss_dssp C----SCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCH
T ss_pred c----cccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccC
Confidence 5 3333333677778888887777654433210 1111111222222222222
Q ss_pred -------------cccceEEEEEecCccccccccCcchh-hccceeecccCCCCCccccccccccccceEEeccCcCccc
Q 010089 298 -------------EQLNLIALSLRGSRGVENFLKFPKLQ-NITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDW 363 (518)
Q Consensus 298 -------------~~L~~l~~~~~~~~~~~~l~~~~~l~-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 363 (518)
++|+.+++..+...... -..+..+. ..|+.|+++++......+..+..+++|+.|++++|.+...
T Consensus 209 ~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~-~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (680)
T 1ziw_A 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTS-NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287 (680)
T ss_dssp HHHHHHHHHHHTTSCCCEEECTTSCCCEEC-TTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE
T ss_pred hhhHHHHHHHhhhccccEEEccCCcccccC-hhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc
Confidence 33444443322111100 00111111 2388888888753322335677788888888888877766
Q ss_pred cccCccccccccEEEEecC
Q 010089 364 NVDCAGEVQKMLKLHFVNC 382 (518)
Q Consensus 364 ~~~~~~~l~~L~~L~l~~c 382 (518)
.+..+..+++|+.|+++++
T Consensus 288 ~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 288 FSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp CTTTTTTCTTCCEEECTTC
T ss_pred ChhhhcCCCCccEEeccch
Confidence 6666677777777777654
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=1.4e-19 Score=182.69 Aligned_cols=93 Identities=27% Similarity=0.294 Sum_probs=63.2
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCccc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEM 244 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l 244 (518)
+++++|.+..+| . +..+++|++|++++| .+..+| ++.+++|++|++++|.++.+| ++++++|++|++++|..
T Consensus 47 L~Ls~n~l~~~~-~-l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l- 118 (457)
T 3bz5_A 47 LDCHNSSITDMT-G-IEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKL- 118 (457)
T ss_dssp EECCSSCCCCCT-T-GGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCC-
T ss_pred EEccCCCcccCh-h-hcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcC-
Confidence 666777777665 2 667777777777777 555554 667777777777777777764 66777777777777754
Q ss_pred ccccCCchhhhcCCCCCcEEeccccCC
Q 010089 245 CKMCKIPEQLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 245 ~~~~~lp~~~~~~l~~L~~L~l~~~~~ 271 (518)
..+| ++.+++|++|++.+|..
T Consensus 119 ---~~l~---~~~l~~L~~L~l~~N~l 139 (457)
T 3bz5_A 119 ---TKLD---VSQNPLLTYLNCARNTL 139 (457)
T ss_dssp ---SCCC---CTTCTTCCEEECTTSCC
T ss_pred ---Ceec---CCCCCcCCEEECCCCcc
Confidence 4443 56677777777776655
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=1.1e-19 Score=176.15 Aligned_cols=260 Identities=16% Similarity=0.161 Sum_probs=192.8
Q ss_pred eeecccccccccChhhhCCCCCCcEEEeecCCCcCcc-CccccCccccCEEecCCCcCCcc-chhhhcCCCCcEeeccCC
Q 010089 164 TLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVRGL-PQELKALVNLRYLNLDYT 241 (518)
Q Consensus 164 ~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~ 241 (518)
.+++.++.+..+|..+ .++|++|++++| .+..+ |..++++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus 37 ~l~~~~~~l~~ip~~~---~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 37 VVQCSDLGLKAVPKEI---SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp EEECCSSCCSSCCSCC---CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred EEECCCCCccccCCCC---CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 3788889999998763 378999999999 56666 55899999999999999999986 778999999999999999
Q ss_pred cccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcc
Q 010089 242 NEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPK 321 (518)
Q Consensus 242 ~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~ 321 (518)
.. ..+|.. +. ++|++|++.+|..... . ...+..+++|+.+++..+.............
T Consensus 113 ~l----~~l~~~-~~--~~L~~L~l~~n~i~~~------------~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 170 (332)
T 2ft3_A 113 HL----VEIPPN-LP--SSLVELRIHDNRIRKV------------P---KGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170 (332)
T ss_dssp CC----CSCCSS-CC--TTCCEEECCSSCCCCC------------C---SGGGSSCSSCCEEECCSCCCBGGGSCTTSSC
T ss_pred cC----CccCcc-cc--ccCCEEECCCCccCcc------------C---HhHhCCCccCCEEECCCCccccCCCCccccc
Confidence 76 788875 33 8999999999877431 1 1224567777777776544322111111111
Q ss_pred hhhccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCc--ccccCCCccE
Q 010089 322 LQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT--WLVFVPNLKW 399 (518)
Q Consensus 322 l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~l~~l~~L~~ 399 (518)
.. .|+.|+++++. +..++..+. ++|+.|++++|.++...+..+..+++|++|+++++ .+..++ .+..+++|+.
T Consensus 171 ~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 245 (332)
T 2ft3_A 171 GL-KLNYLRISEAK-LTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRE 245 (332)
T ss_dssp SC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCE
T ss_pred CC-ccCEEECcCCC-CCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCE
Confidence 11 67889998875 444554333 68999999999888877788888999999999988 455444 5788999999
Q ss_pred EEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCCC-C------CCCCcceEeccCCCCC
Q 010089 400 LQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRDP-L------PFPHLERIGISECPKL 471 (518)
Q Consensus 400 L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~------~~~~L~~L~i~~C~~L 471 (518)
|+++++. +..++. .+..+++|+.|+++++ .++.++... . .+++|+.|++.++|-.
T Consensus 246 L~L~~N~-l~~lp~---------------~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 246 LHLDNNK-LSRVPA---------------GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp EECCSSC-CCBCCT---------------TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred EECCCCc-CeecCh---------------hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCccc
Confidence 9999864 444433 5678899999999985 677765432 1 2578999999998743
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=3e-19 Score=180.32 Aligned_cols=212 Identities=18% Similarity=0.207 Sum_probs=141.1
Q ss_pred cCcCCCCCCchhhhhhe--eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccch
Q 010089 148 AGVGLTDAPKIEEWEGT--LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQ 225 (518)
Q Consensus 148 ~~~~~~~~~~~~~~~~~--l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~ 225 (518)
.+..+..+|........ +++++|++..++ +..+++|++|++++| .+..+| ++.+++|++|++++|.++.+|
T Consensus 50 s~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L~L~~N~l~~l~- 122 (457)
T 3bz5_A 50 HNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTNKLTKLD- 122 (457)
T ss_dssp CSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEECCSSCCSCCC-
T ss_pred cCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcCCEEECCCCcCCeec-
Confidence 33444455544433333 888999988875 788999999999999 677665 888999999999999998886
Q ss_pred hhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEE
Q 010089 226 ELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIAL 305 (518)
Q Consensus 226 ~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~ 305 (518)
++++++|++|++++|.. ..++ ++.+++|++|++.+|.... .. .+..+++|+.+++
T Consensus 123 -~~~l~~L~~L~l~~N~l----~~l~---l~~l~~L~~L~l~~n~~~~------------~~-----~~~~l~~L~~L~l 177 (457)
T 3bz5_A 123 -VSQNPLLTYLNCARNTL----TEID---VSHNTQLTELDCHLNKKIT------------KL-----DVTPQTQLTTLDC 177 (457)
T ss_dssp -CTTCTTCCEEECTTSCC----SCCC---CTTCTTCCEEECTTCSCCC------------CC-----CCTTCTTCCEEEC
T ss_pred -CCCCCcCCEEECCCCcc----ceec---cccCCcCCEEECCCCCccc------------cc-----ccccCCcCCEEEC
Confidence 88899999999999876 5553 6788899999998884321 01 2445666666666
Q ss_pred EEecCccccccccCcchhhccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCC
Q 010089 306 SLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNV 385 (518)
Q Consensus 306 ~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l 385 (518)
+.+....++ + .....|+.|+++++. +..+ .+..+++|+.|++++|.++.+ | +..+++|+.|+++++ .+
T Consensus 178 s~n~l~~l~-l----~~l~~L~~L~l~~N~-l~~~--~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N-~l 245 (457)
T 3bz5_A 178 SFNKITELD-V----SQNKLLNRLNCDTNN-ITKL--DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVN-PL 245 (457)
T ss_dssp CSSCCCCCC-C----TTCTTCCEEECCSSC-CSCC--CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSS-CC
T ss_pred CCCccceec-c----ccCCCCCEEECcCCc-CCee--ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCC-cC
Confidence 544433322 1 112446777777654 2332 356667777777777766653 2 556677777777766 44
Q ss_pred CCCcccccCCCccEEEEec
Q 010089 386 KDLTWLVFVPNLKWLQIFN 404 (518)
Q Consensus 386 ~~l~~l~~l~~L~~L~L~~ 404 (518)
..++ ...+++|+.|++++
T Consensus 246 ~~~~-~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 246 TELD-VSTLSKLTTLHCIQ 263 (457)
T ss_dssp SCCC-CTTCTTCCEEECTT
T ss_pred CCcC-HHHCCCCCEEeccC
Confidence 4444 34455555554443
No 42
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=6.2e-19 Score=192.14 Aligned_cols=289 Identities=17% Similarity=0.183 Sum_probs=194.5
Q ss_pred eecccc-cccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCc-cchh--hhcCCCCcEeeccC
Q 010089 165 LLLEYN-HIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRG-LPQE--LKALVNLRYLNLDY 240 (518)
Q Consensus 165 l~l~~~-~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~ 240 (518)
+++++| .+..+++..|.++++|++|+|++|......|..++++.+|++|++++|.+.+ +|.. ++++++|++|++++
T Consensus 53 LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~ 132 (844)
T 3j0a_A 53 LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132 (844)
T ss_dssp EEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEES
T ss_pred EeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCC
Confidence 888888 4556767779999999999999994444458899999999999999999887 5665 89999999999999
Q ss_pred CcccccccCCchhhhcCCCCCcEEeccccCCCCccccc--------------cCCCCcchhhhhHHHhhc---ccccceE
Q 010089 241 TNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAE--------------EGNVLSDDAESLMKEIHC---LEQLNLI 303 (518)
Q Consensus 241 ~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~~---L~~L~~l 303 (518)
|... ...+...++++++|++|++.+|......... ..+......+..+..+.+ ...|+.+
T Consensus 133 N~l~---~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L 209 (844)
T 3j0a_A 133 NQIR---SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209 (844)
T ss_dssp CCCC---CCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEE
T ss_pred Cccc---ccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEE
Confidence 9763 3333334899999999999998764321100 000000000000000000 0014444
Q ss_pred EEEEecCc--ccccccc---------------------------------Ccch-hhccceeecccCCCCCccccccccc
Q 010089 304 ALSLRGSR--GVENFLK---------------------------------FPKL-QNITQALHIKDCNSLPLNLLHLANM 347 (518)
Q Consensus 304 ~~~~~~~~--~~~~l~~---------------------------------~~~l-~~~L~~L~l~~~~~~~~~~~~l~~l 347 (518)
+++.+... ....+.. +..+ ...++.|+++++......+..+..+
T Consensus 210 ~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l 289 (844)
T 3j0a_A 210 DVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289 (844)
T ss_dssp BCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC
T ss_pred ecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC
Confidence 44322100 0000000 0000 2458889998875433334678889
Q ss_pred cccceEEeccCcCccccccCccccccccEEEEecCCCCCCC-c-ccccCCCccEEEEecCcchhhhhcccchhccccccc
Q 010089 348 EHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDL-T-WLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSE 425 (518)
Q Consensus 348 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~ 425 (518)
++|+.|++++|.+....+..+..+++|++|+++++. +..+ + .+..+++|+.|+++++. +..++.
T Consensus 290 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~------------ 355 (844)
T 3j0a_A 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYIDLQKNH-IAIIQD------------ 355 (844)
T ss_dssp CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC-CSCCCSCSCSSCTTCCEEECCSCC-CCCCCS------------
T ss_pred CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC-CCccCHHHhcCCCCCCEEECCCCC-CCccCh------------
Confidence 999999999999888778888999999999999984 4444 3 67889999999999874 444332
Q ss_pred cCCCCccCCCcceeeccCCccccccCCCCCCCCCcceEeccCCCCCcCCCCCC
Q 010089 426 MMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGISECPKLKKLPLNS 478 (518)
Q Consensus 426 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~ 478 (518)
..+..+++|+.|+++++ .+..++ .+++|+.|.++++ +++.+|...
T Consensus 356 --~~~~~l~~L~~L~Ls~N-~l~~i~----~~~~L~~L~l~~N-~l~~l~~~~ 400 (844)
T 3j0a_A 356 --QTFKFLEKLQTLDLRDN-ALTTIH----FIPSIPDIFLSGN-KLVTLPKIN 400 (844)
T ss_dssp --SCSCSCCCCCEEEEETC-CSCCCS----SCCSCSEEEEESC-CCCCCCCCC
T ss_pred --hhhcCCCCCCEEECCCC-CCCccc----CCCCcchhccCCC-Ccccccccc
Confidence 14567889999999886 555544 3788888888886 666776553
No 43
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.81 E-value=7.5e-19 Score=183.00 Aligned_cols=309 Identities=15% Similarity=0.151 Sum_probs=198.9
Q ss_pred heeecccccccccChhhhCCCCCCcEEEeecCCCcCccC-ccccCccccCEEecCCCcCCcc-chhhhcCCCCcEeeccC
Q 010089 163 GTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDLSSTKVRGL-PQELKALVNLRYLNLDY 240 (518)
Q Consensus 163 ~~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~ 240 (518)
+.+++++++++.+|.... ++|++|++++| .+..+| ..++++++|++|++++|.++.+ |..+.++++|++|++++
T Consensus 34 ~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP---PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCCSCCTTSC---TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCccCCCCCC---CCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 348999999999998633 89999999999 566665 6899999999999999999997 67799999999999999
Q ss_pred CcccccccCCchhhhcCCCCCcEEeccccCCCCcccc-c------------cCCCCcchhhhhHHHhhcccccceEEEEE
Q 010089 241 TNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIA-E------------EGNVLSDDAESLMKEIHCLEQLNLIALSL 307 (518)
Q Consensus 241 ~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~-~------------~~~~~~~~~~~~~~~l~~L~~L~~l~~~~ 307 (518)
|.. ..+|.. .+++|++|++++|.....+.. . ..+.... ..+..+.++ +|+.+++..
T Consensus 110 N~l----~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L-~L~~L~L~~ 178 (562)
T 3a79_B 110 NRL----QNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHL-HLSCILLDL 178 (562)
T ss_dssp SCC----CEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTS-CEEEEEEEE
T ss_pred CcC----CccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---Cchhhhhhc-eeeEEEeec
Confidence 976 778874 899999999999987653321 0 1111111 122223333 336666654
Q ss_pred ecC--cc--ccccccCc--------------------------c------------------------------------
Q 010089 308 RGS--RG--VENFLKFP--------------------------K------------------------------------ 321 (518)
Q Consensus 308 ~~~--~~--~~~l~~~~--------------------------~------------------------------------ 321 (518)
+.. .. ...+..+. .
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence 432 00 00111100 0
Q ss_pred ---------------hhhccceeecccCCCCCcccccc------------------------------------------
Q 010089 322 ---------------LQNITQALHIKDCNSLPLNLLHL------------------------------------------ 344 (518)
Q Consensus 322 ---------------l~~~L~~L~l~~~~~~~~~~~~l------------------------------------------ 344 (518)
....+++|+++++.....++..+
T Consensus 259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEE
T ss_pred CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEc
Confidence 00145566665553211222111
Q ss_pred -----------ccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCc----ccccCCCccEEEEecCcchh
Q 010089 345 -----------ANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT----WLVFVPNLKWLQIFNCDDME 409 (518)
Q Consensus 345 -----------~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~----~l~~l~~L~~L~L~~c~~l~ 409 (518)
..+++|+.|++++|.++...|.++..+++|+.|+++++ .+..++ .+..+++|+.|+++++....
T Consensus 339 ~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp ESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred cCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence 45677888888888777666777778888888888877 455443 35678888888888765332
Q ss_pred hhhcccchhccccccccC--------CCCccC-CCcceeeccCCccccccCCCCCCCCCcceEeccCCCCCcCCCCC-CC
Q 010089 410 EIISVEKFEKLGEVSEMM--------GEPILF-SELELLVISNASNLKRIYRDPLPFPHLERIGISECPKLKKLPLN-SS 479 (518)
Q Consensus 410 ~~~~~~~~~~~~~l~~~~--------~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~-~~ 479 (518)
.++.. .......+..+. .....+ ++|+.|+++++ .++.+|.....+++|+.|+++++ +++.+|.. +.
T Consensus 418 ~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~ 494 (562)
T 3a79_B 418 HAYDR-TCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFD 494 (562)
T ss_dssp CCSSC-CCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTT
T ss_pred ccChh-hhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHh
Confidence 23321 111111111100 011123 68999999886 78888888888999999999997 78899987 44
Q ss_pred CCCCcceEEEch
Q 010089 480 SAKGRKIVIYGE 491 (518)
Q Consensus 480 ~~~~~l~~~~~~ 491 (518)
.+ .+++.++..
T Consensus 495 ~l-~~L~~L~l~ 505 (562)
T 3a79_B 495 RL-TSLQYIWLH 505 (562)
T ss_dssp TC-TTCCCEECC
T ss_pred cC-CCCCEEEec
Confidence 44 355555443
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=2.2e-19 Score=172.06 Aligned_cols=239 Identities=16% Similarity=0.216 Sum_probs=126.9
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCcc-ccCccccCEEecCCCcCCcc---chhhhcCCCCcEeeccC
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSSTKVRGL---PQELKALVNLRYLNLDY 240 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~l~~l---p~~i~~L~~L~~L~l~~ 240 (518)
++..+++++.+|... .++|++|++++| .++.+|.. +.++++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 12 l~c~~~~l~~ip~~~---~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 12 IRCNSKGLTSVPTGI---PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EECCSSCCSSCCSCC---CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEcCCCCcccCCCCC---CCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 455555566666532 246666666666 45555544 46666677777666666543 45566666677777766
Q ss_pred CcccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCc
Q 010089 241 TNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFP 320 (518)
Q Consensus 241 ~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~ 320 (518)
|.. ..+|.. +..+++|++|++.++..... + ....+..+++
T Consensus 88 n~i----~~l~~~-~~~l~~L~~L~l~~n~l~~~-------------~-~~~~~~~l~~--------------------- 127 (306)
T 2z66_A 88 NGV----ITMSSN-FLGLEQLEHLDFQHSNLKQM-------------S-EFSVFLSLRN--------------------- 127 (306)
T ss_dssp CSE----EEEEEE-EETCTTCCEEECTTSEEESS-------------T-TTTTTTTCTT---------------------
T ss_pred Ccc----ccChhh-cCCCCCCCEEECCCCccccc-------------c-cchhhhhccC---------------------
Confidence 654 445554 56666666666666543110 0 0011122222
Q ss_pred chhhccceeecccCCCCCccccccccccccceEEeccCcCcc-ccccCccccccccEEEEecCCCCCCC-c-ccccCCCc
Q 010089 321 KLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED-WNVDCAGEVQKMLKLHFVNCSNVKDL-T-WLVFVPNL 397 (518)
Q Consensus 321 ~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~c~~l~~l-~-~l~~l~~L 397 (518)
|++|+++++......+..+..+++|+.|++++|.+.. ..|..+..+++|++|++++| .+..+ + .+..+++|
T Consensus 128 -----L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 201 (306)
T 2z66_A 128 -----LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSL 201 (306)
T ss_dssp -----CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTC
T ss_pred -----CCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCC
Confidence 2333443332111122344555666666666665543 34555666666666666666 33332 2 45556666
Q ss_pred cEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCCCCCCC-CcceEeccCC
Q 010089 398 KWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRDPLPFP-HLERIGISEC 468 (518)
Q Consensus 398 ~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~-~L~~L~i~~C 468 (518)
++|+++++. +..++. ..+..+++|+.|+++++.--...+.....++ +|+.|+++++
T Consensus 202 ~~L~L~~N~-l~~~~~--------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 202 QVLNMSHNN-FFSLDT--------------FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp CEEECTTSC-CSBCCS--------------GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred CEEECCCCc-cCccCh--------------hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 666666653 222211 0234566777777776533233333445553 6777777665
No 45
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=2.1e-19 Score=172.17 Aligned_cols=238 Identities=20% Similarity=0.185 Sum_probs=167.9
Q ss_pred EEecCcCCCCCCchh-hhhheeecccccccccChhhhCCCCCCcEEEeecCCCcCcc---CccccCccccCEEecCCCcC
Q 010089 145 LVRAGVGLTDAPKIE-EWEGTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL---PVGISSLVSLHHLDLSSTKV 220 (518)
Q Consensus 145 ~~~~~~~~~~~~~~~-~~~~~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l---p~~i~~L~~L~~L~l~~~~l 220 (518)
+...+..+..+|... .....+++.+|++..+++..|.++++|++|++++| .+..+ |..+..+++|++|++++|.+
T Consensus 12 l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i 90 (306)
T 2z66_A 12 IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGV 90 (306)
T ss_dssp EECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCSE
T ss_pred EEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCcc
Confidence 334445555665422 22234899999999999988999999999999999 55544 66778899999999999999
Q ss_pred CccchhhhcCCCCcEeeccCCcccccccCCch-hhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccc
Q 010089 221 RGLPQELKALVNLRYLNLDYTNEMCKMCKIPE-QLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQ 299 (518)
Q Consensus 221 ~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 299 (518)
..+|..+..+++|++|++++|.. ..++. ..+..+++|++|++.+|.... ..+ ..+..+++
T Consensus 91 ~~l~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~---~~~~~l~~ 151 (306)
T 2z66_A 91 ITMSSNFLGLEQLEHLDFQHSNL----KQMSEFSVFLSLRNLIYLDISHTHTRV------------AFN---GIFNGLSS 151 (306)
T ss_dssp EEEEEEEETCTTCCEEECTTSEE----ESSTTTTTTTTCTTCCEEECTTSCCEE------------CST---TTTTTCTT
T ss_pred ccChhhcCCCCCCCEEECCCCcc----cccccchhhhhccCCCEEECCCCcCCc------------cch---hhcccCcC
Confidence 99999999999999999999976 55654 448899999999999886521 011 11223333
Q ss_pred cceEEEEEecCccccccccCcchhhccceeecccCCCCC-ccccccccccccceEEeccCcCccccccCccccccccEEE
Q 010089 300 LNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLP-LNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLH 378 (518)
Q Consensus 300 L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 378 (518)
|++|+++++.... ..+..+..+++|+.|++++|.++...+..+..+++|++|+
T Consensus 152 --------------------------L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 152 --------------------------LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp --------------------------CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred --------------------------CCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 3445554443211 2335566777888888888877776677777788888888
Q ss_pred EecCCCCCCCc--ccccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCC-CcceeeccCC
Q 010089 379 FVNCSNVKDLT--WLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFS-ELELLVISNA 444 (518)
Q Consensus 379 l~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~-~L~~L~l~~~ 444 (518)
++++ .+..++ .+..+++|+.|+++++......+ ..+..+| +|++|+++++
T Consensus 206 L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------------~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 206 MSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK---------------QELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp CTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSS---------------SSCCCCCTTCCEEECTTC
T ss_pred CCCC-ccCccChhhccCcccCCEeECCCCCCcccCH---------------HHHHhhhccCCEEEccCC
Confidence 8877 344443 45667888888888764322211 1445554 7888888775
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=1.6e-18 Score=183.28 Aligned_cols=122 Identities=22% Similarity=0.225 Sum_probs=90.9
Q ss_pred ecCcCCCCCCchh-hhhheeecccccccccChhhhCCCCCCcEEEeecCCCcCccCc-cccCccccCEEecCCCcCCccc
Q 010089 147 RAGVGLTDAPKIE-EWEGTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLHHLDLSSTKVRGLP 224 (518)
Q Consensus 147 ~~~~~~~~~~~~~-~~~~~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~l~~lp 224 (518)
..+..+..+|... ...+.+++++|+++.+++..|.++++|++|+|++| .+..+|. .|.++++|++|+|++|+++.+|
T Consensus 38 c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 38 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp CTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCC
Confidence 3444566666532 23344888999998888877888999999999888 6666654 5788888888888888888877
Q ss_pred h-hhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCCC
Q 010089 225 Q-ELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNH 273 (518)
Q Consensus 225 ~-~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~ 273 (518)
. .+.++++|++|++++|.. ..+|...++++++|++|++++|....
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l----~~l~~~~~~~L~~L~~L~Ls~N~l~~ 162 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNL----ASLENFPIGHLKTLKELNVAHNLIQS 162 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCC----CCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred HHHhcCCCCCCEEECCCCcC----CCCChhhhhcCcccCeeccccCcccc
Confidence 5 468888888888888865 56666557777778887777776543
No 47
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=5.1e-19 Score=179.09 Aligned_cols=238 Identities=18% Similarity=0.185 Sum_probs=170.6
Q ss_pred EEecCcCCCCCCchh-hhhheeecccccccccChhhhCCCCCCcEEEeecCCCcCcc-CccccCccccCEEecCCCcCCc
Q 010089 145 LVRAGVGLTDAPKIE-EWEGTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVRG 222 (518)
Q Consensus 145 ~~~~~~~~~~~~~~~-~~~~~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~ 222 (518)
+...+..+..+|... ...+.+++++|++..+++..|.++++|++|++++| .+..+ |..+.++.+|++|++++|.++.
T Consensus 59 v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 137 (452)
T 3zyi_A 59 VVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTV 137 (452)
T ss_dssp EECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSB
T ss_pred EEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCc
Confidence 334445555666422 22334899999999998888999999999999999 55554 5778999999999999999999
Q ss_pred cchh-hhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccc
Q 010089 223 LPQE-LKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLN 301 (518)
Q Consensus 223 lp~~-i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 301 (518)
+|.. +..+++|++|++++|.. ..+|...+.++++|++|++.+|.... .. ....+..+++|+
T Consensus 138 ~~~~~~~~l~~L~~L~L~~N~l----~~~~~~~~~~l~~L~~L~l~~~~~l~------------~i--~~~~~~~l~~L~ 199 (452)
T 3zyi_A 138 IPSGAFEYLSKLRELWLRNNPI----ESIPSYAFNRVPSLMRLDLGELKKLE------------YI--SEGAFEGLFNLK 199 (452)
T ss_dssp CCTTTSSSCTTCCEEECCSCCC----CEECTTTTTTCTTCCEEECCCCTTCC------------EE--CTTTTTTCTTCC
T ss_pred cChhhhcccCCCCEEECCCCCc----ceeCHhHHhcCCcccEEeCCCCCCcc------------cc--ChhhccCCCCCC
Confidence 8765 78899999999999976 67777668999999999998865421 01 111245566777
Q ss_pred eEEEEEecCccccccccCcchhhccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEec
Q 010089 302 LIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVN 381 (518)
Q Consensus 302 ~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 381 (518)
.++++.+....+..+. . ...|+.|+++++......+..+..+++|+.|++++|.+..+.+..+..+++|+.|+|++
T Consensus 200 ~L~L~~n~l~~~~~~~---~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 275 (452)
T 3zyi_A 200 YLNLGMCNIKDMPNLT---P-LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275 (452)
T ss_dssp EEECTTSCCSSCCCCT---T-CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEECCCCccccccccc---c-cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCC
Confidence 7766654433333222 1 24577888887754333346677788888888888877777777777888888888887
Q ss_pred CCCCCCCc--ccccCCCccEEEEecCc
Q 010089 382 CSNVKDLT--WLVFVPNLKWLQIFNCD 406 (518)
Q Consensus 382 c~~l~~l~--~l~~l~~L~~L~L~~c~ 406 (518)
+ .+..++ .+..+++|+.|+|++++
T Consensus 276 N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 276 N-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp S-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred C-cCCccChHHhccccCCCEEEccCCC
Confidence 7 555554 35667888888887764
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=5.9e-19 Score=177.95 Aligned_cols=237 Identities=18% Similarity=0.212 Sum_probs=169.4
Q ss_pred EEecCcCCCCCCchh-hhhheeecccccccccChhhhCCCCCCcEEEeecCCCcCcc-CccccCccccCEEecCCCcCCc
Q 010089 145 LVRAGVGLTDAPKIE-EWEGTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVRG 222 (518)
Q Consensus 145 ~~~~~~~~~~~~~~~-~~~~~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~ 222 (518)
+...+..+..+|... ...+.+++++|++..+++..|.++++|++|+|++| .+..+ |..+.++++|++|++++|.++.
T Consensus 48 v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~ 126 (440)
T 3zyj_A 48 VICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTT 126 (440)
T ss_dssp EECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSS
T ss_pred EEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCe
Confidence 334455556666432 22234899999999998888999999999999999 55555 4678899999999999999999
Q ss_pred cch-hhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccc
Q 010089 223 LPQ-ELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLN 301 (518)
Q Consensus 223 lp~-~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 301 (518)
+|. .+..+++|++|++++|.. ..+|...+.++++|++|++.+|.... ... ...+..+++|+
T Consensus 127 ~~~~~~~~l~~L~~L~L~~N~i----~~~~~~~~~~l~~L~~L~l~~~~~l~-----------~i~---~~~~~~l~~L~ 188 (440)
T 3zyj_A 127 IPNGAFVYLSKLKELWLRNNPI----ESIPSYAFNRIPSLRRLDLGELKRLS-----------YIS---EGAFEGLSNLR 188 (440)
T ss_dssp CCTTTSCSCSSCCEEECCSCCC----CEECTTTTTTCTTCCEEECCCCTTCC-----------EEC---TTTTTTCSSCC
T ss_pred eCHhHhhccccCceeeCCCCcc----cccCHHHhhhCcccCEeCCCCCCCcc-----------eeC---cchhhcccccC
Confidence 876 588999999999999976 67777668899999999998864421 011 12245566777
Q ss_pred eEEEEEecCccccccccCcchhhccceeecccCCCCCcc-ccccccccccceEEeccCcCccccccCccccccccEEEEe
Q 010089 302 LIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLN-LLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFV 380 (518)
Q Consensus 302 ~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 380 (518)
.++++.+....++.+.. ...|+.|+++++. +..+ +..+..+++|+.|++++|.++.+.+..+..+++|+.|+|+
T Consensus 189 ~L~L~~n~l~~~~~~~~----l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 189 YLNLAMCNLREIPNLTP----LIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263 (440)
T ss_dssp EEECTTSCCSSCCCCTT----CSSCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECT
T ss_pred eecCCCCcCccccccCC----CcccCEEECCCCc-cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECC
Confidence 77666544333332221 2457788888774 3333 4667778888888888887777777777788888888888
Q ss_pred cCCCCCCCc--ccccCCCccEEEEecCc
Q 010089 381 NCSNVKDLT--WLVFVPNLKWLQIFNCD 406 (518)
Q Consensus 381 ~c~~l~~l~--~l~~l~~L~~L~L~~c~ 406 (518)
++ .+..++ .+..+++|+.|+|++++
T Consensus 264 ~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 264 HN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CC-CCCccChhHhccccCCCEEEcCCCC
Confidence 77 555554 35667888888887755
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=2.2e-18 Score=174.48 Aligned_cols=237 Identities=17% Similarity=0.171 Sum_probs=180.5
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCcc-CccccCccccCEEecCCCcCCccc-hhhhcCCCCcEeeccCCc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVRGLP-QELKALVNLRYLNLDYTN 242 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~ 242 (518)
++..+.++..+|.. + .+++++|++++| .+..+ |..+.++++|++|++++|.++.++ ..+.++++|++|++++|.
T Consensus 59 v~c~~~~l~~iP~~-~--~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 59 VVCTRRGLSEVPQG-I--PSNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp EECCSSCCSSCCSC-C--CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCccCCC-C--CCCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 66677788888875 2 378999999999 45544 778999999999999999999865 678999999999999997
Q ss_pred ccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcch
Q 010089 243 EMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKL 322 (518)
Q Consensus 243 ~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l 322 (518)
. ..+|.+.+..+++|++|++++|..... +. ..+..+
T Consensus 135 l----~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------~~--~~~~~l------------------------- 170 (452)
T 3zyi_A 135 L----TVIPSGAFEYLSKLRELWLRNNPIESI-------------PS--YAFNRV------------------------- 170 (452)
T ss_dssp C----SBCCTTTSSSCTTCCEEECCSCCCCEE-------------CT--TTTTTC-------------------------
T ss_pred C----CccChhhhcccCCCCEEECCCCCccee-------------CH--hHHhcC-------------------------
Confidence 6 778877788999999999998876311 00 011222
Q ss_pred hhccceeecccCCCCCccc-cccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCC-c-ccccCCCccE
Q 010089 323 QNITQALHIKDCNSLPLNL-LHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDL-T-WLVFVPNLKW 399 (518)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~-~l~~l~~L~~ 399 (518)
..|+.|++++++.+..++ ..+..+++|+.|++++|.++.+ | .+..+++|+.|+++++. +..+ + .+..+++|+.
T Consensus 171 -~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 246 (452)
T 3zyi_A 171 -PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKK 246 (452)
T ss_dssp -TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSC-CSEECGGGGTTCTTCCE
T ss_pred -CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCc-CcccCcccccCccCCCE
Confidence 234566666666566555 4577889999999999988864 3 47789999999999984 4443 3 5788999999
Q ss_pred EEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCC-CCCCCCcceEeccCCC
Q 010089 400 LQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRD-PLPFPHLERIGISECP 469 (518)
Q Consensus 400 L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~i~~C~ 469 (518)
|+++++. +..+.. ..+..+++|+.|+|+++ .+..++.. ...+++|+.|+++++|
T Consensus 247 L~L~~n~-l~~~~~--------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 247 LWVMNSQ-VSLIER--------------NAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EECTTSC-CCEECT--------------TTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred EEeCCCc-CceECH--------------HHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 9999865 333322 25667899999999986 77777654 4678999999998864
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=3.8e-18 Score=172.05 Aligned_cols=237 Identities=19% Similarity=0.224 Sum_probs=180.2
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCcc-CccccCccccCEEecCCCcCCccc-hhhhcCCCCcEeeccCCc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVRGLP-QELKALVNLRYLNLDYTN 242 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~ 242 (518)
++..+.++..+|..+ .+++++|+|++| .+..+ +..+.++++|++|++++|.++.++ ..+.++++|++|++++|.
T Consensus 48 v~c~~~~l~~iP~~~---~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 48 VICVRKNLREVPDGI---STNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EECCSCCCSSCCSCC---CTTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEeCCCCcCcCCCCC---CCCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 667778888888763 378999999999 55555 578999999999999999999866 578999999999999997
Q ss_pred ccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcch
Q 010089 243 EMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKL 322 (518)
Q Consensus 243 ~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l 322 (518)
. ..+|.+.+..+++|++|++.+|..... .. ..+..+
T Consensus 124 l----~~~~~~~~~~l~~L~~L~L~~N~i~~~------------~~---~~~~~l------------------------- 159 (440)
T 3zyj_A 124 L----TTIPNGAFVYLSKLKELWLRNNPIESI------------PS---YAFNRI------------------------- 159 (440)
T ss_dssp C----SSCCTTTSCSCSSCCEEECCSCCCCEE------------CT---TTTTTC-------------------------
T ss_pred C----CeeCHhHhhccccCceeeCCCCccccc------------CH---HHhhhC-------------------------
Confidence 6 788876689999999999998876311 00 011122
Q ss_pred hhccceeecccCCCCCccc-cccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCC-c-ccccCCCccE
Q 010089 323 QNITQALHIKDCNSLPLNL-LHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDL-T-WLVFVPNLKW 399 (518)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~-~l~~l~~L~~ 399 (518)
..|+.|+++++..+..++ ..+..+++|+.|++++|.++.+ | .+..+++|+.|+++++ .+..+ + .+..+++|+.
