Query 010092
Match_columns 518
No_of_seqs 363 out of 1790
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 19:43:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010092.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010092hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9z_H Sigma factor SIGA; heli 100.0 4.5E-53 1.5E-57 449.6 32.8 313 197-517 90-437 (438)
2 2a6h_F RNA polymerase sigma fa 100.0 3.5E-53 1.2E-57 450.4 24.9 313 197-517 75-422 (423)
3 3iyd_F RNA polymerase sigma fa 100.0 2.8E-41 9.6E-46 374.1 2.1 246 264-517 361-611 (613)
4 3ugo_A RNA polymerase sigma fa 100.0 5.1E-36 1.7E-40 297.1 15.7 210 197-414 3-245 (245)
5 1rp3_A RNA polymerase sigma fa 100.0 1.4E-30 4.9E-35 250.9 19.2 224 272-508 10-235 (239)
6 1l0o_C Sigma factor; bergerat 100.0 8.2E-31 2.8E-35 252.4 5.0 222 265-505 19-243 (243)
7 1or7_A Sigma-24, RNA polymeras 99.9 2.2E-21 7.4E-26 181.6 14.7 175 264-508 13-188 (194)
8 2q1z_A RPOE, ECF SIGE; ECF sig 99.8 8.6E-22 3E-26 183.1 7.9 165 264-507 16-182 (184)
9 3mzy_A RNA polymerase sigma-H 99.8 1.2E-19 4.1E-24 164.2 12.6 152 301-510 1-158 (164)
10 1sig_A Sigma70, RNA polymerase 99.6 1.1E-15 3.8E-20 157.3 11.6 81 264-347 252-335 (339)
11 2lfw_A PHYR sigma-like domain; 99.6 1.7E-17 5.9E-22 152.1 -2.5 141 276-510 3-143 (157)
12 3t72_q RNA polymerase sigma fa 99.5 2.9E-14 1E-18 122.2 9.1 77 441-517 4-80 (99)
13 3n0r_A Response regulator; sig 99.5 2.2E-14 7.5E-19 144.3 6.6 145 269-509 16-160 (286)
14 2p7v_B Sigma-70, RNA polymeras 99.3 2.2E-12 7.6E-17 102.1 6.5 65 453-517 2-66 (68)
15 1tty_A Sigma-A, RNA polymerase 99.3 5.2E-12 1.8E-16 105.0 8.8 70 448-517 10-79 (87)
16 1ku3_A Sigma factor SIGA; heli 99.3 1.3E-12 4.5E-17 104.9 4.5 68 450-517 4-72 (73)
17 3hug_A RNA polymerase sigma fa 99.2 8.9E-11 3E-15 98.3 9.2 73 434-510 15-87 (92)
18 2o8x_A Probable RNA polymerase 98.9 2.8E-09 9.5E-14 83.7 7.4 64 445-512 4-67 (70)
19 1h3l_A RNA polymerase sigma fa 98.7 1.1E-08 3.8E-13 83.7 5.8 75 268-347 6-80 (87)
20 1xsv_A Hypothetical UPF0122 pr 98.7 4.5E-08 1.5E-12 85.4 8.6 66 441-510 9-75 (113)
21 2o7g_A Probable RNA polymerase 98.7 3.8E-08 1.3E-12 84.3 7.8 77 265-347 15-91 (112)
22 2rnj_A Response regulator prot 98.6 3.2E-08 1.1E-12 82.5 4.7 64 444-512 17-80 (91)
23 1x3u_A Transcriptional regulat 98.6 1.2E-07 4.1E-12 76.2 7.5 61 448-513 8-68 (79)
24 3c57_A Two component transcrip 98.6 1E-07 3.5E-12 80.3 6.8 63 445-512 16-78 (95)
25 1s7o_A Hypothetical UPF0122 pr 98.5 2.3E-07 7.8E-12 81.0 7.5 61 446-510 11-72 (113)
26 1jhg_A Trp operon repressor; c 98.5 7.6E-08 2.6E-12 82.5 3.9 64 445-509 23-90 (101)
27 1je8_A Nitrate/nitrite respons 98.4 2.1E-07 7.3E-12 76.2 5.9 60 449-513 14-73 (82)
28 1fse_A GERE; helix-turn-helix 98.3 1E-06 3.4E-11 69.6 6.3 59 450-513 5-63 (74)
29 3clo_A Transcriptional regulat 98.1 5.5E-06 1.9E-10 81.5 7.6 159 264-513 87-249 (258)
30 3ulq_B Transcriptional regulat 98.0 1.4E-05 5E-10 66.6 7.4 55 453-512 26-80 (90)
31 2jpc_A SSRB; DNA binding prote 97.9 1.5E-05 5.1E-10 60.7 5.7 49 459-512 1-49 (61)
32 1p4w_A RCSB; solution structur 97.9 2.1E-05 7.1E-10 66.9 6.8 53 455-512 33-85 (99)
33 2q0o_A Probable transcriptiona 97.4 0.00031 1.1E-08 67.8 7.8 52 456-512 175-226 (236)
34 1l3l_A Transcriptional activat 97.3 0.00035 1.2E-08 67.4 7.6 52 456-512 173-224 (234)
35 3szt_A QCSR, quorum-sensing co 97.2 0.00048 1.6E-08 66.8 6.9 53 455-512 174-226 (237)
36 3qp6_A CVIR transcriptional re 97.1 0.00061 2.1E-08 67.4 6.9 51 456-511 197-247 (265)
37 1tc3_C Protein (TC3 transposas 96.8 0.0013 4.5E-08 46.6 4.7 40 456-499 5-44 (51)
38 1yio_A Response regulatory pro 96.7 0.006 2E-07 56.2 9.5 58 450-512 136-193 (208)
39 2w7n_A TRFB transcriptional re 96.6 0.0049 1.7E-07 52.6 7.0 46 456-505 18-63 (101)
40 2x48_A CAG38821; archeal virus 96.3 0.0023 8E-08 47.4 3.2 39 457-500 17-55 (55)
41 1a04_A Nitrate/nitrite respons 96.2 0.01 3.4E-07 55.1 7.6 52 455-511 153-204 (215)
42 3c3w_A Two component transcrip 95.8 0.015 5.3E-07 54.6 6.9 52 455-511 148-199 (225)
43 3klo_A Transcriptional regulat 95.2 0.022 7.7E-07 53.3 5.9 52 455-511 158-209 (225)
44 3p7n_A Sensor histidine kinase 95.2 0.068 2.3E-06 50.6 9.2 64 445-513 187-250 (258)
45 3iyd_F RNA polymerase sigma fa 94.8 0.008 2.7E-07 66.4 1.5 38 195-232 90-127 (613)
46 1jko_C HIN recombinase, DNA-in 92.8 0.079 2.7E-06 37.6 3.3 25 475-499 20-44 (52)
47 1p2f_A Response regulator; DRR 92.8 0.091 3.1E-06 48.7 4.6 51 456-507 145-198 (220)
48 2gwr_A DNA-binding response re 92.3 0.13 4.5E-06 48.4 5.1 51 456-507 153-208 (238)
49 2oqr_A Sensory transduction pr 91.9 0.12 4.1E-06 48.1 4.3 51 456-507 156-211 (230)
50 1qgp_A Protein (double strande 91.9 0.14 4.7E-06 41.1 3.9 42 459-500 14-55 (77)
51 1kgs_A DRRD, DNA binding respo 91.6 0.11 3.8E-06 48.0 3.6 52 456-508 151-207 (225)
52 1qbj_A Protein (double-strande 91.2 0.29 1E-05 39.7 5.3 40 460-499 11-50 (81)
53 3kor_A Possible Trp repressor; 91.1 0.18 6.1E-06 44.1 4.0 36 455-496 60-95 (119)
54 1ys7_A Transcriptional regulat 91.0 0.11 3.7E-06 48.4 2.9 51 456-507 159-214 (233)
55 1u78_A TC3 transposase, transp 90.8 0.24 8.3E-06 42.7 4.8 41 456-500 6-46 (141)
56 1pdn_C Protein (PRD paired); p 90.5 0.36 1.2E-05 40.5 5.5 42 456-501 17-58 (128)
57 3q9s_A DNA-binding response re 89.2 0.2 6.9E-06 47.9 3.2 54 456-510 182-240 (249)
58 3ugo_A RNA polymerase sigma fa 89.1 0.073 2.5E-06 52.0 0.0 50 450-504 192-243 (245)
59 1zx4_A P1 PARB, plasmid partit 89.0 0.43 1.5E-05 45.1 5.2 28 474-501 22-49 (192)
60 2hqr_A Putative transcriptiona 88.9 0.11 3.9E-06 48.1 1.1 51 456-507 143-198 (223)
61 1k78_A Paired box protein PAX5 88.6 0.57 1.9E-05 41.2 5.5 43 456-502 32-74 (149)
62 3r0a_A Putative transcriptiona 88.3 0.8 2.7E-05 39.5 6.1 45 453-499 20-65 (123)
63 1sfx_A Conserved hypothetical 88.2 1.1 3.6E-05 36.4 6.6 42 456-500 17-58 (109)
64 2dbb_A Putative HTH-type trans 87.4 1.1 3.6E-05 39.6 6.5 43 455-500 5-47 (151)
65 2elh_A CG11849-PA, LD40883P; s 87.4 0.81 2.8E-05 37.0 5.3 27 475-501 37-63 (87)
66 1oyi_A Double-stranded RNA-bin 87.4 0.49 1.7E-05 38.7 3.9 25 476-500 30-54 (82)
67 2cfx_A HTH-type transcriptiona 87.3 0.87 3E-05 40.0 5.9 42 456-500 2-43 (144)
68 2d1h_A ST1889, 109AA long hypo 87.3 1.1 3.9E-05 36.3 6.2 44 454-499 16-59 (109)
69 2heo_A Z-DNA binding protein 1 87.1 0.63 2.2E-05 36.0 4.2 40 457-498 8-47 (67)
70 3r0j_A Possible two component 87.0 0.86 2.9E-05 43.1 6.1 50 456-506 176-230 (250)
71 2w48_A Sorbitol operon regulat 87.0 0.71 2.4E-05 46.2 5.7 36 463-502 12-47 (315)
72 3k2z_A LEXA repressor; winged 86.5 0.61 2.1E-05 43.4 4.6 43 456-498 2-46 (196)
73 2w25_A Probable transcriptiona 86.2 1.1 3.7E-05 39.6 5.9 42 456-500 4-45 (150)
74 2cyy_A Putative HTH-type trans 86.1 1.1 3.7E-05 39.7 5.9 42 456-500 4-45 (151)
75 3bpv_A Transcriptional regulat 86.0 1.9 6.5E-05 36.5 7.3 52 446-500 14-67 (138)
76 1r1u_A CZRA, repressor protein 85.9 2 6.7E-05 35.7 7.0 47 449-499 15-62 (106)
77 2p5v_A Transcriptional regulat 85.8 1.1 3.8E-05 40.1 5.8 42 456-500 7-48 (162)
78 3ech_A MEXR, multidrug resista 85.7 1.6 5.5E-05 37.5 6.7 52 446-500 20-75 (142)
79 2o3f_A Putative HTH-type trans 85.6 1.8 6.2E-05 36.8 6.8 50 447-498 9-61 (111)
80 1i1g_A Transcriptional regulat 85.6 0.95 3.3E-05 39.3 5.1 41 457-500 2-42 (141)
81 2cg4_A Regulatory protein ASNC 85.4 1.2 4.1E-05 39.4 5.8 42 456-500 5-46 (152)
82 2pn6_A ST1022, 150AA long hypo 85.3 1.3 4.5E-05 38.9 6.0 41 457-500 1-41 (150)
83 3cuo_A Uncharacterized HTH-typ 85.2 1.3 4.4E-05 35.6 5.4 45 452-499 16-61 (99)
84 1ku9_A Hypothetical protein MJ 84.8 2.2 7.4E-05 36.4 7.1 50 448-499 13-64 (152)
85 2jn6_A Protein CGL2762, transp 84.4 1.5 5.2E-05 35.7 5.6 40 457-500 6-47 (97)
86 3tgn_A ADC operon repressor AD 84.4 1.6 5.6E-05 37.4 6.1 41 456-500 35-75 (146)
87 2x4h_A Hypothetical protein SS 84.3 1.4 4.7E-05 38.0 5.5 47 454-500 8-55 (139)
88 3i4p_A Transcriptional regulat 84.2 1.5 5.2E-05 39.4 6.0 40 457-499 1-40 (162)
89 3bro_A Transcriptional regulat 84.2 3.4 0.00011 35.0 8.0 54 446-500 19-74 (141)
90 3cdh_A Transcriptional regulat 84.0 3.1 0.00011 36.1 7.8 52 446-500 28-81 (155)
91 2gxg_A 146AA long hypothetical 83.9 3.3 0.00011 35.3 7.9 48 449-500 25-74 (146)
92 2nnn_A Probable transcriptiona 83.8 2 6.7E-05 36.4 6.3 50 448-500 26-76 (140)
93 1jgs_A Multiple antibiotic res 83.8 2.8 9.5E-05 35.5 7.3 54 445-501 18-73 (138)
94 4hbl_A Transcriptional regulat 83.8 2.9 0.0001 36.2 7.5 52 447-501 27-80 (149)
95 3nqo_A MARR-family transcripti 83.7 2.6 9.1E-05 38.5 7.5 55 445-500 27-81 (189)
96 3pqk_A Biofilm growth-associat 83.6 2.7 9.3E-05 34.4 6.9 47 449-499 12-59 (102)
97 3jth_A Transcription activator 83.6 1.6 5.6E-05 35.4 5.4 47 449-499 12-59 (98)
98 1y0u_A Arsenical resistance op 83.5 4.2 0.00014 32.9 7.9 37 458-499 30-66 (96)
99 3bdd_A Regulatory protein MARR 83.5 2.7 9.4E-05 35.6 7.1 42 456-500 28-69 (142)
100 1u78_A TC3 transposase, transp 83.3 6.3 0.00022 33.5 9.4 78 385-500 23-103 (141)
101 2rdp_A Putative transcriptiona 83.2 3 0.0001 35.9 7.3 52 447-501 28-81 (150)
102 3frw_A Putative Trp repressor 83.2 1.5 5.2E-05 37.5 5.1 40 457-496 37-78 (107)
103 2htj_A P fimbrial regulatory p 83.2 1.7 5.9E-05 34.3 5.3 25 475-499 13-37 (81)
104 3hsr_A HTH-type transcriptiona 83.2 2.2 7.7E-05 36.6 6.4 53 445-500 20-74 (140)
105 2lkp_A Transcriptional regulat 83.1 3.4 0.00012 34.7 7.4 48 449-500 21-69 (119)
106 2fa5_A Transcriptional regulat 82.9 4.2 0.00014 35.5 8.2 52 447-501 34-88 (162)
107 2e1c_A Putative HTH-type trans 82.9 1.7 6E-05 39.6 5.8 42 456-500 24-65 (171)
108 3eco_A MEPR; mutlidrug efflux 82.8 3.2 0.00011 35.3 7.2 55 445-500 15-71 (139)
109 3g3z_A NMB1585, transcriptiona 82.7 2.9 0.0001 35.9 7.0 51 447-500 17-69 (145)
110 2fbh_A Transcriptional regulat 82.6 2.6 8.7E-05 36.0 6.6 53 446-500 22-76 (146)
111 3sqn_A Conserved domain protei 82.5 1.5 5.2E-05 46.7 6.1 119 370-506 20-138 (485)
112 3bj6_A Transcriptional regulat 82.2 3.2 0.00011 35.8 7.0 51 447-500 26-78 (152)
113 2k27_A Paired box protein PAX- 82.1 0.63 2.2E-05 41.5 2.5 40 456-499 25-64 (159)
114 2pex_A Transcriptional regulat 82.1 2.8 9.6E-05 36.3 6.7 53 446-501 32-86 (153)
115 2zkz_A Transcriptional repress 82.0 1.6 5.6E-05 35.9 4.8 39 458-499 26-64 (99)
116 1r1t_A Transcriptional repress 82.0 3.2 0.00011 35.6 6.9 46 450-499 36-82 (122)
117 1uxc_A FRUR (1-57), fructose r 81.9 1.1 3.8E-05 34.6 3.5 23 477-499 1-23 (65)
118 1sfu_A 34L protein; protein/Z- 81.9 2.3 7.8E-05 34.1 5.3 27 474-500 27-53 (75)
119 2qww_A Transcriptional regulat 81.7 3.3 0.00011 35.8 7.0 50 449-501 29-80 (154)
120 2glo_A Brinker CG9653-PA; prot 81.6 1.6 5.4E-05 32.5 4.2 25 476-500 21-49 (59)
121 2ia0_A Putative HTH-type trans 81.5 2.1 7.2E-05 39.0 5.8 42 455-499 13-54 (171)
122 2oqg_A Possible transcriptiona 81.5 2.7 9.1E-05 34.8 6.1 46 450-499 11-57 (114)
123 4b8x_A SCO5413, possible MARR- 81.0 3.2 0.00011 36.4 6.7 55 445-500 19-75 (147)
124 3k0l_A Repressor protein; heli 80.9 3.4 0.00012 36.3 6.9 53 445-500 30-84 (162)
125 1s3j_A YUSO protein; structura 80.8 2.5 8.4E-05 36.6 5.8 51 447-500 23-75 (155)
126 2a61_A Transcriptional regulat 80.8 2.9 9.9E-05 35.7 6.2 42 456-500 30-71 (145)
127 1lj9_A Transcriptional regulat 80.5 2.5 8.7E-05 36.0 5.8 53 446-501 14-68 (144)
128 1q1h_A TFE, transcription fact 80.5 1.7 5.7E-05 36.2 4.4 40 457-498 16-55 (110)
129 2qvo_A Uncharacterized protein 80.3 1.5 5.1E-05 35.7 4.0 45 456-500 9-54 (95)
130 2l0k_A Stage III sporulation p 80.2 1.4 4.7E-05 36.7 3.7 38 459-500 7-44 (93)
131 3nrv_A Putative transcriptiona 80.2 2.5 8.4E-05 36.4 5.6 43 456-501 37-79 (148)
132 3cjn_A Transcriptional regulat 80.2 2.8 9.4E-05 36.7 6.0 42 456-500 49-90 (162)
133 3oop_A LIN2960 protein; protei 80.0 2.9 9.9E-05 35.8 6.0 52 446-500 22-75 (143)
134 3iwf_A Transcription regulator 79.9 4.1 0.00014 34.5 6.7 53 447-499 5-58 (107)
135 2nyx_A Probable transcriptiona 79.9 3 0.0001 37.1 6.2 51 447-500 29-83 (168)
136 1jhf_A LEXA repressor; LEXA SO 79.8 1 3.5E-05 41.7 3.2 45 455-499 2-49 (202)
137 1ais_B TFB TFIIB, protein (tra 79.2 35 0.0012 31.2 13.6 160 306-505 27-194 (200)
138 3fm5_A Transcriptional regulat 79.1 5.8 0.0002 34.2 7.7 53 445-499 23-77 (150)
139 3clo_A Transcriptional regulat 79.1 0.0015 5.2E-08 63.9 -17.3 25 383-407 211-235 (258)
140 3mn2_A Probable ARAC family tr 79.0 12 0.00042 30.6 9.4 38 370-407 4-41 (108)
141 3s2w_A Transcriptional regulat 78.9 3 0.0001 36.5 5.8 53 445-500 34-88 (159)
142 1uly_A Hypothetical protein PH 78.8 3.2 0.00011 38.7 6.2 39 457-499 18-56 (192)
143 2fu4_A Ferric uptake regulatio 78.6 3.8 0.00013 32.2 5.8 41 456-498 14-60 (83)
144 3bja_A Transcriptional regulat 78.5 2.3 7.8E-05 35.9 4.8 52 447-501 19-72 (139)
145 3oou_A LIN2118 protein; protei 78.3 26 0.00089 28.6 11.5 37 371-407 8-44 (108)
146 4fx0_A Probable transcriptiona 78.3 6.2 0.00021 34.6 7.7 55 446-500 18-76 (148)
147 3f6o_A Probable transcriptiona 78.3 1.9 6.6E-05 36.5 4.2 46 450-499 8-54 (118)
148 2jt1_A PEFI protein; solution 78.2 3.5 0.00012 33.0 5.4 26 382-407 22-47 (77)
149 3o9x_A Uncharacterized HTH-typ 77.5 5.2 0.00018 34.3 6.8 38 456-499 70-107 (133)
150 1u2w_A CADC repressor, cadmium 77.4 3.1 0.0001 35.6 5.2 39 458-499 41-79 (122)
151 2xi8_A Putative transcription 77.4 1.7 5.9E-05 31.9 3.2 25 475-499 13-37 (66)
152 2p5k_A Arginine repressor; DNA 77.1 2.9 0.0001 31.0 4.5 25 474-498 17-46 (64)
153 3kp7_A Transcriptional regulat 77.0 3.6 0.00012 35.6 5.7 49 448-500 25-75 (151)
154 3fmy_A HTH-type transcriptiona 77.0 2.4 8.1E-05 32.8 4.0 37 457-499 11-47 (73)
155 3oio_A Transcriptional regulat 76.9 17 0.00059 29.9 9.8 38 370-407 9-46 (113)
156 2a6c_A Helix-turn-helix motif; 76.8 2.8 9.5E-05 33.0 4.5 25 475-499 30-54 (83)
157 3f3x_A Transcriptional regulat 76.6 6.2 0.00021 33.6 7.1 42 456-501 34-75 (144)
158 2kko_A Possible transcriptiona 76.5 2.3 7.8E-05 35.5 4.1 46 450-499 15-61 (108)
159 3kz3_A Repressor protein CI; f 76.5 1.7 5.8E-05 33.9 3.1 24 476-499 25-48 (80)
160 2fbi_A Probable transcriptiona 76.5 2.5 8.5E-05 35.9 4.4 43 456-501 33-75 (142)
161 1p6r_A Penicillinase repressor 76.0 3.1 0.0001 32.7 4.5 43 455-500 5-51 (82)
162 2jt1_A PEFI protein; solution 76.0 1.9 6.3E-05 34.6 3.2 25 475-499 23-47 (77)
163 3qq6_A HTH-type transcriptiona 75.9 2.5 8.6E-05 33.0 3.9 25 475-499 22-46 (78)
164 3e6m_A MARR family transcripti 75.9 4.2 0.00014 35.7 5.9 52 446-500 38-91 (161)
165 1r69_A Repressor protein CI; g 75.8 1.9 6.5E-05 32.0 3.1 25 475-499 13-37 (69)
166 2k9s_A Arabinose operon regula 75.7 21 0.0007 29.2 9.8 38 370-407 5-43 (107)
167 1xmk_A Double-stranded RNA-spe 75.4 1.8 6.2E-05 35.0 3.0 26 474-499 23-49 (79)
168 1zug_A Phage 434 CRO protein; 75.3 2.7 9.3E-05 31.3 3.9 25 475-499 15-39 (71)
169 2eth_A Transcriptional regulat 75.3 3.2 0.00011 36.1 4.9 44 456-502 41-84 (154)
170 2r1j_L Repressor protein C2; p 75.2 2 6.9E-05 31.7 3.1 25 475-499 17-41 (68)
171 3omt_A Uncharacterized protein 75.2 2 6.8E-05 32.7 3.1 24 476-499 21-44 (73)
172 2k9q_A Uncharacterized protein 75.1 2 6.7E-05 33.2 3.1 25 475-499 14-38 (77)
173 2frh_A SARA, staphylococcal ac 74.4 4.3 0.00015 34.6 5.4 51 449-500 25-77 (127)
174 2bv6_A MGRA, HTH-type transcri 74.0 3.1 0.00011 35.4 4.4 42 456-500 34-75 (142)
175 3hyi_A Protein DUF199/WHIA; la 73.7 4.1 0.00014 40.8 5.7 45 454-501 241-285 (295)
176 1y7y_A C.AHDI; helix-turn-heli 73.7 3.2 0.00011 31.2 3.9 25 475-499 25-49 (74)
177 1hlv_A CENP-B, major centromer 73.6 4 0.00014 34.8 5.0 45 456-503 7-52 (131)
178 1ub9_A Hypothetical protein PH 73.6 2.5 8.7E-05 33.8 3.5 39 458-499 15-53 (100)
179 3eus_A DNA-binding protein; st 73.4 3 0.0001 33.1 3.9 25 475-499 26-50 (86)
180 2b5a_A C.BCLI; helix-turn-heli 73.4 3.2 0.00011 31.5 3.9 25 475-499 22-46 (77)
181 1tbx_A ORF F-93, hypothetical 73.3 2.6 9E-05 34.1 3.6 43 456-501 5-51 (99)
182 4aik_A Transcriptional regulat 73.3 9.4 0.00032 33.5 7.5 53 446-500 16-70 (151)
183 3b7h_A Prophage LP1 protein 11 73.0 3.8 0.00013 31.2 4.3 25 475-499 19-43 (78)
184 3f6w_A XRE-family like protein 72.9 2.4 8.1E-05 33.0 3.1 25 475-499 26-50 (83)
185 1adr_A P22 C2 repressor; trans 72.8 2.5 8.4E-05 32.0 3.1 25 475-499 17-41 (76)
186 3t76_A VANU, transcriptional r 72.6 3.3 0.00011 33.7 3.9 25 475-499 36-60 (88)
187 2wiu_B HTH-type transcriptiona 72.5 4.1 0.00014 31.8 4.5 25 475-499 24-48 (88)
188 1x57_A Endothelial differentia 72.4 5 0.00017 31.9 5.0 25 475-499 25-49 (91)
189 4ghj_A Probable transcriptiona 72.4 3.2 0.00011 34.8 3.9 25 475-499 48-72 (101)
190 3deu_A Transcriptional regulat 72.0 7.7 0.00026 34.4 6.7 54 445-500 37-92 (166)
191 3s8q_A R-M controller protein; 71.7 3.6 0.00012 31.9 3.9 25 475-499 23-47 (82)
192 3boq_A Transcriptional regulat 71.4 5.4 0.00018 34.7 5.4 53 447-501 32-87 (160)
193 1neq_A DNA-binding protein NER 71.2 3.4 0.00011 32.5 3.6 25 475-499 21-45 (74)
194 2ef8_A C.ECOT38IS, putative tr 71.1 2.8 9.6E-05 32.4 3.1 25 475-499 22-46 (84)
195 2jsc_A Transcriptional regulat 71.1 4 0.00014 34.6 4.4 37 458-498 20-56 (118)
196 3bs3_A Putative DNA-binding pr 71.0 3.1 0.0001 31.6 3.3 25 475-499 22-46 (76)
197 2wte_A CSA3; antiviral protein 71.0 6.1 0.00021 38.3 6.1 44 453-499 146-189 (244)
198 2ewt_A BLDD, putative DNA-bind 70.9 4.9 0.00017 30.0 4.4 25 475-499 20-46 (71)
199 2fbk_A Transcriptional regulat 70.7 4.4 0.00015 36.4 4.8 56 446-501 54-111 (181)
200 1on2_A Transcriptional regulat 70.7 3.4 0.00012 35.6 3.9 43 457-499 2-45 (142)
201 1okr_A MECI, methicillin resis 70.6 2.6 8.8E-05 35.4 3.0 45 455-502 6-54 (123)
202 2fxa_A Protease production reg 70.6 7.9 0.00027 36.0 6.7 49 449-500 36-86 (207)
203 2kpj_A SOS-response transcript 70.5 4.6 0.00016 32.4 4.4 25 475-499 21-45 (94)
204 3bd1_A CRO protein; transcript 70.0 3.5 0.00012 32.0 3.4 23 476-499 12-34 (79)
205 2rn7_A IS629 ORFA; helix, all 69.8 2.5 8.7E-05 35.0 2.7 25 477-501 31-55 (108)
206 2hin_A GP39, repressor protein 69.4 3.7 0.00013 32.3 3.5 22 478-499 12-33 (71)
207 1z91_A Organic hydroperoxide r 69.4 3.8 0.00013 35.0 3.9 45 456-503 37-81 (147)
208 2wus_R RODZ, putative uncharac 69.1 5.8 0.0002 33.7 4.9 26 474-499 18-43 (112)
209 3jw4_A Transcriptional regulat 68.8 4.2 0.00014 35.0 4.1 52 448-500 28-81 (148)
210 2l8n_A Transcriptional repress 68.8 2.2 7.5E-05 33.1 2.0 23 476-498 9-31 (67)
211 1xn7_A Hypothetical protein YH 68.5 8.6 0.00029 30.7 5.5 26 475-500 15-40 (78)
212 2ppx_A AGR_C_3184P, uncharacte 68.4 4.2 0.00014 33.1 3.8 25 475-499 42-66 (99)
213 1gdt_A GD resolvase, protein ( 68.3 5.5 0.00019 36.3 4.9 24 475-498 157-180 (183)
214 1lmb_3 Protein (lambda repress 68.2 3.4 0.00012 32.7 3.1 25 475-499 29-53 (92)
215 2dk5_A DNA-directed RNA polyme 68.0 3.5 0.00012 33.9 3.2 44 455-499 16-59 (91)
216 1rzs_A Antirepressor, regulato 67.6 2.2 7.6E-05 32.1 1.7 21 477-497 11-31 (61)
217 2r0q_C Putative transposon TN5 67.2 4.9 0.00017 37.5 4.4 24 475-498 174-197 (209)
218 2gau_A Transcriptional regulat 67.1 18 0.00062 33.0 8.4 49 454-506 148-206 (232)
219 2hr3_A Probable transcriptiona 67.0 4.7 0.00016 34.4 4.0 43 457-501 33-75 (147)
220 1z4h_A TORI, TOR inhibition pr 67.0 4.3 0.00015 31.0 3.3 25 476-500 10-34 (66)
221 3u2r_A Regulatory protein MARR 66.8 6.6 0.00023 34.6 5.1 55 445-500 30-86 (168)
222 2o38_A Hypothetical protein; a 66.8 4.8 0.00016 34.5 3.9 25 475-499 52-76 (120)
223 2b0l_A GTP-sensing transcripti 66.7 3.7 0.00013 34.4 3.1 28 475-506 41-69 (102)
224 3g5g_A Regulatory protein; tra 66.5 5.1 0.00018 32.9 3.9 25 475-499 40-64 (99)
225 3mkl_A HTH-type transcriptiona 66.4 40 0.0014 28.0 9.8 36 372-407 11-46 (120)
226 2ict_A Antitoxin HIGA; helix-t 66.2 4.9 0.00017 32.1 3.7 24 476-499 21-44 (94)
227 3mky_B Protein SOPB; partition 65.9 7.9 0.00027 36.3 5.4 46 454-500 21-66 (189)
228 2pij_A Prophage PFL 6 CRO; tra 65.7 6.1 0.00021 29.4 3.9 23 475-498 13-35 (67)
229 2ek5_A Predicted transcription 65.5 6.3 0.00022 34.2 4.5 29 474-506 25-54 (129)
230 2jrt_A Uncharacterized protein 65.4 6.4 0.00022 32.7 4.3 28 474-501 47-74 (95)
231 3lsg_A Two-component response 65.1 52 0.0018 26.4 12.0 34 374-407 8-42 (103)
232 3trb_A Virulence-associated pr 65.0 4.1 0.00014 34.1 3.1 25 475-499 26-50 (104)
233 3op9_A PLI0006 protein; struct 64.3 5.2 0.00018 33.2 3.6 25 475-499 21-45 (114)
234 2k02_A Ferrous iron transport 64.3 6.5 0.00022 32.2 4.0 25 475-499 15-39 (87)
235 2cw1_A SN4M; lambda CRO fold, 64.2 5.8 0.0002 30.7 3.5 22 477-498 14-35 (65)
236 2auw_A Hypothetical protein NE 64.1 13 0.00044 34.2 6.5 37 457-499 90-126 (170)
237 1r71_A Transcriptional repress 64.0 7.8 0.00027 35.8 5.1 41 455-498 34-74 (178)
238 2g9w_A Conserved hypothetical 63.8 8.8 0.0003 33.2 5.2 45 455-501 5-53 (138)
239 2hzt_A Putative HTH-type trans 63.8 6.2 0.00021 32.7 4.0 46 450-499 4-51 (107)
240 3kxa_A NGO0477 protein, putati 63.8 6 0.00021 34.8 4.1 25 475-499 80-104 (141)
241 3mlf_A Transcriptional regulat 63.6 5.4 0.00019 33.5 3.6 25 475-499 35-59 (111)
242 1bl0_A Protein (multiple antib 63.6 33 0.0011 29.0 8.8 38 370-407 13-50 (129)
243 1j5y_A Transcriptional regulat 62.9 8.5 0.00029 35.3 5.1 39 459-499 21-59 (187)
244 4ham_A LMO2241 protein; struct 62.8 5.6 0.00019 34.5 3.6 28 475-506 36-64 (134)
245 3k2a_A Homeobox protein MEIS2; 62.7 15 0.00053 28.0 5.8 55 456-510 4-62 (67)
246 3b73_A PHIH1 repressor-like pr 62.7 6.4 0.00022 33.6 3.9 40 457-499 11-52 (111)
247 3vk0_A NHTF, transcriptional r 62.5 5.5 0.00019 33.3 3.4 25 475-499 33-57 (114)
248 1b0n_A Protein (SINR protein); 62.0 5.2 0.00018 32.7 3.1 25 475-499 13-37 (111)
249 2ao9_A Phage protein; structur 62.0 6.8 0.00023 35.6 4.1 45 455-499 22-71 (155)
250 3qwg_A ESX-1 secretion-associa 61.7 5.7 0.00019 34.4 3.4 25 474-498 22-51 (123)
251 3cec_A Putative antidote prote 61.6 5.3 0.00018 32.6 3.1 24 476-499 31-54 (104)
252 3fym_A Putative uncharacterize 61.2 5.5 0.00019 34.5 3.3 26 475-500 15-40 (130)
253 2o0m_A Transcriptional regulat 60.8 1.8 6E-05 44.0 0.0 42 457-501 18-59 (345)
254 3f52_A CLP gene regulator (CLG 60.8 5.3 0.00018 33.3 3.1 24 476-499 41-64 (117)
255 3ivp_A Putative transposon-rel 60.8 6.8 0.00023 33.1 3.8 25 475-499 24-48 (126)
256 3ryp_A Catabolite gene activat 60.7 25 0.00085 31.4 7.9 27 476-506 167-193 (210)
257 2eby_A Putative HTH-type trans 60.4 5.6 0.00019 32.9 3.1 26 474-499 22-47 (113)
258 2vn2_A DNAD, chromosome replic 60.3 13 0.00046 31.9 5.6 46 456-501 29-76 (128)
259 2l49_A C protein; P2 bacteriop 60.1 6.7 0.00023 31.4 3.5 25 475-499 16-40 (99)
260 3neu_A LIN1836 protein; struct 60.1 8.8 0.0003 32.9 4.4 28 475-506 35-63 (125)
261 3lfp_A CSP231I C protein; tran 59.9 7.2 0.00025 31.5 3.6 25 475-499 13-41 (98)
262 3e7l_A Transcriptional regulat 59.8 8.4 0.00029 29.0 3.7 23 476-498 32-54 (63)
263 1fx7_A Iron-dependent represso 59.6 3.2 0.00011 39.4 1.6 43 456-499 3-47 (230)
264 2da1_A Alpha-fetoprotein enhan 59.6 22 0.00076 27.0 6.2 52 457-508 14-66 (70)
265 1k61_A Mating-type protein alp 59.2 19 0.00065 26.5 5.6 52 456-507 4-59 (60)
266 1z7u_A Hypothetical protein EF 59.1 8.6 0.00029 32.1 4.1 46 450-499 12-59 (112)
267 1l9z_H Sigma factor SIGA; heli 59.1 96 0.0033 32.5 13.0 25 383-407 394-418 (438)
268 3r1f_A ESX-1 secretion-associa 58.9 6.5 0.00022 34.5 3.4 25 474-498 24-53 (135)
269 1sd4_A Penicillinase repressor 58.8 9.4 0.00032 31.9 4.3 44 455-501 6-53 (126)
270 4bbr_M Transcription initiatio 58.8 11 0.00037 38.4 5.5 34 475-508 291-324 (345)
271 2hdd_A Protein (engrailed home 58.2 20 0.00067 26.6 5.5 51 456-506 9-60 (61)
272 1j9i_A GPNU1 DBD;, terminase s 58.0 4.9 0.00017 30.7 2.1 25 477-501 3-27 (68)
273 2k40_A Homeobox expressed in E 58.0 24 0.00084 26.6 6.2 54 456-509 7-61 (67)
274 2ecc_A Homeobox and leucine zi 57.8 17 0.00059 29.0 5.3 52 456-507 9-61 (76)
275 2vz4_A Tipal, HTH-type transcr 57.6 5.8 0.0002 33.2 2.7 26 476-501 1-26 (108)
276 3a03_A T-cell leukemia homeobo 57.5 19 0.00066 26.2 5.3 51 456-506 3-54 (56)
277 3b02_A Transcriptional regulat 57.5 27 0.00091 31.1 7.4 49 454-506 107-165 (195)
278 2kfs_A Conserved hypothetical 57.4 5.3 0.00018 36.1 2.5 24 476-499 31-54 (148)
279 2h09_A Transcriptional regulat 57.4 6.9 0.00024 34.2 3.3 25 475-499 53-77 (155)
280 3f6v_A Possible transcriptiona 57.1 7.1 0.00024 34.9 3.4 38 458-499 57-94 (151)
281 2zcw_A TTHA1359, transcription 56.9 32 0.0011 30.7 7.9 27 476-506 146-172 (202)
282 1g2h_A Transcriptional regulat 56.5 9.5 0.00033 28.6 3.5 21 478-498 35-55 (61)
283 2y75_A HTH-type transcriptiona 56.5 9.4 0.00032 32.6 3.9 26 474-499 24-49 (129)
284 1rr7_A Middle operon regulator 56.3 13 0.00045 32.5 4.9 39 459-503 81-119 (129)
285 2oz6_A Virulence factor regula 56.2 33 0.0011 30.4 7.9 27 476-506 164-190 (207)
286 1v4r_A Transcriptional repress 55.9 4 0.00014 33.6 1.4 28 475-506 33-61 (102)
287 2l1p_A DNA-binding protein SAT 55.9 7.5 0.00026 31.7 2.9 24 476-499 32-55 (83)
288 3c7j_A Transcriptional regulat 55.9 9.8 0.00033 36.2 4.3 29 474-506 47-75 (237)
289 3tqn_A Transcriptional regulat 55.6 8.6 0.00029 32.3 3.5 28 475-506 31-59 (113)
290 2pg4_A Uncharacterized protein 55.5 8.8 0.0003 30.8 3.4 27 475-501 29-56 (95)
291 2jvl_A TRMBF1; coactivator, he 55.5 6.5 0.00022 32.7 2.7 25 475-499 48-72 (107)
292 1hw1_A FADR, fatty acid metabo 55.4 10 0.00035 35.6 4.3 29 474-506 28-57 (239)
293 3k2z_A LEXA repressor; winged 55.1 21 0.00073 32.7 6.4 40 368-407 8-47 (196)
294 1bia_A BIRA bifunctional prote 55.0 15 0.00052 36.6 5.8 40 458-500 4-43 (321)
295 3iwz_A CAP-like, catabolite ac 54.9 42 0.0014 30.3 8.4 27 476-506 187-213 (230)
296 3a02_A Homeobox protein arista 54.8 21 0.00071 26.3 5.2 52 456-507 5-57 (60)
297 1le8_B Mating-type protein alp 54.6 24 0.00081 28.0 5.8 57 457-513 9-69 (83)
298 3uj3_X DNA-invertase; helix-tu 54.4 2.6 9E-05 38.8 0.0 34 462-500 149-182 (193)
299 4a0z_A Transcription factor FA 54.1 13 0.00046 34.5 4.8 35 459-496 12-46 (190)
300 1j1v_A Chromosomal replication 53.9 25 0.00086 28.9 6.0 31 475-505 45-76 (94)
301 3mn2_A Probable ARAC family tr 53.6 20 0.00067 29.3 5.4 27 474-500 16-42 (108)
302 3bdn_A Lambda repressor; repre 53.6 7.7 0.00026 36.3 3.2 25 475-499 29-53 (236)
303 1pdn_C Protein (PRD paired); p 53.5 25 0.00087 28.7 6.1 24 385-408 34-57 (128)
304 4ev0_A Transcription regulator 53.5 19 0.00065 32.3 5.7 28 475-506 162-189 (216)
305 3oou_A LIN2118 protein; protei 53.4 21 0.00071 29.2 5.5 27 474-500 19-45 (108)
306 3dv8_A Transcriptional regulat 53.3 10 0.00035 34.3 3.9 27 476-506 169-195 (220)
307 3lsg_A Two-component response 53.2 22 0.00075 28.7 5.5 26 475-500 18-43 (103)
308 1ft9_A Carbon monoxide oxidati 53.2 10 0.00034 34.7 3.8 27 476-506 163-189 (222)
309 2qq9_A Diphtheria toxin repres 53.1 4.8 0.00016 38.2 1.6 44 456-500 3-48 (226)
310 2v79_A DNA replication protein 52.9 15 0.0005 32.3 4.7 48 456-503 29-78 (135)
311 3e97_A Transcriptional regulat 52.9 10 0.00035 34.7 3.9 27 476-506 175-201 (231)
312 1yz8_P Pituitary homeobox 2; D 52.6 38 0.0013 25.6 6.5 52 456-507 9-61 (68)
313 3hrs_A Metalloregulator SCAR; 52.5 13 0.00045 34.8 4.6 28 474-501 18-45 (214)
314 3rkx_A Biotin-[acetyl-COA-carb 52.4 10 0.00034 38.2 4.0 40 459-499 3-42 (323)
315 1vz0_A PARB, chromosome partit 52.3 16 0.00055 34.9 5.2 40 456-498 117-156 (230)
316 1y6u_A XIS, excisionase from t 52.3 8.4 0.00029 30.2 2.6 24 476-499 16-39 (70)
317 2ofy_A Putative XRE-family tra 52.2 8.9 0.00031 29.8 2.9 22 478-499 29-50 (86)
318 3sxy_A Transcriptional regulat 52.2 9.9 0.00034 35.4 3.6 38 463-506 24-61 (218)
319 2p4w_A Transcriptional regulat 52.0 15 0.0005 34.5 4.8 43 453-499 8-51 (202)
320 2da2_A Alpha-fetoprotein enhan 52.0 21 0.00071 27.2 4.9 53 457-509 14-67 (70)
321 1akh_A Protein (mating-type pr 51.9 20 0.00069 26.4 4.7 48 456-503 11-59 (61)
322 3by6_A Predicted transcription 51.7 11 0.00036 32.6 3.5 28 475-506 33-61 (126)
323 2bnm_A Epoxidase; oxidoreducta 51.6 12 0.00039 34.0 3.9 25 475-499 22-46 (198)
324 3rkq_A Homeobox protein NKX-2. 51.6 34 0.0012 24.6 5.9 49 456-504 8-57 (58)
325 2fmy_A COOA, carbon monoxide o 51.5 11 0.00036 34.4 3.7 28 475-506 166-193 (220)
326 3gbg_A TCP pilus virulence reg 51.1 1.6E+02 0.0054 27.6 12.4 35 372-406 173-207 (276)
327 3d0s_A Transcriptional regulat 51.1 11 0.00039 34.3 3.8 27 476-506 177-203 (227)
328 1puf_B PRE-B-cell leukemia tra 50.9 28 0.00096 26.7 5.5 54 456-509 7-64 (73)
329 1ig7_A Homeotic protein MSX-1; 50.8 28 0.00096 25.3 5.3 49 457-505 7-56 (58)
330 1jgg_A Segmentation protein EV 50.7 28 0.00095 25.6 5.3 50 457-506 8-58 (60)
331 2h8r_A Hepatocyte nuclear fact 50.7 25 0.00086 33.7 6.2 24 475-498 43-66 (221)
332 1y9q_A Transcriptional regulat 50.6 12 0.00041 33.9 3.9 25 475-499 23-47 (192)
333 2p5t_A Putative transcriptiona 50.4 3.3 0.00011 36.9 0.0 26 474-499 12-37 (158)
334 1ntc_A Protein (nitrogen regul 50.4 9.8 0.00033 30.9 2.9 38 459-499 50-87 (91)
335 1r8d_A Transcription activator 50.1 7.1 0.00024 32.7 2.0 25 477-501 3-27 (109)
336 3rqi_A Response regulator prot 49.9 12 0.0004 33.2 3.7 38 457-497 140-177 (184)
337 3fx3_A Cyclic nucleotide-bindi 49.9 10 0.00034 34.9 3.3 27 476-506 178-204 (237)
338 3dkw_A DNR protein; CRP-FNR, H 49.8 10 0.00034 34.5 3.2 27 476-506 178-204 (227)
339 2f2e_A PA1607; transcription f 49.7 20 0.00068 31.5 5.0 25 475-499 36-60 (146)
340 2jml_A DNA binding domain/tran 49.5 7.7 0.00026 30.6 2.1 24 476-499 5-28 (81)
341 3e6c_C CPRK, cyclic nucleotide 49.2 13 0.00043 34.8 3.9 27 476-506 177-203 (250)
342 3kcc_A Catabolite gene activat 48.7 40 0.0014 31.6 7.5 27 476-506 217-243 (260)
343 2da4_A Hypothetical protein DK 48.6 38 0.0013 26.5 6.1 51 456-506 14-69 (80)
344 1b72_B Protein (PBX1); homeodo 48.5 36 0.0012 27.0 6.0 54 456-509 7-64 (87)
345 2dmt_A Homeobox protein BARH-l 48.1 31 0.0011 27.0 5.5 52 457-508 24-76 (80)
346 2ovg_A Phage lambda CRO; trans 48.0 14 0.00049 28.4 3.3 21 478-498 15-35 (66)
347 2hwv_A DNA-binding response re 48.0 40 0.0014 28.5 6.6 50 456-506 43-97 (121)
348 2k9s_A Arabinose operon regula 47.6 24 0.00083 28.7 5.0 26 475-500 19-44 (107)
349 2dmu_A Homeobox protein goosec 47.6 32 0.0011 26.1 5.4 51 457-507 14-65 (70)
350 3la7_A Global nitrogen regulat 47.6 14 0.00047 34.5 3.9 27 476-506 193-219 (243)
351 2di3_A Bacterial regulatory pr 47.5 16 0.00056 34.4 4.4 38 463-506 16-54 (239)
352 3dn7_A Cyclic nucleotide bindi 47.5 8.5 0.00029 34.2 2.3 25 475-499 167-191 (194)
353 3oio_A Transcriptional regulat 47.5 19 0.00065 29.7 4.3 27 474-500 21-47 (113)
354 2obp_A Putative DNA-binding pr 47.4 28 0.00095 28.9 5.2 44 456-499 13-59 (96)
355 2e1o_A Homeobox protein PRH; D 47.4 32 0.0011 26.2 5.3 50 457-506 14-64 (70)
356 2dn0_A Zinc fingers and homeob 46.8 28 0.00097 27.0 5.0 54 456-509 14-68 (76)
357 2hs5_A Putative transcriptiona 46.5 13 0.00046 35.2 3.6 38 463-506 40-77 (239)
358 1stz_A Heat-inducible transcri 46.4 24 0.00081 35.8 5.6 41 457-498 15-60 (338)
359 2k9l_A RNA polymerase sigma fa 46.4 36 0.0012 26.7 5.5 52 443-497 15-69 (76)
360 2oa4_A SIR5; structure, struct 46.3 13 0.00044 31.4 3.0 28 475-502 49-76 (101)
361 1yyv_A Putative transcriptiona 46.0 15 0.00051 31.8 3.5 25 475-499 47-72 (131)
362 2ly9_A Zinc fingers and homeob 46.0 28 0.00094 26.8 4.8 54 457-510 13-67 (74)
363 1umq_A Photosynthetic apparatu 45.9 15 0.00051 29.6 3.2 23 476-498 54-76 (81)
364 2dmq_A LIM/homeobox protein LH 45.9 33 0.0011 26.7 5.3 51 457-507 14-65 (80)
365 2djn_A Homeobox protein DLX-5; 45.7 29 0.00099 26.5 4.8 51 457-507 14-65 (70)
366 1zyb_A Transcription regulator 45.7 14 0.0005 34.0 3.7 27 476-506 186-212 (232)
367 2h1k_A IPF-1, pancreatic and d 45.6 37 0.0013 25.2 5.4 50 457-506 10-60 (63)
368 2fsw_A PG_0823 protein; alpha- 45.6 12 0.00043 30.7 2.9 25 475-499 37-62 (107)
369 2qlz_A Transcription factor PF 45.5 27 0.00092 33.5 5.6 25 475-499 177-201 (232)
370 2cra_A Homeobox protein HOX-B1 45.5 27 0.00093 26.6 4.6 52 457-508 14-66 (70)
371 2cue_A Paired box protein PAX6 45.4 43 0.0015 26.2 5.9 53 456-508 13-66 (80)
372 3plo_X DNA-invertase; resolvas 45.3 4.5 0.00015 37.3 0.0 29 475-503 157-185 (193)
373 1zq3_P PRD-4, homeotic bicoid 45.2 47 0.0016 25.1 5.9 52 456-507 8-60 (68)
374 3ihu_A Transcriptional regulat 45.2 15 0.0005 34.3 3.6 38 463-506 28-65 (222)
375 2g7u_A Transcriptional regulat 45.0 26 0.0009 33.5 5.5 26 474-499 27-52 (257)
376 3nau_A Zinc fingers and homeob 45.0 36 0.0012 26.4 5.1 49 458-506 12-61 (66)
377 1c9b_A General transcription f 44.9 1.8E+02 0.0062 26.4 12.8 29 475-503 158-186 (207)
378 1bw5_A ISL-1HD, insulin gene e 44.8 30 0.001 26.0 4.7 51 457-507 10-61 (66)
379 2m0c_A Homeobox protein arista 44.6 39 0.0013 25.8 5.5 53 457-509 16-69 (75)
380 3egq_A TETR family transcripti 44.4 27 0.00093 29.8 5.1 25 473-497 21-45 (170)
381 1ahd_P Antennapedia protein mu 43.9 53 0.0018 24.8 6.1 51 457-507 9-60 (68)
382 1hkq_A REPA, replication prote 43.7 52 0.0018 28.3 6.8 58 450-507 12-78 (132)
383 2xrn_A HTH-type transcriptiona 43.7 18 0.00062 34.4 4.0 26 475-500 20-45 (241)
384 3f8m_A GNTR-family protein tra 43.3 28 0.00094 33.3 5.3 29 474-506 33-62 (248)
385 2da3_A Alpha-fetoprotein enhan 43.2 23 0.00077 27.7 3.9 51 458-508 25-76 (80)
386 1mkm_A ICLR transcriptional re 42.9 20 0.00069 34.1 4.3 25 475-499 22-46 (249)
387 1b8i_A Ultrabithorax, protein 42.9 43 0.0015 26.3 5.6 53 456-508 26-79 (81)
388 1p4x_A Staphylococcal accessor 42.5 53 0.0018 31.5 7.3 44 456-500 155-198 (250)
389 3edp_A LIN2111 protein; APC883 42.5 21 0.00072 33.9 4.3 28 475-506 31-59 (236)
390 1du6_A PBX1, homeobox protein 42.5 17 0.00057 27.2 2.9 50 457-506 10-63 (64)
391 2o0y_A Transcriptional regulat 42.4 26 0.00089 33.6 5.0 26 474-499 36-61 (260)
392 3bqz_B HTH-type transcriptiona 42.1 19 0.00064 31.3 3.7 27 467-496 16-42 (194)
393 3bwg_A Uncharacterized HTH-typ 42.1 22 0.00074 33.8 4.3 29 474-506 26-55 (239)
394 3rjp_A COVR; winged helix-turn 42.1 51 0.0018 26.2 6.1 51 456-507 22-77 (96)
395 1ic8_A Hepatocyte nuclear fact 41.8 36 0.0012 31.9 5.6 24 475-498 42-65 (194)
396 4ich_A Transcriptional regulat 41.8 7.8 0.00027 37.7 1.1 24 474-497 138-161 (311)
397 2zcm_A Biofilm operon icaabcd 41.6 23 0.00079 30.9 4.2 27 467-496 21-47 (192)
398 3vpr_A Transcriptional regulat 41.6 19 0.00067 31.4 3.7 28 467-497 17-44 (190)
399 2wv0_A YVOA, HTH-type transcri 41.6 23 0.00077 33.8 4.4 28 475-506 32-60 (243)
400 3qkx_A Uncharacterized HTH-typ 41.5 21 0.00071 30.7 3.8 23 474-496 26-48 (188)
401 1ftt_A TTF-1 HD, thyroid trans 41.5 45 0.0015 25.2 5.3 51 457-507 9-60 (68)
402 3lfp_A CSP231I C protein; tran 41.3 34 0.0012 27.3 4.8 71 385-465 15-89 (98)
403 1iuf_A Centromere ABP1 protein 41.3 12 0.00042 32.8 2.3 47 456-504 11-64 (144)
404 3lwf_A LIN1550 protein, putati 41.3 31 0.0011 31.0 5.0 26 474-499 42-67 (159)
405 4dyq_A Gene 1 protein; GP1, oc 41.2 17 0.00058 31.8 3.2 33 463-499 19-52 (140)
406 3t8r_A Staphylococcus aureus C 41.1 27 0.00091 30.6 4.5 25 475-499 27-51 (143)
