Your job contains 1 sequence.
>010092
MGVVTISSSPARSPIGLSTISHRSTSKRPLIVAFKADKSNNQALFSPQEQIPLPIETPKR
HQKRRENSRKRLERVKGVFSDEASPCTLDVDYNEAAAKLENIYKLSPAVTTSEVKYADGV
VKRGRQRRKRIGEVEKKSDDVSGKPVVRNQVKRPKRLSLDKRIELRKNEDEKVVTKTRKT
DSKDEHEKIEKLVREYSYSTDLVSLDWKKMKIPPVLSSTEHTWLFKLMQPMKVFVQVKEQ
LQKDLGREPTDVELAEATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFAN
GPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLES
TSIMQVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGV
TQEEFINGITDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLG
EIAGNLNISREMVRKHEVKGLMKLKHPTRVDYLRQHMV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010092
(518 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2167413 - symbol:SIGE "AT5G24120" species:3702... 1599 2.7e-164 1
UNIPROTKB|Q84JN3 - symbol:SIG5 "Os05g0586600 protein" spe... 1109 2.2e-112 1
UNIPROTKB|Q9KUK1 - symbol:VC_0517 "RNA polymerase sigma f... 359 1.7e-31 1
TIGR_CMR|VC_0517 - symbol:VC_0517 "RNA polymerase sigma f... 359 1.7e-31 1
TIGR_CMR|SPO_1750 - symbol:SPO_1750 "RNA polymerase sigma... 349 2.4e-31 2
TIGR_CMR|APH_0576 - symbol:APH_0576 "RNA polymerase sigma... 357 4.2e-31 1
TIGR_CMR|GSU_3089 - symbol:GSU_3089 "RNA polymerase sigma... 349 4.5e-30 1
TIGR_CMR|ECH_0760 - symbol:ECH_0760 "RNA polymerase sigma... 348 9.3e-30 1
TIGR_CMR|CBU_1596 - symbol:CBU_1596 "RNA polymerase sigma... 336 1.5e-28 2
TIGR_CMR|BA_4515 - symbol:BA_4515 "RNA polymerase sigma-4... 319 2.1e-28 1
TAIR|locus:2057996 - symbol:SIGF "AT2G36990" species:3702... 335 2.5e-28 1
TIGR_CMR|CHY_0455 - symbol:CHY_0455 "RNA polymerase sigma... 318 2.7e-28 1
UNIPROTKB|P00579 - symbol:rpoD species:83333 "Escherichia... 334 5.7e-28 1
TAIR|locus:2025650 - symbol:SIG2 "AT1G08540" species:3702... 324 7.2e-27 1
TIGR_CMR|CPS_4334 - symbol:CPS_4334 "RNA polymerase sigma... 324 9.6e-27 1
UNIPROTKB|P0A602 - symbol:rpoD "RNA polymerase sigma fact... 318 2.6e-26 1
TIGR_CMR|SO_1284 - symbol:SO_1284 "RNA polymerase sigma-7... 320 2.9e-26 1
TIGR_CMR|CJE_1081 - symbol:CJE_1081 "RNA polymerase sigma... 318 5.1e-26 1
TIGR_CMR|DET_0551 - symbol:DET_0551 "RNA polymerase sigma... 304 9.2e-26 2
UNIPROTKB|Q59563 - symbol:mysB "RNA polymerase sigma fact... 286 1.1e-24 1
UNIPROTKB|Q84LK8 - symbol:SIG6 "Sig6" species:39947 "Oryz... 297 1.1e-23 1
TIGR_CMR|SO_3432 - symbol:SO_3432 "RNA polymerase sigma f... 266 1.9e-22 1
TIGR_CMR|VC_0534 - symbol:VC_0534 "RNA polymerase sigma f... 249 2.7e-22 2
TAIR|locus:2010871 - symbol:SIGA "AT1G64860" species:3702... 272 5.5e-21 1
TIGR_CMR|GSU_1525 - symbol:GSU_1525 "RNA polymerase sigma... 247 2.3e-20 1
UNIPROTKB|P13445 - symbol:rpoS "RNA polymerase, sigma S (... 233 1.8e-18 2
UNIPROTKB|O48655 - symbol:rsigA "Plastid RNA polymerase s... 249 2.6e-18 1
TIGR_CMR|CPS_1079 - symbol:CPS_1079 "RNA polymerase sigma... 228 2.8e-18 1
TIGR_CMR|NSE_0312 - symbol:NSE_0312 "RNA polymerase sigma... 228 8.8e-18 2
TAIR|locus:2173249 - symbol:SIG4 "AT5G13730" species:3702... 234 6.2e-17 1
TAIR|locus:2084420 - symbol:SIGC "AT3G53920" species:3702... 222 5.5e-16 2
TIGR_CMR|CBU_1669 - symbol:CBU_1669 "RNA polymerase sigma... 221 8.5e-16 1
TIGR_CMR|CHY_1959 - symbol:CHY_1959 "RNA polymerase sigma... 195 1.1e-14 1
UNIPROTKB|O32728 - symbol:O32728 "RNA polymerase sigma fa... 173 4.0e-11 1
TIGR_CMR|BA_4294 - symbol:BA_4294 "RNA polymerase sigma-F... 170 1.2e-10 1
TIGR_CMR|CHY_0617 - symbol:CHY_0617 "RNA polymerase sigma... 122 1.2e-09 2
TIGR_CMR|CHY_2055 - symbol:CHY_2055 "RNA polymerase sigma... 154 1.4e-08 1
TIGR_CMR|BA_4043 - symbol:BA_4043 "RNA polymerase sigma-2... 123 1.5e-07 2
TIGR_CMR|SPO_0406 - symbol:SPO_0406 "RNA polymerase sigma... 147 1.6e-07 1
TIGR_CMR|BA_4042 - symbol:BA_4042 "RNA polymerase sigma-G... 142 3.9e-07 1
TIGR_CMR|GSU_0655 - symbol:GSU_0655 "RNA polymerase sigma... 141 7.0e-07 1
UNIPROTKB|O83707 - symbol:TP_0709 "RNA polymerase sigma f... 140 7.0e-07 1
TIGR_CMR|SPO_1409 - symbol:SPO_1409 "RNA polymerase sigma... 140 1.1e-06 1
TIGR_CMR|BA_4566 - symbol:BA_4566 "RNA polymerase sigma-2... 133 3.1e-06 1
TIGR_CMR|ECH_0655 - symbol:ECH_0655 "RNA polymerase sigma... 130 1.4e-05 1
TIGR_CMR|CHY_2056 - symbol:CHY_2056 "RNA polymerase sigma... 126 2.2e-05 2
TIGR_CMR|SO_4583 - symbol:SO_4583 "RNA polymerase sigma-3... 127 2.8e-05 1
TIGR_CMR|GSU_3053 - symbol:GSU_3053 "RNA polymerase sigma... 121 9.3e-05 1
UNIPROTKB|P0AGB3 - symbol:rpoH species:83333 "Escherichia... 119 0.00022 1
TIGR_CMR|NSE_0341 - symbol:NSE_0341 "RNA polymerase sigma... 116 0.00049 1
>TAIR|locus:2167413 [details] [associations]
symbol:SIGE "AT5G24120" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=ISS;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] [GO:0071483 "cellular response to blue light"
evidence=IEP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0001053 "plastid sigma factor
activity" evidence=IMP] [GO:0010207 "photosystem II assembly"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0010114 "response to red light" evidence=IEP]
[GO:0010218 "response to far red light" evidence=IEP] [GO:0009637
"response to blue light" evidence=IGI] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0010264
"myo-inositol hexakisphosphate biosynthetic process" evidence=RCA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0005739 EMBL:CP002688 GO:GO:0009507
GO:GO:0045893 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010218 GO:GO:0010114
GO:GO:0009658 EMBL:AB010696 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0010207 eggNOG:COG0568 HSSP:Q9EZJ8
GO:GO:0001053 KO:K03093 EMBL:AB021120 EMBL:Y18550 EMBL:AK316888
EMBL:AY045660 EMBL:AK221445 IPI:IPI00519217 PIR:T51328
RefSeq:NP_197800.1 UniGene:At.5425 ProteinModelPortal:Q9ZNX9
SMR:Q9ZNX9 STRING:Q9ZNX9 PRIDE:Q9ZNX9 EnsemblPlants:AT5G24120.1
GeneID:832477 KEGG:ath:AT5G24120 GeneFarm:28 TAIR:At5g24120
InParanoid:Q9ZNX9 OMA:NKLIKHN PhylomeDB:Q9ZNX9
ProtClustDB:CLSN2686315 Genevestigator:Q9ZNX9 GO:GO:0071483
Uniprot:Q9ZNX9
Length = 517
Score = 1599 (567.9 bits), Expect = 2.7e-164, P = 2.7e-164
Identities = 335/528 (63%), Positives = 399/528 (75%)
Query: 1 MGVVTISSSPARSPIGLST--ISHRSTSKRPLIVAFKADKSNNQALF-SPQEQIPLPIET 57
MGVV+ISSS ARSP+GL ++HRS+ K+P IVAFKAD S+N AL P+EQ+ +P E
Sbjct: 1 MGVVSISSSAARSPLGLGNDLLTHRSSLKKPSIVAFKADDSSNSALIIPPREQVLIPAE- 59
Query: 58 PKRHQKRRENSRKR-LERVKGVFSDE---ASPCTLDVDYNEAAAKLENIYKLSPAVTTSE 113
K ++K+RE +R++ + K S E A C+L VDYNEAAA+LE+IYKLSPA TT
Sbjct: 60 -KHNEKKREVTRRKPCKTPKKPLSLEHNSAPSCSLGVDYNEAAARLESIYKLSPATTTL- 117
Query: 114 VKYADXXXXXXXXXXXXIGEVEKKSDDVSGKPVVRNQVKRPKRLSLDKRIELRKNEDEK- 172
D K+S + K VVRN VK+ KR+SLDKRI L++N EK
Sbjct: 118 --VEDDVEDGGSKAKVSRRRKRKESGEEK-KVVVRNNVKKEKRMSLDKRIALKRNVQEKP 174
Query: 173 VVTKTRK--TDSKDEHEKIEKLVREYSYSTDLVSLDWKKMKIPPVLSSTEHTWLFKLMQP 230
VV K T + E EKIE+LVR+YS S D+VSLDWKKMKIPPVLSSTEH WLFKLMQP
Sbjct: 175 VVASVDKKVTKRQQEEEKIERLVRDYSASNDIVSLDWKKMKIPPVLSSTEHAWLFKLMQP 234
Query: 231 MKVFVQVKEQLQKDLGREPTDVELAEATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFV 290
MK ++VK+ LQK LGREP + E+A NM+A +VKK +E+GRAARNKLIKHNLRLVLFV
Sbjct: 235 MKALLEVKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGRAARNKLIKHNLRLVLFV 294
Query: 291 IKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSS 350
+ KYF +F NGP+FQDLCQAG++GLITAIDRFEPKR+FRLSTYGLFWIRHAIIRSMT S+
Sbjct: 295 MNKYFHEFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSN 354
Query: 351 FTRVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKP 410
FTRVPFGLES VR EI +AK EL FE+ R PT++E+++ + I+PERYREV++A+KP
Sbjct: 355 FTRVPFGLES-----VRVEIYKAKTELWFEMGRPPTEDEVVERLKITPERYREVLRAAKP 409
Query: 411 ILSLHSRHGVTQEEFINGITDVDGVENENQRQPAXXXXXXXXXXXXXKPKESLVIRQRFG 470
+LSL+S+H VTQEEFINGITDVDGV N RQPA KPKESLVIRQR+G
Sbjct: 410 VLSLNSKHSVTQEEFINGITDVDGVGANNSRQPALLRLALDDVLDSLKPKESLVIRQRYG 469
Query: 471 LDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYLRQHMV 518
LDGKGDRTLGEIAGNLNISREMVRKHEVK LMKLKH RVDYLRQ++V
Sbjct: 470 LDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHQARVDYLRQYIV 517
>UNIPROTKB|Q84JN3 [details] [associations]
symbol:SIG5 "Os05g0586600 protein" species:39947 "Oryza
sativa Japonica Group" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IDA] [GO:0009536 "plastid" evidence=IDA]
[GO:0016987 "sigma factor activity" evidence=IDA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0009536 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 EMBL:AP008211 GO:GO:0016987
GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HSSP:Q9EZJ8 KO:K03093 OMA:NKLIKHN ProtClustDB:CLSN2686315
EMBL:AB096011 EMBL:AB096071 RefSeq:NP_001056463.1 UniGene:Os.57417
EnsemblPlants:LOC_Os05g50930.1 GeneID:4339759 KEGG:osa:4339759
Uniprot:Q84JN3
Length = 500
Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
Identities = 230/429 (53%), Positives = 298/429 (69%)
Query: 91 DYNEAAAKLENIYKLSPAVTTSEVKYADXXXXXXXXXXXXI-GEVEKKSDDVSGKPVVRN 149
DYNE AA LE+IYKLSPAV E K AD G V + + R
Sbjct: 82 DYNEVAAALESIYKLSPAVV--EEKDADEEDEKSKQTKRKRKGRVGRSRNATVTVRSSRR 139
Query: 150 QVKRPKRLSLDKRIELRKNEDEKVVTKTRKTDSKDEHEKIEK-LVREYSYSTDLVSLDWK 208
+ +R +R+ L KR+E+R+ E+E+ K + DE E+ L+RE++ STD+ SLDWK
Sbjct: 140 R-RRGQRMDLGKRVEMRRREEEEGGGGAGKVE--DEERGFEEMLLREHAVSTDMGSLDWK 196
Query: 209 KMKIPPVLSSTEHTWLFKLMQPMKVFVQVKEQLQKDLGREPTDVELAEATNMSAAQVKKC 268
+MKIPPVL+S + LF++MQPMK +++KE L+ ++ EP D +LAEA NMS Q+++
Sbjct: 197 RMKIPPVLTSAQSIRLFRIMQPMKAIMEMKENLENEVQSEPNDAQLAEAMNMSVLQMRRH 256
Query: 269 LEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRF 328
LEVGRAARNKLIKHNLRLVL+ I KY+ D +N RF D+CQAG GLITAIDRFEPKR F
Sbjct: 257 LEVGRAARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGANGLITAIDRFEPKRGF 316
Query: 329 RLSTYGLFWIRHAIIRSMTVSSFTRVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDE 388
R+STY LFWIRH+I+R++T+S+FTR PF +ES R EI RA+ EL FEL R PT+E
Sbjct: 317 RISTYALFWIRHSIVRAITLSNFTRFPFAMESE-----RQEIHRAREELAFELGRAPTEE 371
Query: 389 EIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENENQRQPAXXXX 448
E+++ V +SP RYR+V++ ++P SLH+R+ VTQEE IN +TD D + +
Sbjct: 372 EVMKKVGLSPARYRDVVRMTRPTYSLHARNRVTQEELINEVTDDDAIGVDTSSHNTLLRL 431
Query: 449 XXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPT 508
KPKES+VIRQRFGLDG+G RTL EIAGNLNISREMVRK+E+K LMKLKHPT
Sbjct: 432 AIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALMKLKHPT 491
Query: 509 RVDYLRQHM 517
RV+YLR++M
Sbjct: 492 RVEYLRRYM 500
>UNIPROTKB|Q9KUK1 [details] [associations]
symbol:VC_0517 "RNA polymerase sigma factor" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 KO:K03086
OMA:IEMNTDH TIGRFAMs:TIGR02393 ProtClustDB:PRK05658 PIR:F82312
RefSeq:NP_230168.1 ProteinModelPortal:Q9KUK1 SMR:Q9KUK1
DNASU:2615810 GeneID:2615810 KEGG:vch:VC0517 PATRIC:20080131
Uniprot:Q9KUK1
Length = 625
Score = 359 (131.4 bits), Expect = 1.7e-31, P = 1.7e-31
Identities = 90/312 (28%), Positives = 168/312 (53%)
Query: 217 SSTEHTWLFKLMQPMKVFV-QVKEQLQKDLGREPTDVELAEA-TNMSAAQVK---KCLEV 271
+ + WL K++ K +V +V+EQ ++++ R +++ E T++S ++K + + +
Sbjct: 321 NESNEEWLDKVLASDKPYVAKVREQ-EEEIRRSIQKLQMIEQETSLSVERIKDISRRMSI 379
Query: 272 GRA----ARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRR 327
G A A+ ++++ NLRLV+ + KKY G +F DL Q G GL+ A+D+FE +R
Sbjct: 380 GEAKARRAKKEMVEANLRLVISIAKKYTN---RGLQFLDLIQEGNIGLMKAVDKFEYRRG 436
Query: 328 FRLSTYGLFWIRHAIIRSMTVSSFT-RVPFGLESTSIMQVRGEIQRAKLELLFELKRVPT 386
++ STY +WIR AI RS+ + T R+P +++ ++ R ++L E+ R P
Sbjct: 437 YKFSTYATWWIRQAITRSIADQARTIRIP-----VHMIETINKLNRISRQMLQEMGREPL 491
Query: 387 DEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENENQRQPAXX 446
EE+ + + + ++ R+V+K +K +S+ + G ++ + + +E A
Sbjct: 492 PEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATS 551
Query: 447 XXXXXXXXXXX-KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 505
P+E+ V+R RFG+D D TL E+ +++RE +R+ E K L KL+
Sbjct: 552 LKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 611
Query: 506 HPTRVDYLRQHM 517
HP+R + LR +
Sbjct: 612 HPSRSEVLRSFL 623
>TIGR_CMR|VC_0517 [details] [associations]