T Consensus 160 -~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 235 (440)
T 3zyj_A 160 -PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQK 235 (440)
T ss_dssp -TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCE
T ss_pred -cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-ccCCCcccCEEECCCC-ccCccChhhhccCccCCE
Confidence 235566666665555555 4677889999999999988853 3 4778899999999998 45544 3 5778999999
Q ss_pred EEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCC-CCCCCCcceEeccCCC
Q 010089 400 LQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRD-PLPFPHLERIGISECP 469 (518)
Q Consensus 400 L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~i~~C~ 469 (518)
|+++++. +..+.. ..+..+++|+.|+|+++ .+..++.. ...+++|+.|+++++|
T Consensus 236 L~L~~n~-l~~~~~--------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 236 LWMIQSQ-IQVIER--------------NAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EECTTCC-CCEECT--------------TSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EECCCCc-eeEECh--------------hhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 9999864 444322 25667899999999986 77777654 4668999999998754
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=5.2e-19 Score=170.20 Aligned_cols=259 Identities=15% Similarity=0.098 Sum_probs=135.2
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCcc-CccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNE 243 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 243 (518)
.++..+.+...+...+..+++|++|++++| .+..+ |..++.+++|++|++++|.++.+++ +..+++|++|++++|..
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcc
Confidence 445556666666666777778888888888 44444 4577888888888888888777665 77888888888888764
Q ss_pred cccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchh
Q 010089 244 MCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQ 323 (518)
Q Consensus 244 l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~ 323 (518)
..++. .++|++|++.+|..... + ...+++|+.++++.+....... ......
T Consensus 93 ----~~l~~-----~~~L~~L~l~~n~l~~~-------------~-----~~~~~~L~~L~l~~N~l~~~~~--~~~~~l 143 (317)
T 3o53_A 93 ----QELLV-----GPSIETLHAANNNISRV-------------S-----CSRGQGKKNIYLANNKITMLRD--LDEGCR 143 (317)
T ss_dssp ----EEEEE-----CTTCCEEECCSSCCSEE-------------E-----ECCCSSCEEEECCSSCCCSGGG--BCTGGG
T ss_pred ----ccccC-----CCCcCEEECCCCccCCc-------------C-----ccccCCCCEEECCCCCCCCccc--hhhhcc
Confidence 44442 37788888877765221 0 0112333333333222111100 000112
Q ss_pred hccceeecccCCCCCcccccc-ccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCC-cccccCCCccEEE
Q 010089 324 NITQALHIKDCNSLPLNLLHL-ANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDL-TWLVFVPNLKWLQ 401 (518)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~l~~l~~L~~L~ 401 (518)
..|++|+++++.-....+..+ ..+++|+.|++++|.++.+ +. ...+++|++|+++++ .+..+ +.+..+++|+.|+
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~ 220 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWIS 220 (317)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEE
T ss_pred CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCC-cCCcchhhhcccCcccEEE
Confidence 334555555543211112222 2445555566555555543 11 223555555555555 23333 2344555555555
Q ss_pred EecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccc-cccCCCCCCCCCcceEeccCCCCCcC
Q 010089 402 IFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNL-KRIYRDPLPFPHLERIGISECPKLKK 473 (518)
Q Consensus 402 L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l-~~l~~~~~~~~~L~~L~i~~C~~L~~ 473 (518)
++++. ++.++. .+..+++|+.|++++++-- ..++.....++.|+.+++.+|+.++.
T Consensus 221 L~~N~-l~~l~~---------------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 221 LRNNK-LVLIEK---------------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CTTSC-CCEECT---------------TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred CcCCc-ccchhh---------------HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 55542 222221 3344555555555554322 12333334455555555555544444
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=3.9e-19 Score=170.61 Aligned_cols=232 Identities=14% Similarity=0.097 Sum_probs=176.3
Q ss_pred CCCcEEEeecCCCcC--ccCccccCccccCEEecCC-CcCC-ccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCC
Q 010089 184 PSLRVLNLSVNHYLT--ELPVGISSLVSLHHLDLSS-TKVR-GLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFS 259 (518)
Q Consensus 184 ~~Lr~L~L~~~~~~~--~lp~~i~~L~~L~~L~l~~-~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~ 259 (518)
.+++.|+++++...+ .+|..++++++|++|++++ +.+. .+|..++++++|++|++++|... ..+|.. +.+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~---~~~p~~-~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS---GAIPDF-LSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE---EECCGG-GGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC---CcCCHH-HhCCC
Confidence 579999999995444 7999999999999999995 7776 59999999999999999999874 577876 89999
Q ss_pred CCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhhccceeecccCCCCCc
Q 010089 260 KLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPL 339 (518)
Q Consensus 260 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~ 339 (518)
+|++|++++|.... ..+ ..+..+++ |++|+++++.....
T Consensus 126 ~L~~L~Ls~N~l~~------------~~p---~~~~~l~~--------------------------L~~L~L~~N~l~~~ 164 (313)
T 1ogq_A 126 TLVTLDFSYNALSG------------TLP---PSISSLPN--------------------------LVGITFDGNRISGA 164 (313)
T ss_dssp TCCEEECCSSEEES------------CCC---GGGGGCTT--------------------------CCEEECCSSCCEEE
T ss_pred CCCEEeCCCCccCC------------cCC---hHHhcCCC--------------------------CCeEECcCCcccCc
Confidence 99999999886521 111 12333333 44555555543224
Q ss_pred ccccccccc-ccceEEeccCcCccccccCccccccccEEEEecCCCCCCCc-ccccCCCccEEEEecCcchhhhhcccch
Q 010089 340 NLLHLANME-HLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT-WLVFVPNLKWLQIFNCDDMEEIISVEKF 417 (518)
Q Consensus 340 ~~~~l~~l~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~ 417 (518)
.+..+..++ +|+.|++++|.+....|..+..+. |+.|+++++.....++ .+..+++|+.|+++++.....++
T Consensus 165 ~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----- 238 (313)
T 1ogq_A 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG----- 238 (313)
T ss_dssp CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-----
T ss_pred CCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC-----
Confidence 556677777 999999999988766788888887 9999999984333344 57789999999999976422221
Q ss_pred hccccccccCCCCccCCCcceeeccCCccccccCCCCCCCCCcceEeccCCCCCcCCCCC
Q 010089 418 EKLGEVSEMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGISECPKLKKLPLN 477 (518)
Q Consensus 418 ~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~ 477 (518)
....+++|++|+++++.--..+|..+..+++|+.|++++|+--..+|..
T Consensus 239 -----------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 239 -----------KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp -----------GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred -----------cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 3457899999999997433377877888999999999998433367765
No 53
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.78 E-value=2.3e-20 Score=192.85 Aligned_cols=126 Identities=17% Similarity=0.192 Sum_probs=99.2
Q ss_pred CcccCCCCchHHHHHHHHhcCCCChhHHHHHHHHHhccCCcccchHHHHHHHHhhhcCCCCchhhhhHhh----------
Q 010089 1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSLPNDELRSCLL---------- 70 (518)
Q Consensus 1 I~~~c~GlPLai~~ig~~L~~~~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~~sY~~L~~~~lk~cfl---------- 70 (518)
|+++|+|+||||+++|+.|+.+ .|+.+ +.+.+..+... .+++.+++++||++||. ++|.||+
T Consensus 322 I~~~c~GlPLAl~~~g~~l~~~----~w~~~-~~l~~~l~~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~ 393 (549)
T 2a5y_B 322 TIELSSGNPATLMMFFKSCEPK----TFEKM-AQLNNKLESRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSAL 393 (549)
T ss_dssp HHHHHTTCHHHHHHHHTTCCSS----SHHHH-HHHHHHHHHHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHT
T ss_pred HHHHhCCChHHHHHHHHHhccc----hHHHH-HHhHHHhhccc--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHh
Confidence 5789999999999999999874 36554 45554433211 12688999999999999 9999999
Q ss_pred -hhcccCCCCccChHHHHHHHHHh--CCCccc--------chhHHHHHHHHhcccccCC---Cc-eecchHHHHHHHHHH
Q 010089 71 -YCCLFPEDSEIRKTDLIVYWESE--GLLDSI--------GGWDVLGALVRACLLEEGG---DH-VKMHDMIRDMALWIA 135 (518)
Q Consensus 71 -~~a~fp~~~~i~~~~Li~~Wia~--g~i~~~--------~~~~~~~~L~~~sli~~~~---~~-~~mHdl~~dl~~~i~ 135 (518)
|||+||+|+.|+ +++|+|+ ||+.+. +++ |+++|+++||++..+ .. |+|||+||++|++++
T Consensus 394 ~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~ 468 (549)
T 2a5y_B 394 AFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVV 468 (549)
T ss_dssp TGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTS
T ss_pred hheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHH
Confidence 999999999999 8999999 998643 344 999999999999743 23 999999999999887
Q ss_pred hhcc
Q 010089 136 NEIE 139 (518)
Q Consensus 136 ~~~~ 139 (518)
.++.
T Consensus 469 ~~~~ 472 (549)
T 2a5y_B 469 DAQT 472 (549)
T ss_dssp CTHH
T ss_pred HHHH
Confidence 6543
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=5.5e-18 Score=165.72 Aligned_cols=261 Identities=22% Similarity=0.213 Sum_probs=188.8
Q ss_pred ecCcCCCCCCchh-hhhheeecccccccccChhhhCCCCCCcEEEeecCCCcCcc-CccccCccccCEEecCCCcCCccc
Q 010089 147 RAGVGLTDAPKIE-EWEGTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVRGLP 224 (518)
Q Consensus 147 ~~~~~~~~~~~~~-~~~~~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~lp 224 (518)
..+..+..+|... ..-+.+++++|++..+++..|.++++|++|++++| .+..+ |..++++++|++|++++|.++.+|
T Consensus 38 ~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 116 (353)
T 2z80_A 38 GSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116 (353)
T ss_dssp CCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSSCC
T ss_pred CCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCcCC
Confidence 3445556666522 22233999999999999977999999999999999 55555 567999999999999999999998
Q ss_pred hh-hhcCCCCcEeeccCCcccccccCCch-hhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccce
Q 010089 225 QE-LKALVNLRYLNLDYTNEMCKMCKIPE-QLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNL 302 (518)
Q Consensus 225 ~~-i~~L~~L~~L~l~~~~~l~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 302 (518)
.. ++++++|++|++++|.. ..+|. +.+..+++|++|++.+|.... ... ...+..+++|+.
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l----~~l~~~~~~~~l~~L~~L~l~~n~~~~-----------~~~---~~~~~~l~~L~~ 178 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGNPY----KTLGETSLFSHLTKLQILRVGNMDTFT-----------KIQ---RKDFAGLTFLEE 178 (353)
T ss_dssp HHHHTTCTTCSEEECTTCCC----SSSCSSCSCTTCTTCCEEEEEESSSCC-----------EEC---TTTTTTCCEEEE
T ss_pred HhHhCCCccCCEEECCCCCC----cccCchhhhccCCCCcEEECCCCcccc-----------ccC---HHHccCCCCCCE
Confidence 87 89999999999999976 67776 458899999999999984211 011 123556778888
Q ss_pred EEEEEecCccccccccCcchhhccceeecccCCCCCccc-cccccccccceEEeccCcCccccccCc---cccccccEEE
Q 010089 303 IALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNL-LHLANMEHLQLFSIWDSNLEDWNVDCA---GEVQKMLKLH 378 (518)
Q Consensus 303 l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~---~~l~~L~~L~ 378 (518)
++++.+..... .+........|++|+++++. +...+ ..+..+++|+.|++++|.++...+..+ .....++.++
T Consensus 179 L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~ 255 (353)
T 2z80_A 179 LEIDASDLQSY--EPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255 (353)
T ss_dssp EEEEETTCCEE--CTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEE
T ss_pred EECCCCCcCcc--CHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccc
Confidence 88876553322 11111223568999999876 34444 334568999999999998776544333 2466788888
Q ss_pred EecCCCCCC-----Cc-ccccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCc
Q 010089 379 FVNCSNVKD-----LT-WLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNAS 445 (518)
Q Consensus 379 l~~c~~l~~-----l~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 445 (518)
+.++. +.. +| ++..+++|+.|+++++. ++.++. .....+++|++|++++++
T Consensus 256 L~~~~-l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~--------------~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 256 FRNVK-ITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPD--------------GIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp EESCB-CCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCT--------------TTTTTCTTCCEEECCSSC
T ss_pred ccccc-ccCcchhhhHHHHhcccCCCEEECCCCC-CCccCH--------------HHHhcCCCCCEEEeeCCC
Confidence 88773 322 33 56789999999999874 444443 124678999999999864
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=7.8e-18 Score=159.48 Aligned_cols=216 Identities=13% Similarity=0.140 Sum_probs=136.7
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccC-ccccCccccCEEecCCCcCCcc-chhhhcCCCCcEeeccCCc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDLSSTKVRGL-PQELKALVNLRYLNLDYTN 242 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~ 242 (518)
++..++++..+|.. ..++|++|++++| .+..+| ..+..+++|++|++++|.++.+ |..+.++++|++|++++|.
T Consensus 16 ~~c~~~~l~~ip~~---~~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 16 TSCPQQGLQAVPVG---IPAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EECCSSCCSSCCTT---CCTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEcCcCCcccCCcC---CCCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 66677777777754 2468888999888 555555 5688888899999988888886 6678888889999998886
Q ss_pred ccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcch
Q 010089 243 EMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKL 322 (518)
Q Consensus 243 ~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l 322 (518)
.+ ..++...+..+++|++|++.+|..... .+ ..+..+++
T Consensus 92 ~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~---~~~~~l~~----------------------- 130 (285)
T 1ozn_A 92 QL---RSVDPATFHGLGRLHTLHLDRCGLQEL------------GP---GLFRGLAA----------------------- 130 (285)
T ss_dssp TC---CCCCTTTTTTCTTCCEEECTTSCCCCC------------CT---TTTTTCTT-----------------------
T ss_pred Cc---cccCHHHhcCCcCCCEEECCCCcCCEE------------CH---hHhhCCcC-----------------------
Confidence 44 666544578888888888888765320 00 11122222
Q ss_pred hhccceeecccCCCCCccc-cccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCc-ccccCCCccEE
Q 010089 323 QNITQALHIKDCNSLPLNL-LHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT-WLVFVPNLKWL 400 (518)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L 400 (518)
|++|+++++. +..++ ..+..+++|+.|++++|.++.+.+..+..+++|+.|+++++.-....+ .+..+++|+.|
T Consensus 131 ---L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 206 (285)
T 1ozn_A 131 ---LQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206 (285)
T ss_dssp ---CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred ---CCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEe
Confidence 3334444432 12222 345666777777777777766555556667777777777763222212 45566777777
Q ss_pred EEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCC
Q 010089 401 QIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNA 444 (518)
Q Consensus 401 ~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~ 444 (518)
+++++. +..++. ..+..+++|+.|+++++
T Consensus 207 ~l~~n~-l~~~~~--------------~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 207 YLFANN-LSALPT--------------EALAPLRALQYLRLNDN 235 (285)
T ss_dssp ECCSSC-CSCCCH--------------HHHTTCTTCCEEECCSS
T ss_pred eCCCCc-CCcCCH--------------HHcccCcccCEEeccCC
Confidence 777653 332221 02345666666666664
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=3.2e-18 Score=174.33 Aligned_cols=78 Identities=22% Similarity=0.254 Sum_probs=50.8
Q ss_pred CCCCcEEEeecCCCcCcc-CccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCC
Q 010089 183 LPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKL 261 (518)
Q Consensus 183 l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L 261 (518)
+++|++|++++| .+..+ |..++.+++|++|++++|.++.+++ +..+++|++|++++|.. ..+|. .++|
T Consensus 33 ~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l----~~l~~-----~~~L 101 (487)
T 3oja_A 33 AWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV----QELLV-----GPSI 101 (487)
T ss_dssp GGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEE----EEEEE-----CTTC
T ss_pred CCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcC----CCCCC-----CCCc
Confidence 346777777777 34433 4567777777777777777766554 67777777777777754 44443 2667
Q ss_pred cEEeccccCC
Q 010089 262 QVLRMLHCGS 271 (518)
Q Consensus 262 ~~L~l~~~~~ 271 (518)
++|++.+|..
T Consensus 102 ~~L~L~~N~l 111 (487)
T 3oja_A 102 ETLHAANNNI 111 (487)
T ss_dssp CEEECCSSCC
T ss_pred CEEECcCCcC
Confidence 7777776655
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=6.4e-19 Score=169.54 Aligned_cols=260 Identities=16% Similarity=0.138 Sum_probs=192.8
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCccc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEM 244 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l 244 (518)
+++++|++..+++..|.++++|++|++++| .+...+. +..+++|++|++++|.++++|. .++|++|++++|..
T Consensus 39 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l- 111 (317)
T 3o53_A 39 LDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNI- 111 (317)
T ss_dssp EECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCC-
T ss_pred EECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEECCCCcc-
Confidence 899999999999888999999999999999 5665554 9999999999999999988774 48999999999976
Q ss_pred ccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhh
Q 010089 245 CKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQN 324 (518)
Q Consensus 245 ~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~ 324 (518)
..++. ..+++|++|++.+|..... .+ ..+..+++|+.++++.+...... ...+.....
T Consensus 112 ---~~~~~---~~~~~L~~L~l~~N~l~~~------------~~---~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~~l~ 169 (317)
T 3o53_A 112 ---SRVSC---SRGQGKKNIYLANNKITML------------RD---LDEGCRSRVQYLDLKLNEIDTVN-FAELAASSD 169 (317)
T ss_dssp ---SEEEE---CCCSSCEEEECCSSCCCSG------------GG---BCTGGGSSEEEEECTTSCCCEEE-GGGGGGGTT
T ss_pred ---CCcCc---cccCCCCEEECCCCCCCCc------------cc---hhhhccCCCCEEECCCCCCCccc-HHHHhhccC
Confidence 55554 3578999999999987431 11 12345667777766644332211 111112235
Q ss_pred ccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCc-ccccCCCccEEEEe
Q 010089 325 ITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT-WLVFVPNLKWLQIF 403 (518)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~L~ 403 (518)
.|++|+++++. +..++ ....+++|+.|++++|.++.+.+ .+..+++|+.|+++++ .+..+| .+..+++|+.|+++
T Consensus 170 ~L~~L~L~~N~-l~~~~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 170 TLEHLNLQYNF-IYDVK-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp TCCEEECTTSC-CCEEE-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECT
T ss_pred cCCEEECCCCc-Ccccc-cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEcc
Confidence 68999999985 44443 33458999999999998887544 4888999999999998 555665 57789999999999
Q ss_pred cCcch-hhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCCCCCCCCcceEeccCCCCCc
Q 010089 404 NCDDM-EEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGISECPKLK 472 (518)
Q Consensus 404 ~c~~l-~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~C~~L~ 472 (518)
+++.. ..++. ....+++|+.|.+.+++.++.........+.+....-.+|..+.
T Consensus 246 ~N~~~~~~~~~---------------~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 246 GNGFHCGTLRD---------------FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300 (317)
T ss_dssp TCCCBHHHHHH---------------HHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCT
T ss_pred CCCccCcCHHH---------------HHhccccceEEECCCchhccCCchhccCCCceecccceeeccCC
Confidence 98755 23322 45578899999999888777665444445566666666676665
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.74 E-value=7.6e-18 Score=175.88 Aligned_cols=257 Identities=15% Similarity=0.129 Sum_probs=144.3
Q ss_pred cccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccCC
Q 010089 171 HIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCKI 250 (518)
Q Consensus 171 ~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~l 250 (518)
.+....+..+..+++|++|++++| .+..+|..+..+ +|++|++++|.+..+|. ..+++|++|++++|... ...
T Consensus 269 ~~~~~~~~~~~~l~~L~~L~l~~~-~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~---~~~ 341 (570)
T 2z63_A 269 YYLDDIIDLFNCLTNVSSFSLVSV-TIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGG---NAF 341 (570)
T ss_dssp EEESCSTTTTGGGTTCSEEEEESC-EECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSC---CBC
T ss_pred hhhhhchhhhcCcCcccEEEecCc-cchhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCccc---ccc
Confidence 344444455777888888888888 667788888887 88888888888888876 57788888888887653 222
Q ss_pred chhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhhccceee
Q 010089 251 PEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALH 330 (518)
Q Consensus 251 p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~ 330 (518)
+ ...+++|++|++++|.... .......+..+++|+.++++.+....... .......|+.|+
T Consensus 342 ~---~~~~~~L~~L~l~~n~l~~-------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~l~~L~~L~ 402 (570)
T 2z63_A 342 S---EVDLPSLEFLDLSRNGLSF-------------KGCCSQSDFGTTSLKYLDLSFNGVITMSS---NFLGLEQLEHLD 402 (570)
T ss_dssp C---CCBCTTCCEEECCSSCCBE-------------EEEEEHHHHTCSCCCEEECCSCSEEEEEE---EEETCTTCCEEE
T ss_pred c---cccCCCCCEEeCcCCccCc-------------cccccccccccCccCEEECCCCccccccc---cccccCCCCEEE
Confidence 2 2677888888888776521 11112233445555555544332111110 011123455666
Q ss_pred cccCCCCCccc-cccccccccceEEeccCcCccccccCccccccccEEEEecCCCC-CCCc-ccccCCCccEEEEecCcc
Q 010089 331 IKDCNSLPLNL-LHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNV-KDLT-WLVFVPNLKWLQIFNCDD 407 (518)
Q Consensus 331 l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l-~~l~-~l~~l~~L~~L~L~~c~~ 407 (518)
++++......+ ..+..+++|+.|++++|.+....+..+..+++|++|++++|... ..+| .+..+++|+.|++++|..
T Consensus 403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l 482 (570)
T 2z63_A 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482 (570)
T ss_dssp CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred ccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcc
Confidence 66543211111 24455566666666666555545555555666666666665322 1222 455566666666666532
Q ss_pred hhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCC-CCCCCCCcceEeccCCC
Q 010089 408 MEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYR-DPLPFPHLERIGISECP 469 (518)
Q Consensus 408 l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~i~~C~ 469 (518)
..+. +..+..+++|++|+++++ .+..++. ....+++|+.|++++++
T Consensus 483 -~~~~--------------~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 483 -EQLS--------------PTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp -CEEC--------------TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -ccCC--------------hhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 2211 113445566666666664 4444433 23455666666666653
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=3.1e-17 Score=155.34 Aligned_cols=215 Identities=18% Similarity=0.240 Sum_probs=164.7
Q ss_pred EEecCcCCCCCCchh-hhhheeecccccccccChhhhCCCCCCcEEEeecCCCcCcc-CccccCccccCEEecCCCc-CC
Q 010089 145 LVRAGVGLTDAPKIE-EWEGTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTK-VR 221 (518)
Q Consensus 145 ~~~~~~~~~~~~~~~-~~~~~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~-l~ 221 (518)
+...+..+..+|... ...+.+++++|++..+++..|..+++|++|++++| .+..+ |..+..+++|++|++++|. ++
T Consensus 16 ~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~ 94 (285)
T 1ozn_A 16 TSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLR 94 (285)
T ss_dssp EECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred EEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCcc
Confidence 334445555565422 22334999999999999888999999999999999 55555 7889999999999999996 88
Q ss_pred cc-chhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhccccc
Q 010089 222 GL-PQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQL 300 (518)
Q Consensus 222 ~l-p~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 300 (518)
.+ |..+..+++|++|++++|.. ..++...+.++++|++|++.+|..... .. ..+..+++
T Consensus 95 ~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~---~~~~~l~~- 154 (285)
T 1ozn_A 95 SVDPATFHGLGRLHTLHLDRCGL----QELGPGLFRGLAALQYLYLQDNALQAL------------PD---DTFRDLGN- 154 (285)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCC----CCCCTTTTTTCTTCCEEECCSSCCCCC------------CT---TTTTTCTT-
T ss_pred ccCHHHhcCCcCCCEEECCCCcC----CEECHhHhhCCcCCCEEECCCCccccc------------CH---hHhccCCC-
Confidence 87 67899999999999999976 566555589999999999999876321 00 11222333
Q ss_pred ceEEEEEecCccccccccCcchhhccceeecccCCCCCccc-cccccccccceEEeccCcCccccccCccccccccEEEE
Q 010089 301 NLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNL-LHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHF 379 (518)
Q Consensus 301 ~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 379 (518)
|++|+++++. +..++ ..+..+++|+.|++++|.+....+.++..+++|+.|++
T Consensus 155 -------------------------L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 155 -------------------------LTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208 (285)
T ss_dssp -------------------------CCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred -------------------------ccEEECCCCc-ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeC
Confidence 4555665553 34443 35778899999999999888877888999999999999
Q ss_pred ecCCCCCCCc--ccccCCCccEEEEecCcc
Q 010089 380 VNCSNVKDLT--WLVFVPNLKWLQIFNCDD 407 (518)
Q Consensus 380 ~~c~~l~~l~--~l~~l~~L~~L~L~~c~~ 407 (518)
+++ .+..++ .+..+++|+.|++++++.
T Consensus 209 ~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 209 FAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred CCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 998 555565 478899999999998764
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=2.5e-17 Score=171.35 Aligned_cols=251 Identities=20% Similarity=0.155 Sum_probs=174.0
Q ss_pred eEEecCcCCCCCCchhh-hhheeecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCc
Q 010089 144 FLVRAGVGLTDAPKIEE-WEGTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRG 222 (518)
Q Consensus 144 ~~~~~~~~~~~~~~~~~-~~~~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~ 222 (518)
.+...+..+..+|.... .-..+++.+|++..+|. .+++|++|++++| .++.+|. .+++|++|++++|.++.
T Consensus 44 ~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~l~~ 115 (622)
T 3g06_A 44 VLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSNPLTH 115 (622)
T ss_dssp EEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC----CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSCCCCC
T ss_pred EEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCCcCCC
Confidence 34444555556654222 22338888888888776 4688888999888 6777886 67888899998888888
Q ss_pred cchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccce
Q 010089 223 LPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNL 302 (518)
Q Consensus 223 lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 302 (518)
+|. .+++|++|++++|.. ..+|.. +++|++|++++|..... +. .+.+|+.
T Consensus 116 l~~---~l~~L~~L~L~~N~l----~~lp~~----l~~L~~L~Ls~N~l~~l-------------~~------~~~~L~~ 165 (622)
T 3g06_A 116 LPA---LPSGLCKLWIFGNQL----TSLPVL----PPGLQELSVSDNQLASL-------------PA------LPSELCK 165 (622)
T ss_dssp CCC---CCTTCCEEECCSSCC----SCCCCC----CTTCCEEECCSSCCSCC-------------CC------CCTTCCE
T ss_pred CCC---CCCCcCEEECCCCCC----CcCCCC----CCCCCEEECcCCcCCCc-------------CC------ccCCCCE
Confidence 887 567888888888865 667763 47888998888876321 11 1234455
Q ss_pred EEEEEecCccccccccCcchhhccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecC
Q 010089 303 IALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNC 382 (518)
Q Consensus 303 l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c 382 (518)
+.+..+....++ .....|+.|+++++. +..++. .+++|+.|++++|.++.+ |. .+++|+.|++++|
T Consensus 166 L~L~~N~l~~l~------~~~~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~l~~l-~~---~~~~L~~L~Ls~N 231 (622)
T 3g06_A 166 LWAYNNQLTSLP------MLPSGLQELSVSDNQ-LASLPT---LPSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGN 231 (622)
T ss_dssp EECCSSCCSCCC------CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSS
T ss_pred EECCCCCCCCCc------ccCCCCcEEECCCCC-CCCCCC---ccchhhEEECcCCccccc-CC---CCCCCCEEEccCC
Confidence 544433322221 334567888888864 344432 246788888888877753 32 3578889999887
Q ss_pred CCCCCCcccccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCCCCCCCCcce
Q 010089 383 SNVKDLTWLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLER 462 (518)
Q Consensus 383 ~~l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~ 462 (518)
.+..+| ..+++|+.|+++++ .+..++ . .+++|+.|++++| .+..+|..+..+++|+.
T Consensus 232 -~L~~lp--~~l~~L~~L~Ls~N-~L~~lp----------------~--~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~ 288 (622)
T 3g06_A 232 -RLTSLP--VLPSELKELMVSGN-RLTSLP----------------M--LPSGLLSLSVYRN-QLTRLPESLIHLSSETT 288 (622)
T ss_dssp -CCSCCC--CCCTTCCEEECCSS-CCSCCC----------------C--CCTTCCEEECCSS-CCCSCCGGGGGSCTTCE
T ss_pred -ccCcCC--CCCCcCcEEECCCC-CCCcCC----------------c--ccccCcEEeCCCC-CCCcCCHHHhhccccCE
Confidence 666666 56788999999886 344332 1 5688999999986 77888887888899999
Q ss_pred EeccCCC
Q 010089 463 IGISECP 469 (518)
Q Consensus 463 L~i~~C~ 469 (518)
|++++++
T Consensus 289 L~L~~N~ 295 (622)
T 3g06_A 289 VNLEGNP 295 (622)
T ss_dssp EECCSCC
T ss_pred EEecCCC
Confidence 9998875
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.73 E-value=5.6e-17 Score=163.50 Aligned_cols=168 Identities=19% Similarity=0.267 Sum_probs=85.3
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCccc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEM 244 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l 244 (518)
+++++|++..++.. .++|++|++++| .+..+| .++++++|++|++++|.++.+|..+ .+|++|++++|..
T Consensus 116 L~l~~n~l~~l~~~----~~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l- 185 (454)
T 1jl5_A 116 LLVDNNNLKALSDL----PPLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQL- 185 (454)
T ss_dssp EECCSSCCSCCCSC----CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCC-
T ss_pred EECCCCccCcccCC----CCCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcC-
Confidence 55555555554431 146666666666 455566 4666666666666666666665432 3666666666644
Q ss_pred ccccCCchhhhcCCCCCcEEeccccCCCCccccc--------cCCCCcchhhhhHHHhhcccccceEEEEEecCcccccc
Q 010089 245 CKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAE--------EGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENF 316 (518)
Q Consensus 245 ~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l 316 (518)
..+|. ++++++|++|++.+|.....+... ..+... .+..+..+++|+.++++.+....++
T Consensus 186 ---~~l~~--~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~-----~lp~~~~l~~L~~L~l~~N~l~~l~-- 253 (454)
T 1jl5_A 186 ---EELPE--LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE-----ELPELQNLPFLTTIYADNNLLKTLP-- 253 (454)
T ss_dssp ---SSCCC--CTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-----SCCCCTTCTTCCEEECCSSCCSSCC--
T ss_pred ---CcCcc--ccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC-----cccccCCCCCCCEEECCCCcCCccc--
Confidence 44553 566666666666666543322110 000000 1112445666666666543322211
Q ss_pred ccCcchhhccceeecccCCCCCccccccccccccceEEeccCcCcc
Q 010089 317 LKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED 362 (518)
Q Consensus 317 ~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 362 (518)
.....++.|+++++. +..++.. +++|+.|++++|.++.
T Consensus 254 ----~~~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 254 ----DLPPSLEALNVRDNY-LTDLPEL---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp ----SCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSE
T ss_pred ----ccccccCEEECCCCc-ccccCcc---cCcCCEEECcCCccCc
Confidence 122456667766653 2333221 2556666666665553
No 62
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.73 E-value=7.1e-18 Score=170.07 Aligned_cols=212 Identities=16% Similarity=0.119 Sum_probs=116.3
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCcccc-------------CEEecCCCcCCccchhhhcCC
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSL-------------HHLDLSSTKVRGLPQELKALV 231 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L-------------~~L~l~~~~l~~lp~~i~~L~ 231 (518)
+.+++|++..+|+. ++++++|++|++++|...+.+|.+++++.+| ++|++++|.++++|.. .+
T Consensus 16 L~l~~n~l~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~---~~ 91 (454)
T 1jl5_A 16 PLRHSSNLTEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL---PP 91 (454)
T ss_dssp -------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC---CT
T ss_pred hhcccCchhhCChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC---cC
Confidence 55666666666655 6667777777776664444666666666554 6666666666666552 24
Q ss_pred CCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCCCccccc--------cCCCCcchhhhhHHHhhcccccceE
Q 010089 232 NLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAE--------EGNVLSDDAESLMKEIHCLEQLNLI 303 (518)
Q Consensus 232 ~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~L~~L~~l 303 (518)
+|++|++++|.. ..+|.. +++|++|++++|.....+... ..+... .. ..+..+++|+.+
T Consensus 92 ~L~~L~l~~n~l----~~lp~~----~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~-~l----p~~~~l~~L~~L 158 (454)
T 1jl5_A 92 HLESLVASCNSL----TELPEL----PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-KL----PELQNSSFLKII 158 (454)
T ss_dssp TCSEEECCSSCC----SSCCCC----CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS-SC----CCCTTCTTCCEE
T ss_pred CCCEEEccCCcC----Cccccc----cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCC-CC----cccCCCCCCCEE
Confidence 566666666544 334431 245555555555443321110 011111 11 136677778877
Q ss_pred EEEEecCccccccccCcchhhccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCC
Q 010089 304 ALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCS 383 (518)
Q Consensus 304 ~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~ 383 (518)
+++.+....++ .....|++|+++++. +..++ .+..+++|+.|++++|.++.+ |.. .++|++|++++|
T Consensus 159 ~l~~N~l~~lp------~~~~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~~n- 225 (454)
T 1jl5_A 159 DVDNNSLKKLP------DLPPSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAGNN- 225 (454)
T ss_dssp ECCSSCCSCCC------CCCTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECCSS-
T ss_pred ECCCCcCcccC------CCcccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCcCCcC-CCC---cCcccEEECcCC-
Confidence 77655433222 222468888988874 44454 577888899999988877652 322 357888888887
Q ss_pred CCCCCcccccCCCccEEEEecCc
Q 010089 384 NVKDLTWLVFVPNLKWLQIFNCD 406 (518)
Q Consensus 384 ~l~~l~~l~~l~~L~~L~L~~c~ 406 (518)
.+..+|.+..+++|++|+++++.
T Consensus 226 ~l~~lp~~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 226 ILEELPELQNLPFLTTIYADNNL 248 (454)
T ss_dssp CCSSCCCCTTCTTCCEEECCSSC
T ss_pred cCCcccccCCCCCCCEEECCCCc
Confidence 55577777788888888888754
No 63
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=4.8e-17 Score=149.73 Aligned_cols=92 Identities=20% Similarity=0.316 Sum_probs=65.1
Q ss_pred cccccChhhhCCCCCCcEEEeecCCCcCccCc-cccCccccCEEecCCCc-CCccch-hhhcCCCCcEeeccC-Cccccc
Q 010089 171 HIEEITESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLHHLDLSSTK-VRGLPQ-ELKALVNLRYLNLDY-TNEMCK 246 (518)
Q Consensus 171 ~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~-l~~lp~-~i~~L~~L~~L~l~~-~~~l~~ 246 (518)
++..+|. +. .+|++|++++| .++.+|. .+..+++|++|++++|. ++.+|. .+.++++|++|++++ +..