407 1mnm_C Protein (MAT alpha-2 tr 41.0 45 0.0016 26.5 5.5 50 456-505 33-86 (87)
408 3mkl_A HTH-type transcriptiona 41.0 28 0.00097 29.0 4.5 24 475-498 22-45 (120)
409 2fq4_A Transcriptional regulat 41.0 24 0.00082 31.0 4.2 28 467-497 26-53 (192)
410 2r5y_A Homeotic protein sex co 40.9 57 0.0019 26.0 6.1 52 456-507 34-86 (88)
411 2eh3_A Transcriptional regulat 40.6 21 0.00071 31.0 3.7 27 467-496 16-42 (179)
412 2l9r_A Homeobox protein NKX-3. 40.6 32 0.0011 26.6 4.3 53 457-509 11-64 (69)
413 1rp3_A RNA polymerase sigma fa 40.4 2E+02 0.007 25.7 16.1 36 234-269 101-136 (239)
414 1ylf_A RRF2 family protein; st 40.4 27 0.00091 30.7 4.4 26 474-499 28-53 (149)
415 3f2g_A Alkylmercury lyase; MER 40.2 27 0.00094 33.4 4.6 29 381-409 33-61 (220)
416 2dmp_A Zinc fingers and homeob 40.1 47 0.0016 26.7 5.5 52 456-507 19-71 (89)
417 2ia2_A Putative transcriptiona 39.9 26 0.00088 33.8 4.6 26 474-499 34-59 (265)
418 1hsj_A Fusion protein consisti 39.8 26 0.00091 36.2 4.9 53 446-499 389-443 (487)
419 2kt0_A Nanog, homeobox protein 39.8 35 0.0012 26.9 4.6 51 457-507 29-80 (84)
420 4a5n_A Uncharacterized HTH-typ 39.8 21 0.00073 31.1 3.6 47 450-499 16-63 (131)
421 1fjl_A Paired protein; DNA-bin 39.8 47 0.0016 26.0 5.4 51 457-507 25-76 (81)
422 2k4j_A Putative transcriptiona 39.7 40 0.0014 28.3 5.2 50 456-506 41-95 (115)
423 3iuo_A ATP-dependent DNA helic 39.2 45 0.0015 28.5 5.5 28 475-502 31-58 (122)
424 2bgc_A PRFA; bacterial infecti 38.9 17 0.0006 33.5 3.1 27 476-506 169-196 (238)
425 2l7z_A Homeobox protein HOX-A1 38.8 40 0.0014 26.0 4.7 52 457-508 14-66 (73)
426 2fjr_A Repressor protein CI; g 38.8 20 0.00067 32.2 3.3 22 478-499 22-43 (189)
427 2k4b_A Transcriptional regulat 38.4 9.2 0.00031 31.8 0.9 47 453-502 29-79 (99)
428 2dms_A Homeobox protein OTX2; 38.4 42 0.0014 26.2 4.8 51 457-507 14-65 (80)
429 3eet_A Putative GNTR-family tr 38.4 26 0.0009 34.1 4.3 28 475-506 51-79 (272)
430 1nk2_P Homeobox protein VND; h 38.2 51 0.0017 25.5 5.3 51 457-507 16-67 (77)
431 3pvv_A Chromosomal replication 38.1 63 0.0022 26.9 6.1 32 475-506 49-80 (101)
432 2vi6_A Homeobox protein nanog; 38.0 36 0.0012 25.1 4.2 50 456-505 9-59 (62)
433 3lwj_A Putative TETR-family tr 37.8 29 0.00098 30.4 4.2 27 467-496 26-52 (202)
434 2wui_A MEXZ, transcriptional r 37.7 24 0.00083 31.5 3.8 28 467-497 25-52 (210)
435 3df8_A Possible HXLR family tr 37.7 33 0.0011 28.6 4.3 25 475-499 39-66 (111)
436 2pmu_A Response regulator PHOP 37.7 44 0.0015 27.5 5.1 50 456-506 34-88 (110)
437 1d5y_A ROB transcription facto 37.6 87 0.003 29.7 8.0 38 370-407 5-42 (292)
438 1eto_A FIS, factor for inversi 37.5 28 0.00096 28.8 3.8 23 476-498 71-93 (98)
439 1uhs_A HOP, homeodomain only p 37.3 69 0.0024 24.4 5.8 51 456-506 7-59 (72)
440 1bl0_A Protein (multiple antib 37.3 29 0.001 29.3 4.0 27 474-500 25-51 (129)
441 1gxq_A PHOB, phosphate regulon 37.1 53 0.0018 26.7 5.5 51 456-507 31-86 (106)
442 4g6q_A Putative uncharacterize 36.8 34 0.0012 31.2 4.6 42 454-499 17-60 (182)
443 3t72_q RNA polymerase sigma fa 36.7 1.7E+02 0.006 23.9 9.2 25 383-407 38-62 (99)
444 3vp5_A Transcriptional regulat 36.5 27 0.00092 30.8 3.8 23 474-496 30-52 (189)
445 2k9m_A RNA polymerase sigma fa 36.4 85 0.0029 27.2 6.9 54 446-506 9-65 (130)
446 3r4k_A Transcriptional regulat 36.4 25 0.00084 33.9 3.8 27 474-500 19-45 (260)
447 3dpj_A Transcription regulator 36.2 27 0.00091 30.4 3.7 27 468-497 23-49 (194)
448 3gpv_A Transcriptional regulat 36.1 15 0.00051 32.6 2.0 27 476-502 16-42 (148)
449 3vib_A MTRR; helix-turn-helix 36.0 31 0.0011 30.6 4.2 27 467-496 24-50 (210)
450 3cta_A Riboflavin kinase; stru 36.0 21 0.0007 33.6 3.1 29 472-500 23-51 (230)
451 3dew_A Transcriptional regulat 35.9 25 0.00084 30.6 3.4 28 467-497 22-49 (206)
452 3bhq_A Transcriptional regulat 35.9 32 0.0011 30.6 4.3 28 467-497 26-53 (211)
453 3lhq_A Acrab operon repressor 35.8 33 0.0011 30.1 4.3 27 467-496 28-54 (220)
454 1opc_A OMPR, OMPRC; transcript 35.7 30 0.001 28.5 3.7 50 456-506 31-85 (110)
455 3anp_C Transcriptional repress 35.6 32 0.0011 30.4 4.2 27 467-496 23-49 (204)
456 1hqc_A RUVB; extended AAA-ATPa 35.6 40 0.0014 32.4 5.2 45 456-500 244-288 (324)
457 3bru_A Regulatory protein, TET 35.5 28 0.00096 30.9 3.8 27 467-496 44-70 (222)
458 2zhg_A Redox-sensitive transcr 35.5 16 0.00053 32.8 2.0 26 476-501 11-36 (154)
459 2nx4_A Transcriptional regulat 35.4 27 0.00094 30.8 3.7 28 467-497 24-51 (194)
460 2heo_A Z-DNA binding protein 1 35.4 53 0.0018 24.8 4.8 28 380-407 21-48 (67)
461 2i10_A Putative TETR transcrip 35.3 33 0.0011 30.5 4.2 28 467-497 25-52 (202)
462 1pb6_A Hypothetical transcript 35.2 27 0.00092 30.7 3.6 27 467-496 32-58 (212)
463 2dg7_A Putative transcriptiona 35.2 22 0.00075 31.2 3.0 24 474-497 25-48 (195)
464 2hi3_A Homeodomain-only protei 35.2 74 0.0025 24.3 5.7 50 457-506 9-60 (73)
465 1z6r_A MLC protein; transcript 35.2 51 0.0017 33.4 6.1 38 462-502 19-56 (406)
466 2ibd_A Possible transcriptiona 35.2 33 0.0011 30.4 4.2 27 467-496 28-54 (204)
467 2g7s_A Transcriptional regulat 35.1 22 0.00075 30.7 2.9 26 468-496 23-48 (194)
468 2d6y_A Putative TETR family re 35.0 28 0.00094 31.0 3.7 28 467-497 22-49 (202)
469 2pjp_A Selenocysteine-specific 34.8 68 0.0023 27.0 5.9 27 475-501 19-45 (121)
470 3nar_A ZHX1, zinc fingers and 34.8 61 0.0021 26.3 5.4 52 456-507 31-83 (96)
471 2rae_A Transcriptional regulat 34.6 28 0.00094 30.7 3.5 27 467-496 31-57 (207)
472 2yu3_A DNA-directed RNA polyme 34.6 33 0.0011 28.5 3.7 43 455-498 33-75 (95)
473 1x2n_A Homeobox protein pknox1 34.5 55 0.0019 25.0 4.8 53 456-508 13-69 (73)
474 3on4_A Transcriptional regulat 34.4 27 0.00093 30.0 3.4 27 467-496 24-50 (191)
475 2yve_A Transcriptional regulat 34.4 31 0.0011 30.2 3.9 23 474-496 22-44 (185)
476 3k69_A Putative transcription 34.3 22 0.00075 32.0 2.8 26 474-499 26-51 (162)
477 1puf_A HOX-1.7, homeobox prote 34.2 66 0.0022 24.9 5.3 51 457-507 20-71 (77)
478 3f0c_A TETR-molecule A, transc 34.2 29 0.00099 30.7 3.6 27 467-496 25-51 (216)
479 3b81_A Transcriptional regulat 34.1 26 0.00088 30.6 3.2 27 467-496 25-51 (203)
480 2o7t_A Transcriptional regulat 33.8 24 0.00082 31.1 3.0 23 474-496 26-48 (199)
481 1b72_A Protein (homeobox prote 33.8 80 0.0027 25.6 6.0 51 456-506 40-91 (97)
482 2gen_A Probable transcriptiona 33.6 37 0.0013 30.0 4.3 28 467-497 21-48 (197)
483 2f07_A YVDT; helix-turn-helix, 33.6 30 0.001 30.6 3.6 27 467-496 24-50 (197)
484 3kkc_A TETR family transcripti 33.6 28 0.00095 29.8 3.3 24 473-496 29-52 (177)
485 3gzi_A Transcriptional regulat 33.5 26 0.0009 31.0 3.2 28 467-497 31-58 (218)
486 1o5l_A Transcriptional regulat 33.4 20 0.0007 32.4 2.5 27 476-506 164-190 (213)
487 1jhf_A LEXA repressor; LEXA SO 33.1 75 0.0026 28.8 6.4 37 370-406 11-48 (202)
488 3cwr_A Transcriptional regulat 32.9 30 0.001 30.2 3.4 28 467-497 31-58 (208)
489 2p8t_A Hypothetical protein PH 32.6 36 0.0012 32.1 4.0 44 457-506 13-56 (200)
490 3u1d_A Uncharacterized protein 32.4 56 0.0019 29.4 5.1 41 458-499 28-69 (151)
491 3s5r_A Transcriptional regulat 32.2 33 0.0011 30.2 3.7 27 467-496 24-50 (216)
492 3zq7_A KDP operon transcriptio 32.1 67 0.0023 25.8 5.3 51 456-507 28-83 (102)
493 2xdn_A HTH-type transcriptiona 32.0 29 0.00098 30.9 3.2 27 467-496 25-51 (210)
494 1ui5_A A-factor receptor homol 32.0 40 0.0014 30.4 4.2 27 467-496 23-49 (215)
495 3ivp_A Putative transposon-rel 31.9 2.1E+02 0.0073 23.5 8.7 75 384-468 25-105 (126)
496 1x3u_A Transcriptional regulat 31.6 1E+02 0.0035 23.1 6.0 27 381-407 28-54 (79)
497 2dmn_A Homeobox protein TGIF2L 31.5 88 0.003 24.7 5.7 51 457-507 14-68 (83)
498 2q24_A Putative TETR family tr 31.5 40 0.0014 29.4 4.1 26 467-496 29-54 (194)
499 2p7v_B Sigma-70, RNA polymeras 31.3 37 0.0013 25.3 3.3 26 383-408 24-49 (68)
500 2da5_A Zinc fingers and homeob 31.3 54 0.0019 25.3 4.3 50 457-506 14-64 (75)
No 1
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=100.00 E-value=4.5e-53 Score=449.61 Aligned_cols=313 Identities=29% Similarity=0.411 Sum_probs=274.3
Q ss_pred cCCcChHHHHHHhcCCCCCCChHHHHHHHHHHhHhHHHHHHHH------------------HHHHHhCCCCCHHHHHH--
Q 010092 197 SYSTDLVSLDWKKMKIPPVLSSTEHTWLFKLMQPMKVFVQVKE------------------QLQKDLGREPTDVELAE-- 256 (518)
Q Consensus 197 ~~~~d~~~~yl~~i~~~plLt~eEE~~L~~~iq~~~~l~~~~~------------------~l~~~l~r~p~~~ela~-- 256 (518)
..+.|.+++||++|+++|+||++||+.|++.++.+..+.+... .....+++.|+..+|+.
T Consensus 90 ~~~~d~~~~Yl~ei~~~pLLt~eEE~~La~~i~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (438)
T 1l9z_H 90 VSTSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPK 169 (438)
T ss_pred CCCCChHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhHHHHHHhhhccchhhhhhhhhhhhhhcccccccccccccccch
Confidence 4677999999999999999999999999999998754432211 11224566777776632
Q ss_pred ----------HccCCHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010092 257 ----------ATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKR 326 (518)
Q Consensus 257 ----------~~~~s~~~L~~~~~gd~~A~e~LI~~nlrLV~siAkky~~~~~~g~~~eDLIQEG~IGLirAvekFDp~r 326 (518)
..+++...|.....+|..|+++||.+|+++|+++|++|. ++|.+++|||||||||||+|+++|||++
T Consensus 170 ~~~~~~~~~~~~~~~~~eLi~~~~~d~~A~~~Li~~nlrlVv~iA~ry~---~~g~~aeDLIQEg~IgL~kAvekFDp~k 246 (438)
T 1l9z_H 170 TVEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYT---GRGLSFLDLIQEGNQGLIRAVEKFEYKR 246 (438)
T ss_pred hhhhhhhhhhcccchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHHHHHhcCccc
Confidence 124555677777788999999999999999999999999 7899999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHHHHH-hcCCccccccccchhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhC--CCHHHHHH
Q 010092 327 RFRLSTYGLFWIRHAIIRSMT-VSSFTRVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEIIQGVN--ISPERYRE 403 (518)
Q Consensus 327 G~kFSTYA~~wIRqaI~raI~-~sr~iRlP~~~~e~~~~~~~~ki~ka~~eL~~elgR~PT~eELA~~lg--is~e~v~~ 403 (518)
|++|+|||+||||++|.++|+ +.+.+++|.|+.. .+++++++...+.+.+||.|+.+|||+.+| +++++|..
T Consensus 247 G~rFsTYA~~wIR~~I~~~i~~~~R~irlp~~~~~-----~l~~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~~ 321 (438)
T 1l9z_H 247 RFKFSTYATWWIRQAINRAIADQARTIRIPVHMVE-----TINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEE 321 (438)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhcchhccchHHHH-----HHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHH
Confidence 999999999999999999999 8899999999998 999999999999999999999999999999 99999999
Q ss_pred HHHhcCCccccCCCcCCchh-hhhcccccCCCCcchhhhHHHHHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHH
Q 010092 404 VMKASKPILSLHSRHGVTQE-EFINGITDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEI 482 (518)
Q Consensus 404 ~l~~~~~~~SLD~~~~~~~e-el~~~l~d~~~~~~ee~~~~~~l~~~L~~~L~~L~~rEr~VL~lryGL~~~e~~Tl~EI 482 (518)
+++.....+|||.+.+++++ .+.+.+.+....+|++.+....+...|..+|+.||++||.||.+||||+|++++|++||
T Consensus 322 ~~~~~~~~~SLd~~~~~d~d~~l~d~l~d~~~~~pee~~~~~~~~~~L~~aL~~L~ereR~VI~LRygL~~~e~~TleEI 401 (438)
T 1l9z_H 322 TLKIAQEPVSLETPIGDEKDSFYGDFIPDENLPSPVEAAAQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEV 401 (438)
T ss_pred HHHhcccccccccccccccchhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCCHHHH
Confidence 99999999999998765443 34455555444557777777788899999999999999999999999999899999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHh-Ccchhhhhhhhc
Q 010092 483 AGNLNISREMVRKHEVKGLMKLK-HPTRVDYLRQHM 517 (518)
Q Consensus 483 A~~LgISrerVRqie~rALkKLR-~~~~~~~L~~y~ 517 (518)
|+.||||+++|||++++|++||| ++.+...|++|+
T Consensus 402 Ae~LgIS~erVRqi~~RAlkKLR~~~~~~~~l~~yl 437 (438)
T 1l9z_H 402 GAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFL 437 (438)
T ss_pred HHHHCcCHHHHHHHHHHHHHHHHHhHhhHHHHHHhh
Confidence 99999999999999999999999 888999999997
No 2
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=100.00 E-value=3.5e-53 Score=450.37 Aligned_cols=313 Identities=30% Similarity=0.415 Sum_probs=265.3
Q ss_pred cCCcChHHHHHHhcCCCCCCChHHHHHHHHHHhHhHHHHHHHHH------------------HHHHhCCCCCHHH-----
Q 010092 197 SYSTDLVSLDWKKMKIPPVLSSTEHTWLFKLMQPMKVFVQVKEQ------------------LQKDLGREPTDVE----- 253 (518)
Q Consensus 197 ~~~~d~~~~yl~~i~~~plLt~eEE~~L~~~iq~~~~l~~~~~~------------------l~~~l~r~p~~~e----- 253 (518)
...+|.+++||++|+.+|+||++||.+|++.++.+..+...... ....+++.|+..+
T Consensus 75 ~~~~d~~~~Yl~ei~~~plLt~eEE~~La~ri~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (423)
T 2a6h_F 75 ISTSDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPK 154 (423)
T ss_dssp CTTHHHHHHHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHTTSCSSSCTTH
T ss_pred cCCCcHHHHHHHHhcccCCCCHHHHHHHHHHHHhchhHHHHHHHhhccchhhhhhhHhhhhhhhhhcccccchhhhhhhh
Confidence 45679999999999999999999999999999886433221111 0012234555333
Q ss_pred ----HHH---HccCCHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010092 254 ----LAE---ATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKR 326 (518)
Q Consensus 254 ----la~---~~~~s~~~L~~~~~gd~~A~e~LI~~nlrLV~siAkky~~~~~~g~~~eDLIQEG~IGLirAvekFDp~r 326 (518)
|+. +++++...|.....+|..|+++||.+|+++|+++|++|. ++|.+++|||||||+|||+|+++|||++
T Consensus 155 ~~~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~Li~~~lrlV~~iA~~y~---~~~~~~eDLiQEg~igL~kav~kFd~~~ 231 (423)
T 2a6h_F 155 TVEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYT---GRGLSFLDLIQEGNQGLIRAVEKFEYKR 231 (423)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTTC---TTTSCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred hhhhhhhhhhcccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHHHHHhcCccc
Confidence 221 234555666666777899999999999999999999999 7899999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHHHHH-hcCCccccccccchhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhC--CCHHHHHH
Q 010092 327 RFRLSTYGLFWIRHAIIRSMT-VSSFTRVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEIIQGVN--ISPERYRE 403 (518)
Q Consensus 327 G~kFSTYA~~wIRqaI~raI~-~sr~iRlP~~~~e~~~~~~~~ki~ka~~eL~~elgR~PT~eELA~~lg--is~e~v~~ 403 (518)
|++|+|||+||||++|.++|+ +.+++++|.|+.+ .+++++++...+.+.+||.|+.+|||+.+| +++++|..
T Consensus 232 g~~FstYa~~wIr~~i~~~i~~~~r~ir~p~~~~~-----~~~~lrr~~~~l~~~~~r~p~~~eiA~~l~~~~~~~~v~~ 306 (423)
T 2a6h_F 232 RFKFSTYATWWIRQAINRAIADQARTIRIPVHMVE-----TINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEE 306 (423)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHSSSSCCCHHHHH-----HHHHHHHHHHHHHHHHSSCCCHHHHHHHHCTTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHccceeeccHHHHH-----HHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHH
Confidence 999999999999999999999 8899999999998 999999999999999999999999999999 99999999
Q ss_pred HHHhcCCccccCCCcCCchh-hhhcccccCCCCcchhhhHHHHHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHH
Q 010092 404 VMKASKPILSLHSRHGVTQE-EFINGITDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEI 482 (518)
Q Consensus 404 ~l~~~~~~~SLD~~~~~~~e-el~~~l~d~~~~~~ee~~~~~~l~~~L~~~L~~L~~rEr~VL~lryGL~~~e~~Tl~EI 482 (518)
++......+|||.+.+++++ .+.+.+.+....+|++.+....+...|..+|+.||++|+.||.+||||+|++++|++||
T Consensus 307 ~~~~~~~~~Sld~~~~~~~~~~l~d~l~d~~~~~pe~~~~~~~~~~~L~~aL~~L~~rer~Vl~lr~~L~~~e~~Tl~EI 386 (423)
T 2a6h_F 307 TLKIAQEPVSLETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEV 386 (423)
T ss_dssp HHHHHSCCEESSCBCSSSSSCBGGGSSCCSSSCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCC-----CHH
T ss_pred HHHhccCCcccccccCCCCccchhhhhccccCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhccCCCCCCCHHHH
Confidence 99999999999998765433 35555555545567777777888899999999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHh-Ccchhhhhhhhc
Q 010092 483 AGNLNISREMVRKHEVKGLMKLK-HPTRVDYLRQHM 517 (518)
Q Consensus 483 A~~LgISrerVRqie~rALkKLR-~~~~~~~L~~y~ 517 (518)
|+.||||+++|||++++|++||| ++.+...|+.|+
T Consensus 387 A~~lgiS~erVrqi~~rAl~kLR~~~~~~~~l~~~l 422 (423)
T 2a6h_F 387 GAFFGVTRERIRQIENKALRKLKYHESRTRKLRDFL 422 (423)
T ss_dssp HHSSSSCHHHHHHHHHHHHHHHHHHHHHTTSSSSCC
T ss_pred HHHHCcCHHHHHHHHHHHHHHHHhhhhhhHHHHHhh
Confidence 99999999999999999999999 888888999987
No 3
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=100.00 E-value=2.8e-41 Score=374.06 Aligned_cols=246 Identities=33% Similarity=0.539 Sum_probs=226.6
Q ss_pred HHHHHHHHcHHH---HHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHH
Q 010092 264 QVKKCLEVGRAA---RNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRH 340 (518)
Q Consensus 264 ~L~~~~~gd~~A---~e~LI~~nlrLV~siAkky~~~~~~g~~~eDLIQEG~IGLirAvekFDp~rG~kFSTYA~~wIRq 340 (518)
.+.++..|+..| ++.||..|+++|+++|++|. +++.+++||+||||+|||+++++||+.+|++|+||++||||+
T Consensus 361 Li~~~~~Gd~~A~~A~~~L~~~y~~~v~~ia~r~~---~~~~~aeDlvQE~fi~l~~a~~~fd~~~g~~Fstyl~~~irn 437 (613)
T 3iyd_F 361 INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYT---NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 437 (613)
T ss_dssp HHHTHHHHHHHHHHHHTTTTTTTTHHHHHGGGSSS---TTSSCSTTTTHHHHHHHHHHTTSCCTTSSSCSTTTHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHcCccccCcHHHHHHHHHHH
Confidence 455678899887 99999999999999999999 789999999999999999999999999999999999999999
Q ss_pred HHHHHHH-hcCCccccccccchhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhcCCccccCCCcC
Q 010092 341 AIIRSMT-VSSFTRVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHG 419 (518)
Q Consensus 341 aI~raI~-~sr~iRlP~~~~e~~~~~~~~ki~ka~~eL~~elgR~PT~eELA~~lgis~e~v~~~l~~~~~~~SLD~~~~ 419 (518)
+|.++++ +.+++|+|.|+.+ .+++++++...+.+++||.||++|||+.+|+++++++.++.....++||+.+.+
T Consensus 438 ~i~~~lr~~~r~~rip~~~~~-----~~~k~~r~~~~l~~~~gr~pt~eela~~l~~~~~~v~~~~~~~~~~~sld~~~~ 512 (613)
T 3iyd_F 438 AITRSIADQARTIRIPVHMIE-----TINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIG 512 (613)
T ss_dssp HHHHHTTTSCSSSCCCSHHHH-----TTTTTTTTTTTTTTTTCSCCCTTTTTTTSSCCSSHHHHHHHHSCCCCCSSCCCS
T ss_pred HHHHHHHhcCcceeCcHHHHH-----HHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhccCCcccCCCCC
Confidence 9999999 8899999999998 899999999999999999999999999999999999999999999999999876
Q ss_pred Cchh-hhhcccccCCCCcchhhhHHHHHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 010092 420 VTQE-EFINGITDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEV 498 (518)
Q Consensus 420 ~~~e-el~~~l~d~~~~~~ee~~~~~~l~~~L~~~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~ 498 (518)
.+.+ .+.+.+.+....+|++.+...++...|..+|+.||++++.||.|+||+++++++|++|||+.||||++||+++++
T Consensus 513 ~~~~~~l~d~i~d~~~~~p~~~~~~~e~~~~l~~aL~~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~ 592 (613)
T 3iyd_F 513 DDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEA 592 (613)
T ss_dssp SSSSCCGGGSCCCSSSCCHHHHHHHHTTSSSHHHHTTSSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHH
T ss_pred CCCCccHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHH
Confidence 5544 355556655555677777777778889999999999999999999999888999999999999999999999999
Q ss_pred HHHHHHhCcchhhhhhhhc
Q 010092 499 KGLMKLKHPTRVDYLRQHM 517 (518)
Q Consensus 499 rALkKLR~~~~~~~L~~y~ 517 (518)
+|+++||++.+...|+.|+
T Consensus 593 rAl~kLR~~~~~~~l~~~l 611 (613)
T 3iyd_F 593 KALRKLRHPSRSEVLRSFL 611 (613)
T ss_dssp HHHTTTTSCSSSCSSTTCC
T ss_pred HHHHHhhCcchhhHHHHHh
Confidence 9999999999999999886
No 4
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=100.00 E-value=5.1e-36 Score=297.11 Aligned_cols=210 Identities=31% Similarity=0.464 Sum_probs=129.2
Q ss_pred cCCcChHHHHHHhcCCCCCCChHHHHHHHHHHhHhHHHH-HHHHHH--HHH-----------------------hCCCCC
Q 010092 197 SYSTDLVSLDWKKMKIPPVLSSTEHTWLFKLMQPMKVFV-QVKEQL--QKD-----------------------LGREPT 250 (518)
Q Consensus 197 ~~~~d~~~~yl~~i~~~plLt~eEE~~L~~~iq~~~~l~-~~~~~l--~~~-----------------------l~r~p~ 250 (518)
..++|+|++||++|+++||||++||++|++.|+.+.... .+.... +.. ...+|+
T Consensus 3 ~~~~d~~~~yl~~i~~~~llt~~~e~~la~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~ 82 (245)
T 3ugo_A 3 HMTSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPK 82 (245)
T ss_dssp --CCHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTGGGCSCCCCTTCCCCCCHH
T ss_pred CCCCCcHHHHHHHcccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHhhhhhhhccchhcccccccccccch
Confidence 357899999999999999999999999999999876533 221110 000 135788
Q ss_pred HHHHHHHccCCH----HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010092 251 DVELAEATNMSA----AQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKR 326 (518)
Q Consensus 251 ~~ela~~~~~s~----~~L~~~~~gd~~A~e~LI~~nlrLV~siAkky~~~~~~g~~~eDLIQEG~IGLirAvekFDp~r 326 (518)
..+||.+.+++. ..|.+...||..|++.||..|+++|+++|++|. +++.+++||+||||+|||+|+++|||++
T Consensus 83 ~~~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~L~~~y~~lV~~ia~r~~---~~~~~aeDLvQegfi~L~~a~~~fd~~~ 159 (245)
T 3ugo_A 83 TVEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYT---GRGLSFLDLIQEGNQGLIRAVEKFEYKR 159 (245)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHGGGT---TSSSCHHHHHHHHHHHHHHHHHHCCGGG
T ss_pred hHHHHHHhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHc---CCCCcHHHHHHHHHHHHHHHHHHcCccc
Confidence 899999988753 356667889999999999999999999999999 7899999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHHHHH-hcCCccccccccchhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhC--CCHHHHHH
Q 010092 327 RFRLSTYGLFWIRHAIIRSMT-VSSFTRVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEIIQGVN--ISPERYRE 403 (518)
Q Consensus 327 G~kFSTYA~~wIRqaI~raI~-~sr~iRlP~~~~e~~~~~~~~ki~ka~~eL~~elgR~PT~eELA~~lg--is~e~v~~ 403 (518)
|++|+||++||||++|+++++ +.+.+++|.++.+ .++++.++...|...+|+.||.+|||+.|| ||+.+|..
T Consensus 160 g~~F~tya~~~ir~~i~~~ir~~~r~~r~p~~l~e-----~i~~l~~~~~~L~~~~~~~ps~~EIAe~Lg~~is~~tVk~ 234 (245)
T 3ugo_A 160 RFKFSTYATWWIRQAINRAIADQARTIRIPVHMVE-----TINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEE 234 (245)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTC-------------------------------------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhcccccccHHHHH-----HHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHH
Confidence 999999999999999999999 8889999999999 999999999999999999999999999999 99999999
Q ss_pred HHHhcCCcccc
Q 010092 404 VMKASKPILSL 414 (518)
Q Consensus 404 ~l~~~~~~~SL 414 (518)
.+..+...+||
T Consensus 235 ~l~~ar~~lsl 245 (245)
T 3ugo_A 235 TLKIAQEPVSL 245 (245)
T ss_dssp -----------
T ss_pred HHHHHhhccCC
Confidence 99988887775
No 5
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=99.97 E-value=1.4e-30 Score=250.87 Aligned_cols=224 Identities=23% Similarity=0.249 Sum_probs=185.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHhcCC
Q 010092 272 GRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSF 351 (518)
Q Consensus 272 d~~A~e~LI~~nlrLV~siAkky~~~~~~g~~~eDLIQEG~IGLirAvekFDp~rG~kFSTYA~~wIRqaI~raI~~sr~ 351 (518)
+..|++.|+..|.++|+.+|++|.++++++.+++||+|||+++||+++++||+.+|.+|+||+++||++.+.+++++..
T Consensus 10 ~~~a~~~l~~~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~d~~r~~~- 88 (239)
T 1rp3_A 10 NQIEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSLD- 88 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHHHHHHHTSS-
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC-
Confidence 3458999999999999999999974334678999999999999999999999999999999999999999999999432
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhcC--CccccCCCcCCchhhhhccc
Q 010092 352 TRVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASK--PILSLHSRHGVTQEEFINGI 429 (518)
Q Consensus 352 iRlP~~~~e~~~~~~~~ki~ka~~eL~~elgR~PT~eELA~~lgis~e~v~~~l~~~~--~~~SLD~~~~~~~eel~~~l 429 (518)
+.|.+... ...++.++...+...+|+.|+.+++|+.+|++++++..++.... ...|+|.+...+++...+.
T Consensus 89 -~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~- 161 (239)
T 1rp3_A 89 -FGSRQVRE-----KERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEVFRDFARDYSEL- 161 (239)
T ss_dssp -TTCHHHHH-----HHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred -ccchHHHH-----HHHHHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHhccCCCccccccccCCCcccccc-
Confidence 45655555 78889999999999999999999999999999999998876542 3355655432222111221
Q ss_pred ccCCCCcchhhhHHHHHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Q 010092 430 TDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPT 508 (518)
Q Consensus 430 ~d~~~~~~ee~~~~~~l~~~L~~~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~ 508 (518)
.++ ..+|++.+...+....|..+|+.||++++.||.++| .+++|++|||+.||||.++|++++++|+++||+.+
T Consensus 162 ~~~-~~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~----~~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 162 IPS-STNVEEEVIKRELTEKVKEAVSKLPEREKLVIQLIF----YEELPAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp GGG-SCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH----TSCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----hcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 222 344666677777888999999999999999999999 48999999999999999999999999999999754
No 6
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=99.96 E-value=8.2e-31 Score=252.36 Aligned_cols=222 Identities=27% Similarity=0.408 Sum_probs=51.5
Q ss_pred HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHH
Q 010092 265 VKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIR 344 (518)
Q Consensus 265 L~~~~~gd~~A~e~LI~~nlrLV~siAkky~~~~~~g~~~eDLIQEG~IGLirAvekFDp~rG~kFSTYA~~wIRqaI~r 344 (518)
+.++.+||..|++.|+..|.++|+.+|++|. ++..+++||+||||++||+++++||+.+|..|+||+++|+++.+.+
T Consensus 19 ~~~~~~gd~~a~~~l~~~~~~~v~~~~~~~~---~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~i~~~~~~d 95 (243)
T 1l0o_C 19 IRRSQEGDQEARDEIIEKNMRLVWSVVQRFL---NRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPMIIGEIQR 95 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHcCCHHHHHHHHHHhHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHH
Confidence 4445678999999999999999999999998 6778999999999999999999999999889999999999999999
Q ss_pred HHHhcCCccccccccchhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhcCCccccCCCcCCchhh
Q 010092 345 SMTVSSFTRVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEE 424 (518)
Q Consensus 345 aI~~sr~iRlP~~~~e~~~~~~~~ki~ka~~eL~~elgR~PT~eELA~~lgis~e~v~~~l~~~~~~~SLD~~~~~~~ee 424 (518)
++++...+++|.++.. ...+++++...+....|+.|+.++++..+|++.+++...+.......|++.+..+++++
T Consensus 96 ~~r~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 170 (243)
T 1l0o_C 96 FLRDDGTVKVSRSLKE-----MGNKIRKAKDELSKTRGRAPTVTEIADHLGISPEDVVLAQEAVRLPTSIHETVYENDGD 170 (243)
T ss_dssp ----CCCCTTHHHHHH-----HHHHHHHHHHHHHHHHTSCCBHHHHHHHHTSCHHHHHHHHHHHHC--------------
T ss_pred HHHhcCCccCcHHHHH-----HHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHhccccCccccccccCCc
Confidence 9995557899988777 88999999999999999999999999999999999998888777778888764322211
Q ss_pred ---hhcccccCCCCcchhhhHHHHHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 425 ---FINGITDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 425 ---l~~~l~d~~~~~~ee~~~~~~l~~~L~~~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
+.+.+ +++.....+....|..+|..||++++.||.++| .+++|++|||+.||||.++|++++++|+
T Consensus 171 ~~~~~~~~-------~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~----~~g~s~~EIA~~lgis~~tV~~~~~ra~ 239 (243)
T 1l0o_C 171 PITLLDQI-------ADADEASWFDKIALKKAIEELDERERLIVYLRY----YKDQTQSEVASRLGISQVQMSRLEKKIL 239 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchhhcc-------CcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH----hcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 11111 222333445667889999999999999999999 4899999999999999999999999999
Q ss_pred HHHh
Q 010092 502 MKLK 505 (518)
Q Consensus 502 kKLR 505 (518)
++||
T Consensus 240 ~~Lr 243 (243)
T 1l0o_C 240 QHIK 243 (243)
T ss_dssp ----
T ss_pred HHcC
Confidence 9997
No 7
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=99.86 E-value=2.2e-21 Score=181.63 Aligned_cols=175 Identities=15% Similarity=0.124 Sum_probs=133.1
Q ss_pred HHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHH
Q 010092 264 QVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAII 343 (518)
Q Consensus 264 ~L~~~~~gd~~A~e~LI~~nlrLV~siAkky~~~~~~g~~~eDLIQEG~IGLirAvekFDp~rG~kFSTYA~~wIRqaI~ 343 (518)
.+.++..||..|++.|+..|.+.|+.+|.+|. + ..+++|++||+|+.+|+++++|++.. .|.+|++.++++.+.
T Consensus 13 l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~---~-~~~aeDl~Qe~~l~~~~~~~~~~~~~--~~~~~l~~i~~n~~~ 86 (194)
T 1or7_A 13 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYV---P-SGDVPDVVQEAFIKAYRALDSFRGDS--AFYTWLYRIAVNTAK 86 (194)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTS---C-GGGHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHHHHHHc---C-HHhHHHHHHHHHHHHHHhHHhcCCcc--chHHHHHHHHHHHHH
Confidence 45667889999999999999999999999998 7 88999999999999999999999875 599999999999999
Q ss_pred HHHH-hcCCccccccccchhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhcCCccccCCCcCCch
Q 010092 344 RSMT-VSSFTRVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQ 422 (518)
Q Consensus 344 raI~-~sr~iRlP~~~~e~~~~~~~~ki~ka~~eL~~elgR~PT~eELA~~lgis~e~v~~~l~~~~~~~SLD~~~~~~~ 422 (518)
++++ ..+.... .++. ... ...++..
T Consensus 87 d~~R~~~~~~~~---------------------------------~~~~-----------~~~-----~~~~~~~----- 112 (194)
T 1or7_A 87 NYLVAQGRRPPS---------------------------------SDVD-----------AIE-----AENFESG----- 112 (194)
T ss_dssp HHHHHHTTCCTH---------------------------------HHHH-----------HHH-----HHSCCSS-----
T ss_pred HHHHHHhccCcc---------------------------------cccc-----------ccc-----ccccccc-----
Confidence 9988 3221100 0000 000 0000100
Q ss_pred hhhhcccccCCCCcchhhhHHHHHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 010092 423 EEFINGITDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLM 502 (518)
Q Consensus 423 eel~~~l~d~~~~~~ee~~~~~~l~~~L~~~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALk 502 (518)
..+.+ ..+|++.....+....|..+|..||++++.||.|+| .+++|++|||+.||+|..+|++++.+|++
T Consensus 113 ----~~~~~--~~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~----~~g~s~~EIA~~lgis~~tV~~~l~ra~~ 182 (194)
T 1or7_A 113 ----GALKE--ISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRE----LDGLSYEEIAAIMDCPVGTVRSRIFRARE 182 (194)
T ss_dssp ----CC----------CEEEHHHHHHHHHHHHHHSCHHHHHHHHHHH----TTCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred ----ccccC--CCChHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHH----HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00011 122344444456677889999999999999999999 58999999999999999999999999999
Q ss_pred HHhCcc
Q 010092 503 KLKHPT 508 (518)
Q Consensus 503 KLR~~~ 508 (518)
+||+..
T Consensus 183 ~Lr~~l 188 (194)
T 1or7_A 183 AIDNKV 188 (194)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999654
No 8
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=99.85 E-value=8.6e-22 Score=183.11 Aligned_cols=165 Identities=15% Similarity=0.112 Sum_probs=135.6
Q ss_pred HHHH-HHHHcHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHH
Q 010092 264 QVKK-CLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAI 342 (518)
Q Consensus 264 ~L~~-~~~gd~~A~e~LI~~nlrLV~siAkky~~~~~~g~~~eDLIQEG~IGLirAvekFDp~rG~kFSTYA~~wIRqaI 342 (518)
.+.+ +..||..|++.|+..|.+.|+.+|.++. ++..+++|++||+|+.+|+++++|++..| .|.+|++.++++.+
T Consensus 16 li~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~---~~~~~aeD~~Qe~~l~~~~~~~~~~~~~~-~~~~wl~~i~~n~~ 91 (184)
T 2q1z_A 16 LMRAIRDHRDEAAFAELFQHFAPKVKGFLMKSG---SVASQAEECAQDVMATVWQKAHLFDPSRA-SVATWIFTIARNRR 91 (184)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHHHSGGGCCTTTC-CHHHHHHHHHHTSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHc---CCHhHHHHHHHHHHHHHHHhhhhcCcccC-cHHHHHHHHHHHHH
Confidence 4556 6789999999999999999999999998 67889999999999999999999998876 79999999999888
Q ss_pred HHHHHh-cCCccccccccchhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhcCCccccCCCcCCc
Q 010092 343 IRSMTV-SSFTRVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVT 421 (518)
Q Consensus 343 ~raI~~-sr~iRlP~~~~e~~~~~~~~ki~ka~~eL~~elgR~PT~eELA~~lgis~e~v~~~l~~~~~~~SLD~~~~~~ 421 (518)
.+++++ .+... ++..
T Consensus 92 ~d~~R~~~~~~~------------------------------------------------------------~~~~---- 107 (184)
T 2q1z_A 92 IDGLRKDRQPEP------------------------------------------------------------EDLF---- 107 (184)
T ss_dssp CTTTCSSSCCCC------------------------------------------------------------CCCC----
T ss_pred HHHHHhhccccc------------------------------------------------------------cccc----
Confidence 777662 11100 0000
Q ss_pred hhhhhcccccCCCCcchhhhHHHHHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 422 QEEFINGITDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 422 ~eel~~~l~d~~~~~~ee~~~~~~l~~~L~~~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
. ..+...++++.....+....|..+|..||++++.||.++| .+++|++|||+.||+|..+|++++++|+
T Consensus 108 ---~----~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~----~~g~s~~eIA~~lgis~~tV~~~l~ra~ 176 (184)
T 2q1z_A 108 ---W----GPDSEPDQADVYEMQQENARLGRAIARLPEAQRALIERAF----FGDLTHRELAAETGLPLGTIKSRIRLAL 176 (184)
T ss_dssp ---C----CSSCCCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH----HSCCSSCCSTTTCCCCCHHHHHHHHHHH
T ss_pred ---c----cCCCCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 0 0111223555566667778899999999999999999998 4899999999999999999999999999
Q ss_pred HHHhCc
Q 010092 502 MKLKHP 507 (518)
Q Consensus 502 kKLR~~ 507 (518)
++||+.
T Consensus 177 ~~Lr~~ 182 (184)
T 2q1z_A 177 DRLRQH 182 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999964
No 9
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=99.81 E-value=1.2e-19 Score=164.23 Aligned_cols=152 Identities=14% Similarity=0.136 Sum_probs=102.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHH-hcCCccccccccchhhHHHHHHHHHHHHHHHH
Q 010092 301 GPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMT-VSSFTRVPFGLESTSIMQVRGEIQRAKLELLF 379 (518)
Q Consensus 301 g~~~eDLIQEG~IGLirAvekFDp~rG~kFSTYA~~wIRqaI~raI~-~sr~iRlP~~~~e~~~~~~~~ki~ka~~eL~~ 379 (518)
|.+++|++||||++||+++.+||+.+ .+|.||+++++++.+.++++ +.+..+.+..
T Consensus 1 g~daeDl~Qe~~~~l~~~~~~~~~~~-~~f~~~l~~i~~n~~~d~~r~~~~~~~~~~~---------------------- 57 (164)
T 3mzy_A 1 GAEKEDLVQEGILGLLKAIKFYDETK-SSFSSFAFLCIRREMISAIRKANTQKHMVLN---------------------- 57 (164)
T ss_dssp ----CTTHHHHHHHHHHHHHHCCTTT-SCHHHHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCccC-CChHHHhHHHHHHHHHHHHHHhhcccchhhH----------------------
Confidence 56899999999999999999999987 68999999999999999998 3322111110
Q ss_pred HhCCCCCHHHHHHHhCCCHHHHHHHHHhcCCccccCCCcCCchh-hhhc---ccccCCCCcchhhhHHHHHHHHHHHHHh
Q 010092 380 ELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQE-EFIN---GITDVDGVENENQRQPALLRLALDDVLD 455 (518)
Q Consensus 380 elgR~PT~eELA~~lgis~e~v~~~l~~~~~~~SLD~~~~~~~e-el~~---~l~d~~~~~~ee~~~~~~l~~~L~~~L~ 455 (518)
..++++.....+.. ++.+ ........++++.+...+....|..+|.
