Query 010093
Match_columns 518
No_of_seqs 133 out of 1268
Neff 9.6
Searched_HMMs 46136
Date Thu Mar 28 20:58:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010093.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010093hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02534 UDP-glycosyltransfera 100.0 2.6E-66 5.7E-71 527.6 46.7 471 34-513 7-487 (491)
2 PLN03007 UDP-glucosyltransfera 100.0 1.2E-64 2.6E-69 521.4 48.4 472 34-512 4-480 (482)
3 PLN02863 UDP-glucoronosyl/UDP- 100.0 2.3E-64 5E-69 514.6 46.6 460 34-515 8-474 (477)
4 PLN02992 coniferyl-alcohol glu 100.0 6.2E-63 1.3E-67 500.9 45.1 441 34-513 4-470 (481)
5 PLN02410 UDP-glucoronosyl/UDP- 100.0 8.8E-63 1.9E-67 499.6 45.7 437 29-512 1-450 (451)
6 PLN02208 glycosyltransferase f 100.0 6.2E-63 1.4E-67 499.4 44.5 435 34-513 3-440 (442)
7 PLN02173 UDP-glucosyl transfer 100.0 2.4E-62 5.2E-67 494.0 45.0 434 33-511 3-447 (449)
8 PLN02670 transferase, transfer 100.0 3.1E-62 6.7E-67 495.4 45.2 458 34-514 5-467 (472)
9 PLN02555 limonoid glucosyltran 100.0 4.2E-62 9.2E-67 496.2 44.8 457 29-513 1-470 (480)
10 PLN02207 UDP-glycosyltransfera 100.0 1E-61 2.2E-66 491.1 45.9 448 33-512 1-465 (468)
11 PLN02764 glycosyltransferase f 100.0 1.4E-61 3.1E-66 486.6 46.3 440 34-515 4-448 (453)
12 PLN02210 UDP-glucosyl transfer 100.0 2.2E-61 4.8E-66 491.3 44.5 440 34-512 7-455 (456)
13 PLN03015 UDP-glucosyl transfer 100.0 3.1E-61 6.6E-66 485.6 44.8 443 34-510 2-466 (470)
14 PLN00164 glucosyltransferase; 100.0 8E-61 1.7E-65 490.3 45.8 451 33-514 1-475 (480)
15 PLN02562 UDP-glycosyltransfera 100.0 1.5E-60 3.2E-65 484.9 44.3 427 34-510 5-447 (448)
16 PLN02152 indole-3-acetate beta 100.0 2E-60 4.2E-65 480.9 43.5 438 34-510 2-454 (455)
17 PLN00414 glycosyltransferase f 100.0 2.8E-60 6E-65 480.7 43.7 435 35-515 4-443 (446)
18 PLN03004 UDP-glycosyltransfera 100.0 1E-60 2.2E-65 482.5 39.7 434 36-501 4-450 (451)
19 PLN02554 UDP-glycosyltransfera 100.0 1.1E-59 2.4E-64 483.8 44.8 449 35-512 2-478 (481)
20 PLN02448 UDP-glycosyltransfera 100.0 1.4E-59 3.1E-64 481.4 43.8 438 33-513 8-458 (459)
21 PLN02167 UDP-glycosyltransfera 100.0 1.6E-58 3.4E-63 474.7 44.5 456 33-512 1-472 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 2.3E-51 4.9E-56 423.4 29.6 411 35-511 20-465 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 2.6E-51 5.6E-56 430.4 3.9 384 37-491 2-425 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 7.5E-43 1.6E-47 355.0 26.0 381 41-510 1-389 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 4.8E-42 1E-46 350.6 23.0 393 36-509 1-400 (401)
26 COG1819 Glycosyl transferases, 100.0 1.3E-41 2.9E-46 341.7 20.2 394 35-514 1-402 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 7.1E-41 1.5E-45 351.5 17.9 416 35-499 5-443 (496)
28 PRK12446 undecaprenyldiphospho 99.9 5.8E-24 1.3E-28 211.3 29.6 323 35-484 1-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 3.3E-24 7.1E-29 212.1 23.6 309 36-469 1-317 (318)
30 TIGR00661 MJ1255 conserved hyp 99.9 7.4E-22 1.6E-26 194.9 22.1 308 37-479 1-318 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.9 9.8E-20 2.1E-24 178.8 28.8 324 36-490 1-336 (357)
32 PRK00726 murG undecaprenyldiph 99.8 5.8E-17 1.3E-21 163.0 29.5 326 35-488 1-337 (357)
33 cd03785 GT1_MurG MurG is an N- 99.7 2.2E-15 4.8E-20 151.1 30.1 319 37-482 1-331 (350)
34 TIGR01133 murG undecaprenyldip 99.7 3.1E-14 6.7E-19 142.7 28.7 83 386-482 243-328 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.7 4.3E-14 9.4E-19 142.7 27.3 347 36-508 6-384 (385)
36 PRK13609 diacylglycerol glucos 99.6 1.7E-14 3.7E-19 146.3 22.3 139 313-481 201-344 (380)
37 COG4671 Predicted glycosyl tra 99.6 1.5E-14 3.2E-19 135.4 18.9 340 34-471 8-364 (400)
38 TIGR03590 PseG pseudaminic aci 99.6 1.4E-13 3E-18 132.6 23.3 104 315-433 171-278 (279)
39 PRK13608 diacylglycerol glucos 99.6 2.6E-13 5.6E-18 137.8 23.1 165 313-511 201-370 (391)
40 PRK00025 lpxB lipid-A-disaccha 99.6 1E-12 2.3E-17 133.3 25.9 351 35-512 1-376 (380)
41 PF04101 Glyco_tran_28_C: Glyc 99.4 1.2E-14 2.6E-19 129.4 -0.5 135 316-471 1-143 (167)
42 PLN02605 monogalactosyldiacylg 99.4 5.6E-11 1.2E-15 120.5 26.0 132 312-471 204-346 (382)
43 PLN02871 UDP-sulfoquinovose:DA 99.4 6E-09 1.3E-13 108.6 35.4 155 316-508 264-429 (465)
44 TIGR03492 conserved hypothetic 99.3 1.2E-09 2.5E-14 110.6 25.2 142 313-483 204-372 (396)
45 PF03033 Glyco_transf_28: Glyc 99.3 5.1E-12 1.1E-16 108.7 6.2 124 38-179 1-132 (139)
46 cd03814 GT1_like_2 This family 99.2 2.4E-08 5.2E-13 100.0 31.5 154 315-508 197-361 (364)
47 COG3980 spsG Spore coat polysa 99.2 7E-09 1.5E-13 94.9 20.2 141 316-484 160-302 (318)
48 cd03823 GT1_ExpE7_like This fa 99.2 7.8E-08 1.7E-12 96.0 30.3 135 314-481 190-335 (359)
49 cd03818 GT1_ExpC_like This fam 99.1 1.5E-07 3.2E-12 96.1 31.5 103 376-499 280-387 (396)
50 cd03800 GT1_Sucrose_synthase T 99.1 6.7E-08 1.4E-12 98.5 28.3 158 316-504 221-394 (398)
51 cd04962 GT1_like_5 This family 99.1 3.5E-07 7.7E-12 92.2 31.9 161 316-510 198-368 (371)
52 cd03816 GT1_ALG1_like This fam 99.1 3.5E-07 7.7E-12 93.8 31.0 123 34-176 2-129 (415)
53 cd03817 GT1_UGDG_like This fam 99.1 2.5E-07 5.4E-12 92.7 29.5 78 376-471 258-342 (374)
54 cd03794 GT1_wbuB_like This fam 99.1 2.2E-07 4.8E-12 93.5 29.2 134 314-481 219-371 (394)
55 PRK10307 putative glycosyl tra 99.0 1.4E-06 3E-11 89.5 34.5 165 316-515 230-410 (412)
56 cd03801 GT1_YqgM_like This fam 99.0 4E-07 8.6E-12 90.7 29.8 338 46-508 14-371 (374)
57 cd03808 GT1_cap1E_like This fa 99.0 2.8E-07 6.1E-12 91.6 28.3 131 314-471 187-328 (359)
58 PRK05749 3-deoxy-D-manno-octul 99.0 7E-07 1.5E-11 92.0 28.7 77 388-481 314-394 (425)
59 cd03825 GT1_wcfI_like This fam 98.9 1.4E-06 3.1E-11 87.4 28.7 113 376-511 243-363 (365)
60 cd03798 GT1_wlbH_like This fam 98.9 2.7E-06 5.8E-11 85.0 29.7 79 376-471 258-343 (377)
61 cd03820 GT1_amsD_like This fam 98.9 9.8E-07 2.1E-11 87.2 25.7 91 376-486 234-330 (348)
62 TIGR00236 wecB UDP-N-acetylglu 98.9 4E-07 8.6E-12 91.8 22.1 137 314-483 197-342 (365)
63 cd03795 GT1_like_4 This family 98.8 2.4E-06 5.2E-11 85.5 26.8 127 316-471 192-331 (357)
64 cd03805 GT1_ALG2_like This fam 98.8 4.2E-06 9.1E-11 85.2 28.2 78 376-471 279-363 (392)
65 PRK14089 ipid-A-disaccharide s 98.8 1.8E-06 3.9E-11 85.1 24.2 154 314-490 167-333 (347)
66 cd03796 GT1_PIG-A_like This fa 98.8 4.9E-06 1.1E-10 85.0 28.7 114 376-514 249-369 (398)
67 PF04007 DUF354: Protein of un 98.8 6.4E-06 1.4E-10 80.6 27.4 299 36-470 1-308 (335)
68 cd03821 GT1_Bme6_like This fam 98.8 8.4E-06 1.8E-10 81.5 28.3 107 376-505 261-372 (375)
69 cd03799 GT1_amsK_like This is 98.8 1.3E-05 2.9E-10 80.0 29.2 100 376-498 235-347 (355)
70 TIGR03449 mycothiol_MshA UDP-N 98.7 6.2E-05 1.3E-09 77.0 33.4 111 376-510 282-399 (405)
71 cd03786 GT1_UDP-GlcNAc_2-Epime 98.7 5.8E-07 1.3E-11 90.5 17.3 134 313-471 197-336 (363)
72 cd03822 GT1_ecORF704_like This 98.7 4.4E-05 9.5E-10 76.4 30.8 108 376-508 246-363 (366)
73 TIGR02472 sucr_P_syn_N sucrose 98.7 4.7E-05 1E-09 78.8 30.9 166 316-508 249-436 (439)
74 cd03811 GT1_WabH_like This fam 98.7 6.3E-06 1.4E-10 81.5 23.3 141 314-484 188-341 (353)
75 cd05844 GT1_like_7 Glycosyltra 98.6 1.9E-05 4.2E-10 79.4 26.0 79 376-471 244-335 (367)
76 cd03807 GT1_WbnK_like This fam 98.6 6.9E-05 1.5E-09 74.6 29.5 158 315-508 193-362 (365)
77 cd03819 GT1_WavL_like This fam 98.6 5.6E-05 1.2E-09 75.5 27.9 81 376-471 245-329 (355)
78 PRK09922 UDP-D-galactose:(gluc 98.6 6.8E-06 1.5E-10 82.7 21.0 131 316-471 181-323 (359)
79 PLN02846 digalactosyldiacylgly 98.6 1.8E-05 3.8E-10 80.9 23.5 120 319-471 232-362 (462)
80 PLN02275 transferase, transfer 98.6 0.00034 7.3E-09 70.7 32.5 76 376-470 285-371 (371)
81 TIGR02149 glgA_Coryne glycogen 98.6 0.00011 2.3E-09 74.7 29.2 169 316-511 202-385 (388)
82 cd04951 GT1_WbdM_like This fam 98.6 9.5E-05 2E-09 74.0 28.2 127 314-471 187-325 (360)
83 TIGR02468 sucrsPsyn_pln sucros 98.6 0.00013 2.8E-09 80.6 30.6 181 303-512 469-670 (1050)
84 TIGR02470 sucr_synth sucrose s 98.5 0.00031 6.8E-09 75.9 32.4 115 376-508 618-743 (784)
85 TIGR03088 stp2 sugar transfera 98.5 9.6E-05 2.1E-09 74.7 27.5 111 377-510 255-370 (374)
86 cd03802 GT1_AviGT4_like This f 98.5 2.3E-05 5.1E-10 77.6 22.7 127 317-471 173-307 (335)
87 cd04955 GT1_like_6 This family 98.5 0.00018 4E-09 72.0 28.8 155 318-509 196-361 (363)
88 PLN00142 sucrose synthase 98.5 6.8E-05 1.5E-09 80.9 25.2 112 376-508 641-766 (815)
89 COG1519 KdtA 3-deoxy-D-manno-o 98.4 0.00049 1.1E-08 67.8 28.4 59 399-471 327-385 (419)
90 TIGR03087 stp1 sugar transfera 98.4 2.9E-05 6.3E-10 79.3 21.0 110 375-509 278-393 (397)
91 cd03812 GT1_CapH_like This fam 98.4 0.00012 2.6E-09 73.2 24.6 86 376-482 248-338 (358)
92 PRK01021 lpxB lipid-A-disaccha 98.4 0.00044 9.5E-09 72.0 27.6 199 270-501 379-597 (608)
93 PRK15427 colanic acid biosynth 98.4 0.00037 8E-09 71.3 26.8 162 315-511 222-404 (406)
94 PLN02949 transferase, transfer 98.3 0.0031 6.7E-08 65.4 33.4 114 376-512 334-456 (463)
95 cd03804 GT1_wbaZ_like This fam 98.3 4.6E-05 1E-09 76.3 19.6 125 317-471 197-325 (351)
96 PF02350 Epimerase_2: UDP-N-ac 98.3 1.5E-05 3.2E-10 79.3 14.5 129 312-471 178-317 (346)
97 TIGR03568 NeuC_NnaA UDP-N-acet 98.3 0.00033 7.2E-09 70.4 23.6 131 314-471 201-338 (365)
98 cd03809 GT1_mtfB_like This fam 98.3 0.00085 1.8E-08 67.0 26.7 91 375-487 251-348 (365)
99 PF02684 LpxB: Lipid-A-disacch 98.3 0.00096 2.1E-08 66.4 26.2 199 269-501 150-366 (373)
100 cd03792 GT1_Trehalose_phosphor 98.2 0.00088 1.9E-08 67.7 26.5 112 376-512 251-371 (372)
101 PRK15179 Vi polysaccharide bio 98.2 0.004 8.6E-08 67.3 31.6 93 376-483 573-671 (694)
102 PRK00654 glgA glycogen synthas 98.1 0.0026 5.6E-08 66.4 27.2 166 315-511 282-461 (466)
103 cd03791 GT1_Glycogen_synthase_ 98.1 0.0021 4.6E-08 67.3 26.1 163 316-509 297-473 (476)
104 PLN02316 synthase/transferase 98.0 0.021 4.6E-07 63.8 33.6 170 316-514 841-1035(1036)
105 KOG3349 Predicted glycosyltran 98.0 3.5E-05 7.6E-10 63.9 7.7 120 316-447 5-135 (170)
106 TIGR02095 glgA glycogen/starch 98.0 0.014 3.1E-07 61.0 29.5 158 316-510 292-470 (473)
107 COG0381 WecB UDP-N-acetylgluco 98.0 0.0017 3.7E-08 63.5 20.5 161 314-512 204-370 (383)
108 cd03806 GT1_ALG11_like This fa 97.9 0.0013 2.8E-08 67.6 20.5 78 376-471 304-391 (419)
109 cd04950 GT1_like_1 Glycosyltra 97.9 0.037 8.1E-07 55.9 30.9 77 376-471 253-339 (373)
110 COG0763 LpxB Lipid A disacchar 97.8 0.018 3.9E-07 56.4 25.2 213 258-509 146-378 (381)
111 PF13844 Glyco_transf_41: Glyc 97.8 0.00034 7.3E-09 71.1 13.4 174 313-512 283-462 (468)
112 cd04946 GT1_AmsK_like This fam 97.7 0.00035 7.6E-09 71.5 11.9 161 315-507 230-406 (407)
113 PF00534 Glycos_transf_1: Glyc 97.6 0.00055 1.2E-08 60.8 10.7 141 313-482 13-165 (172)
114 PRK10125 putative glycosyl tra 97.6 0.019 4E-07 58.7 22.9 114 317-466 243-365 (405)
115 cd04949 GT1_gtfA_like This fam 97.5 0.0087 1.9E-07 60.3 19.6 82 376-471 260-344 (372)
116 COG5017 Uncharacterized conser 97.5 0.0008 1.7E-08 55.0 8.9 127 317-471 2-141 (161)
117 TIGR02918 accessory Sec system 97.5 0.053 1.1E-06 56.9 24.8 134 316-471 320-466 (500)
118 PRK15484 lipopolysaccharide 1, 97.5 0.0036 7.8E-08 63.5 15.5 114 376-512 256-377 (380)
119 PLN02501 digalactosyldiacylgly 97.4 0.015 3.2E-07 61.7 18.7 122 315-471 548-680 (794)
120 cd03813 GT1_like_3 This family 97.3 0.035 7.6E-07 58.1 21.5 152 315-498 293-462 (475)
121 PRK15490 Vi polysaccharide bio 97.2 0.21 4.5E-06 52.2 25.2 114 376-512 454-575 (578)
122 PRK14099 glycogen synthase; Pr 97.2 0.39 8.4E-06 50.3 27.8 41 33-73 1-47 (485)
123 cd01635 Glycosyltransferase_GT 97.1 0.074 1.6E-06 48.8 19.4 49 376-426 160-216 (229)
124 PF13477 Glyco_trans_4_2: Glyc 96.8 0.016 3.4E-07 49.3 10.4 103 37-176 1-107 (139)
125 PRK09814 beta-1,6-galactofuran 96.7 0.0094 2E-07 59.2 10.0 111 376-508 206-331 (333)
126 PF06722 DUF1205: Protein of u 96.7 0.0017 3.7E-08 51.2 3.2 55 300-354 26-85 (97)
127 PF13692 Glyco_trans_1_4: Glyc 96.5 0.0063 1.4E-07 51.4 6.4 79 376-471 52-134 (135)
128 TIGR02193 heptsyl_trn_I lipopo 96.3 0.12 2.6E-06 50.9 15.1 45 37-81 1-47 (319)
129 COG1817 Uncharacterized protei 96.2 1.2 2.6E-05 42.5 22.3 108 43-178 7-114 (346)
130 KOG4626 O-linked N-acetylgluco 96.2 0.075 1.6E-06 54.8 12.3 122 313-446 757-889 (966)
131 PRK10422 lipopolysaccharide co 96.0 1.3 2.8E-05 44.3 20.7 107 34-173 4-113 (352)
132 COG3914 Spy Predicted O-linked 95.9 0.098 2.1E-06 53.7 11.8 126 312-445 427-561 (620)
133 PF13579 Glyco_trans_4_4: Glyc 95.9 0.021 4.5E-07 49.3 6.5 95 51-176 6-104 (160)
134 PHA01633 putative glycosyl tra 95.9 0.14 3.1E-06 50.4 12.8 84 376-471 200-306 (335)
135 TIGR02201 heptsyl_trn_III lipo 94.7 2.8 6E-05 41.7 17.9 105 37-173 1-108 (344)
136 PRK14098 glycogen synthase; Pr 94.6 0.76 1.6E-05 48.2 14.1 164 316-512 308-485 (489)
137 PRK10017 colanic acid biosynth 94.3 1.7 3.7E-05 44.5 15.4 100 388-510 322-422 (426)
138 PF12000 Glyco_trans_4_3: Gkyc 94.2 0.64 1.4E-05 40.8 10.5 43 135-177 53-97 (171)
139 PF01975 SurE: Survival protei 94.0 0.17 3.6E-06 45.8 6.7 119 36-177 1-134 (196)
140 PF13524 Glyco_trans_1_2: Glyc 93.5 0.63 1.4E-05 36.1 8.6 83 402-507 9-91 (92)
141 COG0859 RfaF ADP-heptose:LPS h 93.0 10 0.00022 37.6 19.5 104 35-173 1-107 (334)
142 PF13439 Glyco_transf_4: Glyco 92.1 0.32 6.9E-06 42.5 5.7 29 45-73 11-39 (177)
143 TIGR02400 trehalose_OtsA alpha 91.8 1 2.3E-05 46.6 9.8 108 382-511 341-455 (456)
144 PLN02939 transferase, transfer 91.8 1.6 3.5E-05 48.6 11.4 116 376-508 836-962 (977)
145 TIGR02195 heptsyl_trn_II lipop 91.5 16 0.00034 36.1 20.5 102 37-173 1-105 (334)
146 COG1703 ArgK Putative periplas 91.3 1.8 4E-05 41.2 9.7 131 22-174 40-172 (323)
147 cd03789 GT1_LPS_heptosyltransf 90.9 15 0.00033 35.1 17.7 45 37-81 1-47 (279)
148 PHA01630 putative group 1 glyc 90.7 3.4 7.3E-05 40.9 11.8 111 383-511 196-329 (331)
149 PF08660 Alg14: Oligosaccharid 89.8 6 0.00013 34.8 11.4 36 142-177 87-130 (170)
150 PLN03063 alpha,alpha-trehalose 88.3 6.1 0.00013 44.1 12.6 104 389-514 371-479 (797)
151 PRK13932 stationary phase surv 88.3 5.1 0.00011 37.8 10.3 43 34-78 4-46 (257)
152 COG0496 SurE Predicted acid ph 87.6 4.9 0.00011 37.6 9.5 113 36-177 1-126 (252)
153 TIGR03713 acc_sec_asp1 accesso 87.5 3.1 6.6E-05 43.9 9.3 73 377-471 409-487 (519)
154 COG1618 Predicted nucleotide k 84.4 5.5 0.00012 34.5 7.5 39 35-73 5-43 (179)
155 PRK10916 ADP-heptose:LPS hepto 84.1 7 0.00015 38.9 9.6 103 36-173 1-106 (348)
156 cd03788 GT1_TPS Trehalose-6-Ph 83.7 3.7 7.9E-05 42.8 7.6 104 381-510 345-459 (460)
157 PF02951 GSH-S_N: Prokaryotic 83.4 1.7 3.7E-05 35.7 3.9 39 36-74 1-42 (119)
158 PRK13933 stationary phase surv 83.1 12 0.00027 35.2 10.1 40 36-77 1-40 (253)
159 COG0003 ArsA Predicted ATPase 83.0 20 0.00043 35.2 11.8 43 35-77 1-44 (322)