symbol:VC_0517 "RNA polymerase sigma factor RpoD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 KO:K03086
OMA:IEMNTDH TIGRFAMs:TIGR02393 ProtClustDB:PRK05658 PIR:F82312
RefSeq:NP_230168.1 ProteinModelPortal:Q9KUK1 SMR:Q9KUK1
DNASU:2615810 GeneID:2615810 KEGG:vch:VC0517 PATRIC:20080131
Uniprot:Q9KUK1
Length = 625
Score = 359 (131.4 bits), Expect = 1.7e-31, P = 1.7e-31
Identities = 90/312 (28%), Positives = 168/312 (53%)
Query: 217 SSTEHTWLFKLMQPMKVFV-QVKEQLQKDLGREPTDVELAEA-TNMSAAQVK---KCLEV 271
+ + WL K++ K +V +V+EQ ++++ R +++ E T++S ++K + + +
Sbjct: 321 NESNEEWLDKVLASDKPYVAKVREQ-EEEIRRSIQKLQMIEQETSLSVERIKDISRRMSI 379
Query: 272 GRA----ARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRR 327
G A A+ ++++ NLRLV+ + KKY G +F DL Q G GL+ A+D+FE +R
Sbjct: 380 GEAKARRAKKEMVEANLRLVISIAKKYTN---RGLQFLDLIQEGNIGLMKAVDKFEYRRG 436
Query: 328 FRLSTYGLFWIRHAIIRSMTVSSFT-RVPFGLESTSIMQVRGEIQRAKLELLFELKRVPT 386
++ STY +WIR AI RS+ + T R+P +++ ++ R ++L E+ R P
Sbjct: 437 YKFSTYATWWIRQAITRSIADQARTIRIP-----VHMIETINKLNRISRQMLQEMGREPL 491
Query: 387 DEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENENQRQPAXX 446
EE+ + + + ++ R+V+K +K +S+ + G ++ + + +E A
Sbjct: 492 PEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATS 551
Query: 447 XXXXXXXXXXX-KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 505
P+E+ V+R RFG+D D TL E+ +++RE +R+ E K L KL+
Sbjct: 552 LKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 611
Query: 506 HPTRVDYLRQHM 517
HP+R + LR +
Sbjct: 612 HPSRSEVLRSFL 623
>TIGR_CMR|SPO_1750 [details] [associations]
symbol:SPO_1750 "RNA polymerase sigma-70 factor RpoD"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007127
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR007631 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
Pfam:PF04546 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
ProtClustDB:PRK05658 RefSeq:YP_166988.1 ProteinModelPortal:Q5LSL7
SMR:Q5LSL7 GeneID:3193502 KEGG:sil:SPO1750 PATRIC:23376823
OMA:YQGSELD Uniprot:Q5LSL7
Length = 660
Score = 349 (127.9 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
Identities = 91/289 (31%), Positives = 156/289 (53%)
Query: 239 EQLQKDLGR--EPTDVELAEATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQ 296
E+L+ D+ + + ++++E + QV+K + R A+ ++++ NLRLV+ + KKY
Sbjct: 385 EELRADMAQVGQYVGLDISEFRRI-VQQVQKGEKEARQAKKEMVEANLRLVISIAKKYTN 443
Query: 297 DFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFT-RVP 355
G +F DL Q G GL+ A+D+FE +R ++ STY +WIR AI RS+ + T R+P
Sbjct: 444 ---RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIP 500
Query: 356 FGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLH 415
+++ ++ R ++L E+ R PT EE+ + + + E+ R+VMK +K +SL
Sbjct: 501 -----VHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLE 555
Query: 416 SRHGVTQE----EFI---NGITDVDGVENENQRQPAXXXXXXXXXXXXXKPKESLVIRQR 468
+ G ++ +FI N + +D EN ++ P+E V+R R
Sbjct: 556 TPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLT------PREERVLRMR 609
Query: 469 FGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYLRQHM 517
FG+ D TL E+ +++RE +R+ E K L KLKHP+R LR +
Sbjct: 610 FGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFL 658
Score = 49 (22.3 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
Identities = 18/103 (17%), Positives = 47/103 (45%)
Query: 169 EDEKVVTKTRKTDSKDEHEKIEKLVREYSYSTDLVSLDWKKMKIPP-VLSSTEHTWLFKL 227
ED+K + + +++K++ E + ++ D +PP +SS + + +
Sbjct: 8 EDQKPEDQEDEVSLDMSQAQVKKMIAE-AREKGYITYDQLNQVLPPDQVSSEQIEDVMSM 66
Query: 228 MQPMKVFVQVKEQLQKDLGREPTDVELAEATN---MSAAQVKK 267
+ M + + E+ +++ + TD+ E+ ++ AQ +K
Sbjct: 67 LSEMGINIIEDEEAEEEEQKGSTDLITTESNREVALAGAQAEK 109
>TIGR_CMR|APH_0576 [details] [associations]
symbol:APH_0576 "RNA polymerase sigma factor RpoD"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393 OMA:KISFICE
ProtClustDB:CLSK749621 RefSeq:YP_505167.1 ProteinModelPortal:Q2GKD4
SMR:Q2GKD4 STRING:Q2GKD4 GeneID:3930981 KEGG:aph:APH_0576
PATRIC:20949818 BioCyc:APHA212042:GHPM-600-MONOMER Uniprot:Q2GKD4
Length = 627
Score = 357 (130.7 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 91/255 (35%), Positives = 137/255 (53%)
Query: 263 AQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRF 322
A+++K A+ ++IK NLRLV+ + KKY G +F DL Q G GL+ A+D+F
Sbjct: 378 AKIQKHERTANRAKQEMIKANLRLVVSIAKKYSN---RGLQFLDLVQEGNIGLMKAVDKF 434
Query: 323 EPKRRFRLSTYGLFWIRHAIIRSMTVSSFT-RVPFGLESTSIMQVRGEIQRAKLELLFEL 381
+ KR ++ STY +W+R AI R++ + T R+P +++ +I R ++L E+
Sbjct: 435 DYKRGYKFSTYATWWVRQAITRAIADQARTIRIP-----VHMIETVNKINRTLRQMLHEI 489
Query: 382 KRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEE-FINGITDVDGVENENQ 440
R PT EE+ +NI+ E+ R+VMK K +SL S G F + I D V+ EN
Sbjct: 490 GREPTLEELSARLNINVEKIRKVMKIVKDPVSLESPIGDDDSSTFGDCIEDKRAVKPENA 549
Query: 441 RQPAXXXXXXXXXXXXXKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVK 499
A PKE ++R RFG+ G D TL E+ N++RE +R+ E K
Sbjct: 550 AVLADLREITTKVLSTLTPKEERILRMRFGIGKSGKDHTLEEVGRLFNVTRERIRQIEAK 609
Query: 500 GLMKLKHPTRVDYLR 514
L KL+HP+R LR
Sbjct: 610 ALRKLRHPSRARKLR 624
>TIGR_CMR|GSU_3089 [details] [associations]
symbol:GSU_3089 "RNA polymerase sigma factor RpoD"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:NP_954130.1 ProteinModelPortal:Q748B8 SMR:Q748B8
GeneID:2686774 KEGG:gsu:GSU3089 PATRIC:22029033 OMA:REMGSVS
ProtClustDB:CLSK924660 BioCyc:GSUL243231:GH27-3063-MONOMER
Uniprot:Q748B8
Length = 577
Score = 349 (127.9 bits), Expect = 4.5e-30, P = 4.5e-30
Identities = 107/375 (28%), Positives = 187/375 (49%)
Query: 157 LSLDKRIEL---RKNEDEKVVTKTRKTDSKDEH-EKIEKLVREYSYSTDLVSLDWKKM-K 211
LS +R EL R+ EK+ KD H KI + ++E S D + + + K
Sbjct: 207 LSASRRQELLAERQELKEKLAEMVTSLRLKDRHIAKIAQRLKELSAKVDTIMAEIAAIEK 266
Query: 212 IPPVLSST--EHTWLFKLMQPMKVFVQVKEQLQKDL-GREPTDVELAEATNMSAAQVKKC 268
V + T E + + +K+ ++ ++ +K + E ++ E + A ++
Sbjct: 267 EAGVSADTLKEIAASEAVGKGIKLSLEDAQKHEKKVRSAEKKLKKVEEESGFKARELSDA 326
Query: 269 LEV---GRA----ARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDR 321
L G A A+++L++ NLRLV+ + KKY G +F DL Q G GL+ A+D+
Sbjct: 327 LRAIDRGEAKSKLAKSELVEANLRLVVSIAKKYTN---RGLQFLDLIQEGNIGLMKAVDK 383
Query: 322 FEPKRRFRLSTYGLFWIRHAIIRSMTVSSFT-RVPFGLESTSIMQVRGEIQRAKLELLFE 380
FE +R ++ STY +WIR AI R++ + T R+P +++ ++ R +L+ E
Sbjct: 384 FEYQRGYKFSTYATWWIRQAITRAIADQARTIRIP-----VHMIETINKLIRTSRQLVQE 438
Query: 381 LKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENENQ 440
+ R P+ EEI + +N+ ++ R+V+K +K +SL + G ++ + + GV + +
Sbjct: 439 IGREPSPEEIAERMNLPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKGVVSPLE 498
Query: 441 RQ-PAXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499
A P+E V+R RFG+ K D TL E+ + ++RE +R+ E K
Sbjct: 499 AVIKANLSEQTARVLATLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAK 558
Query: 500 GLMKLKHPTRVDYLR 514
L KL+HP+R LR
Sbjct: 559 ALRKLRHPSRAKKLR 573
>TIGR_CMR|ECH_0760 [details] [associations]
symbol:ECH_0760 "RNA polymerase sigma factor RpoD"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:YP_507558.1 ProteinModelPortal:Q2GG75 SMR:Q2GG75
STRING:Q2GG75 GeneID:3927201 KEGG:ech:ECH_0760 PATRIC:20576954
OMA:KISFICE ProtClustDB:CLSK749621
BioCyc:ECHA205920:GJNR-763-MONOMER Uniprot:Q2GG75
Length = 622
Score = 348 (127.6 bits), Expect = 9.3e-30, P = 9.3e-30
Identities = 90/255 (35%), Positives = 138/255 (54%)
Query: 264 QVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFE 323
+++K A+ ++IK NLRLV+ + KKY G +F DL Q G GL+ A+D+F+
Sbjct: 374 KIQKHERAANQAKQEMIKANLRLVVSIAKKYSN---RGLQFLDLVQEGNIGLMKAVDKFD 430
Query: 324 PKRRFRLSTYGLFWIRHAIIRSMTVSSFT-RVPFGLESTSIMQVRGEIQRAKLELLFELK 382
KR ++ STY +W+R AI R++ + T R+P +++ +I R ++L E+
Sbjct: 431 YKRGYKFSTYATWWVRQAITRAIADQARTIRIP-----VHMIETVNKINRTLRQMLHEMG 485
Query: 383 RVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEE-FINGITDVDGVENENQR 441
R PT EE+ +NI+ ++ R+VMK K +SL S G F + I D V+ E+
Sbjct: 486 REPTLEELSARLNINVDKIRKVMKIVKDPVSLESPIGDDDSSTFGDCIEDKRAVKPEDAA 545
Query: 442 QPAXXXXXXXXXXXXXKPKESLVIRQRFGLDGKG--DRTLGEIAGNLNISREMVRKHEVK 499
A PKE ++R RFG+ GKG D TL E+ N++RE +R+ E K
Sbjct: 546 VLADLREITTKVLSTLTPKEERILRMRFGI-GKGGKDHTLEEVGKLFNVTRERIRQIEAK 604
Query: 500 GLMKLKHPTRVDYLR 514
L KL+HP+R LR
Sbjct: 605 ALRKLRHPSRARKLR 619
>TIGR_CMR|CBU_1596 [details] [associations]
symbol:CBU_1596 "RNA polymerase sigma factor RpoD"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 EMBL:AF273254
RefSeq:NP_820579.1 HSSP:P00579 ProteinModelPortal:Q83BB6 SMR:Q83BB6
PRIDE:Q83BB6 GeneID:1209506 KEGG:cbu:CBU_1596 PATRIC:17931957
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH ProtClustDB:CLSK914891
BioCyc:CBUR227377:GJ7S-1575-MONOMER TIGRFAMs:TIGR02393
Uniprot:Q83BB6
Length = 698
Score = 336 (123.3 bits), Expect = 1.5e-28, Sum P(2) = 1.5e-28
Identities = 89/307 (28%), Positives = 160/307 (52%)
Query: 217 SSTEHTWLFKLMQPMKVFVQVKEQLQKDLGREPTDV-ELAEATNMSAAQVKKC---LEVG 272
+ T WL + K + E+ K++ R ++ +L E N++ ++K+ + +G
Sbjct: 392 NETNMKWLEQYKNENKEQAKRLEKYSKEIYRAQRNLAQLEEQNNLNIQEIKEINRRVAIG 451
Query: 273 RA----ARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRF 328
A A+ ++I+ NLRLV+ + KKY G +F DL Q G GL+ A+D+FE +R +
Sbjct: 452 EAKSRRAKKEMIEANLRLVISIAKKYTN---RGLQFLDLIQEGNIGLMKAVDKFEYRRGY 508
Query: 329 RLSTYGLFWIRHAIIRSMTVSSFT-RVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTD 387
+ STY +WIR AI RS+ + T R+P +++ ++ R ++L E T
Sbjct: 509 KFSTYATWWIRQAITRSIADQARTIRIP-----VHMIETINKLNRISRQILQETGIEATP 563
Query: 388 EEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFING-ITDVDGVENENQRQPAXX 446
EE+ + +++ E+ R+V+K +K +S+ + G ++ + I D++ + A
Sbjct: 564 EELGRRMDMPEEKVRKVLKIAKEPISMETPIGEDEDSNLGDFIEDINMESPVDFATSAGL 623
Query: 447 XXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506
P+E+ V+R RFG+D D TL E+ +++RE +R+ E K L KL+H
Sbjct: 624 MEATREILSTLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 683
Query: 507 PTRVDYL 513
P+R + L
Sbjct: 684 PSRAEKL 690
Score = 43 (20.2 bits), Expect = 1.5e-28, Sum P(2) = 1.5e-28
Identities = 17/88 (19%), Positives = 41/88 (46%)
Query: 161 KRIELRKNEDEKVVTKTRKTDSKDEHEKIEKLVREYSYSTDLVSLDWKKMKIPPVLSSTE 220
K E+ + D ++ + ++D + +E + +++ + +TD V + ++M +L+
Sbjct: 145 KVFEIPPDADSLLLEEDTQSDDDEINEDVAEVLATETRTTDPVRMYMREMGSVELLTREG 204
Query: 221 HTWLFK-----LMQPMKVFVQVKEQLQK 243
+ K + Q M VQ E ++K
Sbjct: 205 EIVIAKRIEEGIRQVMGAVVQYPELIEK 232
Score = 40 (19.1 bits), Expect = 3.1e-28, Sum P(2) = 3.1e-28
Identities = 39/205 (19%), Positives = 81/205 (39%)
Query: 5 TISSSPARSPIGLSTISHRSTSKRPLIVAFKADKSNNQALFSPQEQIPLPIETPKRHQKR 64
T+ +PA+ P ++ +S ++ +V+ K+ + +P + P + +
Sbjct: 38 TVKRAPAK-PKSVTVAKTKSKKEKAKVVSQPLPKTAEKKPSAPPSETQQPKIGENAAESQ 96
Query: 65 RENSRKRLERVK--GVFSDEASPCTLDVDYNEAAAKLENIY-KLSP-AVTTSEVKYADXX 120
R LE K G E L DY + + ++E I +L+ + E+ D
Sbjct: 97 RLGFGALLEEAKNKGYLVHEDLINLLPNDYADPS-QMEGIIGRLTEMGIKVFEIP-PDAD 154
Query: 121 XXXXXXXXXXIGEVEKKSDDVSGKPVVRNQVKRPKRLSLDKR--IELRKNEDEKVVTKTR 178
+ ++ ++DV+ + P R+ + + +EL E E V+ K
Sbjct: 155 SLLLEEDTQS--DDDEINEDVAEVLATETRTTDPVRMYMREMGSVELLTREGEIVIAKRI 212
Query: 179 KTDSKD------EH-EKIEKLVREY 196
+ + ++ E IEK ++EY
Sbjct: 213 EEGIRQVMGAVVQYPELIEKFIKEY 237
Score = 38 (18.4 bits), Expect = 5.0e-28, Sum P(2) = 5.0e-28
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 49 EQIPLPIETPKRHQKRRENSRKRLERVKGVFSDEASPCTLDVDYNEAAAKLENIYKLS 106
E P P+ T ++H + + R + + +A P TL + +A A+L + +KLS
Sbjct: 292 ESGPDPLIT-QQHMEELKKLYGRYQNAIKRYGKKA-PATLK--HQKALAELFSTFKLS 345
>TIGR_CMR|BA_4515 [details] [associations]
symbol:BA_4515 "RNA polymerase sigma-43 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 KO:K03086 TIGRFAMs:TIGR02393 HSSP:Q9EZJ8
ProtClustDB:PRK09210 RefSeq:NP_846739.1 RefSeq:YP_021160.1
RefSeq:YP_030442.1 ProteinModelPortal:Q81LU5 SMR:Q81LU5
IntAct:Q81LU5 DNASU:1088240 EnsemblBacteria:EBBACT00000011556
EnsemblBacteria:EBBACT00000017175 EnsemblBacteria:EBBACT00000020140
GeneID:1088240 GeneID:2819028 GeneID:2852221 KEGG:ban:BA_4515
KEGG:bar:GBAA_4515 KEGG:bat:BAS4194 OMA:AERMSSF
BioCyc:BANT260799:GJAJ-4250-MONOMER
BioCyc:BANT261594:GJ7F-4392-MONOMER Uniprot:Q81LU5