T Consensus 58 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~l~ 107 (164)
T 3mzy_A 58 ------------------------------EALKTNAILEDSAYFDDEGHNINNYKSSESNPEEAYLLKEEIEEFKKFSE 107 (164)
T ss_dssp --------------------------------------------------------------CHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------HHhhhhhhhccCCCCCcccchhhhhcccCCCHHHHHHHHHHHHHHHHHHH
Confidence 00011110000000 0000 0011222345666777778888999999
Q ss_pred -cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchh
Q 010092 456 -SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRV 510 (518)
Q Consensus 456 -~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~ 510 (518)
.||++++.||. +| .+++|++|||+.||+|.++|++++++|+++||+.+..
T Consensus 108 ~~L~~~~r~v~~-~~----~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~ 158 (164)
T 3mzy_A 108 NNFSKFEKEVLT-YL----IRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIKE 158 (164)
T ss_dssp HHSCHHHHHHHH-HH----TTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHH-HH----HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 66 4899999999999999999999999999999976654
No 10
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=99.62 E-value=1.1e-15 Score=157.35 Aligned_cols=81 Identities=40% Similarity=0.686 Sum_probs=76.7
Q ss_pred HHHHHHHHcH---HHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHH
Q 010092 264 QVKKCLEVGR---AARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRH 340 (518)
Q Consensus 264 ~L~~~~~gd~---~A~e~LI~~nlrLV~siAkky~~~~~~g~~~eDLIQEG~IGLirAvekFDp~rG~kFSTYA~~wIRq 340 (518)
.+.++..|+. .|++.||..|+++|+++|++|. +++.+++||+||||+|||+++++|++.+|++|+||++|||++
T Consensus 252 l~~~~~~gd~~~~~A~~~L~~~~~~~v~~~a~~~~---~~~~~aeDlvQe~~i~l~~a~~~f~~~~g~~f~twl~~iirn 328 (339)
T 1sig_A 252 INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYT---NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 328 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTST---TSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHH
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHh---cCCCCHhHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHH
Confidence 3566778998 9999999999999999999999 789999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 010092 341 AIIRSMT 347 (518)
Q Consensus 341 aI~raI~ 347 (518)
.|.++++
T Consensus 329 ~~~~~lr 335 (339)
T 1sig_A 329 AITRSIA 335 (339)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999998
No 11
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=99.61 E-value=1.7e-17 Score=152.14 Aligned_cols=141 Identities=10% Similarity=0.041 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHhcCCcccc
Q 010092 276 RNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVP 355 (518)
Q Consensus 276 ~e~LI~~nlrLV~siAkky~~~~~~g~~~eDLIQEG~IGLirAvekFDp~rG~kFSTYA~~wIRqaI~raI~~sr~iRlP 355 (518)
++.|+..|.+.|+.+|.++. ++..+++|++||+|+.+|++.++|++.. .|.+|++..+++.+.++++...
T Consensus 3 f~~l~~~~~~~l~~~~~~~~---~~~~~AeDlvQe~fl~~~~~~~~~~~~~--~~~~wl~~ia~n~~~d~~R~~~----- 72 (157)
T 2lfw_A 3 LGQQLAPHLPFLRRYGRALT---GSQNQGDKYVRATLEAIVAAPDQFPRDV--DPRLGLYRMFQGIWASANADGE----- 72 (157)
T ss_dssp GGGGTGGGGGGGTTTGGGTT---SCHHHHHHHHHHHHHTTTTCGGGCCCSS--CTTHHHHHHHHHHHHHHTTTTS-----
T ss_pred HHHHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHhHHHcCCCC--cHHHHHHHHHHHHHHHHhhccC-----
Confidence 56788999999999999998 6788999999999999999999999763 6999999999998887765200
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhcCCccccCCCcCCchhhhhcccccCCCC
Q 010092 356 FGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGV 435 (518)
Q Consensus 356 ~~~~e~~~~~~~~ki~ka~~eL~~elgR~PT~eELA~~lgis~e~v~~~l~~~~~~~SLD~~~~~~~eel~~~l~d~~~~ 435 (518)
. . +.+ .+ .
T Consensus 73 ----~-------------------------------------------------~----~~~------------~e-~-- 80 (157)
T 2lfw_A 73 ----A-------------------------------------------------Q----TSQ------------SD-A-- 80 (157)
T ss_dssp ----C-------------------------------------------------C----CCC------------CS-C--
T ss_pred ----c-------------------------------------------------c----cCC------------cc-h--
Confidence 0 0 000 00 0
Q ss_pred cchhhhHHHHHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchh
Q 010092 436 ENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRV 510 (518)
Q Consensus 436 ~~ee~~~~~~l~~~L~~~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~ 510 (518)
. +....|..+|..||++++.||.|+| .+++|++|||+.||||..+|++.+.+|+++||+....
T Consensus 81 -~-------~~~~~l~~~l~~Lp~~~r~vl~L~~----~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~ 143 (157)
T 2lfw_A 81 -E-------GTEAVARARLARMTPLSRQALLLTA----MEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRA 143 (157)
T ss_dssp -S-------SSSSTTTTTTTTSCTTHHHHHTTTS----SSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred -H-------HHHHHHHHHHHhCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 0 0112466788999999999999998 5899999999999999999999999999999986543
No 12
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=99.52 E-value=2.9e-14 Score=122.23 Aligned_cols=77 Identities=40% Similarity=0.625 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhhhhhhc
Q 010092 441 RQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYLRQHM 517 (518)
Q Consensus 441 ~~~~~l~~~L~~~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~~~L~~y~ 517 (518)
+...++...|..+|+.|||+|+.||.++||++|.+++|++|||+.||+|.++|++++.+|+++||...+...|+.|+
T Consensus 4 ~~~~el~~~l~~aL~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~~~l~~~~ 80 (99)
T 3t72_q 4 ATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSGS 80 (99)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888999999999999999999999999889999999999999999999999999999999999999999986
No 13
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.48 E-value=2.2e-14 Score=144.28 Aligned_cols=145 Identities=8% Similarity=-0.079 Sum_probs=115.8
Q ss_pred HHHcHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHh
Q 010092 269 LEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTV 348 (518)
Q Consensus 269 ~~gd~~A~e~LI~~nlrLV~siAkky~~~~~~g~~~eDLIQEG~IGLirAvekFDp~rG~kFSTYA~~wIRqaI~raI~~ 348 (518)
.+|+..+|+.|+..|.+.++.+|.+|. ++..+++|++||.|+.+|+...+|++. ..|.+|++..+++.+.++++.
T Consensus 16 ~~g~~~~f~~l~~~~~~~l~~~a~~~~---~~~~~AeD~vQe~fl~~~~~~~~~~~~--~~~~~wL~~ia~n~~~d~~r~ 90 (286)
T 3n0r_A 16 PRGSEMHLLARLAPHLPYIRRYARALT---GDQATGDHYVRVALEALAAGELVLDAN--LSPRVALYRVFHAIWLSSGAQ 90 (286)
T ss_dssp ----CCCHHHHHGGGHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHTTSSCCCSS--SCHHHHHHHHHHHHHSCTTC-
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHHHh---CCHhhHHHHHHHHHHHHHhCchhcCCC--cChHHHHHHHHHHHHHhhccc
Confidence 467888999999999999999999999 778899999999999999999999975 369999998888876544321
Q ss_pred cCCccccccccchhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhcCCccccCCCcCCchhhhhcc
Q 010092 349 SSFTRVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFING 428 (518)
Q Consensus 349 sr~iRlP~~~~e~~~~~~~~ki~ka~~eL~~elgR~PT~eELA~~lgis~e~v~~~l~~~~~~~SLD~~~~~~~eel~~~ 428 (518)
.. ...
T Consensus 91 ~~-----------------------------------------------------------------~~~---------- 95 (286)
T 3n0r_A 91 LE-----------------------------------------------------------------VGH---------- 95 (286)
T ss_dssp --------------------------------------------------------------------CC----------
T ss_pred cc-----------------------------------------------------------------cCC----------
Confidence 00 000
Q ss_pred cccCCCCcchhhhHHHHHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Q 010092 429 ITDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPT 508 (518)
Q Consensus 429 l~d~~~~~~ee~~~~~~l~~~L~~~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~ 508 (518)
.... + ....|..+|+.||+++|.||.|+| .+++|++|||+.+|+|..+|+....+|+..|+...
T Consensus 96 -~~~~----~-------~~~~l~~al~~Lp~~~R~v~~L~~----~eg~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~l 159 (286)
T 3n0r_A 96 -DQGL----H-------AGDDAAQRLMRIAPRSRQAFLLTA----LEGFTPTEAAQILDCDFGEVERLIGDAQAEIDAEL 159 (286)
T ss_dssp -CCCC----C-------TTSHHHHHHHHHSCHHHHHHHHHH----TTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred -Cccc----c-------hHHHHHHHHHhCCHHHeeEEEEEe----eCCCCHHHHHHHhCcCHHHHHHHHHHHHhhhhccC
Confidence 0000 0 012488899999999999999999 68999999999999999999999999999999764
Q ss_pred h
Q 010092 509 R 509 (518)
Q Consensus 509 ~ 509 (518)
.
T Consensus 160 ~ 160 (286)
T 3n0r_A 160 A 160 (286)
T ss_dssp C
T ss_pred C
Confidence 3
No 14
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=99.31 E-value=2.2e-12 Score=102.12 Aligned_cols=65 Identities=42% Similarity=0.711 Sum_probs=61.4
Q ss_pred HHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhhhhhhc
Q 010092 453 VLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYLRQHM 517 (518)
Q Consensus 453 ~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~~~L~~y~ 517 (518)
+|+.||++|+.||.++|||+|.+++|++|||+.||+|.++|++++.+|+++||.......+..|+
T Consensus 2 ~l~~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~~~~~~~~~ 66 (68)
T 2p7v_B 2 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 66 (68)
T ss_dssp CSCCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCGGGGGSCTT
T ss_pred HHHcCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36789999999999999998889999999999999999999999999999999999999888875
No 15
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=99.31 E-value=5.2e-12 Score=105.03 Aligned_cols=70 Identities=41% Similarity=0.735 Sum_probs=64.9
Q ss_pred HHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhhhhhhc
Q 010092 448 LALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYLRQHM 517 (518)
Q Consensus 448 ~~L~~~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~~~L~~y~ 517 (518)
..|..+|+.||++++.||.++|+|+|.+++|++|||+.||+|.++|++++.+|+++||.......+..|+
T Consensus 10 ~~l~~~l~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~~~~~~~~ 79 (87)
T 1tty_A 10 EELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLL 79 (87)
T ss_dssp SHHHHHHTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4588899999999999999999988889999999999999999999999999999999998888877764
No 16
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=99.30 E-value=1.3e-12 Score=104.86 Aligned_cols=68 Identities=35% Similarity=0.565 Sum_probs=55.6
Q ss_pred HHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHh-Ccchhhhhhhhc
Q 010092 450 LDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK-HPTRVDYLRQHM 517 (518)
Q Consensus 450 L~~~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR-~~~~~~~L~~y~ 517 (518)
|..+|+.||++|+.||.++|+|+|.+++|++|||+.||+|.++|++++.+|+++|| .......|+.|+
T Consensus 4 l~~~l~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~~~~~~~~~ 72 (73)
T 1ku3_A 4 LEKALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFL 72 (73)
T ss_dssp CSSSTTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhhHHHHHHhh
Confidence 45667899999999999999988888999999999999999999999999999999 998888888885
No 17
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=99.16 E-value=8.9e-11 Score=98.28 Aligned_cols=73 Identities=21% Similarity=0.271 Sum_probs=66.3
Q ss_pred CCcchhhhHHHHHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchh
Q 010092 434 GVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRV 510 (518)
Q Consensus 434 ~~~~ee~~~~~~l~~~L~~~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~ 510 (518)
..++++.+...+....|..+|..||++++.||.|+| .+++|++|||+.||||..+|++++.+|+++||..+..
T Consensus 15 ~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~----~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~ 87 (92)
T 3hug_A 15 EQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSY----YRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQE 87 (92)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH----TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 345777788888999999999999999999999998 5899999999999999999999999999999976554
No 18
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=98.90 E-value=2.8e-09 Score=83.65 Aligned_cols=64 Identities=8% Similarity=-0.021 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhh
Q 010092 445 LLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDY 512 (518)
Q Consensus 445 ~l~~~L~~~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~~~ 512 (518)
+....|..+|+.||++++.||.++| .+++|++|||+.||+|..+|+++.++|+++|+.......
T Consensus 4 e~~~~l~~~l~~L~~~~r~il~l~~----~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~~~~ 67 (70)
T 2o8x_A 4 EDLVEVTTMIADLTTDQREALLLTQ----LLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDD 67 (70)
T ss_dssp HHHHHHHTTTTSSCHHHHHHHHHHH----TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhhccc
Confidence 3456788899999999999999998 478999999999999999999999999999998776544
No 19
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=98.73 E-value=1.1e-08 Score=83.73 Aligned_cols=75 Identities=13% Similarity=0.060 Sum_probs=68.6
Q ss_pred HHHHcHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHH
Q 010092 268 CLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMT 347 (518)
Q Consensus 268 ~~~gd~~A~e~LI~~nlrLV~siAkky~~~~~~g~~~eDLIQEG~IGLirAvekFDp~rG~kFSTYA~~wIRqaI~raI~ 347 (518)
+..|+..|++.|+..|.+.++.+|.++. ++..+++|++||+|+.+|+..+.|++. ..|.+|++..+++.+.++++
T Consensus 6 ~~~g~~~af~~l~~~~~~~l~~~~~~~~---~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~~R 80 (87)
T 1h3l_A 6 STAERSARFERDALEFLDQMYSAALRMT---RNPADAEDLVQETYAKAYASFHQFREG--TNLKAWLYRILTNTFINSYR 80 (87)
T ss_dssp CHHHHHHHHHHHHHHTHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHGGGCCSS--SCHHHHHHHHHHHHHHHTCC
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999998 678899999999999999999999975 37999999999999988776
No 20
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=98.68 E-value=4.5e-08 Score=85.43 Aligned_cols=66 Identities=21% Similarity=0.135 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHH-hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchh
Q 010092 441 RQPALLRLALDDVL-DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRV 510 (518)
Q Consensus 441 ~~~~~l~~~L~~~L-~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~ 510 (518)
++..+....+..+| ..||++++.||.++| .+++|++|||+.||+|..+|+++.++|+++||.....
T Consensus 9 ~e~~~~~~~l~~~l~~~L~~~~r~vl~l~~----~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~ 75 (113)
T 1xsv_A 9 LVKTLRMNYLFDFYQSLLTNKQRNYLELFY----LEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKK 75 (113)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHHHH----TSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667888999 999999999999998 5899999999999999999999999999999976543
No 21
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=98.67 E-value=3.8e-08 Score=84.29 Aligned_cols=77 Identities=21% Similarity=0.160 Sum_probs=68.8
Q ss_pred HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHH
Q 010092 265 VKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIR 344 (518)
Q Consensus 265 L~~~~~gd~~A~e~LI~~nlrLV~siAkky~~~~~~g~~~eDLIQEG~IGLirAvekFDp~rG~kFSTYA~~wIRqaI~r 344 (518)
+..+..|+..|++.|+..|.+.++.+|.++ . +..+++|++||+|+.+|+.+.+|++. ..|.+|++..+++.+.+
T Consensus 15 ~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~-~---~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d 88 (112)
T 2o7g_A 15 ALSAAKGNGRALEAFIKATQQDVWRFVAYL-S---DVGSADDLTQETFLRAIGAIPRFSAR--SSARTWLLAIARHVVAD 88 (112)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-S---CHHHHHHHHHHHHHHHHHHGGGCCCS--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHh-C---CHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHH
Confidence 455678999999999999999999999987 3 56789999999999999999999964 36999999999999998
Q ss_pred HHH
Q 010092 345 SMT 347 (518)
Q Consensus 345 aI~ 347 (518)
+++
T Consensus 89 ~~R 91 (112)
T 2o7g_A 89 HIR 91 (112)
T ss_dssp HTC
T ss_pred HHH
Confidence 887
No 22
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=98.59 E-value=3.2e-08 Score=82.47 Aligned_cols=64 Identities=19% Similarity=0.128 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhh
Q 010092 444 ALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDY 512 (518)
Q Consensus 444 ~~l~~~L~~~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~~~ 512 (518)
......+..++..|+++|+.||.+++ +++|.+|||+.||+|..+|+.+..++++||+...+.+.
T Consensus 17 ~~~~~~l~~~l~~Lt~~e~~vl~l~~-----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l 80 (91)
T 2rnj_A 17 GSHMKKRAELYEMLTEREMEILLLIA-----KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQA 80 (91)
T ss_dssp --------CTGGGCCSHHHHHHHHHH-----TTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCCSSHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHH
Confidence 34456688889999999999999965 78999999999999999999999999999998766553
No 23
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=98.57 E-value=1.2e-07 Score=76.17 Aligned_cols=61 Identities=21% Similarity=0.229 Sum_probs=54.1
Q ss_pred HHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhhh
Q 010092 448 LALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYL 513 (518)
Q Consensus 448 ~~L~~~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~~~L 513 (518)
..|..++..||++|+.||.+++ +++|.+|||+.||+|..+|+++..++++||+...+.+.+
T Consensus 8 ~~l~~~l~~L~~~e~~vl~l~~-----~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~~~l~ 68 (79)
T 1x3u_A 8 NDIRARLQTLSERERQVLSAVV-----AGLPNKSIAYDLDISPRTVEVHRANVMAKMKAKSLPHLV 68 (79)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHT-----TTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 4577888999999999999954 789999999999999999999999999999987765543
No 24
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=98.55 E-value=1e-07 Score=80.34 Aligned_cols=63 Identities=19% Similarity=0.143 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhh
Q 010092 445 LLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDY 512 (518)
Q Consensus 445 ~l~~~L~~~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~~~ 512 (518)
+....|..+|..|+++|++||.+++ +++|.+|||+.||+|..+|+.++.++++||+...+.+.
T Consensus 16 ~~~~~l~~~l~~Lt~~e~~vl~l~~-----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l 78 (95)
T 3c57_A 16 PRGSHMQDPLSGLTDQERTLLGLLS-----EGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQA 78 (95)
T ss_dssp -----------CCCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCC-
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHH
Confidence 3455688889999999999999975 78999999999999999999999999999998766543
No 25
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=98.49 E-value=2.3e-07 Score=81.01 Aligned_cols=61 Identities=23% Similarity=0.165 Sum_probs=54.3
Q ss_pred HHHHHHHHH-hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchh
Q 010092 446 LRLALDDVL-DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRV 510 (518)
Q Consensus 446 l~~~L~~~L-~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~ 510 (518)
....+..++ ..|||+++.||.++| .+++|++|||+.||+|..+|+++.++|+++||.....
T Consensus 11 ~~~~l~~~l~~~L~~~~r~vl~l~y----~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~ 72 (113)
T 1s7o_A 11 RMNALFEFYAALLTDKQMNYIELYY----ADDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEMK 72 (113)
T ss_dssp HHHHHHHHHGGGSCHHHHHHHHHHH----HTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788 899999999999998 4899999999999999999999999999999976543
No 26
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=98.47 E-value=7.6e-08 Score=82.45 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=54.0
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHhHHhcCCC---CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch
Q 010092 445 LLRLALDDVL-DSLKPKESLVIRQRFGLDG---KGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTR 509 (518)
Q Consensus 445 ~l~~~L~~~L-~~L~~rEr~VL~lryGL~~---~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~ 509 (518)
...+.+..++ +.|+++|+.+|.+||||.+ ..++|+.|||+.+|+|+++|+++ +++|++|....+
T Consensus 23 ~~~~~l~~~l~~lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~~~~k 90 (101)
T 1jhg_A 23 YQNDLHLPLLNLMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAPVELR 90 (101)
T ss_dssp HHTTCHHHHHHHHSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSCHHHH
T ss_pred CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHccHHHH
Confidence 3344566777 5699999999999999975 45699999999999999999999 899999986443
No 27
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=98.45 E-value=2.1e-07 Score=76.22 Aligned_cols=60 Identities=23% Similarity=0.277 Sum_probs=51.3
Q ss_pred HHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhhh
Q 010092 449 ALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYL 513 (518)
Q Consensus 449 ~L~~~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~~~L 513 (518)
.+..++..|+++|++||.+++ +++|.+|||+.||+|..+|+.+..++++||+...+.+..
T Consensus 14 ~~~~~~~~Lt~~e~~vl~l~~-----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~ 73 (82)
T 1je8_A 14 TTERDVNQLTPRERDILKLIA-----QGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAA 73 (82)
T ss_dssp ---CCGGGSCHHHHHHHHHHT-----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 356677899999999999954 789999999999999999999999999999987765543
No 28
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=98.29 E-value=1e-06 Score=69.58 Aligned_cols=59 Identities=29% Similarity=0.241 Sum_probs=49.9
Q ss_pred HHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhhh
Q 010092 450 LDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYL 513 (518)
Q Consensus 450 L~~~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~~~L 513 (518)
+...+..|+++|+.||.+.+ +++|.+|||+.||+|..+|+++..+++++|+...+.+.+
T Consensus 5 ~~~~~~~L~~~e~~il~~~~-----~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~~~ 63 (74)
T 1fse_A 5 EFQSKPLLTKREREVFELLV-----QDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAV 63 (74)
T ss_dssp ---CCCCCCHHHHHHHHHHT-----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHH
Confidence 34456789999999999954 789999999999999999999999999999987765543
No 29
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.07 E-value=5.5e-06 Score=81.52 Aligned_cols=159 Identities=10% Similarity=-0.000 Sum_probs=110.6
Q ss_pred HHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHH----HHHHHHHHHHHHhcCCCCCCccchHHHHHHH
Q 010092 264 QVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLC----QAGVKGLITAIDRFEPKRRFRLSTYGLFWIR 339 (518)
Q Consensus 264 ~L~~~~~gd~~A~e~LI~~nlrLV~siAkky~~~~~~g~~~eDLI----QEG~IGLirAvekFDp~rG~kFSTYA~~wIR 339 (518)
.+.++-.+|..+++.+...+.+++..+..... .......|+. ||.++.+|+....|++.. .|.+|++..++
T Consensus 87 ll~~i~p~D~~~~~~~~~~~~~fi~~l~~~~~---~~~~~~~dl~~~~~qe~fl~~~~~~~~~~~~~--~~~~WL~~ia~ 161 (258)
T 3clo_A 87 IYRRIHPEDLVEKRLMEYKFFQKTFSMSPGER---LKYRGRCRLRMMNEKGVYQYIDNLVQIMQNTP--AGNVWLIFCLY 161 (258)
T ss_dssp HHTTBCHHHHHHHHHHHHHHHHHHTTSCHHHH---TTEEEEEEEEEECTTSCEEEEEEEEEEEEECT--TSCEEEEEEEE
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHhcCHHhc---cCCeeeEEeecCCcCHHHHHHHHhHHhcCCCC--chHHHHHHHHH
Confidence 34445467788999999999999999988765 4566778886 999999999999998654 68888764333
Q ss_pred HHHHHHHHhcCCccccccccchhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhcCCccccCCCcC
Q 010092 340 HAIIRSMTVSSFTRVPFGLESTSIMQVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHG 419 (518)
Q Consensus 340 qaI~raI~~sr~iRlP~~~~e~~~~~~~~ki~ka~~eL~~elgR~PT~eELA~~lgis~e~v~~~l~~~~~~~SLD~~~~ 419 (518)
+.+.+..+. . .+..
T Consensus 162 n~~~d~~r~-----------~----------------------------------------------------~~~~--- 175 (258)
T 3clo_A 162 SLSADQRPE-----------Q----------------------------------------------------GIYA--- 175 (258)
T ss_dssp EECSCCCCC-----------S----------------------------------------------------SCCC---
T ss_pred HHHcchhhh-----------h----------------------------------------------------HHHH---
Confidence 322111000 0 0000
Q ss_pred CchhhhhcccccCCCCcchhhhHHHHHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 420 VTQEEFINGITDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 420 ~~~eel~~~l~d~~~~~~ee~~~~~~l~~~L~~~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.+... ..... .... .+..++..||+++++||.|++ +++|.+|||+.||+|..||+.+.+|
T Consensus 176 ----~~~~~-~~~~~--~~~~--------~~~~~~~~L~~~erevl~L~~-----~G~s~~EIA~~L~iS~~TVk~~l~r 235 (258)
T 3clo_A 176 ----TITQM-ERGEV--ETLS--------LSEEHRNILSEREKEILRCIR-----KGLSSKEIAATLYISVNTVNRHRQN 235 (258)
T ss_dssp ----EEEET-TTTEE--EECC--------CHHHHTTSSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred ----HHHhh-ccccc--ccch--------hhHHHHccCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 00000 00000 0000 145667899999999999986 7999999999999999999999999
Q ss_pred HHHHHhCcchhhhh
Q 010092 500 GLMKLKHPTRVDYL 513 (518)
Q Consensus 500 ALkKLR~~~~~~~L 513 (518)
|++|||...+.+..
T Consensus 236 a~~kL~~~~~~~~~ 249 (258)
T 3clo_A 236 ILEKLSVGNSIEAC 249 (258)
T ss_dssp HHHHTTCSSHHHHH
T ss_pred HHHHHcCCCHHHHH
Confidence 99999987665443
No 30
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=97.98 E-value=1.4e-05 Score=66.64 Aligned_cols=55 Identities=25% Similarity=0.283 Sum_probs=47.6
Q ss_pred HHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhh
Q 010092 453 VLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDY 512 (518)
Q Consensus 453 ~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~~~ 512 (518)
....|+++|++||.+.+ +++|.+|||+.||||..+|+.+..++++||.-..+.+-
T Consensus 26 ~~~~Lt~rE~~Vl~l~~-----~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~~r~~l 80 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE-----KGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEA 80 (90)
T ss_dssp ---CCCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred cccCCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHH
Confidence 45689999999999988 78999999999999999999999999999987665543
No 31
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=97.91 E-value=1.5e-05 Score=60.67 Aligned_cols=49 Identities=22% Similarity=0.198 Sum_probs=43.6
Q ss_pred HHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhh
Q 010092 459 PKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDY 512 (518)
Q Consensus 459 ~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~~~ 512 (518)
|+|++|+.+.+ +++|.+|||+.||+|..+|+.+..++++||+...+.+-
T Consensus 1 ~re~~vl~l~~-----~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~l 49 (61)
T 2jpc_A 1 LRERQVLKLID-----EGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTEL 49 (61)
T ss_dssp CHHHHHHHHHH-----TSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred CHHHHHHHHHH-----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCCCCHHHH
Confidence 47999999943 79999999999999999999999999999998766543
No 32
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=97.89 E-value=2.1e-05 Score=66.95 Aligned_cols=53 Identities=30% Similarity=0.321 Sum_probs=47.7
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhh
Q 010092 455 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDY 512 (518)
Q Consensus 455 ~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~~~ 512 (518)
..|+++|++||.+.+ +++|.+|||+.||||..+|+....++++||.-..+.+-
T Consensus 33 ~~Lt~re~~Vl~l~~-----~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~~r~el 85 (99)
T 1p4w_A 33 KRLSPKESEVLRLFA-----EGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIAL 85 (99)
T ss_dssp SSCCHHHHHHHHHHH-----HTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred CCCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHH
Confidence 569999999999966 68999999999999999999999999999987766543
No 33
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=97.38 E-value=0.00031 Score=67.85 Aligned_cols=52 Identities=21% Similarity=0.138 Sum_probs=47.2
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhh
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDY 512 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~~~ 512 (518)
.|+++|++||.+.+ +++|.+|||+.||||..||+.+..++++||.-..+.+.
T Consensus 175 ~Lt~~e~~vl~~~~-----~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~~~~ 226 (236)
T 2q0o_A 175 MLSPREMLCLVWAS-----KGKTASVTANLTGINARTVQHYLDKARAKLDAESVPQL 226 (236)
T ss_dssp SCCHHHHHHHHHHH-----TTCCHHHHHHHHCCCHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCHHHH
Confidence 59999999999966 79999999999999999999999999999987766543
No 34
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=97.34 E-value=0.00035 Score=67.37 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=46.9
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhh
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDY 512 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~~~ 512 (518)
.||++|++||.+.+ +++|.+|||+.||+|..||+.++.++++||.-..+.+.
T Consensus 173 ~Lt~~e~~vl~~~~-----~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~~~~ 224 (234)
T 1l3l_A 173 WLDPKEATYLRWIA-----VGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHL 224 (234)
T ss_dssp CCCHHHHHHHHHHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCHHHH
Confidence 49999999999965 79999999999999999999999999999987666543
No 35
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=97.21 E-value=0.00048 Score=66.81 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=47.5
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhh
Q 010092 455 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDY 512 (518)
Q Consensus 455 ~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~~~ 512 (518)
..||++|++||.+.. +++|.+|||+.||||..||+.+..++++||.-..+.+-
T Consensus 174 ~~Lt~re~~vl~~~~-----~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~~~~ 226 (237)
T 3szt_A 174 VRLTARETEMLKWTA-----VGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEA 226 (237)
T ss_dssp CCCCHHHHHHHHHHH-----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred CCCCHHHHHHHHHHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCHHHH
Confidence 369999999999976 79999999999999999999999999999987665543
No 36
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=97.13 E-value=0.00061 Score=67.39 Aligned_cols=51 Identities=29% Similarity=0.245 Sum_probs=47.0
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhh
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVD 511 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~~ 511 (518)
.|+++|++||.+.. +++|.+|||+.||||..||+.++.++++||.-..+.+
T Consensus 197 ~Lt~re~~vl~~~~-----~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~~~~~~ 247 (265)
T 3qp6_A 197 PLSQREYDIFHWMS-----RGKTNWEIATILNISERTVKFHVANVIRKLNANNRTH 247 (265)
T ss_dssp CCCHHHHHHHHHHH-----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHH
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCHHH
Confidence 59999999999987 7999999999999999999999999999998766544
No 37
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=96.84 E-value=0.0013 Score=46.60 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=32.6
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.|++.++..+...| .+++|..+||+.||||+.+|+.++.+
T Consensus 5 ~l~~~~~~~i~~~~----~~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMK----LLNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 47888886655555 36899999999999999999988754
No 38
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=96.71 E-value=0.006 Score=56.21 Aligned_cols=58 Identities=24% Similarity=0.330 Sum_probs=49.6
Q ss_pred HHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhh
Q 010092 450 LDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDY 512 (518)
Q Consensus 450 L~~~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~~~ 512 (518)
+...+..|+++|++|+.+.. .++|.++||+.||+|..+|+.+..++++||....+.+.
T Consensus 136 ~~~~~~~Lt~rE~~vl~~l~-----~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~~~~~~~~ 193 (208)
T 1yio_A 136 LEQLFSSLTGREQQVLQLTI-----RGLMNKQIAGELGIAEVTVKVHRHNIMQKLNVRSLANL 193 (208)
T ss_dssp HHHHHHTSCHHHHHHHHHHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHH-----cCCcHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCHHHH
Confidence 34455689999999998765 67999999999999999999999999999987655543
No 39
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=96.57 E-value=0.0049 Score=52.60 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=42.4
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 505 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR 505 (518)
.+++.-..|-.++| .+++|..|||+.||+|+.+|.+++.+|...+-
T Consensus 18 ~~~~~~~~~A~lyY----v~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 18 EVGQQTIEIARGVL----VDGKPQATFATSLGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp CCCHHHHHHHHHHH----TTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH----HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 58888899999999 68999999999999999999999999998763
No 40
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=96.31 E-value=0.0023 Score=47.39 Aligned_cols=39 Identities=21% Similarity=0.064 Sum_probs=30.0
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 457 LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
+++..+.|+.++. .++|..|||+.||||+.+|++++.+|
T Consensus 17 ~~~~~~~i~~l~~-----~g~s~~eIA~~lgis~~TV~~~l~~a 55 (55)
T 2x48_A 17 EDDLVSVAHELAK-----MGYTVQQIANALGVSERKVRRYLESC 55 (55)
T ss_dssp HHHHHHHHHHHHH-----TTCCHHHHHHHHTSCHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHhC
Confidence 3445566666643 68899999999999999999987654
No 41
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=96.19 E-value=0.01 Score=55.06 Aligned_cols=52 Identities=27% Similarity=0.337 Sum_probs=46.6
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhh
Q 010092 455 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVD 511 (518)
Q Consensus 455 ~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~~ 511 (518)
..|+++|.+|+.+.. +++|.+|||+.+++|..||+.+..+.++||.-..+.+
T Consensus 153 ~~Lt~rE~~vl~~l~-----~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~~~r~~ 204 (215)
T 1a04_A 153 NQLTPRERDILKLIA-----QGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVE 204 (215)
T ss_dssp GGSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCSHHH
T ss_pred cCCCHHHHHHHHHHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHcCCCCHHH
Confidence 369999999998876 6889999999999999999999999999998766554
No 42
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=95.78 E-value=0.015 Score=54.65 Aligned_cols=52 Identities=19% Similarity=0.172 Sum_probs=45.9
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhh
Q 010092 455 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVD 511 (518)
Q Consensus 455 ~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~~ 511 (518)
..|+++|.+||.+-. +++|.+|||+.+++|..||+.+..+.++||.-..+.+
T Consensus 148 ~~LT~rE~~vL~~l~-----~g~s~~eIa~~l~is~~TV~~hi~~l~~KL~~~~r~~ 199 (225)
T 3c3w_A 148 SGLTDQERTLLGLLS-----EGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQ 199 (225)
T ss_dssp TTSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCCSSCH
T ss_pred CCCCHHHHHHHHHHH-----CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCHHH
Confidence 469999999998876 6799999999999999999999999999997655543
No 43
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=95.23 E-value=0.022 Score=53.33 Aligned_cols=52 Identities=23% Similarity=0.255 Sum_probs=45.9
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhh
Q 010092 455 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVD 511 (518)
Q Consensus 455 ~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~~ 511 (518)
..|+++|.+||.+.. .++|.++||+.+++|..||+.+..+.++||.-..+.+
T Consensus 158 ~~Lt~rE~~vL~~l~-----~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~~~~~~~ 209 (225)
T 3klo_A 158 AKLTKREQQIIKLLG-----SGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQ 209 (225)
T ss_dssp HTSCHHHHHHHHHHT-----TTCCHHHHHHHTTCCHHHHHHHHHHHTTTSCCSSHHH
T ss_pred ccCCHHHHHHHHHHH-----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCHHH
Confidence 469999999998854 6899999999999999999999999999997665543
No 44
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=95.18 E-value=0.068 Score=50.63 Aligned_cols=64 Identities=23% Similarity=0.244 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhhh
Q 010092 445 LLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYL 513 (518)
Q Consensus 445 ~l~~~L~~~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~~~L 513 (518)
.........+..|+++++.|+.+.. .+++..+||..||+|..+|+....++++||.-..+.+-+
T Consensus 187 ~~~~~~~~~l~~L~~r~~~i~~~~~-----~g~~~~eia~~l~~s~~tv~~~l~~i~~kl~~~~~~elv 250 (258)
T 3p7n_A 187 ARRERAAEMLKTLSPRQLEVTTLVA-----SGLRNKEVAARLGLSEKTVKMHRGLVMEKLNLKTSADLV 250 (258)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHHH
Confidence 3445677888999999999999876 578999999999999999999999999999877665443
No 45
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=94.77 E-value=0.008 Score=66.37 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=13.0
Q ss_pred hhcCCcChHHHHHHhcCCCCCCChHHHHHHHHHHhHhH
Q 010092 195 EYSYSTDLVSLDWKKMKIPPVLSSTEHTWLFKLMQPMK 232 (518)
Q Consensus 195 ~~~~~~d~~~~yl~~i~~~plLt~eEE~~L~~~iq~~~ 232 (518)
+.+..+|+|+|||++||.+||||+++|+.|++.|+.+.
T Consensus 90 ~~~~~~dpvrmyl~emg~~~ll~~~~e~~~ak~ie~g~ 127 (613)
T 3iyd_F 90 EIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 (613)
T ss_dssp ---------------C--------CSSSTTTHHHHHHH
T ss_pred cccCCCCcHHHHHHHhcccccCCchhHHHHHHHHHHhH
Confidence 34578999999999999999999999999999997553
No 46
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=92.81 E-value=0.079 Score=37.58 Aligned_cols=25 Identities=8% Similarity=-0.065 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.+.|..+||+.||||+.+|++++.+
T Consensus 20 ~g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 20 KGHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp TTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4689999999999999999987643
No 47
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=92.79 E-value=0.091 Score=48.66 Aligned_cols=51 Identities=12% Similarity=-0.019 Sum_probs=43.0
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhC---CCHHHHHHHHHHHHHHHhCc
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLN---ISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~Lg---ISrerVRqie~rALkKLR~~ 507 (518)
.|+++|.+||.+..- +.+..+|.+|||+.++ +|..+|+.+..+.++||...
T Consensus 145 ~Lt~rE~~vl~~l~~-~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~~~ 198 (220)
T 1p2f_A 145 HLPKKEFEILLFLAE-NAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIEDD 198 (220)
T ss_dssp CCCHHHHHHHHHHHH-TTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHCSS
T ss_pred ecCHHHHHHHHHHHH-CCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHhcc
Confidence 599999999986551 1123499999999999 99999999999999999753
No 48
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=92.31 E-value=0.13 Score=48.38 Aligned_cols=51 Identities=16% Similarity=0.066 Sum_probs=42.1
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHhCc
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNL-----NISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~L-----gISrerVRqie~rALkKLR~~ 507 (518)
.|+++|.+||.+..- +.+..+|.+|||+.+ ++|..+|+.+..+.++||...
T Consensus 153 ~LT~rE~~vL~~l~~-~~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~~~ 208 (238)
T 2gwr_A 153 SLTPLEFDLLVALAR-KPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVEKD 208 (238)
T ss_dssp CCCHHHHHHHHHHHH-STTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHCSS
T ss_pred ccCHHHHHHHHHHHH-CCCceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhccC
Confidence 599999999987651 112349999999999 999999999999999999753
No 49
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=91.95 E-value=0.12 Score=48.07 Aligned_cols=51 Identities=14% Similarity=0.063 Sum_probs=43.2
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHhCc
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNL-----NISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~L-----gISrerVRqie~rALkKLR~~ 507 (518)
.|+++|.+||.+-.- +.+..+|.+|||+.+ ++|..+|+.+..+.++||...
T Consensus 156 ~Lt~rE~~vL~~l~~-~~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~Kl~~~ 211 (230)
T 2oqr_A 156 TLPLKEFDLLEYLMR-NSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEAD 211 (230)
T ss_dssp CCCHHHHHHHHHHHH-TTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHHCSS
T ss_pred ecCHHHHHHHHHHHh-CCCceEcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHhhC
Confidence 599999999987551 123459999999999 999999999999999999753
No 50
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=91.87 E-value=0.14 Score=41.13 Aligned_cols=42 Identities=12% Similarity=0.145 Sum_probs=29.6
Q ss_pred HHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 459 PKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 459 ~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
+.++.||.+-.-...+...|..|||+.||||+.+|++++.+-
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L 55 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSL 55 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345666655443322347899999999999999998775543
No 51
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=91.58 E-value=0.11 Score=47.99 Aligned_cols=52 Identities=17% Similarity=0.109 Sum_probs=43.1
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHHhCcc
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLN-----ISREMVRKHEVKGLMKLKHPT 508 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~Lg-----ISrerVRqie~rALkKLR~~~ 508 (518)
.|+++|.+||.+..- +.+..+|.+|||+.++ +|..+|+.+..+.++||....
T Consensus 151 ~Lt~rE~~vL~~l~~-~~~~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l~~Kl~~~~ 207 (225)
T 1kgs_A 151 DLTKKEYQILEYLVM-NKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDKGF 207 (225)
T ss_dssp CCCHHHHHHHHHHHH-TTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHHTTC
T ss_pred ecCHHHHHHHHHHHh-CCCcccCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhhCCC
Confidence 599999999987541 1123499999999998 999999999999999997543
No 52
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=91.21 E-value=0.29 Score=39.74 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=27.7
Q ss_pred HHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 460 KESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 460 rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++.||.+-.-...+...|..|||+.||||+.+|++.+.+
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~ 50 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYS 50 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 3555665544322345799999999999999888855443
No 53
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=91.06 E-value=0.18 Score=44.09 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=28.8
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010092 455 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 455 ~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqi 496 (518)
..|+.| .+|+.+-. +++|+.|||+.+|+|..||.+.
T Consensus 60 ~aLs~R-~eV~klL~-----~G~syreIA~~~g~S~aTIsRv 95 (119)
T 3kor_A 60 QSLSQR-LQVAKMIK-----QGYTYATIEQESGASTATISRV 95 (119)
T ss_dssp HHHHHH-HHHHHHHH-----HTCCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHH-HHHHHHHH-----cCCCHHHHHHHHCCCHHHHHHH
Confidence 345566 67777755 5799999999999999999863
No 54
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=90.97 E-value=0.11 Score=48.37 Aligned_cols=51 Identities=10% Similarity=-0.089 Sum_probs=42.0
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHHhCc
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLN-----ISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~Lg-----ISrerVRqie~rALkKLR~~ 507 (518)
.|+++|.+||.+..- +.+..+|.++||+.++ +|..+|+.+..+.++||...
T Consensus 159 ~Lt~rE~~vL~~l~~-g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl~~~ 214 (233)
T 1ys7_A 159 DLTKREFDLLAVLAE-HKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAG 214 (233)
T ss_dssp CCCHHHHHHHHHHHH-TTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHh-CCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHhccC
Confidence 599999999987651 1123399999999998 99999999999999999864
No 55
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=90.81 E-value=0.24 Score=42.69 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=33.1
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.|++.++..|...+ ..++|..+||+.||+|+.+|+.+..+.
T Consensus 6 ~~s~~~r~~i~~~~----~~G~s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 6 ALSDTERAQLDVMK----LLNVSLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCHHHHHHHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHSG
T ss_pred cCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHcc
Confidence 46777776666655 367999999999999999999988653
No 56
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=90.48 E-value=0.36 Score=40.51 Aligned_cols=42 Identities=19% Similarity=0.029 Sum_probs=32.1
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
.+++.++.-|...| ..++|..+||+.||||+.+|+++..+..
T Consensus 17 ~~s~~~r~~i~~~~----~~g~s~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 17 PLPNNIRLKIVEMA----ADGIRPCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp CCCHHHHHHHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45555555544444 2578999999999999999999998754
No 57
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=89.19 E-value=0.2 Score=47.92 Aligned_cols=54 Identities=20% Similarity=0.121 Sum_probs=44.5
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHH-----HhCCCHHHHHHHHHHHHHHHhCcchh
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAG-----NLNISREMVRKHEVKGLMKLKHPTRV 510 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~-----~LgISrerVRqie~rALkKLR~~~~~ 510 (518)
.|+++|.+||.+..- +.+..+|.+|||+ .+++|..+|+.+..+.++||....+.
T Consensus 182 ~LT~rE~evL~ll~~-g~~~~~s~~eIa~~l~~~~l~~s~~TV~~hi~~lr~KL~~~~~~ 240 (249)
T 3q9s_A 182 RLSPKEFDILALLIR-QPGRVYSRQEIGQEIWQGRLPEGSNVVDVHMANLRAKLRDLDGY 240 (249)
T ss_dssp CCCHHHHHHHHHHHH-STTCCCCHHHHHHHHHTTCSCTTCSHHHHHHHHHHHHHCCCSCC
T ss_pred ecCHHHHHHHHHHHH-CCCceEcHHHHHHHhcCCCCCCCccCHHHHHHHHHHHhhcCCCC
Confidence 599999999998762 1234599999999 58899999999999999999865443
No 58
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=89.13 E-value=0.073 Score=51.97 Aligned_cols=50 Identities=14% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhC--CCHHHHHHHHHHHHHHH
Q 010092 450 LDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLN--ISREMVRKHEVKGLMKL 504 (518)
Q Consensus 450 L~~~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~Lg--ISrerVRqie~rALkKL 504 (518)
+...+..|++.++. |...|| .+.|.+|||+.|| ||.++|+.++.+|++.|
T Consensus 192 l~e~i~~l~~~~~~-L~~~~~----~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~l 243 (245)
T 3ugo_A 192 MVETINKLSRTARQ-LQQELG----REPSYEEIAEAMGPGWDAKRVEETLKIAQEPV 243 (245)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH-HHHHhC----CCCCHHHHHHHHCCCCCHHHHHHHHHHHhhcc
Confidence 45556677777777 444563 6789999999999 99999999999998776
No 59
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=88.97 E-value=0.43 Score=45.06 Aligned_cols=28 Identities=14% Similarity=0.121 Sum_probs=25.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 474 KGDRTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 474 ~e~~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
..++|..|||+.||||+.+|++++..|.
T Consensus 22 ~~g~tQ~eIA~~lGiSr~~VSR~L~~A~ 49 (192)
T 1zx4_A 22 NDGMSQKDIAAKEGLSQAKVTRALQAAS 49 (192)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHHHhc
Confidence 3679999999999999999999998874
No 60
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=88.88 E-value=0.11 Score=48.09 Aligned_cols=51 Identities=10% Similarity=0.049 Sum_probs=42.5
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHHhCc
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLN-----ISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~Lg-----ISrerVRqie~rALkKLR~~ 507 (518)
.|+++|.+||.+-.- +.+..+|.+|||+.++ +|..+|+.+..+.++||...
T Consensus 143 ~Lt~rE~~vL~~l~~-~~~~~~s~~~Ia~~l~~~~~~~s~~tv~~~i~~lr~KL~~~ 198 (223)
T 2hqr_A 143 EVKGKPFEVLTHLAR-HRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDKP 198 (223)
T ss_dssp CCCSTTTHHHHHHHH-TCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHHHTT
T ss_pred ecCHHHHHHHHHHHh-CCCCcCCHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHhcC
Confidence 599999999987651 0112399999999999 99999999999999999753
No 61
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=88.62 E-value=0.57 Score=41.21 Aligned_cols=43 Identities=16% Similarity=-0.006 Sum_probs=33.0
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLM 502 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALk 502 (518)
.++..++.-|...+ ..++|..+||+.||||+.+|+++..+...
T Consensus 32 ~~s~e~r~~iv~~~----~~G~s~~~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 32 PLPDVVRQRIVELA----HQGVRPCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp CCCHHHHHHHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45666665555555 25789999999999999999999987543
No 62
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=88.27 E-value=0.8 Score=39.46 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=34.7
Q ss_pred HHhcCCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHH
Q 010092 453 VLDSLKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 453 ~L~~L~~rEr~VL~lryGL~~~e~-~Tl~EIA~~LgISrerVRqie~r 499 (518)
..-.|++.+..|+..-.. ...+ +|..|||+.+|+|+++|.+.+.+
T Consensus 20 ~~~gLt~~e~~il~~L~~--~~~~~~t~~eLa~~l~~s~sTV~r~L~~ 65 (123)
T 3r0a_A 20 CALNLTKADLNVMKSFLN--EPDRWIDTDALSKSLKLDVSTVQRSVKK 65 (123)
T ss_dssp HHHTCCHHHHHHHHHHHH--STTCCEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHH--CCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 345799999999876553 1234 89999999999999999865544
No 63
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=88.18 E-value=1.1 Score=36.37 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=33.6
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.|++.+..||..-.- ..+.|..|||+.+|+|+.+|++++.+-
T Consensus 17 ~l~~~~~~il~~l~~---~~~~s~~ela~~l~is~~tv~~~l~~L 58 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLE---RGGMRVSEIARELDLSARFVRDRLKVL 58 (109)
T ss_dssp CCCHHHHHHHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 478999888876542 257999999999999999999766543
No 64
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=87.44 E-value=1.1 Score=39.64 Aligned_cols=43 Identities=19% Similarity=0.157 Sum_probs=33.6
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 455 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 455 ~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
..|++.++.||.+-.. ....|+.|||+.+|+|+.+|++..++-
T Consensus 5 ~~ld~~d~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~L 47 (151)
T 2dbb_A 5 RKLDRVDMQLVKILSE---NSRLTYRELADILNTTRQRIARRIDKL 47 (151)
T ss_dssp -CCCHHHHHHHHHHHH---CTTCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3588999998875432 357999999999999999998766543
No 65
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=87.43 E-value=0.81 Score=36.97 Aligned_cols=27 Identities=7% Similarity=0.126 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
.+.|..+||+.||||+.+|+++..+..