160 PRK02261 methylaspartate mutas 82.5 3 6.5E-05 35.3 5.3 47 33-79 1-47 (137)
161 TIGR02919 accessory Sec system 82.4 37 0.00081 35.0 14.1 135 313-486 282-422 (438)
162 TIGR00715 precor6x_red precorr 81.5 9.8 0.00021 36.0 8.9 37 138-174 56-98 (256)
163 PRK10964 ADP-heptose:LPS hepto 80.6 7.4 0.00016 38.3 8.2 44 36-79 1-46 (322)
164 PRK00346 surE 5'(3')-nucleotid 78.7 29 0.00062 32.7 10.9 41 36-78 1-41 (250)
165 PF02441 Flavoprotein: Flavopr 78.4 2 4.3E-05 36.0 2.9 45 36-81 1-45 (129)
166 PRK13935 stationary phase surv 77.6 22 0.00047 33.5 9.7 41 36-78 1-41 (253)
167 COG0438 RfaG Glycosyltransfera 77.6 67 0.0015 30.6 16.1 79 376-471 256-341 (381)
168 PRK14501 putative bifunctional 76.6 6.2 0.00013 43.7 6.9 113 379-513 344-463 (726)
169 TIGR00087 surE 5'/3'-nucleotid 75.9 25 0.00055 33.0 9.7 42 36-79 1-42 (244)
170 PRK13934 stationary phase surv 75.2 52 0.0011 31.3 11.5 41 36-78 1-41 (266)
171 COG4370 Uncharacterized protei 75.0 14 0.00029 35.5 7.5 65 406-483 320-387 (412)
172 PRK14098 glycogen synthase; Pr 74.8 4.9 0.00011 42.2 5.2 40 34-73 4-49 (489)
173 PRK05647 purN phosphoribosylgl 74.1 27 0.00058 31.7 9.2 35 35-72 1-37 (200)
174 COG2894 MinD Septum formation 73.7 16 0.00035 33.4 7.3 39 35-73 1-41 (272)
175 PF03308 ArgK: ArgK protein; 72.6 11 0.00024 35.5 6.3 133 22-176 18-152 (266)
176 cd07039 TPP_PYR_POX Pyrimidine 72.5 30 0.00065 30.2 8.9 27 396-422 64-96 (164)
177 PRK05973 replicative DNA helic 72.1 14 0.00031 34.4 7.1 44 37-80 66-109 (237)
178 PF00551 Formyl_trans_N: Formy 71.7 44 0.00095 29.7 10.0 42 136-177 68-110 (181)
179 cd02067 B12-binding B12 bindin 71.5 6.1 0.00013 32.3 4.1 37 37-73 1-37 (119)
180 PF06925 MGDG_synth: Monogalac 71.5 10 0.00023 33.2 5.8 43 134-176 76-124 (169)
181 PRK08305 spoVFB dipicolinate s 71.5 6.4 0.00014 35.5 4.4 43 34-76 4-46 (196)
182 PF04413 Glycos_transf_N: 3-De 70.0 16 0.00035 32.7 6.7 100 37-176 22-126 (186)
183 PF02571 CbiJ: Precorrin-6x re 69.7 14 0.0003 34.9 6.5 38 137-174 56-99 (249)
184 cd07038 TPP_PYR_PDC_IPDC_like 69.5 26 0.00056 30.5 7.8 28 396-423 60-93 (162)
185 COG2910 Putative NADH-flavin r 69.3 5.5 0.00012 35.2 3.4 33 36-73 1-34 (211)
186 PRK07313 phosphopantothenoylcy 68.7 5.3 0.00012 35.6 3.3 44 35-79 1-44 (182)
187 PF12146 Hydrolase_4: Putative 68.5 9.4 0.0002 28.7 4.2 34 36-69 16-49 (79)
188 PRK08057 cobalt-precorrin-6x r 68.0 36 0.00078 32.1 8.9 91 35-174 2-98 (248)
189 COG2874 FlaH Predicted ATPases 65.1 30 0.00064 31.6 7.2 30 45-74 38-67 (235)
190 KOG2941 Beta-1,4-mannosyltrans 64.8 1.5E+02 0.0033 29.3 23.0 127 34-181 11-142 (444)
191 PRK12342 hypothetical protein; 64.6 12 0.00027 35.2 5.0 40 138-177 100-145 (254)
192 PRK06849 hypothetical protein; 64.1 40 0.00086 34.1 9.1 36 34-73 3-38 (389)
193 PRK06321 replicative DNA helic 63.7 57 0.0012 34.0 10.2 42 37-78 228-270 (472)
194 PRK06029 3-octaprenyl-4-hydrox 63.5 7.4 0.00016 34.8 3.2 44 35-79 1-45 (185)
195 PRK05595 replicative DNA helic 63.2 40 0.00087 34.9 9.0 42 37-78 203-245 (444)
196 PF04127 DFP: DNA / pantothena 62.7 7.6 0.00016 34.7 3.1 38 36-73 4-53 (185)
197 cd01121 Sms Sms (bacterial rad 62.3 86 0.0019 31.6 10.8 41 38-78 85-125 (372)
198 PF06258 Mito_fiss_Elm1: Mitoc 61.9 36 0.00078 33.3 7.9 56 386-444 221-280 (311)
199 PRK05920 aromatic acid decarbo 61.7 9.6 0.00021 34.6 3.6 44 35-79 3-46 (204)
200 PRK13931 stationary phase surv 61.5 90 0.0019 29.6 10.2 42 36-78 1-45 (261)
201 PF02310 B12-binding: B12 bind 61.0 16 0.00034 29.8 4.6 37 37-73 2-38 (121)
202 PF07355 GRDB: Glycine/sarcosi 60.9 17 0.00036 35.7 5.2 42 133-174 66-117 (349)
203 cd01980 Chlide_reductase_Y Chl 60.8 61 0.0013 33.2 9.8 33 141-176 344-376 (416)
204 PRK08760 replicative DNA helic 60.7 32 0.00069 35.9 7.7 42 37-78 231-273 (476)
205 PF07429 Glyco_transf_56: 4-al 59.8 66 0.0014 31.7 9.0 83 376-471 244-332 (360)
206 PRK02797 4-alpha-L-fucosyltran 59.8 65 0.0014 31.3 8.9 82 376-470 205-292 (322)
207 cd00550 ArsA_ATPase Oxyanion-t 59.5 48 0.001 31.3 8.2 43 38-81 3-45 (254)
208 PLN02470 acetolactate synthase 59.4 28 0.00061 37.5 7.3 92 320-422 2-109 (585)
209 cd00984 DnaB_C DnaB helicase C 59.1 44 0.00094 31.1 7.9 42 38-79 16-58 (242)
210 PF09314 DUF1972: Domain of un 58.0 1.4E+02 0.003 26.7 10.8 57 36-99 2-63 (185)
211 PRK13789 phosphoribosylamine-- 57.4 38 0.00083 34.8 7.6 34 34-72 3-36 (426)
212 PF02585 PIG-L: GlcNAc-PI de-N 57.4 64 0.0014 26.5 7.8 21 134-154 87-107 (128)
213 cd03793 GT1_Glycogen_synthase_ 57.0 38 0.00082 36.0 7.4 79 386-471 467-551 (590)
214 PRK08506 replicative DNA helic 56.9 72 0.0016 33.3 9.6 42 37-78 194-235 (472)
215 PRK15062 hydrogenase isoenzyme 56.4 64 0.0014 31.9 8.4 146 302-510 119-266 (364)
216 PRK03359 putative electron tra 56.3 21 0.00046 33.7 5.1 40 138-177 103-148 (256)
217 TIGR02655 circ_KaiC circadian 55.9 23 0.00049 37.2 5.8 46 36-81 264-309 (484)
218 cd01424 MGS_CPS_II Methylglyox 55.6 67 0.0015 25.7 7.4 84 47-173 10-100 (110)
219 KOG1250 Threonine/serine dehyd 55.2 2.4E+02 0.0052 28.5 13.8 114 314-471 194-315 (457)
220 PRK04148 hypothetical protein; 55.1 36 0.00078 28.6 5.7 42 21-71 6-47 (134)
221 PRK05636 replicative DNA helic 55.1 42 0.0009 35.4 7.5 42 37-78 267-309 (505)
222 PRK06732 phosphopantothenate-- 54.9 17 0.00037 33.8 4.2 37 36-72 1-49 (229)
223 PRK06988 putative formyltransf 54.8 63 0.0014 31.6 8.3 33 35-72 2-34 (312)
224 COG1066 Sms Predicted ATP-depe 54.7 72 0.0016 32.3 8.5 105 36-177 94-219 (456)
225 PRK02155 ppnK NAD(+)/NADH kina 54.3 67 0.0015 31.1 8.3 53 396-473 64-120 (291)
226 TIGR02852 spore_dpaB dipicolin 53.6 17 0.00038 32.5 3.8 39 37-75 2-40 (187)
227 PRK09739 hypothetical protein; 53.4 31 0.00066 31.2 5.6 39 33-71 1-42 (199)
228 TIGR01917 gly_red_sel_B glycin 53.3 26 0.00056 35.3 5.3 43 133-175 62-114 (431)
229 TIGR01918 various_sel_PB selen 53.3 26 0.00057 35.3 5.3 43 133-175 62-114 (431)
230 PF05159 Capsule_synth: Capsul 52.9 93 0.002 29.5 9.1 43 378-423 184-226 (269)
231 PRK09165 replicative DNA helic 52.8 73 0.0016 33.5 8.9 42 37-78 219-275 (497)
232 TIGR03878 thermo_KaiC_2 KaiC d 52.7 2.1E+02 0.0045 27.1 12.3 36 38-73 39-74 (259)
233 TIGR03600 phage_DnaB phage rep 52.6 1.3E+02 0.0029 30.8 10.7 42 37-78 196-238 (421)
234 PRK06067 flagellar accessory p 52.4 30 0.00064 32.2 5.5 41 37-77 27-67 (234)
235 PRK09620 hypothetical protein; 50.7 39 0.00084 31.4 5.8 37 36-72 4-52 (229)
236 PRK11823 DNA repair protein Ra 50.6 1.3E+02 0.0029 31.0 10.3 42 37-78 82-123 (446)
237 PF00731 AIRC: AIR carboxylase 50.4 1.6E+02 0.0036 25.2 9.5 138 317-491 3-148 (150)
238 TIGR01283 nifE nitrogenase mol 50.0 1.1E+02 0.0023 31.9 9.5 34 138-174 386-419 (456)
239 TIGR00416 sms DNA repair prote 49.9 39 0.00085 35.0 6.3 41 38-78 97-137 (454)
240 COG1484 DnaC DNA replication p 49.7 19 0.00041 34.1 3.7 47 35-81 105-151 (254)
241 TIGR02398 gluc_glyc_Psyn gluco 49.7 2.8E+02 0.006 29.1 12.4 115 378-513 363-483 (487)
242 TIGR00725 conserved hypothetic 49.6 74 0.0016 27.6 7.0 99 302-423 21-123 (159)
243 cd07035 TPP_PYR_POX_like Pyrim 49.3 1E+02 0.0023 26.2 8.1 27 396-422 60-92 (155)
244 PRK14478 nitrogenase molybdenu 49.1 97 0.0021 32.4 9.1 33 138-173 384-416 (475)
245 KOG1387 Glycosyltransferase [C 49.1 2.8E+02 0.0061 27.5 20.5 57 126-183 130-187 (465)
246 TIGR00347 bioD dethiobiotin sy 49.0 1.7E+02 0.0038 25.1 9.7 27 43-69 6-32 (166)
247 cd01124 KaiC KaiC is a circadi 48.9 45 0.00098 29.4 5.9 42 38-79 2-43 (187)
248 TIGR00665 DnaB replicative DNA 48.2 1.1E+02 0.0024 31.4 9.4 42 37-78 197-239 (434)
249 COG2159 Predicted metal-depend 48.1 88 0.0019 30.3 8.1 95 302-413 116-212 (293)
250 PLN02939 transferase, transfer 47.5 34 0.00073 38.7 5.5 41 33-73 479-525 (977)
251 cd00561 CobA_CobO_BtuR ATP:cor 47.0 1.9E+02 0.0042 25.1 10.8 34 37-70 4-37 (159)
252 COG2185 Sbm Methylmalonyl-CoA 46.8 33 0.00072 29.1 4.2 40 34-73 11-50 (143)
253 PRK10867 signal recognition pa 46.4 1.9E+02 0.004 29.9 10.4 41 37-77 102-143 (433)
254 KOG0853 Glycosyltransferase [C 46.4 28 0.00061 36.1 4.5 63 407-485 381-443 (495)
255 COG1797 CobB Cobyrinic acid a, 46.2 81 0.0018 32.1 7.4 31 37-67 2-33 (451)
256 TIGR03446 mycothiol_Mca mycoth 46.2 1.3E+02 0.0027 29.1 8.7 19 135-153 109-127 (283)
257 COG3195 Uncharacterized protei 45.6 1.3E+02 0.0028 26.2 7.4 76 406-490 88-164 (176)
258 PRK05986 cob(I)alamin adenolsy 45.5 2.3E+02 0.005 25.5 11.5 105 35-158 22-126 (191)
259 PLN03064 alpha,alpha-trehalose 45.5 2.9E+02 0.0063 31.6 12.4 110 382-513 445-562 (934)
260 PRK13768 GTPase; Provisional 45.5 69 0.0015 30.2 6.8 37 37-73 4-40 (253)
261 PLN02929 NADH kinase 45.4 26 0.00057 33.9 3.9 66 396-474 65-139 (301)
262 PRK07773 replicative DNA helic 45.1 1.3E+02 0.0027 34.4 9.8 42 37-78 219-261 (886)
263 TIGR00421 ubiX_pad polyprenyl 44.7 20 0.00043 31.9 2.8 42 37-79 1-42 (181)
264 TIGR03880 KaiC_arch_3 KaiC dom 44.6 77 0.0017 29.1 6.9 44 37-80 18-61 (224)
265 PRK07206 hypothetical protein; 44.6 83 0.0018 32.1 7.8 34 138-171 61-96 (416)
266 cd02070 corrinoid_protein_B12- 44.3 45 0.00097 30.2 5.1 40 35-74 82-121 (201)
267 TIGR00075 hypD hydrogenase exp 44.1 1.3E+02 0.0029 29.8 8.4 146 302-510 125-272 (369)
268 PRK05748 replicative DNA helic 43.8 1.8E+02 0.004 30.1 10.2 42 37-78 205-247 (448)
269 COG1663 LpxK Tetraacyldisaccha 43.7 1E+02 0.0022 30.3 7.6 34 40-73 54-87 (336)
270 TIGR00853 pts-lac PTS system, 43.6 61 0.0013 25.3 5.1 39 34-72 2-40 (95)
271 COG0052 RpsB Ribosomal protein 43.4 40 0.00086 31.4 4.5 30 148-177 157-188 (252)
272 TIGR03877 thermo_KaiC_1 KaiC d 43.2 2.7E+02 0.006 25.7 10.8 42 37-78 23-64 (237)
273 cd00532 MGS-like MGS-like doma 43.1 1.6E+02 0.0036 23.6 7.8 84 48-173 10-104 (112)
274 TIGR00639 PurN phosphoribosylg 43.1 2.5E+02 0.0054 25.2 10.4 40 137-176 69-109 (190)
275 cd07037 TPP_PYR_MenD Pyrimidin 43.0 86 0.0019 27.3 6.5 27 396-422 61-93 (162)
276 TIGR02700 flavo_MJ0208 archaeo 42.9 28 0.00061 32.5 3.6 44 37-80 1-46 (234)
277 PF01075 Glyco_transf_9: Glyco 42.9 75 0.0016 29.5 6.7 95 313-421 104-208 (247)
278 COG2861 Uncharacterized protei 42.8 2.6E+02 0.0057 26.0 9.5 34 140-173 141-178 (250)
279 COG1748 LYS9 Saccharopine dehy 42.6 1.4E+02 0.003 30.2 8.5 33 35-72 1-34 (389)
280 COG1763 MobB Molybdopterin-gua 42.4 47 0.001 28.9 4.6 39 35-73 1-40 (161)
281 COG1036 Archaeal flavoproteins 42.3 41 0.00088 29.0 4.0 46 33-79 6-54 (187)
282 cd01977 Nitrogenase_VFe_alpha 41.7 1.2E+02 0.0025 31.1 8.3 32 140-174 351-382 (415)
283 TIGR00173 menD 2-succinyl-5-en 41.5 1.3E+02 0.0027 31.1 8.5 26 396-421 64-95 (432)
284 cd01968 Nitrogenase_NifE_I Nit 41.2 1.7E+02 0.0037 29.8 9.4 34 138-174 347-380 (410)
285 PRK09302 circadian clock prote 41.0 57 0.0012 34.5 6.0 45 36-80 274-318 (509)
286 KOG0780 Signal recognition par 40.7 1.7E+02 0.0036 29.5 8.4 43 36-78 101-144 (483)
287 cd02071 MM_CoA_mut_B12_BD meth 40.6 44 0.00096 27.4 4.1 37 37-73 1-37 (122)
288 cd08783 Death_MALT1 Death doma 40.5 88 0.0019 24.3 5.2 67 425-515 20-86 (97)
289 PLN00016 RNA-binding protein; 40.1 35 0.00076 34.4 4.1 38 35-72 52-89 (378)
290 PF05728 UPF0227: Uncharacteri 39.8 59 0.0013 29.1 5.0 43 136-178 46-91 (187)
291 PRK06249 2-dehydropantoate 2-r 39.8 40 0.00086 33.0 4.4 35 34-73 4-38 (313)
292 cd01122 GP4d_helicase GP4d_hel 39.8 22 0.00047 33.9 2.4 42 37-78 32-74 (271)
293 PF01210 NAD_Gly3P_dh_N: NAD-d 39.8 24 0.00052 30.5 2.5 32 37-73 1-32 (157)
294 TIGR01007 eps_fam capsular exo 39.7 57 0.0012 29.4 5.1 38 36-73 17-56 (204)
295 PF02702 KdpD: Osmosensitive K 39.7 60 0.0013 29.4 4.9 40 35-74 5-44 (211)
296 PF02374 ArsA_ATPase: Anion-tr 39.6 44 0.00095 32.6 4.6 41 36-76 1-42 (305)
297 COG1440 CelA Phosphotransferas 39.6 65 0.0014 25.5 4.5 38 35-72 1-38 (102)
298 cd01715 ETF_alpha The electron 39.2 66 0.0014 28.1 5.3 42 136-177 72-116 (168)
299 PRK00207 sulfur transfer compl 39.0 70 0.0015 26.6 5.0 37 36-72 1-41 (128)
300 cd01976 Nitrogenase_MoFe_alpha 38.9 38 0.00083 34.7 4.2 36 137-175 359-394 (421)
301 TIGR02699 archaeo_AfpA archaeo 38.8 33 0.00071 30.3 3.1 42 37-79 1-44 (174)
302 TIGR02113 coaC_strep phosphopa 38.7 29 0.00063 30.8 2.9 42 37-79 2-43 (177)
303 PRK08155 acetolactate synthase 37.8 1.6E+02 0.0034 31.6 8.8 91 321-422 4-109 (564)
304 TIGR02370 pyl_corrinoid methyl 37.7 66 0.0014 29.1 5.1 44 35-78 84-127 (197)
305 PF02571 CbiJ: Precorrin-6x re 37.6 2.5E+02 0.0054 26.4 9.1 38 138-175 185-226 (249)
306 PRK00784 cobyric acid synthase 37.6 3.3E+02 0.0072 28.6 11.0 35 37-71 4-39 (488)
307 cd03466 Nitrogenase_NifN_2 Nit 37.4 53 0.0012 33.8 5.0 36 137-175 362-397 (429)
308 PRK13982 bifunctional SbtC-lik 37.3 48 0.001 34.4 4.6 40 34-73 255-306 (475)
309 CHL00072 chlL photochlorophyll 37.3 58 0.0013 31.5 5.0 38 36-73 1-38 (290)
310 PF02606 LpxK: Tetraacyldisacc 37.3 85 0.0019 30.9 6.2 36 38-73 40-75 (326)
311 PRK10499 PTS system N,N'-diace 37.2 76 0.0017 25.4 4.8 37 34-70 2-38 (106)
312 cd01141 TroA_d Periplasmic bin 36.9 57 0.0012 28.8 4.6 34 142-175 64-99 (186)
313 PF04464 Glyphos_transf: CDP-G 36.8 26 0.00056 35.2 2.6 116 376-510 251-367 (369)
314 cd01965 Nitrogenase_MoFe_beta_ 36.8 54 0.0012 33.7 5.0 37 137-176 361-397 (428)
315 PRK07004 replicative DNA helic 36.6 2.8E+02 0.006 28.9 10.1 41 38-78 216-257 (460)
316 PF03446 NAD_binding_2: NAD bi 36.5 41 0.0009 29.2 3.5 32 35-71 1-32 (163)
317 PRK08527 acetolactate synthase 36.4 86 0.0019 33.6 6.6 27 396-422 67-99 (563)
318 cd02032 Bchl_like This family 36.4 56 0.0012 31.0 4.7 37 36-72 1-37 (267)
319 KOG2825 Putative arsenite-tran 36.4 2.7E+02 0.0059 26.3 8.6 44 34-77 17-61 (323)
320 PRK12475 thiamine/molybdopteri 36.1 2.8E+02 0.0061 27.4 9.7 33 35-72 24-57 (338)
321 PF12038 DUF3524: Domain of un 36.1 1E+02 0.0022 27.0 5.6 34 36-72 1-35 (168)
322 cd01981 Pchlide_reductase_B Pc 36.1 55 0.0012 33.7 4.9 38 137-177 360-397 (430)
323 PRK00005 fmt methionyl-tRNA fo 35.9 3.8E+02 0.0083 26.1 10.5 31 36-71 1-31 (309)
324 COG0503 Apt Adenine/guanine ph 35.5 1E+02 0.0022 27.4 5.8 38 138-175 44-83 (179)
325 TIGR01281 DPOR_bchL light-inde 35.4 61 0.0013 30.7 4.8 35 36-70 1-35 (268)
326 PF08323 Glyco_transf_5: Starc 35.1 33 0.00073 32.2 2.9 27 47-73 17-43 (245)
327 PRK02910 light-independent pro 35.0 61 0.0013 34.3 5.0 37 137-176 352-388 (519)
328 CHL00076 chlB photochlorophyll 34.8 61 0.0013 34.2 5.0 37 137-176 364-400 (513)
329 TIGR01286 nifK nitrogenase mol 34.7 58 0.0013 34.4 4.8 36 138-176 428-463 (515)
330 PRK03767 NAD(P)H:quinone oxido 34.5 68 0.0015 29.0 4.7 38 35-72 1-40 (200)
331 PRK03372 ppnK inorganic polyph 34.5 56 0.0012 31.9 4.3 54 396-474 73-130 (306)
332 PRK04328 hypothetical protein; 34.4 3.9E+02 0.0085 25.0 12.6 43 37-79 25-67 (249)
333 TIGR01278 DPOR_BchB light-inde 34.4 61 0.0013 34.3 4.9 36 138-176 355-390 (511)
