Query 010090
Match_columns 518
No_of_seqs 48 out of 50
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 19:41:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dix_A Plectin-related protein 99.9 3.5E-25 1.2E-29 211.3 18.2 187 312-506 15-210 (230)
2 3o0z_A RHO-associated protein 54.8 67 0.0023 30.1 9.4 55 51-105 15-83 (168)
3 2q6q_A Spindle POLE BODY compo 46.2 28 0.00096 28.8 4.8 29 50-78 4-39 (74)
4 3he5_B Synzip2; heterodimeric 45.4 33 0.0011 26.3 4.7 40 66-105 6-45 (52)
5 2dfs_A Myosin-5A; myosin-V, in 43.8 63 0.0022 37.2 9.0 29 161-189 1020-1048(1080)
6 3mq7_A Bone marrow stromal ant 43.7 18 0.00062 32.4 3.6 41 56-96 71-111 (121)
7 3pl0_A Uncharacterized protein 38.8 78 0.0027 30.8 7.5 123 376-504 91-247 (254)
8 4f9p_D 103.2 anti-BTN3A1 antib 38.7 3E+02 0.01 27.2 12.8 57 319-379 13-86 (254)
9 4hci_A Cupredoxin 1; structura 38.4 23 0.0008 28.3 3.3 32 458-490 24-55 (100)
10 3oja_B Anopheles plasmodium-re 37.1 88 0.003 31.9 8.0 8 87-94 526-533 (597)
11 3tnu_B Keratin, type II cytosk 35.7 66 0.0022 27.8 5.9 48 58-105 31-78 (129)
12 1gk7_A Vimentin; intermediate 34.4 34 0.0012 24.9 3.2 34 62-95 5-38 (39)
13 4e81_A Chaperone protein DNAK; 33.8 64 0.0022 30.2 5.9 31 85-115 173-203 (219)
14 3oja_B Anopheles plasmodium-re 33.0 10 0.00035 38.8 0.4 27 165-191 552-578 (597)
15 2dfs_A Myosin-5A; myosin-V, in 32.1 1.3E+02 0.0046 34.6 9.2 18 57-74 985-1002(1080)
16 2l2l_B Methyl-CPG-binding doma 31.9 25 0.00085 25.7 2.1 21 57-77 11-31 (36)
17 1i84_S Smooth muscle myosin he 31.9 97 0.0033 35.6 8.0 14 62-75 863-876 (1184)
18 3tnu_A Keratin, type I cytoske 31.1 49 0.0017 28.8 4.3 49 58-106 33-81 (131)
19 2gtv_X CM, chorismate mutase; 30.2 1.6E+02 0.0054 25.1 7.2 75 64-138 4-103 (104)
20 4ani_A Protein GRPE; chaperone 28.4 4E+02 0.014 25.5 10.8 63 140-210 109-175 (213)
21 3efg_A Protein SLYX homolog; x 28.3 77 0.0026 25.9 4.8 34 88-124 11-46 (78)
22 4h22_A Leucine-rich repeat fli 27.7 1.2E+02 0.0042 26.5 6.1 61 56-133 37-97 (103)
23 3kbt_A Beta-I spectrin, spectr 27.7 3.7E+02 0.013 24.9 13.8 127 50-189 38-169 (326)
24 2rlo_A Centaurin-gamma 1; spli 27.2 62 0.0021 26.5 4.1 41 470-510 87-127 (128)
25 3dde_A TENA/THI-4 protein, dom 26.5 57 0.0019 30.0 4.1 52 93-144 179-236 (239)
26 1nkw_E 50S ribosomal protein L 25.3 1.1E+02 0.0037 29.4 5.9 53 429-482 107-165 (212)
27 2etd_A LEMA protein; bromodoma 25.2 52 0.0018 30.2 3.6 48 132-191 75-123 (171)
28 1sf9_A YFHH hypothetical prote 25.2 77 0.0026 28.7 4.5 33 60-94 36-68 (128)
29 3iyk_A VP5; icosahedral virus; 24.8 5.7E+02 0.02 27.8 11.7 117 41-182 82-207 (526)
30 4fla_A Regulation of nuclear P 24.4 2E+02 0.0067 26.1 7.2 110 18-146 37-147 (152)
31 2lf0_A Uncharacterized protein 24.0 80 0.0027 28.4 4.4 36 62-97 9-56 (123)
32 1m1j_B Fibrinogen beta chain; 22.1 4.6E+02 0.016 27.8 10.4 19 61-79 98-116 (464)
33 1iby_A Nitrosocyanin; RED copp 21.6 2.2E+02 0.0074 22.9 6.3 31 459-490 35-65 (112)
34 3hnw_A Uncharacterized protein 21.4 1.9E+02 0.0066 25.7 6.4 41 57-97 83-123 (138)
35 2cx7_A Sterol carrier protein 20.7 48 0.0016 28.5 2.3 50 306-368 29-81 (130)
36 1u4q_A Spectrin alpha chain, b 20.6 5E+02 0.017 23.8 12.0 126 50-188 37-166 (322)
No 1
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}
Probab=99.93 E-value=3.5e-25 Score=211.31 Aligned_cols=187 Identities=20% Similarity=0.322 Sum_probs=158.8
Q ss_pred ceeecccCCCcceee--eccccCCceeeeeEEEEEc-cCCceeeecCCCCCceeeeccccCceEEEEEEecCCCCCccce
Q 010090 312 FQIIGEATPGEKLLG--CGYPVRGTTLCMFQWVRHL-QDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGEL 388 (518)
Q Consensus 312 l~I~Gda~pG~~L~a--cG~~inGTtlC~FQWvRhl-eDGt~~~IeGA~~p~Y~vTADDVd~liAvec~PmDd~grkGEl 388 (518)
+.+-|.-..|.-|+. |--..--.|+|+|||+|++ ++|+.+.|.||+.|.|.++++|||.+|++||+| .|+.