T Consensus 37 ~g~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 37 DGESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 358999999999999999999986543
No 66
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=87.38 E-value=0.49 Score=38.67 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=22.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
+.|..|||+.||||+++|++++.+-
T Consensus 30 g~sa~eLAk~LgiSk~aVr~~L~~L 54 (82)
T 1oyi_A 30 GATAAQLTRQLNMEKREVNKALYDL 54 (82)
T ss_dssp TEEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3999999999999999999887653
No 67
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=87.35 E-value=0.87 Score=40.04 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=33.0
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.|++.++.||.+-.. ....|+.|||+.+|+|+++|++.+++-
T Consensus 2 ~ld~~d~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~L 43 (144)
T 2cfx_A 2 KLDQIDLNIIEELKK---DSRLSMRELGRKIKLSPPSVTERVRQL 43 (144)
T ss_dssp CCCHHHHHHHHHHHH---CSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 378888888876432 356999999999999999998766543
No 68
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=87.26 E-value=1.1 Score=36.26 Aligned_cols=44 Identities=16% Similarity=0.099 Sum_probs=33.8
Q ss_pred HhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 454 LDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 454 L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
...|++.+..+|...+. ...+.|..|||+.+|+|+.+|++++..
T Consensus 16 ~~~l~~~~~~~l~~l~~--~~~~~t~~ela~~l~is~~tv~~~l~~ 59 (109)
T 2d1h_A 16 CYKITDTDVAVLLKMVE--IEKPITSEELADIFKLSKTTVENSLKK 59 (109)
T ss_dssp HHTCCHHHHHHHHHHHH--HCSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHH--cCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 35789988888765441 125799999999999999999866544
No 69
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=87.09 E-value=0.63 Score=35.98 Aligned_cols=40 Identities=5% Similarity=0.043 Sum_probs=26.9
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 010092 457 LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEV 498 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~ 498 (518)
+++....||.+.-- +..++|..|||+.+|+|+++|.+++.
T Consensus 8 m~~~~~~IL~~L~~--~~~~~s~~eLA~~lglsr~tv~~~l~ 47 (67)
T 2heo_A 8 GDNLEQKILQVLSD--DGGPVAIFQLVKKCQVPKKTLNQVLY 47 (67)
T ss_dssp -CHHHHHHHHHHHH--HCSCEEHHHHHHHHCSCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH--cCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 34445556554321 12579999999999999988886544
No 70
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=87.02 E-value=0.86 Score=43.11 Aligned_cols=50 Identities=16% Similarity=0.086 Sum_probs=43.3
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHhC
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNL-----NISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~L-----gISrerVRqie~rALkKLR~ 506 (518)
.|+++|.+||.+.. .+.+...|.++|++.+ ++|..+|+.+..+..+||..
T Consensus 176 ~LT~rE~~iL~~l~-~~~~~~~s~~~i~~~lw~~~~~~~~~tv~~~i~~lr~KL~~ 230 (250)
T 3r0j_A 176 SLSPTEFTLLRYFV-INAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 230 (250)
T ss_dssp CCCHHHHHHHHHHH-HTTTCCBCHHHHHHHHTTTSCCSCTHHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHH-HCCCceEcHHHHHHHHcCCCCCCCccCHHHHHHHHHHhhcC
Confidence 59999999998765 2224679999999999 78999999999999999975
No 71
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=87.00 E-value=0.71 Score=46.22 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=31.1
Q ss_pred HHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 010092 463 LVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLM 502 (518)
Q Consensus 463 ~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALk 502 (518)
.|..++| .+++|..|||+.||||+.+||+.+..+.+
T Consensus 12 ~ia~l~~----~~~~~~~ela~~l~vS~~tIrRdL~~l~~ 47 (315)
T 2w48_A 12 KIAQLYY----EQDMTQAQIARELGIYRTTISRLLKRGRE 47 (315)
T ss_dssp HHHHHHH----TSCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHH----cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4666777 57899999999999999999999988755
No 72
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=86.51 E-value=0.61 Score=43.37 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=33.0
Q ss_pred cCCHHHHHHHhHHhcC--CCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGL--DGKGDRTLGEIAGNLNISREMVRKHEV 498 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL--~~~e~~Tl~EIA~~LgISrerVRqie~ 498 (518)
.|+++|++||.+-.-+ ..+.+.|..|||+.||+|..+|++++.
T Consensus 2 ~lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~ 46 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLI 46 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHH
Confidence 5899999999774321 123578999999999999998876653
No 73
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=86.23 E-value=1.1 Score=39.61 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=33.5
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.|++.++.||.+-.. ....|+.|||+.+|+|+++|++++.+-
T Consensus 4 ~ld~~~~~iL~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~L 45 (150)
T 2w25_A 4 ALDDIDRILVRELAA---DGRATLSELATRAGLSVSAVQSRVRRL 45 (150)
T ss_dssp CCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 488889888876431 347999999999999999998776553
No 74
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=86.12 E-value=1.1 Score=39.68 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=33.2
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.|++.++.||.+-.. ....|+.|||+.+|+|+.+|++.+.+-
T Consensus 4 ~ld~~~~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~L 45 (151)
T 2cyy_A 4 PLDEIDKKIIKILQN---DGKAPLREISKITGLAESTIHERIRKL 45 (151)
T ss_dssp CCCHHHHHHHHHHHH---CTTCCHHHHHHHHCSCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 478888888875431 247999999999999999999776554
No 75
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=86.05 E-value=1.9 Score=36.48 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=39.5
Q ss_pred HHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 446 LRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 446 l~~~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
+...+...+. .|++.+..||..-+. .++.|..|||+.+|+|+.+|.++..+-
T Consensus 14 ~~~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~~~~ela~~l~~s~~tvs~~l~~L 67 (138)
T 3bpv_A 14 HRVFIGRELGHLNLTDAQVACLLRIHR---EPGIKQDELATFFHVDKGTIARTLRRL 67 (138)
T ss_dssp HHHHHHHHSGGGTCCHHHHHHHHHHHH---STTCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344555554 489999999887653 367999999999999999999766553
No 76
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=85.90 E-value=2 Score=35.70 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=33.7
Q ss_pred HHHHHHhcCC-HHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 449 ALDDVLDSLK-PKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 449 ~L~~~L~~L~-~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.+..++..|. +....||.+-. ..++|..|||+.+|+|+++|+++++.
T Consensus 15 ~~~~~~~~l~~~~r~~IL~~L~----~~~~~~~ela~~l~is~stvs~~L~~ 62 (106)
T 1r1u_A 15 RVTEIFKALGDYNRIRIMELLS----VSEASVGHISHQLNLSQSNVSHQLKL 62 (106)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHH----HCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH----hCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4455555554 55566666543 25789999999999999999977654
No 77
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=85.78 E-value=1.1 Score=40.08 Aligned_cols=42 Identities=12% Similarity=0.080 Sum_probs=33.4
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.|++.++.||.+-.. ....|+.|||+.+|+|+.+|++++.+-
T Consensus 7 ~ld~~~~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~L 48 (162)
T 2p5v_A 7 TLDKTDIKILQVLQE---NGRLTNVELSERVALSPSPCLRRLKQL 48 (162)
T ss_dssp CCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 478888888876442 346899999999999999999776553
No 78
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=85.72 E-value=1.6 Score=37.47 Aligned_cols=52 Identities=13% Similarity=0.237 Sum_probs=38.0
Q ss_pred HHHHHHHHHhc----CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 446 LRLALDDVLDS----LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 446 l~~~L~~~L~~----L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
+...+...+.. |++.|..||..-+. .++.|..|||+.+|+|+++|.++..+-
T Consensus 20 ~~~~~~~~l~~~~~~lt~~~~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~L 75 (142)
T 3ech_A 20 VRTRIQSELDCQRLDLTPPDVHVLKLIDE---QRGLNLQDLGRQMCRDKALITRKIREL 75 (142)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHH---TTTCCHHHHHHHHC---CHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHh---CCCcCHHHHHHHhCCCHHHHHHHHHHH
Confidence 44556666654 99999999987663 357999999999999999999776654
No 79
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=85.64 E-value=1.8 Score=36.84 Aligned_cols=50 Identities=18% Similarity=0.142 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCCHHHHHHHhHHhcCCC---CCCCCHHHHHHHhCCCHHHHHHHHH
Q 010092 447 RLALDDVLDSLKPKESLVIRQRFGLDG---KGDRTLGEIAGNLNISREMVRKHEV 498 (518)
Q Consensus 447 ~~~L~~~L~~L~~rEr~VL~lryGL~~---~e~~Tl~EIA~~LgISrerVRqie~ 498 (518)
...|...+..|++.|+.|..+.. .. ...+|..|||+..|+|..+|.+.-+
T Consensus 9 ~~~i~~~~~~ls~~e~~ia~yil--~~~~~~~~~si~elA~~~~vS~aTv~Rf~k 61 (111)
T 2o3f_A 9 LAIIQSMXHXLPPSERKLADYIL--AHPHXAIESTVNEISALANSSDAAVIRLCX 61 (111)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHH--HCHHHHHTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhccCCHHHHHHHHHHH--HChHHHHhcCHHHHHHHHCCCHHHHHHHHH
Confidence 34577778899999999986554 21 1369999999999999999987654
No 80
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=85.62 E-value=0.95 Score=39.26 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=31.3
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 457 LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
|++.++.||..-.. ....|+.|||+.+|+|+.+|++.+.+-
T Consensus 2 ld~~~~~il~~L~~---~~~~~~~ela~~lg~s~~tv~~~l~~L 42 (141)
T 1i1g_A 2 IDERDKIILEILEK---DARTPFTEIAKKLGISETAVRKRVKAL 42 (141)
T ss_dssp CCSHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 66777888765431 246899999999999999998765543
No 81
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=85.38 E-value=1.2 Score=39.36 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=33.3
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.|++.++.||.+-.- ....|+.|||+.+|+|+++|++.+++-
T Consensus 5 ~ld~~d~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~L 46 (152)
T 2cg4_A 5 LIDNLDRGILEALMG---NARTAYAELAKQFGVSPETIHVRVEKM 46 (152)
T ss_dssp CCCHHHHHHHHHHHH---CTTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 478888888875431 357999999999999999999776554
No 82
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=85.25 E-value=1.3 Score=38.89 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=31.3
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 457 LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
|++.+..||.+-- .....|+.|||+.+|+|+++|++.+.+-
T Consensus 1 ld~~~~~il~~L~---~~~~~~~~ela~~lg~s~~tv~~~l~~L 41 (150)
T 2pn6_A 1 MDEIDLRILKILQ---YNAKYSLDEIAREIRIPKATLSYRIKKL 41 (150)
T ss_dssp CCHHHHHHHHHHT---TCTTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHH---HcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5677778876543 1346999999999999999998766543
No 83
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=85.20 E-value=1.3 Score=35.63 Aligned_cols=45 Identities=20% Similarity=0.347 Sum_probs=32.1
Q ss_pred HHHhcC-CHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 452 DVLDSL-KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 452 ~~L~~L-~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++..| ++.+..||..-. .+.+.|..|||+.+|+|+.+|++++.+
T Consensus 16 ~~~~~l~~~~~~~il~~l~---~~~~~s~~ela~~l~is~~tvs~~l~~ 61 (99)
T 3cuo_A 16 ALLKAMSHPKRLLILCMLS---GSPGTSAGELTRITGLSASATSQHLAR 61 (99)
T ss_dssp HHHHHHCSHHHHHHHHHHT---TCCSEEHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHhCChHHHHHHHHHH---hCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 333333 466667775543 235799999999999999999976654
No 84
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=84.81 E-value=2.2 Score=36.45 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=37.1
Q ss_pred HHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 448 LALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 448 ~~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
..+...+. .|++.+..|+.+-+ +. .++.|..|||+.+|+|+++|.++..+
T Consensus 13 ~~~~~~~~~~gl~~~~~~il~~L~-~~-~~~~t~~ela~~l~~~~stvs~~l~~ 64 (152)
T 1ku9_A 13 ELFSELAKIHGLNKSVGAVYAILY-LS-DKPLTISDIMEELKISKGNVSMSLKK 64 (152)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH-HC-SSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChhHHHHHHHHH-Hc-CCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 33444443 48999999987664 22 25799999999999999999876654
No 85
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=84.41 E-value=1.5 Score=35.70 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=29.3
Q ss_pred CCHHHHHH-HhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 457 LKPKESLV-IRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 457 L~~rEr~V-L~lryGL~~~e-~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.++..+.- +.++. .. +.|+.+||..+|||+.+|+++..+.
T Consensus 6 ys~e~k~~~v~~~~----~~~g~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 6 YSEEFKRDAVALYE----NSDGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCHHHHHHHHHHHT----TGGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH----HcCCChHHHHHHHHCcCHHHHHHHHHHH
Confidence 45555543 43443 23 6899999999999999999998654
No 86
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=84.36 E-value=1.6 Score=37.38 Aligned_cols=41 Identities=22% Similarity=0.160 Sum_probs=32.8
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.|++.+..||..-+. .+ .|..|||+.+|+|+++|+++..+-
T Consensus 35 ~lt~~~~~iL~~l~~---~~-~t~~eLa~~l~~s~~tvs~~l~~L 75 (146)
T 3tgn_A 35 ALTNTQEHILMLLSE---ES-LTNSELARRLNVSQAAVTKAIKSL 75 (146)
T ss_dssp CCCHHHHHHHHHHTT---CC-CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh---CC-CCHHHHHHHHCCCHHHHHHHHHHH
Confidence 478888888876652 33 999999999999999999766553
No 87
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=84.33 E-value=1.4 Score=38.01 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=33.6
Q ss_pred HhcCCHHHHHHHhHHhcC-CCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 454 LDSLKPKESLVIRQRFGL-DGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 454 L~~L~~rEr~VL~lryGL-~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
+-.|++.+..+|...+-+ ....+.|..+||+.+|+|+.+|++++++-
T Consensus 8 ~~~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~L 55 (139)
T 2x4h_A 8 MSNLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHL 55 (139)
T ss_dssp ---CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHH
Confidence 346888888887765432 22357899999999999999999766543
No 88
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=84.23 E-value=1.5 Score=39.38 Aligned_cols=40 Identities=10% Similarity=0.154 Sum_probs=31.3
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 457 LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
|++.++.||.+--- ....|+.|||+.+|+|+.+|++.+.+
T Consensus 1 lD~~d~~il~~L~~---~~~~s~~~la~~lg~s~~tv~~rl~~ 40 (162)
T 3i4p_A 1 MDRLDRKILRILQE---DSTLAVADLAKKVGLSTTPCWRRIQK 40 (162)
T ss_dssp CCHHHHHHHHHHTT---CSCSCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---CCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 56677888765431 34689999999999999999977655
No 89
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=84.20 E-value=3.4 Score=35.05 Aligned_cols=54 Identities=7% Similarity=0.009 Sum_probs=39.6
Q ss_pred HHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 446 LRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 446 l~~~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
+...+...+. .|++.|..||..-+.- ++.+.|..+||+.+|+|+.+|.++..+-
T Consensus 19 ~~~~~~~~~~~~~lt~~~~~iL~~l~~~-~~~~~~~~ela~~l~~~~~tvs~~l~~L 74 (141)
T 3bro_A 19 MSTRFDIFAKKYDLTGTQMTIIDYLSRN-KNKEVLQRDLESEFSIKSSTATVLLQRM 74 (141)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHT-TTSCCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHC-CCCCcCHHHHHHHHCCCcchHHHHHHHH
Confidence 3444555554 4899999998876642 1237999999999999999998766554
No 90
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=83.97 E-value=3.1 Score=36.07 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=39.3
Q ss_pred HHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 446 LRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 446 l~~~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
+...+...+. .|++.+..||..-+. .++.|..+||+.+|+++.+|.+++.+-
T Consensus 28 ~~~~~~~~l~~~~lt~~~~~iL~~l~~---~~~~t~~ela~~l~i~~~tvs~~l~~L 81 (155)
T 3cdh_A 28 ASAQFHDHIRAQGLRVPEWRVLACLVD---NDAMMITRLAKLSLMEQSRMTRIVDQM 81 (155)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHSS---CSCBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH---CCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344555553 499999999877652 357999999999999999999776554
No 91
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=83.92 E-value=3.3 Score=35.31 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=37.4
Q ss_pred HHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 449 ALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 449 ~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.+...+. .|++.+..||..-+ .++.|..|||+.+|+|+++|++++.+-
T Consensus 25 ~~~~~~~~~~l~~~~~~iL~~l~----~~~~~~~ela~~l~~s~~tvs~~l~~L 74 (146)
T 2gxg_A 25 ELNRRLGELNLSYLDFLVLRATS----DGPKTMAYLANRYFVTQSAITASVDKL 74 (146)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHT----TSCBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh----cCCcCHHHHHHHhCCCchhHHHHHHHH
Confidence 3444443 48999999987765 357999999999999999998766554
No 92
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=83.81 E-value=2 Score=36.42 Aligned_cols=50 Identities=6% Similarity=0.041 Sum_probs=38.0
Q ss_pred HHHHHHHh-cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 448 LALDDVLD-SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 448 ~~L~~~L~-~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
..+...+. .|++.+..||..-+. .++.|..+||+.+|+|+.+|.+++.+-
T Consensus 26 ~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~tvs~~l~~L 76 (140)
T 2nnn_A 26 ALFANGIGNGLTPTQWAALVRLGE---TGPCPQNQLGRLTAMDAATIKGVVERL 76 (140)
T ss_dssp HHHHHHCSSCCCHHHHHHHHHHHH---HSSBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444443 699999999877652 247999999999999999998766553
No 93
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=83.80 E-value=2.8 Score=35.49 Aligned_cols=54 Identities=11% Similarity=-0.014 Sum_probs=41.1
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 445 LLRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 445 ~l~~~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
.+...+...+. .|++.|..||..-+. .++.|..+||+.+|+|+++|.++..+-.
T Consensus 18 ~~~~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~~~~~la~~l~~~~~tvs~~l~~L~ 73 (138)
T 1jgs_A 18 KKDRLLNEYLSPLDITAAQFKVLCSIRC---AACITPVELKKVLSVDLGALTRMLDRLV 73 (138)
T ss_dssp HHHHHHHHHHTTTTSCHHHHHHHHHHHH---HSSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHh---cCCCCHHHHHHHHCCChHHHHHHHHHHH
Confidence 34455666664 389999999887653 3578999999999999999997766543
No 94
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=83.76 E-value=2.9 Score=36.23 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=39.5
Q ss_pred HHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 447 RLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 447 ~~~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
...+...+. .|++.|..||..-+. .++.|..+||+.+|+++.+|.++..+-.
T Consensus 27 ~~~~~~~~~~~~lt~~q~~iL~~l~~---~~~~~~~eLa~~l~~~~~~vs~~l~~L~ 80 (149)
T 4hbl_A 27 AQFYEKKLKQFGITYSQYLVMLTLWE---ENPQTLNSIGRHLDLSSNTLTPMLKRLE 80 (149)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH---SSSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444443 489999999887653 3679999999999999999997766543
No 95
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=83.71 E-value=2.6 Score=38.46 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 445 LLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 445 ~l~~~L~~~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.+...+...+..|++.|..||..-+-.. .++.|..+||+.+|+|+++|.+++.+-
T Consensus 27 ~~~~~~~~~~~~lt~~q~~vL~~L~~~~-~~~~t~~eLa~~l~is~~tvs~~l~~L 81 (189)
T 3nqo_A 27 KIQIEGDKYFGILTSRQYMTILSILHLP-EEETTLNNIARKMGTSKQNINRLVANL 81 (189)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHSC-GGGCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhcc-CCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445566666779999999998766211 247999999999999999999766553
No 96
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=83.64 E-value=2.7 Score=34.36 Aligned_cols=47 Identities=15% Similarity=0.367 Sum_probs=32.1
Q ss_pred HHHHHHhcC-CHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 449 ALDDVLDSL-KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 449 ~L~~~L~~L-~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.+..++..| +|....||.+-. ..++|..|||+.+|+|+.+|++++..
T Consensus 12 ~~~~~~~~l~~~~r~~Il~~L~----~~~~~~~ela~~l~is~~tvs~~L~~ 59 (102)
T 3pqk_A 12 EVANLLKTLSHPVRLMLVCTLV----EGEFSVGELEQQIGIGQPTLSQQLGV 59 (102)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHH----TCCBCHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH----hCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 344455555 445555555443 24699999999999999999876543
No 97
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=83.58 E-value=1.6 Score=35.40 Aligned_cols=47 Identities=13% Similarity=0.246 Sum_probs=31.9
Q ss_pred HHHHHHhcC-CHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 449 ALDDVLDSL-KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 449 ~L~~~L~~L-~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.+..++..| ++....||.+-. . .++|..|||+.+|+|+++|++++..
T Consensus 12 ~~~~~~~~l~~~~r~~Il~~L~---~-~~~~~~ela~~l~is~~tvs~~L~~ 59 (98)
T 3jth_A 12 KAVVLLKAMANERRLQILCMLH---N-QELSVGELCAKLQLSQSALSQHLAW 59 (98)
T ss_dssp HHHHHHHHHCSHHHHHHHHHTT---T-SCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHh---c-CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 344445555 455555554432 2 5799999999999999999866543
No 98
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=83.52 E-value=4.2 Score=32.92 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=28.5
Q ss_pred CHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 458 KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 458 ~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
++....||.+-. .++|..|||+.+|+|+.+|++++..
T Consensus 30 ~~~r~~Il~~L~-----~~~~~~eLa~~l~is~~tv~~~L~~ 66 (96)
T 1y0u_A 30 NPVRRKILRMLD-----KGRSEEEIMQTLSLSKKQLDYHLKV 66 (96)
T ss_dssp CHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 556666665541 4699999999999999999976553
No 99
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=83.50 E-value=2.7 Score=35.58 Aligned_cols=42 Identities=12% Similarity=0.094 Sum_probs=34.8
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.|++.+..||..-+. .++.|..+||+.+|+|+.+|+++..+-
T Consensus 28 ~l~~~~~~iL~~l~~---~~~~~~~ela~~l~is~~~vs~~l~~L 69 (142)
T 3bdd_A 28 GISLTRYSILQTLLK---DAPLHQLALQERLQIDRAAVTRHLKLL 69 (142)
T ss_dssp SSCHHHHHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 699999999887652 357999999999999999999766554
No 100
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=83.25 E-value=6.3 Score=33.47 Aligned_cols=78 Identities=15% Similarity=0.124 Sum_probs=48.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhcCCccccCCCcCCchhhhhcccccCCCCcchhhhHHHHHHHHHHHHHhcCCHHHH-H
Q 010092 385 PTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENENQRQPALLRLALDDVLDSLKPKES-L 463 (518)
Q Consensus 385 PT~eELA~~lgis~e~v~~~l~~~~~~~SLD~~~~~~~eel~~~l~d~~~~~~ee~~~~~~l~~~L~~~L~~L~~rEr-~ 463 (518)
-+..+||+.+|++...|...++.....-.. .. ... + ..|++.+. .
T Consensus 23 ~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~---------------~~-~gr-~-----------------~~l~~~~~~~ 68 (141)
T 1u78_A 23 VSLHEMSRKISRSRHCIRVYLKDPVSYGTS---------------KR-APR-R-----------------KALSVRDERN 68 (141)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHSGGGTTCC---------------CC-CCC-C-----------------CSSCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHcccccCCc---------------CC-CCC-C-----------------CcCCHHHHHH
Confidence 478999999999999999888653211000 00 000 0 01222222 2
Q ss_pred HHhHHhcCCCCCCCCHHHHHHHhC--CCHHHHHHHHHHH
Q 010092 464 VIRQRFGLDGKGDRTLGEIAGNLN--ISREMVRKHEVKG 500 (518)
Q Consensus 464 VL~lryGL~~~e~~Tl~EIA~~Lg--ISrerVRqie~rA 500 (518)
|+.+.- ....|..+|+..|| +|.++|++++.+.
T Consensus 69 i~~~~~----~~~~s~~~i~~~lg~~~s~~tV~r~l~~~ 103 (141)
T 1u78_A 69 VIRAAS----NSCKTARDIRNELQLSASKRTILNVIKRS 103 (141)
T ss_dssp HHHHHH----HCCCCHHHHHHHTTCCSCHHHHHHHHHHT
T ss_pred HHHHHh----CCCCCHHHHHHHHCCCccHHHHHHHHHHC
Confidence 222211 24589999999999 8999999998763
No 101
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=83.24 E-value=3 Score=35.85 Aligned_cols=52 Identities=13% Similarity=0.257 Sum_probs=39.7
Q ss_pred HHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 447 RLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 447 ~~~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
...+...+. .|++.|..||..-+. .++.|..+||+.+|+|+.+|.+++.+-.
T Consensus 28 ~~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~tvs~~l~~Le 81 (150)
T 2rdp_A 28 KQRGREILTNYPITPPQFVALQWLLE---EGDLTVGELSNKMYLACSTTTDLVDRME 81 (150)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCchhHHHHHHHHH
Confidence 344555554 489999999877653 3579999999999999999997766543
No 102
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=83.24 E-value=1.5 Score=37.47 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=28.5
Q ss_pred CCHHHHHHHhHHhcCCC--CCCCCHHHHHHHhCCCHHHHHHH
Q 010092 457 LKPKESLVIRQRFGLDG--KGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~--~e~~Tl~EIA~~LgISrerVRqi 496 (518)
|++.|+.-|..|+-+-. ..++|+.+|++.+|+|..+|.+.
T Consensus 37 ~T~~E~~alaqR~~Ia~lL~~G~SyreIa~~tG~StaTIsRv 78 (107)
T 3frw_A 37 CTINELLSLSQRFEVAKMLTDKRTYLDISEKTGASTATISRV 78 (107)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCccHHHHHHH
Confidence 56666665554442210 25799999999999999999864
No 103
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=83.22 E-value=1.7 Score=34.27 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.+.|..|||+.+|+|+.+|++.+..
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~ 37 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLL 37 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4699999999999999999876654
No 104
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=83.17 E-value=2.2 Score=36.57 Aligned_cols=53 Identities=8% Similarity=-0.005 Sum_probs=40.2
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 445 LLRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 445 ~l~~~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.+...+...+. .|++.|..||..-+. .++.|..|||+.+|+++++|.++..+-
T Consensus 20 ~~~~~~~~~~~~~glt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~L 74 (140)
T 3hsr_A 20 EIIKKYTNYLKEYDLTYTGYIVLMAIEN---DEKLNIKKLGERVFLDSGTLTPLLKKL 74 (140)
T ss_dssp HHHHHHHHHHGGGTCCHHHHHHHHHSCT---TCEEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 34445555554 499999988876552 467999999999999999999776654
No 105
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=83.10 E-value=3.4 Score=34.66 Aligned_cols=48 Identities=13% Similarity=0.221 Sum_probs=35.2
Q ss_pred HHHHHHhc-CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 449 ALDDVLDS-LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 449 ~L~~~L~~-L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.+..++.. .++.+..||.+-. ..+.|+.|||+.+|+|+.+|++++.+-
T Consensus 21 ~~~~~~~~l~~~~~~~il~~L~----~~~~s~~ela~~l~is~stvsr~l~~L 69 (119)
T 2lkp_A 21 QVASTLQALATPSRLMILTQLR----NGPLPVTDLAEAIGMEQSAVSHQLRVL 69 (119)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH----HCCCCHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH----HCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34444444 3577777777655 247999999999999999999877653
No 106
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=82.91 E-value=4.2 Score=35.47 Aligned_cols=52 Identities=13% Similarity=0.034 Sum_probs=39.7
Q ss_pred HHHHHHHH---hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 447 RLALDDVL---DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 447 ~~~L~~~L---~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
...+...+ ..|++.|..||..-+. .++.|..+||+.+|+|+.+|.+++.+-.
T Consensus 34 ~~~~~~~l~~~~~lt~~~~~iL~~l~~---~~~~t~~ela~~l~is~~tvs~~l~~Le 88 (162)
T 2fa5_A 34 SGNIAKVYGDRYGMAIPEWRVITILAL---YPGSSASEVSDRTAMDKVAVSRAVARLL 88 (162)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHH---STTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444444 2599999999887663 3579999999999999999997766543
No 107
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=82.87 E-value=1.7 Score=39.60 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=33.6
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.|++.++.||.+--- ....|+.|||+.+|+|..+|++.+.+-
T Consensus 24 ~ld~~d~~IL~~L~~---~~~~s~~eLA~~lglS~~tv~~rl~~L 65 (171)
T 2e1c_A 24 PLDEIDKKIIKILQN---DGKAPLREISKITGLAESTIHERIRKL 65 (171)
T ss_dssp CCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 588889888876432 247999999999999999999776543
No 108
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=82.75 E-value=3.2 Score=35.25 Aligned_cols=55 Identities=13% Similarity=0.114 Sum_probs=40.9
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 445 LLRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 445 ~l~~~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.+...+...+. .|++.|..||..-+.- +.++.|..|||+.+|+|+.+|.++..+-
T Consensus 15 ~~~~~~~~~~~~~~lt~~~~~vL~~l~~~-~~~~~t~~ela~~l~~~~~tvs~~l~~L 71 (139)
T 3eco_A 15 EMKQKADQKLEQFDITNEQGHTLGYLYAH-QQDGLTQNDIAKALQRTGPTVSNLLRNL 71 (139)
T ss_dssp HHHHHHHHHHGGGTCCHHHHHHHHHHHHS-TTTCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhc-CCCCcCHHHHHHHhCCCcccHHHHHHHH
Confidence 34445555554 3899999999876631 1248999999999999999999766554
No 109
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=82.73 E-value=2.9 Score=35.85 Aligned_cols=51 Identities=16% Similarity=0.090 Sum_probs=38.6
Q ss_pred HHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 447 RLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 447 ~~~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
...+...+. .|++.|..||..-+. .++.|..+||+.+|+++.+|.++..+-
T Consensus 17 ~~~~~~~~~~~~lt~~q~~iL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~L 69 (145)
T 3g3z_A 17 CNVFDKWIGQQDLNYNLFAVLYTLAT---EGSRTQKHIGEKWSLPKQTVSGVCKTL 69 (145)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 334445553 489999999887653 346999999999999999999766554
No 110
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=82.64 E-value=2.6 Score=35.97 Aligned_cols=53 Identities=19% Similarity=0.142 Sum_probs=39.1
Q ss_pred HHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 446 LRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 446 l~~~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
+...+...+. .|++.+..||..-+. ..++.|..+||+.+|+|+.+|.++..+-
T Consensus 22 ~~~~~~~~~~~~~l~~~~~~iL~~l~~--~~~~~t~~~la~~l~~s~~~vs~~l~~L 76 (146)
T 2fbh_A 22 WRAELDRRLSHLGLSQARWLVLLHLAR--HRDSPTQRELAQSVGVEGPTLARLLDGL 76 (146)
T ss_dssp HHHHHHHHTGGGCCTTTHHHHHHHHHH--CSSCCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHH--cCCCCCHHHHHHHhCCChhhHHHHHHHH
Confidence 3344555554 489999998877622 1457999999999999999999766554
No 111
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=82.49 E-value=1.5 Score=46.72 Aligned_cols=119 Identities=12% Similarity=0.042 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhcCCccccCCCcCCchhhhhcccccCCCCcchhhhHHHHHHHH
Q 010092 370 IQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENENQRQPALLRLA 449 (518)
Q Consensus 370 i~ka~~eL~~elgR~PT~eELA~~lgis~e~v~~~l~~~~~~~SLD~~~~~~~eel~~~l~d~~~~~~ee~~~~~~l~~~ 449 (518)
..+....|.. +..-|..+||+.+|+|...++.-+..-...+.-.......+..+ .+..++. .... .
T Consensus 20 ~~~IL~~L~~--~~~it~~eLA~~L~VS~RTIr~dI~~In~~L~~~~~I~~~~~Gy--~L~~~~~----~~~~------~ 85 (485)
T 3sqn_A 20 QIRLLEQLLN--VPQLTAKRLAAQIQTTERTVFSDLQYIRSQLPADWSIETDSSGI--RLRNQGN----AQTN------E 85 (485)
T ss_dssp HHHHHHHHHH--CCSCBCGGGHHHHTSCHHHHHHHHHHHHTTCCTTEEEEEETTEE--EEEEC-------CTH------H
T ss_pred HHHHHHHHHh--CCCcCHHHHHHHhCCCHHHHHHHHHHHHHhcccCcEEEEcCCEE--EEecCcH----HHHH------H
Confidence 3344444543 44579999999999999999988765433321000000000000 0111100 0010 1
Q ss_pred HHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 450 LDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 450 L~~~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
+ ...+++.+|....+.+.|. .+..|+.++|+.|.||++||.+.+.+.-..|..
T Consensus 86 ~---~~~~~~~eR~~~Il~~LL~-~~~isi~~Lae~l~VS~sTi~~DLk~i~~~L~~ 138 (485)
T 3sqn_A 86 L---WSLFLPQSISIQLLKELLF-TKELVTTSFLSTSGVSYETLKRHIKKMNQALRD 138 (485)
T ss_dssp H---HHHHGGGSHHHHHHHHHHH-CSEEEHHHHHHHHTCCHHHHHHHHHHHHHHHGG
T ss_pred H---HHhcCHHHHHHHHHHHHHh-CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 1 1123344444433433333 348999999999999999999999998888865
No 112
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=82.17 E-value=3.2 Score=35.79 Aligned_cols=51 Identities=8% Similarity=0.039 Sum_probs=38.6
Q ss_pred HHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 447 RLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 447 ~~~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
...+...+. .|++.+..||..-+. .++.|..+||+.+|+|+.+|.+++.+-
T Consensus 26 ~~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~~vs~~l~~L 78 (152)
T 3bj6_A 26 TAAVERGTLREGVTVGQRAILEGLSL---TPGATAPQLGAALQMKRQYISRILQEV 78 (152)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH---STTEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 334444443 489999999887653 357999999999999999998766554
No 113
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=82.12 E-value=0.63 Score=41.49 Aligned_cols=40 Identities=18% Similarity=0.038 Sum_probs=30.0
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++..++.-|...+ ..++|..+||+.||||+.+|+++..+
T Consensus 25 ~~s~e~r~~ii~l~----~~G~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 25 PLPEVVRQRIVDLA----HQGVRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp SSCHHHHHHHHHHH----HHTCCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 35555555444444 25789999999999999999999865
No 114
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=82.06 E-value=2.8 Score=36.32 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=39.9
Q ss_pred HHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 446 LRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 446 l~~~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
+...+...+. .|++.+..||..-+. .++.|..+||+.+|+|+.+|.+++.+-.
T Consensus 32 ~~~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~tvs~~l~~Le 86 (153)
T 2pex_A 32 MHKLYRGLLKALDLTYPQYLVMLVLWE---TDERSVSEIGERLYLDSATLTPLLKRLQ 86 (153)
T ss_dssp HHHHHHHHTTTTTCCHHHHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHh---CCCcCHHHHHHHhCCCcccHHHHHHHHH
Confidence 3444455553 489999999877653 3579999999999999999997766543
No 115
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=81.98 E-value=1.6 Score=35.88 Aligned_cols=39 Identities=15% Similarity=0.279 Sum_probs=29.0
Q ss_pred CHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 458 KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 458 ~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
+|....||..-.. .+++|..|||+.+|+|+++|++++..
T Consensus 26 ~~~Rl~IL~~l~~---~~~~~~~ela~~l~is~stvs~hL~~ 64 (99)
T 2zkz_A 26 HPMRLKIVNELYK---HKALNVTQIIQILKLPQSTVSQHLCK 64 (99)
T ss_dssp SHHHHHHHHHHHH---HSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 5666677733221 24799999999999999999977653
No 116
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=81.97 E-value=3.2 Score=35.62 Aligned_cols=46 Identities=15% Similarity=0.301 Sum_probs=32.5
Q ss_pred HHHHHhcC-CHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 450 LDDVLDSL-KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 450 L~~~L~~L-~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
+..++..| ++....||.+-. ..+++..|||+.+|+|+++|++++..
T Consensus 36 ~~~~~kaL~~~~rl~IL~~L~----~~~~s~~ela~~lgis~stvs~~L~~ 82 (122)
T 1r1t_A 36 LAEFFAVLADPNRLRLLSLLA----RSELCVGDLAQAIGVSESAVSHQLRS 82 (122)
T ss_dssp HHHHHHHHCCHHHHHHHHHHT----TCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH----cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 33334333 555666776544 24799999999999999999977654
No 117
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=81.87 E-value=1.1 Score=34.60 Aligned_cols=23 Identities=26% Similarity=0.101 Sum_probs=20.8
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q 010092 477 RTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 477 ~Tl~EIA~~LgISrerVRqie~r 499 (518)
+|+.|||+.+|||+.+|+++++.
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng 23 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVING 23 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 48899999999999999998874
No 118
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=81.86 E-value=2.3 Score=34.13 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 474 KGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 474 ~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
++..|..+||+.||+|+..|.+++.+-
T Consensus 27 ~~~~Ta~~IAkkLg~sK~~vNr~LY~L 53 (75)
T 1sfu_A 27 NDYTTAISLSNRLKINKKKINQQLYKL 53 (75)
T ss_dssp TCEECHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345899999999999987777665543
No 119
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=81.65 E-value=3.3 Score=35.78 Aligned_cols=50 Identities=10% Similarity=0.072 Sum_probs=38.3
Q ss_pred HHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 449 ALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 449 ~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
.+...+. .|++.|..||..-+- .++.|..+||+.+|+|+++|.++..+-.
T Consensus 29 ~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~Le 80 (154)
T 2qww_A 29 YADQNAASLGLTIQQLAMINVIYS---TPGISVADLTKRLIITGSSAAANVDGLI 80 (154)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHH---STTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444443 499999999887653 3579999999999999999997766543
No 120
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=81.61 E-value=1.6 Score=32.53 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=21.9
Q ss_pred CCC----HHHHHHHhCCCHHHHHHHHHHH
Q 010092 476 DRT----LGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 476 ~~T----l~EIA~~LgISrerVRqie~rA 500 (518)
+.| ..+||..|||++++|+++....
T Consensus 21 g~s~~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 21 DNDCKGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp CTTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred CCCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence 567 9999999999999999997643
No 121
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=81.53 E-value=2.1 Score=39.01 Aligned_cols=42 Identities=14% Similarity=0.114 Sum_probs=32.5
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 455 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 455 ~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
..|++.++.||.+-.- ....|+.|||+.+|+|+.+|++.+.+
T Consensus 13 ~~ld~~d~~IL~~L~~---~~~~s~~eLA~~lglS~~tv~~~l~~ 54 (171)
T 2ia0_A 13 IHLDDLDRNILRLLKK---DARLTISELSEQLKKPESTIHFRIKK 54 (171)
T ss_dssp -CCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3578888888776431 24699999999999999999977654
No 122
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=81.50 E-value=2.7 Score=34.78 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=32.7
Q ss_pred HHHHHhcCC-HHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 450 LDDVLDSLK-PKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 450 L~~~L~~L~-~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
+..++..|. +....||..-. ..+.|..|||+.+|+|+.+|++++.+
T Consensus 11 ~~~~~~~l~~~~r~~IL~~L~----~~~~~~~ela~~l~is~~tv~~~l~~ 57 (114)
T 2oqg_A 11 LASVFAALSDETRWEILTELG----RADQSASSLATRLPVSRQAIAKHLNA 57 (114)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH----HSCBCHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHhCChHHHHHHHHHH----cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 444455553 55666665432 34799999999999999999977654
No 123
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=81.04 E-value=3.2 Score=36.36 Aligned_cols=55 Identities=15% Similarity=0.062 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 445 LLRLALDDVLDS--LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 445 ~l~~~L~~~L~~--L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.+...+...|.. |+..|-.||.+-+.- ...+.|..+||+.+++++++|.++..+-
T Consensus 19 ~l~~~~~~~l~~~gLt~~q~~vL~~L~~~-~~~~~t~~eLa~~l~~~~~tvs~~v~~L 75 (147)
T 4b8x_A 19 ILLGEVDAVVKPYGLTFARYEALVLLTFS-KSGELPMSKIGERLMVHPTSVTNTVDRL 75 (147)
T ss_dssp HHHHHHHHHHGGGTCCHHHHHHHHHHHTS-GGGEEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHC-CCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 344556666653 999999998876531 1246899999999999999999776654
No 124
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=80.89 E-value=3.4 Score=36.34 Aligned_cols=53 Identities=11% Similarity=0.023 Sum_probs=40.5
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 445 LLRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 445 ~l~~~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.+...+...+. .|++.|..||..-+. .++.|..|||+.+|+++.+|.+++.+-
T Consensus 30 ~~~~~~~~~l~~~glt~~q~~iL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~L 84 (162)
T 3k0l_A 30 IISKYLTEHLSALEISLPQFTALSVLAA---KPNLSNAKLAERSFIKPQSANKILQDL 84 (162)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34445555554 499999999987653 357999999999999999999776653
No 125
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=80.80 E-value=2.5 Score=36.63 Aligned_cols=51 Identities=14% Similarity=0.221 Sum_probs=38.6
Q ss_pred HHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 447 RLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 447 ~~~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
...+...+. .|++.+..||..-+. .++.|..+||+.+|+|+.+|.+++.+-
T Consensus 23 ~~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~tvs~~l~~L 75 (155)
T 1s3j_A 23 QPEMLESMEKQGVTPAQLFVLASLKK---HGSLKVSEIAERMEVKPSAVTLMADRL 75 (155)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH---HSEEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 334444443 699999999877652 247899999999999999999766554
No 126
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=80.76 E-value=2.9 Score=35.65 Aligned_cols=42 Identities=14% Similarity=0.261 Sum_probs=34.7
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.|++.+..||..-+. .++.|..+||+.+|+|+.+|.+++.+-
T Consensus 30 ~l~~~~~~iL~~l~~---~~~~~~~~la~~l~~s~~tvs~~l~~L 71 (145)
T 2a61_A 30 GITPAQFDILQKIYF---EGPKRPGELSVLLGVAKSTVTGLVKRL 71 (145)
T ss_dssp TCCHHHHHHHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCchhHHHHHHHH
Confidence 499999999887653 357999999999999999998766554
No 127
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=80.51 E-value=2.5 Score=36.04 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=39.4
Q ss_pred HHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 446 LRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 446 l~~~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
+...+...+. .|++.+..||..-+. .++.|..+||+.+|+|+.+|.++..+-.
T Consensus 14 ~~~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~~la~~l~~s~~~vs~~l~~Le 68 (144)
T 1lj9_A 14 LDSISNIEFKELSLTRGQYLYLVRVCE---NPGIIQEKIAELIKVDRTTAARAIKRLE 68 (144)
T ss_dssp HHHHHHHHTGGGTCTTTHHHHHHHHHH---STTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH---CcCcCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 3444555554 489999988877653 3578999999999999999997665543
No 128
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=80.50 E-value=1.7 Score=36.21 Aligned_cols=40 Identities=33% Similarity=0.211 Sum_probs=29.2
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 010092 457 LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEV 498 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~ 498 (518)
+.+....||...+- .++..|..|||+.+|+|+.+|++.+.
T Consensus 16 ~~~~~l~Il~~l~~--~g~~~s~~eLa~~lgvs~~tV~~~L~ 55 (110)
T 1q1h_A 16 LGDDVIDVLRILLD--KGTEMTDEEIANQLNIKVNDVRKKLN 55 (110)
T ss_dssp SCSTTHHHHHHHHH--HCSCBCHHHHHHTTTSCHHHHHHHHH
T ss_pred cChHHHHHHHHHHH--cCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 45666677765431 23468999999999999999995443
No 129
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=80.26 E-value=1.5 Score=35.66 Aligned_cols=45 Identities=20% Similarity=0.082 Sum_probs=33.7
Q ss_pred cCCHHHHHHHhHHhcCC-CCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLD-GKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~-~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.|+.++..||...+... ++...|..+||+.+|+++++|.+++.+-
T Consensus 9 ~l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~L 54 (95)
T 2qvo_A 9 LFKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKF 54 (95)
T ss_dssp HSCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 47888888887654321 2233899999999999999999876554
No 130
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=80.23 E-value=1.4 Score=36.70 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=28.3
Q ss_pred HHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 459 PKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 459 ~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
+|...|+.+.. ..+.|+.+||+.+|||..||+..++.-
T Consensus 7 ~R~~~I~~~l~----~~~~ti~dlA~~~gVS~~TVsR~L~~~ 44 (93)
T 2l0k_A 7 ERTIKIGKYIV----ETKKTVRVIAKEFGVSKSTVHKDLTER 44 (93)
T ss_dssp HHHHHHHHHHH----HHCCCHHHHHHHHTSCHHHHHHHHTTH
T ss_pred HHHHHHHHHHH----HcCCCHHHHHHHHCCCHHHHHHHHcCC
Confidence 35555555443 234899999999999999999988753
No 131
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=80.19 E-value=2.5 Score=36.39 Aligned_cols=43 Identities=16% Similarity=0.117 Sum_probs=35.0
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
.|++.+..||..-+. .++.|..|||+.+|+|+++|.++..+-.
T Consensus 37 ~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~tvs~~l~~Le 79 (148)
T 3nrv_A 37 GIGMTEWRIISVLSS---ASDCSVQKISDILGLDKAAVSRTVKKLE 79 (148)
T ss_dssp TCCHHHHHHHHHHHH---SSSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc---CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 488888888877653 3589999999999999999997766543
No 132
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=80.16 E-value=2.8 Score=36.74 Aligned_cols=42 Identities=7% Similarity=-0.019 Sum_probs=34.9
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.|++.+..||..-+. .++.|..+||+.+|+|+.+|.+++.+-
T Consensus 49 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~is~~tvs~~l~~L 90 (162)
T 3cjn_A 49 GLSTAKMRALAILSA---KDGLPIGTLGIFAVVEQSTLSRALDGL 90 (162)
T ss_dssp TCCHHHHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCChhHHHHHHHHH
Confidence 499999999887663 357999999999999999999776554
No 133
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=80.03 E-value=2.9 Score=35.78 Aligned_cols=52 Identities=15% Similarity=0.017 Sum_probs=39.5
Q ss_pred HHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 446 LRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 446 l~~~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
+...+...+. .|++.|..||..-+. .++.|..|||+.+|+|+++|.++..+-
T Consensus 22 ~~~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~eLa~~l~~~~~~vs~~l~~L 75 (143)
T 3oop_A 22 MHLFLMRSIASYDVTPEQWSVLEGIEA---NEPISQKEIALWTKKDTPTVNRIVDVL 75 (143)
T ss_dssp HHHHHHHHTTTSSSCHHHHHHHHHHHH---HSSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCCHhhHHHHHHHH
Confidence 3444555554 389999999887653 358999999999999999999766554
No 134
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=79.94 E-value=4.1 Score=34.45 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCHHHHHHHhHHhcC-CCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 447 RLALDDVLDSLKPKESLVIRQRFGL-DGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 447 ~~~L~~~L~~L~~rEr~VL~lryGL-~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
...|...+..|++.|+.|.....-= +....+|..|||+..|+|..+|-+.-++
T Consensus 5 ~~~I~~~~~~lt~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kk 58 (107)
T 3iwf_A 5 LYKIDNQYPYFTKNEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSKK 58 (107)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhCHHHHHHCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4567788899999999998654310 0124699999999999999999876543
No 135
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=79.89 E-value=3 Score=37.11 Aligned_cols=51 Identities=8% Similarity=-0.014 Sum_probs=38.8
Q ss_pred HHHHHHHHh----cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 447 RLALDDVLD----SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 447 ~~~L~~~L~----~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
...+...+. .|++.|..||..-+- .++.|..|||+.+|+|+.+|.+++.+-
T Consensus 29 ~~~~~~~l~~~~~~lt~~~~~iL~~L~~---~~~~t~~eLa~~l~is~~tvs~~l~~L 83 (168)
T 2nyx_A 29 VAISAHSIAQVDENITIPQFRTLVILSN---HGPINLATLATLLGVQPSATGRMVDRL 83 (168)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHH---HCSEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHH---cCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 334444443 699999999877653 257999999999999999999776553
No 136
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=79.76 E-value=1 Score=41.73 Aligned_cols=45 Identities=18% Similarity=0.119 Sum_probs=31.8
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCC--CHHHHHHHhCCC-HHHHHHHHHH
Q 010092 455 DSLKPKESLVIRQRFGLDGKGDR--TLGEIAGNLNIS-REMVRKHEVK 499 (518)
Q Consensus 455 ~~L~~rEr~VL~lryGL~~~e~~--Tl~EIA~~LgIS-rerVRqie~r 499 (518)
..|+++|+.++..---+-...++ |..|+|+.+|+| +++|++++.+
T Consensus 2 ~~lt~~q~~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~ 49 (202)
T 1jhf_A 2 KALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKA 49 (202)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHH
Confidence 35788888776442211001255 999999999999 9999999864
No 137
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=79.21 E-value=35 Score=31.18 Aligned_cols=160 Identities=18% Similarity=0.109 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHHHHHHHHhCCCC
Q 010092 306 DLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLESTSIMQVRGEIQRAKLELLFELKRVP 385 (518)
Q Consensus 306 DLIQEG~IGLirAvekFDp~rG~kFSTYA~~wIRqaI~raI~~sr~iRlP~~~~e~~~~~~~~ki~ka~~eL~~elgR~P 385 (518)
+-+.+.-.-+++-+...+.-+|.+....+.-.+.-++ ...|.+.