334 PRK09219 xanthine phosphoribos 34.1 1E+02 0.0022 27.7 5.6 40 137-176 40-81 (189)
335 PRK12825 fabG 3-ketoacyl-(acyl 34.0 84 0.0018 28.8 5.5 36 34-73 5-40 (249)
336 PF01012 ETF: Electron transfe 34.0 48 0.001 28.8 3.5 41 136-176 79-122 (164)
337 TIGR00959 ffh signal recogniti 34.0 3.4E+02 0.0074 27.9 10.0 41 37-77 101-142 (428)
338 COG0541 Ffh Signal recognition 33.8 3.4E+02 0.0074 27.8 9.6 45 34-78 99-143 (451)
339 PRK09590 celB cellobiose phosp 33.7 77 0.0017 25.3 4.3 36 36-71 2-37 (104)
340 COG2085 Predicted dinucleotide 33.6 67 0.0015 29.2 4.3 35 35-74 1-35 (211)
341 TIGR00750 lao LAO/AO transport 33.5 2.4E+02 0.0051 27.4 8.6 40 35-74 34-73 (300)
342 PRK05579 bifunctional phosphop 33.3 42 0.00091 34.1 3.4 46 34-80 5-50 (399)
343 PRK10964 ADP-heptose:LPS hepto 33.3 1.9E+02 0.0042 28.1 8.1 131 315-471 179-321 (322)
344 TIGR01285 nifN nitrogenase mol 33.1 69 0.0015 33.0 5.0 37 137-176 363-399 (432)
345 COG0409 HypD Hydrogenase matur 32.9 1.6E+02 0.0034 28.7 6.8 58 436-510 210-267 (364)
346 PRK04940 hypothetical protein; 32.7 1.1E+02 0.0024 27.2 5.5 31 147-177 60-91 (180)
347 COG0801 FolK 7,8-dihydro-6-hyd 32.7 85 0.0019 27.2 4.6 35 316-350 3-37 (160)
348 PF04244 DPRP: Deoxyribodipyri 32.6 44 0.00096 30.9 3.1 26 48-73 47-72 (224)
349 PF09001 DUF1890: Domain of un 32.6 29 0.00062 29.0 1.7 36 45-80 9-44 (139)
350 TIGR00110 ilvD dihydroxy-acid 32.5 5.8E+02 0.013 27.1 11.4 44 135-178 77-124 (535)
351 cd01974 Nitrogenase_MoFe_beta 32.3 78 0.0017 32.6 5.3 36 138-176 368-403 (435)
352 cd01985 ETF The electron trans 32.2 84 0.0018 27.7 4.9 41 136-176 80-123 (181)
353 PRK13185 chlL protochlorophyll 32.2 77 0.0017 30.1 4.9 34 38-71 5-38 (270)
354 TIGR00521 coaBC_dfp phosphopan 31.8 48 0.001 33.6 3.5 44 35-79 3-46 (390)
355 PF06180 CbiK: Cobalt chelatas 31.6 72 0.0016 30.3 4.4 39 314-352 1-42 (262)
356 COG4088 Predicted nucleotide k 31.5 61 0.0013 29.5 3.6 37 36-72 2-38 (261)
357 TIGR01380 glut_syn glutathione 31.4 70 0.0015 31.3 4.5 40 36-75 1-43 (312)
358 PRK06395 phosphoribosylamine-- 31.4 2.3E+02 0.005 29.2 8.5 32 35-71 2-33 (435)
359 COG2086 FixA Electron transfer 31.3 87 0.0019 29.7 4.9 41 136-176 100-146 (260)
360 PRK13604 luxD acyl transferase 31.2 92 0.002 30.3 5.2 35 35-69 36-70 (307)
361 PRK08125 bifunctional UDP-gluc 31.2 3E+02 0.0065 30.1 9.9 40 138-177 66-106 (660)
362 PRK06276 acetolactate synthase 31.0 1.2E+02 0.0027 32.6 6.7 27 396-422 64-96 (586)
363 PRK11269 glyoxylate carboligas 30.9 1.6E+02 0.0035 31.8 7.6 27 396-422 69-101 (591)
364 PRK10916 ADP-heptose:LPS hepto 30.9 2.3E+02 0.0051 27.9 8.3 97 313-421 179-286 (348)
365 PRK02649 ppnK inorganic polyph 30.8 70 0.0015 31.2 4.3 54 395-473 68-125 (305)
366 PRK00994 F420-dependent methyl 30.7 96 0.0021 28.7 4.7 42 138-179 51-98 (277)
367 PF06506 PrpR_N: Propionate ca 30.6 59 0.0013 28.7 3.5 32 392-424 31-62 (176)
368 PRK08229 2-dehydropantoate 2-r 30.5 57 0.0012 32.2 3.8 33 35-72 2-34 (341)
369 PRK08322 acetolactate synthase 30.4 1.6E+02 0.0035 31.3 7.5 27 396-422 64-96 (547)
370 PRK06456 acetolactate synthase 30.4 1.2E+02 0.0026 32.5 6.5 27 396-422 69-101 (572)
371 COG2109 BtuR ATP:corrinoid ade 30.3 4.1E+02 0.0088 23.9 10.2 102 38-158 31-133 (198)
372 PLN02293 adenine phosphoribosy 30.3 1.5E+02 0.0032 26.6 6.0 40 135-174 50-91 (187)
373 COG1255 Uncharacterized protei 30.2 3.1E+02 0.0066 22.4 7.2 22 51-72 24-45 (129)
374 TIGR02329 propionate_PrpR prop 30.1 4.3E+02 0.0092 28.1 10.3 120 46-178 36-173 (526)
375 cd02069 methionine_synthase_B1 30.0 93 0.002 28.5 4.8 45 34-78 87-131 (213)
376 cd02034 CooC The accessory pro 29.9 1.2E+02 0.0026 24.6 5.0 37 37-73 1-37 (116)
377 PRK11519 tyrosine kinase; Prov 29.8 2.4E+02 0.0052 31.3 8.8 45 34-78 524-570 (719)
378 PRK14569 D-alanyl-alanine synt 29.7 98 0.0021 29.9 5.2 38 34-71 2-43 (296)
379 cd02040 NifH NifH gene encodes 29.5 89 0.0019 29.5 4.9 36 37-72 3-38 (270)
380 TIGR02015 BchY chlorophyllide 29.4 71 0.0015 32.8 4.3 32 141-175 349-380 (422)
381 PRK08979 acetolactate synthase 29.1 1.3E+02 0.0029 32.2 6.6 27 396-422 68-100 (572)
382 TIGR01470 cysG_Nterm siroheme 29.0 4.4E+02 0.0095 23.9 11.5 148 313-490 9-163 (205)
383 PLN02948 phosphoribosylaminoim 29.0 6.6E+02 0.014 27.0 11.7 143 314-495 410-562 (577)
384 PF12695 Abhydrolase_5: Alpha/ 28.8 1.2E+02 0.0025 25.0 5.0 34 39-72 2-35 (145)
385 PRK06718 precorrin-2 dehydroge 28.7 2.7E+02 0.0059 25.1 7.6 148 313-490 10-163 (202)
386 PRK11064 wecC UDP-N-acetyl-D-m 28.6 76 0.0017 32.5 4.4 33 34-71 2-34 (415)
387 PRK13234 nifH nitrogenase redu 28.5 1E+02 0.0023 29.8 5.1 38 34-71 3-40 (295)
388 COG2099 CobK Precorrin-6x redu 28.4 3.5E+02 0.0076 25.5 8.1 101 52-174 117-228 (257)
389 PF02826 2-Hacid_dh_C: D-isome 28.4 1.5E+02 0.0033 26.0 5.8 107 313-468 36-143 (178)
390 PRK01231 ppnK inorganic polyph 28.3 85 0.0018 30.5 4.4 53 396-473 63-119 (295)
391 PRK09435 membrane ATPase/prote 28.3 2.1E+02 0.0046 28.3 7.2 43 34-76 55-97 (332)
392 PLN02240 UDP-glucose 4-epimera 28.1 91 0.002 30.8 4.8 33 35-71 5-37 (352)
393 PRK12448 dihydroxy-acid dehydr 28.1 6E+02 0.013 27.4 10.7 45 135-179 99-147 (615)
394 PRK00039 ruvC Holliday junctio 27.9 1.6E+02 0.0034 25.8 5.6 44 134-177 48-106 (164)
395 KOG3062 RNA polymerase II elon 27.6 1.3E+02 0.0027 27.9 4.9 37 35-71 1-38 (281)
396 PF02776 TPP_enzyme_N: Thiamin 27.5 1.4E+02 0.0031 26.0 5.5 28 396-423 65-98 (172)
397 KOG1344 Predicted histone deac 27.5 1.7E+02 0.0038 26.9 5.8 46 134-179 235-302 (324)
398 cd01714 ETF_beta The electron 27.4 1.1E+02 0.0023 27.8 4.7 38 136-173 97-140 (202)
399 COG1435 Tdk Thymidine kinase [ 27.3 4.7E+02 0.01 23.7 8.5 39 35-73 3-42 (201)
400 PRK03094 hypothetical protein; 27.3 56 0.0012 24.6 2.3 21 52-72 10-30 (80)
401 PRK06756 flavodoxin; Provision 27.2 1.1E+02 0.0024 25.9 4.5 37 35-71 1-38 (148)
402 COG0143 MetG Methionyl-tRNA sy 27.1 1E+02 0.0023 32.8 5.1 41 35-75 4-54 (558)
403 COG4394 Uncharacterized protei 26.9 70 0.0015 30.5 3.3 30 44-73 12-42 (370)
404 PRK08199 thiamine pyrophosphat 26.9 2.8E+02 0.0062 29.6 8.6 27 396-422 72-104 (557)
405 PRK13982 bifunctional SbtC-lik 26.9 71 0.0015 33.2 3.8 45 35-80 70-114 (475)
406 PRK13236 nitrogenase reductase 26.8 1.2E+02 0.0027 29.3 5.4 37 36-72 6-43 (296)
407 TIGR00708 cobA cob(I)alamin ad 26.8 4.5E+02 0.0096 23.2 10.6 33 37-69 7-39 (173)
408 PRK07282 acetolactate synthase 26.8 1.3E+02 0.0027 32.4 5.9 27 396-422 74-106 (566)
409 PRK04539 ppnK inorganic polyph 26.7 1.1E+02 0.0025 29.6 5.0 55 395-474 68-126 (296)
410 PRK13230 nitrogenase reductase 26.6 1.1E+02 0.0024 29.2 5.0 36 35-70 1-36 (279)
411 PRK06522 2-dehydropantoate 2-r 26.6 75 0.0016 30.6 3.8 31 36-71 1-31 (304)
412 COG2987 HutU Urocanate hydrata 26.5 90 0.002 31.7 4.2 41 380-420 466-508 (561)
413 PLN02935 Bifunctional NADH kin 26.4 66 0.0014 33.5 3.4 55 395-474 262-320 (508)
414 PRK00170 azoreductase; Reviewe 26.2 1.2E+02 0.0027 27.1 5.0 37 35-71 1-43 (201)
415 PRK07688 thiamine/molybdopteri 26.2 5.3E+02 0.012 25.5 9.7 34 34-72 23-57 (339)
416 cd01147 HemV-2 Metal binding p 26.0 1.1E+02 0.0023 28.7 4.7 36 142-177 69-107 (262)
417 PF00282 Pyridoxal_deC: Pyrido 26.0 1.1E+02 0.0024 30.8 4.9 70 396-471 104-190 (373)
418 COG2230 Cfa Cyclopropane fatty 25.9 52 0.0011 31.6 2.4 39 403-441 81-121 (283)
419 TIGR00118 acolac_lg acetolacta 25.9 2.3E+02 0.0049 30.3 7.7 27 396-422 65-97 (558)
420 cd03412 CbiK_N Anaerobic cobal 25.7 1.1E+02 0.0024 25.3 4.1 38 314-351 1-40 (127)
421 PF01924 HypD: Hydrogenase for 25.5 93 0.002 30.7 4.0 146 302-510 114-261 (355)
422 PF06506 PrpR_N: Propionate ca 25.5 92 0.002 27.5 3.8 33 144-179 122-154 (176)
423 TIGR01744 XPRTase xanthine pho 25.5 1.7E+02 0.0037 26.2 5.6 40 137-176 40-81 (191)
424 PRK11780 isoprenoid biosynthes 25.4 1.4E+02 0.0031 27.4 5.1 38 36-73 2-43 (217)
425 PRK13011 formyltetrahydrofolat 25.4 4.5E+02 0.0098 25.3 8.8 102 33-174 87-193 (286)
426 PRK00094 gpsA NAD(P)H-dependen 25.4 88 0.0019 30.5 4.1 33 35-72 1-33 (325)
427 PRK05632 phosphate acetyltrans 25.2 6.9E+02 0.015 27.6 11.3 35 37-71 4-39 (684)
428 PLN02924 thymidylate kinase 25.1 5.4E+02 0.012 23.6 10.1 37 36-72 17-53 (220)
429 PRK08266 hypothetical protein; 25.0 3.4E+02 0.0074 28.8 8.7 27 396-422 69-101 (542)
430 PRK06719 precorrin-2 dehydroge 24.9 1.1E+02 0.0023 26.5 4.1 33 35-72 13-45 (157)
431 PF06564 YhjQ: YhjQ protein; 24.9 1.4E+02 0.0029 28.1 4.9 36 36-71 2-38 (243)
432 COG0041 PurE Phosphoribosylcar 24.9 4.5E+02 0.0098 22.7 11.2 144 316-495 4-154 (162)
433 cd01983 Fer4_NifH The Fer4_Nif 24.8 1.6E+02 0.0035 21.9 4.8 33 38-70 2-34 (99)
434 PRK13810 orotate phosphoribosy 24.8 1.9E+02 0.004 25.9 5.6 39 138-176 64-104 (187)
435 PF02302 PTS_IIB: PTS system, 24.5 1.2E+02 0.0027 22.9 4.0 36 37-72 1-37 (90)
436 PF03698 UPF0180: Uncharacteri 24.5 65 0.0014 24.3 2.2 22 52-73 10-31 (80)
437 PF07015 VirC1: VirC1 protein; 24.4 1.6E+02 0.0034 27.4 5.1 41 38-78 4-45 (231)
438 PRK01372 ddl D-alanine--D-alan 24.4 1.3E+02 0.0027 29.2 4.9 37 36-72 5-45 (304)
439 PRK13054 lipid kinase; Reviewe 24.4 1.6E+02 0.0035 28.5 5.6 39 35-73 3-41 (300)
440 cd01143 YvrC Periplasmic bindi 24.1 1.3E+02 0.0028 26.6 4.6 34 143-176 56-90 (195)
441 TIGR01501 MthylAspMutase methy 24.1 1.5E+02 0.0032 24.9 4.5 43 36-78 2-44 (134)
442 PF13450 NAD_binding_8: NAD(P) 24.1 92 0.002 22.4 3.0 22 52-73 8-29 (68)
443 PRK05784 phosphoribosylamine-- 24.1 3.7E+02 0.0081 28.2 8.5 31 36-71 1-33 (486)
444 PRK04885 ppnK inorganic polyph 23.9 52 0.0011 31.3 2.0 28 396-423 36-69 (265)
445 PHA02754 hypothetical protein; 23.9 1.5E+02 0.0033 20.5 3.6 22 466-490 7-28 (67)
446 PF05225 HTH_psq: helix-turn-h 23.8 1.2E+02 0.0026 19.9 3.1 26 458-485 1-26 (45)
447 PRK12815 carB carbamoyl phosph 23.8 6.6E+02 0.014 29.5 11.2 39 34-72 6-50 (1068)
448 PRK14618 NAD(P)H-dependent gly 23.8 1.1E+02 0.0024 30.0 4.5 33 35-72 4-36 (328)
449 PRK07586 hypothetical protein; 23.7 2.5E+02 0.0053 29.7 7.3 26 397-422 66-97 (514)
450 PRK07979 acetolactate synthase 23.7 1.9E+02 0.0041 31.1 6.5 27 396-422 68-100 (574)
451 PF14626 RNase_Zc3h12a_2: Zc3h 23.7 77 0.0017 25.8 2.6 31 49-79 9-39 (122)
452 PF01497 Peripla_BP_2: Peripla 23.7 98 0.0021 28.4 3.9 37 142-178 55-93 (238)
453 PRK00885 phosphoribosylamine-- 23.3 2.8E+02 0.0061 28.3 7.5 29 36-69 1-30 (420)
454 PRK13235 nifH nitrogenase redu 23.2 1.3E+02 0.0029 28.5 4.8 33 37-69 3-35 (274)
455 PRK06882 acetolactate synthase 23.1 2.8E+02 0.0062 29.7 7.8 27 396-422 68-100 (574)
456 cd02065 B12-binding_like B12 b 22.9 1.4E+02 0.0031 24.0 4.4 37 38-74 2-38 (125)
457 cd00861 ProRS_anticodon_short 22.9 1.5E+02 0.0032 22.5 4.2 34 37-70 3-38 (94)
458 KOG4061 DMQ mono-oxygenase/Ubi 22.8 2.1E+02 0.0045 25.2 5.1 83 384-482 67-157 (217)
459 TIGR02114 coaB_strep phosphopa 22.7 93 0.002 28.8 3.4 21 51-71 27-47 (227)
460 COG0504 PyrG CTP synthase (UTP 22.7 1.5E+02 0.0032 30.7 5.0 42 36-77 1-45 (533)
461 PF06418 CTP_synth_N: CTP synt 22.6 1E+02 0.0022 29.2 3.6 41 36-76 1-44 (276)
462 PRK12921 2-dehydropantoate 2-r 22.5 98 0.0021 29.9 3.8 31 36-71 1-31 (305)
463 PRK05246 glutathione synthetas 22.4 1.2E+02 0.0027 29.6 4.5 40 36-75 2-44 (316)
464 PF10093 DUF2331: Uncharacteri 22.4 2.3E+02 0.0049 28.5 6.1 83 323-419 188-286 (374)
465 PTZ00119 40S ribosomal protein 22.4 1.7E+02 0.0037 27.7 4.9 60 456-515 81-143 (302)
466 PRK03378 ppnK inorganic polyph 22.2 84 0.0018 30.4 3.1 55 395-474 63-121 (292)
467 PRK13011 formyltetrahydrofolat 22.1 7.1E+02 0.015 24.0 10.2 114 333-486 155-271 (286)
468 PRK11199 tyrA bifunctional cho 22.1 8.1E+02 0.018 24.6 10.7 33 35-72 98-131 (374)
469 PRK01185 ppnK inorganic polyph 22.1 1.3E+02 0.0027 28.8 4.2 53 396-473 53-106 (271)
470 TIGR02663 nifX nitrogen fixati 22.1 2.5E+02 0.0055 22.8 5.6 59 404-474 53-111 (119)
471 TIGR02195 heptsyl_trn_II lipop 22.0 7.4E+02 0.016 24.1 10.3 99 37-177 176-279 (334)
472 cd05565 PTS_IIB_lactose PTS_II 21.9 2.2E+02 0.0049 22.4 4.9 37 36-72 1-37 (99)
473 PRK06835 DNA replication prote 21.9 85 0.0018 31.0 3.1 43 36-78 184-226 (329)
474 TIGR02482 PFKA_ATP 6-phosphofr 21.9 71 0.0015 31.1 2.6 38 390-427 86-127 (301)
475 CHL00194 ycf39 Ycf39; Provisio 21.9 1.6E+02 0.0034 28.7 5.1 33 36-72 1-33 (317)
476 COG2084 MmsB 3-hydroxyisobutyr 21.8 1.2E+02 0.0026 29.2 4.0 33 36-73 1-33 (286)
477 PRK06466 acetolactate synthase 21.7 2.1E+02 0.0046 30.7 6.5 27 396-422 68-100 (574)
478 PF00070 Pyr_redox: Pyridine n 21.6 1.3E+02 0.0027 22.3 3.4 25 50-74 9-33 (80)
479 PRK04761 ppnK inorganic polyph 21.6 62 0.0013 30.4 2.0 28 396-423 26-57 (246)
480 TIGR01284 alt_nitrog_alph nitr 21.6 89 0.0019 32.5 3.4 34 138-174 386-419 (457)
481 PRK06965 acetolactate synthase 21.5 2.7E+02 0.0059 30.0 7.2 27 396-422 85-117 (587)
482 PRK08335 translation initiatio 21.5 2E+02 0.0044 27.5 5.5 61 8-73 109-170 (275)
483 PRK07449 2-succinyl-5-enolpyru 21.3 2.5E+02 0.0054 30.1 6.9 80 332-422 12-105 (568)
484 PRK08939 primosomal protein Dn 21.3 86 0.0019 30.6 3.0 44 36-79 157-200 (306)
485 PLN02735 carbamoyl-phosphate s 21.3 5.8E+02 0.013 30.0 10.1 39 35-73 23-67 (1102)
486 TIGR01862 N2-ase-Ialpha nitrog 21.2 1E+02 0.0023 31.8 3.8 34 138-174 378-411 (443)
487 PRK06932 glycerate dehydrogena 21.2 3.8E+02 0.0082 26.2 7.5 62 313-406 147-208 (314)
488 PF08006 DUF1700: Protein of u 20.9 3.1E+02 0.0066 24.2 6.3 47 459-505 3-49 (181)
489 PRK08558 adenine phosphoribosy 20.9 2.2E+02 0.0047 26.7 5.5 36 139-174 103-140 (238)
490 PRK05993 short chain dehydroge 20.9 1.7E+02 0.0037 27.7 5.1 35 35-72 3-37 (277)
491 TIGR00313 cobQ cobyric acid sy 20.8 9.7E+02 0.021 25.0 11.8 28 45-72 9-36 (475)
492 PRK06703 flavodoxin; Provision 20.8 1.6E+02 0.0036 24.9 4.4 38 35-72 1-39 (151)
493 PRK10490 sensor protein KdpD; 20.7 1.4E+02 0.0031 34.0 5.1 41 34-74 23-63 (895)
494 PRK08293 3-hydroxybutyryl-CoA 20.6 1.2E+02 0.0026 29.2 3.9 33 35-72 3-35 (287)
495 PRK02645 ppnK inorganic polyph 20.6 1.7E+02 0.0036 28.6 4.8 39 33-71 1-40 (305)
496 PRK06646 DNA polymerase III su 20.6 1.9E+02 0.0041 25.0 4.6 39 35-73 1-39 (154)
497 TIGR01279 DPOR_bchN light-inde 20.6 4E+02 0.0086 27.2 7.8 35 35-74 274-308 (407)
498 PRK10818 cell division inhibit 20.5 1.5E+02 0.0033 28.0 4.6 39 35-73 1-41 (270)
499 TIGR01282 nifD nitrogenase mol 20.5 68 0.0015 33.4 2.2 36 137-175 394-429 (466)
500 TIGR01012 Sa_S2_E_A ribosomal 20.4 1.5E+02 0.0032 26.8 4.0 32 146-177 107-140 (196)
No 1
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=2.6e-66 Score=527.62 Aligned_cols=471 Identities=48% Similarity=0.884 Sum_probs=355.8
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCcc
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENL 113 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~ 113 (518)
++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+..........+..++|+.+|+|...+++|.+.+..
