BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010093
(518 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 178 bits (452), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 128/492 (26%), Positives = 219/492 (44%), Gaps = 32/492 (6%)
Query: 37 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKT 96
HV P+ GH+ P+ +AKL RG + + T N + KS G
Sbjct: 10 HVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGF----TD 65
Query: 97 IKFPSVEAGLP--EGCENLDAITNEVNKGLIVKFFGATMKXXXXXXXXXXXHKPDCLVAD 154
F S+ GL EG ++ + + + F + CLV+D
Sbjct: 66 FNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSD 125
Query: 155 TFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALYEPHKKVSSDSEPFV--------M 206
+ AA +F +P +++ +S SL + + E ++ +
Sbjct: 126 CCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKV 185
Query: 207 PHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHY 266
PG + DF++ ++ + D + + +N+F ELE +
Sbjct: 186 DWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINAL 245
Query: 267 RKALGRRAWHIGPV-SLCNRNFEDKALRGKQASI--DELECLKWLNSKQPYSVVYVCFGS 323
+ + IGP+ SL + + L +++ ++ ECL WL SK+P SVVYV FGS
Sbjct: 246 SSTIPS-IYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGS 304
Query: 324 LANFTSAQLMEIATGLEASGRNFIWVVSXXXXXXXXXXXXXWLPEGFEKRMEGKGLIIRG 383
T QL+E A GL ++F+W++ F + +GLI
Sbjct: 305 TTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVI----FSSEFTNEIADRGLI-AS 359
Query: 384 WAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVG 443
W PQ +L+H ++GGF+THCGWNST E++ AGVP++ WP A+Q + + + +IG+
Sbjct: 360 WCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGME 419
Query: 444 VGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDL 503
+ VKRE + K +NE++ GD+ ++M+ +A L K A+ GG SY +L
Sbjct: 420 IDTN---------VKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNL 470
Query: 504 SALIEELRLSRH 515
+ +I+++ L ++
Sbjct: 471 NKVIKDVLLKQN 482
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 142/486 (29%), Positives = 225/486 (46%), Gaps = 50/486 (10%)
Query: 37 HVFFFPFMAHGHMIPIVDMAK-LFATRGVKASVITTPANAPYVSKSVERANELGIEMDVK 95
HV P GH+IP+V+ AK L G+ + + P +R + +
Sbjct: 8 HVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPP---SKAQRTVLDSLPSSIS 64
Query: 96 TIKFPSVEAGLPEGCENLDA---ITNEVNKGLIVKFFGATMKXXXXXXXXXXXHKPDCLV 152
++ P V+ +++ +T + + K F + ++ P LV
Sbjct: 65 SVFLPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRL---------PTALV 115
Query: 153 ADTFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALYEPHKKVSSD----SEPFVMPH 208
D F A D A +F +P +F+ T+ L S L L + + VS + +EP ++P
Sbjct: 116 VDLFGTDAFDVAVEFHVPPYIFYPTTANVL--SFFLHLPKLDETVSCEFRELTEPLMLP- 172
Query: 209 FPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRK 268
G + + D QD D+ + LL + G+ VN+F+ELEP + K
Sbjct: 173 --GCVPVAGKDFLD-PAQDRKDDAYKWLLHNTKRYK-EAEGILVNTFFELEP----NAIK 224
Query: 269 ALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFT 328
AL PV KQ +E ECLKWL+++ SV+YV FGS T
Sbjct: 225 ALQEPGLDKPPVYPVGPLVNIGKQEAKQT--EESECLKWLDNQPLGSVLYVSFGSGGTLT 282
Query: 329 SAQLMEIATGLEASGRNFIWVV--------SXXXXXXXXXXXXXWLPEGFEKRMEGKGLI 380
QL E+A GL S + F+WV+ S +LP GF +R + +G +
Sbjct: 283 CEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFV 342
Query: 381 IRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKI 440
I WAPQ +L H + GGF+THCGWNSTLE+V +G+PL+ WP+ AEQ N +++E ++
Sbjct: 343 IPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRA 402
Query: 441 GVGVGIQKWCRIVGD--FVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGS 498
+ GD V+RE + + V +M G+ + +R++ K L + A R +++ G+
Sbjct: 403 ALRPR-------AGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGT 455
Query: 499 SYSDLS 504
S LS
Sbjct: 456 STKALS 461
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 148/489 (30%), Positives = 230/489 (47%), Gaps = 55/489 (11%)
Query: 38 VFFFPFMAHGHMIPIVDMAKLFATRG----VKASVITTPANAPYVSKSVERANELGIEMD 93
+ F P GH+ ++ AKL + I P P+ ++ L +
Sbjct: 12 LIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPG-MPFADSYIKSV--LASQPQ 68
Query: 94 VKTIKFPSVEAGLPEGCENLDAITNEVNKGLIVKFFGATMKXXXXXXXXXXXHKPDCLVA 153
++ I P VE P E L + + I+ F + + +K LV