T Consensus 15 y~L~G~e~LGs~L~i~~~~~~~~dlS~CsiQW~R~~~egs~re~IsGAtk~~YAPeP~DVGrlLqadi~~------~G~k 88 (230)
T 4dix_A 15 YEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELISGATKSVYAPEPFDVGRVLHADIIY------DGHS 88 (230)
T ss_dssp EEEESCCBTTSCEEEEESSTTSCCGGGSEEEEEEECTTSSSEEECTTCCSSEECCCGGGBTSEEEEEEEE------TTEE
T ss_pred eeecchhhccceEEEEeccCCCCcccccceEEEEeecCCCceeEEeccccccccCCccccccEEEEEEec------CCcE
Confidence 345566677776654 3222334799999999999 889999999999999999999999999999998 3899
Q ss_pred eeeecccCCccccCccchHHHHHHHHhcceEEEEEeecCcccccc-ceEEEEeecceEEEeCC-CcceeeeecCCCceeE
Q 010090 389 VRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWE-QATLILRRSIYRIKIDS-TEAIIEERFPKEVSIK 466 (518)
Q Consensus 389 Vk~~aNd~~kI~cDpeMq~~I~~~l~~G~Asf~V~ll~~~~d~wE-~atL~IrRegY~IK~~~-~~~~I~EKfs~~~~Ik 466 (518)
+.+|+| +||+|||+|++.|++++.+|.+.|.|.++...-+.|+ ++++++.+-.++||-.. ..++++|+||++.++=
T Consensus 89 ~t~~T~--gpId~a~GL~~yVEaL~rk~~tEFNVvv~q~nG~d~~s~sihvl~vgk~RiKL~kg~~t~akE~YSssmQLC 166 (230)
T 4dix_A 89 LSLSTV--GKIDPAAGLGSYVEALVRKHDVDFNVVVTQMSGEDHTSESIHLFHVGKMRIKLCKGKTVIAKEYYSSAMQLC 166 (230)
T ss_dssp EEEEEE--EEBBCCTTHHHHHHHHHTTSEEEEEEEEEEETTEECCCCCEEEEEEESSEEEEEETTEEEEEEECCTTCEEE
T ss_pred EEEEec--CCCCCCchhHHHHHHHhhcCCCcEEEEEEEEcCccCccceEEEEEeccEEEEEecCceEEeeeeecccceee
Confidence 999999 9999999999999999999999999999955567888 99999999999999985 4499999999987654
Q ss_pred ecCC--C--cceEEEEecCCceeeeecCCCCCchhhHHHHHHHH
Q 010090 467 VPCG--L--STQFVLTFSDGSSYPFSTYNVRMRDTLVLTMRMLQ 506 (518)
Q Consensus 467 Ip~g--~--~~qfvI~~sdG~e~~Lr~~n~~~RD~iVLTlR~F~ 506 (518)
=-.| + +.-.+-.-.-|..+.|-++..|.|..+++.-|-|-
T Consensus 167 GvRggg~aA~~AlfWq~rkgls~~L~fEseReRNaAImLARrfA 210 (230)
T 4dix_A 167 GVRGGGNAAAQALYWQAKKGVSFVIAFESERERNAAIMLARRFA 210 (230)
T ss_dssp ECSSCTTSGGGEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred eccCCcccccceeeEeecCCcEEEEEeccchhhhhHHHHHHHHh
Confidence 3333 2 34455566889999999999999999999999984
No 2
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=54.82 E-value=67 Score=30.07 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=40.4
Q ss_pred hhhHHHHhhccHHHHHHHHHHHHHHhhh---------h-----hhhhcchhhhHHHHhHHHHHHhHHhh
Q 010090 51 AMELYSRARMQKEEIHSLRQQIAVACLK---------E-----LQLQNEKYTLERKVSELRMAIDEKQN 105 (518)
Q Consensus 51 ~~~l~~~~r~~eeeI~~Lrk~Lad~s~K---------e-----~Qll~EK~vLErriA~mR~A~DqqQq 105 (518)
-.++=.+.|..-|--..|||.-++++.. | .+|.+.|-.||+-++.|.-+.++...