Length = 373
Score = 319 (117.4 bits), Expect = 2.1e-28, P = 2.1e-28
Identities = 95/307 (30%), Positives = 158/307 (51%)
Query: 216 LSSTEHTW-LFKLMQP--MKVFVQVKEQLQKDLGREPTDVELAEATNMSAAQVKKCLEVG 272
++ TE + L L P +K+ V+ L K++GR D+ AE A +++ E
Sbjct: 80 ITKTEEEFDLNDLSVPPGVKINDPVRMYL-KEIGR--VDLLSAEEEIRLATRIE---EGD 133
Query: 273 RAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLST 332
A+ +L + NLRLV+ + K+Y G F DL Q G GLI A+++F+ ++ F+ ST
Sbjct: 134 EEAKRRLAEANLRLVVSIAKRYV---GRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFST 190
Query: 333 YGLFWIRHAIIRSMTVSSFT-RVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEII 391
Y +WIR AI R++ + T R+P + T +R +QR +LL +L R P+ EEI
Sbjct: 191 YATWWIRQAITRAIADQARTIRIPVHMVETINKLIR--VQR---QLLQDLGREPSPEEIG 245
Query: 392 QGVNISPERYREVMKASKPILSLHSRHGVTQEEFING-ITDVDGVENENQRQPAXXXXXX 450
+ ++++PE+ RE++K ++ +SL + G + + I D + +
Sbjct: 246 EEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQL 305
Query: 451 XXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRV 510
+E V+R RFGLD RTL E+ ++RE +R+ E K L KL+HP+R
Sbjct: 306 EDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 365
Query: 511 DYLRQHM 517
L+ +
Sbjct: 366 KRLKDFL 372
>TAIR|locus:2057996 [details] [associations]
symbol:SIGF "AT2G36990" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=TAS]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0009536 "plastid"
evidence=IDA] [GO:0016987 "sigma factor activity" evidence=ISS;IDA]
[GO:0071483 "cellular response to blue light" evidence=IEP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA;IMP] [GO:0071482 "cellular response to light stimulus"
evidence=IMP] [GO:0090351 "seedling development" evidence=IMP]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
process" evidence=RCA] [GO:0019288 "isopentenyl diphosphate
biosynthetic process, mevalonate-independent pathway" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0009507 GO:GO:0045893
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AC006922
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 GO:GO:0090351
eggNOG:COG0568 HSSP:Q9EZJ8 GO:GO:0001053 InterPro:IPR016262
PIRSF:PIRSF000767 GO:GO:0071483 EMBL:AB029916 EMBL:AJ277389
EMBL:AY059768 EMBL:AY091182 EMBL:AJ250812 IPI:IPI00546728
PIR:B84787 PIR:T52653 RefSeq:NP_565856.1 UniGene:At.1453
ProteinModelPortal:Q9LD95 SMR:Q9LD95 IntAct:Q9LD95 STRING:Q9LD95
PaxDb:Q9LD95 PRIDE:Q9LD95 EnsemblPlants:AT2G36990.1 GeneID:818273
KEGG:ath:AT2G36990 GeneFarm:23 TAIR:At2g36990 InParanoid:Q9LD95
OMA:HIAKQYQ PhylomeDB:Q9LD95 ProtClustDB:CLSN2688741
Genevestigator:Q9LD95 Uniprot:Q9LD95
Length = 547
Score = 335 (123.0 bits), Expect = 2.5e-28, P = 2.5e-28
Identities = 107/409 (26%), Positives = 191/409 (46%)
Query: 105 LSPAVTTSEVKYADXXXXXXXXXXXXIGEVEKK-SDDVSGKPVVRNQVKRPKRLSL--DK 161
L+ A V A + + E SD++ + + P++ ++ K
Sbjct: 132 LADAELCDVVALAQKALSASKQAALLVDDTEANPSDNIKDSLSTSSSMSLPEKGNIVRSK 191
Query: 162 RIELRKNEDEKVVTKTRKTDSKD---EHEKIEKLVREYSYSTDLVSLDWKKMKIPPVLSS 218
R +L + + K+ D + + +K ++ + + D + L + +L++
Sbjct: 192 R-QLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTA 250
Query: 219 TEHTWLFKLMQPMKVFVQVKEQLQKDLGREPTDVELAEATNMSAAQVKKCLEVGRAARNK 278
E L +Q + +VK +L+ G EPT E AEA +S+ +K + GR++R K
Sbjct: 251 KEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREK 310
Query: 279 LIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWI 338
LI NLRLV+ + K+Y Q+ G FQDL Q G GL+ ++++F+P+ R +TY +WI
Sbjct: 311 LITANLRLVVHIAKQY-QN--RGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWI 367
Query: 339 RHAIIRSMTVSSFT-RVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEIIQGVNIS 397
R +I +S+ +S T R+P ++ + G++ A+ + E P+ EE+ V +S
Sbjct: 368 RQSIRKSIFQNSRTIRLP-----ENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVS 422
Query: 398 PERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENENQRQ-PAXXXXXXXXXXXX 456
E+ +++ ++ LS+ Q+ IT G+E
Sbjct: 423 TEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNV 482
Query: 457 XKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 505
PKE +I+ RFG+DG R+L EI +S+E VR+ E + L +LK
Sbjct: 483 LSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLK 531
>TIGR_CMR|CHY_0455 [details] [associations]
symbol:CHY_0455 "RNA polymerase sigma factor RpoD"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007127 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 HOGENOM:HOG000270273
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG0568 KO:K03086 TIGRFAMs:TIGR02393 RefSeq:YP_359316.1
ProteinModelPortal:Q3AEW8 SMR:Q3AEW8 STRING:Q3AEW8 GeneID:3727139
KEGG:chy:CHY_0455 PATRIC:21274071 OMA:IDTIEDT ProtClustDB:PRK09210
BioCyc:CHYD246194:GJCN-456-MONOMER Uniprot:Q3AEW8
Length = 370
Score = 318 (117.0 bits), Expect = 2.7e-28, P = 2.7e-28
Identities = 88/277 (31%), Positives = 140/277 (50%)
Query: 243 KDLGREPTDVELAEATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGP 302
K++GR P L + A+ K+ E A+ KL + NLRLV+ + K+Y G
Sbjct: 106 KEIGRVPL---LTPEEEIELAKRKE--EGDEEAKRKLAEANLRLVVSIAKRYV---GRGM 157
Query: 303 RFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFT-RVPFGLEST 361
F DL Q G GL+ A+++F+ ++ ++ STY +WIR AI R++ + T R+P + T
Sbjct: 158 LFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVET 217
Query: 362 SIMQVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVT 421
+R + R LL EL R PT EEI + + IS ++ RE+MK ++ +SL + G
Sbjct: 218 INKLIR--VSR---NLLQELGREPTPEEIAKEMGISEDKVREIMKIAQEPVSLETPIGEE 272
Query: 422 QEEFING-ITDVDGVENENQRQPAXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLG 480
++ + + D D + +E V+R RFGLD RTL
Sbjct: 273 EDSHLGDFVEDPDAKAPVEEASYTLLREQLDEVLKTLTEREQKVLRLRFGLDDGRARTLE 332
Query: 481 EIAGNLNISREMVRKHEVKGLMKLKHPTRVDYLRQHM 517
E+ ++RE +R+ E K L KL+HP+R L+ +
Sbjct: 333 EVGQIFGVTRERIRQIEAKALRKLRHPSRSKKLKDFL 369
>UNIPROTKB|P00579 [details] [associations]
symbol:rpoD species:83333 "Escherichia coli K-12"
[GO:0016987 "sigma factor activity" evidence=IEA;IDA] [GO:0009408
"response to heat" evidence=IEP] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000943 InterPro:IPR007127 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR007631
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0009408 EMBL:U28379 PDB:1TLH PDBsum:1TLH GO:GO:0016987
PDB:3IYD PDBsum:3IYD SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 EMBL:J01687 PDB:3T72 PDBsum:3T72 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393
PIR:A65095 RefSeq:NP_417539.1 RefSeq:YP_491259.1 PDB:1SIG PDB:2P7V
PDBsum:1SIG PDBsum:2P7V ProteinModelPortal:P00579 SMR:P00579
DIP:DIP-10773N IntAct:P00579 MINT:MINT-1220595 PaxDb:P00579
PRIDE:P00579 EnsemblBacteria:EBESCT00000001124
EnsemblBacteria:EBESCT00000001125 EnsemblBacteria:EBESCT00000001126
EnsemblBacteria:EBESCT00000001127 EnsemblBacteria:EBESCT00000001128
EnsemblBacteria:EBESCT00000001129 EnsemblBacteria:EBESCT00000001130
EnsemblBacteria:EBESCT00000017672 GeneID:12932074 GeneID:947567
KEGG:ecj:Y75_p2993 KEGG:eco:b3067 PATRIC:32121550 EchoBASE:EB0889
EcoGene:EG10896 ProtClustDB:PRK05658 BioCyc:EcoCyc:RPOD-MONOMER
BioCyc:ECOL316407:JW3039-MONOMER BioCyc:MetaCyc:RPOD-MONOMER
BindingDB:P00579 ChEMBL:CHEMBL5329 EvolutionaryTrace:P00579
Genevestigator:P00579 Uniprot:P00579
Length = 613
Score = 334 (122.6 bits), Expect = 5.7e-28, P = 5.7e-28
Identities = 86/311 (27%), Positives = 160/311 (51%)
Query: 217 SSTEHTWLFKLMQPMKVFVQVKEQLQKDLGREPTDVE-LAEATNMSAAQVK---KCLEVG 272
+ T TW + K + + + +++ R ++ + E T ++ QVK + + +G
Sbjct: 309 NETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIG 368
Query: 273 RA----ARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRF 328
A A+ ++++ NLRLV+ + KKY G +F DL Q G GL+ A+D+FE +R +
Sbjct: 369 EAKARRAKKEMVEANLRLVISIAKKYTN---RGLQFLDLIQEGNIGLMKAVDKFEYRRGY 425
Query: 329 RLSTYGLFWIRHAIIRSMTVSSFT-RVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTD 387
+ STY +WIR AI RS+ + T R+P +++ ++ R ++L E+ R PT
Sbjct: 426 KFSTYATWWIRQAITRSIADQARTIRIP-----VHMIETINKLNRISRQMLQEMGREPTP 480
Query: 388 EEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENE-NQRQPAXX 446
EE+ + + + ++ R+V+K +K +S+ + G ++ + + +E +
Sbjct: 481 EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL 540
Query: 447 XXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506
+E+ V+R RFG+D D TL E+ +++RE +R+ E K L KL+H
Sbjct: 541 RAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600
Query: 507 PTRVDYLRQHM 517
P+R + LR +
Sbjct: 601 PSRSEVLRSFL 611
>TAIR|locus:2025650 [details] [associations]
symbol:SIG2 "AT1G08540" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0071482 "cellular response to light stimulus"
evidence=IEP;IMP] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IDA;TAS] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0006399 "tRNA metabolic process"
evidence=IMP] [GO:0001053 "plastid sigma factor activity"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0009637 "response to blue light"
evidence=IGI;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0006098 "pentose-phosphate shunt"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010218
"response to far red light" evidence=RCA] [GO:0016117 "carotenoid
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0034660 "ncRNA metabolic process" evidence=RCA]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00716
EMBL:CP002684 GO:GO:0009507 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009637
GO:GO:0010114 GO:GO:0009658 EMBL:AC006932 GO:GO:0006399
EMBL:AC003981 GO:GO:0071482 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 UniGene:At.23349 HSSP:Q9EZJ8
GO:GO:0001053 EMBL:AB004293 EMBL:AB019943 EMBL:AB004820
EMBL:AF015543 EMBL:Y15362 EMBL:AK118947 EMBL:BT030346
IPI:IPI00546921 PIR:T00707 RefSeq:NP_172330.1
ProteinModelPortal:O22056 SMR:O22056 STRING:O22056 PRIDE:O22056
EnsemblPlants:AT1G08540.1 GeneID:837376 KEGG:ath:AT1G08540
TAIR:At1g08540 InParanoid:O22056 OMA:WIKQAVR PhylomeDB:O22056
ProtClustDB:CLSN2682814 Genevestigator:O22056 InterPro:IPR016262
PIRSF:PIRSF000767 Uniprot:O22056
Length = 572
Score = 324 (119.1 bits), Expect = 7.2e-27, P = 7.2e-27
Identities = 103/394 (26%), Positives = 187/394 (47%)
Query: 131 IGEVE-KKSDDVS---GKPVVRNQVKRPKRLSLDKRIELRKNEDEKVVTKTRKTDSKDEH 186
IG++E +K ++V +P V V+ ++ R R EK + +
Sbjct: 188 IGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKAR---RAKGLEKTASGIPSVKTGSSP 244
Query: 187 EKIEKLVREYSYSTDLVSLDWKKMKIPPVLSSTEHTWLFKLMQPMKVFVQVKEQLQKDLG 246
+K + +E ++ L L + EH L +Q + +++ +L + G
Sbjct: 245 KKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHE-LSAGIQDLLKLERLQTELTERSG 303
Query: 247 REPTDVELAEATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQD 306
R+PT + A A + +++ + G ++K+IK N+RLV+ + K Y Q G QD
Sbjct: 304 RQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNY-Q--GAGMNLQD 360
Query: 307 LCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSS-FTRVPFGLESTSIMQ 365
L Q G +GL+ ++F+ + F+ STY +WI+ A+ +S++ S R+PF + ++
Sbjct: 361 LVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHM-----VE 415
Query: 366 VRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQE-E 424
++ A+ +L E + P +EEI + +S +R V+ + KP SL + G+ Q +
Sbjct: 416 ATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLK 475
Query: 425 FINGITDVDGVENENQRQPAXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAG 484
I D + V +E+ +E VIR RFG++ +TL EI
Sbjct: 476 PSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGE 535
Query: 485 NLNISREMVRKHEVKGLMKLKHPTRVDYLRQHMV 518
+ +SRE VR+ E KLK+ R ++L+Q++V
Sbjct: 536 MMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569
>TIGR_CMR|CPS_4334 [details] [associations]
symbol:CPS_4334 "RNA polymerase sigma-70 factor"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393
RefSeq:YP_270983.1 ProteinModelPortal:Q47W39 SMR:Q47W39
STRING:Q47W39 GeneID:3522880 KEGG:cps:CPS_4334 PATRIC:21471513
BioCyc:CPSY167879:GI48-4343-MONOMER Uniprot:Q47W39
Length = 616
Score = 324 (119.1 bits), Expect = 9.6e-27, P = 9.6e-27