Sbjct: 69 IQLIDLPEVE---PPPQELLKS-----PEFYILTFLESLIPHVKATIKTILSNKVVGLVL 120
Query: 154 DTFFPWATDAAAKFGIPRLVF--HGTSFFSLCAS-NCLALYEPHKKVSSDSEPFVMPHFP 210
D F D +FGIP +F F SL S + E D + +P
Sbjct: 121 DFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGIS 180
Query: 211 GEIKLTRNQLPD-FVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRKA 269
++ N LPD +D G + +L + D+ G+ VN+F +LE + D A
Sbjct: 181 NQV--PSNVLPDACFNKDGGYIAYYKLAERFRDTK----GIIVNTFSDLEQSSID----A 230
Query: 270 LGRRAWHIGPVSLCNRNFEDKALRGK-QASIDELE---CLKWLNSKQPYSVVYVCFGSLA 325
L I P+ + L+G+ +D+ + LKWL+ + SVV++CFGS+
Sbjct: 231 LYDHDEKIPPIYAVGPLLD---LKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMG 287
Query: 326 -NFTSAQLMEIATGLEASGRNFIWVVSXXXXXXXXXXXXXWLPEGFEKRME--GKGLIIR 382
+F +Q+ EIA GL+ SG F+W S PEGF + ME GKG+I
Sbjct: 288 VSFGPSQIREIALGLKHSGVRFLWSNSAEKKV---------FPEGFLEWMELEGKGMIC- 337
Query: 383 GWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNE-KMVNEILKIG 441
GWAPQV +L H+A+GGFV+HCGWNS LE++ GVP++TWP+ AEQ N ++V E G
Sbjct: 338 GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKE---WG 394
Query: 442 VGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYS 501
VG+G++ R D V E IEK + ++M D+ + + + + +M++ AV +GGSS
Sbjct: 395 VGLGLRVDYRKGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRNAVVDGGSSLI 452
Query: 502 DLSALIEEL 510
+ LI+++
Sbjct: 453 SVGKLIDDI 461
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 148/489 (30%), Positives = 230/489 (47%), Gaps = 55/489 (11%)
Query: 38 VFFFPFMAHGHMIPIVDMAKLFATRG----VKASVITTPANAPYVSKSVERANELGIEMD 93
+ F P GH+ ++ AKL + I P P+ ++ L +
Sbjct: 12 LIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPG-MPFADSYIKSV--LASQPQ 68
Query: 94 VKTIKFPSVEAGLPEGCENLDAITNEVNKGLIVKFFGATMKXXXXXXXXXXXHKPDCLVA 153
++ I P VE P E L + + I+ F + + +K LV
Sbjct: 69 IQLIDLPEVE---PPPQELLKS-----PEFYILTFLESLIPHVKATIKTILSNKVVGLVL 120
Query: 154 DTFFPWATDAAAKFGIPRLVF--HGTSFFSLCAS-NCLALYEPHKKVSSDSEPFVMPHFP 210
D F D +FGIP +F F SL S + E D + +P
Sbjct: 121 DFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGIS 180
Query: 211 GEIKLTRNQLPDFV-KQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRKA 269
++ N LPD +D G + +L + D+ G+ VN+F +LE + D A
Sbjct: 181 NQV--PSNVLPDACFNKDGGYIAYYKLAERFRDTK----GIIVNTFSDLEQSSID----A 230
Query: 270 LGRRAWHIGPVSLCNRNFEDKALRGK-QASIDELE---CLKWLNSKQPYSVVYVCFGSLA 325
L I P+ + L+G+ +D+ + LKWL+ + SVV++CFGS+
Sbjct: 231 LYDHDEKIPPIYAVGPLLD---LKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMG 287
Query: 326 -NFTSAQLMEIATGLEASGRNFIWVVSXXXXXXXXXXXXXWLPEGFEKRME--GKGLIIR 382
+F +Q+ EIA GL+ SG F+W S PEGF + ME GKG+I
Sbjct: 288 VSFGPSQIREIALGLKHSGVRFLWSNSAEKKV---------FPEGFLEWMELEGKGMIC- 337
Query: 383 GWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNE-KMVNEILKIG 441
GWAPQV +L H+A+GGFV+HCGWNS LE++ GVP++TWP+ AEQ N ++V E G
Sbjct: 338 GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKE---WG 394
Query: 442 VGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYS 501
VG+G++ R D V E IEK + ++M D+ + + + + +M++ AV +GGSS
Sbjct: 395 VGLGLRVDYRKGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRNAVVDGGSSLI 452
Query: 502 DLSALIEEL 510
+ LI+++
Sbjct: 453 SVGKLIDDI 461
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 114/363 (31%), Positives = 182/363 (50%), Gaps = 33/363 (9%)
Query: 150 CLVADTFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALYEPHKKVS----SDSEPFV 205
CLVAD F +A D AA+ G+ L F SL S + + E +K+ E +
Sbjct: 115 CLVADAFIWFAADMAAEMGVAWLPFWTAGPNSL--STHVYIDEIREKIGVSGIQGREDEL 172
Query: 206 MPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADH 265
+ PG K+ L + + ++ FSR+L + ++ V +NSF EL+ + +
Sbjct: 173 LNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTND 232
Query: 266 YRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLA 325
+ L + +IGP +L + + CL+WL ++P SVVY+ FG++
Sbjct: 233 LKSKL-KTYLNIGPFNL---------ITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVT 282
Query: 326 NFTSAQLMEIATGLEASGRNFIWVVSXXXXXXXXXXXXXWLPEGFEKRMEGKGLIIRGWA 385
A+++ ++ LEAS FIW + LPEGF ++ G G+++ WA
Sbjct: 283 TPPPAEVVALSEALEASRVPFIWSLRDKARVH--------LPEGFLEKTRGYGMVVP-WA 333