T Consensus 27 ~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAc------------------------------------r~~~~p~ 70 (200)
T 1ais_B 27 RHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAAC------------------------------------RLLKVPR 70 (200)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHH------------------------------------HHHTCCC
T ss_pred HHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHH------------------------------------HHcCCCC
Confidence 5666666667766666666667654444433332222 1235677
Q ss_pred CHHHHHHHhCCCHHHHHHHHHhcCCccccCCCcC-CchhhhhcccccCCCCcchhhhHHHHHHHHHHHHHhc-----CCH
Q 010092 386 TDEEIIQGVNISPERYREVMKASKPILSLHSRHG-VTQEEFINGITDVDGVENENQRQPALLRLALDDVLDS-----LKP 459 (518)
Q Consensus 386 T~eELA~~lgis~e~v~~~l~~~~~~~SLD~~~~-~~~eel~~~l~d~~~~~~ee~~~~~~l~~~L~~~L~~-----L~~ 459 (518)
+..||+..++++..++....+.-...+.++.+.. .+...++..+...-+. +++ + ...-...++.++.. -+|
T Consensus 71 ~l~di~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l-~~~-v-~~~A~~i~~~~~~~~~~~gr~P 147 (200)
T 1ais_B 71 TLDEIADIARVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGL-SEK-V-RRRAIEILDEAYKRGLTSGKSP 147 (200)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTC-CHH-H-HHHHHHHHHHHHHTTCCTTSCH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCC-CHH-H-HHHHHHHHHHHHHcCcccCCCH
Confidence 8889999999998888765543222222222110 1112222211111111 111 1 11112223333321 233
Q ss_pred HHHH--HHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Q 010092 460 KESL--VIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 505 (518)
Q Consensus 460 rEr~--VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR 505 (518)
.--- .|.+---+. +.+.|.+||+...|+|..+|++....-.+.|.
T Consensus 148 ~~iAaAaly~A~~~~-~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 148 AGLVAAALYIASLLE-GEKRTQREVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHHHHHHHHHHHHT-TCCCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh-CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 3221 122211111 25789999999999999999988777666654
No 138
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=79.14 E-value=5.8 Score=34.19 Aligned_cols=53 Identities=9% Similarity=0.062 Sum_probs=39.1
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 445 LLRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 445 ~l~~~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.+...+...+. .|++.|..||..-+- ..++.|..|||+.+|+++.+|.++..+
T Consensus 23 ~~~~~~~~~l~~~glt~~q~~vL~~l~~--~~~~~t~~eLa~~l~i~~~tvs~~l~~ 77 (150)
T 3fm5_A 23 MVLGAVNKALVPTGLRVRSYSVLVLACE--QAEGVNQRGVAATMGLDPSQIVGLVDE 77 (150)
T ss_dssp HHHHHHHHHHGGGTCCHHHHHHHHHHHH--STTCCCSHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHh--CCCCcCHHHHHHHHCCCHhHHHHHHHH
Confidence 34445555554 389999999886542 134689999999999999999976554
No 139
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=79.12 E-value=0.0015 Score=63.89 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHh
Q 010092 383 RVPTDEEIIQGVNISPERYREVMKA 407 (518)
Q Consensus 383 R~PT~eELA~~lgis~e~v~~~l~~ 407 (518)
..-|..|||+.||+|+..|...+..
T Consensus 211 ~G~s~~EIA~~L~iS~~TVk~~l~r 235 (258)
T 3clo_A 211 KGLSSKEIAATLYISVNTVNRHRQN 235 (258)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4569999999999999998876654
No 140
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=78.97 E-value=12 Score=30.57 Aligned_cols=38 Identities=13% Similarity=0.056 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 010092 370 IQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKA 407 (518)
Q Consensus 370 i~ka~~eL~~elgR~PT~eELA~~lgis~e~v~~~l~~ 407 (518)
+.++...+...+...+++++||+.+|+|+..+..+.+.
T Consensus 4 i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 4 VRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 34445556666777899999999999999999887654
No 141
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=78.87 E-value=3 Score=36.53 Aligned_cols=53 Identities=6% Similarity=0.090 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 445 LLRLALDDVLDS--LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 445 ~l~~~L~~~L~~--L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.+...+...+.. |++.|..||..-+. .++.|..|||+.+|+++.+|.++..+-
T Consensus 34 ~~~~~~~~~l~~~~lt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~L 88 (159)
T 3s2w_A 34 YGQIYIGKKIEPYGIGSGQFPFLMRLYR---EDGINQESLSDYLKIDKGTTARAIQKL 88 (159)
T ss_dssp HHHHHHHHHHGGGTCCTTTHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 344455555644 89999999877653 367999999999999999999776654
No 142
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=78.84 E-value=3.2 Score=38.70 Aligned_cols=39 Identities=13% Similarity=0.212 Sum_probs=32.2
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 457 LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
+++.+..||.+-. + .+.|..|||+.+|+|.++|++++.+
T Consensus 18 ~d~~~~~IL~~L~--~--~~~s~~eLA~~lglS~stv~~~l~~ 56 (192)
T 1uly_A 18 LEDTRRKILKLLR--N--KEMTISQLSEILGKTPQTIYHHIEK 56 (192)
T ss_dssp HSHHHHHHHHHHT--T--CCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--c--CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5788888887654 2 4799999999999999999977655
No 143
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=78.59 E-value=3.8 Score=32.17 Aligned_cols=41 Identities=7% Similarity=-0.028 Sum_probs=32.6
Q ss_pred cCCHHHHHHHhHHhcCCCC-CCCCHHHHHHHh-----CCCHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGK-GDRTLGEIAGNL-----NISREMVRKHEV 498 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~-e~~Tl~EIA~~L-----gISrerVRqie~ 498 (518)
.++++...||.+... .. .+.|..||++.+ ++|..||++.+.
T Consensus 14 ~~t~~r~~IL~~l~~--~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~ 60 (83)
T 2fu4_A 14 KVTLPRLKILEVLQE--PDNHHVSAEDLYKRLIDMGEEIGLATVYRVLN 60 (83)
T ss_dssp CCCHHHHHHHHHHTS--GGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHh--CCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHH
Confidence 478888888876542 12 479999999999 999999996654
No 144
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=78.53 E-value=2.3 Score=35.94 Aligned_cols=52 Identities=12% Similarity=0.106 Sum_probs=39.4
Q ss_pred HHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 447 RLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 447 ~~~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
...+...+. .|++.+..||..-+. .++.|..+||+.+|+|+.+|.++..+-.
T Consensus 19 ~~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~~~~ela~~l~~~~~tvs~~l~~L~ 72 (139)
T 3bja_A 19 QKNLDKAIEQYDISYVQFGVIQVLAK---SGKVSMSKLIENMGCVPSNMTTMIQRMK 72 (139)
T ss_dssp HHHHHHHTGGGTCCHHHHHHHHHHHH---SCSEEHHHHHHHCSSCCTTHHHHHHHHH
T ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhHHHHHHHHHH
Confidence 344445544 489999999887653 3579999999999999999997765543
No 145
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=78.33 E-value=26 Score=28.56 Aligned_cols=37 Identities=5% Similarity=-0.027 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 010092 371 QRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKA 407 (518)
Q Consensus 371 ~ka~~eL~~elgR~PT~eELA~~lgis~e~v~~~l~~ 407 (518)
.++...+...+....++++||+.+|+|+..+..+.+.
T Consensus 8 ~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 44 (108)
T 3oou_A 8 QNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQK 44 (108)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3444555666777899999999999999999887654
No 146
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=78.28 E-value=6.2 Score=34.58 Aligned_cols=55 Identities=20% Similarity=0.178 Sum_probs=37.7
Q ss_pred HHHHHHHHHh--cCCHHHHHHHhHHhcCCC--CCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 446 LRLALDDVLD--SLKPKESLVIRQRFGLDG--KGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 446 l~~~L~~~L~--~L~~rEr~VL~lryGL~~--~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
+...+...|. .|++.|-.||..-+-..+ ++++|..|||+.+++++.+|.+++.+-
T Consensus 18 ~~~~~~~~l~~~gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~L 76 (148)
T 4fx0_A 18 LGQAYDRALRPSGLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVM 76 (148)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 3444555664 389999999877654322 245899999999999999999877664
No 147
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=78.28 E-value=1.9 Score=36.52 Aligned_cols=46 Identities=22% Similarity=0.357 Sum_probs=32.7
Q ss_pred HHHHHhcC-CHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 450 LDDVLDSL-KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 450 L~~~L~~L-~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
+..++..| +|....||.+-. ..++|..|||+.+|+|+.+|++++..
T Consensus 8 ~~~~~~al~~~~R~~Il~~L~----~~~~~~~eLa~~l~is~~tvs~hL~~ 54 (118)
T 3f6o_A 8 LNGIFQALADPTRRAVLGRLS----RGPATVSELAKPFDMALPSFMKHIHF 54 (118)
T ss_dssp HHHHHHHHTSHHHHHHHHHHH----TCCEEHHHHHTTCCSCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH----hCCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 34444444 455566666554 35789999999999999999976543
No 148
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=78.24 E-value=3.5 Score=32.97 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHh
Q 010092 382 KRVPTDEEIIQGVNISPERYREVMKA 407 (518)
Q Consensus 382 gR~PT~eELA~~lgis~e~v~~~l~~ 407 (518)
|.+||..|||+.+|+|...|+.-|..
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~ 47 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQ 47 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 88999999999999999999887764
No 149
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=77.50 E-value=5.2 Score=34.29 Aligned_cols=38 Identities=13% Similarity=0.144 Sum_probs=31.3
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.+++.+-.-++... ++|..++|+.+|+|+.+|+++++-
T Consensus 70 ~~~~~~l~~~R~~~------glsq~~la~~~g~s~~~i~~~E~g 107 (133)
T 3o9x_A 70 TVAPEFIVKVRKKL------SLTQKEASEIFGGGVNAFSRYEKG 107 (133)
T ss_dssp TCCHHHHHHHHHHT------TCCHHHHHHHHCSCTTHHHHHHHT
T ss_pred CCCHHHHHHHHHHc------CCCHHHHHHHHCCCHHHHHHHHCC
Confidence 36776666666666 689999999999999999999974
No 150
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=77.38 E-value=3.1 Score=35.56 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=29.7
Q ss_pred CHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 458 KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 458 ~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
++....||.+-.. .+++|..|||+.+|+|+++|++++..
T Consensus 41 ~~~rl~IL~~L~~---~~~~s~~eLa~~l~is~stvs~~L~~ 79 (122)
T 1u2w_A 41 DENRAKITYALCQ---DEELCVCDIANILGVTIANASHHLRT 79 (122)
T ss_dssp SHHHHHHHHHHHH---SSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 4556667665431 24799999999999999999987664
No 151
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=77.36 E-value=1.7 Score=31.86 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..++|+.+|+|+.+|+++++.
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~g 37 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEKN 37 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4789999999999999999999873
No 152
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=77.14 E-value=2.9 Score=30.97 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHh-----CCCHHHHHHHHH
Q 010092 474 KGDRTLGEIAGNL-----NISREMVRKHEV 498 (518)
Q Consensus 474 ~e~~Tl~EIA~~L-----gISrerVRqie~ 498 (518)
....|.+||++.| +||..||++.+.
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 3579999999999 999999998887
No 153
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=76.98 E-value=3.6 Score=35.58 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=37.8
Q ss_pred HHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 448 LALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 448 ~~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
..+...+. .|++.|..||..- . .++.|..|||+.+|+|+++|.++..+-
T Consensus 25 ~~~~~~~~~~~lt~~q~~iL~~l-~---~~~~t~~eLa~~l~~~~~~vs~~l~~L 75 (151)
T 3kp7_A 25 KLLKDLQTEYGISAEQSHVLNML-S---IEALTVGQITEKQGVNKAAVSRRVKKL 75 (151)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHH-H---HSCBCHHHHHHHHCSCSSHHHHHHHHH
T ss_pred HHHHHHhhcCCCCHHHHHHHHHH-H---cCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444443 4999999988765 2 478999999999999999999766554
No 154
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=76.96 E-value=2.4 Score=32.75 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=28.7
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 457 LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
+++.+-.-++... ++|..|+|+.+|||+.+|+++++-
T Consensus 11 ~~g~~lr~~R~~~------gltq~elA~~~gvs~~tis~~E~G 47 (73)
T 3fmy_A 11 VAPEFIVKVRKKL------SLTQKEASEIFGGGVNAFSRYEKG 47 (73)
T ss_dssp CCHHHHHHHHHHT------TCCHHHHHHHHCSCTTHHHHHHTT
T ss_pred CCHHHHHHHHHHc------CCCHHHHHHHhCcCHHHHHHHHcC
Confidence 4444444455555 689999999999999999999864
No 155
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=76.94 E-value=17 Score=29.94 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 010092 370 IQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKA 407 (518)
Q Consensus 370 i~ka~~eL~~elgR~PT~eELA~~lgis~e~v~~~l~~ 407 (518)
+.++...+...+...+++++||+.+|+|+..+..+.+.
T Consensus 9 i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 9 LTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp HHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 44455555666777899999999999999999888764
No 156
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=76.82 E-value=2.8 Score=33.04 Aligned_cols=25 Identities=16% Similarity=-0.024 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..++|+.+|||+.+|+++++.
T Consensus 30 ~glsq~elA~~~gis~~~is~~e~g 54 (83)
T 2a6c_A 30 SGLTQFKAAELLGVTQPRVSDLMRG 54 (83)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4789999999999999999999874
No 157
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=76.60 E-value=6.2 Score=33.65 Aligned_cols=42 Identities=7% Similarity=0.011 Sum_probs=34.3
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
.|++.+..||..-+. .++ |..+||+.+|+|+++|.++..+-.
T Consensus 34 ~lt~~~~~iL~~l~~---~~~-~~~~la~~l~~~~~tvs~~l~~Le 75 (144)
T 3f3x_A 34 NLSYLDFSILKATSE---EPR-SMVYLANRYFVTQSAITAAVDKLE 75 (144)
T ss_dssp SCCHHHHHHHHHHHH---SCE-EHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCC-CHHHHHHHHCCChhHHHHHHHHHH
Confidence 689999999887663 234 999999999999999997766543
No 158
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=76.50 E-value=2.3 Score=35.55 Aligned_cols=46 Identities=13% Similarity=0.150 Sum_probs=31.1
Q ss_pred HHHHHhcCC-HHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 450 LDDVLDSLK-PKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 450 L~~~L~~L~-~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
+..++..|. +....||.+-. .++.|..|||+.+|+|+++|++.++.
T Consensus 15 ~~~~~~al~~~~r~~IL~~L~----~~~~s~~eLa~~lgis~stvs~~L~~ 61 (108)
T 2kko_A 15 VARVGKALANGRRLQILDLLA----QGERAVEAIATATGMNLTTASANLQA 61 (108)
T ss_dssp HHHHHHHHTTSTTHHHHHHHT----TCCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH----cCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 344444443 33445665433 25789999999999999999976654
No 159
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=76.50 E-value=1.7 Score=33.90 Aligned_cols=24 Identities=8% Similarity=0.080 Sum_probs=22.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~r 499 (518)
++|..++|+.+|||+.+|+++++.
T Consensus 25 gltq~~lA~~~gvs~~~is~~e~g 48 (80)
T 3kz3_A 25 GLSYESVADKMGMGQSAVAALFNG 48 (80)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHhCcCHHHHHHHHcC
Confidence 689999999999999999999864
No 160
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=76.50 E-value=2.5 Score=35.87 Aligned_cols=43 Identities=19% Similarity=0.074 Sum_probs=34.9
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
.|++.+..||..-+. .++.|..+||+.+|+|+.+|.+++.+-.
T Consensus 33 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~~vs~~l~~Le 75 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQ---QGEMESYQLANQACILRPSMTGVLARLE 75 (142)
T ss_dssp TCCHHHHHHHHHHHH---HCSEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 489999998877653 3579999999999999999997765543
No 161
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=76.05 E-value=3.1 Score=32.69 Aligned_cols=43 Identities=12% Similarity=0.136 Sum_probs=34.9
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhC----CCHHHHHHHHHHH
Q 010092 455 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLN----ISREMVRKHEVKG 500 (518)
Q Consensus 455 ~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~Lg----ISrerVRqie~rA 500 (518)
..|++.|..||..-+- .++.|..||++.++ ++..+|..++.+=
T Consensus 5 ~~lt~~e~~vL~~L~~---~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL 51 (82)
T 1p6r_A 5 PQISDAELEVMKVIWK---HSSINTNEVIKELSKTSTWSPKTIQTMLLRL 51 (82)
T ss_dssp CCCCHHHHHHHHHHHT---SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc---CCCCCHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 4689999999887663 35799999999997 7999999776654
No 162
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=75.99 E-value=1.9 Score=34.62 Aligned_cols=25 Identities=20% Similarity=0.045 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.+.|..|||+.||+|..+|+..+..
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~~ 47 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLEQ 47 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 4789999999999999999977654
No 163
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=75.89 E-value=2.5 Score=32.98 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..++|+.+|||+.+|+++++-
T Consensus 22 ~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 22 KGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999875
No 164
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=75.87 E-value=4.2 Score=35.69 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=39.0
Q ss_pred HHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 446 LRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 446 l~~~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
+...+...+. .|++.|..||..-+. .++.|..|||+.+|+++.+|.+++.+-
T Consensus 38 ~~~~~~~~~~~~glt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~~vs~~l~~L 91 (161)
T 3e6m_A 38 WSSELNQALASEKLPTPKLRLLSSLSA---YGELTVGQLATLGVMEQSTTSRTVDQL 91 (161)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHH---HSEEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3334444443 499999999887653 247999999999999999999776654
No 165
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=75.84 E-value=1.9 Score=32.02 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..++|+.+|||+.+|+++++.
T Consensus 13 ~glsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4789999999999999999999864
No 166
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=75.71 E-value=21 Score=29.16 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHHHHh
Q 010092 370 IQRAKLELLFELK-RVPTDEEIIQGVNISPERYREVMKA 407 (518)
Q Consensus 370 i~ka~~eL~~elg-R~PT~eELA~~lgis~e~v~~~l~~ 407 (518)
+.++...+...+. ..+++++||+.+|+|...+..+.+.
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3445555666677 7899999999999999999887654
No 167
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=75.43 E-value=1.8 Score=34.95 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHhCCCHH-HHHHHHHH
Q 010092 474 KGDRTLGEIAGNLNISRE-MVRKHEVK 499 (518)
Q Consensus 474 ~e~~Tl~EIA~~LgISre-rVRqie~r 499 (518)
..+.|..+||+.||||.. .||+++..
T Consensus 23 ~g~~ta~eiA~~Lgit~~~aVr~hL~~ 49 (79)
T 1xmk_A 23 VSDSSALNLAKNIGLTKARDINAVLID 49 (79)
T ss_dssp TCCEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cCCcCHHHHHHHcCCCcHHHHHHHHHH
Confidence 357999999999999999 99988764
No 168
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=75.33 E-value=2.7 Score=31.31 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..++|+.+|||+++|+++++.
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~e~g 39 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4789999999999999999999864
No 169
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=75.29 E-value=3.2 Score=36.15 Aligned_cols=44 Identities=18% Similarity=0.041 Sum_probs=34.7
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLM 502 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALk 502 (518)
.|++.|..||..-+- ..+.|..+||+.+|+|+.+|.+++.+-.+
T Consensus 41 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~is~~tvs~~l~~Le~ 84 (154)
T 2eth_A 41 DMKTTELYAFLYVAL---FGPKKMKEIAEFLSTTKSNVTNVVDSLEK 84 (154)
T ss_dssp HSBHHHHHHHHHHHH---HCCBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 488888888877552 24799999999999999999977655433
No 170
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=75.24 E-value=2 Score=31.69 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..++|+.+|+|+.+|+++++.
T Consensus 17 ~g~s~~~lA~~~gis~~~i~~~e~g 41 (68)
T 2r1j_L 17 LKIRQAALGKMVGVSNVAISQWERS 41 (68)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 3689999999999999999999864
No 171
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=75.21 E-value=2 Score=32.71 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=22.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~r 499 (518)
++|..++|+.+|||+.+|+++++.
T Consensus 21 glsq~~lA~~~gis~~~is~~e~g 44 (73)
T 3omt_A 21 GKTNLWLTETLDKNKTTVSKWCTN 44 (73)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcC
Confidence 689999999999999999999874
No 172
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=75.08 E-value=2 Score=33.17 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..++|+.+|||+++|+++++.
T Consensus 14 ~glsq~~lA~~~gis~~~i~~~e~g 38 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISRQQLCNIEQS 38 (77)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 3689999999999999999999863
No 173
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=74.45 E-value=4.3 Score=34.56 Aligned_cols=51 Identities=18% Similarity=0.046 Sum_probs=38.1
Q ss_pred HHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 449 ALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 449 ~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.+...+. .|++.|..||..-+- .+.++.|..|||+.+|+++.+|.+++.+-
T Consensus 25 ~~~~~~~~~~lt~~q~~vL~~l~~-~~~~~~t~~eLa~~l~~~~~tvs~~l~~L 77 (127)
T 2frh_A 25 LKSLIKKEFSISFEEFAVLTYISE-NKEKEYYLKDIINHLNYKQPQVVKAVKIL 77 (127)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHH-TCCSEEEHHHHHHHSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHh-ccCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444454 499999999887663 11257899999999999999998766553
No 174
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=74.04 E-value=3.1 Score=35.44 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=34.4
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.|++.+..||..-+. .++.|..+||+.+|+|+.+|.+++.+-
T Consensus 34 ~l~~~~~~iL~~l~~---~~~~~~~ela~~l~~~~~tvs~~l~~L 75 (142)
T 2bv6_A 34 NLTYPQFLVLTILWD---ESPVNVKKVVTELALDTGTVSPLLKRM 75 (142)
T ss_dssp TCCHHHHHHHHHHHH---SSEEEHHHHHHHTTCCTTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 499999999877653 346899999999999999998766543
No 175
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, trans regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=73.73 E-value=4.1 Score=40.83 Aligned_cols=45 Identities=18% Similarity=0.255 Sum_probs=38.7
Q ss_pred HhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 454 LDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 454 L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
|+.||+.-+++-.+|.- +++.|++|+|+.++||.+.|...+.|-.
T Consensus 241 l~~Lp~~L~e~a~lRl~---~pdaSL~ELge~l~isKSgVnhRlrKL~ 285 (295)
T 3hyi_A 241 LENLPEDLRRVALVRLR---NKELSLRELGKKLNLTKSQIYSKLKRII 285 (295)
T ss_dssp GGGSCHHHHHHHHHHHH---CTTSCHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHH---CccccHHHHHHHhCcCHHHHHHHHHHHH
Confidence 46899999999888874 5789999999999999999987776643
No 176
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=73.72 E-value=3.2 Score=31.19 Aligned_cols=25 Identities=16% Similarity=-0.012 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..++|+.+|+|+.+|+++++.
T Consensus 25 ~g~s~~~lA~~~gis~~~i~~~e~g 49 (74)
T 1y7y_A 25 KGLSQETLAFLSGLDRSYVGGVERG 49 (74)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 4789999999999999999999864
No 177
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=73.59 E-value=4 Score=34.75 Aligned_cols=45 Identities=22% Similarity=0.166 Sum_probs=31.2
Q ss_pred cCCHHHH-HHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010092 456 SLKPKES-LVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMK 503 (518)
Q Consensus 456 ~L~~rEr-~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkK 503 (518)
.+++.++ +|+.+.+- ....+..+||+.||||+++|+++.+..-..
T Consensus 7 ~~t~e~K~~iv~~~~~---~g~~~~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 7 QLTFREKSRIIQEVEE---NPDLRKGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CCCHHHHHHHHHHHHH---CTTSCHHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred eCCHHHHHHHHHHHHH---CCCCcHHHHHHHhCCCHHHHHHHHhchhhh
Confidence 4666776 45555531 123455699999999999999998765443
No 178
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=73.58 E-value=2.5 Score=33.81 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=29.3
Q ss_pred CHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 458 KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 458 ~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
++....||..-+. .++.|..|||+.+|+|+.+|.+++++
T Consensus 15 ~~~~~~iL~~L~~---~~~~~~~ela~~l~is~~tvs~~l~~ 53 (100)
T 1ub9_A 15 NPVRLGIMIFLLP---RRKAPFSQIQKVLDLTPGNLDSHIRV 53 (100)
T ss_dssp SHHHHHHHHHHHH---HSEEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHh---cCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 4566667654331 24799999999999999999977654
No 179
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=73.45 E-value=3 Score=33.09 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..|+|+.+|||+.+|+++++-
T Consensus 26 ~gltq~elA~~~gis~~~is~~E~G 50 (86)
T 3eus_A 26 AGLTQADLAERLDKPQSFVAKVETR 50 (86)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 4789999999999999999999864
No 180
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=73.42 E-value=3.2 Score=31.50 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..++|+.+|||+.+|+++++.
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~g 46 (77)
T 2b5a_A 22 KGVSQEELADLAGLHRTYISEVERG 46 (77)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHCC
Confidence 4689999999999999999999863
No 181
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=73.31 E-value=2.6 Score=34.13 Aligned_cols=43 Identities=7% Similarity=0.057 Sum_probs=33.3
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHH----HHHhCCCHHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEI----AGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EI----A~~LgISrerVRqie~rAL 501 (518)
.|++.|..||..-+. .++.|..|| |+.+|+|+.+|.+++.+-.
T Consensus 5 ~lt~~q~~iL~~l~~---~~~~~~~el~~~la~~l~is~~tvs~~l~~Le 51 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYD---NEGIATYDLYKKVNAEFPMSTATFYDAKKFLI 51 (99)
T ss_dssp SSBCHHHHHHHHHTT---CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 377788888776552 357999999 8999999999997765543
No 182
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=73.28 E-value=9.4 Score=33.48 Aligned_cols=53 Identities=13% Similarity=0.114 Sum_probs=39.0
Q ss_pred HHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 446 LRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 446 l~~~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.+..+...|. .|++.+-.||..-+-. +++.+..|||+.+|+++++|.++..+-
T Consensus 16 ~~~~~~~~l~~~gLt~~q~~vL~~L~~~--~~~~~~~eLa~~l~~~~~tvs~~v~~L 70 (151)
T 4aik_A 16 WRALIDHRLKPLELTQTHWVTLYNINRL--PPEQSQIQLAKAIGIEQPSLVRTLDQL 70 (151)
T ss_dssp HHHHHHHHTGGGCCCHHHHHHHHHHHHS--CTTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHc--CCCCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 3445566664 3899998888765421 356888999999999999998776654
No 183
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=72.99 E-value=3.8 Score=31.15 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..++|+.+|||+++|+++++.
T Consensus 19 ~g~sq~~lA~~~gis~~~i~~~e~g 43 (78)
T 3b7h_A 19 QNLTINRVATLAGLNQSTVNAMFEG 43 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4789999999999999999999864
No 184
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=72.89 E-value=2.4 Score=33.00 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..|+|+.+|||+.+|+++++-
T Consensus 26 ~gltq~elA~~~gis~~~is~~e~g 50 (83)
T 3f6w_A 26 AGITQKELAARLGRPQSFVSKTENA 50 (83)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 3689999999999999999999863
No 185
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=72.78 E-value=2.5 Score=32.03 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..++|+.+|+|+.+|+++++.
T Consensus 17 ~gls~~~lA~~~gis~~~i~~~e~g 41 (76)
T 1adr_A 17 LKIRQAALGKMVGVSNVAISQWERS 41 (76)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3689999999999999999999863
No 186
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=72.64 E-value=3.3 Score=33.72 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..|+|+.+|||+.+|+++++-
T Consensus 36 ~glTq~eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 36 RDMKKGELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4789999999999999999999875
No 187
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=72.53 E-value=4.1 Score=31.84 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..++|+.+|||+.+|+++++.
T Consensus 24 ~glsq~~lA~~~gis~~~i~~~e~g 48 (88)
T 2wiu_B 24 NGWTQSELAKKIGIKQATISNFENN 48 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4789999999999999999999974
No 188
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=72.40 E-value=5 Score=31.87 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..++|+.+|||+.+|+++++-
T Consensus 25 ~glsq~~lA~~~gis~~~is~~e~g 49 (91)
T 1x57_A 25 KGLTQKDLATKINEKPQVIADYESG 49 (91)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5789999999999999999999973
No 189
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=72.40 E-value=3.2 Score=34.78 Aligned_cols=25 Identities=32% Similarity=0.267 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|.+|+|+.+|||+.+|+++++-
T Consensus 48 ~glTQ~eLA~~~gvs~~~is~~E~G 72 (101)
T 4ghj_A 48 RDLTQSEVAEIAGIARKTVLNAEKG 72 (101)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHCC
Confidence 5799999999999999999999963
No 190
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=72.00 E-value=7.7 Score=34.43 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=39.8
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 445 LLRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 445 ~l~~~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.+...+...+. .|++.|..||..-+.. .++.|..|||+.+|+++.+|.+++.+-
T Consensus 37 ~~~~~~~~~l~~~glt~~q~~vL~~L~~~--~~~~t~~eLa~~l~i~~~tvs~~l~~L 92 (166)
T 3deu_A 37 IWRALIDHRLKPLELTQTHWVTLHNIHQL--PPDQSQIQLAKAIGIEQPSLVRTLDQL 92 (166)
T ss_dssp HHHHHHHHHTTTTTCCHHHHHHHHHHHHS--CSSEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHc--CCCCCHHHHHHHHCCCHhhHHHHHHHH
Confidence 34445555554 3899999998776521 246999999999999999999766554
No 191
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=71.74 E-value=3.6 Score=31.88 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..++|+.+|||+.+|+++++-
T Consensus 23 ~glsq~~lA~~~gis~~~i~~~e~g 47 (82)
T 3s8q_A 23 KGMTQEDLAYKSNLDRTYISGIERN 47 (82)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 4789999999999999999999864
No 192
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=71.45 E-value=5.4 Score=34.65 Aligned_cols=53 Identities=15% Similarity=0.081 Sum_probs=39.5
Q ss_pred HHHHHHHHh---cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 447 RLALDDVLD---SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 447 ~~~L~~~L~---~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
...+...+. .|++.|..||..-+.- .++.|..+||+.+|+++.+|.++..+-.
T Consensus 32 ~~~~~~~l~~~~~l~~~~~~iL~~L~~~--~~~~~~~ela~~l~i~~~tvs~~l~~Le 87 (160)
T 3boq_A 32 FGDLNRQLLDETGLSLAKFDAMAQLARN--PDGLSMGKLSGALKVTNGNVSGLVNRLI 87 (160)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHC--TTCEEHHHHHHHCSSCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHc--CCCCCHHHHHHHHCCChhhHHHHHHHHH
Confidence 334444443 5999999998877421 3579999999999999999987765543
No 193
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=71.21 E-value=3.4 Score=32.55 Aligned_cols=25 Identities=4% Similarity=0.098 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|+.++|+.+|||+++|++++.+
T Consensus 21 ~glT~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 21 RKLSLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp TSCCHHHHHHHHSSCHHHHHHTTTS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999988664
No 194
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=71.14 E-value=2.8 Score=32.44 Aligned_cols=25 Identities=24% Similarity=0.157 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..++|+.+|||+.+|+++++-
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~g 46 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIESF 46 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4789999999999999999999873
No 195
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=71.10 E-value=4 Score=34.56 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=27.7
Q ss_pred CHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 010092 458 KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEV 498 (518)
Q Consensus 458 ~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~ 498 (518)
++....||.+-. ..+.+..|||+.+|+|+++|+++++
T Consensus 20 ~~~r~~IL~~L~----~~~~~~~eLa~~lgis~stvs~~L~ 56 (118)
T 2jsc_A 20 DPTRCRILVALL----DGVCYPGQLAAHLGLTRSNVSNHLS 56 (118)
T ss_dssp SHHHHHHHHHHH----TTCCSTTTHHHHHSSCHHHHHHHHH
T ss_pred CHHHHHHHHHHH----cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 355566766543 2468999999999999999996654
No 196
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=71.03 E-value=3.1 Score=31.56 Aligned_cols=25 Identities=16% Similarity=0.128 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..++|+.+|+|+.+|+++++.
T Consensus 22 ~g~s~~~lA~~~gis~~~i~~~e~g 46 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWCSN 46 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4789999999999999999999873
No 197
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=71.00 E-value=6.1 Score=38.29 Aligned_cols=44 Identities=11% Similarity=0.172 Sum_probs=35.2
Q ss_pred HHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 453 VLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 453 ~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
....|++.+..||..-.. ..+.|..|||+.+|+|+++|.+++++
T Consensus 146 ~~~~L~~~~~~IL~~L~~---~~~~s~~eLA~~lglsksTv~r~L~~ 189 (244)
T 2wte_A 146 LMRDYSREEMKLLNVLYE---TKGTGITELAKMLDKSEKTLINKIAE 189 (244)
T ss_dssp HHSCCCHHHHHHHHHHHH---HTCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 445799999999986431 35799999999999999999866554
No 198
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=70.90 E-value=4.9 Score=29.99 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhC--CCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLN--ISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~Lg--ISrerVRqie~r 499 (518)
.++|..++|+.+| +|+.+|+++++.
T Consensus 20 ~glsq~~lA~~~g~~is~~~i~~~e~g 46 (71)
T 2ewt_A 20 QGLSLHGVEEKSQGRWKAVVVGSYERG 46 (71)
T ss_dssp TTCCHHHHHHHTTTSSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCCcCCHHHHHHHHCC
Confidence 4789999999999 999999999874
No 199
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=70.73 E-value=4.4 Score=36.41 Aligned_cols=56 Identities=13% Similarity=0.043 Sum_probs=40.1
Q ss_pred HHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 446 LRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 446 l~~~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
+...+...+. .|++.+..||..-+.-++..+.|..+||+.+|+|+.+|.+++++-.
T Consensus 54 ~~~~~~~~l~~~glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le 111 (181)
T 2fbk_A 54 LGREIERTYAASGLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLL 111 (181)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555554 4899999998876632111248999999999999999987765543
No 200
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=70.71 E-value=3.4 Score=35.59 Aligned_cols=43 Identities=28% Similarity=0.346 Sum_probs=28.8
Q ss_pred CCHHHHHHHhHHhcC-CCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 457 LKPKESLVIRQRFGL-DGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 457 L~~rEr~VL~lryGL-~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
|++.+..+|...+-+ ....+.|..+||+.+|+|+++|++++.+
T Consensus 2 ls~~~~~~L~~i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~ 45 (142)
T 1on2_A 2 TTPSMEMYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQK 45 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 444444444443322 1124799999999999999999976654
No 201
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=70.64 E-value=2.6 Score=35.38 Aligned_cols=45 Identities=13% Similarity=0.056 Sum_probs=35.8
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhC----CCHHHHHHHHHHHHH
Q 010092 455 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLN----ISREMVRKHEVKGLM 502 (518)
Q Consensus 455 ~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~Lg----ISrerVRqie~rALk 502 (518)
..|++.|..||..-+- .++.|..|||+.++ +|+.+|.+++.+-.+
T Consensus 6 ~~lt~~~~~vL~~l~~---~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~ 54 (123)
T 1okr_A 6 YEISSAEWEVMNIIWM---KKYASANNIIEEIQMQKDWSPKTIRTLITRLYK 54 (123)
T ss_dssp CCCCHHHHHHHHHHHH---HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHh---CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHH
Confidence 4689999998876542 35799999999999 899999987766443
No 202
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=70.57 E-value=7.9 Score=35.98 Aligned_cols=49 Identities=14% Similarity=0.071 Sum_probs=37.6
Q ss_pred HHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 449 ALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 449 ~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.+...+. .|++.|..||..-+. .++.|..+||+.+|+++.+|.+++.+-
T Consensus 36 ~~~~~l~~~gLt~~q~~iL~~L~~---~~~~t~~eLa~~l~i~~stvs~~l~~L 86 (207)
T 2fxa_A 36 DWQQWLKPYDLNINEHHILWIAYQ---LNGASISEIAKFGVMHVSTAFNFSKKL 86 (207)
T ss_dssp HHHHHTGGGTCCHHHHHHHHHHHH---HTSEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH---CCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444443 489999999877653 357999999999999999998776553
No 203
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=70.52 E-value=4.6 Score=32.42 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..++|+.+|||+.+|+++++.
T Consensus 21 ~glsq~~lA~~~gis~~~is~~e~G 45 (94)
T 2kpj_A 21 SEKTQLEIAKSIGVSPQTFNTWCKG 45 (94)
T ss_dssp SSSCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhC
Confidence 5789999999999999999999864
No 204
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=70.05 E-value=3.5 Score=32.02 Aligned_cols=23 Identities=9% Similarity=0.361 Sum_probs=21.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~r 499 (518)
+ |..++|+.+|||+.+|+++++.
T Consensus 12 g-sq~~lA~~lgvs~~~is~~e~g 34 (79)
T 3bd1_A 12 G-SVSALAASLGVRQSAISNWRAR 34 (79)
T ss_dssp S-SHHHHHHHHTCCHHHHHHHHHH
T ss_pred C-CHHHHHHHHCCCHHHHHHHHHC
Confidence 6 9999999999999999999975
No 205
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=69.81 E-value=2.5 Score=34.98 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=22.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 477 RTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 477 ~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
.|..+||..+|||..+|+++..+..
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~~~~ 55 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVRQHE 55 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHHH
Confidence 7999999999999999999988754
No 206
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=69.43 E-value=3.7 Score=32.33 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=20.0
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q 010092 478 TLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 478 Tl~EIA~~LgISrerVRqie~r 499 (518)
+..++|+.||||+.+|++++..
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 4999999999999999999763
No 207
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=69.38 E-value=3.8 Score=35.03 Aligned_cols=45 Identities=7% Similarity=0.039 Sum_probs=35.3
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMK 503 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkK 503 (518)
.|++.+..||..-+. .++.|..+||+.+|+|+.+|.+++.+-.++
T Consensus 37 ~l~~~~~~iL~~l~~---~~~~~~~~la~~l~~~~~tvs~~l~~L~~~ 81 (147)
T 1z91_A 37 NITYPQYLALLLLWE---HETLTVKKMGEQLYLDSGTLTPMLKRMEQQ 81 (147)
T ss_dssp CCCHHHHHHHHHHHH---HSEEEHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCcCcHHHHHHHHHHC
Confidence 388888888876552 247899999999999999999877665443
No 208
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=69.15 E-value=5.8 Score=33.68 Aligned_cols=26 Identities=19% Similarity=0.079 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 474 KGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 474 ~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
..++|++|+|+.+|||+.+|+++++-
T Consensus 18 ~~glSq~eLA~~~gis~~~is~iE~G 43 (112)
T 2wus_R 18 ERRITLLDASLFTNINPSKLKRIEEG 43 (112)
T ss_dssp TTTCCHHHHHHHSSCCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 46899999999999999999999975
No 209
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=68.81 E-value=4.2 Score=35.01 Aligned_cols=52 Identities=10% Similarity=0.013 Sum_probs=32.5
Q ss_pred HHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 448 LALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 448 ~~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
..+...+. .|++.|..||..-+.- +.++.|..+||+.+|+++.+|.++..+-
T Consensus 28 ~~~~~~~~~~glt~~q~~vL~~l~~~-~~~~~t~~eLa~~l~~~~~~vs~~l~~L 81 (148)
T 3jw4_A 28 TSADARLAELGLNSQQGRMIGYIYEN-QESGIIQKDLAQFFGRRGASITSMLQGL 81 (148)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH-TTTCCCHHHHHHC------CHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHhC-CCCCCCHHHHHHHHCCChhHHHHHHHHH
Confidence 33444443 4999999998876531 1258999999999999999998766553
No 210
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=68.80 E-value=2.2 Score=33.11 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 010092 476 DRTLGEIAGNLNISREMVRKHEV 498 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~ 498 (518)
..|+.|||+..|||+.+|+.+++
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHc
Confidence 36999999999999999998764
No 211
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=68.54 E-value=8.6 Score=30.71 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
...|..|||+.||||..+||..+..-
T Consensus 15 g~vsv~eLa~~l~VS~~TIRrdL~~L 40 (78)
T 1xn7_A 15 GRMEAAQISQTLNTPQPMINAMLQQL 40 (78)
T ss_dssp CSBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 47899999999999999999877653
No 212
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=68.37 E-value=4.2 Score=33.09 Aligned_cols=25 Identities=20% Similarity=0.132 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..++|+.+|||+.+|+++++-
T Consensus 42 ~glsq~elA~~lgvs~~~is~~E~G 66 (99)
T 2ppx_A 42 LKLTQEEFSARYHIPLGTLRDWEQG 66 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 4789999999999999999999863
No 213
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=68.35 E-value=5.5 Score=36.26 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEV 498 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~ 498 (518)
.++|+.+||+.||+|+++|++++.
T Consensus 157 ~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 157 QGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHh
Confidence 578999999999999999998764
No 214
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=68.16 E-value=3.4 Score=32.75 Aligned_cols=25 Identities=8% Similarity=-0.045 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..++|+.+|||+.+|+++++.
T Consensus 29 ~glsq~~lA~~~gis~~~is~~e~g 53 (92)
T 1lmb_3 29 LGLSQESVADKMGMGQSGVGALFNG 53 (92)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3689999999999999999999874
No 215
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=68.01 E-value=3.5 Score=33.93 Aligned_cols=44 Identities=14% Similarity=0.027 Sum_probs=33.8
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 455 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 455 ~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
..|++.|..|+..-+-. |.++.+.+|||+.+|++..+|..++.+
T Consensus 16 ~~Lt~~q~~Vl~~I~~~-g~~gi~qkeLa~~~~l~~~tvt~iLk~ 59 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDA-GNKGIWSRDVRYKSNLPLTEINKILKN 59 (91)
T ss_dssp CCSCSSHHHHHHHHHHH-CTTCEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHc-CCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 45788888888776621 135899999999999999998866544
No 216
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=67.57 E-value=2.2 Score=32.09 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=19.7
Q ss_pred CCHHHHHHHhCCCHHHHHHHH
Q 010092 477 RTLGEIAGNLNISREMVRKHE 497 (518)
Q Consensus 477 ~Tl~EIA~~LgISrerVRqie 497 (518)
.|..++|+.+|||+.+|++++
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHCC
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 389999999999999999996
No 217
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=67.16 E-value=4.9 Score=37.48 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEV 498 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~ 498 (518)
.++|..+||+.||+|+.+|.+++.
T Consensus 174 ~G~s~~~Ia~~l~is~~tv~r~l~ 197 (209)
T 2r0q_C 174 EGQAISKIAKEVNITRQTVYRIKH 197 (209)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHh
Confidence 579999999999999999988754
No 218
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=67.08 E-value=18 Score=32.99 Aligned_cols=49 Identities=16% Similarity=0.079 Sum_probs=33.6
Q ss_pred HhcCCHHHHHHHhH-----HhcC-----CCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 454 LDSLKPKESLVIRQ-----RFGL-----DGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 454 L~~L~~rEr~VL~l-----ryGL-----~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
+...+..+|..-.+ +||- .-.-..|.++||..+|+|+++|. |++++|++
T Consensus 148 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 206 (232)
T 2gau_A 148 LTQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAI----RTLSTFVS 206 (232)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHH----HHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 34578888766444 5543 01236899999999999999988 45555653
No 219
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=66.97 E-value=4.7 Score=34.42 Aligned_cols=43 Identities=16% Similarity=0.046 Sum_probs=32.3
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 457 LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
|++.+..||..-+.- .++.|..+||+.+|+|+.+|.++..+-.
T Consensus 33 l~~~~~~iL~~l~~~--~~~~~~~~la~~l~i~~~~vs~~l~~Le 75 (147)
T 2hr3_A 33 VQFSQLVVLGAIDRL--GGDVTPSELAAAERMRSSNLAALLRELE 75 (147)
T ss_dssp HHHHHHHHHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc--CCCCCHHHHHHHhCCChhhHHHHHHHHH
Confidence 567777777665420 2579999999999999999997765543
No 220
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=66.96 E-value=4.3 Score=30.97 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=22.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
=++..|+|+.+|||+++|.++.+..
T Consensus 10 ~l~~~eva~~lgvsrstiy~~~~~g 34 (66)
T 1z4h_A 10 LVDLKFIMADTGFGKTFIYDRIKSG 34 (66)
T ss_dssp EECHHHHHHHHSSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHCC
Confidence 3689999999999999999998865
No 221
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=66.80 E-value=6.6 Score=34.63 Aligned_cols=55 Identities=9% Similarity=0.036 Sum_probs=37.7
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 445 LLRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 445 ~l~~~L~~~L~--~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.+...+...+. .|++.|..||..-+.. |.++.|..+||+.+|+++.+|.+++.+-
T Consensus 30 ~~~~~~~~~~~~~glt~~q~~vL~~l~~~-~~~~~t~~eLa~~l~~~~~tvs~~l~~L 86 (168)
T 3u2r_A 30 RMKAIEEEIFSQFELSAQQYNTLRLLRSV-HPEGMATLQIADRLISRAPDITRLIDRL 86 (168)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHH-TTSCEEHHHHHHHC---CTHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHhc-CCCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 34445555554 3899999998775532 1258999999999999999999776654
No 222
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=66.80 E-value=4.8 Score=34.55 Aligned_cols=25 Identities=16% Similarity=0.092 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..|+|+.+|||+.+|+++++-
T Consensus 52 ~glTQ~eLA~~lGis~~~Is~iE~G 76 (120)
T 2o38_A 52 ARLSQAAAAARLGINQPKVSALRNY 76 (120)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999873
No 223
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=66.67 E-value=3.7 Score=34.36 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=22.9
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 475 GDR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 475 e~~-Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
..+ |..+||+.||||+.+|| +|+++|..
T Consensus 41 ~~lps~~eLa~~lgVSr~tVr----~al~~L~~ 69 (102)
T 2b0l_A 41 EGLLVASKIADRVGITRSVIV----NALRKLES 69 (102)
T ss_dssp EEEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CcCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 345 99999999999999999 46666654
No 224
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=66.49 E-value=5.1 Score=32.92 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|.+++|+.+|||+.+|+++++-
T Consensus 40 ~gltq~elA~~~gis~~~is~iE~G 64 (99)
T 3g5g_A 40 KGMTQEDLAYKSNLDRTYISGIERN 64 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 4789999999999999999999874
No 225
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=66.42 E-value=40 Score=28.01 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 010092 372 RAKLELLFELKRVPTDEEIIQGVNISPERYREVMKA 407 (518)
Q Consensus 372 ka~~eL~~elgR~PT~eELA~~lgis~e~v~~~l~~ 407 (518)
++...+...+....++++||+.+|+|+..+..+.+.
T Consensus 11 ~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 11 RVCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 334444555667889999999999999988877643
No 226
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=66.16 E-value=4.9 Score=32.14 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=22.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~r 499 (518)
++|..++|+.+|||+.+|+++++.
T Consensus 21 gltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 21 NVSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcC
Confidence 689999999999999999999874
No 227
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=65.85 E-value=7.9 Score=36.31 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=33.9
Q ss_pred HhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 454 LDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 454 L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
..-|+..|+-.=..++ |+.+...+.+++|+.+|||+..|++.+.-|
T Consensus 21 ~rplS~yErg~~y~r~-L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A 66 (189)
T 3mky_B 21 YRPTSAYERGQRYASR-LQNEFAGNISALADAENISRKIITRCINTA 66 (189)
T ss_dssp --CCCHHHHHHHHHHH-HHTTTTTCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-HhcCcccCHHHHHHHHCCCHHHHHHHHHHh
Confidence 3457777777766666 444567899999999999988888666554
No 228
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=65.68 E-value=6.1 Score=29.36 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEV 498 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~ 498 (518)
.+ |+.++|+.+|+|+++|+++++
T Consensus 13 ~g-s~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 13 HG-TQSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp TC-CHHHHHHHHTSCHHHHHHHHH
T ss_pred cC-CHHHHHHHHCcCHHHHHHHHc
Confidence 35 999999999999999999983
No 229
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=65.45 E-value=6.3 Score=34.23 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=24.0
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 474 KGDR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 474 ~e~~-Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
++.+ |..++|+.||||+.+|| +|++.|..