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~ 86 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENL 86 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcccc
Confidence 35799999999999999999999999999999999999987665554322111112248999999886556787765443
Q ss_pred ccccchhhhhhHHHHHHHHHhhHHHHHHHHhh--CCCCEEEecCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhhhc
Q 010093 114 DAITNEVNKGLIVKFFGATMKLQEPLEQLLQE--HKPDCLVADTFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALY 191 (518)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~~~~~~~~~~~~~ 191 (518)
...+.. ..+..+......+.+.+.+++++ .++|+||+|.++.|+..+|+++|||.+.|++++++....+..+...
T Consensus 87 ~~~~~~---~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~ 163 (491)
T PLN02534 87 DTLPSR---DLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLH 163 (491)
T ss_pred ccCCcH---HHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHh
Confidence 322221 34445555666677788888875 4689999999999999999999999999999988887765443322
Q ss_pred CCCCCCCCCCCccccCCCCCCccccCCCCCcccccCCCCchHHHHHHHhhhhcccccEEEEcCccccchHHHHHHHHhhC
Q 010093 192 EPHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRKALG 271 (518)
Q Consensus 192 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~L~~~~~~~~~~~~~ 271 (518)
...........++.+|+++....+...+++.. +........+...+......++++++|||.+||+.+++.+...++
T Consensus 164 ~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~---~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~ 240 (491)
T PLN02534 164 NAHLSVSSDSEPFVVPGMPQSIEITRAQLPGA---FVSLPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIK 240 (491)
T ss_pred cccccCCCCCceeecCCCCccccccHHHCChh---hcCcccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcC
Confidence 22111222234456788876444566666654 211112333444443334457799999999999999999987777
Q ss_pred CcEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEc
Q 010093 272 RRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEASGRNFIWVVS 351 (518)
Q Consensus 272 ~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~~~~~~i~~~~ 351 (518)
++++.|||+............++......+++|..||+.+++++||||||||......+++.+++.+|+.++++|||++.
T Consensus 241 ~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r 320 (491)
T PLN02534 241 KKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIK 320 (491)
T ss_pred CcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence 78999999975321100000011111112457999999998889999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCC-CCCChhHHHHHhcCCCcEeecCccHHHhhccCCCcccccccCchhHHHHHHhCCceecCCcccccchh
Q 010093 352 KNKNDGGEGGN-EDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYN 430 (518)
Q Consensus 352 ~~~~~~~~~~~-~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~n 430 (518)
... ..++. ...+|++|..+.++.|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.|
T Consensus 321 ~~~---~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~n 397 (491)
T PLN02534 321 TGE---KHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLN 397 (491)
T ss_pred cCc---cccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHH
Confidence 432 01111 11268899877778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcceeecccc---ccccc--cCccChHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 010093 431 EKMVNEILKIGVGVGIQK---WCRIV--GDFVKRETIEKAVNEIMV--GDRAEEMRSRAKALGKMAKRAVENGGSSYSDL 503 (518)
Q Consensus 431 a~~v~e~~G~G~~l~~~~---~~~~~--~~~~~~~~l~~av~~ll~--~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~ 503 (518)
|+++++.+|+|+.+.... |+.++ +...++++|.++|+++|. |++++++|+||++|++++++|+.+||||+.++
T Consensus 398 a~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl 477 (491)
T PLN02534 398 EKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINL 477 (491)
T ss_pred HHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 999988999999885321 11111 114799999999999996 45678999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 010093 504 SALIEELRLS 513 (518)
Q Consensus 504 ~~~~~~~~~~ 513 (518)
++||+++..+
T Consensus 478 ~~fv~~i~~~ 487 (491)
T PLN02534 478 SILIQDVLKQ 487 (491)
T ss_pred HHHHHHHHHH
Confidence 9999999743
No 2
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.2e-64 Score=521.38 Aligned_cols=472 Identities=60% Similarity=1.090 Sum_probs=347.3
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhh--ccCCCeEEEEeeCCCccCCCCCCCC
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERAN--ELGIEMDVKTIKFPSVEAGLPEGCE 111 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~--~~g~~i~~~~ip~~~~~~~l~~~~~ 111 (518)
+++||+|+|+|+.||++|++.||+.|+.|||+|||++++.+...+++...... ..+..+.+..+++|...++++.+.+
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e 83 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCE 83 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcc
Confidence 67899999999999999999999999999999999999988766654322110 1122356777777754446666544
Q ss_pred cccccc---chhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhh
Q 010093 112 NLDAIT---NEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCL 188 (518)
Q Consensus 112 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~~~~~~~~~~ 188 (518)
.....+ .......+..+......+.+.+.+++++.+||+||+|.++.|+..+|+++|||.+.+++++++....+..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~~~ 163 (482)
T PLN03007 84 NVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASYCI 163 (482)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHHHH
Confidence 332110 00000233344455566778888888888899999999999999999999999999999888777665544
Q ss_pred hhcCCCCCCCCCCCccccCCCCCCccccCCCCCcccccCCCCchHHHHHHHhhhhcccccEEEEcCccccchHHHHHHHH
Q 010093 189 ALYEPHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRK 268 (518)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~L~~~~~~~~~~ 268 (518)
....+.........+..+|+++..+.+...+++.. .....+..+.........+.+++++|++.+|++++.+.++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~~~ 239 (482)
T PLN03007 164 RVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDA----DEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFYKS 239 (482)
T ss_pred HhcccccccCCCCceeeCCCCCCccccCHHhcCCC----CCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHHHh
Confidence 32222111111112234677764333333333321 11112344444555566788899999999999998888877
Q ss_pred hhCCcEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEE
Q 010093 269 ALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEASGRNFIW 348 (518)
Q Consensus 269 ~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~~~~~~i~ 348 (518)
....++++|||+............++...+..+.+|.+|++.+++++||||||||+...+.+.+.+++.+|+.++++|||
T Consensus 240 ~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw 319 (482)
T PLN03007 240 FVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIW 319 (482)
T ss_pred ccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEE
Confidence 66668999999865322110000011111223578999999998899999999999888899999999999999999999
Q ss_pred EEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhccCCCcccccccCchhHHHHHHhCCceecCCcccccc
Q 010093 349 VVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQF 428 (518)
Q Consensus 349 ~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~ 428 (518)
+++... +..+....+|++|.++..+.|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|+++||+
T Consensus 320 ~~~~~~---~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~ 396 (482)
T PLN03007 320 VVRKNE---NQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQF 396 (482)
T ss_pred EEecCC---cccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhh
Confidence 998643 11111123899999888899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 010093 429 YNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIE 508 (518)
Q Consensus 429 ~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 508 (518)
.||+++++.+++|+.+...+....+.+.+++++|.++|+++|.+++.++||++|+++++++++|+.+||||+.++++||+
T Consensus 397 ~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l~~~v~ 476 (482)
T PLN03007 397 YNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFNDLNKFME 476 (482)
T ss_pred hhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 99998865567776653210000011368999999999999984445699999999999999999999999999999999
Q ss_pred HHHh
Q 010093 509 ELRL 512 (518)
Q Consensus 509 ~~~~ 512 (518)
++.+
T Consensus 477 ~~~~ 480 (482)
T PLN03007 477 ELNS 480 (482)
T ss_pred HHHh
Confidence 9875
No 3
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.3e-64 Score=514.62 Aligned_cols=460 Identities=33% Similarity=0.603 Sum_probs=348.7
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCcc
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENL 113 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~ 113 (518)
++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+..... ....++++.+|+|.. .+++.+.+..
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~----~~~~i~~~~lp~P~~-~~lPdG~~~~ 82 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS----KHPSIETLVLPFPSH-PSIPSGVENV 82 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc----cCCCeeEEeCCCCCc-CCCCCCCcCh
Confidence 56899999999999999999999999999999999999988766644311 112578888887753 4677776544
Q ss_pred ccccchhhhhhHHHHHHHHHhhHHHHHHHHhh--CCCCEEEecCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhhhc
Q 010093 114 DAITNEVNKGLIVKFFGATMKLQEPLEQLLQE--HKPDCLVADTFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALY 191 (518)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~~~~~~~~~~~~~ 191 (518)
...+. ..+..+......+.+.+.+++++ .++++||+|.++.|+..+|+++|||++.|+++++..++.+.++...
T Consensus 83 ~~~~~----~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~ 158 (477)
T PLN02863 83 KDLPP----SGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWRE 158 (477)
T ss_pred hhcch----hhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhc
Confidence 33221 33444555666667777777775 4679999999999999999999999999999999999888776432
Q ss_pred CCCCC-CCCCCCc---cccCCCCCCccccCCCCCcccccCCCCchHHHHHHHhhhhcccccEEEEcCccccchHHHHHHH
Q 010093 192 EPHKK-VSSDSEP---FVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYR 267 (518)
Q Consensus 192 ~~~~~-~~~~~~~---~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~L~~~~~~~~~ 267 (518)
.+... ......+ ..+|+++. +..++++.++.-............+.......++++++|||++||+.++++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~ 235 (477)
T PLN02863 159 MPTKINPDDQNEILSFSKIPNCPK---YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLK 235 (477)
T ss_pred ccccccccccccccccCCCCCCCC---cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHH
Confidence 22111 0111111 23566654 55566665421000111222233333334456788999999999999999998
Q ss_pred HhhC-CcEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHhCCCcE
Q 010093 268 KALG-RRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEASGRNF 346 (518)
Q Consensus 268 ~~~~-~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~~~~~~ 346 (518)
..++ ++++.|||+............++...+..+++|..||+.+++++||||||||+...+.+++.+++.+|+.++++|
T Consensus 236 ~~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~f 315 (477)
T PLN02863 236 KELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHF 315 (477)
T ss_pred hhcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcE
Confidence 7665 689999999753210000000011111135689999999988899999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhccCCCcccccccCchhHHHHHHhCCceecCCcccc
Q 010093 347 IWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAE 426 (518)
Q Consensus 347 i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~D 426 (518)
||+++... +.+.....+|++|..+....|+++.+|+||.+||+|++|++||||||+||++||+++|||||++|+++|
T Consensus 316 lw~~~~~~---~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~D 392 (477)
T PLN02863 316 IWCVKEPV---NEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAAD 392 (477)
T ss_pred EEEECCCc---ccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCcccc
Confidence 99997532 111111138889988888889999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 010093 427 QFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSAL 506 (518)
Q Consensus 427 Q~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 506 (518)
|+.||+++++++|+|+.+... ..+..+.+++.++|++++. ++++||+||+++++++++|+.+|||++.++++|
T Consensus 393 Q~~na~~v~~~~gvG~~~~~~-----~~~~~~~~~v~~~v~~~m~--~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~ 465 (477)
T PLN02863 393 QFVNASLLVDELKVAVRVCEG-----ADTVPDSDELARVFMESVS--ENQVERERAKELRRAALDAIKERGSSVKDLDGF 465 (477)
T ss_pred chhhHHHHHHhhceeEEeccC-----CCCCcCHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 999999986678999999542 0124689999999999993 267999999999999999999999999999999
Q ss_pred HHHHHhhhc
Q 010093 507 IEELRLSRH 515 (518)
Q Consensus 507 ~~~~~~~~~ 515 (518)
|+.+.+..-
T Consensus 466 v~~i~~~~~ 474 (477)
T PLN02863 466 VKHVVELGL 474 (477)
T ss_pred HHHHHHhcc
Confidence 999987654
No 4
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=6.2e-63 Score=500.86 Aligned_cols=441 Identities=29% Similarity=0.480 Sum_probs=334.7
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCc
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFA-TRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCEN 112 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~-~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~ 112 (518)
.+.||+++|+|++||++|++.||+.|+ .+|+.|||++++.+...+..... ....+++..+|++.. .+++....
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~----~~~~i~~~~lp~p~~-~glp~~~~- 77 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL----NSTGVDIVGLPSPDI-SGLVDPSA- 77 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc----cCCCceEEECCCccc-cCCCCCCc-
Confidence 357999999999999999999999998 78999999999987654432211 112488888886543 24431110
Q ss_pred cccccchhhhhhHHHHHHHHHhhHHHHHHHHhh--CCCCEEEecCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhhh
Q 010093 113 LDAITNEVNKGLIVKFFGATMKLQEPLEQLLQE--HKPDCLVADTFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLAL 190 (518)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~~~~~~~~~~~~ 190 (518)
.....+......+.+.+++++++ .+|++||+|.++.|+..+|+++|||++.++++++..++.+.+.+.
T Consensus 78 ----------~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~ 147 (481)
T PLN02992 78 ----------HVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPT 147 (481)
T ss_pred ----------cHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhh
Confidence 11112222333455666676665 478999999999999999999999999999999888766555432
Q ss_pred c-CCCCC-CCCCCCccccCCCCCCccccCCCCCcccccCCCCchHHHHHHHhhhhcccccEEEEcCccccchHHHHHHHH
Q 010093 191 Y-EPHKK-VSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRK 268 (518)
Q Consensus 191 ~-~~~~~-~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~L~~~~~~~~~~ 268 (518)
. .+... ...+..+..+|+++. +...+++... ..........+.+.......++++++|||.+||+.++++++.
T Consensus 148 ~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~--~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~ 222 (481)
T PLN02992 148 LDKDIKEEHTVQRKPLAMPGCEP---VRFEDTLDAY--LVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQD 222 (481)
T ss_pred hccccccccccCCCCcccCCCCc---cCHHHhhHhh--cCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhh
Confidence 1 11110 001112345777765 4555666421 111212223333444556788999999999999999998864
Q ss_pred h--h----CCcEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHhC
Q 010093 269 A--L----GRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEAS 342 (518)
Q Consensus 269 ~--~----~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~~ 342 (518)
. + .++++.|||+...... ...+++|.+||+.+++++||||||||...++.+++.+++.+|+.+
T Consensus 223 ~~~~~~~~~~~v~~VGPl~~~~~~-----------~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s 291 (481)
T PLN02992 223 PKLLGRVARVPVYPIGPLCRPIQS-----------SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMS 291 (481)
T ss_pred ccccccccCCceEEecCccCCcCC-----------CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHc
Confidence 2 1 2579999999753210 113567999999998889999999999999999999999999999
Q ss_pred CCcEEEEEcCCCCCCC-------------CCCCCCCChhHHHHHhcCCCcEeecCccHHHhhccCCCcccccccCchhHH
Q 010093 343 GRNFIWVVSKNKNDGG-------------EGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTL 409 (518)
Q Consensus 343 ~~~~i~~~~~~~~~~~-------------~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~ 409 (518)
+++|||++.... +++ .++..+.+|++|.++.+..|+++.+|+||.+||+|+++++||||||+||++
T Consensus 292 ~~~flW~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~ 370 (481)
T PLN02992 292 QQRFVWVVRPPV-DGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTL 370 (481)
T ss_pred CCCEEEEEeCCc-ccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHH
Confidence 999999996321 000 011223489999999999999999999999999999999999999999999
Q ss_pred HHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010093 410 EAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMA 489 (518)
Q Consensus 410 eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~ 489 (518)
||+++|||||++|+++||+.||+++++++|+|+.++.. ++.++.++|.++|+++|.+++++++|++|+++++++
T Consensus 371 Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~------~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a 444 (481)
T PLN02992 371 ESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDP------KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTA 444 (481)
T ss_pred HHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCC------CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999995589999999753 125899999999999998666679999999999999
Q ss_pred HHHHh--cCCCcHHHHHHHHHHHHhh
Q 010093 490 KRAVE--NGGSSYSDLSALIEELRLS 513 (518)
Q Consensus 490 ~~~~~--~~g~~~~~~~~~~~~~~~~ 513 (518)
++|+. +||||+.++++||+++..+
T Consensus 445 ~~Av~~~~GGSS~~~l~~~v~~~~~~ 470 (481)
T PLN02992 445 EMSLSIDGGGVAHESLCRVTKECQRF 470 (481)
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHHH
Confidence 99994 6999999999999998754
No 5
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=8.8e-63 Score=499.57 Aligned_cols=437 Identities=29% Similarity=0.470 Sum_probs=324.5
Q ss_pred CCCCCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCC
Q 010093 29 MGSEIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPE 108 (518)
Q Consensus 29 m~~~~~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~ 108 (518)
|+...++.||+++|++++||++|++.||+.|+.+|+.|||++++.+... .. ....++++..+| +++|.