Identities = 80/274 (29%), Positives = 146/274 (53%)
Query: 253 ELAEATNMSAAQVK---KCLEVGRA----ARNKLIKHNLRLVLFVIKKYFQDFANGPRFQ 305
++ E T+++ +K + + +G A A+ ++++ NLRLV+ + KKY G +F
Sbjct: 348 QIEEETHLNIHGIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTN---RGLQFL 404
Query: 306 DLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFT-RVPFGLESTSIM 364
DL Q G GL+ A+D+FE +R ++ STY +WIR AI RS+ + T R+P ++
Sbjct: 405 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIP-----VHMI 459
Query: 365 QVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEE 424
+ ++ R ++L E+ R PT EE+ + + + ++ R+V+K +K +S+ + G ++
Sbjct: 460 ETINKLNRVSRQMLQEMGREPTPEELAERMVMPEDKIRKVLKIAKEPISMETPIGDDEDS 519
Query: 425 FING-ITDVDGVENENQRQPAXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIA 483
+ I D G + +E+ V+R RFG+D D TL E+
Sbjct: 520 HLGDFIEDGSGELPVDSATSENLKGATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVG 579
Query: 484 GNLNISREMVRKHEVKGLMKLKHPTRVDYLRQHM 517
+++RE +R+ E K L KL+HP+R + L+ +
Sbjct: 580 KQFDVTRERIRQIEAKALRKLRHPSRSEQLKSFL 613
>UNIPROTKB|P0A602 [details] [associations]
symbol:rpoD "RNA polymerase sigma factor RpoD" species:1773
"Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005618 "cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0009405 "pathogenesis" evidence=IMP] [GO:0009415
"response to water stimulus" evidence=IEP] [GO:0016987 "sigma
factor activity" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
[GO:0052572 "response to host immune response" evidence=IEP]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 GO:GO:0009405 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0003677 GO:GO:0052572
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
HOGENOM:HOG000270273 GO:GO:0016987 GO:GO:0009415 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03086
TIGRFAMs:TIGR02393 EMBL:U10059 EMBL:U21134 PIR:B70531
RefSeq:NP_217219.1 RefSeq:NP_337278.1 RefSeq:YP_006516147.1
ProteinModelPortal:P0A602 SMR:P0A602 PRIDE:P0A602
EnsemblBacteria:EBMYCT00000003025 EnsemblBacteria:EBMYCT00000070252
GeneID:13319430 GeneID:887477 GeneID:925521 KEGG:mtc:MT2777
KEGG:mtu:Rv2703 KEGG:mtv:RVBD_2703 PATRIC:18127848
TubercuList:Rv2703 OMA:LMSEMAE ProtClustDB:PRK05901 Uniprot:P0A602
Length = 528
Score = 318 (117.0 bits), Expect = 2.6e-26, P = 2.6e-26
Identities = 92/290 (31%), Positives = 152/290 (52%)
Query: 235 VQVKEQLQKDLGREPTDVELAE-ATNMSAAQVKKCLEV---GRAARNKLIKHNLRLVLFV 290
V++ ++++ L EL+E + AAQ + + + G A+N L++ NLRLV+ +
Sbjct: 247 VELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSL 306
Query: 291 IKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSS 350
K+Y G F DL Q G GLI A+++F+ + ++ STY +WIR AI R+M +
Sbjct: 307 AKRYT---GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQA 363
Query: 351 FT-RVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASK 409
T R+P + ++ G IQR ELL +L R PT EE+ + ++I+PE+ E+ + ++
Sbjct: 364 RTIRIP--VHMVEVINKLGRIQR---ELLQDLGREPTPEELAKEMDITPEKVLEIQQYAR 418
Query: 410 PILSLHSRHGVTQEEFING-ITDVDGVENENQRQPAXXXXXXXXXXXXXKPKESLVIRQR 468
+SL G + + I D + V + +E+ V+R R
Sbjct: 419 EPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLR 478
Query: 469 FGL-DGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYLRQHM 517
FGL DG+ RTL EI ++RE +R+ E K + KL+HP+R LR ++
Sbjct: 479 FGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 527
>TIGR_CMR|SO_1284 [details] [associations]
symbol:SO_1284 "RNA polymerase sigma-70 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 HOGENOM:HOG000270272
KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393 RefSeq:NP_716906.1
ProteinModelPortal:Q8EHE1 SMR:Q8EHE1 GeneID:1169104
KEGG:son:SO_1284 PATRIC:23522218 ProtClustDB:CLSK906181
Uniprot:Q8EHE1
Length = 616
Score = 320 (117.7 bits), Expect = 2.9e-26, P = 2.9e-26
Identities = 83/311 (26%), Positives = 158/311 (50%)
Query: 217 SSTEHTWLFKLMQPMKVFVQVKEQLQKDLGREPTDVE-LAEATNMSAAQVK---KCLEVG 272
+ T W K + + +++D+ R + + + E T + A +K + + +G
Sbjct: 312 NETNLDWFEAEKTSNKPYAEGLRMVEEDVQRCRSKLAAIEEETGLVIAAIKDINRRMSIG 371
Query: 273 RA----ARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRF 328
A A+ ++++ NLRLV+ + KKY G +F DL Q G GL+ A+D+FE +R +
Sbjct: 372 EAKARRAKKEMVEANLRLVISIAKKYTN---RGLQFLDLIQEGNIGLMKAVDKFEYRRGY 428
Query: 329 RLSTYGLFWIRHAIIRSMTVSSFT-RVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTD 387
+ STY +WIR AI RS+ + T R+P +++ ++ R ++L E+ R P+
Sbjct: 429 KFSTYATWWIRQAITRSIADQARTIRIP-----VHMIETINKLNRISRQMLQEMGREPSP 483
Query: 388 EEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENE-NQRQPAXX 446
EE+ + + + ++ R+V+K +K +S+ + G ++ + + +E +
Sbjct: 484 EELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESL 543
Query: 447 XXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506
+E+ V+R RFG+D D TL E+ +++RE +R+ E K L KL+H
Sbjct: 544 KSATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 603
Query: 507 PTRVDYLRQHM 517
P+R + L+ +
Sbjct: 604 PSRSEILKSFL 614
>TIGR_CMR|CJE_1081 [details] [associations]
symbol:CJE_1081 "RNA polymerase sigma factor RpoD"
species:195099 "Campylobacter jejuni RM1221" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
ProtClustDB:PRK05658 RefSeq:YP_179074.1 ProteinModelPortal:Q5HUG1
SMR:Q5HUG1 STRING:Q5HUG1 GeneID:3231590 KEGG:cjr:CJE1081
PATRIC:20043971 OMA:ILDAICS BioCyc:CJEJ195099:GJC0-1107-MONOMER
Uniprot:Q5HUG1
Length = 622
Score = 318 (117.0 bits), Expect = 5.1e-26, P = 5.1e-26
Identities = 101/343 (29%), Positives = 172/343 (50%)
Query: 174 VTKTRKTDSKDEHEKIEKLVREYSYSTDLVSLDWKK-----MKIPPVLSSTEHTWLFKLM 228
+ K+ +T K + E+ +K ++ Y + S + KK +K LS E T
Sbjct: 276 IVKSMETALKSD-EEFDKELKRLEYRLPMFSDELKKRHADILKDITKLSKEEITERALET 334
Query: 229 QPMKVFVQVKEQLQ-KDLGREPTDVELAEATNMSAAQVKKCLEVGRAARNKLIKHNLRLV 287
+ ++++K+ Q K+ + D+E + + Q+K+ ++ A+ ++ K NLRLV
Sbjct: 335 TMVSTYMEIKKLFQTKEASEKSFDLEKSRLKEI-LEQIKRGKKISDEAKGRMAKSNLRLV 393
Query: 288 LFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMT 347
+ + K+Y G F DL Q G GL+ A+D+FE KR ++ STY +WIR AI R++
Sbjct: 394 VSIAKRYTN---RGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIA 450
Query: 348 VSSFT-RVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMK 406
+ T R+P + T I Q+ +I R L+ + + P I + V +S ++ ++V+K
Sbjct: 451 DQARTIRIPIHMIET-INQIN-KIIREHLQ---KDGKEPDVSVIAKEVGLSVDKVKQVIK 505
Query: 407 ASKPILSLHSRHGVTQE-EFINGITDVDGVENENQRQPAXXXXXXXXXXXXXKPKESLVI 465
+K +SL + G + +F + + D + + + +E VI
Sbjct: 506 ITKEPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAVI 565
Query: 466 RQRFGL-DGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 507
R RFGL D + DRTL EI LN++RE VR+ E + KLKHP
Sbjct: 566 RMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHP 608
>TIGR_CMR|DET_0551 [details] [associations]
symbol:DET_0551 "RNA polymerase sigma factor RpoD"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:YP_181295.1 ProteinModelPortal:Q3Z904 SMR:Q3Z904
STRING:Q3Z904 GeneID:3230115 KEGG:det:DET0551 PATRIC:21608171
OMA:FISHLER ProtClustDB:CLSK935624
BioCyc:DETH243164:GJNF-551-MONOMER Uniprot:Q3Z904
Length = 520
Score = 304 (112.1 bits), Expect = 9.2e-26, Sum P(2) = 9.2e-26
Identities = 84/251 (33%), Positives = 133/251 (52%)
Query: 269 LEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRF 328
++ RA R+ LI+ NLRLV+ V KK+ G DL Q G GLI A+++F+ R F
Sbjct: 278 IDAKRAERH-LIQANLRLVVSVAKKHI---GRGMPLLDLIQEGNIGLIRAVEKFDFHRGF 333
Query: 329 RLSTYGLFWIRHAIIRSMTVSSFT-RVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTD 387
+ STY +WIR AI R++ + T R+P + T I ++ I R +L +L R PT
Sbjct: 334 KFSTYATWWIRQAITRAIADQARTIRIPVHMVET-INKLLS-ISR---QLSQKLGREPTP 388
Query: 388 EEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFING-ITDVDGVENENQRQPAXX 446
+EI +++ PE+ RE+ K S+ +SL S G ++ + I D + + +
Sbjct: 389 DEIAVEMDLPPEKVREIAKVSQLPVSLESPIGEEEDSHLGDFIEDQNALAPPDAASRQLL 448
Query: 447 XXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506
P+E V++ RFGL+ RTL E+ N++RE +R+ E K L KL+H
Sbjct: 449 KEQIDTVLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLRH 508
Query: 507 PTRVDYLRQHM 517
P+R L+ ++
Sbjct: 509 PSRSRKLKDYL 519
Score = 48 (22.0 bits), Expect = 9.2e-26, Sum P(2) = 9.2e-26
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 214 PVLSSTEHTWLFKLMQPMKVFVQVKEQLQKDLGREPTDVE 253
P+LS+ + L K M+ K +++++ + GR P+ E
Sbjct: 112 PLLSAEDEKTLAKKMEEGKRIREIRQECLEKRGRYPSAAE 151
>UNIPROTKB|Q59563 [details] [associations]
symbol:mysB "RNA polymerase sigma factor" species:1773
"Mycobacterium tuberculosis" [GO:0001666 "response to hypoxia"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009408 "response to heat"
evidence=IEP] [GO:0009410 "response to xenobiotic stimulus"
evidence=IEP] [GO:0016987 "sigma factor activity" evidence=IGI]
[GO:0019217 "regulation of fatty acid metabolic process"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] [GO:0043175 "RNA
polymerase core enzyme binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0050708 "regulation of protein secretion" evidence=IDA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0045893 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0003677 GO:GO:0001666
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0019217 GO:GO:0009408 GO:GO:0009410 GO:GO:0050708
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0043175 EMBL:U10059 KO:K03087 HSSP:Q9EZJ8
EMBL:AL123456 PIR:JC5011 RefSeq:NP_217226.1 RefSeq:NP_337285.1
RefSeq:YP_006516154.1 SMR:Q59563 EnsemblBacteria:EBMYCT00000003840
EnsemblBacteria:EBMYCT00000072906 GeneID:13319437 GeneID:888580
GeneID:925516 KEGG:mtc:MT2783 KEGG:mtu:Rv2710 KEGG:mtv:RVBD_2710
PATRIC:18127862 TubercuList:Rv2710 OMA:DHARDPV ProtClustDB:PRK07921
Uniprot:Q59563
Length = 323
Score = 286 (105.7 bits), Expect = 1.1e-24, P = 1.1e-24
Identities = 85/247 (34%), Positives = 122/247 (49%)
Query: 272 GRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLS 331
G AAR L++ NLRLV+ + K+Y G DL Q G GLI A+++F+ + F+ S
Sbjct: 83 GEAARRHLLEANLRLVVSLAKRYT---GRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 139
Query: 332 TYGLFWIRHAIIRSMTVSSFT-RVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEI 390
TY +WIR AI R M S T R+P L + QV ++ R K E+ L R TDEE+
Sbjct: 140 TYATWWIRQAITRGMADQSRTIRLPVHL----VEQVN-KLARIKREMHQHLGREATDEEL 194
Query: 391 IQGVNISPERYREVMKASKPILSLHSRHGVTQEEFING-ITDVDGVENENQRQPAXXXXX 449
I ++ ++++ S+ +SL G +E + I D + + EN
Sbjct: 195 AAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTD 254
Query: 450 XXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTR 509
+E VIR RFGLD RTL +I +SRE VR+ E + KL+H R
Sbjct: 255 IRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHGER 314
Query: 510 VDYLRQH 516
D LR +
Sbjct: 315 ADRLRSY 321
>UNIPROTKB|Q84LK8 [details] [associations]
symbol:SIG6 "Sig6" species:39947 "Oryza sativa Japonica
Group" [GO:0009536 "plastid" evidence=RCA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AP008214 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 HSSP:Q9EZJ8 InterPro:IPR016262 PIRSF:PIRSF000767
OMA:HIAKQYQ ProtClustDB:CLSN2688741 EMBL:AB096012 EMBL:AP005249
EMBL:AP005478 EMBL:AK099922 RefSeq:NP_001061343.1 UniGene:Os.27634
STRING:Q84LK8 EnsemblPlants:LOC_Os08g14450.1 GeneID:4345044
KEGG:osa:4345044 HOGENOM:HOG000070749 Uniprot:Q84LK8
Length = 572
Score = 297 (109.6 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 100/360 (27%), Positives = 171/360 (47%)
Query: 153 RPKRLSLDKRIELRKNEDEKVVTKTRKTDSKDEHEKIEKLVREYSYSTDLVSLDWKKMKI 212
R RL L++R + R + + D+ + EK +K R + L + +
Sbjct: 213 RSTRL-LERRSKRRYAPRASIADVSCSADNSKKKEKSKKYGRVLE-PDEPFKLFLRDRET 270
Query: 213 PPVLSSTEHTWLFKLMQPMKVFVQVKEQLQKDLGREPTDVELAEATNMSAAQVKKCLEVG 272
L++ E LF +Q + + +L+ GREPT E AEA MS+ +++ + G
Sbjct: 271 TEFLTAKEERHLFSKIQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTG 330
Query: 273 RAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLST 332
R R K+ + N RLV+ V +KY + + G QDL Q G GL+ ++F P + R T
Sbjct: 331 RRCREKMARSNFRLVIHVARKY-EGY--GLDIQDLVQDGCSGLMKTFEKFNPSKGCRFPT 387
Query: 333 YGLFWIRHAIIRSMTVSS-FTRVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEII 391