T Consensus 15 L~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~ 83 (168)
T 3o0z_A 15 LEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERR 83 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666667777888888877643 3 45778899999999999998887653
No 3
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=46.19 E-value=28 Score=28.78 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=23.3
Q ss_pred hhhhHHHHhhccHHHHH-------HHHHHHHHHhhh
Q 010090 50 EAMELYSRARMQKEEIH-------SLRQQIAVACLK 78 (518)
Q Consensus 50 ~~~~l~~~~r~~eeeI~-------~Lrk~Lad~s~K 78 (518)
.++||..+++++.+||. +||.+|--|+.=
T Consensus 4 QNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtel 39 (74)
T 2q6q_A 4 QNKELNFKLREKQNEIFELKKIAETLRSKLEKYVDI 39 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999995 567777777653
No 4
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=45.38 E-value=33 Score=26.28 Aligned_cols=40 Identities=33% Similarity=0.423 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhh
Q 010090 66 HSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQN 105 (518)
Q Consensus 66 ~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~A~DqqQq 105 (518)
.-|||+||..--.-+||-.+..-|||-||.||=-+-.-.+
T Consensus 6 aylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 4689999988888899999999999999999965544333
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=43.78 E-value=63 Score=37.18 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=20.1
Q ss_pred cchhhhhhHHHHHHHHHHHHHhhhhhhcc
Q 010090 161 NASAISNTVKHLYDQLQSQIRTSYDRIRD 189 (518)
Q Consensus 161 dAqSIvs~vKvL~~~Lq~kl~~~e~klke 189 (518)
+-+..|++++..-+.|+.++..++..+.+
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~~~~~~ 1048 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELNRRIHD 1048 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33477888888888888877777754433
No 6
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=43.68 E-value=18 Score=32.41 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=35.7
Q ss_pred HHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHH
Q 010090 56 SRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSEL 96 (518)
Q Consensus 56 ~~~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~m 96 (518)
.++++.+.||..|..+|-|+|.+=-+|+.|...|--||+.-
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~ 111 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADK 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence 46888999999999999999999999999999998888753
No 7
>3pl0_A Uncharacterized protein; quorum sensing, biofilm formation, double-stranded beta-HELI structural genomics; HET: MSE; 1.91A {Methylibium petroleiphilum}
Probab=38.75 E-value=78 Score=30.82 Aligned_cols=123 Identities=16% Similarity=0.126 Sum_probs=77.5
Q ss_pred EEecCCCCCccceeeeecccCCccccCccchHHHHHHHH-----hcc--eEEEEE-----eecCccc-------------
Q 010090 376 CIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYIS-----RGH--ATFSVL-----MLMDSSE------------- 430 (518)
Q Consensus 376 c~PmDd~grkGElVk~~aNd~~kI~cDpeMq~~I~~~l~-----~G~--Asf~V~-----ll~~~~d------------- 430 (518)
+|+.|=+--.|.+++.|.-=..-+.-+|.||+.|..... .++ ..+.|. .......
T Consensus 91 ~Qs~~~N~~~Ggi~R~F~pl~~~~~~~p~~~~Ll~~~~~~~~~~~~~~~~~w~I~vHq~Ri~a~~~~g~ptPEGiHrDG~ 170 (254)
T 3pl0_A 91 WQPTTYNALHGGMERWFEPLSNEMIHLPSWSALLVALGELFAKLRAPQGGRWYIEAHPFRIDTEGGVGRPTPEGAHRDGV 170 (254)
T ss_dssp EECSSTTCSSCSEEECCCBCCHHHHTSHHHHHHHHHHHHHHHHHSCCGGGEEEEEEEEEEEETTSSCCCCCTTCSBCCSS
T ss_pred cCchhcccccCCeEEECCCcchhhhcCHHHHHHHHHHHHHhhhccCCcCCceEEEEEEEEEEEcCCCCccCCcccccCCC
Confidence 355555566789999998877778888999999987543 333 233322 2211111
Q ss_pred cccceEEEEeecceEEEeCCCcceeeeecCCCceeEecCCCcceEEEEecCCceeeeec---CC------CCCchhhHHH
Q 010090 431 NWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVLTFSDGSSYPFST---YN------VRMRDTLVLT 501 (518)
Q Consensus 431 ~wE~atL~IrRegY~IK~~~~~~~I~EKfs~~~~IkIp~g~~~qfvI~~sdG~e~~Lr~---~n------~~~RD~iVLT 501 (518)
.|- ++++|.|.+.. |+...|-+.- ....+..---++.+++|+......|..++ .+ +..||++|+|
T Consensus 171 d~v-~v~lv~R~Ni~----GGet~I~~~~-~~~~~~~~l~~p~d~llv~D~~~~H~vTpI~~~~~~~~~~~g~RDvlVvt 244 (254)
T 3pl0_A 171 DFV-AVVFIGRQGVR----GGETRVFDAA-GPQGVRFTLEQPWTVLLLDDQQVIHESTPLLPLDPADPAVPAHRDTLVLT 244 (254)
T ss_dssp SEE-EEEEEEEESEE----ECCEEEEETT-SSEEEEECCCSTTCEEEEETTTEEEEECCEEESCTTCTTSCCEEEEEEEE
T ss_pred CEE-EEEEecCCccc----cceEEEEcCC-CCccceeEecCCCcEEEEeCCcccCCCCccccCCCCCCCCceEEEEEEEE
Confidence 344 56777876543 3444443321 12334444678899999998888888775 33 3569999999
Q ss_pred HHH
Q 010090 502 MRM 504 (518)
Q Consensus 502 lR~ 504 (518)
+|.