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~-----~~~~~i~~~~ip-----~glp~ 68 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS-----DDFTDFQFVTIP-----ESLPE 68 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc-----cCCCCeEEEeCC-----CCCCc
Confidence 4544567899999999999999999999999999999999999876421 11 011247777775 24554
Q ss_pred C-CCccccccchhhhhhHHHHHHHHHhhHHHHHHHHhh------CCCCEEEecCCCccHHHHHHHcCCCeEEEecchHHH
Q 010093 109 G-CENLDAITNEVNKGLIVKFFGATMKLQEPLEQLLQE------HKPDCLVADTFFPWATDAAAKFGIPRLVFHGTSFFS 181 (518)
Q Consensus 109 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~------~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~~~ 181 (518)
+ .+.. ... ..+..+ ...+.+.+.+++++ .++++||+|.++.|+..+|+++|||++.++++++..
T Consensus 69 ~~~~~~---~~~---~~~~~~---~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~ 139 (451)
T PLN02410 69 SDFKNL---GPI---EFLHKL---NKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATA 139 (451)
T ss_pred cccccc---CHH---HHHHHH---HHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHH
Confidence 2 1111 111 222222 22233334443332 357999999999999999999999999999999988
Q ss_pred HHHHhhhhhcC------CCCCCCCCCCccccCCCCCCccccCCCCCcccccCCCCchHHHHHHHhhhhcccccEEEEcCc
Q 010093 182 LCASNCLALYE------PHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSF 255 (518)
Q Consensus 182 ~~~~~~~~~~~------~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~ 255 (518)
+..+.++.... +..... ...+..+|+++. +..++++... ..........+.... ....++++++|||
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iPg~~~---~~~~dlp~~~--~~~~~~~~~~~~~~~-~~~~~~~vlvNTf 212 (451)
T PLN02410 140 FVCRSVFDKLYANNVLAPLKEPK-GQQNELVPEFHP---LRCKDFPVSH--WASLESIMELYRNTV-DKRTASSVIINTA 212 (451)
T ss_pred HHHHHHHHHHHhccCCCCccccc-cCccccCCCCCC---CChHHCcchh--cCCcHHHHHHHHHHh-hcccCCEEEEeCh
Confidence 87766543211 111110 112335677765 4445555431 011111222222222 3467889999999
Q ss_pred cccchHHHHHHHHhhCCcEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHH
Q 010093 256 YELEPAYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEI 335 (518)
Q Consensus 256 ~~L~~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l 335 (518)
++||+.+++++....+++++.|||++...... ...+..+.+|.+||+++++++||||||||...++.+++.++
T Consensus 213 ~eLE~~~~~~l~~~~~~~v~~vGpl~~~~~~~-------~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~el 285 (451)
T PLN02410 213 SCLESSSLSRLQQQLQIPVYPIGPLHLVASAP-------TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMET 285 (451)
T ss_pred HHhhHHHHHHHHhccCCCEEEecccccccCCC-------ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHH
Confidence 99999999999876667999999997542110 00011235689999999888999999999999999999999
Q ss_pred HHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhccCCCcccccccCchhHHHHHHhC
Q 010093 336 ATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAG 415 (518)
Q Consensus 336 ~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~G 415 (518)
+.+|+.++++|||++..... +.++..+.+|++|.++. .+|..+++|+||.+||+|+++++||||||+||++||+++|
T Consensus 286 a~gLe~s~~~FlWv~r~~~~--~~~~~~~~lp~~f~er~-~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~G 362 (451)
T PLN02410 286 ASGLDSSNQQFLWVIRPGSV--RGSEWIESLPKEFSKII-SGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEG 362 (451)
T ss_pred HHHHHhcCCCeEEEEccCcc--cccchhhcCChhHHHhc-cCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcC
Confidence 99999999999999974310 01121123799998876 4667888999999999999999999999999999999999
Q ss_pred CceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhc
Q 010093 416 VPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVEN 495 (518)
Q Consensus 416 vP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~ 495 (518)
||||++|+++||+.||+++++.+|+|+.+. . .+++++|.++|+++|.++++++||++|+++++++++|+.+
T Consensus 363 vP~l~~P~~~DQ~~na~~~~~~~~~G~~~~-~--------~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~ 433 (451)
T PLN02410 363 VPMICKPFSSDQKVNARYLECVWKIGIQVE-G--------DLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVIS 433 (451)
T ss_pred CCEEeccccccCHHHHHHHHHHhCeeEEeC-C--------cccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999965559999996 3 6899999999999997444679999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHh
Q 010093 496 GGSSYSDLSALIEELRL 512 (518)
Q Consensus 496 ~g~~~~~~~~~~~~~~~ 512 (518)
|||++.++++||+.+..
T Consensus 434 gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 434 GGSSHNSLEEFVHFMRT 450 (451)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998864
No 6
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=6.2e-63 Score=499.42 Aligned_cols=435 Identities=23% Similarity=0.406 Sum_probs=332.1
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCcc
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENL 113 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~ 113 (518)
++.||+++|+|+.||++|++.||+.|+.+||+|||++++.+...+.+... .+..+++..++++.. ++++.+.+..
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a----~~~~i~~~~l~~p~~-dgLp~g~~~~ 77 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNL----FPDSIVFHPLTIPPV-NGLPAGAETT 77 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccC----CCCceEEEEeCCCCc-cCCCCCcccc
Confidence 36899999999999999999999999999999999999887766544310 112467887776532 3666654422
Q ss_pred ccccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhhhcCC
Q 010093 114 DAITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALYEP 193 (518)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 193 (518)
..... .....+....+.+.+.+++++++.++|+||+| ++.|+..+|.++|||++.++++++..+. +.+...
T Consensus 78 ~~l~~----~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~--- 148 (442)
T PLN02208 78 SDIPI----SMDNLLSEALDLTRDQVEAAVRALRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG--- 148 (442)
T ss_pred cchhH----HHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc---
Confidence 11110 22233445566778888998888899999999 6789999999999999999999887553 333221
Q ss_pred CCCCCCCCCccccCCCCCC-ccccCCCCCcccccCCCCchHHHHHHHhhhhcccccEEEEcCccccchHHHHHHHHhhCC
Q 010093 194 HKKVSSDSEPFVMPHFPGE-IKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRKALGR 272 (518)
Q Consensus 194 ~~~~~~~~~~~~~p~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~L~~~~~~~~~~~~~~ 272 (518)
.... ..+|+++.. +.+...+++.+ ......+..+..++......++++++|||.+||+.+.+++.+.+++
T Consensus 149 -~~~~-----~~~pglp~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~ 219 (442)
T PLN02208 149 -GKLG-----VPPPGYPSSKVLFRENDAHAL---ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHK 219 (442)
T ss_pred -cccC-----CCCCCCCCcccccCHHHcCcc---cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCC
Confidence 1111 124677642 23444455532 1111123334444444566789999999999999999999888778
Q ss_pred cEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcC
Q 010093 273 RAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEASGRNFIWVVSK 352 (518)
Q Consensus 273 ~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~ 352 (518)
+++.|||++..... ....++++.+||+.+++++||||||||...++.+++.+++.+++..+..++|++..
T Consensus 220 ~v~~vGpl~~~~~~----------~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~ 289 (442)
T PLN02208 220 KVLLTGPMFPEPDT----------SKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKP 289 (442)
T ss_pred CEEEEeecccCcCC----------CCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeC
Confidence 99999999764310 01146789999999988899999999999999999999998887788888888874
Q ss_pred CCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhccCCCcccccccCchhHHHHHHhCCceecCCcccccchhHH
Q 010093 353 NKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNEK 432 (518)
Q Consensus 353 ~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~ 432 (518)
+. +..+..+.+|++|..+.+..|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+
T Consensus 290 ~~---~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~ 366 (442)
T PLN02208 290 PR---GSSTVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTR 366 (442)
T ss_pred CC---cccchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHH
Confidence 31 000112248999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 010093 433 MVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVG--DRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEEL 510 (518)
Q Consensus 433 ~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~--~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 510 (518)
++++.+|+|+.+... +++.+++++|.++|+++|++ ++.+.+|++|+++++++. + +|+++.++++||+.+
T Consensus 367 ~~~~~~g~gv~~~~~-----~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~---~-~gsS~~~l~~~v~~l 437 (442)
T PLN02208 367 LMTEEFEVSVEVSRE-----KTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV---S-PGLLTGYVDKFVEEL 437 (442)
T ss_pred HHHHHhceeEEeccc-----cCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh---c-CCcHHHHHHHHHHHH
Confidence 986559999999753 01248999999999999973 235679999999998875 4 789999999999998
Q ss_pred Hhh
Q 010093 511 RLS 513 (518)
Q Consensus 511 ~~~ 513 (518)
.++
T Consensus 438 ~~~ 440 (442)
T PLN02208 438 QEY 440 (442)
T ss_pred HHh
Confidence 643
No 7
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.4e-62 Score=493.98 Aligned_cols=434 Identities=27% Similarity=0.468 Sum_probs=324.2
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCC-CC
Q 010093 33 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEG-CE 111 (518)
Q Consensus 33 ~~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~-~~ 111 (518)
+++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+... ...++++..+| ++++.+ .+
T Consensus 3 ~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ip-----dglp~~~~~ 71 (449)
T PLN02173 3 KMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATIS-----DGYDQGGFS 71 (449)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcC-----CCCCCcccc
Confidence 4678999999999999999999999999999999999999765544321 12258888876 356652 22
Q ss_pred ccccccchhhhhhHHHHHHHHHhhHHHHHHHHhh----CCC-CEEEecCCCccHHHHHHHcCCCeEEEecchHHHHHHHh
Q 010093 112 NLDAITNEVNKGLIVKFFGATMKLQEPLEQLLQE----HKP-DCLVADTFFPWATDAAAKFGIPRLVFHGTSFFSLCASN 186 (518)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~----~~p-DlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~~~~~~~~ 186 (518)
... .....+......+.+.+++++++ .+| |+||+|.++.|+..+|+++|||++.++++++..+..+.
T Consensus 72 ~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~ 143 (449)
T PLN02173 72 SAG--------SVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINY 143 (449)
T ss_pred ccc--------CHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHH
Confidence 211 11112222223445566666654 245 99999999999999999999999999998877765554
Q ss_pred hhhhcCCCCCCCCCCCccccCCCCCCccccCCCCCcccccCCCCchHHHHHHHhhhhcccccEEEEcCccccchHHHHHH
Q 010093 187 CLALYEPHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHY 266 (518)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~L~~~~~~~~ 266 (518)
+..... ......+|+++. +..++++.++............+.+.......++++++|||++||+.+.+.+
T Consensus 144 ~~~~~~-------~~~~~~~pg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~ 213 (449)
T PLN02173 144 LSYINN-------GSLTLPIKDLPL---LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELL 213 (449)
T ss_pred hHHhcc-------CCccCCCCCCCC---CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHH
Confidence 321110 012234677765 5556777652110011112222223334567788999999999999999888
Q ss_pred HHhhCCcEEEeCccccCCc---Cc-hhhhhcCCCCC-cChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHh
Q 010093 267 RKALGRRAWHIGPVSLCNR---NF-EDKALRGKQAS-IDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEA 341 (518)
Q Consensus 267 ~~~~~~~v~~vGpl~~~~~---~~-~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~ 341 (518)
+.. ++++.|||+..... .. ......+..+. ..+++|.+||+.+++++||||||||...++.+++.+++.+|
T Consensus 214 ~~~--~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL-- 289 (449)
T PLN02173 214 SKV--CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI-- 289 (449)
T ss_pred Hhc--CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--
Confidence 653 47999999974210 00 00000001110 12456999999998889999999999999999999999999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhccCCCcccccccCchhHHHHHHhCCceecC
Q 010093 342 SGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTW 421 (518)
Q Consensus 342 ~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~ 421 (518)
.+.+|+|++.... ...+|++|.++.+++|+++++|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 290 s~~~flWvvr~~~--------~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~ 361 (449)
T PLN02173 290 SNFSYLWVVRASE--------ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAM 361 (449)
T ss_pred cCCCEEEEEeccc--------hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEec
Confidence 6788999997432 11378888877767899999999999999999999999999999999999999999999
Q ss_pred CcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHH
Q 010093 422 PVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYS 501 (518)
Q Consensus 422 P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 501 (518)
|+++||+.||+++++.+|+|+.+... +.+..++.++|.++|+++|.+++.+++|++|+++++++++|+.+|||++.
T Consensus 362 P~~~DQ~~Na~~v~~~~g~Gv~v~~~----~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~ 437 (449)
T PLN02173 362 PQWTDQPMNAKYIQDVWKVGVRVKAE----KESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDI 437 (449)
T ss_pred CchhcchHHHHHHHHHhCceEEEeec----ccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 99999999999997556999998653 01124699999999999998555679999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 010093 502 DLSALIEELR 511 (518)
Q Consensus 502 ~~~~~~~~~~ 511 (518)
++++||+++.
T Consensus 438 ~l~~~v~~~~ 447 (449)
T PLN02173 438 NINTFVSKIQ 447 (449)
T ss_pred HHHHHHHHhc
Confidence 9999999885
No 8
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=3.1e-62 Score=495.42 Aligned_cols=458 Identities=30% Similarity=0.468 Sum_probs=335.7
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCcc
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENL 113 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~ 113 (518)
.+.||+++|+|++||++|++.||+.|+.||+.|||++++.+...+...... ....++++.+|+|.. ++++.+.+..
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~---~~~~i~~~~lp~p~~-dglp~~~~~~ 80 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQ---LSSSITLVSFPLPSV-PGLPSSAESS 80 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhcccc---CCCCeeEEECCCCcc-CCCCCCcccc
Confidence 457999999999999999999999999999999999999876555432110 112488999998754 4677654432
Q ss_pred ccccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhhhcCC
Q 010093 114 DAITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALYEP 193 (518)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 193 (518)
..... .....+......+.+.+++++++.++++||+|.++.|+..+|+++|||++.++++++..++.+.+......
T Consensus 81 ~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~ 156 (472)
T PLN02670 81 TDVPY----TKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLME 156 (472)
T ss_pred cccch----hhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhh
Confidence 21110 11123344556677788888887789999999999999999999999999999998887777654321111
Q ss_pred CCCCCCCCCcc-ccCCCCC---CccccCCCCCcccccCCCC-chHHHHHHHhhhhcccccEEEEcCccccchHHHHHHHH
Q 010093 194 HKKVSSDSEPF-VMPHFPG---EIKLTRNQLPDFVKQDMGD-NDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRK 268 (518)
Q Consensus 194 ~~~~~~~~~~~-~~p~l~~---~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ns~~~L~~~~~~~~~~ 268 (518)
........... .+|++.+ .+.+...+++.+..-.... .....+. +......+++++++|||.+||+.+++.++.
T Consensus 157 ~~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~ 235 (472)
T PLN02670 157 GGDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSV-RFGFAIGGSDVVIIRSSPEFEPEWFDLLSD 235 (472)
T ss_pred cccCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHH-HHHhhcccCCEEEEeCHHHHhHHHHHHHHH
Confidence 11111111111 2344322 1223445666542101111 1122222 333445678899999999999999999987
Q ss_pred hhCCcEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEE
Q 010093 269 ALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEASGRNFIW 348 (518)
Q Consensus 269 ~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~~~~~~i~ 348 (518)
.++.+++.|||+......... . ..... ...++|.+||+++++++||||||||+..++.+++.+++.+|+.++++|||
T Consensus 236 ~~~~~v~~VGPl~~~~~~~~~-~-~~~~~-~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlW 312 (472)
T PLN02670 236 LYRKPIIPIGFLPPVIEDDEE-D-DTIDV-KGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFW 312 (472)
T ss_pred hhCCCeEEEecCCcccccccc-c-ccccc-chhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEE
Confidence 666789999999753110000 0 00000 01267999999998889999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhccCCCcccccccCchhHHHHHHhCCceecCCcccccc
Q 010093 349 VVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQF 428 (518)
Q Consensus 349 ~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~ 428 (518)
++.... +...+..+.+|++|..+.+..++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+
T Consensus 313 v~r~~~--~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~ 390 (472)
T PLN02670 313 VLRNEP--GTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQG 390 (472)
T ss_pred EEcCCc--ccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccH
Confidence 998532 011111224899999888888899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 010093 429 YNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIE 508 (518)
Q Consensus 429 ~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 508 (518)
.||+++ +++|+|+.+... ++++.++.++|.++|+++|.+++.++||+||+++++.++ . .+.....++++++
T Consensus 391 ~Na~~v-~~~g~Gv~l~~~----~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~---~-~~~~~~~~~~~~~ 461 (472)
T PLN02670 391 LNTRLL-HGKKLGLEVPRD----ERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFG---D-MDRNNRYVDELVH 461 (472)
T ss_pred HHHHHH-HHcCeeEEeecc----ccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHh---C-cchhHHHHHHHHH
Confidence 999999 589999999753 112358999999999999974444589999999999998 3 3555667899999
Q ss_pred HHHhhh
Q 010093 509 ELRLSR 514 (518)
Q Consensus 509 ~~~~~~ 514 (518)
.+.+.+
T Consensus 462 ~l~~~~ 467 (472)
T PLN02670 462 YLRENR 467 (472)
T ss_pred HHHHhc
Confidence 888766
No 9
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=4.2e-62 Score=496.20 Aligned_cols=457 Identities=27% Similarity=0.473 Sum_probs=331.7
Q ss_pred CCCCCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhh-h---hccCC-CeEEEEeeCCCcc
Q 010093 29 MGSEIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVER-A---NELGI-EMDVKTIKFPSVE 103 (518)
Q Consensus 29 m~~~~~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~-~---~~~g~-~i~~~~ip~~~~~ 103 (518)
|+.|....||+++|+|++||++||+.||+.|+.+|..|||++++.+...+...... . ...+. .++|..+|
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p----- 75 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE----- 75 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC-----
Confidence 55555778999999999999999999999999999999999999766655421000 0 00111 13444332
Q ss_pred CCCCCCCCccccccchhhhhhHHHHHHHH-HhhHHHHHHHHhh----CCC-CEEEecCCCccHHHHHHHcCCCeEEEecc
Q 010093 104 AGLPEGCENLDAITNEVNKGLIVKFFGAT-MKLQEPLEQLLQE----HKP-DCLVADTFFPWATDAAAKFGIPRLVFHGT 177 (518)
Q Consensus 104 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ll~~----~~p-DlVI~D~~~~~~~~iA~~lgiP~v~~~~~ 177 (518)
++++.+.+... ... .+.... ..+.+.+.+++++ .+| +|||+|.++.|+..+|.++|||.+.++++
T Consensus 76 dglp~~~~~~~--------~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~ 146 (480)
T PLN02555 76 DGWAEDDPRRQ--------DLD-LYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQ 146 (480)
T ss_pred CCCCCCccccc--------CHH-HHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecc
Confidence 35655433111 111 222222 2334555555543 244 99999999999999999999999999999
Q ss_pred hHHHHHHHhhhhhc-CCCCCCCCCCCccccCCCCCCccccCCCCCcccccCCCCchHHHHHHHhhhhcccccEEEEcCcc
Q 010093 178 SFFSLCASNCLALY-EPHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFY 256 (518)
Q Consensus 178 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~ 256 (518)
++..++.+.++... .+......+..+..+|+++. +..++++.++........+...+.+.......++++++|||+
T Consensus 147 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~ 223 (480)
T PLN02555 147 SCACFSAYYHYYHGLVPFPTETEPEIDVQLPCMPL---LKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQ 223 (480)
T ss_pred cHHHHHHHHHHhhcCCCcccccCCCceeecCCCCC---cCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchH
Confidence 99888887766321 11111111113345788875 666777765210001112222222333456678899999999
Q ss_pred ccchHHHHHHHHhhCCcEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHH
Q 010093 257 ELEPAYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIA 336 (518)
Q Consensus 257 ~L~~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~ 336 (518)
+||+.+++.+.... + ++.|||+......... ...+.. +..+++|.+||+.+++++||||||||+..++.+++.+++
T Consensus 224 eLE~~~~~~l~~~~-~-v~~iGPl~~~~~~~~~-~~~~~~-~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela 299 (480)
T PLN02555 224 ELEKEIIDYMSKLC-P-IKPVGPLFKMAKTPNS-DVKGDI-SKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIA 299 (480)
T ss_pred HHhHHHHHHHhhCC-C-EEEeCcccCccccccc-cccccc-cccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHH
Confidence 99999998886643 3 9999999764221100 000111 113568999999998889999999999999999999999
Q ss_pred HHHHhCCCcEEEEEcCCCCCCCCCCC-CCCChhHHHHHhcCCCcEeecCccHHHhhccCCCcccccccCchhHHHHHHhC
Q 010093 337 TGLEASGRNFIWVVSKNKNDGGEGGN-EDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAG 415 (518)
Q Consensus 337 ~al~~~~~~~i~~~~~~~~~~~~~~~-~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~G 415 (518)
.+++.++++|||++.... +..+. ...+|++|..+. .+|+++++|+||.+||.|++|++||||||+||++||+++|
T Consensus 300 ~~l~~~~~~flW~~~~~~---~~~~~~~~~lp~~~~~~~-~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~G 375 (480)
T PLN02555 300 YGVLNSGVSFLWVMRPPH---KDSGVEPHVLPEEFLEKA-GDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSG 375 (480)
T ss_pred HHHHhcCCeEEEEEecCc---ccccchhhcCChhhhhhc-CCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcC
Confidence 999999999999987421 00011 113788876654 5678888999999999999999999999999999999999
Q ss_pred CceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhc
Q 010093 416 VPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVEN 495 (518)
Q Consensus 416 vP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~ 495 (518)
||||++|+++||+.||+++++.+|+|+.+... + +....++.++|.++|+++|.+++.+++|+||++|++++++|+.+
T Consensus 376 VP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~-~--~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~e 452 (480)
T PLN02555 376 VPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRG-E--AENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAE 452 (480)
T ss_pred CCEEeCCCccccHHHHHHHHHHhCceEEccCC-c--cccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999997666999999531 0 00126899999999999998666789999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhh
Q 010093 496 GGSSYSDLSALIEELRLS 513 (518)
Q Consensus 496 ~g~~~~~~~~~~~~~~~~ 513 (518)
|||++.++++||+++...