Y +WIR +I +S+ +S R+P S+ + ++ +A++E + E ++ PT+ +
Sbjct: 388 YAYWWIRQSIKKSIFKNSRLIRLP-----ESVYALLRKVGKARMECIMEGEQ-PTNANVA 441
Query: 392 QGVNISPERYREVM-KASKP-ILSLH--SRHGVTQEEFINGITDVDGVENENQR-QPAXX 446
+ I+ E+ ++ K KP + H S GVT +E IT+ VE +
Sbjct: 442 RRAGITIEKLAKLRAKTRKPRSMQDHVWSDEGVTFQE----ITEDPNVEPPDLSVDRMMM 497
Query: 447 XXXXXXXXXXXKPKESLVIRQRFGL-DGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 505
P+E +I RFG+ DG+ +TL I +S+E +R+ + + L KLK
Sbjct: 498 RQQVRDFLGILSPREKEIIEHRFGIHDGE-PKTLHVIGDMFGLSKERIRQLQNRALEKLK 556
>TIGR_CMR|SO_3432 [details] [associations]
symbol:SO_3432 "RNA polymerase sigma factor RpoS"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE014299 GenomeReviews:AE014299_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 KO:K03087 TIGRFAMs:TIGR02394 OMA:KWLDELN
RefSeq:NP_718985.1 HSSP:Q9WX78 ProteinModelPortal:Q8EBR8 SMR:Q8EBR8
GeneID:1171107 KEGG:son:SO_3432 PATRIC:23526552
ProtClustDB:CLSK907167 Uniprot:Q8EBR8
Length = 326
Score = 266 (98.7 bits), Expect = 1.9e-22, P = 1.9e-22
Identities = 82/288 (28%), Positives = 150/288 (52%)
Query: 227 LMQPMKVFVQVKEQLQKDLGREPTDVELAE---ATNMSAAQV----KKCLEVGRAARNKL 279
L+Q + + QV++ LQK+L + T + L E + +SA + +K L+ +RN++
Sbjct: 33 LVQELGLEQQVQDDLQKNL--DATQLYLGEIGFSPLLSAEEEVYFSRKALKGCEKSRNRM 90
Query: 280 IKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIR 339
I+ NLRLV+ + ++Y G DL + G GLI A+++F+P+R FR STY +WIR
Sbjct: 91 IESNLRLVVKIARRYNN---RGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIR 147
Query: 340 HAIIRSMTVSSFT-RVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEIIQGVNISP 398
I R++ + T R+P + + ++ ++ A+ EL +L PT EEI + + +S
Sbjct: 148 QTIERAIMNQTRTIRLPIHV----VKELNVYLRTAR-ELAQKLDHEPTAEEIAEKLQVSS 202
Query: 399 ERYREVMKASKPILSLHSRHGVTQEE-FINGITDVDGVENENQRQPAXXXXXXXXXXXXX 457
++K ++ I S+ G ++ ++ + D D V + + Q
Sbjct: 203 VDVSRMLKLNEKITSVDVPLGGDNDKALLDVLADDDNVGPDYKVQDEDISNSVVKWLNEL 262
Query: 458 KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 505
K+ V+ +RFGL G TL ++ + ++RE VR+ +V+ L +L+
Sbjct: 263 NTKQREVLARRFGLLGYEPSTLEDVGAEIGLTRERVRQIQVEALKRLR 310
>TIGR_CMR|VC_0534 [details] [associations]
symbol:VC_0534 "RNA polymerase sigma factor RpoS"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
KO:K03087 TIGRFAMs:TIGR02394 EMBL:AF000945 PIR:A82312
RefSeq:NP_230185.1 ProteinModelPortal:O51804 SMR:O51804
DNASU:2615203 GeneID:2615203 KEGG:vch:VC0534 PATRIC:20080172
OMA:KWLDELN ProtClustDB:CLSK874000 Uniprot:O51804
Length = 335
Score = 249 (92.7 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 70/242 (28%), Positives = 126/242 (52%)
Query: 266 KKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPK 325
++ L AAR ++I+ NLRLV+ + ++Y G DL + G GLI A+++F+P+
Sbjct: 82 RRALRGDEAARKRMIESNLRLVVKISRRYSN---RGLALLDLIEEGNLGLIRAVEKFDPE 138
Query: 326 RRFRLSTYGLFWIRHAIIRSMTVSSFT-RVPFGLESTSIMQVRGEIQRAKLELLFELKRV 384
R FR STY +WIR I R++ + T R+P + + ++ ++ A+ EL L
Sbjct: 139 RGFRFSTYATWWIRQTIERALMNQTRTIRLPIHV----VKELNIYLRTAR-ELSQRLDHE 193
Query: 385 PTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEE-FINGITDVDGVENENQRQP 443
PT EEI ++ + ++++ ++ I S+ + G ++ ++ + D + E Q
Sbjct: 194 PTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQD 253
Query: 444 AXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMK 503
PK+ V+ +RFGL G TL E+ +N++RE VR+ +V+GL +
Sbjct: 254 DDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRR 313
Query: 504 LK 505
L+
Sbjct: 314 LR 315
Score = 37 (18.1 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 174 VTKTRKTDSKDEHEKIEKLVREYSYSTDLVSLD 206
VTK + D +DE ++ + E + +LV+++
Sbjct: 7 VTKVEEFDFEDEALEVLETDAELTSDEELVAVE 39
>TAIR|locus:2010871 [details] [associations]
symbol:SIGA "AT1G64860" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS;IDA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0071482 "cellular response to light stimulus"
evidence=IEP] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IDA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:2001141 "regulation of RNA biosynthetic process" evidence=IMP]
[GO:0071461 "cellular response to redox state" evidence=IDA]
[GO:0080005 "photosystem stoichiometry adjustment" evidence=IDA]
[GO:0006833 "water transport" evidence=RCA] [GO:0009651 "response
to salt stress" evidence=RCA] [GO:0009750 "response to fructose
stimulus" evidence=RCA] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 EMBL:CP002684
GO:GO:0009507 GO:GO:0006355 GO:GO:0003677 GO:GO:0071461
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AC006193 GO:GO:0071482 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0080005 eggNOG:COG0568 KO:K03086
EMBL:D89993 EMBL:AB019942 EMBL:AB004821 EMBL:AF015542 EMBL:Y14252
EMBL:AF024590 EMBL:AF325036 EMBL:AY062526 EMBL:AY093306
EMBL:AK316773 EMBL:Y14567 IPI:IPI00521776 IPI:IPI00991957
PIR:H96671 PIR:T52642 RefSeq:NP_001185314.1 RefSeq:NP_176666.1
UniGene:At.25556 HSSP:Q9EZJ8 ProteinModelPortal:O24629 SMR:O24629
IntAct:O24629 STRING:O24629 PRIDE:O24629 EnsemblPlants:AT1G64860.1
GeneID:842794 KEGG:ath:AT1G64860 GeneFarm:25 TAIR:At1g64860
InParanoid:O24629 OMA:DHKSRLK ProtClustDB:CLSN2679344
Genevestigator:O24629 GO:GO:0001053 Uniprot:O24629
Length = 502
Score = 272 (100.8 bits), Expect = 5.5e-21, P = 5.5e-21
Identities = 94/304 (30%), Positives = 148/304 (48%)
Query: 215 VLSSTEHTWLFKLMQPMKVFVQVKEQLQKDLGREPTDVELAEATNMSAAQVKKCLEVGRA 274
VLS E L K ++ K +L+ LG EP+D +LA + +S A+++ L
Sbjct: 199 VLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHL 258
Query: 275 ARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYG 334
AR KL N+RLV+ + ++Y D G DL Q G+ GL+ I++F+ + FR+STY
Sbjct: 259 AREKLAMSNVRLVMSIAQRY--DNL-GAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYV 315
Query: 335 LFWIRHAIIRSMTVSSFT-RVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEIIQG 393
+WIR + R++ +S T R+P T + + G I+ AKL L E P+ + I +
Sbjct: 316 YWWIRQGVSRALVDNSRTLRLP-----THLHERLGLIRNAKLRLQ-EKGITPSIDRIAES 369
Query: 394 VNISPERYREVMKASKPILSLH-----SRHGVTQEEFINGITDVDGVENE---NQRQPAX 445
+N+S ++ R +A + SL S +G+ E + I D +EN A
Sbjct: 370 LNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTR-LENNPWHGYDDLAL 428
Query: 446 XXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 505
+E +IR +GLD K T +I+ + +SRE VR+ + L KLK
Sbjct: 429 KEEVSKLISATLGEREKEIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLK 487
Query: 506 HPTR 509
H R
Sbjct: 488 HAAR 491
>TIGR_CMR|GSU_1525 [details] [associations]
symbol:GSU_1525 "RNA polymerase sigma-70 factor family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AE017180 GenomeReviews:AE017180_GR HOGENOM:HOG000270273
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03086 OMA:IDTIEDT RefSeq:NP_952576.1 ProteinModelPortal:Q74CZ4
SMR:Q74CZ4 GeneID:2687268 KEGG:gsu:GSU1525 PATRIC:22025893
ProtClustDB:CLSK828404 BioCyc:GSUL243231:GH27-1508-MONOMER
Uniprot:Q74CZ4
Length = 328
Score = 247 (92.0 bits), Expect = 2.3e-20, P = 2.3e-20
Identities = 73/235 (31%), Positives = 116/235 (49%)
Query: 273 RAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLST 332
+AAR+K+I+ NLRLV+ + K+Y G F DL + G GLI A++RF+ + R ST
Sbjct: 90 KAARDKMIESNLRLVVKIAKRYIN---RGLPFLDLIEEGNMGLIKAVERFKLSKECRFST 146
Query: 333 YGLFWIRHAIIRSMTVSSFT-RVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEII 391
Y +WIR +I R++ S T R+P + S I ++ +I R EL+ L R P+ +E+
Sbjct: 147 YATWWIRQSIERALVNQSRTIRLPVHV-SDDINKML-KITR---ELVQRLNREPSVKEVA 201
Query: 392 QGVNISPERYREVMKASKPILSLHSRHGVTQEEF-INGITDVDGVENENQRQPAXXXXXX 450
+ ++ R +M K S+ G + F I+ I D V +
Sbjct: 202 TEMKVNSAYVRRLMVLLKKTYSIERPMGENSDYFLIDTIEDTSTVSPAVLLEDLNKYEIV 261
Query: 451 XXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 505
E ++ RFGL+ K +TL I + ++RE +R+ E K L KL+
Sbjct: 262 SKWFASLSENEQTILTLRFGLEDKEPQTLDTIGRSFGVTRERIRQIEAKSLEKLR 316
>UNIPROTKB|P13445 [details] [associations]
symbol:rpoS "RNA polymerase, sigma S (sigma 38) factor"
species:83333 "Escherichia coli K-12" [GO:0006950 "response to
stress" evidence=IDA] [GO:0001123 "transcription initiation from
bacterial-type RNA polymerase promoter" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016987 "sigma factor activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 HOGENOM:HOG000270273
EMBL:U29579 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 EMBL:L07869 EMBL:D17549 eggNOG:COG0568 KO:K03087
TIGRFAMs:TIGR02394 EMBL:X16400 EMBL:D13548 EMBL:Z14969 PIR:A65055
RefSeq:NP_417221.1 RefSeq:YP_490950.1 ProteinModelPortal:P13445
SMR:P13445 DIP:DIP-10777N IntAct:P13445 MINT:MINT-1228474
PRIDE:P13445 EnsemblBacteria:EBESCT00000000907
EnsemblBacteria:EBESCT00000000908 EnsemblBacteria:EBESCT00000000909
EnsemblBacteria:EBESCT00000017671 GeneID:12933280 GeneID:947210
KEGG:ecj:Y75_p2679 KEGG:eco:b2741 PATRIC:32120886 EchoBASE:EB0505
EcoGene:EG10510 OMA:AARQVMI ProtClustDB:PRK05657
BioCyc:EcoCyc:RPOS-MONOMER BioCyc:ECOL316407:JW5437-MONOMER
BioCyc:MetaCyc:RPOS-MONOMER Genevestigator:P13445 Uniprot:P13445
Length = 330
Score = 233 (87.1 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 69/243 (28%), Positives = 126/243 (51%)
Query: 266 KKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPK 325
++ L A+R ++I+ NLRLV+ + ++Y G DL + G GLI A+++F+P+
Sbjct: 81 RRALRGDVASRRRMIESNLRLVVKIARRYGN---RGLALLDLIEEGNLGLIRAVEKFDPE 137
Query: 326 RRFRLSTYGLFWIRHAIIRSMTVSSFT-RVPFGLESTSIMQVRGEIQRAKLELLFELKRV 384
R FR STY +WIR I R++ + T R+P + + ++ ++ A+ EL +L
Sbjct: 138 RGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHI----VKELNVYLRTAR-ELSHKLDHE 192
Query: 385 PTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVEN--ENQRQ 442
P+ EEI + ++ + +++ ++ I S+ + G E+ + I D EN E+ Q
Sbjct: 193 PSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDIL-ADEKENGPEDTTQ 251
Query: 443 PAXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLM 502
K+ V+ +RFGL G TL ++ + ++RE VR+ +V+GL
Sbjct: 252 DDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLR 311
Query: 503 KLK 505
+L+
Sbjct: 312 RLR 314
Score = 39 (18.8 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 247 REPTDVELAEATNMSAAQVKKCLE 270
+EP+D +LAE +S ++ L+
Sbjct: 33 QEPSDNDLAEEELLSQGATQRVLD 56
>UNIPROTKB|O48655 [details] [associations]
symbol:rsigA "Plastid RNA polymerase sigma factor"
species:39947 "Oryza sativa Japonica Group" [GO:0009416 "response
to light stimulus" evidence=IEP] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 GO:GO:0009507 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009416
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HSSP:Q9EZJ8 EMBL:AB005290 ProteinModelPortal:O48655 STRING:O48655
KEGG:dosa:Os08t0163400-01 Gramene:O48655 Uniprot:O48655
Length = 519
Score = 249 (92.7 bits), Expect = 2.6e-18, P = 2.6e-18
Identities = 86/283 (30%), Positives = 136/283 (48%)
Query: 236 QVKEQLQKDLGREPTDVELAEATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYF 295
Q + +L++ LG EP+ +LA + +S +++ + AR L NLRLV+ + +KY
Sbjct: 237 QQRSKLKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKY- 295
Query: 296 QDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFT-RV 354
D G DL Q G+ GL+ I++F+ R FR+STY +WIR + R++ +S T R+
Sbjct: 296 -DNL-GVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKTFRL 353
Query: 355 PFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSL 414
P L ++ +RG AK EL + PT E I +NIS ++ +A +LSL
Sbjct: 354 PTYLHER-LIAIRG----AKYELE-DQGIAPTIENIAGSLNISEKKVLNATEAVNKVLSL 407
Query: 415 H-----SRHGVTQEEFINGITDVDGVENE---NQRQPAXXXXXXXXXXXXXKPKESLVIR 466
S +G+ E + I D V N+ + +E +IR
Sbjct: 408 DQQAFPSLNGLPGETLHSYIED-QNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIR 466
Query: 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTR 509
G+ GK T +I+ +SRE VR+ + + KLKH R
Sbjct: 467 LYHGI-GKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAAR 508
>TIGR_CMR|CPS_1079 [details] [associations]
symbol:CPS_1079 "RNA polymerase sigma factor RpoS"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:CP000083 GenomeReviews:CP000083_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03087 TIGRFAMs:TIGR02394