T Consensus 245 f~~ 247 (254)
T 3pl0_A 245 YRS 247 (254)
T ss_dssp EES
T ss_pred ecC
Confidence 864
No 8
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}
Probab=38.69 E-value=3e+02 Score=27.15 Aligned_cols=57 Identities=21% Similarity=0.492 Sum_probs=35.9
Q ss_pred CCCcce----eeeccccCCceeeeeEEEEEc-------------cCCceeeecCCCCCceeeeccccCceEEEEEEec
Q 010090 319 TPGEKL----LGCGYPVRGTTLCMFQWVRHL-------------QDGTRHYIEGATNPEYVVTADDVDKLIAVECIPM 379 (518)
Q Consensus 319 ~pG~~L----~acG~~inGTtlC~FQWvRhl-------------eDGt~~~IeGA~~p~Y~vTADDVd~liAvec~Pm 379 (518)
-||+-| .|+||+++. .-+-|||+- .+|...|-+..++ .++||.|.-.+.+-++..-|
T Consensus 13 kPG~Sl~lSC~~SG~tf~~---y~~~WvRQaPGkgLEWvg~I~~~~g~t~Y~~s~kg-R~TiSrD~s~nt~yLqm~sL 86 (254)
T 4f9p_D 13 RPGTSVKVSCKASGYAFTS---YLIHWIKQRPGQGLEWIGVINPRSGDSHYNEKFKD-RTTLTADQSSSTAYMQLSSL 86 (254)
T ss_dssp CTTCCEEEEEEEESSCGGG---CCEEEEEEETTTEEEEEEEEETTTTEEECCTTTTT-TEEEEEETTTTEEEEEECSC
T ss_pred CCCCCeEEEEEEeCCChhh---CcEEEEEeCCCCCeEEEEEEcCCCCCEEECHHhCC-CEEEeeccCCCcCeeEEccC
Confidence 367665 356888742 356788874 2344444443333 67889998888887776544
No 9
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=38.42 E-value=23 Score=28.30 Aligned_cols=32 Identities=28% Similarity=0.355 Sum_probs=24.3
Q ss_pred ecCCCceeEecCCCcceEEEEecCCceeeeecC
Q 010090 458 RFPKEVSIKVPCGLSTQFVLTFSDGSSYPFSTY 490 (518)
Q Consensus 458 Kfs~~~~IkIp~g~~~qfvI~~sdG~e~~Lr~~ 490 (518)
+|+|+. |+|+-|++-.|+++..|+..|.+...
T Consensus 24 ~F~P~~-i~v~~G~tV~~~~~n~d~~~H~~~~~ 55 (100)
T 4hci_A 24 YFNPNV-ITIPINESTTLLLKNKGKSEHTFTIK 55 (100)
T ss_dssp EEESSE-EEECTTSCEEEEEEECSSSCEEEEEG
T ss_pred EEeCCE-EEECCCCEEEEEEEcCCCceEEEEEe
Confidence 577763 78888888888888888777777653
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.15 E-value=88 Score=31.94 Aligned_cols=8 Identities=0% Similarity=-0.051 Sum_probs=2.9
Q ss_pred hhhHHHHh
Q 010090 87 YTLERKVS 94 (518)
Q Consensus 87 ~vLErriA 94 (518)
..+++.+.
T Consensus 526 ~~~~~~~~ 533 (597)
T 3oja_B 526 QARRTEAD 533 (597)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 33333333
No 11
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=35.66 E-value=66 Score=27.83 Aligned_cols=48 Identities=13% Similarity=0.100 Sum_probs=37.5
Q ss_pred hhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhh
Q 010090 58 ARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQN 105 (518)
Q Consensus 58 ~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~A~DqqQq 105 (518)
++..++||..||+.|-...+.=--+.+-|..||+.|+++.--|+.+-.
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~ 78 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALK 78 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 466789999999999887777666788999999999999887765443
No 12
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=34.37 E-value=34 Score=24.93 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhH
Q 010090 62 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSE 95 (518)
Q Consensus 62 eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~ 95 (518)
+|++..|-.|||.|.-|--.|-.+...||.+|..
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999988888888889888753
No 13
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=33.80 E-value=64 Score=30.23 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=13.8
Q ss_pred chhhhHHHHhHHHHHHhHHhhHHHHHHHHHH
Q 010090 85 EKYTLERKVSELRMAIDEKQNEAITSALNEL 115 (518)
Q Consensus 85 EK~vLErriA~mR~A~DqqQqdlvdaAsKaL 115 (518)
||..++..|.+++-+.+....+.+.++.++|
T Consensus 173 ~k~~i~~~l~~~~~~L~~~~~~~i~~~~~~L 203 (219)
T 4e81_A 173 DKTAIESALTALETALKGEDKAAIEAKMQEL 203 (219)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4444444444444444444334444444444
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.03 E-value=10 Score=38.79 Aligned_cols=27 Identities=7% Similarity=0.179 Sum_probs=14.4
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhcccc
Q 010090 165 ISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (518)
Q Consensus 165 Ivs~vKvL~~~Lq~kl~~~e~klke~~ 191 (518)
.....|...+.|+.++..+..++|+..
T Consensus 552 ~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 552 QLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=32.06 E-value=1.3e+02 Score=34.58 Aligned_cols=18 Identities=33% Similarity=0.446 Sum_probs=8.6
Q ss_pred HhhccHHHHHHHHHHHHH
Q 010090 57 RARMQKEEIHSLRQQIAV 74 (518)
Q Consensus 57 ~~r~~eeeI~~Lrk~Lad 74 (518)
++++.++||..|++.+..
T Consensus 985 ~v~~L~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 985 RVLSLQEEIAKLRKELHQ 1002 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555554443
No 16
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=31.90 E-value=25 Score=25.74 Aligned_cols=21 Identities=24% Similarity=0.456 Sum_probs=18.4
Q ss_pred HhhccHHHHHHHHHHHHHHhh
Q 010090 57 RARMQKEEIHSLRQQIAVACL 77 (518)
Q Consensus 57 ~~r~~eeeI~~Lrk~Lad~s~ 77 (518)
-+|.||+-...-|++|+++-.
T Consensus 11 DIr~QE~rV~~aR~rL~eaL~ 31 (36)
T 2l2l_B 11 DIRKQEERVQQVRKKLEEALM 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999854
No 17
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=31.85 E-value=97 Score=35.56 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 010090 62 KEEIHSLRQQIAVA 75 (518)
Q Consensus 62 eeeI~~Lrk~Lad~ 75 (518)
++|+..|+..|...