T Consensus 25 G~~LPse~~La~~~gvSr~tVr----~Al~~L~~ 54 (129)
T 2ek5_A 25 DQRVPSTNELAAFHRINPATAR----NGLTLLVE 54 (129)
T ss_dssp TSCBCCHHHHHHHTTCCHHHHH----HHHHHHHT
T ss_pred CCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3455 89999999999999999 57777765
No 230
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=65.36 E-value=6.4 Score=32.74 Aligned_cols=28 Identities=18% Similarity=0.009 Sum_probs=24.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 474 KGDRTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 474 ~e~~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
..+.|+.|+|..+|||.+.|.++...-.
T Consensus 47 ~g~~s~~e~arry~Is~s~i~~W~r~~~ 74 (95)
T 2jrt_A 47 HGLITEREALDRYSLSEEEFALWRSAVA 74 (95)
T ss_dssp TTSSCHHHHHHHTTCCHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3578999999999999999999987653
No 231
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=65.06 E-value=52 Score=26.36 Aligned_cols=34 Identities=9% Similarity=-0.047 Sum_probs=26.4
Q ss_pred HHHHHHHhCC-CCCHHHHHHHhCCCHHHHHHHHHh
Q 010092 374 KLELLFELKR-VPTDEEIIQGVNISPERYREVMKA 407 (518)
Q Consensus 374 ~~eL~~elgR-~PT~eELA~~lgis~e~v~~~l~~ 407 (518)
..-+...+.. .+++++||+.+|+|+..+..+.+.
T Consensus 8 ~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 8 QNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp HHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3334455565 789999999999999999887654
No 232
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=64.95 E-value=4.1 Score=34.07 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..++|+.+|||+.+|+++++-
T Consensus 26 ~gltq~eLA~~lGis~~~is~ie~G 50 (104)
T 3trb_A 26 DKMSANQLAKHLAIPTNRVTAILNG 50 (104)
T ss_dssp TSCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999873
No 233
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=64.31 E-value=5.2 Score=33.20 Aligned_cols=25 Identities=20% Similarity=0.024 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..++|+.+|||+.+|+++++-
T Consensus 21 ~glsq~~lA~~~gis~~~i~~~e~g 45 (114)
T 3op9_A 21 HGLKNHQIAELLNVQTRTVAYYMSG 45 (114)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3689999999999999999999974
No 234
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=64.25 E-value=6.5 Score=32.24 Aligned_cols=25 Identities=8% Similarity=0.215 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
...|..|||+.||||..|||..+.+
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~~ 39 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLER 39 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 4789999999999999999977654
No 235
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=64.21 E-value=5.8 Score=30.66 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=20.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHH
Q 010092 477 RTLGEIAGNLNISREMVRKHEV 498 (518)
Q Consensus 477 ~Tl~EIA~~LgISrerVRqie~ 498 (518)
.|+.++|+.||||+.+|++++.
T Consensus 14 ~sq~~~A~~Lgvsq~aVS~~~~ 35 (65)
T 2cw1_A 14 KNQEYAARALGLSQKLIEEVLK 35 (65)
T ss_dssp SCHHHHHHHSSSCHHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHHH
Confidence 4999999999999999999874
No 236
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=64.12 E-value=13 Score=34.23 Aligned_cols=37 Identities=24% Similarity=0.150 Sum_probs=29.1
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 457 LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++..-.-++.. .++|++|+|+.+|||+.+|.++++-
T Consensus 90 ~s~~~lk~lR~~------~glTQ~elA~~LGvsr~tis~yE~G 126 (170)
T 2auw_A 90 VSHEMFGDWMHR------NNLSLTTAAEALGISRRMVSYYRTA 126 (170)
T ss_dssp CCHHHHHHHHHH------TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCcHHHHHHHHH------cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 555554555544 4789999999999999999999873
No 237
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=64.02 E-value=7.8 Score=35.84 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=32.3
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 010092 455 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEV 498 (518)
Q Consensus 455 ~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~ 498 (518)
..|+|-|+.....++- ..++|..+||+.+|+|+.+|++++.
T Consensus 34 edL~piE~A~a~~~L~---~~G~t~eeiA~~lG~s~s~V~~~Lr 74 (178)
T 1r71_A 34 NELTPREIADFIGREL---AKGKKKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp TCCCHHHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3588888877655542 2478999999999999999998754
No 238
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=63.83 E-value=8.8 Score=33.18 Aligned_cols=45 Identities=13% Similarity=0.100 Sum_probs=36.2
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhC----CCHHHHHHHHHHHH
Q 010092 455 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLN----ISREMVRKHEVKGL 501 (518)
Q Consensus 455 ~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~Lg----ISrerVRqie~rAL 501 (518)
..|++.|..||..-+.. .++.|..||++.++ ++..+|..++.+-.
T Consensus 5 ~~lt~~e~~vL~~L~~~--~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe 53 (138)
T 2g9w_A 5 TRLGDLERAVMDHLWSR--TEPQTVRQVHEALSARRDLAYTTVMAVLQRLA 53 (138)
T ss_dssp GGCCHHHHHHHHHHHTC--SSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhc--CCCCCHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 57999999999876621 25799999999998 89999997776643
No 239
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=63.80 E-value=6.2 Score=32.71 Aligned_cols=46 Identities=15% Similarity=0.307 Sum_probs=31.8
Q ss_pred HHHHHhcCCHHHHH-HHhHHhcCCCCCCCCHHHHHHHh-CCCHHHHHHHHHH
Q 010092 450 LDDVLDSLKPKESL-VIRQRFGLDGKGDRTLGEIAGNL-NISREMVRKHEVK 499 (518)
Q Consensus 450 L~~~L~~L~~rEr~-VL~lryGL~~~e~~Tl~EIA~~L-gISrerVRqie~r 499 (518)
+..+++-|+.+-+. ||..-+ ..+.++.||++.+ |+|..+|.+.+.+
T Consensus 4 ~~~~l~~l~~~~~~~IL~~L~----~~~~~~~eLa~~l~~is~~tls~~L~~ 51 (107)
T 2hzt_A 4 VEATLEVIGGKWKXVILXHLT----HGKKRTSELKRLMPNITQKMLTQQLRE 51 (107)
T ss_dssp HHHHHHHHCSTTHHHHHHHHT----TCCBCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHH----hCCCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 34455666666653 333322 2579999999999 9999999876554
No 240
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=63.75 E-value=6 Score=34.82 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..|+|+.+|||+++|+++++.
T Consensus 80 ~glTq~elA~~lGis~s~is~~E~G 104 (141)
T 3kxa_A 80 KGFTQSELATAAGLPQPYLSRIENS 104 (141)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4789999999999999999999974
No 241
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=63.65 E-value=5.4 Score=33.46 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..++|+.+|||+.+|+++++-
T Consensus 35 ~gltq~elA~~~gis~~~is~~E~G 59 (111)
T 3mlf_A 35 YGLTQKELGDLFKVSSRTIQNMEKD 59 (111)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 4789999999999999999999874
No 242
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=63.64 E-value=33 Score=28.98 Aligned_cols=38 Identities=13% Similarity=0.002 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 010092 370 IQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKA 407 (518)
Q Consensus 370 i~ka~~eL~~elgR~PT~eELA~~lgis~e~v~~~l~~ 407 (518)
+.++...+...+...+++++||+.+|+|...+..+.+.
T Consensus 13 i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~ 50 (129)
T 1bl0_A 13 IHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKK 50 (129)
T ss_dssp HHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 44555556666777899999999999999999887654
No 243
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=62.89 E-value=8.5 Score=35.28 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=29.1
Q ss_pred HHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 459 PKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 459 ~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
++...||.+-. .+....|..|||+.||||+.+|++.+.+
T Consensus 21 ~R~~~Il~~L~--~~~~~~s~~eLa~~l~vS~~Ti~rdi~~ 59 (187)
T 1j5y_A 21 ERLKSIVRILE--RSKEPVSGAQLAEELSVSRQVIVQDIAY 59 (187)
T ss_dssp HHHHHHHHHHH--HCSSCBCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HcCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 46666665533 1124589999999999999999987763
No 244
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=62.78 E-value=5.6 Score=34.52 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=23.3
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 475 GDR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 475 e~~-Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
+.+ |..++|+.||||+.+|| +|+..|..
T Consensus 36 ~~LPser~La~~~gVSr~tVR----eAl~~L~~ 64 (134)
T 4ham_A 36 EKILSIREFASRIGVNPNTVS----KAYQELER 64 (134)
T ss_dssp CEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCccHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 445 88999999999999999 67777764
No 245
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=62.74 E-value=15 Score=28.04 Aligned_cols=55 Identities=7% Similarity=0.045 Sum_probs=40.2
Q ss_pred cCCHHHHHHHhHHhc---CCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchh
Q 010092 456 SLKPKESLVIRQRFG---LDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRV 510 (518)
Q Consensus 456 ~L~~rEr~VL~lryG---L~~~e-~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~ 510 (518)
.+|+.+..+|.-.|- -+.+. ...-.+||..+|+|...|..+......++++....
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 477888888887774 22221 13467999999999999999999999999886544
No 246
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=62.71 E-value=6.4 Score=33.60 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=31.0
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHh--CCCHHHHHHHHHH
Q 010092 457 LKPKESLVIRQRFGLDGKGDRTLGEIAGNL--NISREMVRKHEVK 499 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e~~Tl~EIA~~L--gISrerVRqie~r 499 (518)
+++-.+.||.+--- ....|..+||+.+ |+|+.+|++++.+
T Consensus 11 md~~d~~IL~~L~~---~g~~s~~eLA~~l~~giS~~aVs~rL~~ 52 (111)
T 3b73_A 11 MTIWDDRILEIIHE---EGNGSPKELEDRDEIRISKSSVSRRLKK 52 (111)
T ss_dssp CCHHHHHHHHHHHH---HSCBCHHHHHTSTTCCSCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH---cCCCCHHHHHHHHhcCCCHHHHHHHHHH
Confidence 66777777765320 1389999999999 9999999987655
No 247
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=62.50 E-value=5.5 Score=33.29 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|.+|+|+.+|||+.+|+++++-
T Consensus 33 ~gltq~elA~~~gis~~~is~~E~G 57 (114)
T 3vk0_A 33 KGWSQEELARQCGLDRTYVSAVERK 57 (114)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4789999999999999999999863
No 248
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=62.05 E-value=5.2 Score=32.73 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..++|+.+|||+.+|+++++.
T Consensus 13 ~gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 13 KGYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4789999999999999999999875
No 249
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=62.03 E-value=6.8 Score=35.59 Aligned_cols=45 Identities=24% Similarity=0.277 Sum_probs=30.4
Q ss_pred hcCCHHHHHHHhHH--hcC---CCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 455 DSLKPKESLVIRQR--FGL---DGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 455 ~~L~~rEr~VL~lr--yGL---~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
..+++..+.-..+. -++ ++..++|..|||+.||||+.+++++...
T Consensus 22 r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 22 QKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 34566555554321 222 1223799999999999999999998873
No 250
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=61.72 E-value=5.7 Score=34.38 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHhC-----CCHHHHHHHHH
Q 010092 474 KGDRTLGEIAGNLN-----ISREMVRKHEV 498 (518)
Q Consensus 474 ~e~~Tl~EIA~~Lg-----ISrerVRqie~ 498 (518)
+.++|++|+|+.+| +|+++|+++++
T Consensus 22 ~~~lT~~elA~~~~~~G~~iS~s~is~iE~ 51 (123)
T 3qwg_A 22 RGPHTSAEVIAALKAEGITMSAPYLSQLRS 51 (123)
T ss_dssp TCSCCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHcccCCCcCHHHHHHHHc
Confidence 35799999999998 99999999986
No 251
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=61.56 E-value=5.3 Score=32.64 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=22.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~r 499 (518)
++|..++|+.+|||+.+|+++++.
T Consensus 31 gltq~~lA~~~gis~~~is~~e~g 54 (104)
T 3cec_A 31 DINTANFAEILGVSNQTIQEVING 54 (104)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcC
Confidence 689999999999999999999874
No 252
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=61.21 E-value=5.5 Score=34.50 Aligned_cols=26 Identities=31% Similarity=0.265 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.++|++|+|+.+|+|+.+|+++++--
T Consensus 15 ~gltq~elA~~~gis~~~is~iE~g~ 40 (130)
T 3fym_A 15 LGMTLTELEQRTGIKREMLVHIENNE 40 (130)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCCC
Confidence 58999999999999999999999753
No 253
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=60.82 E-value=1.8 Score=43.95 Aligned_cols=42 Identities=7% Similarity=0.063 Sum_probs=0.0
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 457 LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
+.+++..||..-|- .++.|..|||+.||+|+.+|++.+.+.-
T Consensus 18 ~~~r~~~iL~~l~~---~~~~t~~eLa~~l~vs~~Tv~r~l~~Le 59 (345)
T 2o0m_A 18 VLQERFQILRNIYW---MQPIGRRSLSETMGITERVLRTETDVLK 59 (345)
T ss_dssp ---------------------------------------------
T ss_pred hhHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 56677777766442 4689999999999999999998776653
No 254
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=60.81 E-value=5.3 Score=33.28 Aligned_cols=24 Identities=25% Similarity=0.201 Sum_probs=22.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~r 499 (518)
++|..++|+.+|||+.+|+++++.
T Consensus 41 glsq~~lA~~~gis~~~is~~E~g 64 (117)
T 3f52_A 41 GVTLRELAEASRVSPGYLSELERG 64 (117)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHCC
Confidence 689999999999999999999864
No 255
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=60.78 E-value=6.8 Score=33.12 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..++|+.+|||+++|+++++-
T Consensus 24 ~glsq~~lA~~~gis~~~is~~E~g 48 (126)
T 3ivp_A 24 QGLTREQVGAMIEIDPRYLTNIENK 48 (126)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 4789999999999999999999874
No 256
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=60.69 E-value=25 Score=31.36 Aligned_cols=27 Identities=33% Similarity=0.250 Sum_probs=22.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
+.|.++||..+|+|+++|. |++++|++
T Consensus 167 ~~t~~~iA~~lg~sr~tvs----R~l~~L~~ 193 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVG----RILKMLED 193 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred ccCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 5799999999999999988 55566664
No 257
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=60.41 E-value=5.6 Score=32.95 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 474 KGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 474 ~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
..++|..++|+.+|||+.+|+++++.
T Consensus 22 ~~glsq~~lA~~~gis~~~is~~e~g 47 (113)
T 2eby_A 22 PLDLKINELAELLHVHRNSVSALINN 47 (113)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35799999999999999999999874
No 258
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=60.29 E-value=13 Score=31.94 Aligned_cols=46 Identities=17% Similarity=0.119 Sum_probs=32.1
Q ss_pred cCCHHHHHHHhHHhcC-C-CCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGL-D-GKGDRTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL-~-~~e~~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
.|++.|-.|+..-+-+ + |....|..+||+.+|+|..+|.+.+.+-.
T Consensus 29 gLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le 76 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLL 76 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3677777665543322 1 23447999999999999999997766543
No 259
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=60.11 E-value=6.7 Score=31.43 Aligned_cols=25 Identities=8% Similarity=-0.068 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..++|+.+|||+.+|+++++-
T Consensus 16 ~gltq~~lA~~~gis~~~is~~e~g 40 (99)
T 2l49_A 16 EYLSRQQLADLTGVPYGTLSYYESG 40 (99)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4689999999999999999999873
No 260
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=60.08 E-value=8.8 Score=32.92 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=22.6
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 475 GDR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 475 e~~-Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
+.+ |..++|+.||||+.+|| +|+..|..
T Consensus 35 ~~Lps~~~La~~~~vSr~tvr----~Al~~L~~ 63 (125)
T 3neu_A 35 DKLPSVREMGVKLAVNPNTVS----RAYQELER 63 (125)
T ss_dssp CBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 445 79999999999999999 56666653
No 261
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=59.91 E-value=7.2 Score=31.46 Aligned_cols=25 Identities=8% Similarity=0.005 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHhCCCHHH----HHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREM----VRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrer----VRqie~r 499 (518)
.++|..++|+.+|+|+++ |+++++-
T Consensus 13 ~glsq~~lA~~~gis~~~~~~~is~~E~g 41 (98)
T 3lfp_A 13 AGISQEKLGVLAGIDEASASARMNQYEKG 41 (98)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCcchhhhHHHHHHCC
Confidence 368999999999999999 8888865
No 262
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=59.82 E-value=8.4 Score=28.98 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=19.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 010092 476 DRTLGEIAGNLNISREMVRKHEV 498 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~ 498 (518)
+.+..+.|+.||||+.++...+.
T Consensus 32 ~gn~~~aA~~LGisr~tL~rklk 54 (63)
T 3e7l_A 32 DYDLKRTAEEIGIDLSNLYRKIK 54 (63)
T ss_dssp TTCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHH
Confidence 45788999999999999887654
No 263
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=59.61 E-value=3.2 Score=39.43 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=31.4
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCH--HHHHHHhCCCHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTL--GEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl--~EIA~~LgISrerVRqie~r 499 (518)
.|++.+..+|..-|-|.. .+.|. .+||+.||+|+.+|++.+.+
T Consensus 3 ~lt~~~e~~L~~L~~l~~-~~~~~~~~~La~~l~vs~~tvs~~l~~ 47 (230)
T 1fx7_A 3 ELVDTTEMYLRTIYDLEE-EGVTPLRARIAERLDQSGPTVSQTVSR 47 (230)
T ss_dssp TTSSHHHHHHHHHHHHHH-HTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh-cCCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 577777777766554432 24555 99999999999999976554
No 264
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=59.55 E-value=22 Score=27.03 Aligned_cols=52 Identities=15% Similarity=0.344 Sum_probs=39.4
Q ss_pred CCHHHHHHHhHHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Q 010092 457 LKPKESLVIRQRFGLDGK-GDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPT 508 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~-e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~ 508 (518)
+++.+..+|...|-.+.+ ......+||..+|+|...|..+...-..+.|+..
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 14 ITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 566777777777744333 2356789999999999999999988888887653
No 265
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=59.20 E-value=19 Score=26.54 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=38.7
Q ss_pred cCCHHHHHHHhHHhcC---CCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010092 456 SLKPKESLVIRQRFGL---DGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL---~~~e~-~Tl~EIA~~LgISrerVRqie~rALkKLR~~ 507 (518)
.+++.+..+|.-.|.- +.+.. ..-.+||..+|+|...|..+......+.|..
T Consensus 4 ~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 4 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp SCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4677888888877753 22211 2356899999999999999998888887753
No 266
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=59.15 E-value=8.6 Score=32.08 Aligned_cols=46 Identities=17% Similarity=0.346 Sum_probs=31.9
Q ss_pred HHHHHhcCCHHHH-HHHhHHhcCCCCCCCCHHHHHHHh-CCCHHHHHHHHHH
Q 010092 450 LDDVLDSLKPKES-LVIRQRFGLDGKGDRTLGEIAGNL-NISREMVRKHEVK 499 (518)
Q Consensus 450 L~~~L~~L~~rEr-~VL~lryGL~~~e~~Tl~EIA~~L-gISrerVRqie~r 499 (518)
+..++.-++.+-+ .||..-+ .++.++.|||+.+ |+|+.+|.+++.+
T Consensus 12 ~~~~l~~l~~~~~~~IL~~L~----~~~~~~~eLa~~l~~is~~tvs~~L~~ 59 (112)
T 1z7u_A 12 INLALSTINGKWKLSLMDELF----QGTKRNGELMRALDGITQRVLTDRLRE 59 (112)
T ss_dssp HHHHHHTTCSTTHHHHHHHHH----HSCBCHHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHH----hCCCCHHHHHHHhccCCHHHHHHHHHH
Confidence 4456666665544 3443332 2479999999999 9999999876654
No 267
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=59.14 E-value=96 Score=32.51 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHh
Q 010092 383 RVPTDEEIIQGVNISPERYREVMKA 407 (518)
Q Consensus 383 R~PT~eELA~~lgis~e~v~~~l~~ 407 (518)
..-|.+|||+.+|||.++|+.++..
T Consensus 394 e~~TleEIAe~LgIS~erVRqi~~R 418 (438)
T 1l9z_H 394 REHTLEEVGAYFGVTRERIRQIENK 418 (438)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 6789999999999999999987654
No 268
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=58.94 E-value=6.5 Score=34.47 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHhC-----CCHHHHHHHHH
Q 010092 474 KGDRTLGEIAGNLN-----ISREMVRKHEV 498 (518)
Q Consensus 474 ~e~~Tl~EIA~~Lg-----ISrerVRqie~ 498 (518)
..++|++|+|+.+| ||+++|+++++
T Consensus 24 ~~~~T~~elA~~~~~~G~~is~s~is~~E~ 53 (135)
T 3r1f_A 24 RGPHTSAEVIAALKAEGITMSAPYLSQLRS 53 (135)
T ss_dssp SCCCCHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHcccCCCcCHHHHHHHHC
Confidence 35799999999999 99999999986
No 269
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=58.77 E-value=9.4 Score=31.93 Aligned_cols=44 Identities=16% Similarity=0.128 Sum_probs=35.2
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhC----CCHHHHHHHHHHHH
Q 010092 455 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLN----ISREMVRKHEVKGL 501 (518)
Q Consensus 455 ~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~Lg----ISrerVRqie~rAL 501 (518)
..|++.|..||..-+- .++.|..|||+.++ ++.++|..++.+=.
T Consensus 6 ~~Lt~~q~~vL~~L~~---~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe 53 (126)
T 1sd4_A 6 VEISMAEWDVMNIIWD---KKSVSANEIVVEIQKYKEVSDKTIRTLITRLY 53 (126)
T ss_dssp CCCCHHHHHHHHHHHH---SSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh---cCCCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Confidence 3589999999887663 35799999999997 58999997776643
No 270
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=58.76 E-value=11 Score=38.39 Aligned_cols=34 Identities=6% Similarity=-0.040 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPT 508 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~ 508 (518)
...|.+|||+..|||..|||+....-+..+-...
T Consensus 291 ~~~t~~eIa~v~~Vse~TIr~rykel~~~~~~l~ 324 (345)
T 4bbr_M 291 IPITAAKVGQTLQVTEGTIKSGYKILYEHRDKLV 324 (345)
T ss_dssp ----------------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 5789999999999999999988877666655433
No 271
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=58.18 E-value=20 Score=26.60 Aligned_cols=51 Identities=10% Similarity=0.182 Sum_probs=38.0
Q ss_pred cCCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 456 SLKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~-~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
.+++.+..+|...|..+.+.+ ....+||..+|+|...|..+...-..+.|+
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 9 AFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 367777788887775433322 346789999999999999998877777664
No 272
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=58.04 E-value=4.9 Score=30.68 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=22.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 477 RTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 477 ~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
+|.+|+|+.||||+.||+++....+
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~G~ 27 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQGM 27 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTTTC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 5789999999999999999887653
No 273
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=58.03 E-value=24 Score=26.58 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=41.3
Q ss_pred cCCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch
Q 010092 456 SLKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKHPTR 509 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~-~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~ 509 (518)
.+++.+..+|...|--+.+.. ....+||..+|+|...|..+...-..+.|....
T Consensus 7 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 7 AFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 367788888888885433221 346789999999999999999888888887544
No 274
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=57.79 E-value=17 Score=28.96 Aligned_cols=52 Identities=10% Similarity=0.018 Sum_probs=39.8
Q ss_pred cCCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010092 456 SLKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e-~~Tl~EIA~~LgISrerVRqie~rALkKLR~~ 507 (518)
.+++.+..+|.-.|-.+.+. .....+||..+|+|...|..+......|.|+.
T Consensus 9 kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 9 RKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 35677777777777543332 35678999999999999999999888888753
No 275
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=57.64 E-value=5.8 Score=33.22 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=23.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
++|..|+|+.+|||..++|.++..++
T Consensus 1 ~~~i~e~A~~~gvs~~tLR~ye~~Gl 26 (108)
T 2vz4_A 1 SYSVGQVAGFAGVTVRTLHHYDDIGL 26 (108)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 37899999999999999999998764
No 276
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=57.53 E-value=19 Score=26.24 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=37.2
Q ss_pred cCCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 456 SLKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~-~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
.+++.+..+|...|-.+.+.. ..-.+||..+|+|...|..+...-..|.|+
T Consensus 3 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 3 SFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 467778888888875433322 346789999999999999998776666653
No 277
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=57.46 E-value=27 Score=31.09 Aligned_cols=49 Identities=20% Similarity=0.028 Sum_probs=31.8
Q ss_pred HhcCCHHHHHHHhHH-----hcCCC-----CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 454 LDSLKPKESLVIRQR-----FGLDG-----KGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 454 L~~L~~rEr~VL~lr-----yGL~~-----~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
+...+..+|..-.+. +|-.+ .-++|.++||..+|+|+++|.+ ++++|++
T Consensus 107 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR----~l~~L~~ 165 (195)
T 3b02_A 107 LQTGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSK----VLADLRR 165 (195)
T ss_dssp HTSSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHH----HHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHH----HHHHHHH
Confidence 445778877653332 22110 1248999999999999999884 5555553
No 278
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=57.39 E-value=5.3 Score=36.07 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=21.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~r 499 (518)
=+|+.|+|+.||||+++|+++.+.
T Consensus 31 ~LTv~EVAe~LgVs~srV~~LIr~ 54 (148)
T 2kfs_A 31 TYDLPRVAELLGVPVSKVAQQLRE 54 (148)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHT
T ss_pred eEcHHHHHHHhCCCHHHHHHHHHC
Confidence 479999999999999999998654
No 279
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=57.37 E-value=6.9 Score=34.19 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
++.|..+||+.||+|+.+|++.+.+
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~ 77 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKR 77 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHH
Confidence 4689999999999999999976554
No 280
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=57.12 E-value=7.1 Score=34.86 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=28.9
Q ss_pred CHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 458 KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 458 ~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
+|....||.+-. ..++|..|||+.||+|+.+|++++..
T Consensus 57 ~p~R~~IL~~L~----~~~~t~~eLa~~lgls~stvs~hL~~ 94 (151)
T 3f6v_A 57 EPTRRRLVQLLT----SGEQTVNNLAAHFPASRSAISQHLRV 94 (151)
T ss_dssp SHHHHHHHHHGG----GCCEEHHHHHTTSSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----hCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 455566665543 35799999999999999999977654
No 281
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=56.90 E-value=32 Score=30.65 Aligned_cols=27 Identities=30% Similarity=0.304 Sum_probs=21.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
++|.++||..+|+|+++|.+ ++++|++
T Consensus 146 ~~t~~~lA~~lg~sr~tvsR----~l~~L~~ 172 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVTK----VIGELAR 172 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHH----HHHHHHH
Confidence 48999999999999999984 5555553
No 282
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=56.45 E-value=9.5 Score=28.60 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=17.9
Q ss_pred CHHHHHHHhCCCHHHHHHHHH
Q 010092 478 TLGEIAGNLNISREMVRKHEV 498 (518)
Q Consensus 478 Tl~EIA~~LgISrerVRqie~ 498 (518)
+..+.|+.||||+.++...+.
T Consensus 35 n~~~aA~~LGIsr~tL~rklk 55 (61)
T 1g2h_A 35 STRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp SHHHHHHHTTSCTHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH
Confidence 688999999999999976543
No 283
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=56.45 E-value=9.4 Score=32.55 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 474 KGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 474 ~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
+...|..|||+.+|+|+.+|++++..
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~ 49 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSP 49 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHH
Confidence 46799999999999999999866543
No 284
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=56.28 E-value=13 Score=32.46 Aligned_cols=39 Identities=13% Similarity=0.145 Sum_probs=31.2
Q ss_pred HHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010092 459 PKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMK 503 (518)
Q Consensus 459 ~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkK 503 (518)
.|.+.|... | .+.+..++|..+|+|..+|++|..+..+.
T Consensus 81 ~Rn~~I~~~-f-----~G~n~~eLArkYgLSer~I~~Ii~~~r~~ 119 (129)
T 1rr7_A 81 IRDLRIWND-F-----NGRNVSELTTRYGVTFNTVYKAIRRMRRL 119 (129)
T ss_dssp HHHHHHHHH-C-----CSSCHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-h-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 366666654 5 37899999999999999999999876553
No 285
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=56.23 E-value=33 Score=30.43 Aligned_cols=27 Identities=37% Similarity=0.343 Sum_probs=21.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
..|.++||..+|+|+++|.+ ++++|++
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR----~l~~l~~ 190 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGR----VLKSLEE 190 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHH----HHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHHH----HHHHHHH
Confidence 48999999999999999884 5555653
No 286
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=55.89 E-value=4 Score=33.56 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=23.0
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 475 GDR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 475 e~~-Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
..+ |..+||+.||||+.+|++ |++.|..
T Consensus 33 ~~lps~~eLa~~~~vSr~tvr~----al~~L~~ 61 (102)
T 1v4r_A 33 DTLPSVADIRAQFGVAAKTVSR----ALAVLKS 61 (102)
T ss_dssp SBCCCHHHHHHHSSSCTTHHHH----HTTTTTT
T ss_pred CCCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 455 999999999999999994 6666664
No 287
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=55.87 E-value=7.5 Score=31.65 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=21.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~r 499 (518)
+++..++|+..|||+++++.|++-
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIenG 55 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIVNS 55 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHTC
T ss_pred hcCHHHHHHHcCCCHHHHHHHHcC
Confidence 578999999999999999999864
No 288
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=55.86 E-value=9.8 Score=36.23 Aligned_cols=29 Identities=28% Similarity=0.268 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 474 KGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 474 ~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
++.++..++|+.||||+.+|| +||..|..
T Consensus 47 G~~L~e~~La~~lgVSr~~VR----eAL~~L~~ 75 (237)
T 3c7j_A 47 GTALRQQELATLFGVSRMPVR----EALRQLEA 75 (237)
T ss_dssp TCBCCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred cCeeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 466899999999999999999 67777753
No 289
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=55.58 E-value=8.6 Score=32.34 Aligned_cols=28 Identities=18% Similarity=0.154 Sum_probs=22.8
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 475 GDR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 475 e~~-Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
+.+ |..++|+.||||+.+|| +|+..|..
T Consensus 31 ~~lPs~~~La~~~~vSr~tvr----~al~~L~~ 59 (113)
T 3tqn_A 31 EMIPSIRKISTEYQINPLTVS----KAYQSLLD 59 (113)
T ss_dssp CEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 445 99999999999999998 66666653
No 290
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=55.47 E-value=8.8 Score=30.79 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHH-HHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREM-VRKHEVKGL 501 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrer-VRqie~rAL 501 (518)
.+.|..|||+.+|+|+.+ |.+++.+-.
T Consensus 29 ~~~t~~eLa~~l~is~~t~vs~~l~~Le 56 (95)
T 2pg4_A 29 YEPSLAEIVKASGVSEKTFFMGLKDRLI 56 (95)
T ss_dssp CCCCHHHHHHHHCCCHHHHHTTHHHHHH
T ss_pred CCCCHHHHHHHHCCCchHHHHHHHHHHH
Confidence 379999999999999999 887765543
No 291
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=55.45 E-value=6.5 Score=32.68 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..++|+.+|||+++|+++++-
T Consensus 48 ~glsq~elA~~~gis~~~is~~E~G 72 (107)
T 2jvl_A 48 PTMTQAELGKEIGETAATVASYERG 72 (107)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4789999999999999999999863
No 292
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=55.38 E-value=10 Score=35.60 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=23.9
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 474 KGDR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 474 ~e~~-Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
++.+ |-.++|+.||||+.+|| .||+.|..
T Consensus 28 G~~LPsE~eLa~~~gVSR~tVR----eAL~~L~~ 57 (239)
T 1hw1_A 28 GTILPAERELSELIGVTRTTLR----EVLQRLAR 57 (239)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 4567 89999999999999999 66666653
No 293
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=55.12 E-value=21 Score=32.69 Aligned_cols=40 Identities=18% Similarity=0.094 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 010092 368 GEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKA 407 (518)
Q Consensus 368 ~ki~ka~~eL~~elgR~PT~eELA~~lgis~e~v~~~l~~ 407 (518)
.++-....++..+.|..||..|||+.+|++...+...++.
T Consensus 8 ~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~ 47 (196)
T 3k2z_A 8 RKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIA 47 (196)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHH
Confidence 3444555556677899999999999999998888776653
No 294
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=54.96 E-value=15 Score=36.63 Aligned_cols=40 Identities=15% Similarity=0.056 Sum_probs=31.2
Q ss_pred CHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 458 KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 458 ~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.++...||.+-- .....|.+|||+.||||+.+|++.+..-
T Consensus 4 ~~r~~~Il~~L~---~~~~~s~~eLa~~l~vS~~ti~r~l~~L 43 (321)
T 1bia_A 4 NTVPLKLIALLA---NGEFHSGEQLGETLGMSRAAINKHIQTL 43 (321)
T ss_dssp CHHHHHHHHHHT---TSSCBCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred chHHHHHHHHHH---cCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 466667766542 2457999999999999999999998753
No 295
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=54.85 E-value=42 Score=30.31 Aligned_cols=27 Identities=33% Similarity=0.319 Sum_probs=22.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
+.|.++||..+|+|+++|. |++++|++
T Consensus 187 ~lt~~~lA~~lg~sr~tvs----R~l~~L~~ 213 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAG----RVLKKLQA 213 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 3799999999999999998 55566664
No 296
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=54.82 E-value=21 Score=26.35 Aligned_cols=52 Identities=12% Similarity=0.081 Sum_probs=38.2
Q ss_pred cCCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010092 456 SLKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~-~Tl~EIA~~LgISrerVRqie~rALkKLR~~ 507 (518)
.+++.+..+|...|..+.+.. ....+||..+|+|...|..+...-..+.|+.
T Consensus 5 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 5 TFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred ccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 367777888887775433322 3467899999999999999998888887754
No 297
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=54.64 E-value=24 Score=28.03 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=42.8
Q ss_pred CCHHHHHHHhHHhcC---CCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhhh
Q 010092 457 LKPKESLVIRQRFGL---DGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYL 513 (518)
Q Consensus 457 L~~rEr~VL~lryGL---~~~e~-~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~~~L 513 (518)
+++.+..+|...|.- +.+.. ..-.+||..+|+|...|..+......+.|.......+
T Consensus 9 ft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~~~~ 69 (83)
T 1le8_B 9 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIAPEL 69 (83)
T ss_dssp CCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccCHHH
Confidence 677888888887753 22211 3456899999999999999999999999886554443
No 298
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=54.37 E-value=2.6 Score=38.78 Aligned_cols=34 Identities=9% Similarity=-0.085 Sum_probs=0.0
Q ss_pred HHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 462 SLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 462 r~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
+.|+.++- .++|..+||+.||||+.||.+++...
T Consensus 149 ~~i~~l~~-----~G~s~~~Ia~~l~vs~~Tvyr~l~~~ 182 (193)
T 3uj3_X 149 EQAGRLLA-----QGIPRKQVALIYDVALSTLYKKHPAK 182 (193)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 34555443 57899999999999999999887654
No 299
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=54.15 E-value=13 Score=34.48 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=26.1
Q ss_pred HHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010092 459 PKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 459 ~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqi 496 (518)
+|++.|+.+-- ...-.|.+|+|+.||||..|||.=
T Consensus 12 eR~~~i~~~l~---~~~~~~~~~la~~~~vs~~TiRrD 46 (190)
T 4a0z_A 12 KRREAIRQQID---SNPFITDHELSDLFQVSIQTIRLD 46 (190)
T ss_dssp HHHHHHHHHHH---HCTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHH---HCCCEeHHHHHHHHCCCHHHHHHH
Confidence 45566665533 134589999999999999999964
No 300
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=53.90 E-value=25 Score=28.86 Aligned_cols=31 Identities=16% Similarity=0.021 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHh
Q 010092 475 GDRTLGEIAGNL-NISREMVRKHEVKGLMKLK 505 (518)
Q Consensus 475 e~~Tl~EIA~~L-gISrerVRqie~rALkKLR 505 (518)
.++|+.+||+.| |...+||.....+.-+.+.
T Consensus 45 t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~ 76 (94)
T 1j1v_A 45 TNHSLPEIGDAFGGRDHTTVLHACRKIEQLRE 76 (94)
T ss_dssp SCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 589999999999 8999999988777766654
No 301
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=53.65 E-value=20 Score=29.29 Aligned_cols=27 Identities=15% Similarity=0.041 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 474 KGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 474 ~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.++.|+.+||+.+|+|+.++.++.++.
T Consensus 16 ~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 16 MRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 367999999999999999998887765
No 302
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=53.62 E-value=7.7 Score=36.31 Aligned_cols=25 Identities=8% Similarity=-0.045 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|..++|+.+|+|+++|+++++.
T Consensus 29 ~g~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 29 LGLSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp TTCCSHHHHHHHTSCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5689999999999999999999875
No 303
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=53.54 E-value=25 Score=28.72 Aligned_cols=24 Identities=8% Similarity=0.026 Sum_probs=20.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhc
Q 010092 385 PTDEEIIQGVNISPERYREVMKAS 408 (518)
Q Consensus 385 PT~eELA~~lgis~e~v~~~l~~~ 408 (518)
-+..+||+.+|++...|...++..
T Consensus 34 ~s~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 34 IRPCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 478999999999999998887653
No 304
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=53.49 E-value=19 Score=32.34 Aligned_cols=28 Identities=29% Similarity=0.163 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
-+.|.++||..+|+|+++|. |++++|++
T Consensus 162 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 189 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVS----RVLHALAE 189 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 35899999999999999988 55566654
No 305
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=53.41 E-value=21 Score=29.19 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 474 KGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 474 ~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.++.|+.+||+.+|+|+.++.+...+.
T Consensus 19 ~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 19 SEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 368999999999999999998887766
No 306
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=53.28 E-value=10 Score=34.30 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=22.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
+.|.++||..+|+|+++|. |++++|++
T Consensus 169 ~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 195 (220)
T 3dv8_A 169 KITHETIANHLGSHREVIT----RMLRYFQV 195 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 6899999999999999988 45556654
No 307
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=53.18 E-value=22 Score=28.72 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.+.|+.+||+.+|+|+.++.+...+.
T Consensus 18 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 18 SQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 37999999999999999998887765
No 308
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=53.17 E-value=10 Score=34.68 Aligned_cols=27 Identities=33% Similarity=0.330 Sum_probs=21.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
+.|.++||..+|+|+++|.+ ++++|++
T Consensus 163 ~~t~~~lA~~lG~sr~tvsR----~l~~L~~ 189 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTST----ALNSLIK 189 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHH----HHHHHHH
T ss_pred cCCHHHHHHHhCCcHHHHHH----HHHHHHH
Confidence 48999999999999999884 5555553
No 309
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=53.07 E-value=4.8 Score=38.16 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=31.6
Q ss_pred cCCHHHHHHHhHHhcCCCCCCC--CHHHHHHHhCCCHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDR--TLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~--Tl~EIA~~LgISrerVRqie~rA 500 (518)
.|++.+..+|..-|-+.. ++. +..+||+.||+|+.+|.+++.+-
T Consensus 3 ~lt~~~e~yL~~i~~l~~-~~~~~~~~~la~~l~vs~~tvs~~l~~L 48 (226)
T 2qq9_A 3 DLVATTEMYLRTIYELEE-EGVTPLRARIAERLEQSGPTVSQTVARM 48 (226)
T ss_dssp CHHHHHHHHHHHHHHHHH-HTCCCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh-cCCCccHHHHHHHHCCCHHHHHHHHHHH
Confidence 467777777777665432 234 45999999999999999765543
No 310
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=52.91 E-value=15 Score=32.29 Aligned_cols=48 Identities=17% Similarity=0.030 Sum_probs=36.9
Q ss_pred cCCHHHHHHHhHHhcCC--CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLD--GKGDRTLGEIAGNLNISREMVRKHEVKGLMK 503 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~--~~e~~Tl~EIA~~LgISrerVRqie~rALkK 503 (518)
.|++.|-.||...+.+. |....|.++||+.||+|...|.+++.+-++|
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~K 78 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQK 78 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 58999988877655432 2345799999999999999999887766543
No 311
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=52.87 E-value=10 Score=34.71 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=22.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
+.|.++||..+|+|+++|. |++++|++
T Consensus 175 ~~t~~~iA~~lg~sr~tvs----R~l~~L~~ 201 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVS----RVLKRLEA 201 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 5799999999999999988 55555654
No 312
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=52.59 E-value=38 Score=25.60 Aligned_cols=52 Identities=17% Similarity=0.074 Sum_probs=39.7
Q ss_pred cCCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010092 456 SLKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e-~~Tl~EIA~~LgISrerVRqie~rALkKLR~~ 507 (518)
.+++.+..+|...|-.+.+. .....+||..+|+|...|..+...-..+.|..
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 61 (68)
T 1yz8_P 9 HFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 61 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHH
Confidence 36777888888888554332 24577999999999999999988777776643
No 313
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=52.54 E-value=13 Score=34.85 Aligned_cols=28 Identities=29% Similarity=0.150 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 474 KGDRTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 474 ~e~~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
..+.+..+||+.||+|+.+|++.+.+--
T Consensus 18 ~~~~~~~~lA~~l~vs~~tvs~~l~~Le 45 (214)
T 3hrs_A 18 HNKITNKEIAQLMQVSPPAVTEMMKKLL 45 (214)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCChhHHHHHHHHHH
Confidence 4579999999999999999999887753
No 314
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=52.38 E-value=10 Score=38.22 Aligned_cols=40 Identities=25% Similarity=0.170 Sum_probs=29.4
Q ss_pred HHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 459 PKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 459 ~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
+..+.||.+-. ..+++..|-+|||+.||||+.+|++.++.
T Consensus 3 ~~~~~iL~~L~-~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~ 42 (323)
T 3rkx_A 3 KYSQDVLQLLY-KNKPNYISGQSIAESLNISRTAVKKVIDQ 42 (323)
T ss_dssp CHHHHHHHHHH-HHTTSCBCHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHH-hCCCCccCHHHHHHHHCCCHHHHHHHHHH
Confidence 34556665542 11235799999999999999999999865
No 315
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=52.31 E-value=16 Score=34.89 Aligned_cols=40 Identities=23% Similarity=0.103 Sum_probs=31.7
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEV 498 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~ 498 (518)
.|++-|+.....+.- ..++|.++||+.+|+|+.+|++++.
T Consensus 117 ~L~~~E~a~~~~~l~---~~g~t~~~iA~~lG~s~~~V~~~l~ 156 (230)
T 1vz0_A 117 DLSPVEEARGYQALL---EMGLTQEEVARRVGKARSTVANALR 156 (230)
T ss_dssp TCCHHHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 588888876655442 2478999999999999999988764
No 316
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=52.31 E-value=8.4 Score=30.17 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=21.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~r 499 (518)
-+|++|.|+.|||++++++++...
T Consensus 16 ~LTi~EaAeylgIg~~~l~~L~~~ 39 (70)
T 1y6u_A 16 TLTIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp EEEHHHHHHHTCSCHHHHHHHHHH
T ss_pred eeCHHHHHHHHCcCHHHHHHHHHc
Confidence 479999999999999999998755
No 317
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=52.23 E-value=8.9 Score=29.84 Aligned_cols=22 Identities=32% Similarity=0.302 Sum_probs=20.7
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q 010092 478 TLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 478 Tl~EIA~~LgISrerVRqie~r 499 (518)
|..++|+.+|||+++|+++++.
T Consensus 29 sq~~lA~~~gis~~~is~~E~g 50 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETG 50 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHcC
Confidence 9999999999999999999874
No 318
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=52.15 E-value=9.9 Score=35.37 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=28.2
Q ss_pred HHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 463 LVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 463 ~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
.|+...|. .|+.+|-.++|+.||||+..|| .||+.|..
T Consensus 24 ~I~~g~l~--pG~~L~e~~La~~lgVSRtpVR----EAL~~L~~ 61 (218)
T 3sxy_A 24 MILNHELK--LGEKLNVRELSEKLGISFTPVR----DALLQLAT 61 (218)
T ss_dssp HHHTTSSC--TTCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHhCCCC--CCCEeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 34444442 3466899999999999999999 67777763
No 319
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=51.99 E-value=15 Score=34.47 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=30.9
Q ss_pred HHhcC-CHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 453 VLDSL-KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 453 ~L~~L-~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
++..| ++....||.+-. ..++|..|||+.+|+|.++|++++.+
T Consensus 8 ilkaL~~~~rl~IL~~L~----~~~~s~~eLa~~l~is~stvs~hLk~ 51 (202)
T 2p4w_A 8 LLDVLGNETRRRILFLLT----KRPYFVSELSRELGVGQKAVLEHLRI 51 (202)
T ss_dssp HHHHHHSHHHHHHHHHHH----HSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHH----hCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34444 455556665543 35899999999999999999977654
No 320
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=51.98 E-value=21 Score=27.19 Aligned_cols=53 Identities=9% Similarity=0.122 Sum_probs=39.0
Q ss_pred CCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch
Q 010092 457 LKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKHPTR 509 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e~-~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~ 509 (518)
+++.+..+|...|-.+.+.. ....+||..+|+|...|..+...-..+.|+...
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 14 FTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 56677777777774332221 346789999999999999999888888876543
No 321
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=51.89 E-value=20 Score=26.43 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=35.1
Q ss_pred cCCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMK 503 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~-~Tl~EIA~~LgISrerVRqie~rALkK 503 (518)
.+++.+..+|...|-.+.+.. ....+||..+|+|...|..+......+
T Consensus 11 ~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k 59 (61)
T 1akh_A 11 SISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 59 (61)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 467888888888885433322 356789999999999999988766554
No 322
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=51.74 E-value=11 Score=32.55 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=22.9
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 475 GDR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 475 e~~-Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
..+ |..++|+.||||+.+|| +|+..|..
T Consensus 33 ~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 61 (126)
T 3by6_A 33 DQLPSVRETALQEKINPNTVA----KAYKELEA 61 (126)
T ss_dssp CEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 456 99999999999999999 46666653
No 323
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=51.64 E-value=12 Score=34.04 Aligned_cols=25 Identities=20% Similarity=0.054 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|++|+|+.+|||+++|+++++-
T Consensus 22 ~g~s~~~la~~~gis~~~ls~~e~g 46 (198)
T 2bnm_A 22 VKMDHAALASLLGETPETVAAWENG 46 (198)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4789999999999999999999974
No 324
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=51.58 E-value=34 Score=24.64 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=35.6
Q ss_pred cCCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKL 504 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~-~Tl~EIA~~LgISrerVRqie~rALkKL 504 (518)
.+++.+..+|...|-.+.+.. ....+||..+|+|...|..+...-..|.
T Consensus 8 ~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 57 (58)
T 3rkq_A 8 LFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKS 57 (58)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccC
Confidence 367778888888885333322 3467899999999999999887665553
No 325
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=51.54 E-value=11 Score=34.38 Aligned_cols=28 Identities=29% Similarity=0.140 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
-+.|.++||..+|+|+++|.+ ++++|++
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR----~l~~l~~ 193 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSV----LLNDFKK 193 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHH----HHHHHHH
T ss_pred ccCCHHHHHHHhCCcHHHHHH----HHHHHHH
Confidence 368999999999999999984 4555553
No 326
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=51.13 E-value=1.6e+02 Score=27.57 Aligned_cols=35 Identities=6% Similarity=-0.005 Sum_probs=27.1
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHH
Q 010092 372 RAKLELLFELKRVPTDEEIIQGVNISPERYREVMK 406 (518)
Q Consensus 372 ka~~eL~~elgR~PT~eELA~~lgis~e~v~~~l~ 406 (518)
++...+...+....|++++|+.+|+|+..+..+.+
T Consensus 173 ~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk 207 (276)
T 3gbg_A 173 KISCLVKSDITRNWRWADICGELRTNRMILKKELE 207 (276)
T ss_dssp HHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 33344455666788999999999999999887764
No 327
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=51.08 E-value=11 Score=34.33 Aligned_cols=27 Identities=44% Similarity=0.479 Sum_probs=22.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
+.|.++||..+|+|+++|.+ ++++|++
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR----~l~~l~~ 203 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNK----ALADFAH 203 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHH----HHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHH----HHHHHHH
Confidence 58999999999999999885 4555653
No 328
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=50.90 E-value=28 Score=26.71 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=40.2
Q ss_pred cCCHHHHHHHhHHh---cCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch
Q 010092 456 SLKPKESLVIRQRF---GLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTR 509 (518)
Q Consensus 456 ~L~~rEr~VL~lry---GL~~~e-~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~ 509 (518)
.+++.+..+|...| -.+.+. ...-.+||..+|+|...|..+......+.|....