OMA:KWLDELN RefSeq:YP_267823.1 ProteinModelPortal:Q487E2 SMR:Q487E2
STRING:Q487E2 GeneID:3519032 KEGG:cps:CPS_1079 PATRIC:21465429
BioCyc:CPSY167879:GI48-1161-MONOMER Uniprot:Q487E2
Length = 296
Score = 228 (85.3 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 76/291 (26%), Positives = 142/291 (48%)
Query: 224 LFKLMQPMKVFVQVKEQLQKDLGREPTDVELAE---ATNMSAAQV----KKCLEVGRAAR 276
+ KL + K ++ KE +L + T + L+E + ++A + + L+ +R
Sbjct: 1 MVKLKEQKKT-IESKEDAPSNL--DATQIYLSEIGFSPLLTAEEEVYFSRLALKGDEPSR 57
Query: 277 NKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLF 336
++I+ NLRLV+ + ++Y G DL + G GLI A+++F+P+R FR STY +
Sbjct: 58 KRMIESNLRLVVKIARRYNN---RGLPLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 114
Query: 337 WIRHAIIRSMTVSSFT-RVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEIIQGVN 395
WIR I R++ + T R+P +++ RA EL+ +L PT E+I Q ++
Sbjct: 115 WIRQTIERAIMNQTRTIRLPI-----HVVKELNIYLRASRELIQKLDHEPTAEDIAQHLD 169
Query: 396 ISPERYREVMKASKPILSLHSRH-GVTQEEFINGITDVDGVENENQRQPAXXXXXXXXXX 454
++++ ++ I S+ + G + + ++ I D E+ Q
Sbjct: 170 RPVADVNKMLRLNERIASVDTPFAGESDKALLDVIADEKSTGPESDLQSEDMSNNIIHWL 229
Query: 455 XXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 505
K+ V+ +RFGL G TL + + ++RE VR+ +V+ L +L+
Sbjct: 230 NELNTKQREVLARRFGLLGYEASTLENVGREIGLTRERVRQIQVEALKRLR 280
>TIGR_CMR|NSE_0312 [details] [associations]
symbol:NSE_0312 "RNA polymerase sigma factor RpoD"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 RefSeq:YP_506202.1
ProteinModelPortal:Q2GE94 SMR:Q2GE94 STRING:Q2GE94 GeneID:3931706
KEGG:nse:NSE_0312 PATRIC:22680715 OMA:HIHETAN
ProtClustDB:CLSK2527840 BioCyc:NSEN222891:GHFU-338-MONOMER
Uniprot:Q2GE94
Length = 620
Score = 228 (85.3 bits), Expect = 8.8e-18, Sum P(2) = 8.8e-18
Identities = 67/213 (31%), Positives = 109/213 (51%)
Query: 269 LEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRF 328
L+ AA++++++ NLRLV+ + KKY G F DL Q G GL+ A+D+F+ +R
Sbjct: 355 LDNANAAKHRMVEANLRLVISIAKKYTN---RGMPFPDLIQEGNIGLMKAVDKFDHRRGH 411
Query: 329 RLSTYGLFWIRHAIIRSMT-VSSFTRVPFGLESTSIMQVRGEIQRAKLELLFELK-RVPT 386
+ STY +W R AI R++ S R P + T+ ++ R + L + L R PT
Sbjct: 412 KFSTYATWWCRQAITRAIADCGSIVRKPVHIHETA-----NKVMRTRRRL-YNLNGREPT 465
Query: 387 DEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQE-----EFI---NGITDVDGVENE 438
EEI + ISP++ ++ +K ++ +SL S G +FI N ++ VD V ++
Sbjct: 466 VEEIANLLKISPDKVKKSLKVNQDPISLESPVGDDSNSGSFGDFIEDKNAVSQVDVVLSK 525
Query: 439 NQRQPAXXXXXXXXXXXXXKPKESLVIRQRFGL 471
N R+ P+E ++R RFGL
Sbjct: 526 NLRK------VLDEALAMLSPREEKILRYRFGL 552
Score = 63 (27.2 bits), Expect = 8.8e-18, Sum P(2) = 8.8e-18
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 478 TLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYLR 514
TL ++ N++RE +R+ E K L K++ P+R LR
Sbjct: 579 TLEQVGILYNVTRERIRQIESKSLRKMRSPSRSIKLR 615
>TAIR|locus:2173249 [details] [associations]
symbol:SIG4 "AT5G13730" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=TAS] [GO:0016987 "sigma factor activity" evidence=ISS]
[GO:0071482 "cellular response to light stimulus" evidence=IEP]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:2001141 "regulation of RNA biosynthetic process" evidence=IMP]
[GO:0000023 "maltose metabolic process" evidence=RCA] [GO:0006098
"pentose-phosphate shunt" evidence=RCA] [GO:0016556 "mRNA
modification" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 EMBL:CP002688
GO:GO:0009507 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AB006704 GO:GO:0071482
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HSSP:Q9EZJ8 GO:GO:0001053 EMBL:AF101075 EMBL:AB021119 EMBL:AY059907
EMBL:AY114689 IPI:IPI00548771 PIR:T51715 RefSeq:NP_196877.1
UniGene:At.43777 UniGene:At.49018 ProteinModelPortal:Q9ZSL6
SMR:Q9ZSL6 STRING:Q9ZSL6 PRIDE:Q9ZSL6 EnsemblPlants:AT5G13730.1
GeneID:831218 KEGG:ath:AT5G13730 GeneFarm:27 TAIR:At5g13730
InParanoid:Q9ZSL6 OMA:PENMVKR PhylomeDB:Q9ZSL6
ProtClustDB:CLSN2687040 Genevestigator:Q9ZSL6 Uniprot:Q9ZSL6
Length = 419
Score = 234 (87.4 bits), Expect = 6.2e-17, P = 6.2e-17
Identities = 87/312 (27%), Positives = 154/312 (49%)
Query: 214 PVLSSTEHTWLFKLMQPMKVFVQVKEQLQ-KDLG-----REPTDVELAEATNMSAAQVKK 267
PV+ ++ +L +L + +++ + +KE + ++LG E V LA +
Sbjct: 113 PVVGASRSGFLSRL-EEVQLCLYLKEGAKLENLGTSVEENEMVSVLLASGRGKKKRSANE 171
Query: 268 CLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRR 327
L + AR K+ + RLV+ + Y Q G QDL Q G GL+ +RF+P R
Sbjct: 172 ILCRRKEAREKITRCYRRLVVSIATGY-Q--GKGLNLQDLIQEGSIGLLRGAERFDPDRG 228
Query: 328 FRLSTYGLFWIRHAIIRSMTVSS-FTRVPFGLESTSIMQVRGEIQRAKLELLFELKRVPT 386
++LSTY +WI+ AI+R++ S ++P G S+ ++ ++ A L +L+R P+
Sbjct: 229 YKLSTYVYWWIKQAILRAIAHKSRLVKLP-G----SMWELTAKVAEASNVLTRKLRRQPS 283
Query: 387 DEEIIQGVNISPERYREVMKASKPILSLH---SRHG-VTQEEFINGITDVDGVENENQRQ 442
EEI + +N++ R ++ S+ +SL S++G +T +E + G D E +R+
Sbjct: 284 CEEIAEHLNLNVSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRG-PDETRPEEMVKRE 342
Query: 443 PAXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLM 502
+ ES V+ FGL+G+ + EI +L +SRE VR+ L
Sbjct: 343 HMKHEIEQLLGSLTAR--ESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALK 400
Query: 503 KLKHPTRVDYLR 514
KL++ V+ L+
Sbjct: 401 KLRNVHNVNDLK 412
>TAIR|locus:2084420 [details] [associations]
symbol:SIGC "AT3G53920" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS;IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0019685 "photosynthesis, dark reaction"
evidence=NAS] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IDA;TAS] [GO:0071482 "cellular response to light stimulus"
evidence=IEP] [GO:0001053 "plastid sigma factor activity"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0009507 EMBL:CP002686 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AL132960 GO:GO:0003899 GO:GO:0071482 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 HSSP:Q9EZJ8
GO:GO:0001053 InterPro:IPR016262 PIRSF:PIRSF000767 EMBL:D89994
EMBL:AB019944 EMBL:AB004822 EMBL:AF015544 EMBL:BT030362
EMBL:AY128331 IPI:IPI00530485 PIR:T45932 RefSeq:NP_190960.1
UniGene:At.21270 ProteinModelPortal:O24621 SMR:O24621 STRING:O24621
PRIDE:O24621 EnsemblPlants:AT3G53920.1 GeneID:824559
KEGG:ath:AT3G53920 GeneFarm:26 TAIR:At3g53920 InParanoid:O24621
KO:K03093 OMA:WIRKSMS PhylomeDB:O24621 ProtClustDB:CLSN2685061
Genevestigator:O24621 Uniprot:O24621
Length = 571
Score = 222 (83.2 bits), Expect = 5.5e-16, Sum P(2) = 5.5e-16
Identities = 82/307 (26%), Positives = 147/307 (47%)
Query: 217 SSTEHTWLFKLMQPMKVFVQVKEQLQKDLGREPTDVELAEATNMSAAQVKKCLEVGRAAR 276
+ TE + K++ M+ +++ QL+++ G+ + A A M+ + + L G R
Sbjct: 277 NETEMSTGVKIVADME---RIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCR 333
Query: 277 NKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLF 336
++L+K LVLF+ + Y G +DL QAG G++ +RF+ R ++ STY +
Sbjct: 334 DELVKSTRSLVLFLARNYR---GLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQY 390
Query: 337 WIRHAIIRSMTVSSFTRVPFGLE-STSIMQVRGEIQRAK--LELLFELKRVPTDEEIIQG 393
WIR ++ S VS R G+ +SI++ IQ+A+ L+ +K DEEI +
Sbjct: 391 WIRKSM--STMVSRHAR---GVHIPSSIIRTINHIQKARKTLKTSHGIKYA-ADEEIAKL 444
Query: 394 VNISPERYREVMKASKPILSLHSRHG-VTQEEFINGITD--VDGVENENQRQPAXXXXXX 450
S ++ R + K + S+ + G +F+ D ++ E RQ A
Sbjct: 445 TGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHD 504
Query: 451 XXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRV 510
+P+E V+ R+GL ++L EI L +S+E +RK E + + KL+
Sbjct: 505 LLEGL--EPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNA 562
Query: 511 DYLRQHM 517
+ LR ++
Sbjct: 563 EDLRYYL 569
Score = 51 (23.0 bits), Expect = 5.5e-16, Sum P(2) = 5.5e-16
Identities = 18/76 (23%), Positives = 35/76 (46%)
Query: 6 ISSSPARSPIGLSTISHRSTSKRPLIVAFKADKSNNQ-ALFSPQEQIPLP-IETPKRHQK 63
+ ++P + S + ++R + A D+S+ L + I +P + P +++K
Sbjct: 210 VDTTPNQQVFVSSRRKVKKKARRSSVTAENGDQSSLPIGLRTTWNNIDVPRVRRPPKYRK 269
Query: 64 RREN-SRKRLERVKGV 78
+RE SR E GV
Sbjct: 270 KRERISRNETEMSTGV 285
>TIGR_CMR|CBU_1669 [details] [associations]
symbol:CBU_1669 "RNA polymerase sigma factor RpoS"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE016828 GenomeReviews:AE016828_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 HSSP:P00579 EMBL:AF244357
RefSeq:NP_820651.1 ProteinModelPortal:Q9KI19 SMR:Q9KI19
PRIDE:Q9KI19 GeneID:1209580 KEGG:cbu:CBU_1669 PATRIC:17932081
KO:K03087 OMA:HISAQAT ProtClustDB:CLSK914949
BioCyc:CBUR227377:GJ7S-1641-MONOMER TIGRFAMs:TIGR02394
Uniprot:Q9KI19
Length = 352
Score = 221 (82.9 bits), Expect = 8.5e-16, P = 8.5e-16
Identities = 85/346 (24%), Positives = 151/346 (43%)
Query: 175 TKTRKTDSKDEHEKIEKLVREYSYSTDLVSLDWKKMKIPP---VLSSTEHTWLFKLMQPM 231
TKT K K +KI+K + T S K +K + + T+ K +
Sbjct: 3 TKTTKKTIKKAAKKIKKPSKRKIKKTAKKSRPKKPIKASDHGLIFAKTKKETTEKEDAEL 62
Query: 232 KVFVQVKEQLQKDLGREPTDVELAEATNMSAAQVKKCLEVGRA-------ARNKLIKHNL 284
++ ++ +PT + L E K+ L++ R AR ++I+ NL
Sbjct: 63 ANAKAKTKKRRETRSSDPTQIYLRELGFQPLLNAKEELKIARRVHKGDPKARKQMIEANL 122
Query: 285 RLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIR 344
RLV+ + + Y G F DL + G GL+TA+++F+P+R FR STY +WIR I R
Sbjct: 123 RLVVKIARHYVN---RGLPFLDLIEEGNLGLLTAVEKFDPERGFRFSTYATWWIRQTIER 179
Query: 345 S-MTVSSFTRVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYRE 403
+ M S R+P + I ++ ++ AK +L E+ T E++ ++ + R
Sbjct: 180 AIMNQSRTVRLPIHV----IKELNVYLRTAK-KLTQEVDHEATPEDVAHLIDKPVQEIRR 234
Query: 404 VMKASKPILSLH---SRHGVTQEEFINGITDVDGVENENQRQPAXXXXXXXXXXXXXKPK 460
+M + S+ S G Q+ ++ + D + ++ Q +
Sbjct: 235 IMDLAPSATSIDVPISEDG--QKSLVDTLADDNNIDPARLIQNVDLQDHIERWLAQLDER 292
Query: 461 ESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506
V+ RFGL TL + + ++RE VR+ ++ L +L+H
Sbjct: 293 HREVVILRFGLHENEKGTLEAVGKAVGLTRERVRQIQIDALQQLRH 338
>TIGR_CMR|CHY_1959 [details] [associations]
symbol:CHY_1959 "RNA polymerase sigma-F factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 KO:K03091
HOGENOM:HOG000270270 TIGRFAMs:TIGR02980 TIGRFAMs:TIGR02885
RefSeq:YP_360778.1 ProteinModelPortal:Q3AAQ6 STRING:Q3AAQ6
GeneID:3726621 KEGG:chy:CHY_1959 PATRIC:21277005 OMA:PRERYIL
ProtClustDB:CLSK941224 BioCyc:CHYD246194:GJCN-1958-MONOMER
Uniprot:Q3AAQ6
Length = 257
Score = 195 (73.7 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 74/261 (28%), Positives = 125/261 (47%)
Query: 250 TDVELAEATNMSAAQVKKCLEVGR----AARNKLIKHNLRLVLFVIKKYFQDFANGPRFQ 305
+ + L + ++K+ +E + AAR KLI NL+LV V++++ G +
Sbjct: 6 SSMNLPRFPRLGEQEIKELIEKAQKGDVAAREKLINCNLKLVFKVVERFLH---RGYEVE 62
Query: 306 DLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLESTSIMQ 365
DL Q G GLI AID+F+ K++ + STY + I I R + R+ ST +
Sbjct: 63 DLFQIGTIGLIKAIDKFDLKQQVKFSTYAVPMIVGEIRRFLRDDQAIRIS---RSTKELG 119
Query: 366 VRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEF 425
V+ I + K L +L R PT E+ + + S E E ++A + + SL V Q++
Sbjct: 120 VK--ILKEKEALTVKLGREPTIAELEETLGYSREAIVEALEAGQSLASLFET--VHQDDG 175
Query: 426 INGITDVDGVENE-NQRQPAXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAG 484
+ I +D ++ E ++ Q +P+E ++ RF + +T EIA
Sbjct: 176 -DPIYLLDQIKQEGDEEQTLLENISIKEVLSKLEPRERYILINRFFKE----KTQMEIAR 230
Query: 485 NLNISREMVRKHEVKGLMKLK 505
L IS+ V + E + L+KLK
Sbjct: 231 TLGISQVQVSRLERQALLKLK 251
>UNIPROTKB|O32728 [details] [associations]
symbol:O32728 "RNA polymerase sigma factor" species:1422
"Geobacillus stearothermophilus" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
TIGRFAMs:TIGR02980 EMBL:L47360 PDB:1L0O PDBsum:1L0O
ProteinModelPortal:O32728 SMR:O32728 IntAct:O32728
EvolutionaryTrace:O32728 TIGRFAMs:TIGR02885 Uniprot:O32728
Length = 250
Score = 173 (66.0 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 65/241 (26%), Positives = 113/241 (46%)
Query: 265 VKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEP 324
+++ E + AR+++I+ N+RLV V++++ G DL Q G GL+ ++D+F+
Sbjct: 21 IRRSQEGDQEARDEIIEKNMRLVWSVVQRFLN---RGYEADDLFQIGCIGLLKSVDKFDL 77
Query: 325 KRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLESTSIMQVRGEIQRAKLELLFELKRV 384
+ STY + I I R + +V S S+ ++ +I++AK EL R