T Consensus 22 ~l~~ip~--~~--~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l--- 93 (239)
T 2xwt_C 22 DIQRIPS--LP--PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL--- 93 (239)
T ss_dssp SCSSCCC--CC--TTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC---
T ss_pred CccccCC--CC--CcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe---
Confidence 3556665 22 37788888888 5666655 57778888888888885 777765 567788888888887 443
Q ss_pred ccCCchhhhcCCCCCcEEeccccCC
Q 010089 247 MCKIPEQLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 247 ~~~lp~~~~~~l~~L~~L~l~~~~~ 271 (518)
..+|.+.+..+++|++|++.+|..
T Consensus 94 -~~i~~~~f~~l~~L~~L~l~~n~l 117 (239)
T 2xwt_C 94 -TYIDPDALKELPLLKFLGIFNTGL 117 (239)
T ss_dssp -CEECTTSEECCTTCCEEEEEEECC
T ss_pred -eEcCHHHhCCCCCCCEEeCCCCCC
Confidence 566655567788888888877655
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=2.8e-17 Score=157.72 Aligned_cols=218 Identities=14% Similarity=0.139 Sum_probs=142.6
Q ss_pred heeecccccccc--cChhhhC-------CCCCCcEEEeecCCCcCccCccc--cCccccCEEecCCCcCCccchhhhcC-
Q 010089 163 GTLLLEYNHIEE--ITESFFQ-------SLPSLRVLNLSVNHYLTELPVGI--SSLVSLHHLDLSSTKVRGLPQELKAL- 230 (518)
Q Consensus 163 ~~l~l~~~~i~~--~~~~~~~-------~l~~Lr~L~L~~~~~~~~lp~~i--~~L~~L~~L~l~~~~l~~lp~~i~~L- 230 (518)
+.+++.+|++.. ++.. +. ++++|++|++++|...+.+|..+ +.+++|++|++++|.++.+|..++.+
T Consensus 66 ~~L~L~~n~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 66 KSLSLKRLTVRAARIPSR-ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHCCCCEEEEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred hhcccccccccCCCcCHH-HHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 337888888754 4443 33 68999999999995555788886 89999999999999999999888887
Q ss_pred ----CCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHh--hcccccceEE
Q 010089 231 ----VNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEI--HCLEQLNLIA 304 (518)
Q Consensus 231 ----~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~L~~L~~l~ 304 (518)
++|++|++++|.. ..++.+.++.+++|++|++++|... .....+..+ ..+++|+.
T Consensus 145 ~~~~~~L~~L~L~~N~l----~~~~~~~~~~l~~L~~L~Ls~N~l~-------------~~~~~~~~~~~~~l~~L~~-- 205 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHS----LNFSCEQVRVFPALSTLDLSDNPEL-------------GERGLISALCPLKFPTLQV-- 205 (312)
T ss_dssp TTCCTTCCEEEEESCSC----CCCCTTTCCCCSSCCEEECCSCTTC-------------HHHHHHHHSCTTSCTTCCE--
T ss_pred HhhcCCCcEEEeeCCCC----ccchHHHhccCCCCCEEECCCCCcC-------------cchHHHHHHHhccCCCCCE--
Confidence 9999999999976 5666545899999999999988752 111222233 44444444
Q ss_pred EEEecCccccccccCcchhhccceeecccCCCCCcc---c-cccccccccceEEeccCcCccccc-cCccccccccEEEE
Q 010089 305 LSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLN---L-LHLANMEHLQLFSIWDSNLEDWNV-DCAGEVQKMLKLHF 379 (518)
Q Consensus 305 ~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~---~-~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l 379 (518)
|+++++. +..+ + ..+..+++|+.|++++|.++...| .....+++|++|++
T Consensus 206 ------------------------L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 260 (312)
T 1wwl_A 206 ------------------------LALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260 (312)
T ss_dssp ------------------------EECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEEC
T ss_pred ------------------------EECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEEC
Confidence 4444432 2211 1 222345667777777776655332 33444667777777
Q ss_pred ecCCCCCCCcccccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCC
Q 010089 380 VNCSNVKDLTWLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNA 444 (518)
Q Consensus 380 ~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~ 444 (518)
+++ .++.+|.... ++|++|+++++. ++.++ ....+++|++|++++.
T Consensus 261 s~N-~l~~ip~~~~-~~L~~L~Ls~N~-l~~~p----------------~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 261 SFT-GLKQVPKGLP-AKLSVLDLSYNR-LDRNP----------------SPDELPQVGNLSLKGN 306 (312)
T ss_dssp TTS-CCSSCCSSCC-SEEEEEECCSSC-CCSCC----------------CTTTSCEEEEEECTTC
T ss_pred CCC-ccChhhhhcc-CCceEEECCCCC-CCCCh----------------hHhhCCCCCEEeccCC
Confidence 766 3445542111 667777777643 33321 2456677777777764
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=3.3e-16 Score=146.92 Aligned_cols=192 Identities=19% Similarity=0.250 Sum_probs=121.9
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCc-cccCccccCEEecCCCcCCccchhh-hcCCCCcEeeccCCc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLHHLDLSSTKVRGLPQEL-KALVNLRYLNLDYTN 242 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~l~~~~ 242 (518)
+++.++++..+|.. + .++|++|++++| .+..+|. .+.++++|++|++++|.++.+|..+ .++++|++|++++|.
T Consensus 21 l~~~~~~l~~ip~~-~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 21 VDCSSKKLTAIPSN-I--PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp EECTTSCCSSCCSC-C--CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred EEccCCCCCccCCC-C--CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence 56666666666654 2 246677777776 4444443 5666777777777777666666543 566777777777665
Q ss_pred ccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcch
Q 010089 243 EMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKL 322 (518)
Q Consensus 243 ~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l 322 (518)
. ..+|.+.+..+++|++|++.++....
T Consensus 97 l----~~~~~~~~~~l~~L~~L~l~~n~l~~------------------------------------------------- 123 (270)
T 2o6q_A 97 L----QALPIGVFDQLVNLAELRLDRNQLKS------------------------------------------------- 123 (270)
T ss_dssp C----CCCCTTTTTTCSSCCEEECCSSCCCC-------------------------------------------------
T ss_pred C----CcCCHhHcccccCCCEEECCCCccCe-------------------------------------------------
Confidence 4 55555545666666666666543310
Q ss_pred hhccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCc--ccccCCCccEE
Q 010089 323 QNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT--WLVFVPNLKWL 400 (518)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L 400 (518)
..+..+..+++|+.|++++|.++.+.+..+..+++|++|+++++ .+..++ .+..+++|++|
T Consensus 124 ----------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 124 ----------------LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTL 186 (270)
T ss_dssp ----------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred ----------------eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEE
Confidence 00123456778888888888887766666778888888888887 455554 35667888888
Q ss_pred EEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCc
Q 010089 401 QIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNAS 445 (518)
Q Consensus 401 ~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 445 (518)
+++++. ++.++. ..+..+++|+.|++.+++
T Consensus 187 ~L~~N~-l~~~~~--------------~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 187 KLDNNQ-LKRVPE--------------GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ECCSSC-CSCCCT--------------TTTTTCTTCCEEECCSSC
T ss_pred ECCCCc-CCcCCH--------------HHhccccCCCEEEecCCC
Confidence 888763 443332 134556777777777653
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=8.9e-17 Score=153.72 Aligned_cols=183 Identities=22% Similarity=0.270 Sum_probs=102.9
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCccc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEM 244 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l 244 (518)
+++.++.+..++. +..+++|++|++++| .+..++. +..+++|++|++++|.++.+| .+.++++|++|++++|..
T Consensus 46 L~l~~~~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l- 119 (308)
T 1h6u_A 46 LSAFGTGVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQI- 119 (308)
T ss_dssp EECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCC-
T ss_pred EEeeCCCccCchh--hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCC-
Confidence 5555555555542 555566666666655 4445544 555566666666665555554 355556666666665543
Q ss_pred ccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhh
Q 010089 245 CKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQN 324 (518)
Q Consensus 245 ~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~ 324 (518)
..++. +..+++|++|++.+|.... .+. +..++
T Consensus 120 ---~~~~~--l~~l~~L~~L~l~~n~l~~-------------~~~----l~~l~-------------------------- 151 (308)
T 1h6u_A 120 ---TDVTP--LAGLSNLQVLYLDLNQITN-------------ISP----LAGLT-------------------------- 151 (308)
T ss_dssp ---CCCGG--GTTCTTCCEEECCSSCCCC-------------CGG----GGGCT--------------------------
T ss_pred ---CCchh--hcCCCCCCEEECCCCccCc-------------Ccc----ccCCC--------------------------
Confidence 44443 5555666666655554421 000 22222
Q ss_pred ccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCcccccCCCccEEEEec
Q 010089 325 ITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLTWLVFVPNLKWLQIFN 404 (518)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~L~~ 404 (518)
.|+.|+++++. +..++. +..+++|+.|++++|.++.+.+ +..+++|+.|++++| .+..++.+..+++|+.|++++
T Consensus 152 ~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 152 NLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTN 226 (308)
T ss_dssp TCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEE
T ss_pred CccEEEccCCc-CCCChh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCC-ccCccccccCCCCCCEEEccC
Confidence 24455555542 233322 5666777777777776665433 566777777777776 455555567777777777777
Q ss_pred Cc
Q 010089 405 CD 406 (518)
Q Consensus 405 c~ 406 (518)
++
T Consensus 227 N~ 228 (308)
T 1h6u_A 227 QT 228 (308)
T ss_dssp EE
T ss_pred Ce
Confidence 54
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=2.6e-16 Score=163.66 Aligned_cols=232 Identities=17% Similarity=0.109 Sum_probs=174.5
Q ss_pred eeEEecCcCCCCCCchhhhhheeecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCc
Q 010089 143 KFLVRAGVGLTDAPKIEEWEGTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRG 222 (518)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~ 222 (518)
..+.-.+..+..+|.....-..+++++|++..+|. .+++|++|++++| .+..+|. .+.+|++|++++|+++.
T Consensus 64 ~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~N~l~~ 135 (622)
T 3g06_A 64 TTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIFGNQLTS 135 (622)
T ss_dssp SEEEECSCCCSCCCCCCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECCSSCCSC
T ss_pred cEEEecCCCCCCCCCcCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECCCCCCCc
Confidence 34444455566666633333449999999999886 6799999999999 7888887 67899999999999999
Q ss_pred cchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccce
Q 010089 223 LPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNL 302 (518)
Q Consensus 223 lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 302 (518)
+|.. +++|++|++++|.. ..+|. .+.+|+.|++.+|..... + ..+++|+.
T Consensus 136 lp~~---l~~L~~L~Ls~N~l----~~l~~----~~~~L~~L~L~~N~l~~l-------------~------~~~~~L~~ 185 (622)
T 3g06_A 136 LPVL---PPGLQELSVSDNQL----ASLPA----LPSELCKLWAYNNQLTSL-------------P------MLPSGLQE 185 (622)
T ss_dssp CCCC---CTTCCEEECCSSCC----SCCCC----CCTTCCEEECCSSCCSCC-------------C------CCCTTCCE
T ss_pred CCCC---CCCCCEEECcCCcC----CCcCC----ccCCCCEEECCCCCCCCC-------------c------ccCCCCcE
Confidence 9975 48999999999965 66765 357899999999877431 1 23566777
Q ss_pred EEEEEecCccccccccCcchhhccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecC
Q 010089 303 IALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNC 382 (518)
Q Consensus 303 l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c 382 (518)
++++.+....++ .....|+.|+++++. +..++. .+++|+.|++++|.++.+ | ..+++|+.|++++|
T Consensus 186 L~Ls~N~l~~l~------~~~~~L~~L~L~~N~-l~~l~~---~~~~L~~L~Ls~N~L~~l-p---~~l~~L~~L~Ls~N 251 (622)
T 3g06_A 186 LSVSDNQLASLP------TLPSELYKLWAYNNR-LTSLPA---LPSGLKELIVSGNRLTSL-P---VLPSELKELMVSGN 251 (622)
T ss_dssp EECCSSCCSCCC------CCCTTCCEEECCSSC-CSSCCC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSS
T ss_pred EECCCCCCCCCC------CccchhhEEECcCCc-ccccCC---CCCCCCEEEccCCccCcC-C---CCCCcCcEEECCCC
Confidence 777654433222 233668999998874 444443 247899999999988864 3 45789999999998
Q ss_pred CCCCCCcccccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCc
Q 010089 383 SNVKDLTWLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNAS 445 (518)
Q Consensus 383 ~~l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 445 (518)
.+..+|. .+++|+.|+|++|. +..++. .+..+++|+.|++++++
T Consensus 252 -~L~~lp~--~~~~L~~L~Ls~N~-L~~lp~---------------~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 252 -RLTSLPM--LPSGLLSLSVYRNQ-LTRLPE---------------SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp -CCSCCCC--CCTTCCEEECCSSC-CCSCCG---------------GGGGSCTTCEEECCSCC
T ss_pred -CCCcCCc--ccccCcEEeCCCCC-CCcCCH---------------HHhhccccCEEEecCCC
Confidence 6777776 68999999999974 555543 56788999999999975
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=2e-16 Score=148.92 Aligned_cols=98 Identities=23% Similarity=0.196 Sum_probs=67.9
Q ss_pred ecccccccccChhhhCCCCCCcEEEeecCCCcCccCc-cccCccccCEEecCCCcCCccch-hhhcCCCCcEeeccCCcc
Q 010089 166 LLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLHHLDLSSTKVRGLPQ-ELKALVNLRYLNLDYTNE 243 (518)
Q Consensus 166 ~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~ 243 (518)
...+.++..+|.. + .++|++|++++| .+..++. .+.++++|++|++++|.++.++. .+.++++|++|++++|..
T Consensus 13 ~c~~~~l~~ip~~-l--~~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 13 QCMELNFYKIPDN-L--PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp ECTTSCCSSCCSS-S--CTTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EecCCCccccCCC-C--CCCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 3444555566654 2 256788888888 5555544 67778888888888888777654 577788888888888765
Q ss_pred cccccCCchhhhcCCCCCcEEeccccCC
Q 010089 244 MCKMCKIPEQLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 244 l~~~~~lp~~~~~~l~~L~~L~l~~~~~ 271 (518)
..++.+.+.++++|++|++.+|..
T Consensus 89 ----~~~~~~~~~~l~~L~~L~l~~n~l 112 (276)
T 2z62_A 89 ----QSLALGAFSGLSSLQKLVAVETNL 112 (276)
T ss_dssp ----CEECTTTTTTCTTCCEEECTTSCC
T ss_pred ----CccChhhhcCCccccEEECCCCCc
Confidence 455544477788888888877655
No 69
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=1e-16 Score=150.54 Aligned_cols=177 Identities=15% Similarity=0.220 Sum_probs=102.5
Q ss_pred hCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCC
Q 010089 180 FQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFS 259 (518)
Q Consensus 180 ~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~ 259 (518)
...+++|+.|+++++ .+..++ .++.+++|++|++++|.++.++ .+.++++|++|++++|.. ..++...+..++
T Consensus 37 ~~~l~~L~~L~l~~~-~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l----~~~~~~~~~~l~ 109 (272)
T 3rfs_A 37 QNELNSIDQIIANNS-DIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQL----QSLPNGVFDKLT 109 (272)
T ss_dssp HHHHTTCCEEECTTS-CCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCC----CCCCTTTTTTCT
T ss_pred cccccceeeeeeCCC-Cccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCcc----CccChhHhcCCc
Confidence 445667777777777 555554 5677777777777777777764 567777777777777754 556655467777
Q ss_pred CCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhhccceeecccCCCCCc
Q 010089 260 KLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPL 339 (518)
Q Consensus 260 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~ 339 (518)
+|++|++.+|..... .+. .+..+++ |++|+++++. +..
T Consensus 110 ~L~~L~L~~n~l~~~------------~~~---~~~~l~~--------------------------L~~L~L~~n~-l~~ 147 (272)
T 3rfs_A 110 NLKELVLVENQLQSL------------PDG---VFDKLTN--------------------------LTYLNLAHNQ-LQS 147 (272)
T ss_dssp TCCEEECTTSCCCCC------------CTT---TTTTCTT--------------------------CCEEECCSSC-CCC
T ss_pred CCCEEECCCCcCCcc------------CHH---HhccCCC--------------------------CCEEECCCCc-cCc
Confidence 777777776654210 000 0111111 2333333332 222
Q ss_pred cc-cccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCc--ccccCCCccEEEEecCc
Q 010089 340 NL-LHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT--WLVFVPNLKWLQIFNCD 406 (518)
Q Consensus 340 ~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~L~~c~ 406 (518)
++ ..+..+++|+.|++++|.++...+..+..+++|+.|++++| .+..++ .+..+++|+.|++++++
T Consensus 148 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCC
Confidence 22 23455666666666666666555555566666666666666 333333 24556666666666653
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=5.2e-16 Score=146.91 Aligned_cols=196 Identities=19% Similarity=0.118 Sum_probs=116.0
Q ss_pred hCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCcc-chhhhcCCCCcEeeccCCcccccccCCchhhhcCC
Q 010089 180 FQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGL-PQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSF 258 (518)
Q Consensus 180 ~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l 258 (518)
+.++++++.++++++ .++.+|..+. .++++|++++|.++.+ |..+.++++|++|++++|.. ..++. .+.+
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~--~~~l 76 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL----TKLQV--DGTL 76 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC----CEEEC--CSCC
T ss_pred ccccCCccEEECCCC-CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc----CcccC--CCCC
Confidence 456677777777777 6667776664 5777777777777765 34577777777777777754 45555 3667
Q ss_pred CCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhhccceeecccCCCCC
Q 010089 259 SKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLP 338 (518)
Q Consensus 259 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~ 338 (518)
++|++|+++++.... .+. .+..++ .|+.|+++++. +.
T Consensus 77 ~~L~~L~Ls~N~l~~-------------l~~---~~~~l~--------------------------~L~~L~l~~N~-l~ 113 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQS-------------LPL---LGQTLP--------------------------ALTVLDVSFNR-LT 113 (290)
T ss_dssp TTCCEEECCSSCCSS-------------CCC---CTTTCT--------------------------TCCEEECCSSC-CC
T ss_pred CcCCEEECCCCcCCc-------------Cch---hhccCC--------------------------CCCEEECCCCc-Cc
Confidence 777777777665421 000 011111 23344444332 22
Q ss_pred ccc-cccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCcc--cccCCCccEEEEecCcchhhhhccc
Q 010089 339 LNL-LHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLTW--LVFVPNLKWLQIFNCDDMEEIISVE 415 (518)
Q Consensus 339 ~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~~~~~~ 415 (518)
.++ ..+..+++|+.|++++|.++.+.+..+..+++|+.|+++++ .++.++. +..+++|+.|+++++. ++.++.
T Consensus 114 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~-- 189 (290)
T 1p9a_G 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS-LYTIPK-- 189 (290)
T ss_dssp CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC-CCCCCT--
T ss_pred ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCc-CCccCh--
Confidence 222 34566677777777777666655555666777777777766 4455542 4556777777776643 333332
Q ss_pred chhccccccccCCCCccCCCcceeeccCC
Q 010089 416 KFEKLGEVSEMMGEPILFSELELLVISNA 444 (518)
Q Consensus 416 ~~~~~~~l~~~~~~~~~~~~L~~L~l~~~ 444 (518)
.....++|+.|.+.+.
T Consensus 190 -------------~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 190 -------------GFFGSHLLPFAFLHGN 205 (290)
T ss_dssp -------------TTTTTCCCSEEECCSC
T ss_pred -------------hhcccccCCeEEeCCC
Confidence 3444556666666653
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=3.3e-17 Score=166.78 Aligned_cols=95 Identities=24% Similarity=0.220 Sum_probs=82.3
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCccc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEM 244 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l 244 (518)
+++++|.+..+++..|..+++|++|+|++| .+...+. ++.+++|++|++++|.++.+|. .++|++|++++|..
T Consensus 39 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~N~l- 111 (487)
T 3oja_A 39 LDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNI- 111 (487)
T ss_dssp EECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCC-
T ss_pred EEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcCCcC-
Confidence 899999999999888999999999999999 5665554 9999999999999999998875 38999999999976
Q ss_pred ccccCCchhhhcCCCCCcEEeccccCCC
Q 010089 245 CKMCKIPEQLISSFSKLQVLRMLHCGSN 272 (518)
Q Consensus 245 ~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 272 (518)
..++. ..+++|++|++.+|...
T Consensus 112 ---~~~~~---~~l~~L~~L~L~~N~l~ 133 (487)
T 3oja_A 112 ---SRVSC---SRGQGKKNIYLANNKIT 133 (487)
T ss_dssp ---CCEEE---CCCSSCEEEECCSSCCC
T ss_pred ---CCCCc---cccCCCCEEECCCCCCC
Confidence 55554 35789999999998774
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=4.8e-16 Score=145.78 Aligned_cols=123 Identities=28% Similarity=0.348 Sum_probs=100.5
Q ss_pred eEEecCcCCCCCCchh-hhhheeecccccccccChhhhCCCCCCcEEEeecCCCcCccCcc-ccCccccCEEecCCCcCC
Q 010089 144 FLVRAGVGLTDAPKIE-EWEGTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSSTKVR 221 (518)
Q Consensus 144 ~~~~~~~~~~~~~~~~-~~~~~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~l~ 221 (518)
.+...+..+..+|... ...+.+++.+|++..+++..|.++++|++|++++| .+..+|.. +..+++|++|++++|.++
T Consensus 20 ~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~ 98 (270)
T 2o6q_A 20 SVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQ 98 (270)
T ss_dssp EEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCC
T ss_pred EEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCC
Confidence 3444555566666522 22334999999999999888999999999999999 67777766 488999999999999999
Q ss_pred ccchh-hhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCC
Q 010089 222 GLPQE-LKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 222 ~lp~~-i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~ 271 (518)
.+|.. +..+++|++|++++|.. ..++...+..+++|++|++++|..
T Consensus 99 ~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 99 ALPIGVFDQLVNLAELRLDRNQL----KSLPPRVFDSLTKLTYLSLGYNEL 145 (270)
T ss_dssp CCCTTTTTTCSSCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCHhHcccccCCCEEECCCCcc----CeeCHHHhCcCcCCCEEECCCCcC
Confidence 98764 68899999999999976 677776688999999999988765
No 73
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.68 E-value=2.8e-16 Score=166.16 Aligned_cols=305 Identities=18% Similarity=0.171 Sum_probs=195.8
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCc-cccCccccCEEecCCCcCCccch-hhhcCCCCcEeeccCCc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLHHLDLSSTKVRGLPQ-ELKALVNLRYLNLDYTN 242 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 242 (518)
+++++|++..+++.+|.++++|++|+|++| .++.+|. .|+++.+|++|++++|+++.+|. .++++++|++|++++|.
T Consensus 81 L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~ 159 (635)
T 4g8a_A 81 LDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 159 (635)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred EECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc
Confidence 888888888888888888999999999988 6777764 47888999999999988888776 47888899999998886
Q ss_pred ccccccCCchhhhcCCCCCcEEeccccCCCCccccc---------------------------------------cCCCC
Q 010089 243 EMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAE---------------------------------------EGNVL 283 (518)
Q Consensus 243 ~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~---------------------------------------~~~~~ 283 (518)
... ..+|.. ++.+++|++|++.+|.....+... ..+..
T Consensus 160 l~~--~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~ 236 (635)
T 4g8a_A 160 IQS--FKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 236 (635)
T ss_dssp CCC--CCCCGG-GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCS
T ss_pred ccc--CCCchh-hccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccc
Confidence 521 134553 788888888888877654321100 00000
Q ss_pred c-chhhhhH-----------------------------------------------------------------------
Q 010089 284 S-DDAESLM----------------------------------------------------------------------- 291 (518)
Q Consensus 284 ~-~~~~~~~----------------------------------------------------------------------- 291 (518)
. ......+
T Consensus 237 ~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 316 (635)
T 4g8a_A 237 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSV 316 (635)
T ss_dssp SHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESC
T ss_pred cccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccc
Confidence 0 0000000
Q ss_pred -----HHhh-------------------------------------------cccccceEEEEEecCc------------
Q 010089 292 -----KEIH-------------------------------------------CLEQLNLIALSLRGSR------------ 311 (518)
Q Consensus 292 -----~~l~-------------------------------------------~L~~L~~l~~~~~~~~------------ 311 (518)
..+. .+++|+.+.++.+...
T Consensus 317 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~ 396 (635)
T 4g8a_A 317 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 396 (635)
T ss_dssp EEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSC
T ss_pred ccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhh
Confidence 0000 0111111111110000
Q ss_pred -cccc----------cccCcchhhccceeecccCCCCCccc-cccccccccceEEeccCcCccccccCccccccccEEEE
Q 010089 312 -GVEN----------FLKFPKLQNITQALHIKDCNSLPLNL-LHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHF 379 (518)
Q Consensus 312 -~~~~----------l~~~~~l~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 379 (518)
.... ..........++.+++..+......+ ..+..+++++.++++.+.+....+..+..+++|+.|++
T Consensus 397 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~L 476 (635)
T 4g8a_A 397 ISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 476 (635)
T ss_dssp SCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred hhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhh
Confidence 0000 00111123457777877665333322 45677889999999999887777777888999999999
Q ss_pred ecCCCCCCC-c-ccccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCC-CCCC
Q 010089 380 VNCSNVKDL-T-WLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYR-DPLP 456 (518)
Q Consensus 380 ~~c~~l~~l-~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~ 456 (518)
+++.....+ | .+..+++|+.|+|++|. ++.+++ ..+.++++|++|+|+++ ++..++. ....
T Consensus 477 s~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~--------------~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~ 540 (635)
T 4g8a_A 477 AGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP--------------TAFNSLSSLQVLNMSHN-NFFSLDTFPYKC 540 (635)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT--------------TTTTTCTTCCEEECTTS-CCCBCCCGGGTT
T ss_pred hhcccccccCchhhhhccccCEEECCCCc-cCCcCh--------------HHHcCCCCCCEEECCCC-cCCCCChhHHhC
Confidence 988644433 2 56788999999999874 554432 25678899999999986 6777754 3567
Q ss_pred CCCcceEeccCCCCCcCCCC-CCCCCCCcceEEEc
Q 010089 457 FPHLERIGISECPKLKKLPL-NSSSAKGRKIVIYG 490 (518)
Q Consensus 457 ~~~L~~L~i~~C~~L~~lp~-~~~~~~~~l~~~~~ 490 (518)
+++|+.|+++++ +++.+|. .+..+..+++.++.
T Consensus 541 l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 541 LNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp CTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEEC
T ss_pred CCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEe
Confidence 899999999987 6776644 44444235555543
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=6e-16 Score=145.72 Aligned_cols=212 Identities=17% Similarity=0.167 Sum_probs=142.3
Q ss_pred ecCcCCCCCCchh-hhhheeecccccccccChhhhCCCCCCcEEEeecCCCcCccC-ccccCccccCEEecCCCcCCccc
Q 010089 147 RAGVGLTDAPKIE-EWEGTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDLSSTKVRGLP 224 (518)
Q Consensus 147 ~~~~~~~~~~~~~-~~~~~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~l~~lp 224 (518)
..+.....+|... ...+.+++++|++..+++..|.++++|++|++++| .+..++ ..+..+++|++|++++|.++.++
T Consensus 14 c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 14 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp CTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred ecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccC
Confidence 3344455555422 22334999999999999877999999999999999 566655 47899999999999999999876
Q ss_pred -hhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceE
Q 010089 225 -QELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLI 303 (518)
Q Consensus 225 -~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l 303 (518)
..+.++++|++|++++|.. ..++...+..+++|++|++.+|..... .....+..+++|
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------~l~~~~~~l~~L--- 151 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNL----ASLENFPIGHLKTLKELNVAHNLIQSF--------------KLPEYFSNLTNL--- 151 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCC----CCSTTCCCTTCTTCCEEECCSSCCCCC--------------CCCGGGGGCTTC---
T ss_pred hhhhcCCccccEEECCCCCc----cccCchhcccCCCCCEEECcCCcccee--------------cCchhhccCCCC---
Confidence 5789999999999999976 566654488999999999998876320 001122233333
Q ss_pred EEEEecCccccccccCcchhhccceeecccCCCCCccc-cccccccccc----eEEeccCcCccccccCccccccccEEE
Q 010089 304 ALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNL-LHLANMEHLQ----LFSIWDSNLEDWNVDCAGEVQKMLKLH 378 (518)
Q Consensus 304 ~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~----~L~l~~~~l~~~~~~~~~~l~~L~~L~ 378 (518)
++|+++++. +...+ ..+..+.+|+ .|++++|.++.+.+..+. ..+|+.|+
T Consensus 152 -----------------------~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~ 206 (276)
T 2z62_A 152 -----------------------EHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELA 206 (276)
T ss_dssp -----------------------CEEECCSSC-CCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEE
T ss_pred -----------------------CEEECCCCC-CCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEE
Confidence 344444432 12221 3334444444 677777777664444333 34677777
Q ss_pred EecCCCCCCCc--ccccCCCccEEEEecCc
Q 010089 379 FVNCSNVKDLT--WLVFVPNLKWLQIFNCD 406 (518)
Q Consensus 379 l~~c~~l~~l~--~l~~l~~L~~L~L~~c~ 406 (518)
++++ .+..++ .+..+++|+.|++++++
T Consensus 207 L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 207 LDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 7776 355554 24567777777777543
No 75
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=4.1e-17 Score=158.44 Aligned_cols=243 Identities=15% Similarity=0.166 Sum_probs=155.2
Q ss_pred eecccccccccChhhhCCC--CCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCc--cchhhhcCCCCcEeeccC
Q 010089 165 LLLEYNHIEEITESFFQSL--PSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRG--LPQELKALVNLRYLNLDY 240 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l--~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~ 240 (518)
+++.++.+. +..+..+ +++++|+++++ .+...+..+..+++|++|++++|.+.. +|..+.++++|++|++++
T Consensus 52 l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~ 127 (336)
T 2ast_B 52 LDLTGKNLH---PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 127 (336)
T ss_dssp EECTTCBCC---HHHHHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred eccccccCC---HHHHHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcC
Confidence 566666554 3446666 88999999998 566666667789999999999998775 788889999999999999
Q ss_pred CcccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCc
Q 010089 241 TNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFP 320 (518)
Q Consensus 241 ~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~ 320 (518)
|... ...+.. ++.+++|++|++.+|... ........+..+++|
T Consensus 128 ~~l~---~~~~~~-l~~~~~L~~L~L~~~~~l-------------~~~~l~~~~~~~~~L-------------------- 170 (336)
T 2ast_B 128 LRLS---DPIVNT-LAKNSNLVRLNLSGCSGF-------------SEFALQTLLSSCSRL-------------------- 170 (336)
T ss_dssp CBCC---HHHHHH-HTTCTTCSEEECTTCBSC-------------CHHHHHHHHHHCTTC--------------------
T ss_pred cccC---HHHHHH-HhcCCCCCEEECCCCCCC-------------CHHHHHHHHhcCCCC--------------------
Confidence 8653 345554 788999999999988421 111122223344444
Q ss_pred chhhccceeecccCCCCCc--ccccccccc-ccceEEeccC--cCc-cccccCccccccccEEEEecCCCCC--CCcccc
Q 010089 321 KLQNITQALHIKDCNSLPL--NLLHLANME-HLQLFSIWDS--NLE-DWNVDCAGEVQKMLKLHFVNCSNVK--DLTWLV 392 (518)
Q Consensus 321 ~l~~~L~~L~l~~~~~~~~--~~~~l~~l~-~L~~L~l~~~--~l~-~~~~~~~~~l~~L~~L~l~~c~~l~--~l~~l~ 392 (518)
++|++++|..+.. ++..+..++ +|+.|++++| .++ ...+..+..+++|++|++++|..+. .++.+.
T Consensus 171 ------~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 244 (336)
T 2ast_B 171 ------DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 244 (336)
T ss_dssp ------CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred ------CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence 4444444433332 234456677 7888888877 343 2234455667888888888876443 244667
Q ss_pred cCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCC-CCCC-CCcceEeccCCCC
Q 010089 393 FVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRD-PLPF-PHLERIGISECPK 470 (518)
Q Consensus 393 ~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~-~~L~~L~i~~C~~ 470 (518)
.+++|++|++++|..+....- ..+..+++|+.|++.+| ++.. ...+ .+|+.|+++ |.+
T Consensus 245 ~l~~L~~L~l~~~~~~~~~~~--------------~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~-~n~ 304 (336)
T 2ast_B 245 QLNYLQHLSLSRCYDIIPETL--------------LELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQIN-CSH 304 (336)
T ss_dssp GCTTCCEEECTTCTTCCGGGG--------------GGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEES-CCC
T ss_pred CCCCCCEeeCCCCCCCCHHHH--------------HHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEe-ccc
Confidence 788888888888763322110 13456788888888887 2221 1122 235555564 456
Q ss_pred CcCC
Q 010089 471 LKKL 474 (518)
Q Consensus 471 L~~l 474 (518)
++..
T Consensus 305 l~~~ 308 (336)
T 2ast_B 305 FTTI 308 (336)
T ss_dssp SCCT
T ss_pred Cccc
Confidence 6664
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=1.5e-17 Score=159.51 Aligned_cols=246 Identities=16% Similarity=0.205 Sum_probs=133.7
Q ss_pred hCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCc--cchhhh-------cCCCCcEeeccCCcccccccCC
Q 010089 180 FQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRG--LPQELK-------ALVNLRYLNLDYTNEMCKMCKI 250 (518)
Q Consensus 180 ~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~--lp~~i~-------~L~~L~~L~l~~~~~l~~~~~l 250 (518)
++..++|++|++++| .+ .+|..+... |++|+++++.+.. +|..+. ++++|++|++++|... ..+
T Consensus 39 ~~~~~~L~~l~l~~n-~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~---~~~ 111 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVD-TE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT---GTA 111 (312)
T ss_dssp EEEEEECTTHHHHCC-TT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCB---SCC
T ss_pred EccCCCceeEeeccc-cc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCccc---chh
Confidence 455667777777777 44 677666544 7777787777654 666555 6788888888887664 456
Q ss_pred chhhh-cCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcc--cccceEEEEEecCccccccccCcchhhccc
Q 010089 251 PEQLI-SSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCL--EQLNLIALSLRGSRGVENFLKFPKLQNITQ 327 (518)
Q Consensus 251 p~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L--~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~ 327 (518)
|..++ ..+++|++|++++|.... .+..+..+... ++|+.++++.+...... .........|+
T Consensus 112 ~~~~~~~~l~~L~~L~Ls~N~l~~-------------~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~--~~~~~~l~~L~ 176 (312)
T 1wwl_A 112 PPPLLEATGPDLNILNLRNVSWAT-------------RDAWLAELQQWLKPGLKVLSIAQAHSLNFS--CEQVRVFPALS 176 (312)
T ss_dssp CCCSSSCCSCCCSEEEEESCBCSS-------------SSSHHHHHHTTCCTTCCEEEEESCSCCCCC--TTTCCCCSSCC
T ss_pred HHHHHHhcCCCccEEEccCCCCcc-------------hhHHHHHHHHhhcCCCcEEEeeCCCCccch--HHHhccCCCCC
Confidence 66521 777888888888776632 12333333221 55555555543321111 00011123355
Q ss_pred eeecccCCCCCc--ccccc--ccccccceEEeccCcCccc---cccCccccccccEEEEecCCCCCC-C--cccccCCCc
Q 010089 328 ALHIKDCNSLPL--NLLHL--ANMEHLQLFSIWDSNLEDW---NVDCAGEVQKMLKLHFVNCSNVKD-L--TWLVFVPNL 397 (518)
Q Consensus 328 ~L~l~~~~~~~~--~~~~l--~~l~~L~~L~l~~~~l~~~---~~~~~~~l~~L~~L~l~~c~~l~~-l--~~l~~l~~L 397 (518)
+|+++++..... .+..+ ..+++|+.|++++|.++.. ....+..+++|+.|+++++. +.. . +....+++|
T Consensus 177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L 255 (312)
T 1wwl_A 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQL 255 (312)
T ss_dssp EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTC
T ss_pred EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhhhcCCC
Confidence 666665542221 11222 5566666666666655521 11222345666666666653 332 2 233445666
Q ss_pred cEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCCCCCCCCcceEeccCC
Q 010089 398 KWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGISEC 468 (518)
Q Consensus 398 ~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~C 468 (518)
++|+++++. ++.++. ... ++|++|+++++ .++.+|. ...+++|+.|++++.