T Consensus 863 ~~eL~el~~~L~~l 876 (1184)
T 1i84_S 863 DEELQRTKERQQKA 876 (1184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 18
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=31.06 E-value=49 Score=28.77 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=33.0
Q ss_pred hhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhH
Q 010090 58 ARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNE 106 (518)
Q Consensus 58 ~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~A~DqqQqd 106 (518)
++..++||..||+.|-...+.=-.+.+-|..||..|+++.--|+.+-.+
T Consensus 33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~ 81 (131)
T 3tnu_A 33 VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQ 81 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999988877765667788999999999998877765443
No 19
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=30.15 E-value=1.6e+02 Score=25.13 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhhhhh--------hhhcchhhhHHHHhHHHHHH-----hHHhh-HHHHHHHHH-----------HHHh
Q 010090 64 EIHSLRQQIAVACLKEL--------QLQNEKYTLERKVSELRMAI-----DEKQN-EAITSALNE-----------LARR 118 (518)
Q Consensus 64 eI~~Lrk~Lad~s~Ke~--------Qll~EK~vLErriA~mR~A~-----DqqQq-dlvdaAsKa-----------LsyR 118 (518)
++..||++|.+.--+=+ .|++|.-.|=+.||....+- |.... .+++...+. -..=
T Consensus 4 ~L~~lR~~ID~ID~~il~~~~~~~~~Ll~eR~~l~~~Va~~K~~~g~pi~dp~RE~~vl~~~~~~~~~~~l~~~~i~~if 83 (104)
T 2gtv_X 4 KLAEIRKKIDEIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQLGIPINDPEREKYIYDRIRKLCKEHNVDENIGIKIF 83 (104)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHTSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHCCCCCcChHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 47788999888877777 88899999999999888653 43333 233332221 1234
Q ss_pred hhhHhhhhhhhhhhhhhhhh
Q 010090 119 KGVLEENLKLAHDLKVAEDE 138 (518)
Q Consensus 119 q~iiEENiRLtyalq~aeqE 138 (518)
+.||+.++++-+.+-...||
T Consensus 84 ~~ii~~s~~~Q~~~l~~~~~ 103 (104)
T 2gtv_X 84 QRLIEHNKALQKQYLEETLE 103 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcC
Confidence 56777777777766655554
No 20
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=28.37 E-value=4e+02 Score=25.47 Aligned_cols=63 Identities=17% Similarity=0.286 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhhcC--C--CCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCC
Q 010090 140 YFFMSSMLGLLADYG--L--WPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGV 210 (518)
Q Consensus 140 s~fvssLLpLLaEY~--l--qP~v~dAqSIvs~vKvL~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~q~ 210 (518)
.-|+..|||.|--+. | -|.-.+..++..+|+-++++|..=|. ..-|+.+. ..| ..++|+.|+-
T Consensus 109 e~~~~~LLpVlDnlerAl~~~~~~~~~~~l~eGvemi~k~l~~~L~--k~Gv~~I~-~~G-----e~FDP~~HeA 175 (213)
T 4ani_A 109 QSLASDLLPVLDNFERALKIETDNEQAKSILQGMEMVYRSLVDALK--KEGVEAIE-AVG-----KPFDPYLHQA 175 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSCCSTHHHHHHHHHHHHHHHHHHHH--HTTEECCC-CSS-----SCCCTTTEEE
T ss_pred HHHHHHHhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHH--HCCCEEeC-CCC-----CCCCHHHcee
Confidence 468999999987762 2 24445667899999999999988874 33444443 112 2366777753
No 21
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=28.33 E-value=77 Score=25.88 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=24.6
Q ss_pred hhHHHHhH--HHHHHhHHhhHHHHHHHHHHHHhhhhHhh
Q 010090 88 TLERKVSE--LRMAIDEKQNEAITSALNELARRKGVLEE 124 (518)
Q Consensus 88 vLErriA~--mR~A~DqqQqdlvdaAsKaLsyRq~iiEE 124 (518)
.||.||.+ +|+|| |.+.|+.-+.++..-|.-|+.
T Consensus 11 ~le~Ri~~LE~klAf---qE~tIeeLn~~v~~Qq~~Id~ 46 (78)
T 3efg_A 11 ELEARLVELETRLSF---QEQALTELSEALADARLTGAR 46 (78)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 35667764 46776 788888888888877777664
No 22
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=27.74 E-value=1.2e+02 Score=26.46 Aligned_cols=61 Identities=21% Similarity=0.173 Sum_probs=36.4
Q ss_pred HHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhh
Q 010090 56 SRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLK 133 (518)
Q Consensus 56 ~~~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~A~DqqQqdlvdaAsKaLsyRq~iiEENiRLtyalq 133 (518)
.+.-+.||...+|++.+-+-| |-+..++.++|-.|.++.. .--+|.+|-.+|+| ||+.||.
T Consensus 37 D~LEe~eE~~aql~Re~~eK~--------------re~e~~Kr~~~~L~~~~~~-lk~~L~qRD~LI~E--~~~~~~~ 97 (103)
T 4h22_A 37 DMLLELEEQLAESRRQYEEKN--------------KEFEREKHAHSILQFQFAE-VKEALKQREEMLEP--KLAAALE 97 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH-HHHHHHTTTSCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHH
Confidence 455677788888887776654 2255667777776666543 45589999999998 5666653
No 23
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=27.71 E-value=3.7e+02 Score=24.87 Aligned_cols=127 Identities=13% Similarity=0.115 Sum_probs=73.7
Q ss_pred hhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcch----hhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhh
Q 010090 50 EAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEK----YTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEEN 125 (518)
Q Consensus 50 ~~~~l~~~~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK----~vLErriA~mR~A~DqqQqdlvdaAsKaLsyRq~iiEEN 125 (518)
+++.++.|-+.-+.||...+..+....-.-.+|+.++ -.+.+|+..|+-.|+ .|.+. ..-|+..||+.