Sbjct: 78 SYDVKFSTYAVPMIIGEIQRFLRDDGTVKV-----SRSLKEMGNKIRKAKDELSKTRGRS 132
Query: 385 PTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENENQRQPA 444
PT EI + ISPE +V+ A + + S H E + IT +D + + ++
Sbjct: 133 PTITEIADHLGISPE---DVVLAQEAVRLPTSIHETVYENDGDPITLLDQIADADEASWF 189
Query: 445 XXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKL 504
+ +E L++ R+ DRT E+A L IS+ V + E K L +
Sbjct: 190 DKIALKKAIEELDE-RERLIVYLRY----YRDRTQSEVASRLGISQVQVSRLEKKILQHI 244
Query: 505 K 505
K
Sbjct: 245 K 245
>TIGR_CMR|BA_4294 [details] [associations]
symbol:BA_4294 "RNA polymerase sigma-F factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03091 HOGENOM:HOG000270270 TIGRFAMs:TIGR02980
TIGRFAMs:TIGR02885 RefSeq:NP_846527.1 RefSeq:YP_020937.1
RefSeq:YP_030233.1 HSSP:O32728 ProteinModelPortal:Q81MF5 SMR:Q81MF5
DNASU:1088482 EnsemblBacteria:EBBACT00000012570
EnsemblBacteria:EBBACT00000017412 EnsemblBacteria:EBBACT00000022371
GeneID:1088482 GeneID:2818699 GeneID:2850307 KEGG:ban:BA_4294
KEGG:bar:GBAA_4294 KEGG:bat:BAS3983 OMA:IRRSQEG
ProtClustDB:PRK05572 BioCyc:BANT260799:GJAJ-4040-MONOMER
BioCyc:BANT261594:GJ7F-4178-MONOMER Uniprot:Q81MF5
Length = 252
Score = 170 (64.9 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 61/249 (24%), Positives = 118/249 (47%)
Query: 263 AQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRF 322
A ++K + + AR+ +++ N+RLV V++++ G DL Q G GL+ ++D+F
Sbjct: 21 ALIQKSQDGDQQARDTIVQSNMRLVWSVVQRFLN---RGYEPDDLFQIGCIGLLKSVDKF 77
Query: 323 EPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLESTSIMQVRGEIQRAKLELLFELK 382
+ + STY + I I R + +V S S+ + +I++ + EL E
Sbjct: 78 DLSFDVKFSTYAVPMIIGEIQRFLRDDGSVKV-----SRSLKETGNKIRKMRDELSKEFG 132
Query: 383 RVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENENQRQ 442
R PT E+ + + ++PE +AS+ S+H E + IT +D + ++++ +
Sbjct: 133 RAPTINEVAEALELTPEEVVLAQEASRAPSSIHE---TVYENDGDPITILDQIADQSETK 189
Query: 443 PAXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLM 502
+ +E L++ R+ D+T E+A + IS+ V + E K L
Sbjct: 190 WFDKIALKEAIRELDE-RERLIVYLRY----YKDQTQSEVAERIGISQVQVSRLEKKILK 244
Query: 503 KLKHPTRVD 511
++K R+D
Sbjct: 245 QMKD--RID 251
>TIGR_CMR|CHY_0617 [details] [associations]
symbol:CHY_0617 "RNA polymerase sigma-K factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014209 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 ProtClustDB:PRK05803
TIGRFAMs:TIGR02846 RefSeq:YP_359473.1 ProteinModelPortal:Q3AEG1
STRING:Q3AEG1 GeneID:3728237 KEGG:chy:CHY_0617 PATRIC:21274371
OMA:LERETEC BioCyc:CHYD246194:GJCN-617-MONOMER Uniprot:Q3AEG1
Length = 234
Score = 122 (48.0 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 31/92 (33%), Positives = 48/92 (52%)
Query: 262 AAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDR 321
A + + L+ R AR+ L + NLRLV ++KK F+ G +DL G GLI AID
Sbjct: 37 AYYIDRLLQGDREARDVLAERNLRLVAHIVKK-FE--GTGEATEDLISIGTIGLIKAIDT 93
Query: 322 FEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTR 353
F P + +L+TY + + I+ + + R
Sbjct: 94 FRPDKGTKLATYAAKCVENEILMHLRATKKNR 125
Score = 83 (34.3 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 459 PKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKL 504
P+E VI +RFGL +T EIA + ISR V + E + ++KL
Sbjct: 178 PRERKVIEERFGLSQTPRKTQREIAKKMGISRSYVSRIEKRAILKL 223
>TIGR_CMR|CHY_2055 [details] [associations]
symbol:CHY_2055 "RNA polymerase sigma-G factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014212 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 KO:K03091
HOGENOM:HOG000270270 TIGRFAMs:TIGR02980 RefSeq:YP_360874.1
ProteinModelPortal:Q3AAG0 STRING:Q3AAG0 GeneID:3726360
KEGG:chy:CHY_2055 PATRIC:21277191 OMA:QISDERN ProtClustDB:PRK08215
BioCyc:CHYD246194:GJCN-2054-MONOMER TIGRFAMs:TIGR02850
Uniprot:Q3AAG0
Length = 257
Score = 154 (59.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 71/255 (27%), Positives = 113/255 (44%)
Query: 253 ELAEATNMSAAQV-KKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAG 311
+L TN ++ K E AR KLI NLRLVL +I+++ G DL Q G
Sbjct: 15 KLPVLTNQEMKKLFLKVKEGDMEARQKLISGNLRLVLSIIQRFTN---RGEYVDDLFQVG 71
Query: 312 VKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLESTSIMQVRGEIQ 371
GLI AID F+ ++ + STY + I I R + ++ RV S S+ V +
Sbjct: 72 CIGLIKAIDNFDLEQNVKFSTYAVPMIIGEIRRYLRDNNPIRV-----SRSLRDVAYKAL 126
Query: 372 RAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITD 431
+ + L+ R PT EI Q + + E + A + +SL + Q+ + I
Sbjct: 127 QVRDNLVGRFSREPTVSEIAQELKVPQEEVVFALDAIQDPVSLFEP--IYQDGG-DPIFV 183
Query: 432 VDGVENE-NQRQPAXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISR 490
+D +++E N +E L+++ RF +GK T E+A + IS+
Sbjct: 184 MDQIKDEKNTDHNWLQGIALKEALERLNERERLILKLRF-YEGK---TQMEVAEEIGISQ 239
Query: 491 EMVRKHEVKGLMKLK 505
V + E L L+
Sbjct: 240 AQVSRLEKAALNHLR 254
>TIGR_CMR|BA_4043 [details] [associations]
symbol:BA_4043 "RNA polymerase sigma-29 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014200 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 RefSeq:NP_846283.1
RefSeq:YP_020685.1 RefSeq:YP_030006.1 ProteinModelPortal:P62177
DNASU:1086623 EnsemblBacteria:EBBACT00000012093
EnsemblBacteria:EBBACT00000017203 EnsemblBacteria:EBBACT00000022798
GeneID:1086623 GeneID:2816772 GeneID:2850034 KEGG:ban:BA_4043
KEGG:bar:GBAA_4043 KEGG:bat:BAS3755 OMA:LIMELRF
ProtClustDB:PRK08301 BioCyc:BANT260799:GJAJ-3813-MONOMER
BioCyc:BANT261594:GJ7F-3931-MONOMER TIGRFAMs:TIGR02835
Uniprot:P62177
Length = 239
Score = 123 (48.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 27/71 (38%), Positives = 46/71 (64%)
Query: 273 RAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLST 332
+AAR+ LI+ NLRLV+++ +K F++ G +DL G GLI A++ F P+++ +L+T
Sbjct: 56 QAARSLLIERNLRLVVYIARK-FEN--TGINIEDLISIGTIGLIKAVNTFNPEKKIKLAT 112
Query: 333 YGLFWIRHAII 343
Y I + I+
Sbjct: 113 YASRCIENEIL 123
Score = 62 (26.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 460 KESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 505
+E ++ RFGL G ++T ++A L IS+ + + E + + +L+
Sbjct: 187 REKQIMELRFGLAGGEEKTQKDVADMLGISQSYISRLEKRIIKRLR 232
>TIGR_CMR|SPO_0406 [details] [associations]
symbol:SPO_0406 "RNA polymerase sigma-32 factor"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0009408 "response to
heat" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_165669.1
ProteinModelPortal:Q5LWD6 GeneID:3196326 KEGG:sil:SPO0406
PATRIC:23374073 OMA:GREWIEA ProtClustDB:PRK07500 Uniprot:Q5LWD6
Length = 292
Score = 147 (56.8 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 68/277 (24%), Positives = 121/277 (43%)
Query: 243 KDLGREPTDVELAEA-TNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANG 301
K + R+ EL +A T ++ A + AA ++LI +RL + + K F+ + G
Sbjct: 9 KRMSRQAMKAELLDAETELALAYAWRDHR-DEAALHRLITAYMRLAISMAAK-FKRY--G 64
Query: 302 PRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLEST 361
DL Q GL+ A D+F+P R R STY ++WI+ A I+ + +++ V G S+
Sbjct: 65 APMNDLIQEAGLGLMKAADKFDPDRGVRFSTYAVWWIK-ASIQDYVMRNWSMVRTGSTSS 123
Query: 362 ------SIMQVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKA--SKPILS 413
++ +V+ ++R L R + I + + P R E+M+ S S
Sbjct: 124 QKSLFFNMRRVQARLEREAATDGLALDRHQLHQMIASEIGV-PLRDVEMMEGRLSGSDFS 182
Query: 414 LHSRHGVTQE--EFINGITDVDGVENE---NQRQPAXXXXXXXXXXXXXKPKESLVIRQR 468
L++ +E E+I + D E ++ +E ++R+R
Sbjct: 183 LNATQASDEEGREWIEALEDESEQAAELVAHRHDTEQLRDWLIEAMQALNERERFIVRER 242
Query: 469 FGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 505
D RTL + L +S+E VR+ E K++
Sbjct: 243 KLRDEP--RTLESLGDELGLSKERVRQLEAAAFAKMR 277
>TIGR_CMR|BA_4042 [details] [associations]
symbol:BA_4042 "RNA polymerase sigma-G factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014212 InterPro:IPR014284 InterPro:IPR014322
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03091 HSSP:P00579 HOGENOM:HOG000270270 TIGRFAMs:TIGR02980
OMA:QISDERN ProtClustDB:PRK08215 TIGRFAMs:TIGR02850
RefSeq:NP_846282.1 RefSeq:YP_020684.2 ProteinModelPortal:Q81WD6
DNASU:1086511 EnsemblBacteria:EBBACT00000008607
EnsemblBacteria:EBBACT00000015378 GeneID:1086511 GeneID:2816830
KEGG:ban:BA_4042 KEGG:bar:GBAA_4042 PATRIC:18785676
BioCyc:BANT261594:GJ7F-3930-MONOMER Uniprot:Q81WD6
Length = 259
Score = 142 (55.0 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 62/236 (26%), Positives = 108/236 (45%)
Query: 274 AARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTY 333
+AR KL+ NLRLVL VI+++ G DL Q G GL+ +ID F+ + + STY
Sbjct: 37 SAREKLVNGNLRLVLSVIQRFNN---RGEYVDDLFQVGCIGLMKSIDNFDLGQNVKFSTY 93
Query: 334 GLFWIRHAIIRSMTVSSFTRVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEIIQG 393
+ I I R + ++ RV S S+ + + + + +L+ E + PT +I +
Sbjct: 94 AVPMIIGEIRRYLRDNNPIRV-----SRSLRDIAYKALQVREKLIAENSKEPTAMDIAKV 148
Query: 394 VNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENENQRQPA-XXXXXXXX 452
+ ++ E + A + +SL + + I +D + +E Q+
Sbjct: 149 LEVTHEEIVFALDAIQDPVSLFEP---IYNDGGDPIFVMDQLSDEKQKDEQWVEELALKE 205
Query: 453 XXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPT 508
+E ++IR+RF GK T E+A + IS+ V + E K +K + T
Sbjct: 206 GMKRLNDREKMIIRKRF-FQGK---TQMEVAEEIGISQAQVSRLE-KSAIKQMNKT 256
>TIGR_CMR|GSU_0655 [details] [associations]
symbol:GSU_0655 "RNA polymerase sigma-32 factor"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012759 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HOGENOM:HOG000270269 KO:K03089
TIGRFAMs:TIGR02392 RefSeq:NP_951712.1 ProteinModelPortal:Q74FF4
GeneID:2685542 KEGG:gsu:GSU0655 PATRIC:22024067 OMA:DIVSARW
ProtClustDB:CLSK827976 BioCyc:GSUL243231:GH27-665-MONOMER
Uniprot:Q74FF4
Length = 284
Score = 141 (54.7 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 65/245 (26%), Positives = 107/245 (43%)
Query: 275 ARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYG 334
A + LI NLR V+ + +Y + + G + DL Q G GL+ A+ +F P + RL +Y
Sbjct: 45 AAHSLITSNLRFVVKIAAEY-RSY--GLKMLDLIQEGNVGLMMAVRKFNPYKGIRLISYA 101
Query: 335 LFWIRHAIIRSMTVSSFTRVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEIIQGV 394
++WIR A I++ +S++ S++++ G Q K +L F+L + + + G
Sbjct: 102 VWWIR-AYIQNHIISAW----------SLLKI-GTTQAQK-KLFFKLNQAKNAIKGLTGT 148
Query: 395 NISPERYREVMKASKPILSLHSR-HG--VTQEEFING--ITDVDGVENENQRQPAXXXXX 449
+ + +L + R G E NG +T ++ + +E Q Q
Sbjct: 149 DDIEATATSLHVKESEVLEMDQRMRGDFYLDAEIKNGDGLTILETLADERQNQEDTLAEL 208
Query: 450 XXX---------XXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500
KE ++ QR D TL EIA +ISRE VR+ E
Sbjct: 209 QESELLKQHIAGALGKLNEKERFIVEQRVTADTP--LTLQEIADRFSISRERVRQIEEAA 266
Query: 501 LMKLK 505
L K+K
Sbjct: 267 LRKIK 271
>UNIPROTKB|O83707 [details] [associations]
symbol:TP_0709 "RNA polymerase sigma factor" species:243276
"Treponema pallidum subsp. pallidum str. Nichols" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR012845 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
GO:GO:0003899 EMBL:AE000520 GenomeReviews:AE000520_GR
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 KO:K02405
OMA:TYAITRI TIGRFAMs:TIGR02479 HSSP:Q9EZJ8 PIR:A71290
RefSeq:NP_219146.1 ProteinModelPortal:O83707 IntAct:O83707
MINT:MINT-6480056 GeneID:2610969 KEGG:tpa:TP0709 PATRIC:20531509
ProtClustDB:PRK06288 Uniprot:O83707
Length = 262
Score = 140 (54.3 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 45/145 (31%), Positives = 70/145 (48%)
Query: 286 LVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRS 345
LV +V K F DL G+ GL AID+++P++ R +TY + IR AI
Sbjct: 37 LVKYVASKIAVGKPGNVEFDDLVSYGIFGLFDAIDKYDPEKNIRFNTYAVTRIRGAIFDE 96
Query: 346 MTVSSFTRVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVM 405
+ S VP S+ Q +I+ A +L L R TD EI +NI E Y +++
Sbjct: 97 LR--SIDWVP-----RSVRQQTRQIEEAIADLEARLGRXATDTEIACALNIELEEYHQLL 149
Query: 406 -KAS-KPILSL-HSRHGVTQEEFIN 427
K S ++SL S+ G + + ++
Sbjct: 150 LKVSGTSVISLADSKFGGDERDHVS 174
>TIGR_CMR|SPO_1409 [details] [associations]
symbol:SPO_1409 "RNA polymerase sigma-32 factor"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0009408 "response to
heat" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012759