T Consensus 256 ~~L~Ls~N~-l~~ip~---------------~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 256 NSLNLSFTG-LKQVPK---------------GLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CEEECTTSC-CSSCCS---------------SCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTC
T ss_pred CEEECCCCc-cChhhh---------------hcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCC
Confidence 666666643 333321 111 56666666664 5555544 555666666666654
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=2.7e-16 Score=144.72 Aligned_cols=112 Identities=20% Similarity=0.340 Sum_probs=91.7
Q ss_pred CCCCCchhhhhheeecccccccccChhhhCCCCCCcEEEeecCCCcCccCc-cccCccccCEEecCC-CcCCccch-hhh
Q 010089 152 LTDAPKIEEWEGTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLHHLDLSS-TKVRGLPQ-ELK 228 (518)
Q Consensus 152 ~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~-~~l~~lp~-~i~ 228 (518)
...+|........+++.+|++..+++..|.++++|++|++++|..++.+|. .+.++++|++|++++ +.++.+|. .+.
T Consensus 23 l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~ 102 (239)
T 2xwt_C 23 IQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK 102 (239)
T ss_dssp CSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred ccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence 455665333333499999999999998899999999999999943777765 789999999999998 89999875 578
Q ss_pred cCCCCcEeeccCCcccccccCCchhhhcCCCCCc---EEecccc
Q 010089 229 ALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQ---VLRMLHC 269 (518)
Q Consensus 229 ~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~---~L~l~~~ 269 (518)
.+++|++|++++|.. ..+|. +..+++|+ +|++.+|
T Consensus 103 ~l~~L~~L~l~~n~l----~~lp~--~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGL----KMFPD--LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp CCTTCCEEEEEEECC----CSCCC--CTTCCBCCSEEEEEEESC
T ss_pred CCCCCCEEeCCCCCC----ccccc--cccccccccccEEECCCC
Confidence 999999999999976 66776 67777777 7777766
No 78
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=1.1e-15 Score=149.12 Aligned_cols=235 Identities=15% Similarity=0.192 Sum_probs=146.9
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCc-cccCccccCEEecCCCcCCc-cch-hhhcCCCCcEeeccCC
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLHHLDLSSTKVRG-LPQ-ELKALVNLRYLNLDYT 241 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~l~~-lp~-~i~~L~~L~~L~l~~~ 241 (518)
+...+++++.+|..+ .+++++|+|++| .++.+|. .|.++++|++|++++|.+.+ +|. .+.++++|+.+...++
T Consensus 14 v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL---PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEESTTCCSCCTTC---CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEecCCCCCccCcCc---CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 667778888888763 367899999999 7888875 57899999999999998755 665 4678888776544443
Q ss_pred cccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcc
Q 010089 242 NEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPK 321 (518)
Q Consensus 242 ~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~ 321 (518)
..+ ..++++.+..+++|++|++.+|.....+. ......++
T Consensus 90 N~l---~~l~~~~f~~l~~L~~L~l~~n~l~~~~~-----------------~~~~~~~~-------------------- 129 (350)
T 4ay9_X 90 NNL---LYINPEAFQNLPNLQYLLISNTGIKHLPD-----------------VHKIHSLQ-------------------- 129 (350)
T ss_dssp TTC---CEECTTSBCCCTTCCEEEEEEECCSSCCC-----------------CTTCCBSS--------------------
T ss_pred Ccc---cccCchhhhhccccccccccccccccCCc-----------------hhhcccch--------------------
Confidence 344 67776668899999999998887632110 00111111
Q ss_pred hhhccceeecccCCCCCccc-cccccc-cccceEEeccCcCccccccCccccccccEEEEecCCCCCCCcc--cccCCCc
Q 010089 322 LQNITQALHIKDCNSLPLNL-LHLANM-EHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLTW--LVFVPNL 397 (518)
Q Consensus 322 l~~~L~~L~l~~~~~~~~~~-~~l~~l-~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--l~~l~~L 397 (518)
+..|++.++..+..++ ..+..+ ..++.|++++|.++.+.+. .....+|++|.+.++..++.+|. +..+++|
T Consensus 130 ----l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~-~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L 204 (350)
T 4ay9_X 130 ----KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS-AFNGTQLDELNLSDNNNLEELPNDVFHGASGP 204 (350)
T ss_dssp ----CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT-SSTTEEEEEEECTTCTTCCCCCTTTTTTEECC
T ss_pred ----hhhhhhccccccccccccchhhcchhhhhhccccccccCCChh-hccccchhHHhhccCCcccCCCHHHhccCccc
Confidence 1223333333333332 122222 3466677777766654333 23345677777766666666652 4567777
Q ss_pred cEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCCCCCCCCcceEeccC
Q 010089 398 KWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGISE 467 (518)
Q Consensus 398 ~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~ 467 (518)
+.|+++++ .++.++ ...|.+|+.|.+.++.+++.+| ....+++|+.+++.+
T Consensus 205 ~~LdLs~N-~l~~lp-----------------~~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 205 VILDISRT-RIHSLP-----------------SYGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp SEEECTTS-CCCCCC-----------------SSSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred chhhcCCC-CcCccC-----------------hhhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 77777764 344432 2346667777777777777776 355667777776643
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=4e-17 Score=158.49 Aligned_cols=223 Identities=14% Similarity=0.136 Sum_probs=164.4
Q ss_pred CCCcEEEeecCCCcCccCccccCc--cccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccC-CchhhhcCCCC
Q 010089 184 PSLRVLNLSVNHYLTELPVGISSL--VSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCK-IPEQLISSFSK 260 (518)
Q Consensus 184 ~~Lr~L~L~~~~~~~~lp~~i~~L--~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~-lp~~~~~~l~~ 260 (518)
..++.++++++ .+. |..+..+ .++++|+++++.+...+..+.++++|++|++++|... .. +|.. +..+++
T Consensus 47 ~~~~~l~l~~~-~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~---~~~~~~~-~~~~~~ 119 (336)
T 2ast_B 47 SLWQTLDLTGK-NLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE---VSTLHGI-LSQCSK 119 (336)
T ss_dssp TTSSEEECTTC-BCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEEC---HHHHHHH-HTTBCC
T ss_pred hhheeeccccc-cCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcC---HHHHHHH-HhhCCC
Confidence 34789999988 343 5667777 8999999999999987777889999999999999753 23 5554 899999
Q ss_pred CcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhhccceeecccCCCCCc-
Q 010089 261 LQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPL- 339 (518)
Q Consensus 261 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~- 339 (518)
|++|++.+|... ......+..+++ |++|++++|..+..
T Consensus 120 L~~L~L~~~~l~---------------~~~~~~l~~~~~--------------------------L~~L~L~~~~~l~~~ 158 (336)
T 2ast_B 120 LQNLSLEGLRLS---------------DPIVNTLAKNSN--------------------------LVRLNLSGCSGFSEF 158 (336)
T ss_dssp CSEEECTTCBCC---------------HHHHHHHTTCTT--------------------------CSEEECTTCBSCCHH
T ss_pred CCEEeCcCcccC---------------HHHHHHHhcCCC--------------------------CCEEECCCCCCCCHH
Confidence 999999998652 122333333333 45666666644443
Q ss_pred -cccccccccccceEEeccC-cCccc-cccCccccc-cccEEEEecCC-CCC--CCc-ccccCCCccEEEEecCcchhhh
Q 010089 340 -NLLHLANMEHLQLFSIWDS-NLEDW-NVDCAGEVQ-KMLKLHFVNCS-NVK--DLT-WLVFVPNLKWLQIFNCDDMEEI 411 (518)
Q Consensus 340 -~~~~l~~l~~L~~L~l~~~-~l~~~-~~~~~~~l~-~L~~L~l~~c~-~l~--~l~-~l~~l~~L~~L~L~~c~~l~~~ 411 (518)
++..+..+++|+.|++++| .++.. .+..+..++ +|++|++++|. .+. .++ .+..+++|++|++++|..+...
T Consensus 159 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 238 (336)
T 2ast_B 159 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND 238 (336)
T ss_dssp HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG
T ss_pred HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH
Confidence 3455778899999999999 88853 355677899 99999999985 333 233 4567999999999999755432
Q ss_pred hcccchhccccccccCCCCccCCCcceeeccCCccccccC-CCCCCCCCcceEeccCC
Q 010089 412 ISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIY-RDPLPFPHLERIGISEC 468 (518)
Q Consensus 412 ~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~i~~C 468 (518)
.. ..+..+++|++|++++|..+.... .....+++|+.|++++|
T Consensus 239 ~~--------------~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 239 CF--------------QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GG--------------GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HH--------------HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 11 145678999999999997443221 13566999999999999
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=1.9e-15 Score=143.10 Aligned_cols=189 Identities=16% Similarity=0.150 Sum_probs=116.3
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCcc-CccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNE 243 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 243 (518)
+++.+++++.+|..+ .+.+++|++++| .+..+ |..+..+++|++|++++|.++.+|.. +.+++|++|++++|..
T Consensus 15 l~~~~~~l~~ip~~~---~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l 89 (290)
T 1p9a_G 15 VNCDKRNLTALPPDL---PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQL 89 (290)
T ss_dssp EECTTSCCSSCCSCC---CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCC
T ss_pred EECCCCCCCcCCCCC---CCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcC
Confidence 566666666666552 256677777777 33333 45567777777777777777776654 6677777777777754
Q ss_pred cccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchh
Q 010089 244 MCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQ 323 (518)
Q Consensus 244 l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~ 323 (518)
..+|.. +..+++|++|++.+|.....+ + ..+..++
T Consensus 90 ----~~l~~~-~~~l~~L~~L~l~~N~l~~l~------------~---~~~~~l~------------------------- 124 (290)
T 1p9a_G 90 ----QSLPLL-GQTLPALTVLDVSFNRLTSLP------------L---GALRGLG------------------------- 124 (290)
T ss_dssp ----SSCCCC-TTTCTTCCEEECCSSCCCCCC------------S---STTTTCT-------------------------
T ss_pred ----CcCchh-hccCCCCCEEECCCCcCcccC------------H---HHHcCCC-------------------------
Confidence 566654 667777777777766552210 0 0011122
Q ss_pred hccceeecccCCCCCccc-cccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCc-ccccCCCccEEE
Q 010089 324 NITQALHIKDCNSLPLNL-LHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT-WLVFVPNLKWLQ 401 (518)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~ 401 (518)
.|+.|+++++. +..++ ..+..+++|+.|++++|.++.+.+..+..+++|+.|+++++ .+..+| .+..+++|+.|+
T Consensus 125 -~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~ 201 (290)
T 1p9a_G 125 -ELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAF 201 (290)
T ss_dssp -TCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEE
T ss_pred -CCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEE
Confidence 23444444442 22222 34556777888888888777766666677888888888877 455554 455677888888
Q ss_pred EecCc
Q 010089 402 IFNCD 406 (518)
Q Consensus 402 L~~c~ 406 (518)
|++++
T Consensus 202 L~~Np 206 (290)
T 1p9a_G 202 LHGNP 206 (290)
T ss_dssp CCSCC
T ss_pred eCCCC
Confidence 87654
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.63 E-value=1.2e-15 Score=143.29 Aligned_cols=186 Identities=17% Similarity=0.268 Sum_probs=143.8
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchh-hhcCCCCcEeeccCCcc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQE-LKALVNLRYLNLDYTNE 243 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~ 243 (518)
+.+.++.+..++. +..+++|++|++++| .+..++ .++.+++|++|++++|.++.+|.. +.++++|++|++++|..
T Consensus 46 L~l~~~~i~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 121 (272)
T 3rfs_A 46 IIANNSDIKSVQG--IQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121 (272)
T ss_dssp EECTTSCCCCCTT--GGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred eeeCCCCcccccc--cccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcC
Confidence 7888888887764 889999999999999 666665 899999999999999999997765 68999999999999976
Q ss_pred cccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchh
Q 010089 244 MCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQ 323 (518)
Q Consensus 244 l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~ 323 (518)
..+|...+..+++|++|++.+|.....+ + ..+..++
T Consensus 122 ----~~~~~~~~~~l~~L~~L~L~~n~l~~~~------------~---~~~~~l~------------------------- 157 (272)
T 3rfs_A 122 ----QSLPDGVFDKLTNLTYLNLAHNQLQSLP------------K---GVFDKLT------------------------- 157 (272)
T ss_dssp ----CCCCTTTTTTCTTCCEEECCSSCCCCCC------------T---TTTTTCT-------------------------
T ss_pred ----CccCHHHhccCCCCCEEECCCCccCccC------------H---HHhccCc-------------------------
Confidence 6777766889999999999998763210 0 1112223
Q ss_pred hccceeecccCCCCCccc-cccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCcccccCCCccEEEE
Q 010089 324 NITQALHIKDCNSLPLNL-LHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLTWLVFVPNLKWLQI 402 (518)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~L 402 (518)
.|+.|+++++. +...+ ..+..+++|+.|++++|.++...+..+..+++|+.|++++++- .+.+|+|+.|++
T Consensus 158 -~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~------~~~~~~l~~l~~ 229 (272)
T 3rfs_A 158 -NLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW------DCTCPGIRYLSE 229 (272)
T ss_dssp -TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB------CCCTTTTHHHHH
T ss_pred -cCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc------cccCcHHHHHHH
Confidence 34566666654 33333 4467889999999999988887777788999999999998842 345677777777
Q ss_pred ecCc
Q 010089 403 FNCD 406 (518)
Q Consensus 403 ~~c~ 406 (518)
+.+.
T Consensus 230 ~~n~ 233 (272)
T 3rfs_A 230 WINK 233 (272)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6543
No 82
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.63 E-value=1.5e-16 Score=181.23 Aligned_cols=131 Identities=17% Similarity=0.255 Sum_probs=111.7
Q ss_pred CcccCCCCchHHHHHHHHhcCCCChhHHHHHHHHHhccCCcc-----cchHHHHHHHHhhhcCCCCchhhhhHhhhhccc
Q 010089 1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKF-----EDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLF 75 (518)
Q Consensus 1 I~~~c~GlPLai~~ig~~L~~~~~~~~W~~~l~~l~~~~~~~-----~~~~~~i~~~L~~sY~~L~~~~lk~cfl~~a~f 75 (518)
|+++|+|+||||+++|++|+.+. ..|+.+++.+....+.. ....+.+..++.+||+.||+ +.|.||+|||+|
T Consensus 313 i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f 389 (1249)
T 3sfz_A 313 IIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSIL 389 (1249)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGS
T ss_pred HHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCcc
Confidence 57899999999999999998743 57999999997665431 11224799999999999999 899999999999
Q ss_pred CCCCccChHHHHHHHHHhCCCcccchhHHHHHHHHhcccccCC---Cc-eecchHHHHHHHHHHhhc
Q 010089 76 PEDSEIRKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEEGG---DH-VKMHDMIRDMALWIANEI 138 (518)
Q Consensus 76 p~~~~i~~~~Li~~Wia~g~i~~~~~~~~~~~L~~~sli~~~~---~~-~~mHdl~~dl~~~i~~~~ 138 (518)
|+++.|+++.++.+|.+++. .+++++++|+++||++... .. |+|||++|++++..+.++
T Consensus 390 ~~~~~i~~~~~~~~~~~~~~----~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 390 QKDVKVPTKVLCVLWDLETE----EVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp CTTCCEEHHHHHHHHTCCHH----HHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred CCCCeeCHHHHHHHhCCCHH----HHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99999999999999987653 7899999999999998743 22 999999999999886654
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=4.8e-15 Score=141.68 Aligned_cols=182 Identities=23% Similarity=0.334 Sum_probs=136.8
Q ss_pred eEEecCcCCCCCCchhhhhhe--eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCC
Q 010089 144 FLVRAGVGLTDAPKIEEWEGT--LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVR 221 (518)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~--l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~ 221 (518)
.+.-.+..+..++........ +++++|.+..+++ +..+++|++|++++| .+..+| .+..+++|++|++++|.++
T Consensus 45 ~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~n~l~ 120 (308)
T 1h6u_A 45 TLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTSTQIT 120 (308)
T ss_dssp EEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTSCCC
T ss_pred EEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECCCCCCC
Confidence 333444455556555444444 8999999999887 899999999999999 677776 7999999999999999999
Q ss_pred ccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccc
Q 010089 222 GLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLN 301 (518)
Q Consensus 222 ~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 301 (518)
.+|. +..+++|++|++++|.. ..++. +..+++|++|++.+|.... .+. +..+++|+
T Consensus 121 ~~~~-l~~l~~L~~L~l~~n~l----~~~~~--l~~l~~L~~L~l~~n~l~~-------------~~~----l~~l~~L~ 176 (308)
T 1h6u_A 121 DVTP-LAGLSNLQVLYLDLNQI----TNISP--LAGLTNLQYLSIGNAQVSD-------------LTP----LANLSKLT 176 (308)
T ss_dssp CCGG-GTTCTTCCEEECCSSCC----CCCGG--GGGCTTCCEEECCSSCCCC-------------CGG----GTTCTTCC
T ss_pred Cchh-hcCCCCCCEEECCCCcc----CcCcc--ccCCCCccEEEccCCcCCC-------------Chh----hcCCCCCC
Confidence 9876 99999999999999976 67776 8899999999999987632 111 34444444
Q ss_pred eEEEEEecCccccccccCcchhhccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEec
Q 010089 302 LIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVN 381 (518)
Q Consensus 302 ~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 381 (518)
.|+++++. +..++ .+..+++|+.|++++|.+..+.+ +..+++|+.|++++
T Consensus 177 --------------------------~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 177 --------------------------TLKADDNK-ISDIS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226 (308)
T ss_dssp --------------------------EEECCSSC-CCCCG-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred --------------------------EEECCCCc-cCcCh-hhcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccC
Confidence 44444442 22222 26677888888888887776442 67788888888888
Q ss_pred CC
Q 010089 382 CS 383 (518)
Q Consensus 382 c~ 383 (518)
++
T Consensus 227 N~ 228 (308)
T 1h6u_A 227 QT 228 (308)
T ss_dssp EE
T ss_pred Ce
Confidence 73
No 84
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=2.8e-15 Score=146.18 Aligned_cols=237 Identities=16% Similarity=0.100 Sum_probs=163.2
Q ss_pred EEecCcCCCCCCchh-hhhheeecccccccccChhhhCCCCCCcEEEeecCCCcCccCc-cccCccccCE-EecCCCcCC
Q 010089 145 LVRAGVGLTDAPKIE-EWEGTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLHH-LDLSSTKVR 221 (518)
Q Consensus 145 ~~~~~~~~~~~~~~~-~~~~~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~-L~l~~~~l~ 221 (518)
+...+..++++|... .....+++++|+++.+|+..|.++++|++|+|++|...+.+|. .+.++.+|+. +.+++++++
T Consensus 14 v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~ 93 (350)
T 4ay9_X 14 FLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93 (350)
T ss_dssp EEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred EEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence 445556677777533 2233499999999999998899999999999999955566664 5788888876 555667999
Q ss_pred ccc-hhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcc-cc
Q 010089 222 GLP-QELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCL-EQ 299 (518)
Q Consensus 222 ~lp-~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~ 299 (518)
.+| ..+..+++|++|++++|.. ..+|........++..|++.++.... ...... +..+ ..
T Consensus 94 ~l~~~~f~~l~~L~~L~l~~n~l----~~~~~~~~~~~~~l~~l~l~~~~~i~-----------~l~~~~---f~~~~~~ 155 (350)
T 4ay9_X 94 YINPEAFQNLPNLQYLLISNTGI----KHLPDVHKIHSLQKVLLDIQDNINIH-----------TIERNS---FVGLSFE 155 (350)
T ss_dssp EECTTSBCCCTTCCEEEEEEECC----SSCCCCTTCCBSSCEEEEEESCTTCC-----------EECTTS---STTSBSS
T ss_pred ccCchhhhhcccccccccccccc----ccCCchhhcccchhhhhhhccccccc-----------cccccc---hhhcchh
Confidence 975 5679999999999999976 66776445666778888886643211 000011 1112 23
Q ss_pred cceEEEEEecCccccccccCcchhhccceeecccCCCCCccc-cccccccccceEEeccCcCccccccCccccccccEEE
Q 010089 300 LNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNL-LHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLH 378 (518)
Q Consensus 300 L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 378 (518)
++.+.++.+... .+.........++.|.+.+++.+..++ ..+..+++|+.|++++|.++.+++. .+.+|++|.
T Consensus 156 l~~L~L~~N~i~---~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~ 229 (350)
T 4ay9_X 156 SVILWLNKNGIQ---EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY---GLENLKKLR 229 (350)
T ss_dssp CEEEECCSSCCC---EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS---SCTTCCEEE
T ss_pred hhhhcccccccc---CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh---hhccchHhh
Confidence 444544433322 222211122457788888777777776 4567888888999888888865433 366778888
Q ss_pred EecCCCCCCCcccccCCCccEEEEecC
Q 010089 379 FVNCSNVKDLTWLVFVPNLKWLQIFNC 405 (518)
Q Consensus 379 l~~c~~l~~l~~l~~l~~L~~L~L~~c 405 (518)
+.++..++.+|.+..+++|+.+++.+.
T Consensus 230 ~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 230 ARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred hccCCCcCcCCCchhCcChhhCcCCCC
Confidence 888888888888888888888888653
No 85
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.61 E-value=3.5e-16 Score=165.13 Aligned_cols=111 Identities=14% Similarity=0.212 Sum_probs=97.2
Q ss_pred cCCCCchHHHHHHHHhcCC-CChhHHHHHHHHHhccCCcccchHHHHHHHHhhhcCCCCchhh-hhHhhhhcccCCCCcc
Q 010089 4 QCHGLPLALETVGQAMAGK-EFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSLPNDEL-RSCLLYCCLFPEDSEI 81 (518)
Q Consensus 4 ~c~GlPLai~~ig~~L~~~-~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~~sY~~L~~~~l-k~cfl~~a~fp~~~~i 81 (518)
-|+|+||||+++|+.|+.+ .+.++|+.. . .+.+..+|++||+.||+ +. |.||+|||+||+++.|
T Consensus 322 ICgGLPLALkLaGs~Lr~k~~s~eeW~~~--------~-----~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I 387 (1221)
T 1vt4_I 322 VLTTNPRRLSIIAESIRDGLATWDNWKHV--------N-----CDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHI 387 (1221)
T ss_dssp HCCCCHHHHHHHHHHHHHSCSSHHHHHHC--------S-----CHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCE
T ss_pred HhCCCHHHHHHHHHHHhCCCCCHHHHhcC--------C-----hhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCC
Confidence 4999999999999999986 367888753 0 13899999999999999 78 9999999999999999
Q ss_pred ChHHHHHHHHHhCCCcccchhHHHHHHHHhcccccCC-Cc-eecchHHHHHH
Q 010089 82 RKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEEGG-DH-VKMHDMIRDMA 131 (518)
Q Consensus 82 ~~~~Li~~Wia~g~i~~~~~~~~~~~L~~~sli~~~~-~~-~~mHdl~~dl~ 131 (518)
.++.++.+|+++| ...+.+++++|+++|||+..+ .. |+|||++++++
T Consensus 388 ~~elLa~LW~aeG---eedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 388 PTILLSLIWFDVI---KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp EHHHHHHHHCSSC---SHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred CHHHHHHHhcCCC---HHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 9999999999998 236889999999999999864 34 99999999866
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=1e-14 Score=138.12 Aligned_cols=170 Identities=22% Similarity=0.310 Sum_probs=120.6
Q ss_pred hCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCC
Q 010089 180 FQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFS 259 (518)
Q Consensus 180 ~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~ 259 (518)
+..+++|++|++++| .+..+| .++.+++|++|++++|.++.++. +.++++|++|++++|.. ..+|. +..++
T Consensus 42 ~~~l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l----~~~~~--l~~l~ 112 (291)
T 1h6t_A 42 QNELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV----KDLSS--LKDLK 112 (291)
T ss_dssp HHHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC----CCGGG--GTTCT
T ss_pred hhhcCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcC----CCChh--hccCC
Confidence 445777888888888 667776 47788888888888888888776 88888888888888865 55655 78888
Q ss_pred CCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhhccceeecccCCCCCc
Q 010089 260 KLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPL 339 (518)
Q Consensus 260 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~ 339 (518)
+|++|++.+|.... +..+..+++| +.|+++++. +..
T Consensus 113 ~L~~L~L~~n~i~~-----------------~~~l~~l~~L--------------------------~~L~l~~n~-l~~ 148 (291)
T 1h6t_A 113 KLKSLSLEHNGISD-----------------INGLVHLPQL--------------------------ESLYLGNNK-ITD 148 (291)
T ss_dssp TCCEEECTTSCCCC-----------------CGGGGGCTTC--------------------------CEEECCSSC-CCC
T ss_pred CCCEEECCCCcCCC-----------------ChhhcCCCCC--------------------------CEEEccCCc-CCc
Confidence 88888888776521 1123333333 344444432 222
Q ss_pred cccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCcccccCCCccEEEEecCc
Q 010089 340 NLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLTWLVFVPNLKWLQIFNCD 406 (518)
Q Consensus 340 ~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~L~~c~ 406 (518)
+ ..+..+++|+.|++++|.++...+ +..+++|+.|++++| .+..++.+..+++|+.|++++++
T Consensus 149 ~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 149 I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred c-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence 2 456667788888888887776444 777888888888887 66777778888888888888764
No 87
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.60 E-value=9.2e-17 Score=163.06 Aligned_cols=280 Identities=19% Similarity=0.173 Sum_probs=182.1
Q ss_pred eecccccccc----cChhhhCCCCCCcEEEeecCCCcCccCcccc-----CccccCEEecCCCcCCc-----cchhhhcC
Q 010089 165 LLLEYNHIEE----ITESFFQSLPSLRVLNLSVNHYLTELPVGIS-----SLVSLHHLDLSSTKVRG-----LPQELKAL 230 (518)
Q Consensus 165 l~l~~~~i~~----~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~-----~L~~L~~L~l~~~~l~~-----lp~~i~~L 230 (518)
+++.+|++.. ..+..+..+++|++|++++|......+..+. ...+|++|++++|.++. ++..+..+
T Consensus 90 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 169 (461)
T 1z7x_W 90 LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK 169 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC
T ss_pred EEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhC
Confidence 7888888874 2245588999999999999943222232222 35679999999998875 56777888
Q ss_pred CCCcEeeccCCccccc-ccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEec
Q 010089 231 VNLRYLNLDYTNEMCK-MCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG 309 (518)
Q Consensus 231 ~~L~~L~l~~~~~l~~-~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~ 309 (518)
++|++|++++|..-.. ...+...+....++|++|++.+|.... .........+..+++|+.++++.+.
T Consensus 170 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~-----------~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS-----------DNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT-----------THHHHHHHHHHHCTTCCEEECCSSB
T ss_pred CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH-----------HHHHHHHHHHHhCCCccEEeccCCc
Confidence 9999999999875200 011112211246799999999987632 1122234455677788887776543
Q ss_pred Ccc--cccccc-CcchhhccceeecccCCCCCc-----cccccccccccceEEeccCcCccccccCcc-----ccccccE
Q 010089 310 SRG--VENFLK-FPKLQNITQALHIKDCNSLPL-----NLLHLANMEHLQLFSIWDSNLEDWNVDCAG-----EVQKMLK 376 (518)
Q Consensus 310 ~~~--~~~l~~-~~~l~~~L~~L~l~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~-----~l~~L~~ 376 (518)
... ...+.. .......|++|++++|. +.. ++..+..+++|+.|++++|.+....+..+. ..++|++
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 317 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcccee
Confidence 221 111111 11123568999999984 444 345667789999999999977643333232 2369999
Q ss_pred EEEecCCCCCCC------cccccCCCccEEEEecCcchhhhhcccchhccccccccCCCC-ccCCCcceeeccCCcccc-
Q 010089 377 LHFVNCSNVKDL------TWLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEP-ILFSELELLVISNASNLK- 448 (518)
Q Consensus 377 L~l~~c~~l~~l------~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~L~~L~l~~~~~l~- 448 (518)
|++++|. +... ..+..+++|++|++++|. +.......... .+ ...++|++|++++| .+.
T Consensus 318 L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~----------~l~~~~~~L~~L~L~~n-~i~~ 384 (461)
T 1z7x_W 318 LWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQ----------GLGQPGSVLRVLWLADC-DVSD 384 (461)
T ss_dssp EECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHH----------HHTSTTCCCCEEECTTS-CCCH
T ss_pred eEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHH----------HHcCCCCceEEEECCCC-CCCh
Confidence 9999985 4432 245668999999999984 44432110000 11 12679999999998 555
Q ss_pred ----ccCCCCCCCCCcceEeccCCC
Q 010089 449 ----RIYRDPLPFPHLERIGISECP 469 (518)
Q Consensus 449 ----~l~~~~~~~~~L~~L~i~~C~ 469 (518)
.++.....+++|+.|++++|+
T Consensus 385 ~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 385 SSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred hhHHHHHHHHHhCCCccEEECCCCC
Confidence 455555668999999999983
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.60 E-value=3.7e-16 Score=154.67 Aligned_cols=94 Identities=18% Similarity=0.141 Sum_probs=65.4
Q ss_pred ccccChhhhCCCCCCcEEEeecCCCcCc-----cCccccCccccCEEecCCCcCCc----cchhh-------hcCCCCcE
Q 010089 172 IEEITESFFQSLPSLRVLNLSVNHYLTE-----LPVGISSLVSLHHLDLSSTKVRG----LPQEL-------KALVNLRY 235 (518)
Q Consensus 172 i~~~~~~~~~~l~~Lr~L~L~~~~~~~~-----lp~~i~~L~~L~~L~l~~~~l~~----lp~~i-------~~L~~L~~ 235 (518)
+..++.. +..+++|++|++++| .++. ++..+..+++|++|++++|.+.. +|..+ .++++|++
T Consensus 21 ~~~l~~~-l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 21 EKSVFAV-LLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 98 (386)
T ss_dssp HHTTSHH-HHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHH-HhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence 3344444 677888888888888 4432 34456778888888888875543 45544 67888888
Q ss_pred eeccCCccccccc----CCchhhhcCCCCCcEEeccccCC
Q 010089 236 LNLDYTNEMCKMC----KIPEQLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 236 L~l~~~~~l~~~~----~lp~~~~~~l~~L~~L~l~~~~~ 271 (518)
|++++|..- . .+|.. +..+++|++|++.+|..
T Consensus 99 L~Ls~n~l~---~~~~~~l~~~-l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 99 VRLSDNAFG---PTAQEPLIDF-LSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp EECCSCCCC---TTTHHHHHHH-HHHCTTCCEEECCSSCC
T ss_pred EECCCCcCC---HHHHHHHHHH-HHhCCCCCEEECcCCCC
Confidence 888888653 2 24544 67888888888888865
No 89
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.59 E-value=1e-15 Score=160.46 Aligned_cols=290 Identities=15% Similarity=0.156 Sum_probs=142.9
Q ss_pred eecccccccccC----hhhhCCCCCCcEEEeecCCCc----CccCccccCccccCEEecCCCcCCccchhhhcCCCCcEe
Q 010089 165 LLLEYNHIEEIT----ESFFQSLPSLRVLNLSVNHYL----TELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYL 236 (518)
Q Consensus 165 l~l~~~~i~~~~----~~~~~~l~~Lr~L~L~~~~~~----~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 236 (518)
+++.+|.+.... +..+..+++|++|+++++... ..++..+..+++|++|++++|.+..+|..+.++++|++|
T Consensus 169 L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L 248 (592)
T 3ogk_B 169 LLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEF 248 (592)
T ss_dssp EECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEE
T ss_pred EECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhh
Confidence 556666544331 223445666666666666221 133434455666666666666666666666666666666
Q ss_pred eccCCccccc-----------------------ccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHH
Q 010089 237 NLDYTNEMCK-----------------------MCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKE 293 (518)
Q Consensus 237 ~l~~~~~l~~-----------------------~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (518)
+++.+..... ...+|. .+..+++|++|++.+|... ......-
T Consensus 249 ~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~Ls~~~l~--------------~~~~~~~ 313 (592)
T 3ogk_B 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI-LFPFAAQIRKLDLLYALLE--------------TEDHCTL 313 (592)
T ss_dssp EECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG-GGGGGGGCCEEEETTCCCC--------------HHHHHHH
T ss_pred cccccccccchHHHHHHhhccccccccCccccchhHHHH-HHhhcCCCcEEecCCCcCC--------------HHHHHHH
Confidence 6653211000 022333 2455566666666665531 1122223
Q ss_pred hhcccccceEEEEEecCccccccccCcchhhccceeeccc----------CCCCCccc--cccccccccceEEeccCcCc
Q 010089 294 IHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKD----------CNSLPLNL--LHLANMEHLQLFSIWDSNLE 361 (518)
Q Consensus 294 l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~----------~~~~~~~~--~~l~~l~~L~~L~l~~~~l~ 361 (518)
+..+++|+.+.+. .......+.........|++|++++ |..+.... .....+++|+.|+++.+.++
T Consensus 314 ~~~~~~L~~L~L~--~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~ 391 (592)
T 3ogk_B 314 IQKCPNLEVLETR--NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT 391 (592)
T ss_dssp HTTCTTCCEEEEE--GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCC
T ss_pred HHhCcCCCEEecc--CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCcc
Confidence 4556666666665 1111111222212234577777774 54444321 22344667777777555555
Q ss_pred cccccCccc-cccccEEEEec---CCCCCCCc-------ccccCCCccEEEEecCcc-hhhhhccc---chhccccc--c
Q 010089 362 DWNVDCAGE-VQKMLKLHFVN---CSNVKDLT-------WLVFVPNLKWLQIFNCDD-MEEIISVE---KFEKLGEV--S 424 (518)
Q Consensus 362 ~~~~~~~~~-l~~L~~L~l~~---c~~l~~l~-------~l~~l~~L~~L~L~~c~~-l~~~~~~~---~~~~~~~l--~ 424 (518)
...+..+.. +++|++|++.+ |..+...| .+..+++|+.|++++|.. +....... ....++.+ +
T Consensus 392 ~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~ 471 (592)
T 3ogk_B 392 NESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG 471 (592)
T ss_dssp HHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEEC
T ss_pred HHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeecc
Confidence 433333433 66777777764 33444321 133466666666665442 11110000 00001100 0
Q ss_pred -------ccCCCCccCCCcceeeccCCccccc--cCCCCCCCCCcceEeccCCCCCcC
Q 010089 425 -------EMMGEPILFSELELLVISNASNLKR--IYRDPLPFPHLERIGISECPKLKK 473 (518)
Q Consensus 425 -------~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~i~~C~~L~~ 473 (518)
++.....++++|++|++++|+ +.. ++.....+++|+.|++++|+ ++.