T Consensus 7 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred cCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccc
Confidence 46778888888777 322222 1346789999999999999999888888876543
No 329
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=50.84 E-value=28 Score=25.32 Aligned_cols=49 Identities=14% Similarity=0.164 Sum_probs=36.0
Q ss_pred CCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Q 010092 457 LKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLK 505 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e~-~Tl~EIA~~LgISrerVRqie~rALkKLR 505 (518)
+++.+..+|...|-.+.+.. ....+||..+|+|...|..+...-..+.|
T Consensus 7 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 56 (58)
T 1ig7_A 7 FTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAK 56 (58)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhc
Confidence 56777778877775433221 34678999999999999999877766655
No 330
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=50.68 E-value=28 Score=25.65 Aligned_cols=50 Identities=16% Similarity=0.120 Sum_probs=36.9
Q ss_pred CCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 457 LKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e~-~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
+++.+..+|...|..+.+.+ ....+||..+|+|...|..+...-..+.|.
T Consensus 8 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 8 FTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 56777778877775433222 346789999999999999998777766653
No 331
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=50.68 E-value=25 Score=33.69 Aligned_cols=24 Identities=8% Similarity=0.112 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEV 498 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~ 498 (518)
.++|..+||+.+|||.++|+++++
T Consensus 43 ~gltQ~evA~~tGISqS~ISq~e~ 66 (221)
T 2h8r_A 43 HNIPQREVVDVTGLNQSHLSQHLN 66 (221)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHh
Confidence 368999999999999999999997
No 332
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=50.64 E-value=12 Score=33.88 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|++++|+.+|||+++|+++++-
T Consensus 23 ~gltq~~lA~~~gis~~~is~~e~g 47 (192)
T 1y9q_A 23 RGLSLDATAQLTGVSKAMLGQIERG 47 (192)
T ss_dssp TTCCHHHHHHHHSSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4789999999999999999999864
No 333
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=50.45 E-value=3.3 Score=36.85 Aligned_cols=26 Identities=31% Similarity=0.206 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 474 KGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 474 ~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
..++|..|||+.+|+|+.+|+++++-
T Consensus 12 ~~gltq~elA~~lgis~~~vs~~e~G 37 (158)
T 2p5t_A 12 THDLTQLEFARIVGISRNSLSRYENG 37 (158)
T ss_dssp --------------------------
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 46799999999999999999999753
No 334
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=50.38 E-value=9.8 Score=30.85 Aligned_cols=38 Identities=11% Similarity=-0.004 Sum_probs=25.4
Q ss_pred HHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 459 PKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 459 ~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.-|+.+|..-+-. .+.+..+.|+.||||+.+++..+.+
T Consensus 50 ~~E~~~i~~aL~~---~~gn~~~aA~~LGIsr~tL~rklkk 87 (91)
T 1ntc_A 50 ELERTLLTTALRH---TQGHKQEAARLLGWGAATLTAKLKE 87 (91)
T ss_dssp HHHHHHHHHHHHH---TTTCTTHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---hCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3456666544321 2346679999999999999866543
No 335
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=50.06 E-value=7.1 Score=32.69 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=22.6
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 477 RTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 477 ~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
+|..|+|+.+|||..++|.++..++
T Consensus 3 ~~i~e~A~~~gvs~~tLR~ye~~Gl 27 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYDNIEL 27 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHHHHTTS
T ss_pred ccHHHHHHHHCcCHHHHHHHHHCCC
Confidence 6899999999999999999988654
No 336
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=49.93 E-value=12 Score=33.22 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=27.1
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHH
Q 010092 457 LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHE 497 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie 497 (518)
+++.+.+++..... ..+.+..+||+.||+|+.+|++.+
T Consensus 140 ~~~~~~~~~~~~~~---~~~~~~~~ia~~l~is~~tv~~~l 177 (184)
T 3rqi_A 140 VDRLEWEHIQRVLA---ENNNNISATARALNMHRRTLQRKL 177 (184)
T ss_dssp ---CHHHHHHHHHH---HTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---hccccHHHHHHHcCCcHHHHHHHH
Confidence 45566666665442 257899999999999999998765
No 337
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=49.92 E-value=10 Score=34.95 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=22.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
++|.++||..+|+|+++|. |++++|++
T Consensus 178 ~~t~~~iA~~lg~sr~tvs----R~l~~L~~ 204 (237)
T 3fx3_A 178 PYDKMLIAGRLGMKPESLS----RAFSRLKA 204 (237)
T ss_dssp CSCTHHHHHHTTCCHHHHH----HHHHHHGG
T ss_pred cCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 5789999999999999988 55566664
No 338
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=49.82 E-value=10 Score=34.55 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=21.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
+.|.++||..+|+|+++|.+ ++++|++
T Consensus 178 ~~t~~~lA~~lg~sr~tvsR----~l~~l~~ 204 (227)
T 3dkw_A 178 PVAKQLVAGHLSIQPETFSR----IMHRLGD 204 (227)
T ss_dssp CSCTHHHHHHTTSCHHHHHH----HHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHH----HHHHHHH
Confidence 57999999999999999985 4555553
No 339
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=49.68 E-value=20 Score=31.46 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++++.||++.+|||+.+|.+++++
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~~ 60 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLRN 60 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 4799999999999999999876654
No 340
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=49.52 E-value=7.7 Score=30.63 Aligned_cols=24 Identities=21% Similarity=0.208 Sum_probs=22.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~r 499 (518)
-+|..|+|+.+|||..++|.++.+
T Consensus 5 ~~~i~e~A~~~gvs~~tlR~ye~~ 28 (81)
T 2jml_A 5 TLRIRTIARMTGIREATLRAWERR 28 (81)
T ss_dssp CEEHHHHHHTTSTTHHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHHh
Confidence 478999999999999999999887
No 341
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=49.15 E-value=13 Score=34.77 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=22.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
+.|.++||..+|+|+++|.+ ++++|++
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR----~l~~L~~ 203 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSR----VLASLKR 203 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHH----HHHHHHH
Confidence 68999999999999999985 5555654
No 342
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=48.69 E-value=40 Score=31.62 Aligned_cols=27 Identities=33% Similarity=0.250 Sum_probs=22.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
++|.++||..+|+|+++|. |+|++|++
T Consensus 217 ~lt~~~lA~~lG~sr~tvs----R~l~~L~~ 243 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVG----RILKMLED 243 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 5799999999999999988 55556664
No 343
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.57 E-value=38 Score=26.45 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=37.3
Q ss_pred cCCHHHHHHHhHHhcCC----CC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 456 SLKPKESLVIRQRFGLD----GK-GDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~----~~-e~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
.+++.+..+|...|--+ .+ ......+||..+|++...|..+......|.|.
T Consensus 14 ~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk 69 (80)
T 2da4_A 14 QFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRL 69 (80)
T ss_dssp CCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhh
Confidence 36778888888888321 00 01245789999999999999999888777764
No 344
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=48.51 E-value=36 Score=26.97 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=40.3
Q ss_pred cCCHHHHHHHhHHh---cCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch
Q 010092 456 SLKPKESLVIRQRF---GLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTR 509 (518)
Q Consensus 456 ~L~~rEr~VL~lry---GL~~~e-~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~ 509 (518)
.+++.+..+|...| -.+.+. .....+||..+|+|...|..+......+.|....
T Consensus 7 ~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccc
Confidence 46778888888777 322221 1345789999999999999999999888876543
No 345
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.08 E-value=31 Score=27.03 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=37.4
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Q 010092 457 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHPT 508 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e-~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~ 508 (518)
+++.+..+|...|-...+. .....+||..+|++...|..+...-..|.|+..
T Consensus 24 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 24 FTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 5566666666666433221 134678999999999999999988888887654
No 346
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=48.02 E-value=14 Score=28.37 Aligned_cols=21 Identities=10% Similarity=0.053 Sum_probs=19.5
Q ss_pred CHHHHHHHhCCCHHHHHHHHH
Q 010092 478 TLGEIAGNLNISREMVRKHEV 498 (518)
Q Consensus 478 Tl~EIA~~LgISrerVRqie~ 498 (518)
|+.+.|+.||||+.+|++.+.
T Consensus 15 s~t~aA~~L~vtQ~AVS~~ir 35 (66)
T 2ovg_A 15 GQTKTAKDLGVYPSSINQAIH 35 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH
Confidence 899999999999999999863
No 347
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=48.00 E-value=40 Score=28.53 Aligned_cols=50 Identities=10% Similarity=-0.130 Sum_probs=41.8
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHhC
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNL-----NISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~L-----gISrerVRqie~rALkKLR~ 506 (518)
.|+++|..+|.+-. ...+...|.++|.+.+ ..+..+|+..+.+-.+||..
T Consensus 43 ~Lt~~E~~LL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~ 97 (121)
T 2hwv_A 43 ELTHREFELLYYLA-KHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIED 97 (121)
T ss_dssp ECCHHHHHHHHHHH-HTTTCCBCHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHHCS
T ss_pred ECCHHHHHHHHHHH-HcCCeEEcHHHHHHHHcCCCCCCCccHHHHHHHHHHHHHhh
Confidence 58999999987654 2335679999999998 68899999999999999975
No 348
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=47.65 E-value=24 Score=28.69 Aligned_cols=26 Identities=8% Similarity=0.081 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
++.|+.+||+.+|+|+.++.++..+.
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 57999999999999999998887765
No 349
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.61 E-value=32 Score=26.14 Aligned_cols=51 Identities=12% Similarity=0.061 Sum_probs=36.9
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010092 457 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e-~~Tl~EIA~~LgISrerVRqie~rALkKLR~~ 507 (518)
+++.+..+|...|-.+.+. .....+||..+|+|...|..+...-..+.|..
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2dmu_A 14 FTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehcccccccccccc
Confidence 5666777777777433222 23467899999999999999998877777653
No 350
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=47.59 E-value=14 Score=34.46 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=22.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
.+|.++||..+|+|+++|. |+|++|++
T Consensus 193 ~lt~~~lA~~lG~sr~tvs----R~l~~L~~ 219 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVT----RLLGDLRE 219 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHHCCcHHHHH----HHHHHHHH
Confidence 5899999999999999998 55556654
No 351
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=47.53 E-value=16 Score=34.37 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=26.7
Q ss_pred HHHhHHhcCCCCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 463 LVIRQRFGLDGKGDR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 463 ~VL~lryGL~~~e~~-Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
.|+...| ..|+.+ +-.++|+.||||+..|| .||+.|..
T Consensus 16 ~I~~g~l--~pG~~LpsE~~La~~lgVSRtpVR----EAL~~L~~ 54 (239)
T 2di3_A 16 ELRSGRL--KIGDHLPSERALSETLGVSRSSLR----EALRVLEA 54 (239)
T ss_dssp HHHHTSS--CTTCBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHhCCC--CCCCcCCCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 3444444 234567 57799999999999999 66666653
No 352
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=47.51 E-value=8.5 Score=34.21 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.+.|.++||..+|+|+++|+++.++
T Consensus 167 ~~~t~~~iA~~lG~sretlsR~l~~ 191 (194)
T 3dn7_A 167 QRVPQYLLASYLGFTPEYLSEIRKK 191 (194)
T ss_dssp -------------------------
T ss_pred HHCCHHHHHHHhCCCHHHHHHHHHh
Confidence 4689999999999999999977654
No 353
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=47.46 E-value=19 Score=29.70 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 474 KGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 474 ~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.++.|+.+||+.+|+|+.++.++..+.
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 21 EEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 367999999999999999998887765
No 354
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=47.44 E-value=28 Score=28.92 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=31.1
Q ss_pred cCCHHHHHHHh-HHhcC--CCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 456 SLKPKESLVIR-QRFGL--DGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 456 ~L~~rEr~VL~-lryGL--~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.|++-+-.|+. +.... -.+..+++.+||+.++++++++++.+.+
T Consensus 13 gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~r 59 (96)
T 2obp_A 13 GIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQ 59 (96)
T ss_dssp CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHH
Confidence 46777777766 33320 0124689999999999999999876654
No 355
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=47.39 E-value=32 Score=26.19 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=36.7
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 457 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e-~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
+++.+..+|...|-.+.+. .....+||..+|+|...|..+...-..+.|.
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr 64 (70)
T 2e1o_A 14 FSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 64 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCC
Confidence 5667777777777433322 1356789999999999999998877777664
No 356
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.84 E-value=28 Score=27.00 Aligned_cols=54 Identities=9% Similarity=0.040 Sum_probs=39.8
Q ss_pred cCCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch
Q 010092 456 SLKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTR 509 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e-~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~ 509 (518)
.+++.+..+|...|-.+.+. .....+||..+|+|...|..+...-..+.|+...
T Consensus 14 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 14 KKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred cCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 35666667777666443332 2457799999999999999999988888887543
No 357
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=46.51 E-value=13 Score=35.21 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=28.2
Q ss_pred HHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 463 LVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 463 ~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
.|+...| ..++.++-.++|+.||||+..|| .||+.|..
T Consensus 40 ~I~~g~l--~pG~~L~e~~La~~lgVSRtpVR----EAL~~L~~ 77 (239)
T 2hs5_A 40 AIIDGTF--RPGARLSEPDICAALDVSRNTVR----EAFQILIE 77 (239)
T ss_dssp HHHHTSS--CTTCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHcCCC--CCcCEeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 4454444 23456899999999999999999 67777753
No 358
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=46.41 E-value=24 Score=35.76 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=33.2
Q ss_pred CCHHHHHHHhH---HhcCCCCCCCCHHHHHHHh--CCCHHHHHHHHH
Q 010092 457 LKPKESLVIRQ---RFGLDGKGDRTLGEIAGNL--NISREMVRKHEV 498 (518)
Q Consensus 457 L~~rEr~VL~l---ryGL~~~e~~Tl~EIA~~L--gISrerVRqie~ 498 (518)
|++|++.||.. .| +..+++-+.+++|+.+ |||..|||+-+.
T Consensus 15 l~eR~~~IL~~i~~~y-l~~~~pV~s~~La~~~~l~VS~aTIRrDL~ 60 (338)
T 1stz_A 15 LNDRQRKVLYCIVREY-IENKKPVSSQRVLEVSNIEFSSATIRNDMK 60 (338)
T ss_dssp CCHHHHHHHHHHHHHH-HHHCSCBCHHHHHHHSCCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHcCCCccHHHHHHHhCCCCCHHHHHHHHH
Confidence 88999999983 11 2225789999999999 999999998775
No 359
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=46.38 E-value=36 Score=26.72 Aligned_cols=52 Identities=23% Similarity=0.211 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHhHHhc-CC--CCCCCCHHHHHHHhCCCHHHHHHHH
Q 010092 443 PALLRLALDDVLDSLKPKESLVIRQRFG-LD--GKGDRTLGEIAGNLNISREMVRKHE 497 (518)
Q Consensus 443 ~~~l~~~L~~~L~~L~~rEr~VL~lryG-L~--~~e~~Tl~EIA~~LgISrerVRqie 497 (518)
...+..+|. ..|+++++.|...--| || |+=..++.+||..+|++.+.|...+
T Consensus 15 ~ehL~~Ql~---~~~~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL 69 (76)
T 2k9l_A 15 LEELQQNIK---LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVR 69 (76)
T ss_dssp HHHHHHHHH---HHCCTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHc---ccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHH
Confidence 334555555 3589999988765433 43 4445799999999999999886543
No 360
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=46.25 E-value=13 Score=31.37 Aligned_cols=28 Identities=21% Similarity=0.057 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVKGLM 502 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~rALk 502 (518)
..+|+.|.|+.+|||.+.|.+++.....
T Consensus 49 g~lS~~EAa~ry~Is~~ei~~W~r~y~~ 76 (101)
T 2oa4_A 49 GLITLAEAKQTYGLSDEEFNSWVSALAE 76 (101)
T ss_dssp TTCCHHHHHHTTCSSHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999987643
No 361
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=46.02 E-value=15 Score=31.81 Aligned_cols=25 Identities=12% Similarity=0.328 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHh-CCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNL-NISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~L-gISrerVRqie~r 499 (518)
.++++.||++.+ |||..++.+++.+
T Consensus 47 g~~~~~eLa~~l~gis~~tls~~L~~ 72 (131)
T 1yyv_A 47 GTHRFSDLRRXMGGVSEXMLAQSLQA 72 (131)
T ss_dssp CCEEHHHHHHHSTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHH
Confidence 579999999999 7999999877654
No 362
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=46.01 E-value=28 Score=26.79 Aligned_cols=54 Identities=4% Similarity=0.002 Sum_probs=39.0
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchh
Q 010092 457 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRV 510 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e-~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~~ 510 (518)
+++.+..+|...|-...+. .....+||..+|++...|..+...-..|.|+....
T Consensus 13 ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 13 KTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcC
Confidence 5566666666666432222 24567899999999999999999888888875443
No 363
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=45.94 E-value=15 Score=29.59 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=18.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 010092 476 DRTLGEIAGNLNISREMVRKHEV 498 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~ 498 (518)
+.+..+.|+.||||+.+++..+.
T Consensus 54 ~GN~s~AA~~LGISR~TLyrKLk 76 (81)
T 1umq_A 54 DRNVSETARRLNMHRRTLQRILA 76 (81)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Confidence 34688999999999999876543
No 364
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.90 E-value=33 Score=26.72 Aligned_cols=51 Identities=10% Similarity=0.247 Sum_probs=36.9
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010092 457 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e-~~Tl~EIA~~LgISrerVRqie~rALkKLR~~ 507 (518)
+++.+..+|...|-...+. .....+||..+|++...|..+...-..+.|+.
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (80)
T 2dmq_A 14 FKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRN 65 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHH
Confidence 5666777777666433222 23467899999999999999998877777653
No 365
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.70 E-value=29 Score=26.45 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=37.9
Q ss_pred CCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010092 457 LKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e~-~Tl~EIA~~LgISrerVRqie~rALkKLR~~ 507 (518)
+++.+..+|...|-.+.+.. ....+||..+|+|...|..+...-..+.|+.
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 14 YSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp SCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 56777778877774332221 3467899999999999999998887777654
No 366
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=45.68 E-value=14 Score=33.97 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=22.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
..|.++||..+|+|+++|. |++++|++
T Consensus 186 ~~t~~~lA~~lG~sr~tvs----R~l~~l~~ 212 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNIS----KTLNELQD 212 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCChhHHH----HHHHHHHH
Confidence 4799999999999999988 55555653
No 367
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=45.58 E-value=37 Score=25.21 Aligned_cols=50 Identities=18% Similarity=0.130 Sum_probs=36.8
Q ss_pred CCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 457 LKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e~-~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
+++.+..+|...|-.+.+.. ....+||..+|+|...|..+...-..+.|+
T Consensus 10 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk 60 (63)
T 2h1k_A 10 YTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKK 60 (63)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhh
Confidence 56777777877775433322 356789999999999999998777766654
No 368
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=45.57 E-value=12 Score=30.74 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHh-CCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNL-NISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~L-gISrerVRqie~r 499 (518)
+++++.||++.+ |+|..+|.+++.+
T Consensus 37 ~~~~~~eL~~~l~gis~~~ls~~L~~ 62 (107)
T 2fsw_A 37 RIIRYGELKRAIPGISEKMLIDELKF 62 (107)
T ss_dssp SCEEHHHHHHHSTTCCHHHHHHHHHH
T ss_pred CCcCHHHHHHHcccCCHHHHHHHHHH
Confidence 479999999999 5999999976654
No 369
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=45.47 E-value=27 Score=33.48 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
++.|..+||+.+|+|+++|+.++.+
T Consensus 177 ~~~t~~~la~~~~l~~~~V~~~l~~ 201 (232)
T 2qlz_A 177 GRATVEELSDRLNLKEREVREKISE 201 (232)
T ss_dssp SEEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 5899999999999999999976543
No 370
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=45.46 E-value=27 Score=26.61 Aligned_cols=52 Identities=8% Similarity=0.012 Sum_probs=37.8
Q ss_pred CCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Q 010092 457 LKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKHPT 508 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e~-~Tl~EIA~~LgISrerVRqie~rALkKLR~~~ 508 (518)
+++.+..+|...|-.+.+.. ....+||..+|+|...|..+...-..+.|+..
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 14 YSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp SCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 56667777777774332221 34678999999999999999988888777643
No 371
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=45.42 E-value=43 Score=26.22 Aligned_cols=53 Identities=9% Similarity=0.120 Sum_probs=38.8
Q ss_pred cCCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Q 010092 456 SLKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKHPT 508 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~-~Tl~EIA~~LgISrerVRqie~rALkKLR~~~ 508 (518)
.+++.+..+|...|-.+.+.. ....+||..+|+|...|..+...-..|.|+..
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (80)
T 2cue_A 13 SFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 66 (80)
T ss_dssp CSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHh
Confidence 367778888888885333221 34678999999999999999877777776543
No 372
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=45.31 E-value=4.5 Score=37.30 Aligned_cols=29 Identities=7% Similarity=-0.044 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVKGLMK 503 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~rALkK 503 (518)
.++|..+||+.||+|+.||.+++...-..
T Consensus 157 ~G~s~~~Ia~~l~vs~~T~yr~l~~~~~~ 185 (193)
T 3plo_X 157 QGIPRKQVALIYDVALSTLYKKHPAKRAH 185 (193)
T ss_dssp -----------------------------
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHhhhHHh
Confidence 57899999999999999999887654433
No 373
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=45.22 E-value=47 Score=25.11 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=38.5
Q ss_pred cCCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010092 456 SLKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~-~Tl~EIA~~LgISrerVRqie~rALkKLR~~ 507 (518)
.+++.+..+|...|-.+.+.. ....+||..+|+|...|..+...-..+.|..
T Consensus 8 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~ 60 (68)
T 1zq3_P 8 TFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQ 60 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHH
Confidence 367788888888885433322 3467899999999999999987777776643
No 374
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=45.19 E-value=15 Score=34.26 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=28.2
Q ss_pred HHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 463 LVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 463 ~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
.|+...|- .|+.++-.++|+.||||+..|| .||+.|..
T Consensus 28 ~I~~g~l~--pG~~L~E~~La~~lgVSRtpVR----EAl~~L~~ 65 (222)
T 3ihu_A 28 GLELGTFV--PGQRLVETDLVAHFGVGRNSVR----EALQRLAA 65 (222)
T ss_dssp HHHHTSSC--TTCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHhCCCC--CCCccCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 34444442 2466889999999999999999 67777763
No 375
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=45.03 E-value=26 Score=33.51 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 474 KGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 474 ~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
..++|+.|||+.+|+++++|.++++.
T Consensus 27 ~~~~~~~eia~~~gl~~stv~r~l~~ 52 (257)
T 2g7u_A 27 RPNPTLAELATEAGLSRPAVRRILLT 52 (257)
T ss_dssp CSSCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 35799999999999999999987764
No 376
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=45.02 E-value=36 Score=26.44 Aligned_cols=49 Identities=8% Similarity=0.072 Sum_probs=36.2
Q ss_pred CHHHHHHHhHHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 458 KPKESLVIRQRFGLDGK-GDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 458 ~~rEr~VL~lryGL~~~-e~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
+..+..+|...|....+ ......+||..+|+|+..|..+...-..|+|+
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kk 61 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhc
Confidence 44556666666644332 23567899999999999999999988888774
No 377
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=44.94 E-value=1.8e+02 Score=26.41 Aligned_cols=29 Identities=17% Similarity=0.098 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVKGLMK 503 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~rALkK 503 (518)
.+.|.++|++..|+|..+|++....-...
T Consensus 158 ~~~~~~~i~~~~~v~~~tI~~~~~~l~~~ 186 (207)
T 1c9b_A 158 EKRTQKEIGDIAGVADVTIRQSYRLIYPR 186 (207)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999876654433
No 378
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=44.76 E-value=30 Score=26.00 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=37.9
Q ss_pred CCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010092 457 LKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e~-~Tl~EIA~~LgISrerVRqie~rALkKLR~~ 507 (518)
+++.+..+|...|-.+.+.+ ....+||..+|+|...|..+...-..+.|..
T Consensus 10 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 10 LNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 56777777777775433322 3467899999999999999998887777653
No 379
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=44.56 E-value=39 Score=25.83 Aligned_cols=53 Identities=9% Similarity=0.007 Sum_probs=39.0
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch
Q 010092 457 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTR 509 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e-~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~ 509 (518)
+++.+..+|...|-.+.+. .....+||..+|+|...|..+...-..+.|...+
T Consensus 16 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 16 FTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp SCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 5566666776666433322 2456789999999999999999999888887544
No 380
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=44.45 E-value=27 Score=29.77 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.0
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 010092 473 GKGDRTLGEIAGNLNISREMVRKHE 497 (518)
Q Consensus 473 ~~e~~Tl~EIA~~LgISrerVRqie 497 (518)
|+.+.|+.+||+..|||+.++..+.
T Consensus 21 G~~~~t~~~Ia~~agvs~~t~Y~~F 45 (170)
T 3egq_A 21 PPHEVSIEEIAREAKVSKSLIFYHF 45 (170)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHC
T ss_pred CCccCcHHHHHHHhCCCchhHHHHc
Confidence 3678999999999999999998763
No 381
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=43.88 E-value=53 Score=24.85 Aligned_cols=51 Identities=20% Similarity=0.197 Sum_probs=38.4
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010092 457 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e-~~Tl~EIA~~LgISrerVRqie~rALkKLR~~ 507 (518)
+++.+..+|...|-.+.+. .....+||..+|+|...|..+...-..+.|..
T Consensus 9 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 60 (68)
T 1ahd_P 9 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 60 (68)
T ss_dssp CCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHh
Confidence 5677777887777544432 34577999999999999999987777776653
No 382
>1hkq_A REPA, replication protein; DNA binding protein, winged-helix, PPS10 plasmid, replication initiator dimer.; 2.75A {Pseudomonas syringae PV} SCOP: a.4.5.10
Probab=43.72 E-value=52 Score=28.30 Aligned_cols=58 Identities=14% Similarity=-0.002 Sum_probs=45.2
Q ss_pred HHHHHhcCCHHHHHHHhHHhcCCCCC---------CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010092 450 LDDVLDSLKPKESLVIRQRFGLDGKG---------DRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 450 L~~~L~~L~~rEr~VL~lryGL~~~e---------~~Tl~EIA~~LgISrerVRqie~rALkKLR~~ 507 (518)
|-.+--.|+..|+.||.+-...-+.. ..+..|+++.+|++..+..+.+..|...|...
T Consensus 12 Li~A~y~Ltl~E~rll~~~is~i~~~~~~~~~~~~~i~~~e~~~~~~~~~~~aY~~lk~a~~~L~~r 78 (132)
T 1hkq_A 12 LIESSHTLTLNEKRLVLCAASLIDSRKPLPKDGYLTIRADTFAEVFGIDVKHAYAALDDAATKLFNR 78 (132)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHTCCTTSCCCGGGEEEEEHHHHHHHTTCCHHHHHHHHHHHHHHHHTC
T ss_pred HhhccCCCCHHHHHHHHHHHHhCCcCCCCCCCCEEEEEHHHHHHHHCCCcchHHHHHHHHHHHHhhC
Confidence 44555679999999988755442111 26789999999999999999999999999753
No 383
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=43.69 E-value=18 Score=34.39 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.++|+.|||+.+|+++++|.++++.-
T Consensus 20 ~~~s~~ela~~~gl~~stv~r~l~~L 45 (241)
T 2xrn_A 20 HGLSLAAIAQLVGLPRSTVQRIINAL 45 (241)
T ss_dssp TCEEHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 47999999999999999999998753
No 384
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=43.35 E-value=28 Score=33.34 Aligned_cols=29 Identities=31% Similarity=0.345 Sum_probs=23.7
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 474 KGDR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 474 ~e~~-Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
+..+ |-.|+|+.||||+.+|| +||..|..
T Consensus 33 g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 62 (248)
T 3f8m_A 33 GDPFPAEREIAEQFEVARETVR----QALRELLI 62 (248)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 4566 99999999999999999 56666653
No 385
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=43.15 E-value=23 Score=27.66 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=34.0
Q ss_pred CHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Q 010092 458 KPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHPT 508 (518)
Q Consensus 458 ~~rEr~VL~lryGL~~~e-~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~ 508 (518)
++.+..+|...|-.+.+. .....+||..+|++...|..+...-..+.|+..
T Consensus 25 t~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 25 TPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 344444444444322111 133578999999999999999988888887653
No 386
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=42.89 E-value=20 Score=34.12 Aligned_cols=25 Identities=36% Similarity=0.381 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
.++|+.|||+.+|+++++|.+++..
T Consensus 22 ~~~~~~ela~~~gl~~stv~r~l~~ 46 (249)
T 1mkm_A 22 GDVSVSEIAEKFNMSVSNAYKYMVV 46 (249)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4799999999999999999987764
No 387
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=42.88 E-value=43 Score=26.34 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=39.3
Q ss_pred cCCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Q 010092 456 SLKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKHPT 508 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~-~Tl~EIA~~LgISrerVRqie~rALkKLR~~~ 508 (518)
.+++.+..+|...|-.+.+.. ....+||..+|+|...|..+...-..|.|+..
T Consensus 26 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 26 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 467777777777775433222 34678999999999999999988888877643
No 388
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=42.53 E-value=53 Score=31.55 Aligned_cols=44 Identities=9% Similarity=-0.063 Sum_probs=34.7
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.|++.|-.||..-+.- ++.+.|..|||+.++++.++|..+..+-
T Consensus 155 gLt~~q~~vL~~L~~~-~~~~~t~~eLa~~l~i~~~tvt~~v~rL 198 (250)
T 1p4x_A 155 TLSFVEFTILAIITSQ-NKNIVLLKDLIETIHHKYPQTVRALNNL 198 (250)
T ss_dssp SSCHHHHHHHHHHHTT-TTCCEEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhC-CCCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 4999999998876531 1235899999999999999998776654
No 389
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=42.52 E-value=21 Score=33.91 Aligned_cols=28 Identities=14% Similarity=0.027 Sum_probs=22.2
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 475 GDR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 475 e~~-Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
..+ |-.|+|+.||||+.+|| +|+..|..
T Consensus 31 ~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 59 (236)
T 3edp_A 31 MLMPNETALQEIYSSSRTTIR----RAVDLLVE 59 (236)
T ss_dssp C--CCHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 456 89999999999999999 66777754
No 390
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=42.46 E-value=17 Score=27.22 Aligned_cols=50 Identities=12% Similarity=0.136 Sum_probs=34.5
Q ss_pred CCHHHHHHHhHHh---cCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 457 LKPKESLVIRQRF---GLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 457 L~~rEr~VL~lry---GL~~~e-~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
+++.+..+|...| ..+.+. .....+||..+|+|...|..+......+.|+
T Consensus 10 ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 10 MNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp STTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 4566667777666 322221 1345789999999999999998877666553
No 391
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=42.44 E-value=26 Score=33.64 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 474 KGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 474 ~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
..++|+.|||+.+|+++++|.++++.
T Consensus 36 ~~~~~~~eia~~~gl~kstv~r~l~t 61 (260)
T 2o0y_A 36 HPTRSLKELVEGTKLPKTTVVRLVAT 61 (260)
T ss_dssp BSSBCHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 35799999999999999999987654
No 392
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=42.13 E-value=19 Score=31.30 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=23.2
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqi 496 (518)
...| +.+.|+.+||+..|||+.++..+
T Consensus 16 ~~~G---~~~~ti~~Ia~~agvs~~t~Y~~ 42 (194)
T 3bqz_B 16 IKNG---YNATTTGEIVKLSESSKGNLYYH 42 (194)
T ss_dssp HHHT---TTTCCHHHHHHHTTCCHHHHHHH
T ss_pred HHcC---CccCCHHHHHHHhCCCchhHHHh
Confidence 3455 57899999999999999999875
No 393
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=42.08 E-value=22 Score=33.80 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=23.5
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 474 KGDR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 474 ~e~~-Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
++.+ |..++|+.||||+.+|| +|+..|..
T Consensus 26 g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 55 (239)
T 3bwg_A 26 GDKLPVLETLMAQFEVSKSTIT----KSLELLEQ 55 (239)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred CCCCcCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 3456 89999999999999999 46666654
No 394
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=42.08 E-value=51 Score=26.19 Aligned_cols=51 Identities=18% Similarity=0.076 Sum_probs=41.3
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHhCc
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNL-----NISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~L-----gISrerVRqie~rALkKLR~~ 507 (518)
.|+++|..+|.+-. ...+...|.++|.+.+ ..+..+|.++..+-.+||...
T Consensus 22 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~~ 77 (96)
T 3rjp_A 22 SLTKREYDLLNILM-TNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDIP 77 (96)
T ss_dssp ECCHHHHHHHHHHH-HTTTSCBCHHHHHHHHSSSCSSCCTHHHHHHHHHHHHHHCCT
T ss_pred EcCHHHHHHHHHHH-hCCCeeEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhccc
Confidence 58999999987654 2334678999999987 378899999999999999764
No 395
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=41.84 E-value=36 Score=31.86 Aligned_cols=24 Identities=8% Similarity=0.149 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEV 498 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~ 498 (518)
.++|..++|+.+|+|.++|+++++
T Consensus 42 ~gitQ~~lA~~~GiSqs~ISr~l~ 65 (194)
T 1ic8_A 42 HNIPQREVVDTTGLNQSHLSQHLN 65 (194)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCChHHHHHHHh
Confidence 478999999999999999999975
No 396
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=41.77 E-value=7.8 Score=37.75 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 010092 474 KGDRTLGEIAGNLNISREMVRKHE 497 (518)
Q Consensus 474 ~e~~Tl~EIA~~LgISrerVRqie 497 (518)
+.+.|+.+||+..|||+.++..+.
T Consensus 138 ~~~~T~~~IA~~AGvs~gtlY~yF 161 (311)
T 4ich_A 138 YHNVRIHDIASELGTSNATIHYHF 161 (311)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred CccCCHHHHHHHhCCCchhHHHhC
Confidence 577999999999999999998753
No 397
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=41.59 E-value=23 Score=30.92 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=23.3
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqi 496 (518)
...| +.+.|+.+||+..|||+.++..+
T Consensus 21 ~~~G---~~~~t~~~IA~~agvs~~tlY~~ 47 (192)
T 2zcm_A 21 SEKG---YDGTTLDDISKSVNIKKASLYYH 47 (192)
T ss_dssp HHHC---TTTCCHHHHHHHTTCCHHHHHHH
T ss_pred HHcC---cccCCHHHHHHHhCCChHHHHHH
Confidence 3566 67899999999999999999865
No 398
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=41.59 E-value=19 Score=31.44 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=23.8
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKHE 497 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqie 497 (518)
...| +.+.|+.+||+..|||+.++..+.
T Consensus 17 ~~~G---~~~~s~~~IA~~agvsk~t~Y~~F 44 (190)
T 3vpr_A 17 TEKG---YEATSVQDLAQALGLSKAALYHHF 44 (190)
T ss_dssp HHHC---STTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHhC---cccCCHHHHHHHhCCCHHHHHHHc
Confidence 4555 678999999999999999998754
No 399
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=41.57 E-value=23 Score=33.80 Aligned_cols=28 Identities=32% Similarity=0.290 Sum_probs=23.0
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 475 GDR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 475 e~~-Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
+.+ |..|+|+.||||+.+||+ |+..|..
T Consensus 32 ~~lPse~~La~~~~vSr~tvr~----Al~~L~~ 60 (243)
T 2wv0_A 32 MPLPSEREYAEQFGISRMTVRQ----ALSNLVN 60 (243)
T ss_dssp CBCCCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 456 899999999999999994 6666654
No 400
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=41.53 E-value=21 Score=30.72 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=20.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 010092 474 KGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 474 ~e~~Tl~EIA~~LgISrerVRqi 496 (518)
+.+.|+.+||+..|||+.++..+
T Consensus 26 ~~~~ti~~Ia~~agvs~~t~Y~~ 48 (188)
T 3qkx_A 26 LNQLSMLKLAKEANVAAGTIYLY 48 (188)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHH
T ss_pred cccCCHHHHHHHhCCCcchHHHH
Confidence 67899999999999999999864
No 401
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=41.47 E-value=45 Score=25.23 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=37.8
Q ss_pred CCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010092 457 LKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e~-~Tl~EIA~~LgISrerVRqie~rALkKLR~~ 507 (518)
+++.+..+|...|..+.+.+ ....+||..+|+|...|..+...-..+.|..
T Consensus 9 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 60 (68)
T 1ftt_A 9 FSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 60 (68)
T ss_dssp CCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhh
Confidence 56777778877775443322 3467899999999999999987777776654
No 402
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=41.31 E-value=34 Score=27.32 Aligned_cols=71 Identities=10% Similarity=0.011 Sum_probs=37.5
Q ss_pred CCHHHHHHHhCCCHHH----HHHHHHhcCCccccCCCcCCchhhhhcccccCCCCcchhhhHHHHHHHHHHHHHhcCCHH
Q 010092 385 PTDEEIIQGVNISPER----YREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENENQRQPALLRLALDDVLDSLKPK 460 (518)
Q Consensus 385 PT~eELA~~lgis~e~----v~~~l~~~~~~~SLD~~~~~~~eel~~~l~d~~~~~~ee~~~~~~l~~~L~~~L~~L~~r 460 (518)
-|..++|+.+|++... |..+..-.. ..+++.-. .+...+ ..+++..+........+...+..|++.
T Consensus 15 lsq~~lA~~~gis~~~~~~~is~~E~g~~-~p~~~~l~-----~la~~l----~v~~~~l~~~~~~~~~~~~~~~~l~~~ 84 (98)
T 3lfp_A 15 ISQEKLGVLAGIDEASASARMNQYEKGKH-APDFEMAN-----RLAKVL----KIPVSYLYTPEDDLAQIILTWNELNEQ 84 (98)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHHHHTSS-CCCHHHHH-----HHHHHH----TSCGGGGGCCCHHHHHHHHHHTTCCHH
T ss_pred CCHHHHHHHhCCCcchhhhHHHHHHCCCC-CCCHHHHH-----HHHHHH----CcCHHHHhCCChhHHHHHHHHHhCCHH
Confidence 4788999999999998 777665432 22222110 000000 001111110001123456678899999
Q ss_pred HHHHH
Q 010092 461 ESLVI 465 (518)
Q Consensus 461 Er~VL 465 (518)
++..|
T Consensus 85 ~~~~~ 89 (98)
T 3lfp_A 85 ERKRI 89 (98)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99988
No 403
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=41.26 E-value=12 Score=32.79 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=35.8
Q ss_pred cCCHHHHHHHhHHh-cCCCCCCCCHHHHHH----Hh--CCCHHHHHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRF-GLDGKGDRTLGEIAG----NL--NISREMVRKHEVKGLMKL 504 (518)
Q Consensus 456 ~L~~rEr~VL~lry-GL~~~e~~Tl~EIA~----~L--gISrerVRqie~rALkKL 504 (518)
.|+..|+.-|+.+| -- ..++|..+||+ .| |||+++|+.++..--.-|
T Consensus 11 ~lT~~qK~~i~~~~~~~--~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~~l 64 (144)
T 1iuf_A 11 AITEHEKRALRHYFFQL--QNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYSYL 64 (144)
T ss_dssp CCCSHHHHHHHHHHHSS--SSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHHHh
Confidence 46777777777766 21 34799999999 99 999999999997754433
No 404
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=41.26 E-value=31 Score=30.97 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 474 KGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 474 ~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
....|.++||+.+|+|+..|++++.+
T Consensus 42 ~~~~s~~eIA~~~~i~~~~l~kil~~ 67 (159)
T 3lwf_A 42 DGPISLRSIAQDKNLSEHYLEQLIGP 67 (159)
T ss_dssp SCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 45699999999999999998876543
No 405
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=41.17 E-value=17 Score=31.85 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=26.9
Q ss_pred HHHhHHhcCCCCCCCCHHHHHHHhCC-CHHHHHHHHHH
Q 010092 463 LVIRQRFGLDGKGDRTLGEIAGNLNI-SREMVRKHEVK 499 (518)
Q Consensus 463 ~VL~lryGL~~~e~~Tl~EIA~~LgI-SrerVRqie~r 499 (518)
+-|+.+. ..|+|+.+|+...|| |++||..++.+
T Consensus 19 e~I~~~i----~~G~sl~~i~~~~~~ps~~T~~~W~~~ 52 (140)
T 4dyq_A 19 DDICSLL----SSGESLLKVCKRPGMPDKSTVFRWLAK 52 (140)
T ss_dssp HHHHHHH----HTTCCHHHHHTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHH----HCCCcHHHHHhcCCCCCHHHHHHHHHc
Confidence 3344455 368999999999999 99999999876
No 406
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=41.14 E-value=27 Score=30.64 Aligned_cols=25 Identities=24% Similarity=0.143 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
...|.+|||+.+|+|+..|++++.+
T Consensus 27 ~~~s~~~IA~~~~i~~~~l~kil~~ 51 (143)
T 3t8r_A 27 GCISLKSIAEENNLSDLYLEQLVGP 51 (143)
T ss_dssp CCEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 4689999999999999998876544
No 407
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=41.00 E-value=45 Score=26.51 Aligned_cols=50 Identities=14% Similarity=0.156 Sum_probs=37.3
Q ss_pred cCCHHHHHHHhHHhcC---CCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Q 010092 456 SLKPKESLVIRQRFGL---DGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLK 505 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL---~~~e-~~Tl~EIA~~LgISrerVRqie~rALkKLR 505 (518)
.+++.+..+|...|.- ..+. ...-.+||..+|+|...|..+......|.|
T Consensus 33 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 33 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp CCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 4778888888877753 2221 134568999999999999999988877765
No 408
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=40.98 E-value=28 Score=28.96 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEV 498 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~ 498 (518)
++.|+.+||+.+|+|+.++.+...
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk 45 (120)
T 3mkl_A 22 HEWTLARIASELLMSPSLLKKKLR 45 (120)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 579999999999999998887753
No 409
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=40.97 E-value=24 Score=31.02 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=24.1
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKHE 497 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqie 497 (518)
...| +.+.|+.+||+..|||+.++..+.
T Consensus 26 ~e~G---~~~~t~~~IA~~agvsk~tlY~~F 53 (192)
T 2fq4_A 26 LESG---FKAVTVDKIAERAKVSKATIYKWW 53 (192)
T ss_dssp HHHC---TTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHcC---cccccHHHHHHHcCCCHHHHHHHC
Confidence 4566 688999999999999999998764
No 410
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=40.88 E-value=57 Score=25.97 Aligned_cols=52 Identities=21% Similarity=0.209 Sum_probs=39.4
Q ss_pred cCCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010092 456 SLKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~-~Tl~EIA~~LgISrerVRqie~rALkKLR~~ 507 (518)
.+++.+..+|...|-.+.+.. ....+||..+|+|...|..+...-..|.|+.
T Consensus 34 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 34 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 467888888888885333221 3467899999999999999998887777753
No 411
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=40.64 E-value=21 Score=30.99 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=23.3
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqi 496 (518)
...| +.+.|+.+||+..|||+.++..+
T Consensus 16 ~~~G---y~~~s~~~Ia~~agvskgtlY~~ 42 (179)
T 2eh3_A 16 FEKG---YQGTSVEEIVKRANLSKGAFYFH 42 (179)
T ss_dssp HHHC---STTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHcC---CccCCHHHHHHHhCCCcHHHHHH
Confidence 4555 68899999999999999999865
No 412
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=40.58 E-value=32 Score=26.63 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=37.2
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch
Q 010092 457 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTR 509 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e-~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~~ 509 (518)
+++.+..+|...|-.+.+. ...-.+||..+|+|...|..+...-..|.|....
T Consensus 11 ~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 11 MSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 4556666666666432221 2346789999999999999999888888776543
No 413
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=40.44 E-value=2e+02 Score=25.74 Aligned_cols=36 Identities=42% Similarity=0.622 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHccCCHHHHHHHH
Q 010092 234 FVQVKEQLQKDLGREPTDVELAEATNMSAAQVKKCL 269 (518)
Q Consensus 234 l~~~~~~l~~~l~r~p~~~ela~~~~~s~~~L~~~~ 269 (518)
+......++..+++.|+..++|...|++.+.+..+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 136 (239)
T 1rp3_A 101 IKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTL 136 (239)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHHH
Confidence 345556677788999999999999999887766544
No 414
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=40.39 E-value=27 Score=30.68 Aligned_cols=26 Identities=19% Similarity=0.073 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 474 KGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 474 ~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
++..|.+|||+.+|+|+..|++++..
T Consensus 28 ~~~~~~~~iA~~~~i~~~~l~kil~~ 53 (149)
T 1ylf_A 28 SSLCTSDYMAESVNTNPVVIRKIMSY 53 (149)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 35799999999999999998866543
No 415
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=40.19 E-value=27 Score=33.37 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=27.0
Q ss_pred hCCCCCHHHHHHHhCCCHHHHHHHHHhcC
Q 010092 381 LKRVPTDEEIIQGVNISPERYREVMKASK 409 (518)
Q Consensus 381 lgR~PT~eELA~~lgis~e~v~~~l~~~~ 409 (518)
.||.|+.++||+.+|++.++++.+|....
T Consensus 33 ~Grpv~~~~LA~~~g~~~~~v~~~L~~l~ 61 (220)
T 3f2g_A 33 KGRPVSRTTLAGILDWPAERVAAVLEQAT 61 (220)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHCT
T ss_pred cCCCCCHHHHHHHhCcCHHHHHHHHHhCC
Confidence 79999999999999999999999998654
No 416
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.07 E-value=47 Score=26.73 Aligned_cols=52 Identities=8% Similarity=-0.007 Sum_probs=38.1
Q ss_pred cCCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010092 456 SLKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e-~~Tl~EIA~~LgISrerVRqie~rALkKLR~~ 507 (518)
..++.+..+|...|-.+.+. .....+||..+|+|...|..+...-..|.|..
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~ 71 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSM 71 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHH
Confidence 35667777777777443322 23567899999999999999998777777654
No 417
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=39.91 E-value=26 Score=33.78 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 474 KGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 474 ~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
..++|+.|||+.+|+++++|.+++..
T Consensus 34 ~~~~~~~eia~~~gl~~stv~r~l~t 59 (265)
T 2ia2_A 34 NQRRTLSDVARATDLTRATARRFLLT 59 (265)
T ss_dssp CSSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 35799999999999999999987764
No 418
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=39.85 E-value=26 Score=36.18 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=38.7
Q ss_pred HHHHHHHHHhc--CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 446 LRLALDDVLDS--LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 446 l~~~L~~~L~~--L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
+...+...+.. |+..|-.||..-+. ...+++|..|||+.++++..+|..++.|
T Consensus 389 ~~~~~~~~~~~~~lt~~q~~vl~~l~~-~~~~~~~~~~l~~~~~~~~~~~t~~~~~ 443 (487)
T 1hsj_A 389 VKKFFRDTKKKFNLNYEEIYILNHILR-SESNEISSKEIAKCSEFKPYYLTKALQK 443 (487)
T ss_dssp HHHHHHHHSSSCCCCHHHHHHHHHHHT-CSCSEEEHHHHHHSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHh-CCCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 34445555543 89999999887663 1115699999999999999999866554
No 419
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=39.81 E-value=35 Score=26.91 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=37.0
Q ss_pred CCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010092 457 LKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e~-~Tl~EIA~~LgISrerVRqie~rALkKLR~~ 507 (518)
+++.+..+|...|-...+.. ....+||..+|++...|..+...-..|.|..
T Consensus 29 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 80 (84)
T 2kt0_A 29 FSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRW 80 (84)
T ss_dssp CCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSC
T ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 56667777777774332221 3467899999999999999998877777654
No 420
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=39.79 E-value=21 Score=31.09 Aligned_cols=47 Identities=15% Similarity=0.158 Sum_probs=32.1
Q ss_pred HHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHh-CCCHHHHHHHHHH
Q 010092 450 LDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNL-NISREMVRKHEVK 499 (518)
Q Consensus 450 L~~~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~L-gISrerVRqie~r 499 (518)
+..+|+-|..+-+..|..... ..++++.||++.+ |||..++.+.+.+
T Consensus 16 i~~~l~~lg~kW~l~IL~~L~---~g~~rf~eL~~~l~gIs~~~Ls~~L~~ 63 (131)
T 4a5n_A 16 VEFTLDVIGGKWKGILFYHMI---DGKKRFNEFRRICPSITQRMLTLQLRE 63 (131)
T ss_dssp HHHHHHHHCSSSHHHHHHHHT---TSCBCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCcCHHHHHHHHh---cCCcCHHHHHHHhcccCHHHHHHHHHH
Confidence 455566666665544433322 3579999999999 9998888866543
No 421
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=39.75 E-value=47 Score=25.97 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=37.4
Q ss_pred CCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010092 457 LKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e~-~Tl~EIA~~LgISrerVRqie~rALkKLR~~ 507 (518)
+++.+..+|...|-.+.+.. ....+||..+|++...|..+...-..+.|+.