T Consensus 453 gGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 453 GGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred CCcHHHHHHHHHHHHHhc
Confidence 999999999999999854
No 10
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1e-61 Score=491.10 Aligned_cols=448 Identities=26% Similarity=0.442 Sum_probs=327.5
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEeCCCCc-cchhhhhhhhhccCCCeEEEEeeCCCccCCCCCC
Q 010093 33 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRG--VKASVITTPANA-PYVSKSVERANELGIEMDVKTIKFPSVEAGLPEG 109 (518)
Q Consensus 33 ~~~~kIl~~~~~~~GH~~p~l~LA~~L~~rG--H~Vt~~~~~~~~-~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~ 109 (518)
|++.||+++|+|++||++|++.||+.|+.+| ..|||++++.+. ..+............+++|..+|.... .+..
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~---~~~~ 77 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEE---KPTL 77 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCC---CCcc
Confidence 4668999999999999999999999999998 999999998765 222221110000112488888873211 1110
Q ss_pred CCccccccchhhhhhHHHHHHHH----HhhHHHHHHHHhhC----CC-CEEEecCCCccHHHHHHHcCCCeEEEecchHH
Q 010093 110 CENLDAITNEVNKGLIVKFFGAT----MKLQEPLEQLLQEH----KP-DCLVADTFFPWATDAAAKFGIPRLVFHGTSFF 180 (518)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~ll~~~----~p-DlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~~ 180 (518)
. ... .....+.... ..+.+.+.+++++. +| +|||+|.++.|+..+|+++|||.+.++++++.
T Consensus 78 ~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~ 148 (468)
T PLN02207 78 G-GTQ--------SVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSG 148 (468)
T ss_pred c-ccc--------CHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHH
Confidence 0 000 1111222222 22244555555532 34 89999999999999999999999999999998
Q ss_pred HHHHHhhhhhcC-CCCCC--CCCCCccccCCC-CCCccccCCCCCcccccCCCCchHHHHHHHhhhhcccccEEEEcCcc
Q 010093 181 SLCASNCLALYE-PHKKV--SSDSEPFVMPHF-PGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFY 256 (518)
Q Consensus 181 ~~~~~~~~~~~~-~~~~~--~~~~~~~~~p~l-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~ 256 (518)
.++.+.++.... +.... +....+..+||+ +. +...+++.+ +.....+..+. +......+++++++|||+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPgl~~~---l~~~dlp~~---~~~~~~~~~~~-~~~~~~~~~~~vlvNtf~ 221 (468)
T PLN02207 149 FLAMMQYLADRHSKDTSVFVRNSEEMLSIPGFVNP---VPANVLPSA---LFVEDGYDAYV-KLAILFTKANGILVNSSF 221 (468)
T ss_pred HHHHHHHhhhccccccccCcCCCCCeEECCCCCCC---CChHHCcch---hcCCccHHHHH-HHHHhcccCCEEEEEchH
Confidence 887776553211 11111 111133567887 34 566777765 22221232223 333456788999999999
Q ss_pred ccchHHHHHHHH-hhCCcEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHH
Q 010093 257 ELEPAYADHYRK-ALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEI 335 (518)
Q Consensus 257 ~L~~~~~~~~~~-~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l 335 (518)
+||+++++.+.. ...++++.|||++........ ......+++|.+||+++++++||||||||...++.+++.++
T Consensus 222 ~LE~~~~~~~~~~~~~p~v~~VGPl~~~~~~~~~-----~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~el 296 (468)
T PLN02207 222 DIEPYSVNHFLDEQNYPSVYAVGPIFDLKAQPHP-----EQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEI 296 (468)
T ss_pred HHhHHHHHHHHhccCCCcEEEecCCcccccCCCC-----ccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHH
Confidence 999998888865 344789999999864321100 00001236799999999888999999999999999999999
Q ss_pred HHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhccCCCcccccccCchhHHHHHHhC
Q 010093 336 ATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAG 415 (518)
Q Consensus 336 ~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~G 415 (518)
+.+|+.++++|||++.... . ...+.+|++|.++. ++|..+++|+||.+||+|+++++|||||||||++||+++|
T Consensus 297 a~~l~~~~~~flW~~r~~~----~-~~~~~lp~~f~er~-~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~G 370 (468)
T PLN02207 297 AHGLELCQYRFLWSLRTEE----V-TNDDLLPEGFLDRV-SGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFG 370 (468)
T ss_pred HHHHHHCCCcEEEEEeCCC----c-cccccCCHHHHhhc-CCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcC
Confidence 9999999999999998532 0 11224888988765 4667888999999999999999999999999999999999
Q ss_pred CceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhc
Q 010093 416 VPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVEN 495 (518)
Q Consensus 416 vP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~ 495 (518)
||||++|+++||+.||+++++.+|+|+.+... +.+..++..+.++|.++|+++|. +++++||+||+++++++++|+.+
T Consensus 371 VP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~-~~~~~~~~v~~e~i~~av~~vm~-~~~~~~r~~a~~l~~~a~~A~~~ 448 (468)
T PLN02207 371 VPIVTWPMYAEQQLNAFLMVKELKLAVELKLD-YRVHSDEIVNANEIETAIRCVMN-KDNNVVRKRVMDISQMIQRATKN 448 (468)
T ss_pred CCEEecCccccchhhHHHHHHHhCceEEEecc-cccccCCcccHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999886569999988421 00011134699999999999995 34679999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHh
Q 010093 496 GGSSYSDLSALIEELRL 512 (518)
Q Consensus 496 ~g~~~~~~~~~~~~~~~ 512 (518)
||||+.++++||+++..
T Consensus 449 GGSS~~~l~~~v~~~~~ 465 (468)
T PLN02207 449 GGSSFAAIEKFIHDVIG 465 (468)
T ss_pred CCcHHHHHHHHHHHHHh
Confidence 99999999999998864
No 11
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.4e-61 Score=486.58 Aligned_cols=440 Identities=24% Similarity=0.419 Sum_probs=333.4
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCcc
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENL 113 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~ 113 (518)
.++||+++|++++||++|++.||+.|+.+|+.|||++++.+...+... . . ....+++..+++|.. ++++.+.+..
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~-~-~--~~~~~~v~~~~~p~~-~glp~g~e~~ 78 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL-N-L--FPHNIVFRSVTVPHV-DGLPVGTETV 78 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc-c-c--CCCCceEEEEECCCc-CCCCCccccc
Confidence 568999999999999999999999999999999999999876554432 0 0 011234445444432 3677664433
Q ss_pred ccccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhhhcCC
Q 010093 114 DAITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALYEP 193 (518)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 193 (518)
...+. .....+..+...+.+.+.+++++.++|+||+| +..|+..+|+++|||++.++++++..++.+.. +
T Consensus 79 ~~~~~----~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D-~~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-----~ 148 (453)
T PLN02764 79 SEIPV----TSADLLMSAMDLTRDQVEVVVRAVEPDLIFFD-FAHWIPEVARDFGLKTVKYVVVSASTIASMLV-----P 148 (453)
T ss_pred ccCCh----hHHHHHHHHHHHhHHHHHHHHHhCCCCEEEEC-CchhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-----c
Confidence 32221 23344555666677888888888789999999 57799999999999999999999987776642 1
Q ss_pred CCCCCCCCCccccCCCCCC-ccccCCCCCcccccCC--CCchHHHHHHHhhhhcccccEEEEcCccccchHHHHHHHHhh
Q 010093 194 HKKVSSDSEPFVMPHFPGE-IKLTRNQLPDFVKQDM--GDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRKAL 270 (518)
Q Consensus 194 ~~~~~~~~~~~~~p~l~~~-~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~ns~~~L~~~~~~~~~~~~ 270 (518)
.... ..++|+++.+ +.+..++++.+..... .......+..++......++++++|||++||+.+++++....
T Consensus 149 ~~~~-----~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~ 223 (453)
T PLN02764 149 GGEL-----GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHC 223 (453)
T ss_pred cccC-----CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhc
Confidence 1111 1223677642 1233344443211011 111233455555455677889999999999999999997654
Q ss_pred CCcEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEE
Q 010093 271 GRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEASGRNFIWVV 350 (518)
Q Consensus 271 ~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~~~~~~i~~~ 350 (518)
+++++.|||+...... ....+++|.+|||++++++||||||||+..++.+++.+++.+|+..+.+|+|++
T Consensus 224 ~~~v~~VGPL~~~~~~----------~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~ 293 (453)
T PLN02764 224 RKKVLLTGPVFPEPDK----------TRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAV 293 (453)
T ss_pred CCcEEEeccCccCccc----------cccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 5789999999753210 011246899999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhccCCCcccccccCchhHHHHHHhCCceecCCcccccchh
Q 010093 351 SKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYN 430 (518)
Q Consensus 351 ~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~n 430 (518)
.... ..++....+|++|..+.+..++++.+|+||.+||+|++|++||||||+||++||+++|||||++|++.||+.|
T Consensus 294 r~~~---~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~n 370 (453)
T PLN02764 294 KPPR---GSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLN 370 (453)
T ss_pred eCCC---CCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHH
Confidence 8532 1111223489999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 010093 431 EKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVG--DRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIE 508 (518)
Q Consensus 431 a~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~--~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 508 (518)
|+++++.+|+|+.+... +.+.++.++|.++|+++|++ ++.+.+|++|++++++++ +|||++.++++||+
T Consensus 371 a~~l~~~~g~gv~~~~~-----~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~~l~~lv~ 441 (453)
T PLN02764 371 TRLLSDELKVSVEVARE-----ETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTGYVDNFIE 441 (453)
T ss_pred HHHHHHHhceEEEeccc-----cCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHH
Confidence 99996468888887532 01258999999999999973 335668888888888875 67999999999999
Q ss_pred HHHhhhc
Q 010093 509 ELRLSRH 515 (518)
Q Consensus 509 ~~~~~~~ 515 (518)
++.++..
T Consensus 442 ~~~~~~~ 448 (453)
T PLN02764 442 SLQDLVS 448 (453)
T ss_pred HHHHhcc
Confidence 9987654
No 12
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=2.2e-61 Score=491.34 Aligned_cols=440 Identities=26% Similarity=0.456 Sum_probs=323.0
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHH--HHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCC
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKL--FATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCE 111 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~--L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~ 111 (518)
.+.||+|+|+|++||++|++.||+. |+.||+.|||++++.+...++.... .-..+++..+| ++++.+..
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~----~~~~~~~~~~~-----~glp~~~~ 77 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEK----PRRPVDLVFFS-----DGLPKDDP 77 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccC----CCCceEEEECC-----CCCCCCcc
Confidence 4579999999999999999999999 5599999999999988765533200 00124444443 35555431
Q ss_pred ccccccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhhh-
Q 010093 112 NLDAITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLAL- 190 (518)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~~~~~~~~~~~~- 190 (518)
. .....+......+.+.+++++++.++|+||+|.++.|+..+|+++|||.+.++++++..+..+.+...
T Consensus 78 ~----------~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~ 147 (456)
T PLN02210 78 R----------APETLLKSLNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMK 147 (456)
T ss_pred c----------CHHHHHHHHHHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhc
Confidence 1 11111122223446677788887889999999999999999999999999999988887776655421
Q ss_pred cCCCCCCCCCCCccccCCCCCCccccCCCCCcccccCCCCc--hHHHHHHHhhhhcccccEEEEcCccccchHHHHHHHH
Q 010093 191 YEPHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDN--DFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRK 268 (518)
Q Consensus 191 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~ns~~~L~~~~~~~~~~ 268 (518)
..+.........+..+|+++. +..++++.+ +.... .+..+..++.+....++++++|||.+||+.+++.++.
T Consensus 148 ~~~~~~~~~~~~~~~~Pgl~~---~~~~dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~ 221 (456)
T PLN02210 148 TNSFPDLEDLNQTVELPALPL---LEVRDLPSF---MLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD 221 (456)
T ss_pred cCCCCcccccCCeeeCCCCCC---CChhhCChh---hhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh
Confidence 111111111112345777764 455566653 21111 2333444454455677899999999999999998876
Q ss_pred hhCCcEEEeCccccCCc--CchhhhhcCCC--CCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHhCCC
Q 010093 269 ALGRRAWHIGPVSLCNR--NFEDKALRGKQ--ASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEASGR 344 (518)
Q Consensus 269 ~~~~~v~~vGpl~~~~~--~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~~~~ 344 (518)
. +++++|||+..... ........+.. .+..+++|.+|++.+++++||||||||....+.+++.+++.+|+.+++
T Consensus 222 -~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~ 299 (456)
T PLN02210 222 -L-KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGV 299 (456)
T ss_pred -c-CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCC
Confidence 3 58999999974210 00000000100 012356799999998888999999999998999999999999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhccCCCcccccccCchhHHHHHHhCCceecCCcc
Q 010093 345 NFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVA 424 (518)
Q Consensus 345 ~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~ 424 (518)
+|||+++... .. + .++.|..+..+++..+++|+||.+||+|+++++||||||+||++||+++|||||++|++
T Consensus 300 ~flw~~~~~~---~~-~----~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~ 371 (456)
T PLN02210 300 PFLWVIRPKE---KA-Q----NVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSW 371 (456)
T ss_pred CEEEEEeCCc---cc-c----chhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccc
Confidence 9999997432 00 0 23445444433455678999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 010093 425 AEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLS 504 (518)
Q Consensus 425 ~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~ 504 (518)
+||+.||+++++.+|+|+.+... +.++.+++++|.++|+++|.+++.+++|+||++|++.+++|+++||||+.+++
T Consensus 372 ~DQ~~na~~~~~~~g~G~~l~~~----~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~ 447 (456)
T PLN02210 372 TDQPIDARLLVDVFGIGVRMRND----AVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLD 447 (456)
T ss_pred cccHHHHHHHHHHhCeEEEEecc----ccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 99999999996349999999642 01136899999999999997545568999999999999999999999999999
Q ss_pred HHHHHHHh
Q 010093 505 ALIEELRL 512 (518)
Q Consensus 505 ~~~~~~~~ 512 (518)
+||+++..
T Consensus 448 ~~v~~~~~ 455 (456)
T PLN02210 448 LFISDITI 455 (456)
T ss_pred HHHHHHhc
Confidence 99999864
No 13
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=3.1e-61 Score=485.56 Aligned_cols=443 Identities=26% Similarity=0.471 Sum_probs=332.5
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeCCCCccchh--hhhhhhhccCCCeEEEEeeCCCccCCC-CCC
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATR-GVKASVITTPANAPYVS--KSVERANELGIEMDVKTIKFPSVEAGL-PEG 109 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~~~--~~~~~~~~~g~~i~~~~ip~~~~~~~l-~~~ 109 (518)
.+.||+++|+|++||++|++.||+.|+.+ |..|||++++.....+. ....... ....+++..+|++.. +++ +.+
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~-~~~~i~~~~lp~~~~-~~l~~~~ 79 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAA-ARTTCQITEIPSVDV-DNLVEPD 79 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhcccccccccc-CCCceEEEECCCCcc-ccCCCCC
Confidence 45799999999999999999999999987 99999998886554331 1101000 111488888886532 233 111
Q ss_pred CCccccccchhhhhhHHHHHHHHHhhHHHHHHHHhhC--CCCEEEecCCCccHHHHHHHcCCC-eEEEecchHHHHHHHh
Q 010093 110 CENLDAITNEVNKGLIVKFFGATMKLQEPLEQLLQEH--KPDCLVADTFFPWATDAAAKFGIP-RLVFHGTSFFSLCASN 186 (518)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~pDlVI~D~~~~~~~~iA~~lgiP-~v~~~~~~~~~~~~~~ 186 (518)
. .....+......+.+.+++++++. +++|||+|.++.|+..+|.++||| .+.++++.+..+..+.
T Consensus 80 -----~-------~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~ 147 (470)
T PLN03015 80 -----A-------TIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMV 147 (470)
T ss_pred -----c-------cHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHH
Confidence 0 112234444455667777777753 689999999999999999999999 5777788777776666
Q ss_pred hhhhcC-CCCC-CCCCCCccccCCCCCCccccCCCCCcccccCCCCchHHHHHHHhhhhcccccEEEEcCccccchHHHH
Q 010093 187 CLALYE-PHKK-VSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYAD 264 (518)
Q Consensus 187 ~~~~~~-~~~~-~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~L~~~~~~ 264 (518)
+++... .... ......+..+|+++. +..++++..... .....+..+.+. ......++++++|||++||+.+++
T Consensus 148 ~l~~~~~~~~~~~~~~~~~~~vPg~p~---l~~~dlp~~~~~-~~~~~~~~~~~~-~~~~~~a~gvlvNTf~eLE~~~~~ 222 (470)
T PLN03015 148 YLPVLDTVVEGEYVDIKEPLKIPGCKP---VGPKELMETMLD-RSDQQYKECVRS-GLEVPMSDGVLVNTWEELQGNTLA 222 (470)
T ss_pred hhhhhhcccccccCCCCCeeeCCCCCC---CChHHCCHhhcC-CCcHHHHHHHHH-HHhcccCCEEEEechHHHhHHHHH
Confidence 543211 1011 001113356788875 666677754111 111123333333 334678999999999999999999
Q ss_pred HHHHhh------CCcEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHH
Q 010093 265 HYRKAL------GRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATG 338 (518)
Q Consensus 265 ~~~~~~------~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~a 338 (518)
.++..+ .++++.|||+..... +...+++|.+||+++++++||||||||...++.+++.+++.+
T Consensus 223 ~l~~~~~~~~~~~~~v~~VGPl~~~~~-----------~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~g 291 (470)
T PLN03015 223 ALREDMELNRVMKVPVYPIGPIVRTNV-----------HVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWG 291 (470)
T ss_pred HHHhhcccccccCCceEEecCCCCCcc-----------cccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHH
Confidence 987642 257999999974211 011245799999999889999999999999999999999999
Q ss_pred HHhCCCcEEEEEcCCCC-----CCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhccCCCcccccccCchhHHHHHH
Q 010093 339 LEASGRNFIWVVSKNKN-----DGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVA 413 (518)
Q Consensus 339 l~~~~~~~i~~~~~~~~-----~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~ 413 (518)
|+.++++|||++..... ..+.++..+.+|++|.++.+..++++.+|+||.+||+|+++++|||||||||++||++
T Consensus 292 l~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~ 371 (470)
T PLN03015 292 LELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLT 371 (470)
T ss_pred HHhCCCcEEEEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHH
Confidence 99999999999964210 0001123335899999988888899999999999999999999999999999999999
Q ss_pred hCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHH
Q 010093 414 AGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMV--GDRAEEMRSRAKALGKMAKR 491 (518)
Q Consensus 414 ~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~--~~~~~~~~~~a~~l~~~~~~ 491 (518)
+|||||++|+++||+.||+++++.+|+|+.+... ..++.++.++|.++|+++|. |++.+++|+||+++++++++
T Consensus 372 ~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~----~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~ 447 (470)
T PLN03015 372 KGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSEL----PSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSER 447 (470)
T ss_pred cCCCEEecccccchHHHHHHHHHHhCeeEEeccc----ccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997789999999521 01126899999999999995 25678999999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHH
Q 010093 492 AVENGGSSYSDLSALIEEL 510 (518)
Q Consensus 492 ~~~~~g~~~~~~~~~~~~~ 510 (518)
|+.+||||+.++++||+++
T Consensus 448 Av~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 448 AWSHGGSSYNSLFEWAKRC 466 (470)
T ss_pred HhcCCCcHHHHHHHHHHhc
Confidence 9999999999999999876
No 14
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=8e-61 Score=490.34 Aligned_cols=451 Identities=28% Similarity=0.488 Sum_probs=334.5
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCC----CeEEEEeCCCCcc----chhhhhhhhhccCCCeEEEEeeCCCccC
Q 010093 33 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRG----VKASVITTPANAP----YVSKSVERANELGIEMDVKTIKFPSVEA 104 (518)
Q Consensus 33 ~~~~kIl~~~~~~~GH~~p~l~LA~~L~~rG----H~Vt~~~~~~~~~----~~~~~~~~~~~~g~~i~~~~ip~~~~~~ 104 (518)
|++.||+++|+|++||++|++.||+.|+.+| +.|||++++...+ .+.....+....+..+++..+|.+.