T Consensus 472 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 472 YVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp SCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred CCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 011123457888888888886 432 22223457889999999886 543
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=7.2e-15 Score=139.19 Aligned_cols=170 Identities=13% Similarity=0.189 Sum_probs=131.1
Q ss_pred cccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCC
Q 010089 203 GISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNV 282 (518)
Q Consensus 203 ~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 282 (518)
.+..+.+|++|++++|.++.+|. +..+++|++|++++|.. ..++. +.++++|++|++.+|....
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l----~~~~~--l~~l~~L~~L~l~~n~l~~--------- 104 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKL----TDIKP--LANLKNLGWLFLDENKVKD--------- 104 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCC----CCCGG--GTTCTTCCEEECCSSCCCC---------
T ss_pred chhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCcc----CCCcc--cccCCCCCEEECCCCcCCC---------
Confidence 45678999999999999999974 89999999999999976 67776 8999999999999987632
Q ss_pred CcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhhccceeecccCCCCCccccccccccccceEEeccCcCcc
Q 010089 283 LSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED 362 (518)
Q Consensus 283 ~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 362 (518)
+..+..+++ |++|+++++. +..+ ..+..+++|+.|++++|.++.
T Consensus 105 --------~~~l~~l~~--------------------------L~~L~L~~n~-i~~~-~~l~~l~~L~~L~l~~n~l~~ 148 (291)
T 1h6t_A 105 --------LSSLKDLKK--------------------------LKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKITD 148 (291)
T ss_dssp --------GGGGTTCTT--------------------------CCEEECTTSC-CCCC-GGGGGCTTCCEEECCSSCCCC
T ss_pred --------ChhhccCCC--------------------------CCEEECCCCc-CCCC-hhhcCCCCCCEEEccCCcCCc
Confidence 112333333 4555555553 2333 456778899999999998886
Q ss_pred ccccCccccccccEEEEecCCCCCCCcccccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeecc
Q 010089 363 WNVDCAGEVQKMLKLHFVNCSNVKDLTWLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVIS 442 (518)
Q Consensus 363 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~ 442 (518)
+ ..+..+++|+.|++++| .+..++.+..+++|+.|+++++. ++.++ .+..+++|+.|+++
T Consensus 149 ~--~~l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~L~~N~-i~~l~----------------~l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 149 I--TVLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKNH-ISDLR----------------ALAGLKNLDVLELF 208 (291)
T ss_dssp C--GGGGGCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCBCG----------------GGTTCTTCSEEEEE
T ss_pred c--hhhccCCCCCEEEccCC-ccccchhhcCCCccCEEECCCCc-CCCCh----------------hhccCCCCCEEECc
Confidence 4 56788999999999988 66666668889999999999864 44332 34578899999998
Q ss_pred CC
Q 010089 443 NA 444 (518)
Q Consensus 443 ~~ 444 (518)
++
T Consensus 209 ~n 210 (291)
T 1h6t_A 209 SQ 210 (291)
T ss_dssp EE
T ss_pred CC
Confidence 85
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=5.3e-15 Score=141.68 Aligned_cols=200 Identities=13% Similarity=0.101 Sum_probs=128.1
Q ss_pred CCCCCcEEEeecCCCcCccCccc--cCccccCEEecCCCcCCc-cc----hhhhcCCCCcEeeccCCcccccccCCchhh
Q 010089 182 SLPSLRVLNLSVNHYLTELPVGI--SSLVSLHHLDLSSTKVRG-LP----QELKALVNLRYLNLDYTNEMCKMCKIPEQL 254 (518)
Q Consensus 182 ~l~~Lr~L~L~~~~~~~~lp~~i--~~L~~L~~L~l~~~~l~~-lp----~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~ 254 (518)
.+++|++|++++|...+..|..+ ..+.+|++|++++|.++. .| ..+..+++|++|++++|.. ..++...
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l----~~~~~~~ 164 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS----PAFSCEQ 164 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS----CCCCTTS
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc----chhhHHH
Confidence 34669999999996566777777 889999999999998876 22 3456789999999999876 5566545
Q ss_pred hcCCCCCcEEeccccCCCCccccccCCCCcchhhhhH--HHhhcccccceEEEEEecCccccccccCcchhhccceeecc
Q 010089 255 ISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLM--KEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIK 332 (518)
Q Consensus 255 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~ 332 (518)
++.+++|++|++++|.... ..... .....+++ |++|+++
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~-------------~~~~~~~~~~~~l~~--------------------------L~~L~Ls 205 (310)
T 4glp_A 165 VRAFPALTSLDLSDNPGLG-------------ERGLMAALCPHKFPA--------------------------IQNLALR 205 (310)
T ss_dssp CCCCTTCCEEECCSCTTCH-------------HHHHHTTSCTTSSCC--------------------------CCSCBCC
T ss_pred hccCCCCCEEECCCCCCcc-------------chhhhHHHhhhcCCC--------------------------CCEEECC
Confidence 8899999999999886521 10000 00122333 4455555
Q ss_pred cCCCCCcccc----ccccccccceEEeccCcCccccccCcccc---ccccEEEEecCCCCCCCcccccCCCccEEEEecC
Q 010089 333 DCNSLPLNLL----HLANMEHLQLFSIWDSNLEDWNVDCAGEV---QKMLKLHFVNCSNVKDLTWLVFVPNLKWLQIFNC 405 (518)
Q Consensus 333 ~~~~~~~~~~----~l~~l~~L~~L~l~~~~l~~~~~~~~~~l---~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~L~~c 405 (518)
+|. +..++. .+..+++|+.|++++|.+....|..+..+ ++|++|+++++ .++.+|... +++|+.|+++++
T Consensus 206 ~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~L~~L~Ls~N 282 (310)
T 4glp_A 206 NTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGL-PAKLRVLDLSSN 282 (310)
T ss_dssp SSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCC-CSCCSCEECCSC
T ss_pred CCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhh-cCCCCEEECCCC
Confidence 543 232221 23456777777777776666545444444 57777777776 444555211 367777777775
Q ss_pred cchhhhhcccchhccccccccCCCCccCCCcceeeccCC
Q 010089 406 DDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNA 444 (518)
Q Consensus 406 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~ 444 (518)
. ++.++ ....+++|+.|++++.
T Consensus 283 ~-l~~~~----------------~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 283 R-LNRAP----------------QPDELPEVDNLTLDGN 304 (310)
T ss_dssp C-CCSCC----------------CTTSCCCCSCEECSST
T ss_pred c-CCCCc----------------hhhhCCCccEEECcCC
Confidence 3 33321 2346677777777764
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=2.6e-14 Score=132.40 Aligned_cols=100 Identities=15% Similarity=0.188 Sum_probs=68.6
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccch-hhhcCCCCcEeeccCCcc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQ-ELKALVNLRYLNLDYTNE 243 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~ 243 (518)
+++.++.+..+|.. +. +.+++|++++|......|..+.++++|++|++++|.++.++. .+.++++|++|++++|..
T Consensus 19 l~~~~~~l~~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 95 (251)
T 3m19_A 19 VDCQGKSLDSVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95 (251)
T ss_dssp EECTTCCCSSCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EecCCCCccccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc
Confidence 66677777777765 22 577788888773333334457777888888888877777554 367777888888877765
Q ss_pred cccccCCchhhhcCCCCCcEEeccccCC
Q 010089 244 MCKMCKIPEQLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 244 l~~~~~lp~~~~~~l~~L~~L~l~~~~~ 271 (518)
..+|...+..+++|++|++.+|..
T Consensus 96 ----~~~~~~~~~~l~~L~~L~L~~N~l 119 (251)
T 3m19_A 96 ----ASLPLGVFDHLTQLDKLYLGGNQL 119 (251)
T ss_dssp ----CCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ----cccChhHhcccCCCCEEEcCCCcC
Confidence 566655567777777777776654
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.57 E-value=4.1e-16 Score=152.88 Aligned_cols=256 Identities=13% Similarity=0.089 Sum_probs=148.3
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccC-----ccccCcc-ccCEEecCCCcCCcc-chhhhcC-----CC
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-----VGISSLV-SLHHLDLSSTKVRGL-PQELKAL-----VN 232 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp-----~~i~~L~-~L~~L~l~~~~l~~l-p~~i~~L-----~~ 232 (518)
..++.|++....+.++...++|++|++++| .++..+ ..+..++ +|++|++++|.++.. +..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 356677888777777777777999999999 566554 5677788 899999999988874 5556654 89
Q ss_pred CcEeeccCCcccccccCCchh---hhcCC-CCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcc-cccceEEEEE
Q 010089 233 LRYLNLDYTNEMCKMCKIPEQ---LISSF-SKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCL-EQLNLIALSL 307 (518)
Q Consensus 233 L~~L~l~~~~~l~~~~~lp~~---~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~~l~~~~ 307 (518)
|++|++++|..- ...+.. .+..+ ++|++|++++|..... ........+..+ ++|+.++++.
T Consensus 82 L~~L~Ls~n~l~---~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-----------~~~~l~~~l~~~~~~L~~L~Ls~ 147 (362)
T 3goz_A 82 VTSLNLSGNFLS---YKSSDELVKTLAAIPFTITVLDLGWNDFSSK-----------SSSEFKQAFSNLPASITSLNLRG 147 (362)
T ss_dssp CCEEECCSSCGG---GSCHHHHHHHHHTSCTTCCEEECCSSCGGGS-----------CHHHHHHHHTTSCTTCCEEECTT
T ss_pred ccEEECcCCcCC---hHHHHHHHHHHHhCCCCccEEECcCCcCCcH-----------HHHHHHHHHHhCCCceeEEEccC
Confidence 999999999763 223322 13344 7899999998876320 111122223332 4666666654
Q ss_pred ecCcc--ccccccC-cchhhccceeecccCCCCCccc----cccccc-cccceEEeccCcCcccc----ccCccc-cccc
Q 010089 308 RGSRG--VENFLKF-PKLQNITQALHIKDCNSLPLNL----LHLANM-EHLQLFSIWDSNLEDWN----VDCAGE-VQKM 374 (518)
Q Consensus 308 ~~~~~--~~~l~~~-~~l~~~L~~L~l~~~~~~~~~~----~~l~~l-~~L~~L~l~~~~l~~~~----~~~~~~-l~~L 374 (518)
+.... ...+... ......|++|++++|.-....+ ..+... ++|+.|++++|.+.... +..+.. .++|
T Consensus 148 N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L 227 (362)
T 3goz_A 148 NDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTC
T ss_pred CcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCc
Confidence 33221 1111111 1112357788887764211111 223334 47888888887666421 222333 3478
Q ss_pred cEEEEecCCCCCCCc------ccccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCC
Q 010089 375 LKLHFVNCSNVKDLT------WLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNA 444 (518)
Q Consensus 375 ~~L~l~~c~~l~~l~------~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~ 444 (518)
++|++++| .+...+ .+..+++|+.|++++|. +..+.... . ..+......+++|+.|+++++
T Consensus 228 ~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~-~------~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 228 VSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQ-C------KALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp CEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHH-H------HHHHTTSTTCCEEEEECTTSC
T ss_pred eEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHH-H------HHHHHHhccCCceEEEecCCC
Confidence 88888776 344432 13456778888887764 11111000 0 011124456677777777765
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.57 E-value=1e-15 Score=151.53 Aligned_cols=229 Identities=15% Similarity=0.123 Sum_probs=140.9
Q ss_pred eecccccccccCh----hhhCCCCCCcEEEeecCCCcC----ccCccc-------cCccccCEEecCCCcCCc-----cc
Q 010089 165 LLLEYNHIEEITE----SFFQSLPSLRVLNLSVNHYLT----ELPVGI-------SSLVSLHHLDLSSTKVRG-----LP 224 (518)
Q Consensus 165 l~l~~~~i~~~~~----~~~~~l~~Lr~L~L~~~~~~~----~lp~~i-------~~L~~L~~L~l~~~~l~~-----lp 224 (518)
+++.+|++..... ..+..+++|++|++++| .+. .+|..+ ..+++|++|++++|.+.. +|
T Consensus 37 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 115 (386)
T 2ca6_A 37 IVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI 115 (386)
T ss_dssp EECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHH
T ss_pred EECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHH
Confidence 8888888875432 23778999999999997 333 345444 688999999999999887 88
Q ss_pred hhhhcCCCCcEeeccCCccccc-ccCCchhhhcCC---------CCCcEEeccccCCCCccccccCCCCcchhhhhHHHh
Q 010089 225 QELKALVNLRYLNLDYTNEMCK-MCKIPEQLISSF---------SKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEI 294 (518)
Q Consensus 225 ~~i~~L~~L~~L~l~~~~~l~~-~~~lp~~~~~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 294 (518)
..+.++++|++|++++|..-.. ...++.. +..+ ++|++|++.+|.... ...+.....+
T Consensus 116 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~l~~~~~~~~~~~L~~L~L~~n~l~~-----------~~~~~l~~~l 183 (386)
T 2ca6_A 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARA-LQELAVNKKAKNAPPLRSIICGRNRLEN-----------GSMKEWAKTF 183 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCHHHHHHHHHHH-HHHHHHHHHHHTCCCCCEEECCSSCCTG-----------GGHHHHHHHH
T ss_pred HHHHhCCCCCEEECcCCCCCHHHHHHHHHH-HHHHhhhhhcccCCCCcEEECCCCCCCc-----------HHHHHHHHHH
Confidence 8999999999999999975200 0112222 3334 899999999987631 1222223345
Q ss_pred hcccccceEEEEEecCccccccccCcchhhccceeecccCCCCCccc-cccccccccceEEeccCcCc----cccccCcc
Q 010089 295 HCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNL-LHLANMEHLQLFSIWDSNLE----DWNVDCAG 369 (518)
Q Consensus 295 ~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~----~~~~~~~~ 369 (518)
..+++|+.+++..+...... +..+. ..+..+++|+.|++++|.++ ...+..+.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g----------------------~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~ 241 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEG----------------------IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHH----------------------HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred HhCCCcCEEECcCCCCCHhH----------------------HHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc
Confidence 55555555544432211000 00011 25556667777777777653 22344556
Q ss_pred ccccccEEEEecCCCCCCC-----c-cc--ccCCCccEEEEecCcchh----hhhcccchhccccccccCCCC-ccCCCc
Q 010089 370 EVQKMLKLHFVNCSNVKDL-----T-WL--VFVPNLKWLQIFNCDDME----EIISVEKFEKLGEVSEMMGEP-ILFSEL 436 (518)
Q Consensus 370 ~l~~L~~L~l~~c~~l~~l-----~-~l--~~l~~L~~L~L~~c~~l~----~~~~~~~~~~~~~l~~~~~~~-~~~~~L 436 (518)
.+++|++|+|++|. +... + .+ +.+++|++|+|++|..-. .++. .+ ..+++|
T Consensus 242 ~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~---------------~l~~~l~~L 305 (386)
T 2ca6_A 242 SWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT---------------VIDEKMPDL 305 (386)
T ss_dssp GCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH---------------HHHHHCTTC
T ss_pred cCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH---------------HHHhcCCCc
Confidence 66777777777763 3322 1 23 236777777777765322 1322 22 346777
Q ss_pred ceeeccCC
Q 010089 437 ELLVISNA 444 (518)
Q Consensus 437 ~~L~l~~~ 444 (518)
++|+++++
T Consensus 306 ~~L~l~~N 313 (386)
T 2ca6_A 306 LFLELNGN 313 (386)
T ss_dssp CEEECTTS
T ss_pred eEEEccCC
Confidence 77777775
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=6.9e-15 Score=152.76 Aligned_cols=182 Identities=21% Similarity=0.297 Sum_probs=122.3
Q ss_pred cccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCccccc
Q 010089 167 LEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCK 246 (518)
Q Consensus 167 l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~ 246 (518)
+..+.+..+.. +..+++|+.|++++| .+..+| .++.+++|++|+|++|.+..+|. +..+++|+.|++++|..
T Consensus 28 l~~~~i~~~~~--~~~L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l--- 99 (605)
T 1m9s_A 28 LKKKSVTDAVT--QNELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI--- 99 (605)
T ss_dssp TTCSCTTSEEC--HHHHTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC---
T ss_pred ccCCCcccccc--hhcCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC---
Confidence 34444444333 456777888888888 667776 57888888888888888888776 78888888888888865
Q ss_pred ccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhhcc
Q 010089 247 MCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNIT 326 (518)
Q Consensus 247 ~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L 326 (518)
..+|. +..+++|++|++++|.... +..+..+++|+
T Consensus 100 -~~l~~--l~~l~~L~~L~Ls~N~l~~-----------------l~~l~~l~~L~------------------------- 134 (605)
T 1m9s_A 100 -KDLSS--LKDLKKLKSLSLEHNGISD-----------------INGLVHLPQLE------------------------- 134 (605)
T ss_dssp -CCCTT--STTCTTCCEEECTTSCCCC-----------------CGGGGGCTTCS-------------------------
T ss_pred -CCChh--hccCCCCCEEEecCCCCCC-----------------CccccCCCccC-------------------------
Confidence 55664 7888888888888776521 11233344443
Q ss_pred ceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCcccccCCCccEEEEecCc
Q 010089 327 QALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLTWLVFVPNLKWLQIFNCD 406 (518)
Q Consensus 327 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~L~~c~ 406 (518)
.|++++|. +..+ ..+..+++|+.|++++|.+....+ +..+++|+.|+|++| .+..++.+..+++|+.|+|++|+
T Consensus 135 -~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 135 -SLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp -EEECCSSC-CCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCSEE
T ss_pred -EEECCCCc-cCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC-CCCCChHHccCCCCCEEEccCCc
Confidence 34444332 2222 355667777888887777765444 667778888888777 55666777778888888887765
Q ss_pred c
Q 010089 407 D 407 (518)
Q Consensus 407 ~ 407 (518)
.
T Consensus 209 l 209 (605)
T 1m9s_A 209 C 209 (605)
T ss_dssp E
T ss_pred C
Confidence 3
No 96
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.56 E-value=4e-16 Score=158.35 Aligned_cols=292 Identities=18% Similarity=0.157 Sum_probs=146.0
Q ss_pred eeccccccccc----ChhhhCCCCCCcEEEeecCCCcCc-cCccc-cCcc----ccCEEecCCCcCC-----ccchhhhc
Q 010089 165 LLLEYNHIEEI----TESFFQSLPSLRVLNLSVNHYLTE-LPVGI-SSLV----SLHHLDLSSTKVR-----GLPQELKA 229 (518)
Q Consensus 165 l~l~~~~i~~~----~~~~~~~l~~Lr~L~L~~~~~~~~-lp~~i-~~L~----~L~~L~l~~~~l~-----~lp~~i~~ 229 (518)
+++.+|++... .+..+..+++|++|++++|. +.. .+..+ ..+. +|++|++++|.++ .+|..+.+
T Consensus 33 L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 111 (461)
T 1z7x_W 33 VRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT 111 (461)
T ss_dssp EEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTS
T ss_pred EEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHcc
Confidence 66666666522 12336667777777777773 332 22222 2233 5777777777776 35667777
Q ss_pred CCCCcEeeccCCccccc-ccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEe
Q 010089 230 LVNLRYLNLDYTNEMCK-MCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLR 308 (518)
Q Consensus 230 L~~L~~L~l~~~~~l~~-~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~ 308 (518)
+++|++|++++|..-.. ...+........++|++|++.+|.... .........+..+++|+.++++.+
T Consensus 112 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~-----------~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA-----------ASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG-----------GGHHHHHHHHHHCTTCCEEECCSS
T ss_pred CCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH-----------HHHHHHHHHHhhCCCCCEEECcCC
Confidence 77777777777754200 011111212235567777777775521 111122333445566666665543
Q ss_pred cCcc--ccccccC-cchhhccceeecccCCCCCc----cccccccccccceEEeccCcCcccc-----ccCccccccccE
Q 010089 309 GSRG--VENFLKF-PKLQNITQALHIKDCNSLPL----NLLHLANMEHLQLFSIWDSNLEDWN-----VDCAGEVQKMLK 376 (518)
Q Consensus 309 ~~~~--~~~l~~~-~~l~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~~~~-----~~~~~~l~~L~~ 376 (518)
.... ...+... ......|++|++++|.--.. ++..+..+++|+.|++++|.+.... +.....+++|++
T Consensus 181 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~ 260 (461)
T 1z7x_W 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260 (461)
T ss_dssp BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceE
Confidence 3211 0111100 00012567777777642221 2344555677777777777554321 112224566777
Q ss_pred EEEecCCCCCC-----Cc-ccccCCCccEEEEecCcchhhhhcccch-------hccccc--c----------ccCCCCc
Q 010089 377 LHFVNCSNVKD-----LT-WLVFVPNLKWLQIFNCDDMEEIISVEKF-------EKLGEV--S----------EMMGEPI 431 (518)
Q Consensus 377 L~l~~c~~l~~-----l~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~-------~~~~~l--~----------~~~~~~~ 431 (518)
|++++| .+.. ++ .+..+++|++|+++++. +......... ..+..+ + .++..+.
T Consensus 261 L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 338 (461)
T 1z7x_W 261 LWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA 338 (461)
T ss_dssp EECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred EECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh
Confidence 777766 3333 22 34446667777776653 2211110000 000000 0 0111233
Q ss_pred cCCCcceeeccCCccccccCC-----CC-CCCCCcceEeccCCCCCc
Q 010089 432 LFSELELLVISNASNLKRIYR-----DP-LPFPHLERIGISECPKLK 472 (518)
Q Consensus 432 ~~~~L~~L~l~~~~~l~~l~~-----~~-~~~~~L~~L~i~~C~~L~ 472 (518)
.+++|++|+++++ .+..... .. ...++|+.|++++| +++
T Consensus 339 ~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~ 383 (461)
T 1z7x_W 339 QNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVS 383 (461)
T ss_dssp HCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCC
T ss_pred hCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCC
Confidence 4577888888776 4443211 11 12578888888888 555
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=1.3e-13 Score=127.54 Aligned_cols=123 Identities=23% Similarity=0.261 Sum_probs=98.5
Q ss_pred EEecCcCCCCCCchh-hhhheeecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCcc
Q 010089 145 LVRAGVGLTDAPKIE-EWEGTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGL 223 (518)
Q Consensus 145 ~~~~~~~~~~~~~~~-~~~~~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~l 223 (518)
+...+..+..+|... .....+++.+|++..+++..|.++++|++|++++|......|..+..+++|++|++++|.++.+
T Consensus 19 l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 98 (251)
T 3m19_A 19 VDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98 (251)
T ss_dssp EECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred EecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc
Confidence 344455555665422 2223499999999999988899999999999999944344455689999999999999999998
Q ss_pred ch-hhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCC
Q 010089 224 PQ-ELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 224 p~-~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~ 271 (518)
|. .+..+++|++|++++|.. ..+|.+.+..+++|++|++.+|..
T Consensus 99 ~~~~~~~l~~L~~L~L~~N~l----~~~~~~~~~~l~~L~~L~Ls~N~l 143 (251)
T 3m19_A 99 PLGVFDHLTQLDKLYLGGNQL----KSLPSGVFDRLTKLKELRLNTNQL 143 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ChhHhcccCCCCEEEcCCCcC----CCcChhHhccCCcccEEECcCCcC
Confidence 75 468999999999999976 778877678899999999988765
No 98
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.52 E-value=5.7e-15 Score=154.79 Aligned_cols=129 Identities=15% Similarity=0.094 Sum_probs=77.1
Q ss_pred hccceeeccc---CCCCCcc------ccccccccccceEEeccC--cCccccccCcc-ccccccEEEEecCCCCCC--Cc
Q 010089 324 NITQALHIKD---CNSLPLN------LLHLANMEHLQLFSIWDS--NLEDWNVDCAG-EVQKMLKLHFVNCSNVKD--LT 389 (518)
Q Consensus 324 ~~L~~L~l~~---~~~~~~~------~~~l~~l~~L~~L~l~~~--~l~~~~~~~~~-~l~~L~~L~l~~c~~l~~--l~ 389 (518)
..|+.|++.+ |+.++.. ...+..+++|+.|+++.| .+....+..+. .+++|+.|++++|. +.. ++
T Consensus 403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~ 481 (592)
T 3ogk_B 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLM 481 (592)
T ss_dssp CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHH
T ss_pred CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHH
Confidence 3567777763 3344432 123455778888888655 24432333333 37788888888774 432 23
Q ss_pred -ccccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCC--CCCCCCcceEecc
Q 010089 390 -WLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRD--PLPFPHLERIGIS 466 (518)
Q Consensus 390 -~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~--~~~~~~L~~L~i~ 466 (518)
.+..+++|++|+|++|. +..... ......+++|+.|++++|. +...... ...+|.|....+.
T Consensus 482 ~~~~~~~~L~~L~l~~n~-l~~~~~-------------~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCC-FSERAI-------------AAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp HHHTCCTTCCEEEEESCC-CBHHHH-------------HHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEEC
T ss_pred HHHhcCcccCeeeccCCC-CcHHHH-------------HHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEec
Confidence 34668999999999987 332110 0023468999999999996 5443211 2356777666665
Q ss_pred CC
Q 010089 467 EC 468 (518)
Q Consensus 467 ~C 468 (518)
..
T Consensus 547 ~~ 548 (592)
T 3ogk_B 547 SR 548 (592)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=1.3e-13 Score=128.30 Aligned_cols=95 Identities=20% Similarity=0.254 Sum_probs=66.8
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCccc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEM 244 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l 244 (518)
+.+..+.+..++. +..+++|++|++++| .+..+| .++.+++|++|++++|.++.+|. +.++++|++|++++|..
T Consensus 24 l~l~~~~i~~~~~--~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l- 97 (263)
T 1xeu_A 24 QNLGKQSVTDLVS--QKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRL- 97 (263)
T ss_dssp HHHTCSCTTSEEC--HHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCC-
T ss_pred HHhcCCCcccccc--hhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCcc-
Confidence 4556666666652 667777788888877 666676 67777778888887777777776 77777788888877765
Q ss_pred ccccCCchhhhcCCCCCcEEeccccCC
Q 010089 245 CKMCKIPEQLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 245 ~~~~~lp~~~~~~l~~L~~L~l~~~~~ 271 (518)
..+|. +.. ++|++|++.+|..
T Consensus 98 ---~~l~~--~~~-~~L~~L~L~~N~l 118 (263)
T 1xeu_A 98 ---KNLNG--IPS-ACLSRLFLDNNEL 118 (263)
T ss_dssp ---SCCTT--CCC-SSCCEEECCSSCC
T ss_pred ---CCcCc--ccc-CcccEEEccCCcc
Confidence 55665 333 7777777776654
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.48 E-value=4.1e-13 Score=120.46 Aligned_cols=160 Identities=18% Similarity=0.290 Sum_probs=94.2
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCcc-ccCccccCEEecCCCcCCccchh-hhcCCCCcEeeccCCc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSSTKVRGLPQE-LKALVNLRYLNLDYTN 242 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 242 (518)
+...++.+..+|.. -.++|++|++++| .+..+|.. ++.+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 12 v~c~~~~l~~~p~~---~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 12 VECYSQGRTSVPTG---IPAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EECCSSCCSSCCSC---CCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEecCCCccCCCCC---CCCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 45555566666543 2346677777776 44444433 56666777777776666666544 4566666777766665
Q ss_pred ccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcch
Q 010089 243 EMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKL 322 (518)
Q Consensus 243 ~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l 322 (518)
. ..+|...+..+++|++|++.+|...
T Consensus 88 l----~~~~~~~~~~l~~L~~L~L~~N~l~-------------------------------------------------- 113 (208)
T 2o6s_A 88 L----QSLPNGVFDKLTQLKELALNTNQLQ-------------------------------------------------- 113 (208)
T ss_dssp C----CCCCTTTTTTCTTCCEEECCSSCCC--------------------------------------------------
T ss_pred C----CccCHhHhcCccCCCEEEcCCCcCc--------------------------------------------------
Confidence 4 4555544556666666666554331
Q ss_pred hhccceeecccCCCCCccc-cccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCcccccCCCccEEE
Q 010089 323 QNITQALHIKDCNSLPLNL-LHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLTWLVFVPNLKWLQ 401 (518)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~ 401 (518)
.++ ..+..+++|+.|++++|.++.+.+..+..+++|+.|++++++ +...+++|+.|+
T Consensus 114 ----------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~------~~~~~~~l~~L~ 171 (208)
T 2o6s_A 114 ----------------SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP------WDCTCPGIRYLS 171 (208)
T ss_dssp ----------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC------BCCCTTTTHHHH
T ss_pred ----------------ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC------eecCCCCHHHHH
Confidence 000 123456677788888777776555556667777777777662 223455566555
Q ss_pred Eec
Q 010089 402 IFN 404 (518)
Q Consensus 402 L~~ 404 (518)
++.
T Consensus 172 ~~~ 174 (208)
T 2o6s_A 172 EWI 174 (208)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.47 E-value=1.4e-13 Score=122.36 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=38.3
Q ss_pred ccccccccceEEeccCc-CccccccCccccccccEEEEecCCCCCCCcccccCCCccEEEEecC
Q 010089 343 HLANMEHLQLFSIWDSN-LEDWNVDCAGEVQKMLKLHFVNCSNVKDLTWLVFVPNLKWLQIFNC 405 (518)
Q Consensus 343 ~l~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~L~~c 405 (518)
.+..+++|+.|++++|. +..+ + .+..+++|+.|++++| .+..++.+..+++|++|+++++
T Consensus 131 ~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n-~i~~~~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 131 KINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFD-GVHDYRGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp HHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTB-CCCCCTTGGGCSSCCEEEECBC
T ss_pred HHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCC-CCcChHHhccCCCCCEEEeeCc
Confidence 34455667777777774 6543 2 4666777777777766 4555556666777777777664
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.47 E-value=6.3e-14 Score=137.24 Aligned_cols=225 Identities=15% Similarity=0.161 Sum_probs=153.3
Q ss_pred eecccccccccCh----hhhCCCC-CCcEEEeecCCCcCccCccccCc-----cccCEEecCCCcCCccch-h----hhc
Q 010089 165 LLLEYNHIEEITE----SFFQSLP-SLRVLNLSVNHYLTELPVGISSL-----VSLHHLDLSSTKVRGLPQ-E----LKA 229 (518)
Q Consensus 165 l~l~~~~i~~~~~----~~~~~l~-~Lr~L~L~~~~~~~~lp~~i~~L-----~~L~~L~l~~~~l~~lp~-~----i~~ 229 (518)
+++++|.+...+. ..|..++ +|++|++++|......+..+..+ ++|++|++++|.++..+. . +..
T Consensus 27 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 106 (362)
T 3goz_A 27 LDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAA 106 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred EEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHh
Confidence 8999999999887 6688898 99999999994444446666665 999999999999987443 3 455
Q ss_pred C-CCCcEeeccCCcccccccCCchhh----hcC-CCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhccc-ccce
Q 010089 230 L-VNLRYLNLDYTNEMCKMCKIPEQL----ISS-FSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLE-QLNL 302 (518)
Q Consensus 230 L-~~L~~L~l~~~~~l~~~~~lp~~~----~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~~ 302 (518)
+ ++|++|++++|.. ...+... +.. .++|++|++++|.... .........+..+. +|+.
T Consensus 107 ~~~~L~~L~Ls~N~l----~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-----------~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 107 IPFTITVLDLGWNDF----SSKSSSEFKQAFSNLPASITSLNLRGNDLGI-----------KSSDELIQILAAIPANVNS 171 (362)
T ss_dssp SCTTCCEEECCSSCG----GGSCHHHHHHHHTTSCTTCCEEECTTSCGGG-----------SCHHHHHHHHHTSCTTCCE
T ss_pred CCCCccEEECcCCcC----CcHHHHHHHHHHHhCCCceeEEEccCCcCCH-----------HHHHHHHHHHhcCCccccE
Confidence 5 8999999999976 4444322 334 3699999999987631 11222334445554 7888
Q ss_pred EEEEEecCccc--cccccCcc-hhhccceeecccCCCCCc-----ccccccc-ccccceEEeccCcCccccc----cCcc
Q 010089 303 IALSLRGSRGV--ENFLKFPK-LQNITQALHIKDCNSLPL-----NLLHLAN-MEHLQLFSIWDSNLEDWNV----DCAG 369 (518)
Q Consensus 303 l~~~~~~~~~~--~~l~~~~~-l~~~L~~L~l~~~~~~~~-----~~~~l~~-l~~L~~L~l~~~~l~~~~~----~~~~ 369 (518)
++++.+..... ..+..... ....|++|+++++. +.. ++..+.. .++|+.|++++|.+....+ ..+.
T Consensus 172 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~ 250 (362)
T 3goz_A 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKD 250 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTT
T ss_pred eeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHh
Confidence 87765443221 11111111 11478999999985 333 3344444 4599999999998776433 3356
Q ss_pred ccccccEEEEecCCCCCCC--------c-ccccCCCccEEEEecCc
Q 010089 370 EVQKMLKLHFVNCSNVKDL--------T-WLVFVPNLKWLQIFNCD 406 (518)
Q Consensus 370 ~l~~L~~L~l~~c~~l~~l--------~-~l~~l~~L~~L~L~~c~ 406 (518)
.+++|++|++++|. +..+ + .+..+++|+.|+++++.
T Consensus 251 ~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 251 SLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred cCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 78899999999984 1211 1 34567888899998865
No 103
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.47 E-value=2.9e-14 Score=149.19 Aligned_cols=127 Identities=17% Similarity=0.305 Sum_probs=105.7
Q ss_pred CcccCCCCchHHHHHHHHhcCCCChhHHHHHHHHHhccCCc-c----cchHHHHHHHHhhhcCCCCchhhhhHhhhhccc
Q 010089 1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASK-F----EDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLF 75 (518)
Q Consensus 1 I~~~c~GlPLai~~ig~~L~~~~~~~~W~~~l~~l~~~~~~-~----~~~~~~i~~~L~~sY~~L~~~~lk~cfl~~a~f 75 (518)
|+++|+|+||||+.+|+.|+.+ ...|+.+++.+....+. . ......+..++..||+.||+ +.|.||+++|+|
T Consensus 313 i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f 389 (591)
T 1z6t_A 313 IIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSIL 389 (591)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGC
T ss_pred HHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHcccc
Confidence 5789999999999999999874 35799999988765432 1 11224799999999999999 899999999999
Q ss_pred CCCCccChHHHHHHHHHhCCCcccchhHHHHHHHHhcccccCC---Cc-eecchHHHHHHHHH
Q 010089 76 PEDSEIRKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEEGG---DH-VKMHDMIRDMALWI 134 (518)
Q Consensus 76 p~~~~i~~~~Li~~Wia~g~i~~~~~~~~~~~L~~~sli~~~~---~~-~~mHdl~~dl~~~i 134 (518)
|+|+.|+.+.++.+|.+++. .+.+++++|+++|||+... .. |+||++++++++..