T Consensus 25 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~ 76 (81)
T 1fjl_A 25 FSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 76 (81)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhh
Confidence 66777777777774332221 3467899999999999999998888777754
No 422
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=39.73 E-value=40 Score=28.28 Aligned_cols=50 Identities=12% Similarity=-0.081 Sum_probs=41.0
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHhC
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNL-----NISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~L-----gISrerVRqie~rALkKLR~ 506 (518)
.|+++|..+|.+-. ...+...|.++|.+.+ ..+..+|+..+.+-.+||..
T Consensus 41 ~Lt~~E~~LL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~ 95 (115)
T 2k4j_A 41 DLTRAEYEILSLLI-SKKGYVFSRESIAIESESINPESSNKSIDVIIGRLRSKIEK 95 (115)
T ss_dssp CSCHHHHHHHHHHH-HHCCCEECHHHHHHHTCCSSCTTCHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHH-HcCCcEEcHHHHHHHHcCCCCCCchhHHHHHHHHHHHHhhc
Confidence 58999999987654 2234679999999998 67899999999999999964
No 423
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=39.22 E-value=45 Score=28.50 Aligned_cols=28 Identities=11% Similarity=-0.015 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVKGLM 502 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~rALk 502 (518)
+++|+.|||..-|++..+|-.++.....
T Consensus 31 ~G~sleeIA~~R~L~~~TI~~Hl~~~v~ 58 (122)
T 3iuo_A 31 RKVALDDIAVSHGLDFPELLSEVETIVY 58 (122)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 7999999999999999999998888754
No 424
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=38.90 E-value=17 Score=33.54 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=22.0
Q ss_pred CCCHHHHHHHhCCCH-HHHHHHHHHHHHHHhC
Q 010092 476 DRTLGEIAGNLNISR-EMVRKHEVKGLMKLKH 506 (518)
Q Consensus 476 ~~Tl~EIA~~LgISr-erVRqie~rALkKLR~ 506 (518)
++|.++||..+|+|+ ++|. |+|++|++
T Consensus 169 ~~t~~~lA~~lG~sr~etvs----R~l~~l~~ 196 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVS----RIISKLKQ 196 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCChHHHHH----HHHHHHHH
Confidence 689999999999999 7888 55555653
No 425
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=38.84 E-value=40 Score=25.95 Aligned_cols=52 Identities=12% Similarity=0.018 Sum_probs=38.1
Q ss_pred CCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Q 010092 457 LKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKHPT 508 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e~-~Tl~EIA~~LgISrerVRqie~rALkKLR~~~ 508 (518)
+++.+..+|...|-.+.+.. ....+||..+|+|...|..+...-..+.|...
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 14 YTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 46666677776664333221 34578999999999999999988888887654
No 426
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=38.76 E-value=20 Score=32.24 Aligned_cols=22 Identities=9% Similarity=0.196 Sum_probs=20.8
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q 010092 478 TLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 478 Tl~EIA~~LgISrerVRqie~r 499 (518)
|..|+|+.+|+|+++|+++++.
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g 43 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTR 43 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHS
T ss_pred CHHHHHHHhCcCHHHHHHHHhC
Confidence 9999999999999999999874
No 427
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=38.44 E-value=9.2 Score=31.82 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=35.1
Q ss_pred HHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhC----CCHHHHHHHHHHHHH
Q 010092 453 VLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLN----ISREMVRKHEVKGLM 502 (518)
Q Consensus 453 ~L~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~Lg----ISrerVRqie~rALk 502 (518)
....|++.|..||..-.- .++.|..||++.++ ++..+|..++.+-.+
T Consensus 29 ~~~~LT~~e~~VL~~L~~---~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~ 79 (99)
T 2k4b_A 29 VEFNVSNAELIVMRVIWS---LGEARVDEIYAQIPQELEWSLATVKTLLGRLVK 79 (99)
T ss_dssp --CCCCCSCSHHHHHHHH---HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHh---CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHH
Confidence 344699999999877653 24799999999997 578999877766433
No 428
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=38.43 E-value=42 Score=26.25 Aligned_cols=51 Identities=16% Similarity=0.084 Sum_probs=37.1
Q ss_pred CCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010092 457 LKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e~-~Tl~EIA~~LgISrerVRqie~rALkKLR~~ 507 (518)
+++.+..+|...|-.+.+.. ....+||..+|++...|..+...-..|.|+.
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~ 65 (80)
T 2dms_A 14 FTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 65 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHT
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHH
Confidence 56677777777775333222 3467899999999999999988777776653
No 429
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=38.35 E-value=26 Score=34.07 Aligned_cols=28 Identities=11% Similarity=0.046 Sum_probs=23.3
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 475 GDR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 475 e~~-Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
..+ |-.++|+.||||+.+|| +|+..|..
T Consensus 51 ~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 79 (272)
T 3eet_A 51 TRLPSQARIREEYGVSDTVAL----EARKVLMA 79 (272)
T ss_dssp SBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 456 89999999999999999 66666653
No 430
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=38.15 E-value=51 Score=25.55 Aligned_cols=51 Identities=12% Similarity=0.097 Sum_probs=36.5
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010092 457 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e-~~Tl~EIA~~LgISrerVRqie~rALkKLR~~ 507 (518)
+++.+..+|...|-.+.+. .....+||..+|+|...|..+...-..+.|..
T Consensus 16 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~ 67 (77)
T 1nk2_P 16 FTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67 (77)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhh
Confidence 5666667777776433221 13467899999999999999988777777653
No 431
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=38.15 E-value=63 Score=26.88 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
.++|+.+||+.||-..+||..-..+.-+.++.
T Consensus 49 t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~~ 80 (101)
T 3pvv_A 49 TDLSLPKIGQAFGRDHTTVMYAQRKILSEMAE 80 (101)
T ss_dssp CCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999777777666654
No 432
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=38.01 E-value=36 Score=25.15 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=35.9
Q ss_pred cCCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Q 010092 456 SLKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLK 505 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~-~Tl~EIA~~LgISrerVRqie~rALkKLR 505 (518)
.+++.+..+|...|..+.+.+ ..-.+||..+|+|...|..+...-..+.|
T Consensus 9 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 59 (62)
T 2vi6_A 9 VFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCK 59 (62)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCG
T ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchh
Confidence 367777778877775433222 34678999999999999999876665554
No 433
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=37.83 E-value=29 Score=30.35 Aligned_cols=27 Identities=7% Similarity=0.027 Sum_probs=23.3
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqi 496 (518)
...| +.+.|+.+||+..|||+.++..+
T Consensus 26 ~~~G---~~~~t~~~Ia~~agvs~~t~Y~~ 52 (202)
T 3lwj_A 26 IEKG---YYNTSIRDIIALSEVGTGTFYNY 52 (202)
T ss_dssp HHHC---TTTCCHHHHHHHHCSCHHHHHHH
T ss_pred HHcC---cccCCHHHHHHHhCCCchhHHHH
Confidence 4566 57899999999999999999875
No 434
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=37.73 E-value=24 Score=31.49 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=23.8
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKHE 497 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqie 497 (518)
...| +.+.|+.+||+..|||+.+|..+.
T Consensus 25 ~~~G---~~~~s~~~IA~~aGvskgtlY~~F 52 (210)
T 2wui_A 25 LEKG---VGTTAMADLADAAGVSRGAVYGHY 52 (210)
T ss_dssp HHSC---TTTCCHHHHHHHHTSCHHHHHHHC
T ss_pred HHcC---ccccCHHHHHHHhCCCHHHHHHHc
Confidence 3555 688999999999999999998764
No 435
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=37.73 E-value=33 Score=28.55 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=20.6
Q ss_pred CCCC--HHHHHHHh-CCCHHHHHHHHHH
Q 010092 475 GDRT--LGEIAGNL-NISREMVRKHEVK 499 (518)
Q Consensus 475 e~~T--l~EIA~~L-gISrerVRqie~r 499 (518)
.+++ +.||++.+ |+|..++.+++.+
T Consensus 39 g~~~~~~~eL~~~l~gis~~~ls~~L~~ 66 (111)
T 3df8_A 39 GSTRQNFNDIRSSIPGISSTILSRRIKD 66 (111)
T ss_dssp SSSCBCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHccCCCHHHHHHHHHH
Confidence 3566 99999999 9999998876654
No 436
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=37.65 E-value=44 Score=27.55 Aligned_cols=50 Identities=16% Similarity=0.086 Sum_probs=41.0
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHhC
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNL-----NISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~L-----gISrerVRqie~rALkKLR~ 506 (518)
.|+++|..+|.+-. ...+...|.++|.+.+ ..+..+|+.+..+-.+||..
T Consensus 34 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 88 (110)
T 2pmu_A 34 SLSPTEFTLLRYFV-INAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 88 (110)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCBCHHHHHHHHSCTTCCSSSCHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHH-HCCCEEEcHHHHHHHHcCCCCCCccchHHHHHHHHHHHhcc
Confidence 58999999987654 2334679999999998 57888999999999999975
No 437
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=37.57 E-value=87 Score=29.68 Aligned_cols=38 Identities=13% Similarity=0.059 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 010092 370 IQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKA 407 (518)
Q Consensus 370 i~ka~~eL~~elgR~PT~eELA~~lgis~e~v~~~l~~ 407 (518)
+.++..-+...+....|+++||+.+|+|...+..+.+.
T Consensus 5 ~~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~f~~ 42 (292)
T 1d5y_A 5 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKD 42 (292)
T ss_dssp HHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 44555556666778899999999999999999887653
No 438
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=37.47 E-value=28 Score=28.82 Aligned_cols=23 Identities=22% Similarity=0.081 Sum_probs=19.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 010092 476 DRTLGEIAGNLNISREMVRKHEV 498 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~ 498 (518)
+-+..+.|+.||||+.+++..+.
T Consensus 71 ~gn~~~AA~~LGIsR~TL~rkLk 93 (98)
T 1eto_A 71 LGNQTRAALMMGINRGTLRKKLK 93 (98)
T ss_dssp TTCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Confidence 34788999999999999986654
No 439
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=37.31 E-value=69 Score=24.38 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=37.5
Q ss_pred cCCHHHHHHHhHHhcC-CCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 456 SLKPKESLVIRQRFGL-DGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL-~~~e~-~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
.+++.+..+|...|-- ..+.. ....+||..+|+|...|..+...-..+.|+
T Consensus 7 ~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk 59 (72)
T 1uhs_A 7 TMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRR 59 (72)
T ss_dssp CCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhh
Confidence 3677888888888842 32222 346799999999999999998777666664
No 440
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=37.25 E-value=29 Score=29.32 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 474 KGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 474 ~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.++.|+.+||+.+|+|+.++.++..+.
T Consensus 25 ~~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 25 ESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp TSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 357999999999999999998887765
No 441
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=37.10 E-value=53 Score=26.73 Aligned_cols=51 Identities=10% Similarity=0.057 Sum_probs=41.4
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHhCc
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNL-----NISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~L-----gISrerVRqie~rALkKLR~~ 507 (518)
.|+++|..+|.+-. ...+...|.++|.+.+ ..+..+|..+..+-.+||...
T Consensus 31 ~Lt~~E~~lL~~L~-~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~~ 86 (106)
T 1gxq_A 31 EMGPTEFKLLHFFM-THPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG 86 (106)
T ss_dssp CCCHHHHHHHHHHH-HSCSSEECHHHHHHHHTCSSSCCCTHHHHHHHHHHHHHHGGG
T ss_pred EcCHHHHHHHHHHH-HCCCeeEcHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhccc
Confidence 48999999987654 2334678999999988 578899999999999999753
No 442
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=36.85 E-value=34 Score=31.20 Aligned_cols=42 Identities=17% Similarity=0.121 Sum_probs=30.3
Q ss_pred HhcC-CHHHHHHHhHHhcCCCCCCCCHHHHHHHhC-CCHHHHHHHHHH
Q 010092 454 LDSL-KPKESLVIRQRFGLDGKGDRTLGEIAGNLN-ISREMVRKHEVK 499 (518)
Q Consensus 454 L~~L-~~rEr~VL~lryGL~~~e~~Tl~EIA~~Lg-ISrerVRqie~r 499 (518)
++-| .|.-..||.+-. .+++|..||++.|| +|..+|++++..
T Consensus 17 ~~~La~P~Rl~il~~L~----~~~~~~~~l~~~l~~~~~~~~s~Hl~~ 60 (182)
T 4g6q_A 17 VDLLHHPLRWRITQLLI----GRSLTTRELAELLPDVATTTLYRQVGI 60 (182)
T ss_dssp HHHTTSHHHHHHHHHTT----TSCEEHHHHHHHCTTBCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHH----hCCCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 3444 455555665443 35899999999996 999999988653
No 443
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=36.66 E-value=1.7e+02 Score=23.87 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHh
Q 010092 383 RVPTDEEIIQGVNISPERYREVMKA 407 (518)
Q Consensus 383 R~PT~eELA~~lgis~e~v~~~l~~ 407 (518)
..-|.+|||+.+|+|...|+..+..
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~r 62 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAK 62 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5679999999999999999887654
No 444
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=36.54 E-value=27 Score=30.81 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=20.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 010092 474 KGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 474 ~e~~Tl~EIA~~LgISrerVRqi 496 (518)
+.+.|+.+||+..|||+.++..+
T Consensus 30 ~~~~ti~~Ia~~agvs~~t~Y~~ 52 (189)
T 3vp5_A 30 FHEAKIMHIVKALDIPRGSFYQY 52 (189)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHH
T ss_pred cccccHHHHHHHhCCChHHHHHH
Confidence 57899999999999999999764
No 445
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=36.39 E-value=85 Score=27.25 Aligned_cols=54 Identities=22% Similarity=0.202 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHhHHhcC-C--CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 446 LRLALDDVLDSLKPKESLVIRQRFGL-D--GKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 446 l~~~L~~~L~~L~~rEr~VL~lryGL-~--~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
+..+|. ..++++++.|...--|- | |+=..++.|||+.+|++.+.|. ++++.|+.
T Consensus 9 L~~Ql~---~~~~~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve----~vL~~iQ~ 65 (130)
T 2k9m_A 9 LQQNIK---LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELE----KVRQKVLR 65 (130)
T ss_dssp HHHHHH---HHCCSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHHHHH----HHHHHHHT
T ss_pred HHHHHc---ccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHH----HHHHHHhc
Confidence 344444 36899999887654433 2 3345799999999999999886 45555654
No 446
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=36.39 E-value=25 Score=33.87 Aligned_cols=27 Identities=7% Similarity=0.052 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 474 KGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 474 ~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
..++|+.|||+.+|+++++|.+++..-
T Consensus 19 ~~~lsl~eia~~lgl~ksT~~RlL~tL 45 (260)
T 3r4k_A 19 RLEIGLSDLTRLSGMNKATVYRLMSEL 45 (260)
T ss_dssp BSEEEHHHHHHHHCSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 357999999999999999999998653
No 447
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=36.17 E-value=27 Score=30.43 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.3
Q ss_pred HhcCCCCCCCCHHHHHHHhCCCHHHHHHHH
Q 010092 468 RFGLDGKGDRTLGEIAGNLNISREMVRKHE 497 (518)
Q Consensus 468 ryGL~~~e~~Tl~EIA~~LgISrerVRqie 497 (518)
..| +.+.|+.+||+..|||+.++..+.
T Consensus 23 ~~G---~~~~t~~~IA~~Agvs~~tly~~F 49 (194)
T 3dpj_A 23 RQG---FAQTSFVDISAAVGISRGNFYYHF 49 (194)
T ss_dssp HHC---TTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred HcC---cccCCHHHHHHHHCCChHHHHHHc
Confidence 455 678999999999999999998753
No 448
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=36.13 E-value=15 Score=32.62 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=24.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVKGLM 502 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~rALk 502 (518)
.+|..|+|+.+|||..++|-++...|-
T Consensus 16 ~~~I~evA~~~gvs~~tLR~Ye~~Gll 42 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTISQIRYYDKQGLF 42 (148)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHTTCC
T ss_pred ceeHHHHHHHHCcCHHHHHHHHHCCCC
Confidence 478999999999999999999988753
No 449
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=36.04 E-value=31 Score=30.63 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=23.5
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqi 496 (518)
...| +.+.|+.+||+..|||+.++..+
T Consensus 24 ~~~G---~~~~s~~~IA~~aGvs~~t~Y~~ 50 (210)
T 3vib_A 24 YRKG---IARTSLNEIAQAAGVTRDALYWH 50 (210)
T ss_dssp HHHC---TTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHhC---cccCCHHHHHHHHCcCHHHHHHH
Confidence 4566 68899999999999999999875
No 450
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=36.01 E-value=21 Score=33.58 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=24.1
Q ss_pred CCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 472 DGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 472 ~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
...++.|+.++|+.||+|+++|++.+.+-
T Consensus 23 ~~~~~~s~s~aA~~L~isq~avSr~I~~L 51 (230)
T 3cta_A 23 SNRAYLTSSKLADMLGISQQSASRIIIDL 51 (230)
T ss_dssp SSEEECCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 33457899999999999999999877553
No 451
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=35.95 E-value=25 Score=30.59 Aligned_cols=28 Identities=21% Similarity=0.143 Sum_probs=23.8
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKHE 497 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqie 497 (518)
...| +.+.|+.+||+..|||+.++..+.
T Consensus 22 ~~~G---~~~~t~~~Ia~~agvs~~t~Y~~F 49 (206)
T 3dew_A 22 AQKG---FYGVSIRELAQAAGASISMISYHF 49 (206)
T ss_dssp HHHC---GGGCCHHHHHHHHTCCHHHHHHHS
T ss_pred hcCC---cccCcHHHHHHHhCCCHHHHHHHc
Confidence 3566 578999999999999999998764
No 452
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=35.94 E-value=32 Score=30.64 Aligned_cols=28 Identities=29% Similarity=0.283 Sum_probs=23.9
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKHE 497 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqie 497 (518)
...| +.+.|+.+||+..|||+.++..+.
T Consensus 26 ~~~G---~~~ts~~~IA~~aGvsk~tlY~~F 53 (211)
T 3bhq_A 26 ISKG---YDGTSMEEIATKAGASKQTVYKHF 53 (211)
T ss_dssp HHHC---STTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHhC---cccCCHHHHHHHhCCCHHHHHHHc
Confidence 4566 678999999999999999998754
No 453
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=35.78 E-value=33 Score=30.13 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=23.1
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqi 496 (518)
...| +.+.|+.+||+..|||+.++..+
T Consensus 28 ~~~G---~~~~ti~~Ia~~agvs~~t~Y~~ 54 (220)
T 3lhq_A 28 SQQG---VSATSLAEIANAAGVTRGAIYWH 54 (220)
T ss_dssp HHHC---STTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHcC---cccCCHHHHHHHhCCCceeehhh
Confidence 3556 57899999999999999999875
No 454
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=35.73 E-value=30 Score=28.47 Aligned_cols=50 Identities=6% Similarity=-0.013 Sum_probs=41.2
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHhC
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNL-----NISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~L-----gISrerVRqie~rALkKLR~ 506 (518)
.|+++|..+|.+-. ...+...|.++|.+.+ ..+..+|+.++.+-.+||..
T Consensus 31 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 85 (110)
T 1opc_A 31 PLTSGEFAVLKALV-SHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEE 85 (110)
T ss_dssp CCCHHHHHHHHHHH-HSTTCCEEHHHHHHHHCCSSSCTTSSCHHHHHHHHHHHHCS
T ss_pred EcCHHHHHHHHHHH-HcCCceEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhhc
Confidence 58999999987654 2334679999999998 57888999999999999975
No 455
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=35.59 E-value=32 Score=30.37 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=23.2
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqi 496 (518)
...| +.+.|..+||+..|||+.++..+
T Consensus 23 ~~~G---~~~~t~~~Ia~~Agvs~gt~Y~y 49 (204)
T 3anp_C 23 RNRG---FQETTATEIAKAAHVSRGTFFNY 49 (204)
T ss_dssp HHHC---TTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHcC---cccccHHHHHHHcCCchHHHHHH
Confidence 3555 67899999999999999999875
No 456
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=35.58 E-value=40 Score=32.42 Aligned_cols=45 Identities=13% Similarity=0.092 Sum_probs=33.1
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 500 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rA 500 (518)
.|++.|+.+|..-.-..++.+.+..++|+.||+|+.++...+.+-
T Consensus 244 ~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~ 288 (324)
T 1hqc_A 244 GLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPY 288 (324)
T ss_dssp CCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHH
Confidence 477778777764322122457789999999999999999876663
No 457
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=35.55 E-value=28 Score=30.93 Aligned_cols=27 Identities=11% Similarity=0.078 Sum_probs=23.2
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqi 496 (518)
...| +.+.|+.+||+..|||+.++..+
T Consensus 44 ~~~G---~~~~t~~~IA~~aGvs~~t~Y~~ 70 (222)
T 3bru_A 44 TEKG---YSSVGVDEILKAARVPKGSFYHY 70 (222)
T ss_dssp HHSC---TTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHcC---CCcCcHHHHHHHhCCCcchhhhh
Confidence 3455 67899999999999999999875
No 458
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=35.54 E-value=16 Score=32.78 Aligned_cols=26 Identities=31% Similarity=0.286 Sum_probs=23.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
-+|..|+|+.+|||..++|.++...|
T Consensus 11 ~~~i~e~A~~~gvs~~TLR~ye~~Gl 36 (154)
T 2zhg_A 11 LLTPGEVAKRSGVAVSALHFYESKGL 36 (154)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHcCC
Confidence 57999999999999999999988764
No 459
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=35.45 E-value=27 Score=30.77 Aligned_cols=28 Identities=11% Similarity=0.061 Sum_probs=23.6
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKHE 497 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqie 497 (518)
...| +.+.|+.+||+..|||+.++..+.
T Consensus 24 ~~~G---~~~~s~~~IA~~aGvs~gtlY~yF 51 (194)
T 2nx4_A 24 AARG---IEAANMRDIATEAGYTNGALSHYF 51 (194)
T ss_dssp HHHC---TTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred HhcC---cccCCHHHHHHHhCCCcchHHHhC
Confidence 3555 688999999999999999998753
No 460
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=35.38 E-value=53 Score=24.79 Aligned_cols=28 Identities=4% Similarity=0.050 Sum_probs=23.5
Q ss_pred HhCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 010092 380 ELKRVPTDEEIIQGVNISPERYREVMKA 407 (518)
Q Consensus 380 elgR~PT~eELA~~lgis~e~v~~~l~~ 407 (518)
+.+..-+..|||+.+|+|...|...+..
T Consensus 21 ~~~~~~s~~eLA~~lglsr~tv~~~l~~ 48 (67)
T 2heo_A 21 DDGGPVAIFQLVKKCQVPKKTLNQVLYR 48 (67)
T ss_dssp HHCSCEEHHHHHHHHCSCHHHHHHHHHH
T ss_pred HcCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 3456678999999999999999888764
No 461
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=35.28 E-value=33 Score=30.51 Aligned_cols=28 Identities=14% Similarity=0.149 Sum_probs=24.3
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKHE 497 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqie 497 (518)
...| +.+.|+.+||+..|||+.++..+.
T Consensus 25 ~~~G---y~~ts~~~IA~~aGvsk~tlY~~F 52 (202)
T 2i10_A 25 WRQG---YEGTSITDLTKALGINPPSLYAAF 52 (202)
T ss_dssp HHHT---TTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHhC---cccCCHHHHHHHhCCChHHHHHHh
Confidence 4666 688999999999999999998764
No 462
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=35.24 E-value=27 Score=30.73 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=23.4
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqi 496 (518)
...| +.+.|+.+||+..|||+.++..+
T Consensus 32 ~~~G---~~~~s~~~Ia~~agvs~~t~Y~~ 58 (212)
T 1pb6_A 32 SQFG---FHGTRLEQIAELAGVSKTNLLYY 58 (212)
T ss_dssp HHHC---TTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHcC---cchhhHHHHHHHHCCChhHHHHh
Confidence 4556 57899999999999999999876
No 463
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=35.21 E-value=22 Score=31.15 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 010092 474 KGDRTLGEIAGNLNISREMVRKHE 497 (518)
Q Consensus 474 ~e~~Tl~EIA~~LgISrerVRqie 497 (518)
+.+.|+.+||+..|||+.++..+.
T Consensus 25 ~~~~t~~~Ia~~agvs~~t~Y~~F 48 (195)
T 2dg7_A 25 YDNVTVTDIAERAGLTRRSYFRYF 48 (195)
T ss_dssp GGGCCHHHHHHHTTCCHHHHHHHC
T ss_pred ccccCHHHHHHHhCCCHHHHHHHc
Confidence 578999999999999999998764
No 464
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=35.17 E-value=74 Score=24.31 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=36.9
Q ss_pred CCHHHHHHHhHHhc-CCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 457 LKPKESLVIRQRFG-LDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 457 L~~rEr~VL~lryG-L~~~e~-~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
+++.+..+|...|- ...+.. ....+||..+|+|...|..+...-..+.|+
T Consensus 9 ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk 60 (73)
T 2hi3_A 9 PTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRR 60 (73)
T ss_dssp CCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 57777888887774 233322 346789999999999999998777666664
No 465
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=35.17 E-value=51 Score=33.43 Aligned_cols=38 Identities=13% Similarity=-0.023 Sum_probs=29.4
Q ss_pred HHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 010092 462 SLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLM 502 (518)
Q Consensus 462 r~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALk 502 (518)
+.||.+-+- ..+.|..|||+.+|+|+.+|.++..+-+.
T Consensus 19 ~~il~~l~~---~~~~sr~~la~~~~ls~~tv~~~v~~L~~ 56 (406)
T 1z6r_A 19 GAVYRLIDQ---LGPVSRIDLSRLAQLAPASITKIVHEMLE 56 (406)
T ss_dssp HHHHHHHHS---SCSCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---cCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445555441 35799999999999999999998876554
No 466
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=35.16 E-value=33 Score=30.38 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=23.3
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqi 496 (518)
...| +.+.|+.+||+..|||+.++..+
T Consensus 28 ~~~G---~~~~s~~~IA~~agvs~~tlY~~ 54 (204)
T 2ibd_A 28 AERG---LRATTVRDIADAAGILSGSLYHH 54 (204)
T ss_dssp HHHC---STTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHcC---chhcCHHHHHHHhCCCchhHHHh
Confidence 4566 68899999999999999999865
No 467
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=35.05 E-value=22 Score=30.69 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=22.6
Q ss_pred HhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010092 468 RFGLDGKGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 468 ryGL~~~e~~Tl~EIA~~LgISrerVRqi 496 (518)
..| +.+.|+.+||+..|||+.++..+
T Consensus 23 ~~G---~~~~ti~~Ia~~agvs~~t~Y~~ 48 (194)
T 2g7s_A 23 RGG---YNSFSYADISQVVGIRNASIHHH 48 (194)
T ss_dssp HHC---GGGCCHHHHHHHHCCCHHHHHHH
T ss_pred HcC---cccCCHHHHHHHhCCCchHHHHH
Confidence 455 57899999999999999999875
No 468
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=34.99 E-value=28 Score=31.04 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=23.9
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKHE 497 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqie 497 (518)
...| +.+.|+.+||+..|||+.++..+.
T Consensus 22 ~~~G---~~~~s~~~IA~~aGvs~~tiY~~F 49 (202)
T 2d6y_A 22 ARHG---IAGARIDRIAAEARANKQLIYAYY 49 (202)
T ss_dssp HHHT---TTSCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHcC---cccCCHHHHHHHhCCCHHHHHHHc
Confidence 3455 678999999999999999998764
No 469
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=34.85 E-value=68 Score=27.01 Aligned_cols=27 Identities=7% Similarity=0.030 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010092 475 GDRTLGEIAGNLNISREMVRKHEVKGL 501 (518)
Q Consensus 475 e~~Tl~EIA~~LgISrerVRqie~rAL 501 (518)
.+.+..++|+.+|++...++.++..+.
T Consensus 19 ~p~~~~~la~~~~~~~~~~~~~l~~l~ 45 (121)
T 2pjp_A 19 EPWWVRDLAKETGTDEQAMRLTLRQAA 45 (121)
T ss_dssp SCEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 567999999999999999988766553
No 470
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=34.83 E-value=61 Score=26.30 Aligned_cols=52 Identities=10% Similarity=0.056 Sum_probs=39.2
Q ss_pred cCCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010092 456 SLKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e-~~Tl~EIA~~LgISrerVRqie~rALkKLR~~ 507 (518)
.+++.+..+|...|-...+. .....+||..+|+|...|..+...-..|.|+.
T Consensus 31 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 83 (96)
T 3nar_A 31 KKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNG 83 (96)
T ss_dssp SSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhh
Confidence 36777777777776433222 23567899999999999999999998888874
No 471
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=34.57 E-value=28 Score=30.68 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=23.2
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqi 496 (518)
...| +.+.|+.+||+..|||+.++..+
T Consensus 31 ~~~G---~~~~ti~~Ia~~agvs~~t~Y~~ 57 (207)
T 2rae_A 31 TEQG---FDATSVDEVAEASGIARRTLFRY 57 (207)
T ss_dssp HHHC---TTTSCHHHHHHHTTSCHHHHHHH
T ss_pred HHcC---cccCCHHHHHHHhCCCcchHhhh
Confidence 3555 57899999999999999999875
No 472
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.55 E-value=33 Score=28.50 Aligned_cols=43 Identities=14% Similarity=0.028 Sum_probs=33.4
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 010092 455 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEV 498 (518)
Q Consensus 455 ~~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~ 498 (518)
..|++.|+.|+.+..- .|.++.+..+|...+|++..+|.+++.
T Consensus 33 ~~Lt~~E~lVy~~I~~-aGn~GIw~kdL~~~tnL~~~~vtkiLK 75 (95)
T 2yu3_A 33 KGSDNQEKLVYQIIED-AGNKGIWSRDVRYKSNLPLTEINKILK 75 (95)
T ss_dssp CSCSHHHHHHHHHHHH-HTTSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH-hCCCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 5788999988887652 135789999999999999888765543
No 473
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=34.49 E-value=55 Score=24.99 Aligned_cols=53 Identities=13% Similarity=0.089 Sum_probs=37.7
Q ss_pred cCCHHHHHHHhHHhcC---CCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Q 010092 456 SLKPKESLVIRQRFGL---DGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHPT 508 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL---~~~e-~~Tl~EIA~~LgISrerVRqie~rALkKLR~~~ 508 (518)
.+++.+..+|...|.- +.+. ...-.+||..+|+|...|..+......+.+...
T Consensus 13 ~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 13 VLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 3666777777766631 1111 134568999999999999999998888887643
No 474
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=34.44 E-value=27 Score=30.04 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=23.0
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqi 496 (518)
...| +.+.|+.+||+..|||+.++..+
T Consensus 24 ~~~G---~~~~t~~~IA~~agvs~~t~Y~~ 50 (191)
T 3on4_A 24 QKDG---YNAFSFKDIATAINIKTASIHYH 50 (191)
T ss_dssp HHHC---GGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHhC---cccCCHHHHHHHhCCCcchhhhc
Confidence 3566 57899999999999999999865
No 475
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=34.39 E-value=31 Score=30.19 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 010092 474 KGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 474 ~e~~Tl~EIA~~LgISrerVRqi 496 (518)
+.+.|+.+||+..|||+.++..+
T Consensus 22 ~~~~t~~~Ia~~agvs~~t~Y~~ 44 (185)
T 2yve_A 22 LETLSYDSLAEATGLSKSGLIYH 44 (185)
T ss_dssp STTCCHHHHHHHHCCCHHHHHHH
T ss_pred hhhccHHHHHHHhCCChHHHHHh
Confidence 67899999999999999999875
No 476
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=34.33 E-value=22 Score=32.00 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010092 474 KGDRTLGEIAGNLNISREMVRKHEVK 499 (518)
Q Consensus 474 ~e~~Tl~EIA~~LgISrerVRqie~r 499 (518)
++..|.++||+.+|+|+..|++++..
T Consensus 26 ~~~~s~~~IA~~~~is~~~l~kil~~ 51 (162)
T 3k69_A 26 DSKVASRELAQSLHLNPVMIRNILSV 51 (162)
T ss_dssp TSCBCHHHHHHHHTSCGGGTHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 35689999999999999988866543
No 477
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=34.21 E-value=66 Score=24.89 Aligned_cols=51 Identities=20% Similarity=0.160 Sum_probs=34.7
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010092 457 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e-~~Tl~EIA~~LgISrerVRqie~rALkKLR~~ 507 (518)
+++.+..+|...|-...+. .....+||..+|+|...|..+...-..+.|..
T Consensus 20 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 71 (77)
T 1puf_A 20 YTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71 (77)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 4555566666666432221 13467899999999999999987777776643
No 478
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=34.19 E-value=29 Score=30.70 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=23.4
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqi 496 (518)
...| +.+.|+.+||+..|||+.++..+
T Consensus 25 ~~~G---~~~~ti~~Ia~~agvs~~t~Y~~ 51 (216)
T 3f0c_A 25 AHYG---LCKTTMNEIASDVGMGKASLYYY 51 (216)
T ss_dssp HHHC---SSSCCHHHHHHHHTCCHHHHHHH
T ss_pred HHcC---CCcCCHHHHHHHhCCCHHHHHHH
Confidence 4566 67899999999999999999875
No 479
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=34.09 E-value=26 Score=30.64 Aligned_cols=27 Identities=26% Similarity=0.222 Sum_probs=22.9
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqi 496 (518)
...| +.+.|+.+||+..|||+.++..+
T Consensus 25 ~~~G---~~~~s~~~Ia~~agvs~~t~Y~~ 51 (203)
T 3b81_A 25 IANG---YENTTLAFIINKLGISKGALYHY 51 (203)
T ss_dssp HHHC---STTCCHHHHHHHHTCCHHHHHTT
T ss_pred HHcC---cccCcHHHHHHHhCCCchhHHHH
Confidence 4566 57899999999999999998753
No 480
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=33.85 E-value=24 Score=31.09 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 010092 474 KGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 474 ~e~~Tl~EIA~~LgISrerVRqi 496 (518)
+.+.|+.+||+..|||+.++..+
T Consensus 26 ~~~~t~~~IA~~agvs~~tlY~~ 48 (199)
T 2o7t_A 26 HDSLTMENIAEQAGVGVATLYRN 48 (199)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHH
T ss_pred CccCCHHHHHHHhCCCHHHHHHH
Confidence 57899999999999999999875
No 481
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=33.85 E-value=80 Score=25.61 Aligned_cols=51 Identities=18% Similarity=0.183 Sum_probs=38.5
Q ss_pred cCCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 456 SLKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~-~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
.+++.+..+|...|--+.+.. ....+||..+|+|...|..+...-..|.|+
T Consensus 40 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk 91 (97)
T 1b72_A 40 NFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKK 91 (97)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhH
Confidence 478888888888885332221 346789999999999999998777777664
No 482
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=33.64 E-value=37 Score=29.96 Aligned_cols=28 Identities=18% Similarity=0.111 Sum_probs=23.8
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKHE 497 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqie 497 (518)
...| +.+.|+.+||+..|||+.++..+.
T Consensus 21 ~~~G---~~~ts~~~IA~~aGvs~gtlY~~F 48 (197)
T 2gen_A 21 SEHG---VDATTIEMIRDRSGASIGSLYHHF 48 (197)
T ss_dssp HHHC---TTTCCHHHHHHHHCCCHHHHHHHT
T ss_pred HHcC---cccCCHHHHHHHHCCChHHHHHHC
Confidence 4555 678999999999999999998763
No 483
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=33.63 E-value=30 Score=30.60 Aligned_cols=27 Identities=7% Similarity=0.086 Sum_probs=23.4
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqi 496 (518)
...| +.+.|+.+||+..|||+.++..+
T Consensus 24 ~~~G---~~~~s~~~Ia~~Agvskgt~Y~y 50 (197)
T 2f07_A 24 SEKG---LDKASISDIVKKAGTAQGTFYLY 50 (197)
T ss_dssp HHHC---TTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHhC---cccCCHHHHHHHhCCCchHHHHh
Confidence 4566 67899999999999999999875
No 484
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=33.57 E-value=28 Score=29.77 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=20.9
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHH
Q 010092 473 GKGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 473 ~~e~~Tl~EIA~~LgISrerVRqi 496 (518)
|+.+.|..+||+..|||+.++..+
T Consensus 29 G~~~~tv~~Ia~~agvs~~t~Y~~ 52 (177)
T 3kkc_A 29 DYSKITVQDVIGLANVGRSTFYSH 52 (177)
T ss_dssp CTTTCCHHHHHHHHCCCHHHHTTT
T ss_pred ChhHhhHHHHHHHhCCcHhhHHHH
Confidence 367899999999999999998653
No 485
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=33.45 E-value=26 Score=31.02 Aligned_cols=28 Identities=14% Similarity=0.020 Sum_probs=23.9
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKHE 497 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqie 497 (518)
...| +.+.|+.+||+..|||+.++..+.
T Consensus 31 ~~~G---~~~~t~~~IA~~agvs~~t~Y~~F 58 (218)
T 3gzi_A 31 IERP---YAQVSIREIASLAGTDPGLIRYYF 58 (218)
T ss_dssp HTSC---CSCCCHHHHHHHHTSCTHHHHHHH
T ss_pred HHCC---CCcCCHHHHHHHhCCCHHHHHHHc
Confidence 3555 678999999999999999998764
No 486
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=33.43 E-value=20 Score=32.43 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=0.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 476 DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 476 ~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
..|.++||..+|+|+++|. |++++|++
T Consensus 164 ~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 190 (213)
T 1o5l_A 164 PVTLEELSRLFGCARPALS----RVFQELER 190 (213)
T ss_dssp -------------------------------
T ss_pred CCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 5799999999999999988 44555554
No 487
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=33.12 E-value=75 Score=28.80 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhCCC-HHHHHHHHH
Q 010092 370 IQRAKLELLFELKRVPTDEEIIQGVNIS-PERYREVMK 406 (518)
Q Consensus 370 i~ka~~eL~~elgR~PT~eELA~~lgis-~e~v~~~l~ 406 (518)
+.....++..+.|..||..|||+.+|++ ...+...+.
T Consensus 11 i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~ 48 (202)
T 1jhf_A 11 VFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLK 48 (202)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHH
Confidence 3344445556678899999999999999 887776654
No 488
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=32.90 E-value=30 Score=30.20 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=23.6
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKHE 497 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqie 497 (518)
...| +.+.|+.+||+..|||+.++..+.
T Consensus 31 ~~~G---~~~~ti~~Ia~~agvs~~t~Y~~F 58 (208)
T 3cwr_A 31 SSGG---AAAMTMEGVASEAGIAKKTLYRFA 58 (208)
T ss_dssp HHHC---GGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHcC---HHhccHHHHHHHhCCCHHHHHHHc
Confidence 3556 578999999999999999998763
No 489
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=32.63 E-value=36 Score=32.08 Aligned_cols=44 Identities=27% Similarity=0.196 Sum_probs=30.9
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 457 LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
+++...+.|..-|-| .++.+..+||+.||+|..+|+ .++++|++
T Consensus 13 ls~s~EdYLk~I~~L--~~~V~~~~LA~~LgvS~~SV~----~~lkkL~e 56 (200)
T 2p8t_A 13 PEYTVEDVLAVIFLL--KEPLGRKQISERLELGEGSVR----TLLRKLSH 56 (200)
T ss_dssp -CCCHHHHHHHHHHT--TSCBCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCHHHHHHHHHHH--cCCccHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 444455555555555 256899999999999999999 45566664
No 490
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=32.41 E-value=56 Score=29.36 Aligned_cols=41 Identities=15% Similarity=0.058 Sum_probs=28.1
Q ss_pred CHHHHHHHhHHhcCCCCCCCCHHHHHHHhC-CCHHHHHHHHHH
Q 010092 458 KPKESLVIRQRFGLDGKGDRTLGEIAGNLN-ISREMVRKHEVK 499 (518)
Q Consensus 458 ~~rEr~VL~lryGL~~~e~~Tl~EIA~~Lg-ISrerVRqie~r 499 (518)
.+....||..-.+- .....|..||++.++ ||+.+|++++..
T Consensus 28 ~~tR~~IL~~Ll~~-p~~~~ta~eL~~~l~~lS~aTVyrhL~~ 69 (151)
T 3u1d_A 28 HETRLDVLHQILAQ-PDGVLSVEELLYRNPDETEANLRYHVDE 69 (151)
T ss_dssp CHHHHHHHHHHHHS-TTSCBCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred chHHHHHHHHHHcC-CCCCCCHHHHHHhcCCCCHHHHHHHHHH
Confidence 34444555544431 123479999999999 999999987654
No 491
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=32.17 E-value=33 Score=30.20 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=23.5
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqi 496 (518)
...| +.+.|+.+||+..|||+.++..+
T Consensus 24 ~~~G---~~~~ti~~Ia~~agvs~~t~Y~~ 50 (216)
T 3s5r_A 24 AEQG---IAATTMAEIAASVGVNPAMIHYY 50 (216)
T ss_dssp HHHC---TTTCCHHHHHHTTTCCHHHHHHH
T ss_pred HHcC---cccCCHHHHHHHHCCCHHHHHHH
Confidence 4566 67899999999999999999876
No 492
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=32.13 E-value=67 Score=25.78 Aligned_cols=51 Identities=14% Similarity=0.019 Sum_probs=40.1
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHhCc
Q 010092 456 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNL-----NISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 456 ~L~~rEr~VL~lryGL~~~e~~Tl~EIA~~L-----gISrerVRqie~rALkKLR~~ 507 (518)
.|+++|..+|.+-. ...++..|.++|.+.+ ..+..+|+.+..+-.+||...
T Consensus 28 ~Lt~~e~~lL~~L~-~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~~ 83 (102)
T 3zq7_A 28 HLTPIEFRLLAVLL-NNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQD 83 (102)
T ss_dssp CCCHHHHHHHHHHH-HTTTCEEEHHHHHHHHTSSSCSTTHHHHHHHHHHHHHHHCSS
T ss_pred EcCHHHHHHHHHHH-HCCCeeECHHHHHHHhcCCCCCCccchHHHHHHHHHHHhhcC
Confidence 58999999887654 2334568999999887 467789999999999999763
No 493
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=31.98 E-value=29 Score=30.86 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.4
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqi 496 (518)
...| +.+.|+.+||+..|||+.++..+
T Consensus 25 ~~~G---~~~~s~~~IA~~aGvskgtlY~~ 51 (210)
T 2xdn_A 25 YKRG---VARTTLADIAELAGVTRGAIYWH 51 (210)
T ss_dssp HHHC---STTCCHHHHHHHHTCCTTHHHHH
T ss_pred HHcC---cccCcHHHHHHHHCCChHHHHHH
Confidence 4566 68899999999999999999875
No 494
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=31.96 E-value=40 Score=30.35 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=23.2
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqi 496 (518)
...| +.+.|+.+||+..|||+.++..+
T Consensus 23 ~~~G---y~~ts~~~IA~~AGvskgtlY~~ 49 (215)
T 1ui5_A 23 DRRG---YESTTLSEIVAHAGVTKGALYFH 49 (215)
T ss_dssp HHHC---TTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHhC---cccCCHHHHHHHhCCCchhhHhh
Confidence 3556 68899999999999999999864
No 495
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=31.93 E-value=2.1e+02 Score=23.47 Aligned_cols=75 Identities=16% Similarity=0.219 Sum_probs=41.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhcCCccccCCC------cCCchhhhhcccccCCCCcchhhhHHHHHHHHHHHHHhcC
Q 010092 384 VPTDEEIIQGVNISPERYREVMKASKPILSLHSR------HGVTQEEFINGITDVDGVENENQRQPALLRLALDDVLDSL 457 (518)
Q Consensus 384 ~PT~eELA~~lgis~e~v~~~l~~~~~~~SLD~~------~~~~~eel~~~l~d~~~~~~ee~~~~~~l~~~L~~~L~~L 457 (518)
.-|..++|+.+|++...+..+..-... .|++.. .+.+.+.++... ... .. ......+...+..|
T Consensus 25 glsq~~lA~~~gis~~~is~~E~g~~~-p~~~~l~~ia~~l~v~~~~l~~~~---~~~-~~-----~~~~~~l~~~~~~l 94 (126)
T 3ivp_A 25 GLTREQVGAMIEIDPRYLTNIENKGQH-PSLQVLYDLVSLLNVSVDEFFLPA---SSQ-VK-----STKRRQLENKIDNF 94 (126)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHSCCC-CCHHHHHHHHHHHTCCSHHHHSCC---CCC-CC-----CHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHhCcCHHHHHHHHCCCCC-CCHHHHHHHHHHHCcCHHHHhCCC---ccc-cc-----hHHHHHHHHHHHcC
Confidence 347889999999999988887754322 233221 111222222211 110 01 12234566777889
Q ss_pred CHHHHHHHhHH
Q 010092 458 KPKESLVIRQR 468 (518)
Q Consensus 458 ~~rEr~VL~lr 468 (518)
++.++..|.-.
T Consensus 95 ~~~~~~~i~~~ 105 (126)
T 3ivp_A 95 TDADLVIMESV 105 (126)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99998887643
No 496
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=31.61 E-value=1e+02 Score=23.08 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=22.4
Q ss_pred hCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 010092 381 LKRVPTDEEIIQGVNISPERYREVMKA 407 (518)
Q Consensus 381 lgR~PT~eELA~~lgis~e~v~~~l~~ 407 (518)
+...-|..|||+.+|+|...|...+..
T Consensus 28 ~~~g~s~~eIA~~l~is~~tV~~~~~r 54 (79)
T 1x3u_A 28 VVAGLPNKSIAYDLDISPRTVEVHRAN 54 (79)
T ss_dssp HTTTCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 456679999999999999998877654
No 497
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=31.53 E-value=88 Score=24.69 Aligned_cols=51 Identities=8% Similarity=0.074 Sum_probs=36.3
Q ss_pred CCHHHHHHHhHHhcCC---CC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010092 457 LKPKESLVIRQRFGLD---GK-GDRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 507 (518)
Q Consensus 457 L~~rEr~VL~lryGL~---~~-e~~Tl~EIA~~LgISrerVRqie~rALkKLR~~ 507 (518)
++..+..+|.-.|.-. .+ ....-.+||..+|+|...|..+...+..+.+..
T Consensus 14 ~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~ 68 (83)
T 2dmn_A 14 LPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPD 68 (83)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHH
T ss_pred CCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHH
Confidence 5666677776555311 11 123567899999999999999999998887754
No 498
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=31.50 E-value=40 Score=29.44 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=22.2
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010092 467 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 496 (518)
Q Consensus 467 lryGL~~~e~~Tl~EIA~~LgISrerVRqi 496 (518)
...| +. .|+.+||+..|||+.++..+
T Consensus 29 ~~~G---~~-~s~~~IA~~agvs~~tlY~~ 54 (194)
T 2q24_A 29 SEEG---LD-AHLERIAREAGVGSGTLYRN 54 (194)
T ss_dssp HHHC---TT-CCHHHHHHHTTCCHHHHHHH
T ss_pred HhcC---cC-CCHHHHHHHhCCChHHHHHH
Confidence 4566 56 89999999999999999865
No 499
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=31.35 E-value=37 Score=25.28 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhc
Q 010092 383 RVPTDEEIIQGVNISPERYREVMKAS 408 (518)
Q Consensus 383 R~PT~eELA~~lgis~e~v~~~l~~~ 408 (518)
..-|..|||+.+|+|...|...+...
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra 49 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKA 49 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 57899999999999999998877543
No 500
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.29 E-value=54 Score=25.33 Aligned_cols=50 Identities=12% Similarity=0.189 Sum_probs=35.6
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010092 457 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 506 (518)
Q Consensus 457 L~~rEr~VL~lryGL~~~e-~~Tl~EIA~~LgISrerVRqie~rALkKLR~ 506 (518)
.++.+..+|...|-.+.+. .....+||..+|+|...|..+...-..+.|+
T Consensus 14 ~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk 64 (75)
T 2da5_A 14 RAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNA 64 (75)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHH
T ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHH
Confidence 5666777777777543322 1346789999999999999998766666654
Done!