T Consensus 38 ~~~~ll~kh~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~l~~~w~----~L~~~----~~~R~~~Le~~ 109 (326)
T 3kbt_A 38 GAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGEQIIRLQGQVDKHYA----GLKDV----AEERKRKLENM 109 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHH----HHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH----HHHHH----HHHHHHHHHHH
Confidence 4567777777788888777766655443333344433 356777777766554 33333 34588999999
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhh-hhhhcc
Q 010090 126 LKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTS-YDRIRD 189 (518)
Q Consensus 126 iRLtyalq~aeqERs~fvssLLpLLaEY~lqP~v~dAqSIvs~vKvL~~~Lq~kl~~~-e~klke 189 (518)
++| |.+...=++--..+..-...|+.-+ +.+--.-|..+..-|+.++..+..+ +.++..
T Consensus 110 l~l-~~f~~~~~~l~~Wl~~~e~~l~~~~----~g~d~~~v~~l~~~~~~f~~el~~~~~~~v~~ 169 (326)
T 3kbt_A 110 YHL-FQLKRETDDLEQWISEKELVASSPE----MGQDFDHVTLLRDKFRDFARETGAIGQERVDN 169 (326)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHCCC----CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHcccc----CCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 887 5544444455566666666665322 2222233344444567777776652 444443
No 24
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=27.17 E-value=62 Score=26.53 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=35.1
Q ss_pred CCcceEEEEecCCceeeeecCCCCCchhhHHHHHHHHhhhh
Q 010090 470 GLSTQFVLTFSDGSSYPFSTYNVRMRDTLVLTMRMLQGKAL 510 (518)
Q Consensus 470 g~~~qfvI~~sdG~e~~Lr~~n~~~RD~iVLTlR~F~~~Al 510 (518)
+...-|.|+..+|..+.|.+.+...||.=|-.|+.-+..+|
T Consensus 87 ~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i~~~l 127 (128)
T 2rlo_A 87 EENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILASL 127 (128)
T ss_dssp CCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHc
Confidence 35567999999889999999999999999998888777665
No 25
>3dde_A TENA/THI-4 protein, domain of unknown function WI oxygenase-like fold; structural genomics, joint center for structural genomics; HET: MSE PGE; 2.30A {Shewanella denitrificans OS217}
Probab=26.46 E-value=57 Score=30.00 Aligned_cols=52 Identities=17% Similarity=0.297 Sum_probs=38.7
Q ss_pred HhHHHHHHh------HHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHHHHH
Q 010090 93 VSELRMAID------EKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMS 144 (518)
Q Consensus 93 iA~mR~A~D------qqQqdlvdaAsKaLsyRq~iiEENiRLtyalq~aeqERs~fvs 144 (518)
+..+|-..| ++|+.+|++|-.+...-.+++++=.+--..++..+-+|+.|+-
T Consensus 179 ~~~~~~~ld~~~~~~~~~~~ii~~a~~~~~l~~~~f~~l~~~~~~~~~~~~~~~~~~~ 236 (239)
T 3dde_A 179 AEEVNEMLHEVCKTQEDVDSVVAVMENSLVLTARILDDVWKEYQLFQSGASDRYAFLR 236 (239)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSSCCCC--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHh
Confidence 344555554 5689999999999999999988866554444999999999873
No 26
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=25.31 E-value=1.1e+02 Score=29.42 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=41.4
Q ss_pred cccccceEEEEeecceEEEeCCCcceeeeecCCCceeEecCC------CcceEEEEecCC
Q 010090 429 SENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCG------LSTQFVLTFSDG 482 (518)
Q Consensus 429 ~d~wE~atL~IrRegY~IK~~~~~~~I~EKfs~~~~IkIp~g------~~~qfvI~~sdG 482 (518)
.+.|+ ..|-|-=-||.+...+..+.|.==||-.+.+.||.| .+++++|.+.|-
T Consensus 107 t~Gf~-kkLelvGvGYra~~~G~~L~L~LG~SHpv~~~iP~GI~v~v~~~t~Iiv~GiDK 165 (212)
T 1nkw_E 107 SDGYT-INLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDK 165 (212)
T ss_pred ccCeE-EEEEEeeeeeEEEcCCCEEEEEccCCccEEEECCCCeEEEeCCCCEEEEEeCCH
Confidence 56777 788899999999988777888777898899999977 335666666664
No 27
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Probab=25.21 E-value=52 Score=30.20 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=37.8
Q ss_pred hhhhhhhhHHHHHHHHHHhhhc-CCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccc
Q 010090 132 LKVAEDERYFFMSSMLGLLADY-GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (518)
Q Consensus 132 lq~aeqERs~fvssLLpLLaEY-~lqP~v~dAqSIvs~vKvL~~~Lq~kl~~~e~klke~~ 191 (518)
++.||++.+.-++.|+-+...| +|... .-|.+||.+|..+|.+|.-..