T Consensus 390 ~~~~~i~~~~l~~l~~~~~~----~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 390 QKDVKVPTKVLCILWDMETE----EVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp CTTCCEEHHHHHHHHTCCHH----HHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred CCCCccCHHHHHHHhccCHH----HHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 99999999999999976432 5788999999999998632 23 99999999999876
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=4.4e-13 Score=119.14 Aligned_cols=151 Identities=17% Similarity=0.281 Sum_probs=95.0
Q ss_pred CCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCC
Q 010089 181 QSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSK 260 (518)
Q Consensus 181 ~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~ 260 (518)
..+++|++|++++| .+..+| .+..+++|++|++++|.++.++ .+..+++|++|++++|..- ...|.. ++.+++
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~---~~~~~~-l~~l~~ 113 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVT---SDKIPN-LSGLTS 113 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCB---GGGSCC-CTTCTT
T ss_pred hhcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccC---cccChh-hcCCCC
Confidence 45667777777777 566677 6777777777777777666664 5777777777777777653 223443 677777
Q ss_pred CcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhhccceeecccCCCCCcc
Q 010089 261 LQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLN 340 (518)
Q Consensus 261 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~ 340 (518)
|++|++++|... ...+..+..+++|+ +|++++|..+..+
T Consensus 114 L~~L~Ls~n~i~---------------~~~~~~l~~l~~L~--------------------------~L~L~~n~~i~~~ 152 (197)
T 4ezg_A 114 LTLLDISHSAHD---------------DSILTKINTLPKVN--------------------------SIDLSYNGAITDI 152 (197)
T ss_dssp CCEEECCSSBCB---------------GGGHHHHTTCSSCC--------------------------EEECCSCTBCCCC
T ss_pred CCEEEecCCccC---------------cHhHHHHhhCCCCC--------------------------EEEccCCCCcccc
Confidence 777777777652 11122333333333 3444443323333
Q ss_pred ccccccccccceEEeccCcCccccccCccccccccEEEEecC
Q 010089 341 LLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNC 382 (518)
Q Consensus 341 ~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c 382 (518)
+ .+..+++|+.|++++|.++.+. .+..+++|++|+++++
T Consensus 153 ~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 153 M-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp G-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC
T ss_pred H-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCc
Confidence 2 4566777788888777766532 5667778888888765
No 105
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=132.39 Aligned_cols=198 Identities=14% Similarity=0.073 Sum_probs=139.3
Q ss_pred eecccccccccChhhh--CCCCCCcEEEeecCCCcCccC----ccccCccccCEEecCCCcCCccc-hhhhcCCCCcEee
Q 010089 165 LLLEYNHIEEITESFF--QSLPSLRVLNLSVNHYLTELP----VGISSLVSLHHLDLSSTKVRGLP-QELKALVNLRYLN 237 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~--~~l~~Lr~L~L~~~~~~~~lp----~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~ 237 (518)
+++.+|++....+..+ ..+++|++|++++|......| ..+..+++|++|++++|.+..+| ..++.+++|++|+
T Consensus 96 L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 175 (310)
T 4glp_A 96 LTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLD 175 (310)
T ss_dssp EEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEE
T ss_pred EEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEE
Confidence 8889999887655546 899999999999994433333 34567999999999999998865 6788999999999
Q ss_pred ccCCcccccccCCchh-hhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHH-hhcccccceEEEEEecCccccc
Q 010089 238 LDYTNEMCKMCKIPEQ-LISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKE-IHCLEQLNLIALSLRGSRGVEN 315 (518)
Q Consensus 238 l~~~~~l~~~~~lp~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~~l~~~~~~~~~~~~ 315 (518)
+++|..... ..++.. .+..+++|++|++++|.... .+..... +..+++|
T Consensus 176 Ls~N~l~~~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------l~~~~~~l~~~l~~L--------------- 226 (310)
T 4glp_A 176 LSDNPGLGE-RGLMAALCPHKFPAIQNLALRNTGMET-------------PTGVCAALAAAGVQP--------------- 226 (310)
T ss_dssp CCSCTTCHH-HHHHTTSCTTSSCCCCSCBCCSSCCCC-------------HHHHHHHHHHHTCCC---------------
T ss_pred CCCCCCccc-hhhhHHHhhhcCCCCCEEECCCCCCCc-------------hHHHHHHHHhcCCCC---------------
Confidence 999975310 012221 14689999999999987732 2222221 2333444
Q ss_pred cccCcchhhccceeecccCCCCCcccccccc---ccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCcccc
Q 010089 316 FLKFPKLQNITQALHIKDCNSLPLNLLHLAN---MEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLTWLV 392 (518)
Q Consensus 316 l~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~---l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~ 392 (518)
++|+++++.-....+..+.. +++|+.|++++|.++.+ |..+. ++|+.|+++++ .+..+|...
T Consensus 227 -----------~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~--~~L~~L~Ls~N-~l~~~~~~~ 291 (310)
T 4glp_A 227 -----------HSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGLP--AKLRVLDLSSN-RLNRAPQPD 291 (310)
T ss_dssp -----------SSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCCC--SCCSCEECCSC-CCCSCCCTT
T ss_pred -----------CEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhhc--CCCCEEECCCC-cCCCCchhh
Confidence 44555554322222333333 37999999999988864 55443 79999999988 667777678
Q ss_pred cCCCccEEEEecCc
Q 010089 393 FVPNLKWLQIFNCD 406 (518)
Q Consensus 393 ~l~~L~~L~L~~c~ 406 (518)
.+++|+.|++++++
T Consensus 292 ~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 292 ELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCCCSCEECSSTT
T ss_pred hCCCccEEECcCCC
Confidence 89999999999865
No 106
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.45 E-value=3.2e-14 Score=149.11 Aligned_cols=58 Identities=16% Similarity=0.088 Sum_probs=33.9
Q ss_pred hhhccceeecccCCCCCccc--cccccccccceEEeccCcCccc-cccCccccccccEEEEec
Q 010089 322 LQNITQALHIKDCNSLPLNL--LHLANMEHLQLFSIWDSNLEDW-NVDCAGEVQKMLKLHFVN 381 (518)
Q Consensus 322 l~~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~-~~~~~~~l~~L~~L~l~~ 381 (518)
....|++|++++|. +.... ..+..+++|+.|++.+| +... .+.....+++|++|++.+
T Consensus 287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFP 347 (594)
T ss_dssp HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEEC
T ss_pred hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEec
Confidence 34668888888876 43321 33456778888888777 2211 122223467777777744
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.45 E-value=4.9e-13 Score=138.88 Aligned_cols=160 Identities=21% Similarity=0.316 Sum_probs=116.6
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCccc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEM 244 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l 244 (518)
+++.++.+..++. +..+++|+.|+|++| .+..+|. +..+++|++|+|++|.+..+| .+..+++|++|++++|..
T Consensus 48 L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l- 121 (605)
T 1m9s_A 48 IIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGI- 121 (605)
T ss_dssp CBCTTCCCCCCTT--GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCC-
T ss_pred EECcCCCCCCChH--HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCC-
Confidence 7888899988874 899999999999999 6777775 999999999999999999987 699999999999999976
Q ss_pred ccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhh
Q 010089 245 CKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQN 324 (518)
Q Consensus 245 ~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~ 324 (518)
..++. +..+++|+.|++++|.... +..+..+++|+.|++
T Consensus 122 ---~~l~~--l~~l~~L~~L~Ls~N~l~~-----------------l~~l~~l~~L~~L~L------------------- 160 (605)
T 1m9s_A 122 ---SDING--LVHLPQLESLYLGNNKITD-----------------ITVLSRLTKLDTLSL------------------- 160 (605)
T ss_dssp ---CCCGG--GGGCTTCSEEECCSSCCCC-----------------CGGGGSCTTCSEEEC-------------------
T ss_pred ---CCCcc--ccCCCccCEEECCCCccCC-----------------chhhcccCCCCEEEC-------------------
Confidence 56665 8999999999999987632 123445555554444
Q ss_pred ccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccccEEEEecC
Q 010089 325 ITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNC 382 (518)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c 382 (518)
++|. +...+. +..+++|+.|++++|.+..+ ..+..+++|+.|+|++|
T Consensus 161 -------s~N~-l~~~~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 161 -------EDNQ-ISDIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp -------CSSC-CCCCGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSE
T ss_pred -------cCCc-CCCchh-hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCC
Confidence 3332 122212 45556666666666655542 23555666666666655
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.45 E-value=4.3e-13 Score=120.31 Aligned_cols=178 Identities=12% Similarity=0.153 Sum_probs=126.9
Q ss_pred cEEEeecCCCcCccCccccCccccCEEecCCCcCCccchh-hhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEe
Q 010089 187 RVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQE-LKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLR 265 (518)
Q Consensus 187 r~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~ 265 (518)
+.++.+++ .+..+|..+ ..+|++|+++++.++.+|.. +.++++|++|++++|.. ..+|...+..+++|++|+
T Consensus 10 ~~v~c~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 10 TTVECYSQ-GRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL----QSLPNGVFNKLTSLTYLN 82 (208)
T ss_dssp TEEECCSS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC----CCCCTTTTTTCTTCCEEE
T ss_pred CEEEecCC-CccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc----CccChhhcCCCCCcCEEE
Confidence 56677776 677777665 35889999999988887764 57888999999988865 677776577888888888
Q ss_pred ccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhhccceeecccCCCCCccccccc
Q 010089 266 MLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLA 345 (518)
Q Consensus 266 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~l~ 345 (518)
+.+|..... .+..+.
T Consensus 83 Ls~n~l~~~-----------------------------------------------------------------~~~~~~ 97 (208)
T 2o6s_A 83 LSTNQLQSL-----------------------------------------------------------------PNGVFD 97 (208)
T ss_dssp CCSSCCCCC-----------------------------------------------------------------CTTTTT
T ss_pred CCCCcCCcc-----------------------------------------------------------------CHhHhc
Confidence 877654110 001234
Q ss_pred cccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCc--ccccCCCccEEEEecCcchhhhhcccchhccccc
Q 010089 346 NMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT--WLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEV 423 (518)
Q Consensus 346 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l 423 (518)
.+++|+.|++++|.++.+.+..+..+++|++|+++++ .+..++ .+..+++|+.|++++++
T Consensus 98 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~----------------- 159 (208)
T 2o6s_A 98 KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP----------------- 159 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC-----------------
T ss_pred CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC-----------------
Confidence 5677888888888887766666778888999999887 455554 26778899999988864
Q ss_pred cccCCCCccCCCcceeeccCCccccccCCCCCCCCC
Q 010089 424 SEMMGEPILFSELELLVISNASNLKRIYRDPLPFPH 459 (518)
Q Consensus 424 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 459 (518)
..+.+++|+.|.+....--..+|..++.++.
T Consensus 160 -----~~~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 160 -----WDCTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -----BCCCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -----eecCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 2235677787777765444567766655544
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.44 E-value=1e-12 Score=135.08 Aligned_cols=176 Identities=13% Similarity=0.162 Sum_probs=116.6
Q ss_pred CCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEE
Q 010089 185 SLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVL 264 (518)
Q Consensus 185 ~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L 264 (518)
+|++|++++| .++.+|..+. ++|++|++++|.++.+| ..+++|++|++++|.. ..+|. +.+ +|++|
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l----~~ip~--l~~--~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRL----STLPE--LPA--SLKHL 125 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCC----SCCCC--CCT--TCCEE
T ss_pred CccEEEeCCC-CCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCC----CCcch--hhc--CCCEE
Confidence 7788888887 5666777664 67888888888888887 4577888888888765 55666 443 78888
Q ss_pred eccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhhccceeecccCCCCCcccccc
Q 010089 265 RMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHL 344 (518)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~l 344 (518)
++++|.... .+. .+ ..|+.|+++++. +..++.
T Consensus 126 ~Ls~N~l~~-------------lp~------~l--------------------------~~L~~L~Ls~N~-l~~lp~-- 157 (571)
T 3cvr_A 126 DVDNNQLTM-------------LPE------LP--------------------------ALLEYINADNNQ-LTMLPE-- 157 (571)
T ss_dssp ECCSSCCSC-------------CCC------CC--------------------------TTCCEEECCSSC-CSCCCC--
T ss_pred ECCCCcCCC-------------CCC------cC--------------------------ccccEEeCCCCc-cCcCCC--
Confidence 887776521 000 11 224455555543 233332
Q ss_pred ccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCcccccCCCc-------cEEEEecCcchhhhhcccch
Q 010089 345 ANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLTWLVFVPNL-------KWLQIFNCDDMEEIISVEKF 417 (518)
Q Consensus 345 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L-------~~L~L~~c~~l~~~~~~~~~ 417 (518)
.+++|+.|++++|.++.+ |. +. ++|+.|+++++ .++.+|.+. ++| +.|+|++|. ++.++.
T Consensus 158 -~l~~L~~L~Ls~N~L~~l-p~-l~--~~L~~L~Ls~N-~L~~lp~~~--~~L~~~~~~L~~L~Ls~N~-l~~lp~---- 224 (571)
T 3cvr_A 158 -LPTSLEVLSVRNNQLTFL-PE-LP--ESLEALDVSTN-LLESLPAVP--VRNHHSEETEIFFRCRENR-ITHIPE---- 224 (571)
T ss_dssp -CCTTCCEEECCSSCCSCC-CC-CC--TTCCEEECCSS-CCSSCCCCC----------CCEEEECCSSC-CCCCCG----
T ss_pred -cCCCcCEEECCCCCCCCc-ch-hh--CCCCEEECcCC-CCCchhhHH--HhhhcccccceEEecCCCc-ceecCH----
Confidence 457889999999988773 44 44 88999999988 666776532 266 888888853 454443
Q ss_pred hccccccccCCCCccCCCcceeeccCCcc
Q 010089 418 EKLGEVSEMMGEPILFSELELLVISNASN 446 (518)
Q Consensus 418 ~~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 446 (518)
.+..+++|+.|++++++-
T Consensus 225 -----------~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 225 -----------NILSLDPTCTIILEDNPL 242 (571)
T ss_dssp -----------GGGGSCTTEEEECCSSSC
T ss_pred -----------HHhcCCCCCEEEeeCCcC
Confidence 455688888888888643
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.43 E-value=1.3e-12 Score=134.28 Aligned_cols=176 Identities=18% Similarity=0.212 Sum_probs=131.6
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCccc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEM 244 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l 244 (518)
+++.+|++..+|..+ +++|++|++++| .++.+| +.+++|++|++++|.++.+|. +.+ +|++|++++|..
T Consensus 64 L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l- 132 (571)
T 3cvr_A 64 LQLNRLNLSSLPDNL---PPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQL- 132 (571)
T ss_dssp EECCSSCCSCCCSCC---CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCC-
T ss_pred EEeCCCCCCccCHhH---cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcC-
Confidence 889999999988764 378999999999 777898 568999999999999999998 665 999999999976
Q ss_pred ccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhh
Q 010089 245 CKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQN 324 (518)
Q Consensus 245 ~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~ 324 (518)
..+|. .+++|++|++++|.... .+. .+ .
T Consensus 133 ---~~lp~----~l~~L~~L~Ls~N~l~~-------------lp~------~l--------------------------~ 160 (571)
T 3cvr_A 133 ---TMLPE----LPALLEYINADNNQLTM-------------LPE------LP--------------------------T 160 (571)
T ss_dssp ---SCCCC----CCTTCCEEECCSSCCSC-------------CCC------CC--------------------------T
T ss_pred ---CCCCC----cCccccEEeCCCCccCc-------------CCC------cC--------------------------C
Confidence 66776 68999999999887632 110 12 2
Q ss_pred ccceeecccCCCCCccccccccccccceEEeccCcCccccccCccccccc-------cEEEEecCCCCCCCc-ccccCCC
Q 010089 325 ITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKM-------LKLHFVNCSNVKDLT-WLVFVPN 396 (518)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L-------~~L~l~~c~~l~~l~-~l~~l~~ 396 (518)
.|+.|++++|. +..++. +. ++|+.|++++|.++.+ |. +.. +| +.|++++| .+..+| .+..+++
T Consensus 161 ~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N~L~~l-p~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~ 231 (571)
T 3cvr_A 161 SLEVLSVRNNQ-LTFLPE-LP--ESLEALDVSTNLLESL-PA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDP 231 (571)
T ss_dssp TCCEEECCSSC-CSCCCC-CC--TTCCEEECCSSCCSSC-CC-CC----------CCEEEECCSS-CCCCCCGGGGGSCT
T ss_pred CcCEEECCCCC-CCCcch-hh--CCCCEEECcCCCCCch-hh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCC
Confidence 34566666653 344444 43 7899999999887754 33 433 66 99999988 566676 4777999
Q ss_pred ccEEEEecCcchhhhh
Q 010089 397 LKWLQIFNCDDMEEII 412 (518)
Q Consensus 397 L~~L~L~~c~~l~~~~ 412 (518)
|+.|+|++++.-..++
T Consensus 232 L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 232 TCTIILEDNPLSSRIR 247 (571)
T ss_dssp TEEEECCSSSCCHHHH
T ss_pred CCEEEeeCCcCCCcCH
Confidence 9999999876544443
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.43 E-value=8.3e-13 Score=119.43 Aligned_cols=99 Identities=21% Similarity=0.304 Sum_probs=76.2
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCc-cccCccccCEEecCCCcCCcc-chhhhcCCCCcEeeccCCc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLHHLDLSSTKVRGL-PQELKALVNLRYLNLDYTN 242 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~ 242 (518)
+++.++++..+|.. + .+.|+.|++++| .+..+|. .+..+++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 16 v~c~~~~l~~iP~~-l--~~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 16 VDCRGKGLTEIPTN-L--PETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EECTTSCCSSCCSS-C--CTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEcCCCCcCcCCCc-c--CcCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 66777788888765 2 267888888888 5555554 678888888888888888885 6778888888888888886
Q ss_pred ccccccCCchhhhcCCCCCcEEeccccCC
Q 010089 243 EMCKMCKIPEQLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 243 ~l~~~~~lp~~~~~~l~~L~~L~l~~~~~ 271 (518)
. ..+|.+.+..+++|++|++.+|..
T Consensus 92 l----~~l~~~~f~~l~~L~~L~L~~N~l 116 (220)
T 2v9t_B 92 I----TELPKSLFEGLFSLQLLLLNANKI 116 (220)
T ss_dssp C----CCCCTTTTTTCTTCCEEECCSSCC
T ss_pred C----CccCHhHccCCCCCCEEECCCCCC
Confidence 5 677777667888888888877755
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.42 E-value=1.2e-12 Score=119.31 Aligned_cols=100 Identities=20% Similarity=0.240 Sum_probs=76.8
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchh-hhcCCCCcEeeccCCcc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQE-LKALVNLRYLNLDYTNE 243 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~ 243 (518)
++..++++..+|... .++|++|++++|......|..+..+++|++|++++|.++.+|.. +..+++|++|++++|..
T Consensus 24 v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 24 VDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp EECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred eEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 677778888888652 37888899988843333467788888899999988888888754 57888888888888865
Q ss_pred cccccCCchhhhcCCCCCcEEeccccCC
Q 010089 244 MCKMCKIPEQLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 244 l~~~~~lp~~~~~~l~~L~~L~l~~~~~ 271 (518)
..+|.+.+..+++|++|++.+|..
T Consensus 101 ----~~l~~~~~~~l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 101 ----TVLPSAVFDRLVHLKELFMCCNKL 124 (229)
T ss_dssp ----CCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ----CccChhHhCcchhhCeEeccCCcc
Confidence 677766567888888888877654
No 113
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.41 E-value=3.1e-14 Score=149.29 Aligned_cols=77 Identities=21% Similarity=0.220 Sum_probs=43.1
Q ss_pred eecccccccccChh----hhCCCCCCcEEEeecCC-Cc--CccCccccCccccCEEecCCC-cCCccchhhhcCCCCcEe
Q 010089 165 LLLEYNHIEEITES----FFQSLPSLRVLNLSVNH-YL--TELPVGISSLVSLHHLDLSST-KVRGLPQELKALVNLRYL 236 (518)
Q Consensus 165 l~l~~~~i~~~~~~----~~~~l~~Lr~L~L~~~~-~~--~~lp~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L 236 (518)
+++.+|.+...... +...+++|++|++++|. .+ ..++.-+..+++|++|++++| .+..+|..+.++++|++|
T Consensus 161 L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 240 (594)
T 2p1m_B 161 LDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL 240 (594)
T ss_dssp EECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEE
T ss_pred EeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEc
Confidence 66666665543222 23356677777777763 01 112222334577777777776 555566666666677776
Q ss_pred eccCC
Q 010089 237 NLDYT 241 (518)
Q Consensus 237 ~l~~~ 241 (518)
+++.+
T Consensus 241 ~l~~~ 245 (594)
T 2p1m_B 241 GTGGY 245 (594)
T ss_dssp ECSBC
T ss_pred ccccc
Confidence 65443
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.40 E-value=2.9e-13 Score=126.02 Aligned_cols=167 Identities=16% Similarity=0.262 Sum_probs=127.2
Q ss_pred CCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCC
Q 010089 182 SLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKL 261 (518)
Q Consensus 182 ~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L 261 (518)
.+.++..++++++ .+..++ .+..+.+|++|++++|.++.+| .+..+++|++|++++|.. ..++. +..+++|
T Consensus 17 ~l~~l~~l~l~~~-~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i----~~~~~--l~~l~~L 87 (263)
T 1xeu_A 17 GLANAVKQNLGKQ-SVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQI----SDLSP--LKDLTKL 87 (263)
T ss_dssp HHHHHHHHHHTCS-CTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC----CCCGG--GTTCSSC
T ss_pred HHHHHHHHHhcCC-Cccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCcc----CCChh--hccCCCC
Confidence 3556677788888 677777 7888999999999999999998 789999999999999976 67777 8899999
Q ss_pred cEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhhccceeecccCCCCCccc
Q 010089 262 QVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNL 341 (518)
Q Consensus 262 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~~ 341 (518)
++|++.+|..... +. +. . ..|+.|+++++. +..+
T Consensus 88 ~~L~L~~N~l~~l-------------~~----~~-------------------------~--~~L~~L~L~~N~-l~~~- 121 (263)
T 1xeu_A 88 EELSVNRNRLKNL-------------NG----IP-------------------------S--ACLSRLFLDNNE-LRDT- 121 (263)
T ss_dssp CEEECCSSCCSCC-------------TT----CC-------------------------C--SSCCEEECCSSC-CSBS-
T ss_pred CEEECCCCccCCc-------------Cc----cc-------------------------c--CcccEEEccCCc-cCCC-
Confidence 9999998866320 00 00 0 235667776663 3333
Q ss_pred cccccccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCcccccCCCccEEEEecCc
Q 010089 342 LHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLTWLVFVPNLKWLQIFNCD 406 (518)
Q Consensus 342 ~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~L~~c~ 406 (518)
..+..+++|+.|++++|.++.+ ..+..+++|+.|+++++ .+..++.+..+++|+.|+++++.
T Consensus 122 ~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 122 DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGN-EITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTS-CCCBCTTSTTCCCCCEEEEEEEE
T ss_pred hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCC-cCcchHHhccCCCCCEEeCCCCc
Confidence 3577788899999998888764 35777888999999887 55666777788888888888864
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.39 E-value=3.1e-12 Score=115.69 Aligned_cols=99 Identities=14% Similarity=0.176 Sum_probs=70.6
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccC--ccccCccccCEEecCCCcCCccch-hhhcCCCCcEeeccCC
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP--VGISSLVSLHHLDLSSTKVRGLPQ-ELKALVNLRYLNLDYT 241 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~ 241 (518)
++++++.+..+|..+ ...+++|++++| .+..++ ..+..+++|++|++++|.++.+|. .+.++++|++|++++|
T Consensus 16 l~~s~n~l~~iP~~~---~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 16 VDCSNQKLNKIPEHI---PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EECCSSCCSSCCSCC---CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred eEeCCCCcccCccCC---CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 677777777777642 245678888888 555553 236778888888888888877655 6777888888888887
Q ss_pred cccccccCCchhhhcCCCCCcEEeccccCC
Q 010089 242 NEMCKMCKIPEQLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 242 ~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~ 271 (518)
.. ..++.+.+..+++|++|++++|..
T Consensus 92 ~l----~~~~~~~~~~l~~L~~L~Ls~N~l 117 (220)
T 2v70_A 92 RL----ENVQHKMFKGLESLKTLMLRSNRI 117 (220)
T ss_dssp CC----CCCCGGGGTTCSSCCEEECTTSCC
T ss_pred cc----CccCHhHhcCCcCCCEEECCCCcC
Confidence 65 566665577778888887776654
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.37 E-value=4.1e-12 Score=114.86 Aligned_cols=78 Identities=14% Similarity=0.303 Sum_probs=62.9
Q ss_pred cEEEeecCCCcCccCccccCccccCEEecCCCcCCccch-hhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEe
Q 010089 187 RVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQ-ELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLR 265 (518)
Q Consensus 187 r~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~ 265 (518)
+.++++++ .++.+|..+. .+|+.|++++|.++.+|. .+..+++|++|++++|.. ..++++.+.++++|++|+
T Consensus 14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i----~~~~~~~~~~l~~L~~L~ 86 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI----SELAPDAFQGLRSLNSLV 86 (220)
T ss_dssp TEEECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCC----CEECTTTTTTCSSCCEEE
T ss_pred CEEEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcC----CCcCHHHhhCCcCCCEEE
Confidence 57888888 7888888775 689999999999988776 678899999999999876 455444488889999999
Q ss_pred ccccCC
Q 010089 266 MLHCGS 271 (518)
Q Consensus 266 l~~~~~ 271 (518)
+++|..
T Consensus 87 Ls~N~l 92 (220)
T 2v9t_B 87 LYGNKI 92 (220)
T ss_dssp CCSSCC
T ss_pred CCCCcC
Confidence 888765
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.36 E-value=3.8e-14 Score=146.30 Aligned_cols=210 Identities=15% Similarity=0.128 Sum_probs=116.1
Q ss_pred cCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCCCccccccCCCCc
Q 010089 205 SSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLS 284 (518)
Q Consensus 205 ~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 284 (518)
..+++|+.|++++|.++.+|++++++++|+.|+++++..+ ..+|.. . ..++..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l---~~l~~l-l------~~~~~~----------------- 398 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCL---LTIILL-M------RALDPL----------------- 398 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH---HHHHHH-H------HHHCTG-----------------
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhh---hhHHHH-H------Hhcccc-----------------
Confidence 5678899999999999899999999999999998766422 112210 0 000000
Q ss_pred chhhhhHHHhhcccccceEEEEEecCcccc-------ccccCcchhhccceeecccCCCCCccccccccccccceEEecc
Q 010089 285 DDAESLMKEIHCLEQLNLIALSLRGSRGVE-------NFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWD 357 (518)
Q Consensus 285 ~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~-------~l~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 357 (518)
+..+..++.+.+|+.|..+.. .....+. .+...+ ...++.|+++++. +..++. +..+++|+.|++++
T Consensus 399 ~~~~~~l~~l~~L~~L~~l~~--n~~~~L~~l~l~~n~i~~l~--~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~ 472 (567)
T 1dce_A 399 LYEKETLQYFSTLKAVDPMRA--AYLDDLRSKFLLENSVLKME--YADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSH 472 (567)
T ss_dssp GGHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHHHHHHHHHH--HTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCS
T ss_pred cCCHHHHHHHHhcccCcchhh--cccchhhhhhhhcccccccC--ccCceEEEecCCC-CCCCcC-ccccccCcEeecCc
Confidence 112223333333333221000 0000000 000000 0125667777663 444544 67777777777777
Q ss_pred CcCccccccCccccccccEEEEecCCCCCCCcccccCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcc
Q 010089 358 SNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLTWLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELE 437 (518)
Q Consensus 358 ~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~ 437 (518)
|.++. .|..++.+++|+.|+++++ .++.+|.++.+++|+.|+|+++. +..+.. +..++.+++|+
T Consensus 473 N~l~~-lp~~~~~l~~L~~L~Ls~N-~l~~lp~l~~l~~L~~L~Ls~N~-l~~~~~-------------p~~l~~l~~L~ 536 (567)
T 1dce_A 473 NRLRA-LPPALAALRCLEVLQASDN-ALENVDGVANLPRLQELLLCNNR-LQQSAA-------------IQPLVSCPRLV 536 (567)
T ss_dssp SCCCC-CCGGGGGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCSSC-CCSSST-------------TGGGGGCTTCC
T ss_pred ccccc-cchhhhcCCCCCEEECCCC-CCCCCcccCCCCCCcEEECCCCC-CCCCCC-------------cHHHhcCCCCC
Confidence 76664 4556777777777777776 55556667777777777777753 333310 11455677777
Q ss_pred eeeccCCccccccCCCCC----CCCCcceEe
Q 010089 438 LLVISNASNLKRIYRDPL----PFPHLERIG 464 (518)
Q Consensus 438 ~L~l~~~~~l~~l~~~~~----~~~~L~~L~ 464 (518)
.|+++++ .+..++.... .+|+|+.|+
T Consensus 537 ~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 537 LLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp EEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred EEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 7777774 4555543322 256666654
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.35 E-value=2.6e-12 Score=125.58 Aligned_cols=100 Identities=26% Similarity=0.338 Sum_probs=75.1
Q ss_pred eeecccccccccChhhhCCCCCCcEEEeecCCCcCccCcc-cc-CccccCEEecCCCcCCccch-hhhcCCCCcEeeccC
Q 010089 164 TLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-IS-SLVSLHHLDLSSTKVRGLPQ-ELKALVNLRYLNLDY 240 (518)
Q Consensus 164 ~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~-i~-~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~ 240 (518)
.+++.++++..+|..+ .+.+++|+|++| .+..++.. +. .+.+|++|++++|.++.+|. .+.++++|++|++++
T Consensus 22 ~l~c~~~~l~~iP~~~---~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSL---PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EEECCSSCCSSCCSSC---CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcCccCccC---CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 3777778888887652 245788888888 56666544 44 78888888888888888764 578888888888888
Q ss_pred CcccccccCCchhhhcCCCCCcEEeccccCC
Q 010089 241 TNEMCKMCKIPEQLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 241 ~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~ 271 (518)
|.. ..++.+.+..+++|++|++.+|..
T Consensus 98 N~l----~~~~~~~~~~l~~L~~L~L~~N~i 124 (361)
T 2xot_A 98 NHL----HTLDEFLFSDLQALEVLLLYNNHI 124 (361)
T ss_dssp SCC----CEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcC----CcCCHHHhCCCcCCCEEECCCCcc
Confidence 865 666666678888888888887765
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.34 E-value=1.2e-11 Score=112.59 Aligned_cols=79 Identities=22% Similarity=0.311 Sum_probs=66.9
Q ss_pred CcEEEeecCCCcCccCccccCccccCEEecCCCcCCcc-chhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEE
Q 010089 186 LRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGL-PQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVL 264 (518)
Q Consensus 186 Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L 264 (518)
.+.++.+++ .+..+|..+. .+|++|++++|.++.+ |..+.++++|++|++++|.. ..+|.+.+..+++|++|
T Consensus 21 ~~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l----~~i~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 21 GTTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL----GALPVGVFDSLTQLTVL 93 (229)
T ss_dssp TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC----CCCCTTTTTTCTTCCEE
T ss_pred CCEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC----CCcChhhcccCCCcCEE
Confidence 456888887 7888898775 8999999999999986 66788999999999999976 77887767899999999
Q ss_pred eccccCC
Q 010089 265 RMLHCGS 271 (518)
Q Consensus 265 ~l~~~~~ 271 (518)
++++|..
T Consensus 94 ~Ls~N~l 100 (229)
T 3e6j_A 94 DLGTNQL 100 (229)
T ss_dssp ECCSSCC
T ss_pred ECCCCcC
Confidence 9988765
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.33 E-value=9.8e-12 Score=112.35 Aligned_cols=78 Identities=19% Similarity=0.194 Sum_probs=64.7
Q ss_pred cEEEeecCCCcCccCccccCccccCEEecCCCcCCccch--hhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEE
Q 010089 187 RVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQ--ELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVL 264 (518)
Q Consensus 187 r~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L 264 (518)
++++++++ .++.+|..+. ..+++|++++|.++.++. .+.++++|++|++++|.. ..++.+.+..+++|++|
T Consensus 14 ~~l~~s~n-~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i----~~i~~~~~~~l~~L~~L 86 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI----TDIEEGAFEGASGVNEI 86 (220)
T ss_dssp TEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCC----CEECTTTTTTCTTCCEE
T ss_pred CEeEeCCC-CcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcC----CEECHHHhCCCCCCCEE
Confidence 58999998 7888998775 457899999999999743 378999999999999976 66666558899999999
Q ss_pred eccccCC
Q 010089 265 RMLHCGS 271 (518)
Q Consensus 265 ~l~~~~~ 271 (518)
++++|..
T Consensus 87 ~Ls~N~l 93 (220)
T 2v70_A 87 LLTSNRL 93 (220)
T ss_dssp ECCSSCC
T ss_pred ECCCCcc
Confidence 9988766
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.31 E-value=5.3e-12 Score=123.38 Aligned_cols=123 Identities=22% Similarity=0.249 Sum_probs=100.5
Q ss_pred EEecCcCCCCCCch-hhhhheeecccccccccChhhhC-CCCCCcEEEeecCCCcCccC-ccccCccccCEEecCCCcCC
Q 010089 145 LVRAGVGLTDAPKI-EEWEGTLLLEYNHIEEITESFFQ-SLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDLSSTKVR 221 (518)
Q Consensus 145 ~~~~~~~~~~~~~~-~~~~~~l~l~~~~i~~~~~~~~~-~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~l~ 221 (518)
+...+..+..+|.. ......+++++|++..+++..|. ++++|++|+|++| .+..++ ..+..+++|++|++++|.++
T Consensus 23 l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (361)
T 2xot_A 23 LSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLH 101 (361)
T ss_dssp EECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred EEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCC
Confidence 44445556666642 22234499999999999998887 9999999999999 666665 56999999999999999999
Q ss_pred ccch-hhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCC
Q 010089 222 GLPQ-ELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSN 272 (518)
Q Consensus 222 ~lp~-~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 272 (518)
.+|. .+..+++|++|++++|.. ..++...+..+++|++|++.+|...
T Consensus 102 ~~~~~~~~~l~~L~~L~L~~N~i----~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 102 TLDEFLFSDLQALEVLLLYNNHI----VVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCC----CEECTTTTTTCTTCCEEECCSSCCC
T ss_pred cCCHHHhCCCcCCCEEECCCCcc----cEECHHHhCCcccCCEEECCCCcCC
Confidence 9876 588999999999999986 5565555899999999999998763
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.27 E-value=1.1e-11 Score=107.04 Aligned_cols=84 Identities=17% Similarity=0.144 Sum_probs=62.9
Q ss_pred CCCCCcEEEeecCCCcC--ccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCC
Q 010089 182 SLPSLRVLNLSVNHYLT--ELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFS 259 (518)
Q Consensus 182 ~l~~Lr~L~L~~~~~~~--~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~ 259 (518)
..++|++|++++| .+. .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|... ..+|.. +..++
T Consensus 22 ~~~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~---~~~~~~-~~~l~ 95 (168)
T 2ell_A 22 TPAAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIF---GGLDML-AEKLP 95 (168)
T ss_dssp CTTSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCC---SCCCHH-HHHCT
T ss_pred CcccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCc---hHHHHH-HhhCC
Confidence 3477888888888 455 7787778888888888888888777 66778888888888888763 225543 66688
Q ss_pred CCcEEeccccCC
Q 010089 260 KLQVLRMLHCGS 271 (518)
Q Consensus 260 ~L~~L~l~~~~~ 271 (518)
+|++|++.+|..
T Consensus 96 ~L~~L~Ls~N~l 107 (168)
T 2ell_A 96 NLTHLNLSGNKL 107 (168)
T ss_dssp TCCEEECBSSSC
T ss_pred CCCEEeccCCcc
Confidence 888888877755
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=1.6e-12 Score=138.38 Aligned_cols=85 Identities=24% Similarity=0.267 Sum_probs=42.3
Q ss_pred hCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCC
Q 010089 180 FQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFS 259 (518)
Q Consensus 180 ~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~ 259 (518)
|..++.|++|+|++| .+..+|..+..+.+|++|+|++|.++.+|..+++|++|++|+|++|.. ..+|.. +++|+
T Consensus 220 ~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l----~~lp~~-~~~l~ 293 (727)
T 4b8c_D 220 KYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRL----TSLPAE-LGSCF 293 (727)
T ss_dssp --CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCC----SSCCSS-GGGGT
T ss_pred hccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcC----CccChh-hcCCC
Confidence 445555555555555 344455555555555555555555555555555555555555555543 444444 44555
Q ss_pred CCcEEeccccC
Q 010089 260 KLQVLRMLHCG 270 (518)
Q Consensus 260 ~L~~L~l~~~~ 270 (518)
+|++|++.+|.