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~--- 77 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVE--- 77 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCC---
Confidence 3567999999999999999999999999997 7999999886532 2322211111112247888887432
Q ss_pred CCCCCCCccccccchhhhhhHHHHHHHHHhhHHHHHHHHhhC--CCCEEEecCCCccHHHHHHHcCCCeEEEecchHHHH
Q 010093 105 GLPEGCENLDAITNEVNKGLIVKFFGATMKLQEPLEQLLQEH--KPDCLVADTFFPWATDAAAKFGIPRLVFHGTSFFSL 182 (518)
Q Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~~~~ 182 (518)
++.+.+.. . ..+......+.+.+++++++. ++++||+|.++.|+..+|+++|||++.|+++++..+
T Consensus 78 -~p~~~e~~---------~--~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~ 145 (480)
T PLN00164 78 -PPTDAAGV---------E--EFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAML 145 (480)
T ss_pred -CCCccccH---------H--HHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHH
Confidence 22222111 1 112223345566677777754 569999999999999999999999999999999888
Q ss_pred HHHhhhhhcC-CCC-CCCCCCCccccCCCCCCccccCCCCCcccccCCCCchHHHHHHHhhhhcccccEEEEcCccccch
Q 010093 183 CASNCLALYE-PHK-KVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEP 260 (518)
Q Consensus 183 ~~~~~~~~~~-~~~-~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~L~~ 260 (518)
..+.+++... ... .......+..+|+++. +...+++.+. ..........+........+++++++|||++||+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~iPGlp~---l~~~dlp~~~--~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~ 220 (480)
T PLN00164 146 ALMLRLPALDEEVAVEFEEMEGAVDVPGLPP---VPASSLPAPV--MDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEP 220 (480)
T ss_pred HHHhhhhhhcccccCcccccCcceecCCCCC---CChHHCCchh--cCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhH
Confidence 8777654211 100 0111012334788775 5666777541 1111111122223334567788999999999999
Q ss_pred HHHHHHHHhh------CCcEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHH
Q 010093 261 AYADHYRKAL------GRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLME 334 (518)
Q Consensus 261 ~~~~~~~~~~------~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~ 334 (518)
.+++.++... .++++.|||+....... . ....+++|.+||+.+++++||||||||....+.+++.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~v~~vGPl~~~~~~~-------~-~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~e 292 (480)
T PLN00164 221 GVLAAIADGRCTPGRPAPTVYPIGPVISLAFTP-------P-AEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVRE 292 (480)
T ss_pred HHHHHHHhccccccCCCCceEEeCCCccccccC-------C-CccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHH
Confidence 9999987642 15899999997432110 0 01135789999999988899999999998899999999
Q ss_pred HHHHHHhCCCcEEEEEcCCCCCC----CCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhccCCCcccccccCchhHHH
Q 010093 335 IATGLEASGRNFIWVVSKNKNDG----GEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTLE 410 (518)
Q Consensus 335 l~~al~~~~~~~i~~~~~~~~~~----~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~e 410 (518)
++.+|+.++++|||++......+ ...+..+.+|++|..+.+..++++.+|+||.+||+|+++++|||||||||++|
T Consensus 293 la~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~E 372 (480)
T PLN00164 293 IAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLE 372 (480)
T ss_pred HHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHH
Confidence 99999999999999998532000 00122334889999888888999999999999999999999999999999999
Q ss_pred HHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcC-C-hHHHHHHHHHHHHHH
Q 010093 411 AVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVG-D-RAEEMRSRAKALGKM 488 (518)
Q Consensus 411 al~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~-~-~~~~~~~~a~~l~~~ 488 (518)
|+++|||||++|+++||+.||+++++.+|+|+.+.... .+++..++++|.++|+++|.+ + +.+.+|++|++++++
T Consensus 373 ai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~---~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~ 449 (480)
T PLN00164 373 SLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDR---KRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAA 449 (480)
T ss_pred HHHcCCCEEeCCccccchhHHHHHHHHhCeEEEecccc---ccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 99999999999999999999998766789999985420 001247999999999999973 2 367899999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhhh
Q 010093 489 AKRAVENGGSSYSDLSALIEELRLSR 514 (518)
Q Consensus 489 ~~~~~~~~g~~~~~~~~~~~~~~~~~ 514 (518)
+++|+++|||++.++++||+++...+
T Consensus 450 ~~~a~~~gGSS~~~l~~~v~~~~~~~ 475 (480)
T PLN00164 450 CRKAVEEGGSSYAALQRLAREIRHGA 475 (480)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHhcc
Confidence 99999999999999999999998654
No 15
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1.5e-60 Score=484.91 Aligned_cols=427 Identities=26% Similarity=0.440 Sum_probs=316.0
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCcc
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENL 113 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~ 113 (518)
.+.||+++|+|++||++|++.||+.|+.+|++||+++++.+...+..... ...+++++.+|. +++.+.
T Consensus 5 ~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~----~~~~i~~v~lp~-----g~~~~~--- 72 (448)
T PLN02562 5 QRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD----PKLGITFMSISD-----GQDDDP--- 72 (448)
T ss_pred CCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC----CCCCEEEEECCC-----CCCCCc---
Confidence 35799999999999999999999999999999999999987665543211 112478887762 232211
Q ss_pred ccccchhhhhhHHHHHHHHH-hhHHHHHHHHhhC----CCCEEEecCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhh
Q 010093 114 DAITNEVNKGLIVKFFGATM-KLQEPLEQLLQEH----KPDCLVADTFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCL 188 (518)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~~~----~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~~~~~~~~~~ 188 (518)
+ . ..+ .+..... .+.+.+.+++++. ++++||+|.++.|+..+|+++|||++.++++++..++.+.+.
T Consensus 73 ---~-~---~~~-~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~ 144 (448)
T PLN02562 73 ---P-R---DFF-SIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAI 144 (448)
T ss_pred ---c-c---cHH-HHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHH
Confidence 0 0 111 2233333 4566666666652 248999999999999999999999999999988777766554
Q ss_pred hhcCCCCCC---C--CCCCcc-ccCCCCCCccccCCCCCcccccCCCCchHHHHHHHhhhhcccccEEEEcCccccchHH
Q 010093 189 ALYEPHKKV---S--SDSEPF-VMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAY 262 (518)
Q Consensus 189 ~~~~~~~~~---~--~~~~~~-~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~L~~~~ 262 (518)
+........ + ....+. .+|+++. +..++++.+.............+.+..+....++++++|||.+||+.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~Pg~~~---l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~ 221 (448)
T PLN02562 145 PELVRTGLISETGCPRQLEKICVLPEQPL---LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDD 221 (448)
T ss_pred HHHhhccccccccccccccccccCCCCCC---CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHH
Confidence 321111111 0 011112 4677764 455666654110111112223333344556778899999999999988
Q ss_pred HHHHHH----hhCCcEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcc-cCCHHHHHHHHH
Q 010093 263 ADHYRK----ALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLA-NFTSAQLMEIAT 337 (518)
Q Consensus 263 ~~~~~~----~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~-~~~~~~~~~l~~ 337 (518)
++.+.. +..++++.|||++....... .+......+.+|.+||+.+++++||||||||+. ..+.+++.+++.
T Consensus 222 ~~~~~~~~~~~~~~~v~~iGpl~~~~~~~~----~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~ 297 (448)
T PLN02562 222 VKNHQASYNNGQNPQILQIGPLHNQEATTI----TKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLAL 297 (448)
T ss_pred HHHHHhhhccccCCCEEEecCccccccccc----CCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHH
Confidence 887653 33578999999976432100 000001124568899999988899999999986 578999999999
Q ss_pred HHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhccCCCcccccccCchhHHHHHHhCCc
Q 010093 338 GLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVP 417 (518)
Q Consensus 338 al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP 417 (518)
+|+.++++|||++.... ...+|++|..+. ++|+++++|+||.+||+|++|++||||||+||++||+++|||
T Consensus 298 ~l~~~g~~fiW~~~~~~--------~~~l~~~~~~~~-~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP 368 (448)
T PLN02562 298 ALEASGRPFIWVLNPVW--------REGLPPGYVERV-SKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKR 368 (448)
T ss_pred HHHHCCCCEEEEEcCCc--------hhhCCHHHHHHh-ccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCC
Confidence 99999999999986432 002777777655 578899999999999999999999999999999999999999
Q ss_pred eecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCC
Q 010093 418 LVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGG 497 (518)
Q Consensus 418 ~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g 497 (518)
||++|+++||+.||+++++.+|+|+.+ . .++.++|.++|+++|. +++||+||++++++++++ .+||
T Consensus 369 ~l~~P~~~DQ~~na~~~~~~~g~g~~~--~--------~~~~~~l~~~v~~~l~---~~~~r~~a~~l~~~~~~~-~~gG 434 (448)
T PLN02562 369 LLCYPVAGDQFVNCAYIVDVWKIGVRI--S--------GFGQKEVEEGLRKVME---DSGMGERLMKLRERAMGE-EARL 434 (448)
T ss_pred EEeCCcccchHHHHHHHHHHhCceeEe--C--------CCCHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHhc-CCCC
Confidence 999999999999999996446888777 3 4799999999999998 779999999999999876 6689
Q ss_pred CcHHHHHHHHHHH
Q 010093 498 SSYSDLSALIEEL 510 (518)
Q Consensus 498 ~~~~~~~~~~~~~ 510 (518)
||+.++++||+++
T Consensus 435 SS~~nl~~~v~~~ 447 (448)
T PLN02562 435 RSMMNFTTLKDEL 447 (448)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999976
No 16
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=2e-60 Score=480.87 Aligned_cols=438 Identities=24% Similarity=0.423 Sum_probs=317.1
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCCCC-ccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCC
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFAT-RGVKASVITTPAN-APYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCE 111 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~~~-~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~ 111 (518)
++.||+++|+|++||++|++.||+.|+. +|+.|||++++.+ ...+... .....+++|+.++ ++++.+.+
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~----~~~~~~i~~~~i~-----dglp~g~~ 72 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPN----HNNVENLSFLTFS-----DGFDDGVI 72 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhcc----CCCCCCEEEEEcC-----CCCCCccc
Confidence 5679999999999999999999999996 6999999999854 1111110 0011247777775 35655432
Q ss_pred ccccccchhhhhhHHHHHHHHHhhHHHHHHHHhh-----CCCCEEEecCCCccHHHHHHHcCCCeEEEecchHHHHHHHh
Q 010093 112 NLDAITNEVNKGLIVKFFGATMKLQEPLEQLLQE-----HKPDCLVADTFFPWATDAAAKFGIPRLVFHGTSFFSLCASN 186 (518)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-----~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~~~~~~~~ 186 (518)
.... .....+......+.+.+.+++++ .++++||+|.++.|+..+|+++|||.+.++++++..++.++
T Consensus 73 ~~~~-------~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~ 145 (455)
T PLN02152 73 SNTD-------DVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYY 145 (455)
T ss_pred cccc-------cHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHH
Confidence 1110 12223333333444555555553 23599999999999999999999999999999999888776
Q ss_pred hhhhcCCCCCCCCCCCccccCCCCCCccccCCCCCcccccCCCCchHHHHHHHhhhhcc--cccEEEEcCccccchHHHH
Q 010093 187 CLALYEPHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDL--RSYGVAVNSFYELEPAYAD 264 (518)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~ns~~~L~~~~~~ 264 (518)
++.... .....+|+++. +..++++.+...-.........+.+...... .++++++|||++||+.+++
T Consensus 146 ~~~~~~--------~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~ 214 (455)
T PLN02152 146 NYSTGN--------NSVFEFPNLPS---LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLT 214 (455)
T ss_pred HhhccC--------CCeeecCCCCC---CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHH
Confidence 543211 12345777765 5566777652100001122233333333332 2469999999999999998
Q ss_pred HHHHhhCCcEEEeCccccCCcCchhhhhcCC--CCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHhC
Q 010093 265 HYRKALGRRAWHIGPVSLCNRNFEDKALRGK--QASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEAS 342 (518)
Q Consensus 265 ~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~~ 342 (518)
.+.. .+++.|||+......... ..+. ..+..+.++.+||+.+++++||||||||+..++.+++++|+.+|+.+
T Consensus 215 ~l~~---~~v~~VGPL~~~~~~~~~--~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s 289 (455)
T PLN02152 215 AIPN---IEMVAVGPLLPAEIFTGS--ESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEG 289 (455)
T ss_pred hhhc---CCEEEEcccCcccccccc--ccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHc
Confidence 8854 369999999753210000 0000 00112457999999998889999999999999999999999999999
Q ss_pred CCcEEEEEcCCCCC-C--CCCCCCC-CChhHHHHHhcCCCcEeecCccHHHhhccCCCcccccccCchhHHHHHHhCCce
Q 010093 343 GRNFIWVVSKNKND-G--GEGGNED-WLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPL 418 (518)
Q Consensus 343 ~~~~i~~~~~~~~~-~--~~~~~~~-~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~ 418 (518)
+++|||++...... . +.++-.. .+|++|.++. .+|.++.+|+||.+||+|+++++||||||+||++||+++||||
T Consensus 290 ~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~-~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~ 368 (455)
T PLN02152 290 KRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHEL-EEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPV 368 (455)
T ss_pred CCCeEEEEecCcccccccccccccccccchhHHHhc-cCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCE
Confidence 99999999753100 0 0000000 1467776654 4677888999999999999999999999999999999999999
Q ss_pred ecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCC
Q 010093 419 VTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGS 498 (518)
Q Consensus 419 l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~ 498 (518)
|++|+++||+.||+++++.+|+|+.+... .++..+.++|.++|+++|+ +++.+||++|+++++++++++.+||+
T Consensus 369 l~~P~~~DQ~~na~~~~~~~~~G~~~~~~-----~~~~~~~e~l~~av~~vm~-~~~~~~r~~a~~~~~~~~~a~~~ggs 442 (455)
T PLN02152 369 VAFPMWSDQPANAKLLEEIWKTGVRVREN-----SEGLVERGEIRRCLEAVME-EKSVELRESAEKWKRLAIEAGGEGGS 442 (455)
T ss_pred EeccccccchHHHHHHHHHhCceEEeecC-----cCCcCcHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 99999999999999997446777777532 1124699999999999996 44557999999999999999999999
Q ss_pred cHHHHHHHHHHH
Q 010093 499 SYSDLSALIEEL 510 (518)
Q Consensus 499 ~~~~~~~~~~~~ 510 (518)
|+.++++||+++
T Consensus 443 S~~nl~~li~~i 454 (455)
T PLN02152 443 SDKNVEAFVKTL 454 (455)
T ss_pred HHHHHHHHHHHh
Confidence 999999999976
No 17
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=2.8e-60 Score=480.69 Aligned_cols=435 Identities=26% Similarity=0.428 Sum_probs=328.4
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCccc
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENLD 114 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~~ 114 (518)
+.||+++|+|+.||++|++.||+.|+.+|++|||++++.+...+..... ....++|..+++|.. ++++.+.+...
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~----~~~~i~~~~i~lP~~-dGLP~g~e~~~ 78 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL----FPDSIVFEPLTLPPV-DGLPFGAETAS 78 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc----CCCceEEEEecCCCc-CCCCCcccccc
Confidence 5799999999999999999999999999999999999987665543310 111478877877643 36776643322
Q ss_pred cccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhhhcCCC
Q 010093 115 AITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALYEPH 194 (518)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 194 (518)
.... .....+......+.+.++++++..+||+||+| ++.|+..+|+++|||++.|+++++..+..+.+...
T Consensus 79 ~l~~----~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D-~~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~---- 149 (446)
T PLN00414 79 DLPN----STKKPIFDAMDLLRDQIEAKVRALKPDLIFFD-FVHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRA---- 149 (446)
T ss_pred cchh----hHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEC-CchhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHh----
Confidence 2211 12333455556677788888887889999999 57899999999999999999999987776654111
Q ss_pred CCCCCCCCccccCCCCCC-ccccCCC--CCcccccCCCCchHHHHHHHhhhhcccccEEEEcCccccchHHHHHHHHhhC
Q 010093 195 KKVSSDSEPFVMPHFPGE-IKLTRNQ--LPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRKALG 271 (518)
Q Consensus 195 ~~~~~~~~~~~~p~l~~~-~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~L~~~~~~~~~~~~~ 271 (518)
... ..+|+++.. ..+...+ ++.+ +.. ....+.+.......++++++|||.+||+.+++.+...++
T Consensus 150 -~~~-----~~~pg~p~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~ 217 (446)
T PLN00414 150 -ELG-----FPPPDYPLSKVALRGHDANVCSL---FAN---SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQ 217 (446)
T ss_pred -hcC-----CCCCCCCCCcCcCchhhcccchh---hcc---cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcC
Confidence 000 123555531 1111111 1121 111 112233334455678899999999999999999977656
Q ss_pred CcEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEc
Q 010093 272 RRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEASGRNFIWVVS 351 (518)
Q Consensus 272 ~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~~~~~~i~~~~ 351 (518)
++++.|||+....... . + ...+++|.+|||++++++||||||||....+.+++.+++.+|+.++.+|+|++.
T Consensus 218 ~~v~~VGPl~~~~~~~-~----~---~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr 289 (446)
T PLN00414 218 RKVLLTGPMLPEPQNK-S----G---KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVM 289 (446)
T ss_pred CCeEEEcccCCCcccc-c----C---cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 6899999997532100 0 0 112457999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhccCCCcccccccCchhHHHHHHhCCceecCCcccccchhH
Q 010093 352 KNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNE 431 (518)
Q Consensus 352 ~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na 431 (518)
... ..++....+|++|..+.+..++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||
T Consensus 290 ~~~---~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na 366 (446)
T PLN00414 290 PPK---GSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLIT 366 (446)
T ss_pred cCC---CcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHH
Confidence 532 11122235899999998888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 010093 432 KMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVG--DRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEE 509 (518)
Q Consensus 432 ~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~--~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 509 (518)
+++++.+|+|+.+... .++.+++++|+++|+++|.+ +..+.+|++|+++++.+. ++||++. .+++||+.
T Consensus 367 ~~~~~~~g~g~~~~~~-----~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~---~~gg~ss-~l~~~v~~ 437 (446)
T PLN00414 367 RLLTEELEVSVKVQRE-----DSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV---SPGLLSG-YADKFVEA 437 (446)
T ss_pred HHHHHHhCeEEEeccc-----cCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH---cCCCcHH-HHHHHHHH
Confidence 9996579999999642 01258999999999999972 335679999999999975 8888443 38999999
Q ss_pred HHhhhc
Q 010093 510 LRLSRH 515 (518)
Q Consensus 510 ~~~~~~ 515 (518)
+.+...
T Consensus 438 ~~~~~~ 443 (446)
T PLN00414 438 LENEVN 443 (446)
T ss_pred HHHhcc
Confidence 966543
No 18
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1e-60 Score=482.46 Aligned_cols=434 Identities=29% Similarity=0.494 Sum_probs=314.6
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCC--CeEEE--EeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCC
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRG--VKASV--ITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCE 111 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rG--H~Vt~--~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~ 111 (518)
-||+++|+|++||++|++.||+.|+.+| +.||+ ++++.+...+............+++|+.+|++.. .+.+..