T Consensus 75 ~~~ae~~Ls~aL~~L~av~E~YP~LKan------------~~f~~Lq~eL~~~EnrIa~AR 123 (171)
T 2etd_A 75 SAQADAELSSALSRLLAIAENYPNLXAD------------ANFRQLMDELAGTENRIAVAR 123 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHC------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccccC------------hHHHHHHHHHHHHHHHHHHHH
Confidence 4678899988888888877777 55443 358999999999999986655
No 28
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=25.18 E-value=77 Score=28.65 Aligned_cols=33 Identities=30% Similarity=0.327 Sum_probs=24.1
Q ss_pred ccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHh
Q 010090 60 MQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVS 94 (518)
Q Consensus 60 ~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA 94 (518)
|-++||..|+.+-..| .+.-+.||--|+||||+
T Consensus 36 EL~~EI~~L~EKaRKA--Eq~Gi~NE~aV~erKi~ 68 (128)
T 1sf9_A 36 ELNTEIALLSEKARKA--EQHGIINELAVLERKIT 68 (128)
T ss_dssp HHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHcCCccHHHHHHHHHH
Confidence 3456677776665544 45679999999999985
No 29
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=24.82 E-value=5.7e+02 Score=27.76 Aligned_cols=117 Identities=16% Similarity=0.154 Sum_probs=71.3
Q ss_pred CCCccccchhhhhHHHHhhccHHHHH--HHHHHHHHHhhh-hhhhhcchhhhHHHHhHHHHHHhH---HhhHHHHHHHHH
Q 010090 41 DNFISFQDREAMELYSRARMQKEEIH--SLRQQIAVACLK-ELQLQNEKYTLERKVSELRMAIDE---KQNEAITSALNE 114 (518)
Q Consensus 41 ~~~~~~~d~~~~~l~~~~r~~eeeI~--~Lrk~Lad~s~K-e~Qll~EK~vLErriA~mR~A~Dq---qQqdlvdaAsKa 114 (518)
+...-=-+|-++.++.|+++-|+|.. .+|-+..+.-.+ ...-|.+-| +++.----.|+ .|-+.++.|.|+
T Consensus 82 ~~~pDPLsPgE~~~~~Kl~eLE~e~k~d~~~~khn~~I~~k~g~~l~~v~----~~~~~~~~~e~~e~~q~~~LekAl~s 157 (526)
T 3iyk_A 82 EEIPDPLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVY----NFMNGEANAEIEDEKQFDILNKAVTS 157 (526)
T ss_pred CCCCCCCCHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 33333457889999999999888875 444444433332 222222222 22221122222 477888888887
Q ss_pred HHHhhhhHhhhh---hhhhhhhhhhhhhHHHHHHHHHHhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHh
Q 010090 115 LARRKGVLEENL---KLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRT 182 (518)
Q Consensus 115 LsyRq~iiEENi---RLtyalq~aeqERs~fvssLLpLLaEY~lqP~v~dAqSIvs~vKvL~~~Lq~kl~~ 182 (518)
+. +=+-+||- +|+-|||....+||. |=..+|+..+.-|+.|++-+..
T Consensus 158 ~~--~i~~~e~~~l~~L~~AL~kE~~~Rt~-------------------dE~~mi~~yr~k~~aL~~aIe~ 207 (526)
T 3iyk_A 158 YN--KILTEEDLQMRRLATALQKEIGERTH-------------------AETVMVKEYRDKIDALKNAIEV 207 (526)
T ss_pred HH--HHHHHHHhHHHHHHHHHHHHHHhhcH-------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 54 44445554 578899999999973 5667777777777777766543
No 30
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=24.38 E-value=2e+02 Score=26.12 Aligned_cols=110 Identities=15% Similarity=0.176 Sum_probs=54.0
Q ss_pred CCChhhhhhcccccccccccccCCCCccccchhhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHH
Q 010090 18 AKNSDFVNRHKIETHLAPTKQKEDNFISFQDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELR 97 (518)
Q Consensus 18 ~~~s~~~~r~~~~~~l~~~~~~~~~~~~~~d~~~~~l~~~~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR 97 (518)
+++||+.+|.+|.. |-+..+...-...+.|++.-+- -.++|..--..|++|.=.=.+=+.+. +++..|=
T Consensus 37 sassDa~vrq~Ia~-LP~eVsd~s~l~klkDk~~~e~------l~~~veeA~~~L~eYn~rL~~E~~dR----~~L~~~L 105 (152)
T 4fla_A 37 AASGDATVRQKIAS-LPQEVQDVSLLEKITDKEAAER------LSKTVDEACLLLAEYNGRLAAELEDR----RQLARML 105 (152)
T ss_dssp HHHHHHHHHHHHHT-SCGGGTCGGGGGGCCSHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred cccchHHHHHHHHc-CCccccCHHHHHHcccHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 56888999988665 3333333333344444442221 12344444455555543311112222 2344555
Q ss_pred HHHhHHhhHHHHHHHHHH-HHhhhhHhhhhhhhhhhhhhhhhhHHHHHHH
Q 010090 98 MAIDEKQNEAITSALNEL-ARRKGVLEENLKLAHDLKVAEDERYFFMSSM 146 (518)
Q Consensus 98 ~A~DqqQqdlvdaAsKaL-syRq~iiEENiRLtyalq~aeqERs~fvssL 146 (518)
..|.+.|++.+..|=+-| .||+- .--++....|.---|+||
T Consensus 106 ~~~~~~~~~~l~e~e~~leeyK~K--------l~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 106 VEYTQNQKDVLSEKEKKLEEYKQK--------LARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhcC
Confidence 577777777776666555 44443 223444445555555554
No 31
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=23.98 E-value=80 Score=28.39 Aligned_cols=36 Identities=44% Similarity=0.523 Sum_probs=25.6
Q ss_pred HHHHHHH-------HHHHHHHhhh-----hhhhhcchhhhHHHHhHHH
Q 010090 62 KEEIHSL-------RQQIAVACLK-----ELQLQNEKYTLERKVSELR 97 (518)
Q Consensus 62 eeeI~~L-------rk~Lad~s~K-----e~Qll~EK~vLErriA~mR 97 (518)
+.||.+| |.+||.+... =+|+..|+..|+++|+.|+
T Consensus 9 K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLR 56 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566655 4455554432 3688999999999999998
No 32
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=22.10 E-value=4.6e+02 Score=27.79 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=13.9
Q ss_pred cHHHHHHHHHHHHHHhhhh
Q 010090 61 QKEEIHSLRQQIAVACLKE 79 (518)
Q Consensus 61 ~eeeI~~Lrk~Lad~s~Ke 79 (518)
-+..|.+|+..|...+-+.