T Consensus 294 ~L~~L~L~~N~ 304 (727)
T 4b8c_D 294 QLKYFYFFDNM 304 (727)
T ss_dssp TCSEEECCSSC
T ss_pred CCCEEECCCCC
Confidence 55555555443
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=1.2e-11 Score=104.40 Aligned_cols=83 Identities=14% Similarity=0.091 Sum_probs=56.0
Q ss_pred CCCCcEEEeecCCCcC--ccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCC
Q 010089 183 LPSLRVLNLSVNHYLT--ELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSK 260 (518)
Q Consensus 183 l~~Lr~L~L~~~~~~~--~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~ 260 (518)
.++|+.|++++| .+. .+|..++.+++|++|++++|.++.+ ..++++++|++|++++|... ..+|.. +..+++
T Consensus 16 ~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~---~~~~~~-~~~l~~ 89 (149)
T 2je0_A 16 PSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVS---GGLEVL-AEKCPN 89 (149)
T ss_dssp GGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCC---SCTHHH-HHHCTT
T ss_pred CccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCccc---chHHHH-hhhCCC
Confidence 466777777777 444 6777677777777777777777776 56677777777777777652 224443 556777
Q ss_pred CcEEeccccCC
Q 010089 261 LQVLRMLHCGS 271 (518)
Q Consensus 261 L~~L~l~~~~~ 271 (518)
|++|++++|..
T Consensus 90 L~~L~ls~N~i 100 (149)
T 2je0_A 90 LTHLNLSGNKI 100 (149)
T ss_dssp CCEEECTTSCC
T ss_pred CCEEECCCCcC
Confidence 77777776654
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.19 E-value=1.5e-10 Score=102.10 Aligned_cols=97 Identities=20% Similarity=0.283 Sum_probs=47.6
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccch-hhhcCCCCcEeeccCCcc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQ-ELKALVNLRYLNLDYTNE 243 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~ 243 (518)
+++.++++..+|..+ .++|++|++++| .+..+|..+..+.+|++|++++|.++.++. .+..+++|++|++++|..
T Consensus 15 l~~~~~~l~~ip~~~---~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 15 VRCSNKGLKVLPKGI---PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EECTTSCCSSCCSCC---CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEcCCCCCCcCCCCC---CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 445555555555431 134555555555 444555555555555555555555555432 345555555555555543
Q ss_pred cccccCCchhhhcCCCCCcEEecccc
Q 010089 244 MCKMCKIPEQLISSFSKLQVLRMLHC 269 (518)
Q Consensus 244 l~~~~~lp~~~~~~l~~L~~L~l~~~ 269 (518)
..++.+.+..+++|++|++.+|
T Consensus 91 ----~~i~~~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 91 ----RCIPPRTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp ----CBCCTTTTTTCTTCCEEECCSS
T ss_pred ----CEeCHHHhCCCCCCCEEECCCC
Confidence 3344333444555555555443
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.17 E-value=2.4e-11 Score=105.70 Aligned_cols=85 Identities=19% Similarity=0.287 Sum_probs=60.1
Q ss_pred hCCCCCCcEEEeecCCCcCccCccccCcc-ccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccCCchhhhcCC
Q 010089 180 FQSLPSLRVLNLSVNHYLTELPVGISSLV-SLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSF 258 (518)
Q Consensus 180 ~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~-~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l 258 (518)
+.++.+|++|++++| .+..+|. +..+. +|++|++++|.++.+ ..+..+++|++|++++|.. ..+|.+.+..+
T Consensus 15 ~~~~~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l----~~~~~~~~~~l 87 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRI----CRIGEGLDQAL 87 (176)
T ss_dssp EECTTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCC----CEECSCHHHHC
T ss_pred cCCcCCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcc----cccCcchhhcC
Confidence 566778888888888 5666653 44444 788888888877777 5677777888888887765 55665544677
Q ss_pred CCCcEEeccccCC
Q 010089 259 SKLQVLRMLHCGS 271 (518)
Q Consensus 259 ~~L~~L~l~~~~~ 271 (518)
++|++|++.+|..
T Consensus 88 ~~L~~L~L~~N~i 100 (176)
T 1a9n_A 88 PDLTELILTNNSL 100 (176)
T ss_dssp TTCCEEECCSCCC
T ss_pred CCCCEEECCCCcC
Confidence 7777777776654
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.16 E-value=6.4e-11 Score=99.85 Aligned_cols=101 Identities=22% Similarity=0.331 Sum_probs=87.3
Q ss_pred eeeccccccc--ccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCc-cchhhhcCCCCcEeeccC
Q 010089 164 TLLLEYNHIE--EITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRG-LPQELKALVNLRYLNLDY 240 (518)
Q Consensus 164 ~l~l~~~~i~--~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l~~ 240 (518)
.+++.+|.+. .+|. .+..+++|++|++++| .+..+ ..++.+++|++|++++|.++. +|..++++++|++|++++
T Consensus 21 ~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~ 97 (149)
T 2je0_A 21 ELVLDNSRSNEGKLEG-LTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97 (149)
T ss_dssp EEECTTCBCBTTBCCS-CCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTT
T ss_pred EEEccCCcCChhHHHH-HHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCC
Confidence 3889999998 6666 4899999999999999 67776 689999999999999999998 888888899999999999
Q ss_pred CcccccccCCch-hhhcCCCCCcEEeccccCC
Q 010089 241 TNEMCKMCKIPE-QLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 241 ~~~l~~~~~lp~-~~~~~l~~L~~L~l~~~~~ 271 (518)
|.. ..+|. ..+..+++|++|++.+|..
T Consensus 98 N~i----~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 98 NKI----KDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp SCC----CSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred CcC----CChHHHHHHhhCCCCCEEeCcCCcc
Confidence 976 55541 3389999999999999876
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.16 E-value=3.3e-10 Score=97.61 Aligned_cols=127 Identities=22% Similarity=0.253 Sum_probs=87.5
Q ss_pred eeccccccc--ccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCc-cchhhhcCCCCcEeeccCC
Q 010089 165 LLLEYNHIE--EITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRG-LPQELKALVNLRYLNLDYT 241 (518)
Q Consensus 165 l~l~~~~i~--~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l~~~ 241 (518)
+++.+|++. .+|.. +..+++|++|++++| .+..+ ..++.+++|++|++++|.++. +|..+.++++|++|++++|
T Consensus 29 L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 105 (168)
T 2ell_A 29 LVLDNCKSNDGKIEGL-TAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105 (168)
T ss_dssp EECCSCBCBTTBCSSC-CGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS
T ss_pred EECCCCCCChhhHHHH-HHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC
Confidence 777788877 66554 677888888888888 56666 677888888888888888877 7777777888888888888
Q ss_pred cccccccCCch-hhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecC
Q 010089 242 NEMCKMCKIPE-QLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGS 310 (518)
Q Consensus 242 ~~l~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~ 310 (518)
.. ..+|. ..+..+++|++|++.+|..... .......+..+++|+.+++..+..
T Consensus 106 ~l----~~~~~~~~l~~l~~L~~L~l~~N~l~~~------------~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 106 KL----KDISTLEPLKKLECLKSLDLFNCEVTNL------------NDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp SC----CSSGGGGGGSSCSCCCEEECCSSGGGTS------------TTHHHHHHTTCSSCCEETTEETTS
T ss_pred cc----CcchhHHHHhcCCCCCEEEeeCCcCcch------------HHHHHHHHHhCccCcEecCCCCCh
Confidence 65 55552 2377888888888888766321 111112345555666666555443
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.15 E-value=1.8e-10 Score=101.57 Aligned_cols=77 Identities=18% Similarity=0.195 Sum_probs=41.1
Q ss_pred cEEEeecCCCcCccCccccCccccCEEecCCCcCCccchh--hhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEE
Q 010089 187 RVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQE--LKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVL 264 (518)
Q Consensus 187 r~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~--i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L 264 (518)
++++++++ .++.+|..+.. +|++|++++|.++.+|.. +.++++|++|++++|.. ..++++.+..+++|++|
T Consensus 11 ~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l----~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL----TGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTS-CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCC----CCBCTTTTTTCTTCCEE
T ss_pred CEEEcCCC-CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCC----CCcCHhHcCCcccCCEE
Confidence 45555555 45555554433 556666666655555542 55566666666666544 33322225555566666
Q ss_pred eccccC
Q 010089 265 RMLHCG 270 (518)
Q Consensus 265 ~l~~~~ 270 (518)
++++|.
T Consensus 84 ~Ls~N~ 89 (192)
T 1w8a_A 84 QLGENK 89 (192)
T ss_dssp ECCSCC
T ss_pred ECCCCc
Confidence 555543
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.15 E-value=2.3e-10 Score=100.95 Aligned_cols=121 Identities=24% Similarity=0.282 Sum_probs=98.8
Q ss_pred EEecCcCCCCCCchh-hhhheeecccccccccChhhhCCCCCCcEEEeecCCCcCccC-ccccCccccCEEecCCCcCCc
Q 010089 145 LVRAGVGLTDAPKIE-EWEGTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDLSSTKVRG 222 (518)
Q Consensus 145 ~~~~~~~~~~~~~~~-~~~~~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~l~~ 222 (518)
+...+..+..+|... .....+++.+|++..+|. .|.++++|++|++++| .+..++ ..+..+.+|++|++++|.++.
T Consensus 15 l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 15 VRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp EECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred EEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 344455556666422 222338999999999985 4999999999999999 566655 569999999999999999999
Q ss_pred cch-hhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCC
Q 010089 223 LPQ-ELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 223 lp~-~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~ 271 (518)
+|. .+..+++|++|++++|.. ..+|.+.+..+++|++|++.+|..
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~l----~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGNDI----SVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCC----CBCCTTTTTTCTTCCEEECCSSCE
T ss_pred eCHHHhCCCCCCCEEECCCCCC----CeeChhhhhcCccccEEEeCCCCe
Confidence 775 689999999999999976 788887788999999999998865
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.14 E-value=7.2e-11 Score=121.83 Aligned_cols=78 Identities=31% Similarity=0.395 Sum_probs=42.0
Q ss_pred CcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEe
Q 010089 186 LRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLR 265 (518)
Q Consensus 186 Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~ 265 (518)
|++|++++| .++.+|. ++.+++|++|++++|.++.+|..++++++|++|++++|.. ..+| + ++.+++|++|+
T Consensus 443 L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l----~~lp-~-l~~l~~L~~L~ 514 (567)
T 1dce_A 443 VRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL----ENVD-G-VANLPRLQELL 514 (567)
T ss_dssp CSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC----CCCG-G-GTTCSSCCEEE
T ss_pred ceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCC----CCCc-c-cCCCCCCcEEE
Confidence 555555555 4444553 5555555555555555555555555555555555555543 3444 2 55555555555
Q ss_pred ccccCC
Q 010089 266 MLHCGS 271 (518)
Q Consensus 266 l~~~~~ 271 (518)
+++|..
T Consensus 515 Ls~N~l 520 (567)
T 1dce_A 515 LCNNRL 520 (567)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 555544
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.12 E-value=3.6e-10 Score=98.22 Aligned_cols=103 Identities=28% Similarity=0.430 Sum_probs=87.7
Q ss_pred eeecccccccccChhhhCCCCCCcEEEeecCCCcCccCcc-ccCccccCEEecCCCcCCccchh-hhcCCCCcEeeccCC
Q 010089 164 TLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSSTKVRGLPQE-LKALVNLRYLNLDYT 241 (518)
Q Consensus 164 ~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~ 241 (518)
.+++.+|++..+++..|..+++|++|++++| .+..+|.. +..+++|++|++++|.++.+|.. +.++++|++|++++|
T Consensus 32 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN 110 (177)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC
Confidence 3888999999998887899999999999999 66666654 68899999999999999998765 688999999999998
Q ss_pred cccccccCCchhhhcCCCCCcEEeccccCC
Q 010089 242 NEMCKMCKIPEQLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 242 ~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~ 271 (518)
.. ..+|.+.+..+++|++|++.+|..
T Consensus 111 ~l----~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 111 QL----KSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CC----SCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cc----eEeCHHHhcCCcccCEEEecCCCe
Confidence 66 678877678899999999998876
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.12 E-value=1.6e-10 Score=102.00 Aligned_cols=103 Identities=22% Similarity=0.302 Sum_probs=73.5
Q ss_pred eecccccccccChh-hhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchh-hhcCCCCcEeeccCCc
Q 010089 165 LLLEYNHIEEITES-FFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQE-LKALVNLRYLNLDYTN 242 (518)
Q Consensus 165 l~l~~~~i~~~~~~-~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 242 (518)
+++.+|++..+++. .|..+++|++|++++|......|..++.+.+|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 34 L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp EECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 77777887777653 477788888888888833333366777888888888888887776543 6778888888888876
Q ss_pred ccccccCCchhhhcCCCCCcEEeccccCC
Q 010089 243 EMCKMCKIPEQLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 243 ~l~~~~~lp~~~~~~l~~L~~L~l~~~~~ 271 (518)
. ..++++.+..+++|++|++.+|..
T Consensus 114 l----~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 114 I----SCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp C----CEECTTSSTTCTTCCEEECTTCCB
T ss_pred C----CeeCHHHhhcCCCCCEEEeCCCCc
Confidence 5 334333377778888888877765
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.08 E-value=2.9e-10 Score=98.44 Aligned_cols=101 Identities=20% Similarity=0.277 Sum_probs=88.1
Q ss_pred eeecccccccccChhhhCCCCCCcEEEeecCCCcCcc-CccccCccccCEEecCCCcCCccchh-hhcCCCCcEeeccCC
Q 010089 164 TLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVRGLPQE-LKALVNLRYLNLDYT 241 (518)
Q Consensus 164 ~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~ 241 (518)
.++++++++..+|..+ .++|++|++++| .+..+ |..++++++|++|++++|.++.+|.. +.++++|++|++++|
T Consensus 16 ~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGI---PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp EEECCSSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCCCccCCCc---CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4888999999998763 389999999999 55555 77899999999999999999999886 589999999999999
Q ss_pred cccccccCCchhhhcCCCCCcEEeccccCCC
Q 010089 242 NEMCKMCKIPEQLISSFSKLQVLRMLHCGSN 272 (518)
Q Consensus 242 ~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 272 (518)
.. ..+|.+.+..+++|++|++.+|...
T Consensus 92 ~l----~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HL----KSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CC----CCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cc----ceeCHHHhccccCCCEEEeCCCCcc
Confidence 76 7888877899999999999998763
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.06 E-value=4.1e-10 Score=97.81 Aligned_cols=100 Identities=22% Similarity=0.261 Sum_probs=75.6
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhh-hcCCCCcEeeccCCcc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQEL-KALVNLRYLNLDYTNE 243 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~l~~~~~ 243 (518)
+++.+|++..++. +....++|++|++++| .+..+ ..++.+++|++|++++|.++.+|..+ ..+++|++|++++|..
T Consensus 24 L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 100 (176)
T 1a9n_A 24 LDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100 (176)
T ss_dssp EECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC
T ss_pred EEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC
Confidence 7788888887743 2333348888888888 66666 57888888888888888888887655 7888888888888865
Q ss_pred cccccCCch-hhhcCCCCCcEEeccccCC
Q 010089 244 MCKMCKIPE-QLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 244 l~~~~~lp~-~~~~~l~~L~~L~l~~~~~ 271 (518)
..+|. ..+..+++|++|++.+|..
T Consensus 101 ----~~~~~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 101 ----VELGDLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp ----CCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred ----CcchhhHhhhcCCCCCEEEecCCCC
Confidence 56665 2277888888888888776
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.05 E-value=4.6e-10 Score=96.78 Aligned_cols=101 Identities=23% Similarity=0.299 Sum_probs=88.0
Q ss_pred eeecccccccccChhhhCCCCCCcEEEeecCCCcCcc-CccccCccccCEEecCCCcCCccchh-hhcCCCCcEeeccCC
Q 010089 164 TLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVRGLPQE-LKALVNLRYLNLDYT 241 (518)
Q Consensus 164 ~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~ 241 (518)
.++++++++..+|... .++|++|++++| .+..+ |..+..+.+|++|++++|.++.+|.. +.++++|++|++++|
T Consensus 13 ~l~~s~n~l~~ip~~~---~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 13 TVDCSGKSLASVPTGI---PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp EEECTTSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCccCccC---CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3888999999998763 388999999999 56665 77799999999999999999998876 589999999999999
Q ss_pred cccccccCCchhhhcCCCCCcEEeccccCCC
Q 010089 242 NEMCKMCKIPEQLISSFSKLQVLRMLHCGSN 272 (518)
Q Consensus 242 ~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 272 (518)
.. ..+|.+.+..+++|++|++.+|...
T Consensus 89 ~l----~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QL----KSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CC----CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cc----CEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 76 7788777899999999999998763
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.03 E-value=3.4e-10 Score=120.51 Aligned_cols=102 Identities=30% Similarity=0.372 Sum_probs=94.7
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCccc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEM 244 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l 244 (518)
+++++|.+..++..++ ++++|++|+|++| .+..+|..+++|.+|++|+|++|.++.+|..+++|++|++|+|++|..
T Consensus 229 L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l- 305 (727)
T 4b8c_D 229 LDLSNLQIFNISANIF-KYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMV- 305 (727)
T ss_dssp EECTTSCCSCCCGGGG-GCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCC-
T ss_pred EECCCCCCCCCChhhc-CCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCC-
Confidence 8999999999998844 8999999999999 677999999999999999999999999999999999999999999965
Q ss_pred ccccCCchhhhcCCCCCcEEeccccCCCC
Q 010089 245 CKMCKIPEQLISSFSKLQVLRMLHCGSNH 273 (518)
Q Consensus 245 ~~~~~lp~~~~~~l~~L~~L~l~~~~~~~ 273 (518)
..+|.+ ++++++|++|++.+|....
T Consensus 306 ---~~lp~~-~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 306 ---TTLPWE-FGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp ---CCCCSS-TTSCTTCCCEECTTSCCCS
T ss_pred ---CccChh-hhcCCCccEEeCCCCccCC
Confidence 789987 9999999999999998753
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.00 E-value=2.8e-09 Score=92.60 Aligned_cols=96 Identities=22% Similarity=0.336 Sum_probs=39.5
Q ss_pred eecccccccccChhhhCCCCCCcEEEeecCCCcCccCc-cccCccccCEEecCCCcCCccchh-hhcCCCCcEeeccCCc
Q 010089 165 LLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLHHLDLSSTKVRGLPQE-LKALVNLRYLNLDYTN 242 (518)
Q Consensus 165 l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 242 (518)
+++.++++..+|... .++|++|++++| .+..+|. .++.+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 12 l~~~~~~l~~~p~~~---~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 12 IRCNSKGLTSVPTGI---PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp EECCSSCCSSCCTTC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEecCCCCccCCCCC---CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 344444444444321 134444444444 2333332 234444444444444444444332 2444444444444443
Q ss_pred ccccccCCchhhhcCCCCCcEEeccc
Q 010089 243 EMCKMCKIPEQLISSFSKLQVLRMLH 268 (518)
Q Consensus 243 ~l~~~~~lp~~~~~~l~~L~~L~l~~ 268 (518)
. ..+|...+..+++|++|++.+
T Consensus 88 l----~~~~~~~~~~l~~L~~L~l~~ 109 (177)
T 2o6r_A 88 L----QSLPNGVFDKLTQLKELALDT 109 (177)
T ss_dssp C----CCCCTTTTTTCTTCCEEECCS
T ss_pred c----cccCHHHhhCCcccCEEECcC
Confidence 3 333333233444444444433
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=1.6e-09 Score=104.29 Aligned_cols=98 Identities=13% Similarity=0.065 Sum_probs=58.3
Q ss_pred ccccceEEeccCcCccccccCccccccccEEEEecCCCCCCCc--ccccCCCcc-EEEEecCcchhhhhcccchhccccc
Q 010089 347 MEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLT--WLVFVPNLK-WLQIFNCDDMEEIISVEKFEKLGEV 423 (518)
Q Consensus 347 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~l~~l~~L~-~L~L~~c~~l~~~~~~~~~~~~~~l 423 (518)
+++|+.+++.++.++.+....+..+.+|++|++.+. ++.++ .+..+++|+ .+.+.+ .++.+..
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~---------- 290 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF---------- 290 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT----------
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch----------
Confidence 567777777776666666666677777777777653 55554 355677777 777765 3444432
Q ss_pred cccCCCCccCCCcceeeccCCccccccCCC-CCCCCCcceE
Q 010089 424 SEMMGEPILFSELELLVISNASNLKRIYRD-PLPFPHLERI 463 (518)
Q Consensus 424 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L 463 (518)
....++++|+.+.+.+ .+++.++.. ...+++|+.|
T Consensus 291 ----~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 291 ----GAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp ----TTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEE
T ss_pred ----hhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhh
Confidence 1445566777777654 355555542 2334444444
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.98 E-value=2.1e-11 Score=108.24 Aligned_cols=67 Identities=24% Similarity=0.264 Sum_probs=36.8
Q ss_pred ccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCC
Q 010089 199 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 199 ~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~ 271 (518)
.+|..++.+++|++|++++|.++.+| .+.++++|++|++++|.. ..+|.. +..+++|++|++.+|..
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l----~~l~~~-~~~~~~L~~L~L~~N~l 105 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLI----KKIENL-DAVADTLEELWISYNQI 105 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEE----CSCSSH-HHHHHHCSEEEEEEEEC
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCc----ccccch-hhcCCcCCEEECcCCcC
Confidence 33345555566666666665555555 555566666666665543 445542 44455555555555544
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.90 E-value=6.9e-09 Score=99.83 Aligned_cols=99 Identities=12% Similarity=0.051 Sum_probs=75.1
Q ss_pred hhccceeecccCCCCCccc-cccccccccceEEeccCcCccccccCcccccccc-EEEEecCCCCCCCc--ccccCCCcc
Q 010089 323 QNITQALHIKDCNSLPLNL-LHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKML-KLHFVNCSNVKDLT--WLVFVPNLK 398 (518)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~-~L~l~~c~~l~~l~--~l~~l~~L~ 398 (518)
...|+.+++.++. +..++ ..+..+.+|+.+.+..+ ++.+....+..+++|+ .+.+.+ .++.++ .+..+++|+
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence 4568999998764 55665 57888999999999887 7777777889999999 999987 566665 567899999
Q ss_pred EEEEecCcchhhhhcccchhccccccccCCCCccCCCcceee
Q 010089 399 WLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLV 440 (518)
Q Consensus 399 ~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~ 440 (518)
.+++.+ ..++.+.. ....++++|+.+.
T Consensus 301 ~l~l~~-n~i~~I~~--------------~aF~~~~~L~~ly 327 (329)
T 3sb4_A 301 YVLATG-DKITTLGD--------------ELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECS-SCCCEECT--------------TTTCTTCCCCEEE
T ss_pred EEEeCC-CccCccch--------------hhhcCCcchhhhc
Confidence 999976 34555543 1445667777764
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.89 E-value=7.9e-11 Score=104.51 Aligned_cols=113 Identities=19% Similarity=0.299 Sum_probs=85.7
Q ss_pred cccccChhhhCCCCCCcEEEeecCCCcCccCccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccCC
Q 010089 171 HIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCKI 250 (518)
Q Consensus 171 ~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~l 250 (518)
.++.+|.. +..+++|++|++++| .+..+| .+..+++|++|++++|.++.+|..+..+++|++|++++|.. ..+
T Consensus 36 ~l~~l~~~-~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l----~~l 108 (198)
T 1ds9_A 36 PIEKMDAT-LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQI----ASL 108 (198)
T ss_dssp TCCCCHHH-HHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEEC----CCH
T ss_pred cHhhhhHH-HhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcC----CcC
Confidence 44555544 888899999999988 677788 88888999999999998888888888888999999998865 566
Q ss_pred chhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEE
Q 010089 251 PEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALS 306 (518)
Q Consensus 251 p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~ 306 (518)
|. +..+++|++|++.+|.... ...+..+..+++|+.+++.
T Consensus 109 ~~--~~~l~~L~~L~l~~N~i~~--------------~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 109 SG--IEKLVNLRVLYMSNNKITN--------------WGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp HH--HHHHHHSSEEEESEEECCC--------------HHHHHHHTTTTTCSEEEEC
T ss_pred Cc--cccCCCCCEEECCCCcCCc--------------hhHHHHHhcCCCCCEEEec
Confidence 64 7888899999998887632 1222445666666666654
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.86 E-value=1.1e-08 Score=88.50 Aligned_cols=99 Identities=24% Similarity=0.375 Sum_probs=81.7
Q ss_pred eEEecCcCCCCCCchh-hhhheeecccccccccChhhhCCCCCCcEEEeecCCCcCccCcc-ccCccccCEEecCCCcCC
Q 010089 144 FLVRAGVGLTDAPKIE-EWEGTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSSTKVR 221 (518)
Q Consensus 144 ~~~~~~~~~~~~~~~~-~~~~~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~l~ 221 (518)
.+...+..+..+|... .....+++++|++..+++..|.++++|++|+|++| .+..+|.. +..+++|++|++++|.++
T Consensus 16 ~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHLK 94 (174)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCccc
Confidence 3344455556666522 22234999999999998888999999999999999 77888776 589999999999999999
Q ss_pred ccchh-hhcCCCCcEeeccCCcc
Q 010089 222 GLPQE-LKALVNLRYLNLDYTNE 243 (518)
Q Consensus 222 ~lp~~-i~~L~~L~~L~l~~~~~ 243 (518)
.+|.. +.++++|++|++++|..
T Consensus 95 ~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 95 SIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCB
T ss_pred eeCHHHhccccCCCEEEeCCCCc
Confidence 99886 89999999999999976
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.79 E-value=1.9e-08 Score=86.58 Aligned_cols=97 Identities=27% Similarity=0.357 Sum_probs=79.6
Q ss_pred EecCcCCCCCCchh-hhhheeecccccccccChhhhCCCCCCcEEEeecCCCcCccCcc-ccCccccCEEecCCCcCCcc
Q 010089 146 VRAGVGLTDAPKIE-EWEGTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSSTKVRGL 223 (518)
Q Consensus 146 ~~~~~~~~~~~~~~-~~~~~l~l~~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~l~~l 223 (518)
...+..+..+|... .....+++++|++..+++..|.++++|++|++++| .+..+|.. +..+++|++|++++|.++.+
T Consensus 15 ~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~~ 93 (170)
T 3g39_A 15 DCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93 (170)
T ss_dssp ECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred EeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCccCEe
Confidence 34445555565422 22233999999999998888999999999999999 67777765 68999999999999999998
Q ss_pred chh-hhcCCCCcEeeccCCcc
Q 010089 224 PQE-LKALVNLRYLNLDYTNE 243 (518)
Q Consensus 224 p~~-i~~L~~L~~L~l~~~~~ 243 (518)
|.. +.++++|++|++++|..
T Consensus 94 ~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 94 PRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CTTTTTTCTTCCEEECCSSCB
T ss_pred CHHHhcCCCCCCEEEeCCCCC
Confidence 875 88999999999999976
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.74 E-value=2.4e-08 Score=96.76 Aligned_cols=100 Identities=17% Similarity=0.199 Sum_probs=85.4
Q ss_pred eecccc-cccccChhhhCCCCCCcEEEeec-CCCcCccC-ccccCccccCEEecCCCcCCccch-hhhcCCCCcEeeccC
Q 010089 165 LLLEYN-HIEEITESFFQSLPSLRVLNLSV-NHYLTELP-VGISSLVSLHHLDLSSTKVRGLPQ-ELKALVNLRYLNLDY 240 (518)
Q Consensus 165 l~l~~~-~i~~~~~~~~~~l~~Lr~L~L~~-~~~~~~lp-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~ 240 (518)
+++.++ ++..+|. +..+++|++|+|++ | .+..+| ..|++|.+|++|+|++|.++.+|. .+.+|++|++|+|++
T Consensus 13 v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALDSLHH--LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCTTTTT--SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCCccCC--CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 567777 8989887 89999999999997 7 677776 579999999999999999999765 679999999999999
Q ss_pred CcccccccCCchhhhcCCCCCcEEeccccCCC
Q 010089 241 TNEMCKMCKIPEQLISSFSKLQVLRMLHCGSN 272 (518)
Q Consensus 241 ~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 272 (518)
|.. ..+|.+.+..+. |++|++.+|...
T Consensus 90 N~l----~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NAL----ESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCC----SCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred Ccc----ceeCHHHcccCC-ceEEEeeCCCcc
Confidence 976 788887555555 999999988763
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.67 E-value=5.1e-07 Score=88.84 Aligned_cols=249 Identities=12% Similarity=0.066 Sum_probs=141.9
Q ss_pred ccccccChhhhCCCCCCcEEEeecCCCcCccCc-cccCccccCEEecCCCcCCccch-hhhcCCCCcEeeccCCcccccc
Q 010089 170 NHIEEITESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLHHLDLSSTKVRGLPQ-ELKALVNLRYLNLDYTNEMCKM 247 (518)
Q Consensus 170 ~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~ 247 (518)
+.++.++...|.++ +|+.+.+..+ +..++. .|.+ .+|+.+.+.. .++.++. .+..+++|+.+++..+..
T Consensus 122 ~~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l---- 192 (401)
T 4fdw_A 122 NSVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKI---- 192 (401)
T ss_dssp TTCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCC----
T ss_pred CccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcc----
Confidence 45667777778875 6888888765 444443 3555 4688888875 5666553 577788888888887754
Q ss_pred cCCchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhhccc
Q 010089 248 CKIPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQ 327 (518)
Q Consensus 248 ~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~ 327 (518)
..++.+.+. ..+|+.+.+..+-. . .....+ ..+.+|+.+
T Consensus 193 ~~I~~~aF~-~~~L~~l~lp~~l~-~------------I~~~aF---~~~~~L~~l------------------------ 231 (401)
T 4fdw_A 193 TKLPASTFV-YAGIEEVLLPVTLK-E------------IGSQAF---LKTSQLKTI------------------------ 231 (401)
T ss_dssp SEECTTTTT-TCCCSEEECCTTCC-E------------ECTTTT---TTCTTCCCE------------------------
T ss_pred eEechhhEe-ecccCEEEeCCchh-e------------ehhhHh---hCCCCCCEE------------------------
Confidence 677776454 57888887764311 0 111111 222233322
Q ss_pred eeecccCCCCCccc-cccccccccceEEeccCcCccccccCccccccccEEEEecCCCC----CCCc--ccccCCCccEE
Q 010089 328 ALHIKDCNSLPLNL-LHLANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNV----KDLT--WLVFVPNLKWL 400 (518)
Q Consensus 328 ~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l----~~l~--~l~~l~~L~~L 400 (518)
.+.. ++..+. ..+.. .+|+.+.+.. .++.+....+..+++|+.+.+.+...- ..++ .+..+++|+.+
T Consensus 232 --~l~~--~l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l 305 (401)
T 4fdw_A 232 --EIPE--NVSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARF 305 (401)
T ss_dssp --ECCT--TCCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEE
T ss_pred --ecCC--CccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeE
Confidence 2211 112221 22333 4677777733 455555566667777777777654211 1222 35567788888
Q ss_pred EEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccCCC-CCCCCCcceEeccCCCCCcCCCCCCC
Q 010089 401 QIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIYRD-PLPFPHLERIGISECPKLKKLPLNSS 479 (518)
Q Consensus 401 ~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~i~~C~~L~~lp~~~~ 479 (518)
.|.+ .++.+.. ....++++|+.+.|.+ +++.+... ...+ +|+.+.+.+. .+..++.+..
T Consensus 306 ~l~~--~i~~I~~--------------~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F 365 (401)
T 4fdw_A 306 EIPE--SIRILGQ--------------GLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVW 365 (401)
T ss_dssp CCCT--TCCEECT--------------TTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSC
T ss_pred EeCC--ceEEEhh--------------hhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccc
Confidence 7763 3444433 1445677888888854 56666543 3445 8888888775 5555554433
Q ss_pred C-CCCcceEEEchhhh
Q 010089 480 S-AKGRKIVIYGEKEW 494 (518)
Q Consensus 480 ~-~~~~l~~~~~~~~~ 494 (518)
. +...+..++.+...
T Consensus 366 ~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 366 YGFPDDITVIRVPAES 381 (401)
T ss_dssp CCSCTTCCEEEECGGG
T ss_pred cCCCCCccEEEeCHHH
Confidence 3 22345555555443
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.57 E-value=3e-06 Score=83.38 Aligned_cols=208 Identities=14% Similarity=0.139 Sum_probs=143.6
Q ss_pred cccccChhhhCCCCCCcEEEeecCCCcCcc-CccccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCCcccccccC
Q 010089 171 HIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYTNEMCKMCK 249 (518)
Q Consensus 171 ~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~ 249 (518)
++..+...+|.++ .|+.+.+..+ +..+ +..|.++.+|+.+++..++++.+|...-...+|+.+.+..+ + ..
T Consensus 145 ~i~~I~~~aF~~~-~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l---~~ 216 (401)
T 4fdw_A 145 GLKSIGDMAFFNS-TVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--L---KE 216 (401)
T ss_dssp TCCEECTTTTTTC-CCCEEECCTT--CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--C---CE
T ss_pred CccEECHHhcCCC-CceEEEeCCC--ccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc--h---he
Confidence 4778888888885 6999999864 4544 45688999999999999999999887666789999999865 3 77
Q ss_pred CchhhhcCCCCCcEEeccccCCCCccccccCCCCcchhhhhHHHhhcccccceEEEEEecCccccccccCcchhhcccee
Q 010089 250 IPEQLISSFSKLQVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQAL 329 (518)
Q Consensus 250 lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L 329 (518)
++...+.++++|+.+.+..+-. . .....+.. .+ |+.+
T Consensus 217 I~~~aF~~~~~L~~l~l~~~l~-~------------I~~~aF~~----~~--------------------------L~~i 253 (401)
T 4fdw_A 217 IGSQAFLKTSQLKTIEIPENVS-T------------IGQEAFRE----SG--------------------------ITTV 253 (401)
T ss_dssp ECTTTTTTCTTCCCEECCTTCC-E------------ECTTTTTT----CC--------------------------CSEE
T ss_pred ehhhHhhCCCCCCEEecCCCcc-C------------cccccccc----CC--------------------------ccEE
Confidence 8887789999999998865311 0 00011111 12 3333
Q ss_pred ecccCCCCCccc-cccccccccceEEeccCcCc-----cccccCccccccccEEEEecCCCCCCCc--ccccCCCccEEE
Q 010089 330 HIKDCNSLPLNL-LHLANMEHLQLFSIWDSNLE-----DWNVDCAGEVQKMLKLHFVNCSNVKDLT--WLVFVPNLKWLQ 401 (518)
Q Consensus 330 ~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~-----~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~ 401 (518)
.+.. .+..+. ..+..+++|+.+.+.++... .+....+..+++|+.+.+.+ .++.++ .+..+++|+.+.