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00716 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 GO:GO:0008270 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 RefSeq:YP_166650.1 ProteinModelPortal:Q5LTK5
GeneID:3195142 KEGG:sil:SPO1409 PATRIC:23376133 OMA:HESQEEM
Uniprot:Q5LTK5
Length = 298
Score = 140 (54.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 61/243 (25%), Positives = 116/243 (47%)
Query: 277 NKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLF 336
+K++ +LRL + Y + + P+ + + +A V GL+ A+ RF+P++ FRL+TY ++
Sbjct: 51 HKMVTSHLRLAAKIAMGY-RGYGL-PQAEVISEANV-GLMQAVKRFDPEKGFRLATYAMW 107
Query: 337 WIRHAIIRSMTVSSFTRVPFGLESTSIMQVRGEIQRAKLEL--LFELKRVPTD-EEIIQG 393
WIR A I+ + S++ V G S ++ +++AK ++ L E P + I
Sbjct: 108 WIR-AAIQEYILRSWSLVKLGTTSAQ-KKLFFNLRKAKAKIGALEEGDLRPENVARIAHD 165
Query: 394 VNISPERYREV-MKASKPILSLHSRHGVTQE---EFINGITDVDG---VENENQRQPAXX 446
+ +S + + + S SL++ G E ++ + + D D + E + +
Sbjct: 166 LGVSEDDVISMNRRMSGGDASLNATVGSEGEGTMQWQDWLEDEDADQAADYEARDELEAR 225
Query: 447 XXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506
+E V+ QR LD TL +++ N+SRE +R+ EV+ KL+
Sbjct: 226 RELLASALDVLNEREKDVLTQRRLLDQTV--TLEDLSAQYNVSRERIRQIEVRAFEKLQK 283
Query: 507 PTR 509
R
Sbjct: 284 RMR 286
>TIGR_CMR|BA_4566 [details] [associations]
symbol:BA_4566 "RNA polymerase sigma-27 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014209 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
RefSeq:NP_846788.1 RefSeq:YP_021211.1 RefSeq:YP_030484.1
ProteinModelPortal:P62182 DNASU:1088335
EnsemblBacteria:EBBACT00000010179 EnsemblBacteria:EBBACT00000016313
EnsemblBacteria:EBBACT00000019367 GeneID:1088335 GeneID:2818972
GeneID:2852916 KEGG:ban:BA_4566 KEGG:bar:GBAA_4566 KEGG:bat:BAS4236
HOGENOM:HOG000270274 KO:K03091 OMA:WWIRESI ProtClustDB:PRK05803
BioCyc:BANT260799:GJAJ-4292-MONOMER
BioCyc:BANT261594:GJ7F-4441-MONOMER TIGRFAMs:TIGR02846
Uniprot:P62182
Length = 237
Score = 133 (51.9 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 44/145 (30%), Positives = 76/145 (52%)
Query: 269 LEVGRA-ARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRR 327
+E G A ARN LI+HNLRLV ++KK F++ G +DL G GLI AI+ + +
Sbjct: 42 MEQGDAQARNLLIEHNLRLVAHIVKK-FEN--TGEDAEDLISIGTIGLIKAIESYSAGKG 98
Query: 328 FRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLESTSIMQVRG------EIQRAKLELLFEL 381
+L+TY I + I+ + V T+ L G +I +++ E + ++
Sbjct: 99 TKLATYAARCIENEILMHLRVLKKTKKDVSLHDPIGQDKEGNEISLIDILKSESEDVIDM 158
Query: 382 KRVPTD-EEIIQGVNISPERYREVM 405
++ + E+I + ++I ER +EV+
Sbjct: 159 IQLSMELEKIKEYIDILDEREKEVI 183
>TIGR_CMR|ECH_0655 [details] [associations]
symbol:ECH_0655 "RNA polymerase sigma-32 factor"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_507464.1
ProteinModelPortal:Q2GGG9 STRING:Q2GGG9 GeneID:3928045
KEGG:ech:ECH_0655 PATRIC:20576762 OMA:HHLVTSH
ProtClustDB:CLSK749586 BioCyc:ECHA205920:GJNR-657-MONOMER
Uniprot:Q2GGG9
Length = 297
Score = 130 (50.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 57/247 (23%), Positives = 116/247 (46%)
Query: 274 AARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTY 333
A ++L+ +LRLV+ V F+++ P + + + + GL+ A+ +F P FRLSTY
Sbjct: 46 ADAHRLVTSHLRLVVKVALS-FKNYEL-PLIELIMEGNI-GLMQAVKKFNPTLGFRLSTY 102
Query: 334 GLFWIRHAIIRSMTVSSFTRVPFGLEST------SIMQVRGEIQR-----AKLELLFELK 382
++WI+ A I+ + S++ + G S+ +++ ++ + K ++
Sbjct: 103 AIWWIK-AFIKDYILKSWSCIKIGTTQAQRKLFFSLRKIKKKLFKYNHNITKEDIKLIAN 161
Query: 383 RVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENE---N 439
+ T E+ ++ +N YR+ ++ + S +++GV +E I D E+ N
Sbjct: 162 KCSTSEQEVEQMN-RYFLYRD-RSLNELVFSNDNQNGVELQEIIK--CDTPNQEDTYLLN 217
Query: 440 QRQPAXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499
+ + + IR+R L + D TL +++ NIS+E VR+ E+
Sbjct: 218 EELNIKKALISQALSTLNERYRDIFIRRR--LIEEPD-TLDKLSQEYNISKERVRQIEMH 274
Query: 500 GLMKLKH 506
K+K+
Sbjct: 275 AFTKVKN 281
>TIGR_CMR|CHY_2056 [details] [associations]
symbol:CHY_2056 "RNA polymerase sigma-E factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014200 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 ProtClustDB:PRK08301
TIGRFAMs:TIGR02835 RefSeq:YP_360875.1 ProteinModelPortal:Q3AAF9
STRING:Q3AAF9 GeneID:3727807 KEGG:chy:CHY_2056 PATRIC:21277193
OMA:ERQETTI BioCyc:CHYD246194:GJCN-2055-MONOMER Uniprot:Q3AAF9
Length = 237
Score = 126 (49.4 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 48/171 (28%), Positives = 87/171 (50%)
Query: 274 AARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTY 333
AA++ LI+ NLRLV+++ +K F++ G +DL G GLI A++ F P+++ +L+TY
Sbjct: 55 AAKSTLIERNLRLVVYIARK-FEN--TGVNIEDLVSIGTIGLIKAVNTFNPEKKIKLATY 111
Query: 334 GLFWIRHAIIRSMTVSSFTRVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEIIQG 393
I + I+ + +S R+ + + G ELL + T+ +II
Sbjct: 112 ASRCIENEILMYLRRNSKIRLEVSFDEPLNVDWDGN------ELLLS-DVLGTEGDIIYK 164
Query: 394 VNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENENQRQPA 444
V + E ++++K + L+ R + + F G+TD G E Q++ A
Sbjct: 165 V-MEDEVEKKLLKVALSKLNQRERK-IMELRF--GLTD--GYER-TQKEVA 208
Score = 37 (18.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 212 IPPVLSSTEHTWLFKLM 228
+PP LSS E L L+
Sbjct: 33 LPPPLSSEEENTLLTLL 49
>TIGR_CMR|SO_4583 [details] [associations]
symbol:SO_4583 "RNA polymerase sigma-32 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HOGENOM:HOG000270269 KO:K03089
ProtClustDB:PRK06596 TIGRFAMs:TIGR02392 HSSP:Q9EZJ8 OMA:EIAYAER
RefSeq:NP_720099.1 ProteinModelPortal:Q8E8S8 GeneID:1172168
KEGG:son:SO_4583 PATRIC:23528833 Uniprot:Q8E8S8
Length = 285
Score = 127 (49.8 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 66/250 (26%), Positives = 106/250 (42%)
Query: 266 KKCLEVG--RAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFE 323
K+ E G +AA+ ++ H LR V+ V K Y G DL Q G GL+ A+ RF+
Sbjct: 42 KRLQETGDLQAAKQLIMSH-LRFVVHVAKGYA---GYGLPQADLIQEGNIGLMKAVKRFD 97
Query: 324 PKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLESTSIMQVRGEIQRAKLEL-LFELK 382
P RL ++ + WI+ A I + ++ V ++ I++AK L F
Sbjct: 98 PDVGVRLVSFAVHWIK-AEIHEYVLKNWRIVKVATTKAQ-RKLFFNIRKAKTRLGWFSDD 155
Query: 383 RVPTDEEIIQGVNISPERYREV-MKASKPILSLHS----RHGVTQEEFING-ITDV-DGV 435
V E + GV+ + E M A P L S H ++ +D+ + +
Sbjct: 156 EVTMVAENL-GVSKADVTEMESRMAAQDPAFDLSSDNDDEHDFAPVHYLEDHSSDLAENI 214
Query: 436 ENENQRQPAXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRK 495
EN+N A + + ++R R+ D K TL E+A +S E +R+
Sbjct: 215 ENDNWESNAQGRLLSAIKTLDERSQH--ILRARWLDDDK--TTLQELAETYQVSAERIRQ 270
Query: 496 HEVKGLMKLK 505
E + KLK
Sbjct: 271 LEKNAMNKLK 280
>TIGR_CMR|GSU_3053 [details] [associations]
symbol:GSU_3053 "RNA polymerase sigma factor for flagellar
operon" species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012845 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00716 GO:GO:0019861
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0016987 GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 HOGENOM:HOG000270271 KO:K02405 OMA:TYAITRI
TIGRFAMs:TIGR02479 RefSeq:NP_954095.1 ProteinModelPortal:Q748E9
GeneID:2686906 KEGG:gsu:GSU3053 PATRIC:22028957
ProtClustDB:CLSK829077 BioCyc:GSUL243231:GH27-2993-MONOMER
Uniprot:Q748E9
Length = 250
Score = 121 (47.7 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 55/236 (23%), Positives = 105/236 (44%)
Query: 276 RNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGL 335
R++LI ++L LV F++ + +DL A + GLITA +RF+P R + T+
Sbjct: 20 RDELIVNHLPLVKFLVGRIASQLPPHLDQEDLMSAAIIGLITAAERFDPTRGVQFKTFAE 79
Query: 336 FWIRHAIIRSMTVSSFTRVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEIIQGVN 395
IR II + + + S+ ++++ + L +L R PT EE+ +
Sbjct: 80 QRIRGTIIDELRSQDWL-------TRSLRDKFKKLEKEFVLLEHQLGRNPTSEEVATALK 132
Query: 396 ISPERYREVMKASKPILSLHSRHGVTQEEFIN--GITDV--D-GVENENQRQPAXXXXXX 450
+S + Y ++++ +LS S +++ + G+ D+ D +EN + A
Sbjct: 133 MSVDEYYQMLEEIH-LLSFVSLDESWEDDDGSPFGLLDILADTSIENPQSQLMARQMLDS 191
Query: 451 XXXXXXXKP-KESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 505
P KE LVI + + L EI L +S + + + +++L+
Sbjct: 192 LTESIESLPEKERLVITLYY----YEELNLKEIGAVLELSESRISQLHSQAIVRLR 243
>UNIPROTKB|P0AGB3 [details] [associations]
symbol:rpoH species:83333 "Escherichia coli K-12"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0016987 "sigma
factor activity" evidence=IEA;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;IMP] [GO:0009408
"response to heat" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006950 "response
to stress" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0006355
EMBL:U00039 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
EMBL:J05516 EMBL:M20668 EMBL:K02177 PIR:H65142 RefSeq:NP_417918.1
RefSeq:YP_491973.1 ProteinModelPortal:P0AGB3 SMR:P0AGB3
DIP:DIP-46203N IntAct:P0AGB3 PRIDE:P0AGB3 DNASU:947970
EnsemblBacteria:EBESCT00000004588 EnsemblBacteria:EBESCT00000004589
EnsemblBacteria:EBESCT00000004590 EnsemblBacteria:EBESCT00000004591
EnsemblBacteria:EBESCT00000004592 EnsemblBacteria:EBESCT00000004593
EnsemblBacteria:EBESCT00000018203 GeneID:12933503 GeneID:947970
KEGG:ecj:Y75_p3717 KEGG:eco:b3461 PATRIC:32122366 EchoBASE:EB0890
EcoGene:EG10897 eggNOG:COG0568 HOGENOM:HOG000270269 KO:K03089
OMA:LNNDEVH ProtClustDB:PRK06596 BioCyc:EcoCyc:RPOH-MONOMER
BioCyc:ECOL316407:JW3426-MONOMER BioCyc:MetaCyc:RPOH-MONOMER
Genevestigator:P0AGB3 TIGRFAMs:TIGR02392 Uniprot:P0AGB3
Length = 284
Score = 119 (46.9 bits), Expect = 0.00022, P = 0.00022
Identities = 58/243 (23%), Positives = 103/243 (42%)
Query: 274 AARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTY 333
AA+ ++ H LR V+ + + Y G DL Q G GL+ A+ RF P+ RL ++
Sbjct: 49 AAKTLILSH-LRFVVHIARNYA---GYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSF 104
Query: 334 GLFWIRHAIIRSMTVSSFTRVPFGLESTSIMQVRGEIQRAKLEL-LFELKRVPTDEEIIQ 392
+ WI+ A I + ++ V ++ +++ K L F V E + +
Sbjct: 105 AVHWIK-AEIHEYVLRNWRIVKVATTKAQ-RKLFFNLRKTKQRLGWFNQDEV---EMVAR 159
Query: 393 GVNISPERYREV---MKASKPILSLHSRHGVTQEEF--INGITD-----VDGVENENQRQ 442
+ ++ + RE+ M A L S + + + D DG+E++N +
Sbjct: 160 ELGVTSKDVREMESRMAAQDMTFDLSSDDDSDSQPMAPVLYLQDKSSNFADGIEDDNWEE 219
Query: 443 PAXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLM 502
A + ++ +IR R+ LD TL E+A +S E VR+ E +
Sbjct: 220 QAANRLTDAMQGLDERSQD--IIRARW-LDEDNKSTLQELADRYGVSAERVRQLEKNAMK 276
Query: 503 KLK 505
KL+
Sbjct: 277 KLR 279
>TIGR_CMR|NSE_0341 [details] [associations]
symbol:NSE_0341 "RNA polymerase sigma-32 factor"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_506230.1 STRING:Q2GE66
GeneID:3931426 KEGG:nse:NSE_0341 PATRIC:22680769 OMA:AINEYVI
ProtClustDB:CLSK2528041 BioCyc:NSEN222891:GHFU-366-MONOMER
Uniprot:Q2GE66
Length = 288
Score = 116 (45.9 bits), Expect = 0.00049, P = 0.00049
Identities = 57/252 (22%), Positives = 101/252 (40%)
Query: 274 AARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTY 333
+A +L++ LRLV+ V + F+++ G DL G GL+ AI F P ++TY
Sbjct: 45 SAAQRLVEAYLRLVVKVTVR-FRNY--GFPLMDLASEGNIGLMKAIKNFNPTLGHGIATY 101
Query: 334 GLFWIRHAIIRSMTVSSFTRVPFGLESTS---IMQVRGEIQRAKLELLFELKRVPTDEEI 390
++WI+ A I + S++ V G + +R + L E + V EI
Sbjct: 102 AIWWIK-AAINEYVIRSWSMVKIGTTAAQRRLFFNLRKLKNSGSVAGLDENQVVKRISEI 160
Query: 391 IQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENE------NQRQPA 444
+ E ++ A +SL+ + G ++ + E +RQ
Sbjct: 161 LAVSKNDVEEMERILNARD--VSLNMQLGEDDSSEVHDLVPFPEANQEAVLLETQERQMK 218
Query: 445 XXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKL 504
+ KE V R + RTL E+ +IS+E VR+ + + K+
Sbjct: 219 SQLLYEAVEALEARHKEIFVARSLSAVP----RTLKELGEKFSISQERVRQIHARAMKKV 274
Query: 505 KHPTRVDYLRQH 516
+Y+ +H
Sbjct: 275 -----TEYVEKH 281
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.371 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 518 493 0.00083 119 3 11 22 0.41 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 50
No. of states in DFA: 603 (64 KB)
Total size of DFA: 255 KB (2137 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 47.96u 0.12s 48.08t Elapsed: 00:00:02
Total cpu time: 47.97u 0.12s 48.09t Elapsed: 00:00:02
Start: Mon May 20 20:18:32 2013 End: Mon May 20 20:18:34 2013