Query: 386 PQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVG 445
PQ +L HEAVG FVTHCGWNS E+VA GVPL+ P +Q N +MV ++L+IGV
Sbjct: 334 PQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGV--- 390
Query: 446 IQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSA 505
RI G + + ++I+ ++ +++R +AL + A RAV GSS +
Sbjct: 391 -----RIEGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFIT 445
Query: 506 LIE 508
L++
Sbjct: 446 LVD 448
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 135/482 (28%), Positives = 211/482 (43%), Gaps = 44/482 (9%)
Query: 30 GSEIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELG 89
G+ + + V FPF H P++ + K AT K + R+NE
Sbjct: 10 GNNLLHVAVLAFPFGTHA--APLLSLVKKIATEAPKVTFSFFCTTTTN-DTLFSRSNEF- 65
Query: 90 IEMDVKTIKFPSVEAGLPEGCENLDAITNEVNKGLIVKFFGATMKXXXXXXXXXXXHKPD 149
+ IK+ +V GLP+G + + L +K K
Sbjct: 66 ----LPNIKYYNVHDGLPKGYVSSGNPREPI--FLFIKAMQENFKHVIDEAVAETGKNIT 119
Query: 150 CLVADTFFPWATDAAAKFG---IPRLVFHGTSFFSLCASNCLALYEPHKKVSSDSEPFVM 206
CLV D FF + D A + +P S + ++ + K+V V+
Sbjct: 120 CLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDVL 179
Query: 207 PHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHY 266
P FP +L + LP+ V +D+ D F+ +L + R+ VA+NSF + P +
Sbjct: 180 PGFP---ELKASDLPEGVIKDI-DVPFATMLHKMGLELPRANAVAINSFATIHPLIENEL 235
Query: 267 RKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLAN 326
+ ++GP +L ++ DE CL+WL+ + SVVY+ FGS+
Sbjct: 236 NSKF-KLLLNVGPFNLTTP---------QRKVSDEHGCLEWLDQHENSSVVYISFGSVVT 285
Query: 327 FTSAQLMEIATGLEASGRNFIWVVSXXXXXXXXXXXXXWLPEGFEKRMEGKGLIIRGWAP 386
+L +A LE G FIW LP+GF +R + KG I+ WAP
Sbjct: 286 PPPHELTALAESLEECGFPFIWSFRGDPKEK--------LPKGFLERTKTKGKIV-AWAP 336
Query: 387 QVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGI 446
QV IL H +VG F+TH GWNS LE + GVP+++ P +Q N + +L+IGVGV
Sbjct: 337 QVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVD- 395
Query: 447 QKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSAL 506
+ +E+I+KA+ M ++ MR + L + A +AVE G+S D + L
Sbjct: 396 -------NGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTL 448
Query: 507 IE 508
I+
Sbjct: 449 IQ 450
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 11/86 (12%)
Query: 381 IRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKI 440
+ W PQ+ IL + F+TH G ST+EA++ VP+V P AEQ N + I+++
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAE---RIVEL 363
Query: 441 GVGVGIQKWCRIVGDFVKRETIEKAV 466
G+G I + D V E + +AV
Sbjct: 364 GLGRHIPR------DQVTAEKLREAV 383
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 19/136 (13%)
Query: 381 IRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKI 440
+ W PQ+ IL + FVTH G + E +A P++ P A +QF N M+
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQ----- 339
Query: 441 GVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSY 500
G+GV + + RET V++ V R ++ A+ A E G
Sbjct: 340 GLGVARKLATEEATADLLRETALALVDDPEVARRLRRIQ---------AEMAQEGGTRRA 390
Query: 501 SDLSALIEELRLSRHQ 516
+D LIE +RH+
Sbjct: 391 AD---LIEAELPARHE 403
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 29 MGSEIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVER 84
M ++ H+ F AHGH+ P +++ + RG + + P A V+ + R
Sbjct: 1 MTTQTTPAHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATGPR 56
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 365 WLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVA 424
W +G + G + W PQ +L H F+TH G N EA+ G+P V P+
Sbjct: 56 WRFDGNKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLF 115
Query: 425 AEQ 427
A+Q
Sbjct: 116 ADQ 118
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 381 IRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQF 428
+ W PQ +L H V V H G +TL A+ AGVP +++P A + F
Sbjct: 296 LESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 72
Q H+ F HGH+ P + + A RG + + +TTP
Sbjct: 4 QRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTP 41
>pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransferase Gtfb
Length = 415
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 19/88 (21%)
Query: 373 RMEGKGLII-RGWAPQVLILD-----------HEA----VGGFVTHCGWNSTLEAVAAGV 416