T Consensus 254 ~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~ 329 (401)
T 4fdw_A 254 KLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLT 329 (401)
T ss_dssp EEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEE
T ss_pred EeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEE
Confidence 3321 233332 56778889999999887443 45566778899999999874 466654 466789999999
Q ss_pred EecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccccC
Q 010089 402 IFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKRIY 451 (518)
Q Consensus 402 L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 451 (518)
|.. .++.+.. ....++ +|+.+.+.+. .+..++
T Consensus 330 lp~--~l~~I~~--------------~aF~~~-~L~~l~l~~n-~~~~l~ 361 (401)
T 4fdw_A 330 IPA--NVTQINF--------------SAFNNT-GIKEVKVEGT-TPPQVF 361 (401)
T ss_dssp ECT--TCCEECT--------------TSSSSS-CCCEEEECCS-SCCBCC
T ss_pred ECc--cccEEcH--------------HhCCCC-CCCEEEEcCC-CCcccc
Confidence 954 3554432 144556 8999999874 444443
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.41 E-value=5e-07 Score=87.42 Aligned_cols=96 Identities=20% Similarity=0.169 Sum_probs=77.3
Q ss_pred ecCc-CCCCCCchhhhhh--eeeccc-ccccccChhhhCCCCCCcEEEeecCCCcCcc-CccccCccccCEEecCCCcCC
Q 010089 147 RAGV-GLTDAPKIEEWEG--TLLLEY-NHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVR 221 (518)
Q Consensus 147 ~~~~-~~~~~~~~~~~~~--~l~l~~-~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~ 221 (518)
..+. .+..+|....... .++|++ |.+..+++..|.++++|++|+|++| .+..+ |..|.+|++|++|+|++|.++
T Consensus 15 ~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 15 CTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp CCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred cCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCccc
Confidence 3444 5666776333322 389996 9999999888999999999999999 55555 557899999999999999999
Q ss_pred ccchhhhcCCCCcEeeccCCcc
Q 010089 222 GLPQELKALVNLRYLNLDYTNE 243 (518)
Q Consensus 222 ~lp~~i~~L~~L~~L~l~~~~~ 243 (518)
.+|..+.....|+.|++.+|..
T Consensus 94 ~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 94 SLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CCCSTTTCSCCCCEEECCSSCC
T ss_pred eeCHHHcccCCceEEEeeCCCc
Confidence 9998765555599999999875
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.37 E-value=2.3e-07 Score=78.88 Aligned_cols=62 Identities=18% Similarity=0.319 Sum_probs=26.8
Q ss_pred ccceEEeccCcCccccccCccccccccEEEEecCCCCCCC--cccccC----CCccEEEEecCcchhh
Q 010089 349 HLQLFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDL--TWLVFV----PNLKWLQIFNCDDMEE 410 (518)
Q Consensus 349 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l--~~l~~l----~~L~~L~L~~c~~l~~ 410 (518)
+|+.|++++|.+++.....+..+++|++|+|++|..+++- ..+..+ ++|++|+|++|..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 3455555555443333333344455555555555444321 122221 2455555555544443
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=5.6e-07 Score=76.46 Aligned_cols=87 Identities=21% Similarity=0.317 Sum_probs=70.0
Q ss_pred hccceeecccCCCCCccc-cccccccccceEEeccC-cCccccccCcccc----ccccEEEEecCCCCCC--CcccccCC
Q 010089 324 NITQALHIKDCNSLPLNL-LHLANMEHLQLFSIWDS-NLEDWNVDCAGEV----QKMLKLHFVNCSNVKD--LTWLVFVP 395 (518)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~-~l~~~~~~~~~~l----~~L~~L~l~~c~~l~~--l~~l~~l~ 395 (518)
..|++|++++|. ++... ..+..+++|+.|++++| .+++.....+..+ ++|++|+|++|+++++ +..+..++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 358999999997 44433 66788999999999999 7887555555553 4799999999998876 44677899
Q ss_pred CccEEEEecCcchhhh
Q 010089 396 NLKWLQIFNCDDMEEI 411 (518)
Q Consensus 396 ~L~~L~L~~c~~l~~~ 411 (518)
+|++|+|++|+.+++.
T Consensus 140 ~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEK 155 (176)
T ss_dssp TCCEEEEESCTTCCCH
T ss_pred CCCEEECCCCCCCCch
Confidence 9999999999988764
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.27 E-value=5.8e-08 Score=94.66 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=7.1
Q ss_pred ccccceEEeccCcCc
Q 010089 347 MEHLQLFSIWDSNLE 361 (518)
Q Consensus 347 l~~L~~L~l~~~~l~ 361 (518)
.++|+.|++++|.+.
T Consensus 238 ~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 238 HPSLELLHLYFNELS 252 (372)
T ss_dssp CSSCCEEECTTSSCC
T ss_pred CCCCCEEeccCCCCC
Confidence 344555555554443
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.27 E-value=1.3e-06 Score=84.47 Aligned_cols=162 Identities=15% Similarity=0.144 Sum_probs=88.5
Q ss_pred cccCccccCEEecCCCcC----------CccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCCC
Q 010089 203 GISSLVSLHHLDLSSTKV----------RGLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGSN 272 (518)
Q Consensus 203 ~i~~L~~L~~L~l~~~~l----------~~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 272 (518)
++..+++|+.|.+..... ..++..+..+++|+.|+++++.. ..++. + .+++|++|++..|...
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~----l~l~~--~-~~~~L~~L~L~~~~l~ 206 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN----LSIGK--K-PRPNLKSLEIISGGLP 206 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT----CBCCS--C-BCTTCSEEEEECSBCC
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC----ceecc--c-cCCCCcEEEEecCCCC
Confidence 344556666666643321 13555667788899999988743 23444 3 3788999998877652
Q ss_pred CccccccCCCCcchhhhhHHHhh--cccccceEEEEEecCccccccccCcchhhccceeecccCCCCCcccccc--cccc
Q 010089 273 HWPIAEEGNVLSDDAESLMKEIH--CLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHL--ANME 348 (518)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~~l~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~l--~~l~ 348 (518)
...+..+. .+++|+.|.+........ +...+..+...+ ..++
T Consensus 207 ---------------~~~l~~l~~~~lp~L~~L~L~~~~~~~~-------------------~~~~~~~l~~~l~~~~~p 252 (362)
T 2ra8_A 207 ---------------DSVVEDILGSDLPNLEKLVLYVGVEDYG-------------------FDGDMNVFRPLFSKDRFP 252 (362)
T ss_dssp ---------------HHHHHHHHHSBCTTCCEEEEECBCGGGT-------------------CCSCGGGTGGGSCTTTCT
T ss_pred ---------------hHHHHHHHHccCCCCcEEEEeccccccc-------------------cchhHHHHHHHHhcCCCC
Confidence 22233332 566777766653211000 000000110111 2467
Q ss_pred ccceEEeccCcCccccccCc---cccccccEEEEecCCCCCC-----Cc-ccccCCCccEEEEecCc
Q 010089 349 HLQLFSIWDSNLEDWNVDCA---GEVQKMLKLHFVNCSNVKD-----LT-WLVFVPNLKWLQIFNCD 406 (518)
Q Consensus 349 ~L~~L~l~~~~l~~~~~~~~---~~l~~L~~L~l~~c~~l~~-----l~-~l~~l~~L~~L~L~~c~ 406 (518)
+|+.|.+.+|.+....+..+ +.+++|++|+|+.+ .+.. +. .+..+++|+.|+|++|.
T Consensus 253 ~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 78888887775542111111 24678888888765 4443 11 23457888888888764
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.06 E-value=3.1e-06 Score=81.72 Aligned_cols=128 Identities=22% Similarity=0.278 Sum_probs=73.2
Q ss_pred ccceeecccCCCCCccccccccccccceEEeccCcCccccccCcc--ccccccEEEEecCC-------CCCCCc-cc--c
Q 010089 325 ITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAG--EVQKMLKLHFVNCS-------NVKDLT-WL--V 392 (518)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~--~l~~L~~L~l~~c~-------~l~~l~-~l--~ 392 (518)
.|+.|+++++..+. ++ .+ .+++|+.|.+..+.+.......+. .+++|++|+|+.+. ....+. .+ .
T Consensus 173 ~L~~L~L~g~~~l~-l~-~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~ 249 (362)
T 2ra8_A 173 LLNNLKIKGTNNLS-IG-KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD 249 (362)
T ss_dssp TCCEEEEECCBTCB-CC-SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTT
T ss_pred CCcEEEEeCCCCce-ec-cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcC
Confidence 45566665543221 11 12 267788888877765532222222 57888888886321 121221 11 3
Q ss_pred cCCCccEEEEecCcchhhhhcccchhccccccccCCCCccCCCcceeeccCCccccc-----cCCCCCCCCCcceEeccC
Q 010089 393 FVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSEMMGEPILFSELELLVISNASNLKR-----IYRDPLPFPHLERIGISE 467 (518)
Q Consensus 393 ~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~~~~L~~L~i~~ 467 (518)
.+|+|+.|.+.+|......... + .....+|+|++|+|+.+ .+.. +...+..+++|+.|++++
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~-----------l-a~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEM-----------F-LESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHH-----------H-HHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred CCCCcCEEeCCCCCCchHHHHH-----------H-HhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCC
Confidence 4789999999887654322110 0 01235789999999764 5554 333334678899999988
Q ss_pred C
Q 010089 468 C 468 (518)
Q Consensus 468 C 468 (518)
|
T Consensus 317 n 317 (362)
T 2ra8_A 317 N 317 (362)
T ss_dssp B
T ss_pred C
Confidence 7
No 154
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.04 E-value=3.4e-07 Score=89.19 Aligned_cols=88 Identities=22% Similarity=0.226 Sum_probs=49.9
Q ss_pred CCCCcEEEeecCCCcCc-cCccc----c-CccccCEEecCCCcCCc--cchhhhcCCCCcEeeccCCccccc-ccCCchh
Q 010089 183 LPSLRVLNLSVNHYLTE-LPVGI----S-SLVSLHHLDLSSTKVRG--LPQELKALVNLRYLNLDYTNEMCK-MCKIPEQ 253 (518)
Q Consensus 183 l~~Lr~L~L~~~~~~~~-lp~~i----~-~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~-~~~lp~~ 253 (518)
+++|+.|++++| .++. ....+ . ...+|++|++++|.+.. +..-...+++|++|++++|..-.. ...+...
T Consensus 71 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 356788888888 3432 12222 2 22678888888887764 222234456788888888754200 0011111
Q ss_pred hhcCCCCCcEEeccccCC
Q 010089 254 LISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 254 ~~~~l~~L~~L~l~~~~~ 271 (518)
+....++|++|++++|..
T Consensus 150 L~~~~~~L~~L~Ls~n~l 167 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPL 167 (372)
T ss_dssp HHSTTCCCCEEECCSSCC
T ss_pred HHhcCCccceeeCCCCCC
Confidence 013456788888877765
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.86 E-value=1.5e-05 Score=72.93 Aligned_cols=82 Identities=27% Similarity=0.289 Sum_probs=55.8
Q ss_pred CCCCCCcEEEeecCCCcCc---cCccccCccccCEEecCCCcCCccchhhhcCC--CCcEeeccCCcccccccCCc----
Q 010089 181 QSLPSLRVLNLSVNHYLTE---LPVGISSLVSLHHLDLSSTKVRGLPQELKALV--NLRYLNLDYTNEMCKMCKIP---- 251 (518)
Q Consensus 181 ~~l~~Lr~L~L~~~~~~~~---lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~--~L~~L~l~~~~~l~~~~~lp---- 251 (518)
.++++|+.|+|++| .+.. +|..+..+++|++|+|++|.++.+ ..+..+. +|++|++++|... ..+|
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~---~~~~~~~~ 241 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLC---DTFRDQST 241 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTG---GGCSSHHH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCc---cccCcchh
Confidence 46778888888888 4444 345566788888888888888776 3355555 7888888888654 3343
Q ss_pred --hhhhcCCCCCcEEecc
Q 010089 252 --EQLISSFSKLQVLRML 267 (518)
Q Consensus 252 --~~~~~~l~~L~~L~l~ 267 (518)
..++..+++|+.|+-.
T Consensus 242 y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 242 YISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHHCTTCCEESSC
T ss_pred HHHHHHHHCcccCeECCc
Confidence 1346677777777654
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.59 E-value=5.4e-05 Score=65.68 Aligned_cols=93 Identities=17% Similarity=0.141 Sum_probs=60.2
Q ss_pred hhhCCCCCCcEEEeecC-CCcC----ccCccccCccccCEEecCCCcCCc-----cchhhhcCCCCcEeeccCCcccccc
Q 010089 178 SFFQSLPSLRVLNLSVN-HYLT----ELPVGISSLVSLHHLDLSSTKVRG-----LPQELKALVNLRYLNLDYTNEMCKM 247 (518)
Q Consensus 178 ~~~~~l~~Lr~L~L~~~-~~~~----~lp~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~~ 247 (518)
..+...+.|++|+|++| .... .+...+...++|++|++++|.+.. +...+...++|++|++++|..-...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34677788888888877 3221 244455666788888888887764 4555666778888888888652100
Q ss_pred -cCCchhhhcCCCCCcEEec--cccCC
Q 010089 248 -CKIPEQLISSFSKLQVLRM--LHCGS 271 (518)
Q Consensus 248 -~~lp~~~~~~l~~L~~L~l--~~~~~ 271 (518)
..+... +...++|++|++ .+|..
T Consensus 110 ~~~l~~~-L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 110 ILALVEA-LQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp HHHHHHG-GGGCSSCCEEECCCCSSCC
T ss_pred HHHHHHH-HHhCCCceEEEecCCCCCC
Confidence 112232 566677888888 66665
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.50 E-value=0.0034 Score=61.40 Aligned_cols=44 Identities=11% Similarity=0.243 Sum_probs=24.2
Q ss_pred ccccChhhhCCCCCCcEEEeecCCCcCccC-ccccCccccCEEecCC
Q 010089 172 IEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDLSS 217 (518)
Q Consensus 172 i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~ 217 (518)
+..+...+|.++.+|+.+.+..+ ++.++ ..|.++.+|+.+++..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~ 103 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPD 103 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCC
Confidence 44555555666666666666533 33332 3355566666666643
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.41 E-value=0.0032 Score=61.65 Aligned_cols=90 Identities=12% Similarity=0.190 Sum_probs=39.3
Q ss_pred ccccChhhhCCCCCCcEEEeecCC--CcCccC-ccccCccccCEEecCCCcCCccch-hhhcCCCCcEeeccCCcccccc
Q 010089 172 IEEITESFFQSLPSLRVLNLSVNH--YLTELP-VGISSLVSLHHLDLSSTKVRGLPQ-ELKALVNLRYLNLDYTNEMCKM 247 (518)
Q Consensus 172 i~~~~~~~~~~l~~Lr~L~L~~~~--~~~~lp-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~ 247 (518)
++.+...+|.++.+|+.+.+..+. .++.+. ..|..+.+|+.+.+..+ ++.++. .+..+.+|+.+.+....
T Consensus 75 vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~----- 148 (394)
T 4gt6_A 75 VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGV----- 148 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTC-----
T ss_pred eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccccccee-----
Confidence 344444455555555555554431 122221 22334444444443322 233322 23445555555554321
Q ss_pred cCCchhhhcCCCCCcEEecc
Q 010089 248 CKIPEQLISSFSKLQVLRML 267 (518)
Q Consensus 248 ~~lp~~~~~~l~~L~~L~l~ 267 (518)
..++...+..+.+|+.+.+.
T Consensus 149 ~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 149 TSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp CEECTTTTTTCTTCCEEECC
T ss_pred eeecccceeccccccccccc
Confidence 33444445555555555554
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.38 E-value=0.00051 Score=67.33 Aligned_cols=59 Identities=14% Similarity=0.163 Sum_probs=29.0
Q ss_pred cccCccccCEEecCCCcCCccch-hhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEecc
Q 010089 203 GISSLVSLHHLDLSSTKVRGLPQ-ELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRML 267 (518)
Q Consensus 203 ~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~ 267 (518)
.+.++.+|+.+.+..+ +..++. .+..+.+|+.+++..+ + ..++...+.++.+|+.+.+.
T Consensus 157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~---~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--L---KIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--C---CEECTTTTTTCTTCCBCCCC
T ss_pred hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--c---eEeCchhhccccccceeecC
Confidence 4555556666655433 223332 2445556666655543 1 34444445555555555443
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.20 E-value=0.00017 Score=62.52 Aligned_cols=105 Identities=12% Similarity=0.113 Sum_probs=75.3
Q ss_pred eecccc-ccccc----ChhhhCCCCCCcEEEeecCCCcCc-----cCccccCccccCEEecCCCcCCc-----cchhhhc
Q 010089 165 LLLEYN-HIEEI----TESFFQSLPSLRVLNLSVNHYLTE-----LPVGISSLVSLHHLDLSSTKVRG-----LPQELKA 229 (518)
Q Consensus 165 l~l~~~-~i~~~----~~~~~~~l~~Lr~L~L~~~~~~~~-----lp~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~ 229 (518)
+++.+| .+... ....+...+.|++|+|++| .++. +...+...++|++|++++|.|.. +...+..
T Consensus 41 L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~ 119 (185)
T 1io0_A 41 VNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQS 119 (185)
T ss_dssp EECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGG
T ss_pred EEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHh
Confidence 777777 66531 2233777899999999999 4442 44456666899999999999886 6677888
Q ss_pred CCCCcEeec--cCCcccccc-cCCchhhhcCCCCCcEEeccccCC
Q 010089 230 LVNLRYLNL--DYTNEMCKM-CKIPEQLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 230 L~~L~~L~l--~~~~~l~~~-~~lp~~~~~~l~~L~~L~l~~~~~ 271 (518)
.++|++|++ ++|..-... ..+.. .+...++|++|++.+|..
T Consensus 120 n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 120 NTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSH
T ss_pred CCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCC
Confidence 899999999 777542100 11222 366678999999998865
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.14 E-value=0.00053 Score=62.67 Aligned_cols=85 Identities=21% Similarity=0.239 Sum_probs=58.9
Q ss_pred hCCCCCCcE--EEeecCCCcCccCcc----ccCccccCEEecCCCcCCcc---chhhhcCCCCcEeeccCCcccccccCC
Q 010089 180 FQSLPSLRV--LNLSVNHYLTELPVG----ISSLVSLHHLDLSSTKVRGL---PQELKALVNLRYLNLDYTNEMCKMCKI 250 (518)
Q Consensus 180 ~~~l~~Lr~--L~L~~~~~~~~lp~~----i~~L~~L~~L~l~~~~l~~l---p~~i~~L~~L~~L~l~~~~~l~~~~~l 250 (518)
|...+.|+. ++++.| ....++.. ..++++|+.|+|++|.++.+ |..+.++++|++|+|++|.. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N-~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i----~~~ 211 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLN-RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL----KSE 211 (267)
T ss_dssp GGGCHHHHHTTCCCCTT-SHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC----CSG
T ss_pred cCCCcchhhcCccccCC-HHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc----CCc
Confidence 333344444 455555 33333322 25688999999999998875 46678999999999999976 444
Q ss_pred chhhhcCCC--CCcEEeccccCC
Q 010089 251 PEQLISSFS--KLQVLRMLHCGS 271 (518)
Q Consensus 251 p~~~~~~l~--~L~~L~l~~~~~ 271 (518)
.. +..+. +|++|++.+|..
T Consensus 212 ~~--l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 212 RE--LDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp GG--GGGGTTSCCSEEECTTSTT
T ss_pred hh--hhhcccCCcceEEccCCcC
Confidence 32 44444 999999999876
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.01 E-value=0.011 Score=57.66 Aligned_cols=89 Identities=13% Similarity=0.170 Sum_probs=55.9
Q ss_pred cccccChhhhCCCCCCcEEEeecCCCcCccC-ccccCccccCEEecCCCcCCccch-hhhcCCCCcEeeccCCccccccc
Q 010089 171 HIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDLSSTKVRGLPQ-ELKALVNLRYLNLDYTNEMCKMC 248 (518)
Q Consensus 171 ~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~ 248 (518)
.+..+...+|..+..|+.+.+..+ +..++ ..+..+.+|+.+.+..+ +..++. .+..+.+|+.+.+..+ + .
T Consensus 101 ~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~---~ 172 (394)
T 4gt6_A 101 CVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--V---T 172 (394)
T ss_dssp CCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--C---C
T ss_pred eeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccccccccce-eeeecccceecccccccccccce--e---e
Confidence 366677777888888888776654 33333 34677788888888643 334433 4566778888877654 2 4
Q ss_pred CCchhhhcCCCCCcEEeccc
Q 010089 249 KIPEQLISSFSKLQVLRMLH 268 (518)
Q Consensus 249 ~lp~~~~~~l~~L~~L~l~~ 268 (518)
.+....+. ..+|+.+.+..
T Consensus 173 ~I~~~aF~-~~~l~~i~ip~ 191 (394)
T 4gt6_A 173 AIEERAFT-GTALTQIHIPA 191 (394)
T ss_dssp EECTTTTT-TCCCSEEEECT
T ss_pred Eecccccc-ccceeEEEECC
Confidence 45554343 35677776654
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.66 E-value=0.06 Score=52.07 Aligned_cols=68 Identities=13% Similarity=0.140 Sum_probs=44.3
Q ss_pred ccccccChhhhCCCCCCcEEEeecCCCcCccCc-cccCccccCEEecCCCcCCccchhhhcCCCCcEeeccCC
Q 010089 170 NHIEEITESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLHHLDLSSTKVRGLPQELKALVNLRYLNLDYT 241 (518)
Q Consensus 170 ~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~ 241 (518)
..++.++..+|.++.+|+.+.+..+ +..++. .+.+. +|+.+.+.. +++.++...-...+|+.+.+..+
T Consensus 55 ~~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~~ 123 (379)
T 4h09_A 55 SGITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDDFEFPGA 123 (379)
T ss_dssp TTEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSEEECCTT
T ss_pred CCccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCc-eeeEeccceeccCCcccccCCCc
Confidence 4577888888999999999999754 444433 34444 566666643 35555554434457787777654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.35 E-value=0.027 Score=45.11 Aligned_cols=52 Identities=29% Similarity=0.386 Sum_probs=25.4
Q ss_pred EEEeecCCCcC--ccCccccCccccCEEecCCCcCCccchh-hhcCCCCcEeeccCCc
Q 010089 188 VLNLSVNHYLT--ELPVGISSLVSLHHLDLSSTKVRGLPQE-LKALVNLRYLNLDYTN 242 (518)
Q Consensus 188 ~L~L~~~~~~~--~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 242 (518)
+++.++. .++ .+|..+. .+|++|+|++|.|+.+|.. +..+++|++|+|++|.
T Consensus 12 ~v~Cs~~-~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSS-CCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCC-CCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 3444444 344 4554332 3455555555555555443 3445555555555553
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.75 E-value=0.036 Score=44.37 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=46.9
Q ss_pred CEEecCCCcCC--ccchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCC
Q 010089 211 HHLDLSSTKVR--GLPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 211 ~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~ 271 (518)
..++-++..++ .+|..+. .+|++|+|++|.. ..+|.+++..+++|++|++.+|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l----~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNL----TALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCC----SSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcC----CccChhhhhhccccCEEEecCCCe
Confidence 46788888888 8987643 4799999999976 889998889999999999998876
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.30 E-value=0.2 Score=48.22 Aligned_cols=90 Identities=16% Similarity=0.263 Sum_probs=53.5
Q ss_pred ccccChhhhCCCCCCcEEEeecCCCcCcc-CccccCccccCEEecCCCcCCccch-hhhcCCCCcEeeccCCcccccccC
Q 010089 172 IEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVRGLPQ-ELKALVNLRYLNLDYTNEMCKMCK 249 (518)
Q Consensus 172 i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~ 249 (518)
+..+....|.++..|+.+.+..+ +..+ ...+.++.+|+.+.+.. .++.++. .+..+.+|+.+.+.++.. ..
T Consensus 228 ~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i----~~ 300 (379)
T 4h09_A 228 VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAI----ET 300 (379)
T ss_dssp CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTC----CE
T ss_pred eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccc-cceecccccccccccccccccccccc----ce
Confidence 44555556777777777777654 3333 23455666677766643 2444443 355667777777765533 45
Q ss_pred CchhhhcCCCCCcEEeccc
Q 010089 250 IPEQLISSFSKLQVLRMLH 268 (518)
Q Consensus 250 lp~~~~~~l~~L~~L~l~~ 268 (518)
++...+.++.+|+.+.+..
T Consensus 301 I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 301 LEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp ECTTTTTTCTTCCEEECCT
T ss_pred ehhhhhcCCCCCCEEEcCc
Confidence 6655566777777776653
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.27 E-value=0.3 Score=41.96 Aligned_cols=91 Identities=11% Similarity=0.121 Sum_probs=59.2
Q ss_pred hhhCCCCCCcEEEeecCCCcC-----ccCccccCccccCEEecCCCcCCc-----cchhhhcCCCCcEeeccCCcccccc
Q 010089 178 SFFQSLPSLRVLNLSVNHYLT-----ELPVGISSLVSLHHLDLSSTKVRG-----LPQELKALVNLRYLNLDYTNEMCKM 247 (518)
Q Consensus 178 ~~~~~l~~Lr~L~L~~~~~~~-----~lp~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~~ 247 (518)
..+.+-+.|+.|+|+++..++ .+-+.+..-..|+.|+|++|.+.. +-+.+..=+.|++|+|++|.+-..+
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 345667788999998752333 234455566789999999988774 5555666788999999988652110
Q ss_pred -cCCchhhhcCCCCCcEEecccc
Q 010089 248 -CKIPEQLISSFSKLQVLRMLHC 269 (518)
Q Consensus 248 -~~lp~~~~~~l~~L~~L~l~~~ 269 (518)
..+-. .+..-+.|++|++.++
T Consensus 115 a~ala~-aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 115 LARLLR-STLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHH-HTTTTCCCSEEECCCC
T ss_pred HHHHHH-HHhhCCceeEEECCCC
Confidence 11122 2444556899988764
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.64 E-value=0.32 Score=41.83 Aligned_cols=67 Identities=15% Similarity=0.082 Sum_probs=43.3
Q ss_pred cCccccCEEecCCC-cCCc-----cchhhhcCCCCcEeeccCCcccccccCCchhhhcCCCCCcEEeccccCC
Q 010089 205 SSLVSLHHLDLSST-KVRG-----LPQELKALVNLRYLNLDYTNEMCKMCKIPEQLISSFSKLQVLRMLHCGS 271 (518)
Q Consensus 205 ~~L~~L~~L~l~~~-~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~~~~lp~~~~~~l~~L~~L~l~~~~~ 271 (518)
.+-..|+.|+|+++ .|.. +-+.+..-+.|+.|+|++|..-.....--.+.+..-+.|++|++..|.+
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 34567889999875 6653 4555666778999999888653111111112244557789999888876
No 169
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=85.61 E-value=1.1 Score=42.40 Aligned_cols=115 Identities=13% Similarity=0.117 Sum_probs=66.0
Q ss_pred CcccCCCCchHHHHHHHHhcCCCChhHHHHHHHHHhccCCcccchHHHHHHHHh-hhcC--CCCchhhhhHhhhhcccCC
Q 010089 1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLK-FSYD--SLPNDELRSCLLYCCLFPE 77 (518)
Q Consensus 1 I~~~c~GlPLai~~ig~~L~~~~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~-~sY~--~L~~~~lk~cfl~~a~fp~ 77 (518)
|+++|+|.|+++..++..+....+...|.. +..+. ....+...+. +.|+ .|+. ..+..+..+|.
T Consensus 235 i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~l~~~~~~~~~l~~-~~~~~l~~la~--- 301 (357)
T 2fna_A 235 VYEKIGGIPGWLTYFGFIYLDNKNLDFAIN--QTLEY-------AKKLILKEFENFLHGREIARK-RYLNIMRTLSK--- 301 (357)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHCCHHHHHH--HHHHH-------HHHHHHHHHHHHHTTCGGGHH-HHHHHHHHHTT---
T ss_pred HHHHhCCCHHHHHHHHHHHccccchHHHHH--HHHHH-------HHHHHHHHHHHHhhccccccH-HHHHHHHHHHc---
Confidence 356899999999999987753233333321 11110 0001111121 2222 5777 78999999998
Q ss_pred CCccChHHHHHHHH-HhCC-CcccchhHHHHHHHHhcccccCCCcee-cchHHHHH
Q 010089 78 DSEIRKTDLIVYWE-SEGL-LDSIGGWDVLGALVRACLLEEGGDHVK-MHDMIRDM 130 (518)
Q Consensus 78 ~~~i~~~~Li~~Wi-a~g~-i~~~~~~~~~~~L~~~sli~~~~~~~~-mHdl~~dl 130 (518)
+. ....+....- ..|. +.......+++.|.++++|...+..|+ .|.++++.
T Consensus 302 g~--~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~ 355 (357)
T 2fna_A 302 CG--KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLA 355 (357)
T ss_dssp CB--CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHH
T ss_pred CC--CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHh
Confidence 32 4455543221 2242 333355778999999999987654466 46677654
No 170
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=78.95 E-value=2.2 Score=40.09 Aligned_cols=113 Identities=12% Similarity=0.069 Sum_probs=62.2
Q ss_pred cccCCCCchHHHHHHHHhcCCCChhHHH-HHHHHHhccCCcccchHHHHHHHHhhhcCCCCchhhhhHhhhhcccCCCCc
Q 010089 2 ASQCHGLPLALETVGQAMAGKEFPEEWR-RAIEIISTSASKFEDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLFPEDSE 80 (518)
Q Consensus 2 ~~~c~GlPLai~~ig~~L~~~~~~~~W~-~~l~~l~~~~~~~~~~~~~i~~~L~~sY~~L~~~~lk~cfl~~a~fp~~~~ 80 (518)
++.|+|.|+++..++..+....+...|. .+.+.... ....++. .+.+ . +. ..+..+..+|. + .
T Consensus 232 ~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~---~l~~-~-~~-~~~~~l~~la~---g-~ 295 (350)
T 2qen_A 232 VELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKG------LIMGELE---ELRR-R-SP-RYVDILRAIAL---G-Y 295 (350)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH------HHHHHHH---HHHH-H-CH-HHHHHHHHHHT---T-C
T ss_pred HHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHH------HHHHHHH---HHHh-C-Ch-hHHHHHHHHHh---C-C
Confidence 4679999999999987653212222221 11111000 0011221 1222 2 66 78999999987 3 2
Q ss_pred cChHHHHHHHHHh-CCCcccchhHHHHHHHHhcccccCCCceec-chHHHHH
Q 010089 81 IRKTDLIVYWESE-GLLDSIGGWDVLGALVRACLLEEGGDHVKM-HDMIRDM 130 (518)
Q Consensus 81 i~~~~Li~~Wia~-g~i~~~~~~~~~~~L~~~sli~~~~~~~~m-Hdl~~dl 130 (518)
+....+.....+. |-+.......+++.|.+.+++...+..+.+ |.++++.
T Consensus 296 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~ 347 (350)
T 2qen_A 296 NRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATV 347 (350)
T ss_dssp CSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHH
Confidence 4555555544222 112323456789999999999875444555 5566654
No 171
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=47.99 E-value=17 Score=18.76 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=16.0
Q ss_pred ccCCCCchHHHHHHHHhcC
Q 010089 3 SQCHGLPLALETVGQAMAG 21 (518)
Q Consensus 3 ~~c~GlPLai~~ig~~L~~ 21 (518)
+|-.-+|||..+.++.+..
T Consensus 6 rkrrklplavav~agv~~a 24 (28)
T 2vda_B 6 RKRRKLPLAVAVAAGVMSA 24 (28)
T ss_dssp CCCCCCTHHHHHHHHTTCC
T ss_pred eccccCchHHHHHHHHhHh
Confidence 4566799999999998865
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=43.48 E-value=11 Score=34.78 Aligned_cols=17 Identities=29% Similarity=0.221 Sum_probs=7.0
Q ss_pred chhHHHH-HHHHhccccc
Q 010089 100 GGWDVLG-ALVRACLLEE 116 (518)
Q Consensus 100 ~~~~~~~-~L~~~sli~~ 116 (518)
.|.+|++ ++.+|++||+
T Consensus 307 ~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 307 LAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHHHTTCCCCC------
T ss_pred HHHHHHhcCCCCCCCCCC
Confidence 4566665 6667777663
No 173
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=42.56 E-value=28 Score=25.77 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=31.6
Q ss_pred cccccccChhhhCCCCCCcEEEeecCCCcCcc-CccccCccccCEEecCC
Q 010089 169 YNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSS 217 (518)
Q Consensus 169 ~~~i~~~~~~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~ 217 (518)
+..+..+....|.++..|+.+.+-.+ ++.+ ...|.++.+|+.+.+.+
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 34566677777888888888888765 3333 34566677777776654
No 174
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=36.82 E-value=22 Score=34.03 Aligned_cols=65 Identities=15% Similarity=-0.064 Sum_probs=41.5
Q ss_pred HHHhhhcCCCCchhhhhHhhhhcccC--CCCccChHHHHHHHH--H---hCC--CcccchhHHHHHHHHhccccc
Q 010089 51 SRLKFSYDSLPNDELRSCLLYCCLFP--EDSEIRKTDLIVYWE--S---EGL--LDSIGGWDVLGALVRACLLEE 116 (518)
Q Consensus 51 ~~L~~sY~~L~~~~lk~cfl~~a~fp--~~~~i~~~~Li~~Wi--a---~g~--i~~~~~~~~~~~L~~~sli~~ 116 (518)
..+.-+++.||. +.+.++..+|.+. .+..+...++...+. + .|. +.......+++.|.+.++|..
T Consensus 297 ~~~~~~l~~l~~-~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~ 370 (412)
T 1w5s_A 297 SIQTHELEALSI-HELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDA 370 (412)
T ss_dssp ---CCSSSSSCH-HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred chHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEe
Confidence 345567889999 8999988888654 334566666655442 2 122 111244678999999999976
No 175
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=22.18 E-value=2.1e+02 Score=20.11 Aligned_cols=84 Identities=12% Similarity=0.143 Sum_probs=45.8
Q ss_pred CCCCchHHHHHHHHhcCCCChhHHHHHHHHHhccCCcccchHHHHHHHHhhhcCCCCchhhhhHhhhhcccCCCCccChH
Q 010089 5 CHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLFPEDSEIRKT 84 (518)
Q Consensus 5 c~GlPLai~~ig~~L~~~~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~~sY~~L~~~~lk~cfl~~a~fp~~~~i~~~ 84 (518)
|.+.|=-+.+++..+......++++.+.+.+.......-+.+ ++..+++-....++.++++..|..+-. -.+-.|..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~-El~~~l~~~g~~~~~~e~~~l~~~~D~-d~dG~I~~~ 85 (94)
T 2kz2_A 8 HHGSSGENLYFQSLMKDTDSEEEIREAFRVEDKDGNGYISAA-ELRHVMTNLGEKLTDEEVDEMIREADI-DGDGQVNYE 85 (94)
T ss_dssp SCCSSCCTHHHHHHHCCCSCHHHHHHHHHHHCTTCCSCBCHH-HHHHHHHHHTCCCCHHHHHHHHHHHCT-TCSSSBCHH
T ss_pred ccCcccHHHHHHHHhcCCCHHHHHHHHHHHHCCCCcCcCCHH-HHHHHHHHhCCCCCHHHHHHHHHHhCC-CCCCcEeHH
Confidence 444455556777888766777888888887765433222222 566666554445555455555544322 222335555
Q ss_pred HHHHHH
Q 010089 85 DLIVYW 90 (518)
Q Consensus 85 ~Li~~W 90 (518)
+.+.++
T Consensus 86 EF~~~~ 91 (94)
T 2kz2_A 86 EFVQMM 91 (94)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
Done!