T Consensus 98 V~~~LqeLe~~l~~lsn~T 116 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTS 116 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhhh
Confidence 4567889999988876543
No 33
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=21.58 E-value=2.2e+02 Score=22.88 Aligned_cols=31 Identities=19% Similarity=0.053 Sum_probs=24.8
Q ss_pred cCCCceeEecCCCcceEEEEecCCceeeeecC
Q 010090 459 FPKEVSIKVPCGLSTQFVLTFSDGSSYPFSTY 490 (518)
Q Consensus 459 fs~~~~IkIp~g~~~qfvI~~sdG~e~~Lr~~ 490 (518)
|+| ..|+||.|++..|.++..|+.-|.+...
T Consensus 35 f~p-~~i~v~~G~~V~~~~~n~d~~~H~~~i~ 65 (112)
T 1iby_A 35 NEP-ETLVVKKGDAVKVVVENKSPISEGFSID 65 (112)
T ss_dssp EES-CEEEEETTCEEEEEEEECSSSCEEEEEG
T ss_pred EcC-CEEEEeCCCEEEEEEEECCCCeEEEEEc
Confidence 555 4588999999999999988777877654
No 34
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=21.35 E-value=1.9e+02 Score=25.69 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=22.3
Q ss_pred HhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHH
Q 010090 57 RARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELR 97 (518)
Q Consensus 57 ~~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR 97 (518)
.+.+.++||..|+..|..+.+|--.+..|...|.+++..|+
T Consensus 83 ~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666665555555555555544443
No 35
>2cx7_A Sterol carrier protein 2; sterol transfer, SCP-2, RSGI, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} PDB: 1wfr_A
Probab=20.74 E-value=48 Score=28.55 Aligned_cols=50 Identities=18% Similarity=0.241 Sum_probs=31.7
Q ss_pred CCCcccceeecccCCCcceeeeccccCCceeeeeEEEEEccCCceeeecCC--CC-Cceeeecccc
Q 010090 306 GPGIEGFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGA--TN-PEYVVTADDV 368 (518)
Q Consensus 306 lPgiegl~I~Gda~pG~~L~acG~~inGTtlC~FQWvRhleDGt~~~IeGA--~~-p~Y~vTADDV 368 (518)
+-|+-.+.|+|++ .||++- .-.|.=.|++|.+.+.+.. .. |+|++|+++-
T Consensus 29 ~~~~~~~~i~~~p-------~~g~~~------~~~~~l~l~~G~~~~~~~~~~~~~~d~tl~~~~e 81 (130)
T 2cx7_A 29 WEGSLALAVRPDP-------KAGFPK------GVAVVLDLWHGACRGAKAVEGEAEADFVIEADLA 81 (130)
T ss_dssp CEEEEEEEECCBG-------GGTBTT------CEEEEEEEETTEEEEEEEEESCCCCSEEEEECHH
T ss_pred CcceEEEEEecCc-------ccCCCC------CceEEEEEeCCEEEEccccCCCCCCCEEEEEcHH
Confidence 3456677888775 224431 1248888899988655522 23 8888888763
No 36
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=20.57 E-value=5e+02 Score=23.85 Aligned_cols=126 Identities=10% Similarity=0.143 Sum_probs=68.6
Q ss_pred hhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchh----hhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhh
Q 010090 50 EAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKY----TLERKVSELRMAIDEKQNEAITSALNELARRKGVLEEN 125 (518)
Q Consensus 50 ~~~~l~~~~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~----vLErriA~mR~A~DqqQqdlvdaAsKaLsyRq~iiEEN 125 (518)
+.+.|..+-+.-+.+|.....++....-.-.+|..+.+ .++.++..|.-.|+. |.+. +..|+..||+.
T Consensus 37 ~v~~ll~kh~~le~~i~~~~~~v~~l~~~a~~l~~~~~~~~~~i~~~~~~l~~~w~~----L~~~----~~~R~~~Le~~ 108 (322)
T 1u4q_A 37 SVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQR----IKSM----AAARRAKLNES 108 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCSSCTHHHHHHHHHHHHHHHH----HHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH----HHHH----HHHHHHHHHHH
Confidence 34555666666677777776666555444444554433 344555554444433 3332 45788999998
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhc
Q 010090 126 LKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIR 188 (518)
Q Consensus 126 iRLtyalq~aeqERs~fvssLLpLLaEY~lqP~v~dAqSIvs~vKvL~~~Lq~kl~~~e~klk 188 (518)
.+|. .....-+|-...+....++|+.-++- .|..++ .++..-++.|+.+|...+..+.
T Consensus 109 ~~l~-~f~~~~~~~~~Wl~e~e~~~~~~~~g---~dl~~v-~~ll~~h~~l~~el~~~~~~i~ 166 (322)
T 1u4q_A 109 HRLH-QFFRDMDDEESWIKEKKLLVSSEDYG---RDLTGV-QNLRKKHKRLEAELAAHEPAIQ 166 (322)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHTCCCCC---SSHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHhccCCCcC---CCHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 8853 33333345566677778888764442 233222 2222335556666654444443
Done!