R G+ +I+ RGWA VL D H+ V + H G +T A AG
Sbjct: 263 RAHGRRVILSRGWADLVLPDDGADCFAIGEVNHQVLFGRVAAVIHHGGAGTTHVAARAGA 322
Query: 417 PLVTWPVAAEQFYNEKMVNEILKIGVGV 444
P + P A+Q Y V E +GVGV
Sbjct: 323 PQILLPQMADQPYYAGRVAE---LGVGV 347
>pdb|4F2G|A Chain A, The Crystal Structure Of Ornithine Carbamoyltransferase
From Burkholderia Thailandensis E264
Length = 309
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 365 WLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGV----PLVT 420
W GFE E + W ++ H HC E V AGV V
Sbjct: 225 WTSMGFEAENEARKRAFADWCVDEEMMSHANSDALFMHCLPAHRGEEVTAGVIDGPQSVV 284
Query: 421 WPVAAEQFYNEKMVNEILKIG 441
W A + + +K + E L +G
Sbjct: 285 WDEAENRLHVQKALMEFLLLG 305
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 384 WAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVG 443
W P V +L+ V VTH G + EA+ G PLV P + F + + ++G+G
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVP---QSFDVQPXARRVDQLGLG 358
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 384 WAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVG 443
W P V +L+ V VTH G + EA+ G PLV P + F + + ++G+G
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVP---QSFDVQPXARRVDQLGLG 358
>pdb|2Y52|A Chain A, Crystal Structure Of E496a Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
pdb|2Y52|B Chain B, Crystal Structure Of E496a Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
Length = 534
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 405 WNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGV 442
W A+ +GVP++ P A + ++MV +++ G+
Sbjct: 169 WEKAAPALLSGVPVIVKPATATAWLTQRMVADVVDAGI 206
>pdb|2Y5D|A Chain A, Crystal Structure Of C296a Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
pdb|2Y5D|B Chain B, Crystal Structure Of C296a Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
Length = 534
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 405 WNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGV 442
W A+ +GVP++ P A + ++MV +++ G+
Sbjct: 169 WEKAAPALLSGVPVIVKPATATAWLTQRMVADVVDAGI 206
>pdb|2Y53|A Chain A, Crystal Structure Of E257q Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
pdb|2Y53|B Chain B, Crystal Structure Of E257q Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
Length = 534
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 405 WNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGV 442
W A+ +GVP++ P A + ++MV +++ G+
Sbjct: 169 WEKAAPALLSGVPVIVKPATATAWLTQRMVADVVDAGI 206
>pdb|2VRO|A Chain A, Crystal Structure Of Aldehyde Dehydrogenase From
Burkholderia Xenovorans Lb400
pdb|2VRO|B Chain B, Crystal Structure Of Aldehyde Dehydrogenase From
Burkholderia Xenovorans Lb400
Length = 532
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 405 WNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGV 442
W A+ +GVP++ P A + ++MV +++ G+
Sbjct: 167 WEKAAPALLSGVPVIVKPATATAWLTQRMVADVVDAGI 204
>pdb|3GE4|A Chain A, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|B Chain B, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|C Chain C, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|D Chain D, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|E Chain E, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|F Chain F, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|G Chain G, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|H Chain H, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|I Chain I, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|J Chain J, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|K Chain K, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|L Chain L, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
Length = 173
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 465 AVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEELRL 512
AV+E++ G RAE + +A+RAV+ GG++Y +++E RL
Sbjct: 61 AVHEMLDGFRAE----LDDHVDTIAERAVQIGGTAYGTTQVVVKESRL 104
>pdb|2Y51|A Chain A, Crystal Structure Of E167a Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
pdb|2Y51|B Chain B, Crystal Structure Of E167a Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
Length = 534
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 405 WNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGV 442
W A+ +GVP++ P A + ++MV +++ G+
Sbjct: 169 WAKAAPALLSGVPVIVKPATATAWLTQRMVADVVDAGI 206
>pdb|3VLM|A Chain A, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLM|B Chain B, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
Length = 737
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 202 EPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPA 261
E F+ P P E + ++ LPD +GD + + L + I DSDL +V+ + A
Sbjct: 415 ERFLGPEVPDEEMIWQDPLPDADYDLIGDEEIAELKEEILDSDL-----SVSQLVKTAWA 469
Query: 262 YADHYRKALGR 272
A YR + R
Sbjct: 470 SASTYRDSDKR 480
>pdb|3VLH|A Chain A, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLH|B Chain B, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLI|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLI|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLJ|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
pdb|3VLJ|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
Length = 737
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 202 EPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPA 261
E F+ P P E + ++ LPD +GD + + L + I DSDL +V+ + A
Sbjct: 415 ERFLGPEVPDEEMIWQDPLPDADYDLIGDEEIAELKEEILDSDL-----SVSQLVKTAWA 469
Query: 262 YADHYRKALGR 272
A YR + R
Sbjct: 470 SASTYRDSDKR 480
>pdb|3VLK|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLK|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLL|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
pdb|3VLL|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
Length = 737
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 202 EPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPA 261
E F+ P P E + ++ LPD +GD + + L + I DSDL +V+ + A
Sbjct: 415 ERFLGPEVPDEEMIWQDPLPDADYDLIGDEEIAELKEEILDSDL-----SVSQLVKTAWA 469
Query: 262 YADHYRKALGR 272
A YR + R
Sbjct: 470 SASTYRDSDKR 480
>pdb|3UW8|A Chain A, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
pdb|3UW8|B Chain B, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
Length = 737
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 202 EPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPA 261
E F+ P P E + ++ LPD +GD + + L + I DSDL +V+ + A
Sbjct: 415 ERFLGPEVPDEEMIWQDPLPDADYDLIGDEEIAELKEEILDSDL-----SVSQLVKTAWA 469
Query: 262 YADHYRKALGR 272
A YR + R
Sbjct: 470 SASTYRDSDKR 480
>pdb|1ITK|A Chain A, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
pdb|1ITK|B Chain B, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
Length = 731
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 202 EPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPA 261
E F+ P P E + ++ LPD +GD + + L + I DSDL +V+ + A
Sbjct: 415 ERFLGPEVPDEEMIWQDPLPDADYDLIGDEEIAELKEEILDSDL-----SVSQLVKTAWA 469
Query: 262 YADHYRKALGR 272
A YR + R
Sbjct: 470 SASTYRDSDKR 480
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 454 GDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDL-SALIEEL 510
G KR EK I GD E + LGK AK +E G DL ALIEE+
Sbjct: 14 GTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEV 71
>pdb|3PJQ|A Chain A, Trypanosoma Cruzi Trans-Sialidase-Like Inactive Isoform
(Including The Natural Mutation Tyr342his) In Complex
With Lactose
Length = 648
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 272 RRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVY 318
+R +++G VS+ + N ++ K D+L CL +NS + YS+V+
Sbjct: 339 QRIYNVGQVSIGDENSAHSSVLYKD---DKLYCLHEINSNEVYSLVF 382
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,367,248
Number of Sequences: 62578
Number of extensions: 571701
Number of successful extensions: 1453
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1400
Number of HSP's gapped (non-prelim): 39
length of query: 518
length of database: 14,973,337
effective HSP length: 103
effective length of query: 415
effective length of database: 8,527,803
effective search space: 3539038245
effective search space used: 3539038245
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)