T Consensus 4 ~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~---~~~~~~ 80 (451)
T PLN03004 4 EAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTP---YSSSST 80 (451)
T ss_pred cEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCC---CCCccc
Confidence 5999999999999999999999999998 45555 5554332221111000000112588888875421 111111
Q ss_pred ccccccchhhhhhHHHHHHHHHhhHHHHHHHHhh----CCCCEEEecCCCccHHHHHHHcCCCeEEEecchHHHHHHHhh
Q 010093 112 NLDAITNEVNKGLIVKFFGATMKLQEPLEQLLQE----HKPDCLVADTFFPWATDAAAKFGIPRLVFHGTSFFSLCASNC 187 (518)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~----~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~~~~~~~~~ 187 (518)
. .. .....+......+...+.+++++ .++++||+|.++.|+..+|+++|||.+.++++++..++.+.+
T Consensus 81 ~--~~------~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~ 152 (451)
T PLN03004 81 S--RH------HHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFY 152 (451)
T ss_pred c--cc------CHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHH
Confidence 1 00 11112222223344444555543 245999999999999999999999999999999988888776
Q ss_pred hhhcC-CCCCCC-CCCCccccCCCCCCccccCCCCCcccccCCCC-chHHHHHHHhhhhcccccEEEEcCccccchHHHH
Q 010093 188 LALYE-PHKKVS-SDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGD-NDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYAD 264 (518)
Q Consensus 188 ~~~~~-~~~~~~-~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ns~~~L~~~~~~ 264 (518)
.+... ...... ....+..+|+++. +..++++.+ .... .....++.+.......++++++|||++||+.+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~v~iPg~p~---l~~~dlp~~---~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~ 226 (451)
T PLN03004 153 LPTIDETTPGKNLKDIPTVHIPGVPP---MKGSDMPKA---VLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIK 226 (451)
T ss_pred HHhccccccccccccCCeecCCCCCC---CChHHCchh---hcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHH
Confidence 54211 100000 1112345788875 566677765 2211 1223344444455677889999999999999999
Q ss_pred HHHHhhC-CcEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHhCC
Q 010093 265 HYRKALG-RRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEASG 343 (518)
Q Consensus 265 ~~~~~~~-~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~~~ 343 (518)
.+...+. ++++.|||+....... . .. ...+.+|.+||+.+++++||||||||...++.+++.+|+.+|+.++
T Consensus 227 ~l~~~~~~~~v~~vGPl~~~~~~~-~----~~--~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~ 299 (451)
T PLN03004 227 AITEELCFRNIYPIGPLIVNGRIE-D----RN--DNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSG 299 (451)
T ss_pred HHHhcCCCCCEEEEeeeccCcccc-c----cc--cchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCC
Confidence 9876543 6899999997432100 0 00 0123579999999988999999999999999999999999999999
Q ss_pred CcEEEEEcCCCC-CCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhccCCCcccccccCchhHHHHHHhCCceecCC
Q 010093 344 RNFIWVVSKNKN-DGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWP 422 (518)
Q Consensus 344 ~~~i~~~~~~~~-~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P 422 (518)
++|||++..... +.+..+....+|++|.++.+..|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|
T Consensus 300 ~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P 379 (451)
T PLN03004 300 QRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWP 379 (451)
T ss_pred CCEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEecc
Confidence 999999985310 0000012223889999999899999999999999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHH
Q 010093 423 VAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYS 501 (518)
Q Consensus 423 ~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 501 (518)
++.||+.||+++++++|+|+.+... +.+..++++|.++|+++|+ +++||++|++++++.++|+++||||+.
T Consensus 380 ~~~DQ~~na~~~~~~~g~g~~l~~~-----~~~~~~~e~l~~av~~vm~---~~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 380 LYAEQRFNRVMIVDEIKIAISMNES-----ETGFVSSTEVEKRVQEIIG---ECPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred ccccchhhHHHHHHHhCceEEecCC-----cCCccCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999999996457999999753 0124799999999999998 679999999999999999999999864
No 19
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.1e-59 Score=483.83 Aligned_cols=449 Identities=27% Similarity=0.439 Sum_probs=323.2
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEeCCCCccchh--h-hhhhhhc-cCCCeEEEEeeCCCccCCCCC
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRG--VKASVITTPANAPYVS--K-SVERANE-LGIEMDVKTIKFPSVEAGLPE 108 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rG--H~Vt~~~~~~~~~~~~--~-~~~~~~~-~g~~i~~~~ip~~~~~~~l~~ 108 (518)
++||+++|+|++||++|++.||+.|+.+| ..|||++++.+...+. . ....... ....++++.+|++.. +.
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~----~~ 77 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQ----PT 77 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCC----Cc
Confidence 36999999999999999999999999998 8899999987754321 1 0000000 022488888874421 11
Q ss_pred CCCccccccchhhhhhHHHHHHHHHhhHHHHHHHHhh-----CCC-CEEEecCCCccHHHHHHHcCCCeEEEecchHHHH
Q 010093 109 GCENLDAITNEVNKGLIVKFFGATMKLQEPLEQLLQE-----HKP-DCLVADTFFPWATDAAAKFGIPRLVFHGTSFFSL 182 (518)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-----~~p-DlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~~~~ 182 (518)
... . .....+......+.+.+.+++.. .+| +|||+|.++.|+..+|+++|||++.|+++++..+
T Consensus 78 -~~~------~---~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~ 147 (481)
T PLN02554 78 -TED------P---TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFL 147 (481)
T ss_pred -ccc------h---HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHH
Confidence 000 0 11122222233445555555532 133 8999999999999999999999999999999988
Q ss_pred HHHhhhhhcC-C--CC--CCCCCCCccccCCCCCCccccCCCCCcccccCCCCchHHHHHHHhhhhcccccEEEEcCccc
Q 010093 183 CASNCLALYE-P--HK--KVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYE 257 (518)
Q Consensus 183 ~~~~~~~~~~-~--~~--~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~ 257 (518)
..+.+.+... . .. ..+....+..+|+++.. +...+++.. .... .....+.+.......++++++|++.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~p--l~~~dlp~~---~~~~-~~~~~~~~~~~~~~~~~gvlvNt~~e 221 (481)
T PLN02554 148 GLQLHVQMLYDEKKYDVSELEDSEVELDVPSLTRP--YPVKCLPSV---LLSK-EWLPLFLAQARRFREMKGILVNTVAE 221 (481)
T ss_pred HHHHhhhhhccccccCccccCCCCceeECCCCCCC--CCHHHCCCc---ccCH-HHHHHHHHHHHhcccCCEEEEechHH
Confidence 8877654321 1 00 11111123457877421 444566654 2111 22233444445667889999999999
Q ss_pred cchHHHHHHHHh--hCCcEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHH
Q 010093 258 LEPAYADHYRKA--LGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEI 335 (518)
Q Consensus 258 L~~~~~~~~~~~--~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l 335 (518)
|++.+...+... ..++++.|||+........ .. ....++++.+|++++++++||||||||+..++.+++.++
T Consensus 222 Le~~~~~~l~~~~~~~~~v~~vGpl~~~~~~~~-----~~-~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~l 295 (481)
T PLN02554 222 LEPQALKFFSGSSGDLPPVYPVGPVLHLENSGD-----DS-KDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREI 295 (481)
T ss_pred HhHHHHHHHHhcccCCCCEEEeCCCcccccccc-----cc-ccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHH
Confidence 999988888653 3368999999943211100 00 011356899999999888999999999988999999999
Q ss_pred HHHHHhCCCcEEEEEcCCCC------CCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhccCCCcccccccCchhHH
Q 010093 336 ATGLEASGRNFIWVVSKNKN------DGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTL 409 (518)
Q Consensus 336 ~~al~~~~~~~i~~~~~~~~------~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~ 409 (518)
+.+|+.++++|||+++.... .++..+..+.+|++|.++. .+|+++++|+||.+||+|++|++||||||+||+.
T Consensus 296 a~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~-~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~ 374 (481)
T PLN02554 296 AIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRT-KDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSIL 374 (481)
T ss_pred HHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHh-ccCceEEeeCCHHHHhCCcccCcccccCccchHH
Confidence 99999999999999975210 0000112233688887765 4677888999999999999999999999999999
Q ss_pred HHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccc---cccCccChHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010093 410 EAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCR---IVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALG 486 (518)
Q Consensus 410 eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~---~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~ 486 (518)
||+++|||||++|+++||+.||+++++++|+|+.+....++. .+...++.++|.++|+++|.+ +++||++|++++
T Consensus 375 Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~--~~~~r~~a~~l~ 452 (481)
T PLN02554 375 ESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQ--DSDVRKRVKEMS 452 (481)
T ss_pred HHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcC--CHHHHHHHHHHH
Confidence 999999999999999999999955337999999986310000 011368999999999999952 369999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHh
Q 010093 487 KMAKRAVENGGSSYSDLSALIEELRL 512 (518)
Q Consensus 487 ~~~~~~~~~~g~~~~~~~~~~~~~~~ 512 (518)
+++++|+.+||++++++++||+++.+
T Consensus 453 ~~~~~av~~gGss~~~l~~lv~~~~~ 478 (481)
T PLN02554 453 EKCHVALMDGGSSHTALKKFIQDVTK 478 (481)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999875
No 20
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.4e-59 Score=481.38 Aligned_cols=438 Identities=28% Similarity=0.426 Sum_probs=321.1
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCC
Q 010093 33 IPQLHVFFFPFMAHGHMIPIVDMAKLFATR--GVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGC 110 (518)
Q Consensus 33 ~~~~kIl~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~ 110 (518)
+.+.||+++|+|++||++|++.||++|+.+ ||+|||++++.+...+..... ..+++|+.+|. +++.+.
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~-----~~gi~fv~lp~-----~~p~~~ 77 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK-----PDNIRFATIPN-----VIPSEL 77 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC-----CCCEEEEECCC-----CCCCcc
Confidence 467899999999999999999999999999 999999999988776655311 12578887762 233222
Q ss_pred CccccccchhhhhhHHHHHHHHHhhHHHHHHHHhh--CCCCEEEecCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhh
Q 010093 111 ENLDAITNEVNKGLIVKFFGATMKLQEPLEQLLQE--HKPDCLVADTFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCL 188 (518)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~~~~~~~~~~ 188 (518)
.... .....+......+.+.+.+++++ .++|+||+|.++.|+..+|+++|||++.++++++..+..+.++
T Consensus 78 ~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~ 149 (459)
T PLN02448 78 VRAA--------DFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHF 149 (459)
T ss_pred cccc--------CHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHh
Confidence 1110 11111122222345566666664 3689999999999999999999999999999998777766555
Q ss_pred hhcCCCCCCCCC-----CC-ccccCCCCCCccccCCCCCcccccCCCCc-hHHHHHHHhhhhcccccEEEEcCccccchH
Q 010093 189 ALYEPHKKVSSD-----SE-PFVMPHFPGEIKLTRNQLPDFVKQDMGDN-DFSRLLKAIDDSDLRSYGVAVNSFYELEPA 261 (518)
Q Consensus 189 ~~~~~~~~~~~~-----~~-~~~~p~l~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ns~~~L~~~ 261 (518)
.........+.. .. ...+|+++. +...+++.+ +.... .....+.........++++++|||++||+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~---~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 223 (459)
T PLN02448 150 DLLPQNGHFPVELSESGEERVDYIPGLSS---TRLSDLPPI---FHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQ 223 (459)
T ss_pred hhhhhccCCCCccccccCCccccCCCCCC---CChHHCchh---hcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHH
Confidence 321111011110 01 113566654 455556654 21111 112223333344566789999999999999
Q ss_pred HHHHHHHhhCCcEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHh
Q 010093 262 YADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEA 341 (518)
Q Consensus 262 ~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~ 341 (518)
+++++...++++++.|||+......... .. .......+.++.+|++..+++++|||||||....+.+++++++.+|+.
T Consensus 224 ~~~~l~~~~~~~~~~iGP~~~~~~~~~~-~~-~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~ 301 (459)
T PLN02448 224 AIDALKSKFPFPVYPIGPSIPYMELKDN-SS-SSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRD 301 (459)
T ss_pred HHHHHHhhcCCceEEecCcccccccCCC-cc-ccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHh
Confidence 9999987777789999998753211000 00 000001235899999998888999999999988889999999999999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhccCCCcccccccCchhHHHHHHhCCceecC
Q 010093 342 SGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTW 421 (518)
Q Consensus 342 ~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~ 421 (518)
++++|||++.... .++.... ++|+++++|+||.+||+|+++++||||||+||++||+++|||||++
T Consensus 302 ~~~~~lw~~~~~~-------------~~~~~~~-~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~ 367 (459)
T PLN02448 302 SGVRFLWVARGEA-------------SRLKEIC-GDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTF 367 (459)
T ss_pred CCCCEEEEEcCch-------------hhHhHhc-cCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEec
Confidence 9999999875422 1222221 3588889999999999999999999999999999999999999999
Q ss_pred CcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHHHhcCCCc
Q 010093 422 PVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVG--DRAEEMRSRAKALGKMAKRAVENGGSS 499 (518)
Q Consensus 422 P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~--~~~~~~~~~a~~l~~~~~~~~~~~g~~ 499 (518)
|++.||+.||+++++.+|+|+.+... ...++..++++|+++|+++|.+ ++.++||++|+++++++++|+.+||||
T Consensus 368 P~~~DQ~~na~~v~~~~g~G~~~~~~---~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss 444 (459)
T PLN02448 368 PLFWDQPLNSKLIVEDWKIGWRVKRE---VGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSS 444 (459)
T ss_pred cccccchhhHHHHHHHhCceEEEecc---cccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 99999999999996447999998532 0011257999999999999972 356799999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 010093 500 YSDLSALIEELRLS 513 (518)
Q Consensus 500 ~~~~~~~~~~~~~~ 513 (518)
+.++++||+.+..-
T Consensus 445 ~~~l~~~v~~~~~~ 458 (459)
T PLN02448 445 DTNLDAFIRDISQG 458 (459)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998754
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.6e-58 Score=474.65 Aligned_cols=456 Identities=27% Similarity=0.431 Sum_probs=316.8
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCCC---eEEEEeCCCCcc-chhhhhhhhhccCCCeEEEEeeCCCccCCCCC
Q 010093 33 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGV---KASVITTPANAP-YVSKSVERANELGIEMDVKTIKFPSVEAGLPE 108 (518)
Q Consensus 33 ~~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH---~Vt~~~~~~~~~-~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~ 108 (518)
|++.||+|+|+|++||++|++.||+.|+.+|. .||+++++.... ...............|+|+.+|++.. +.
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~----p~ 76 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQD----PP 76 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCC----Cc
Confidence 35689999999999999999999999999983 567777554321 11111110000112488988875421 11
Q ss_pred CCCccccccchhhhhhHHHHHHHHHhhHHHHHHHHhh-----C-CCCEEEecCCCccHHHHHHHcCCCeEEEecchHHHH
Q 010093 109 GCENLDAITNEVNKGLIVKFFGATMKLQEPLEQLLQE-----H-KPDCLVADTFFPWATDAAAKFGIPRLVFHGTSFFSL 182 (518)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-----~-~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~~~~ 182 (518)
+.+........ ............+.+.+.+++.+ . +++|||+|.++.|+..+|+++|||++.++++++..+
T Consensus 77 ~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~ 153 (475)
T PLN02167 77 PMELFVKASEA---YILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFL 153 (475)
T ss_pred cccccccchHH---HHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHH
Confidence 11100000000 11111122223334444444432 1 359999999999999999999999999999999888
Q ss_pred HHHhhhhh-cCCCC-CC--CCCCCccccCCCCCCccccCCCCCcccccCCCCchHHHHHHHhhhhcccccEEEEcCcccc
Q 010093 183 CASNCLAL-YEPHK-KV--SSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYEL 258 (518)
Q Consensus 183 ~~~~~~~~-~~~~~-~~--~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~L 258 (518)
+.+.+++. ..... .. .....+..+||++.. +...+++.. +...... ..+.........++++++|||++|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~--l~~~dlp~~---~~~~~~~-~~~~~~~~~~~~a~~vlvNTf~eL 227 (475)
T PLN02167 154 GMMKYLPERHRKTASEFDLSSGEEELPIPGFVNS--VPTKVLPPG---LFMKESY-EAWVEIAERFPEAKGILVNSFTEL 227 (475)
T ss_pred HHHHHHHHhccccccccccCCCCCeeECCCCCCC--CChhhCchh---hhCcchH-HHHHHHHHhhcccCEeeeccHHHH
Confidence 77765532 11111 00 011233457887432 344455543 1111111 222233345677889999999999
Q ss_pred chHHHHHHHHhh--CCcEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHH
Q 010093 259 EPAYADHYRKAL--GRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIA 336 (518)
Q Consensus 259 ~~~~~~~~~~~~--~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~ 336 (518)
|+.+++++.... -++++.|||+........ ...+...+.+|.+||+.+++++||||||||+..++.+++.+++
T Consensus 228 E~~~~~~l~~~~~~~p~v~~vGpl~~~~~~~~-----~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela 302 (475)
T PLN02167 228 EPNAFDYFSRLPENYPPVYPVGPILSLKDRTS-----PNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIA 302 (475)
T ss_pred HHHHHHHHHhhcccCCeeEEeccccccccccC-----CCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHH
Confidence 999999886541 168999999976421100 0001112467999999998889999999999889999999999
Q ss_pred HHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhccCCCcccccccCchhHHHHHHhCC
Q 010093 337 TGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGV 416 (518)
Q Consensus 337 ~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~Gv 416 (518)
.+|+.++++|||+++... ++.. +....+|++|.++.+.. .++++|+||.+||+|++|++|||||||||++||+++||
T Consensus 303 ~~l~~~~~~flw~~~~~~-~~~~-~~~~~lp~~~~er~~~r-g~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~Gv 379 (475)
T PLN02167 303 QALELVGCRFLWSIRTNP-AEYA-SPYEPLPEGFMDRVMGR-GLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGV 379 (475)
T ss_pred HHHHhCCCcEEEEEecCc-cccc-chhhhCChHHHHHhccC-eeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCC
Confidence 999999999999997532 0000 11123888887766443 46679999999999999999999999999999999999
Q ss_pred ceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcC
Q 010093 417 PLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENG 496 (518)
Q Consensus 417 P~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~ 496 (518)
|||++|+++||+.||+++++.+|+|+.+....+ .+.++.+++++|.++|+++|.++ +.||++|+++++++++++.+|
T Consensus 380 P~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~-~~~~~~~~~~~l~~av~~~m~~~--~~~r~~a~~~~~~~~~av~~g 456 (475)
T PLN02167 380 PIATWPMYAEQQLNAFTMVKELGLAVELRLDYV-SAYGEIVKADEIAGAVRSLMDGE--DVPRKKVKEIAEAARKAVMDG 456 (475)
T ss_pred CEEeccccccchhhHHHHHHHhCeeEEeecccc-cccCCcccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999874379999999864200 00112579999999999999733 389999999999999999999
Q ss_pred CCcHHHHHHHHHHHHh
Q 010093 497 GSSYSDLSALIEELRL 512 (518)
Q Consensus 497 g~~~~~~~~~~~~~~~ 512 (518)
||++.++++||+++..
T Consensus 457 GsS~~~l~~~v~~i~~ 472 (475)
T PLN02167 457 GSSFVAVKRFIDDLLG 472 (475)
T ss_pred CcHHHHHHHHHHHHHh
Confidence 9999999999998763
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=2.3e-51 Score=423.40 Aligned_cols=411 Identities=18% Similarity=0.197 Sum_probs=280.8
Q ss_pred CcEEEEE-cCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCcc
Q 010093 35 QLHVFFF-PFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENL 113 (518)
Q Consensus 35 ~~kIl~~-~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~ 113 (518)
..||+.+ |.+++||+.-+.+|+++|++|||+||++++..... .... ...++....++.. .+.+.......
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~~------~~~~~~~i~~~~~--~~~~~~~~~~~ 90 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YASH------LCGNITEIDASLS--VEYFKKLVKSS 90 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-cccC------CCCCEEEEEcCCC--hHHHHHHHhhh
Confidence 4689855 88999999999999999999999999998853211 1100 0123443333211 11111000000
Q ss_pred c------cccc-hhh-hhhHHHHHHHHHhh--HHHHHHHHh--hCCCCEEEecCCCccHHHHHHHc-CCCeEEEecchHH
Q 010093 114 D------AITN-EVN-KGLIVKFFGATMKL--QEPLEQLLQ--EHKPDCLVADTFFPWATDAAAKF-GIPRLVFHGTSFF 180 (518)
Q Consensus 114 ~------~~~~-~~~-~~~~~~~~~~~~~~--~~~l~~ll~--~~~pDlVI~D~~~~~~~~iA~~l-giP~v~~~~~~~~ 180 (518)
. .... ... ...+..+...|+.. .+.+.++++ +.+||+||+|.+..|+..+|+++ ++|+|.++++...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~ 170 (507)
T PHA03392 91 AVFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGL 170 (507)
T ss_pred hHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCc
Confidence 0 0000 000 01112222334332 667788887 67899999998888999999999 9999888876544
Q ss_pred HHHHHhhhhhcCCCCCCCCCCCccccCC----CCCCccccCCCCCc------ccccCCCCchHHHHHHHhh--------h
Q 010093 181 SLCASNCLALYEPHKKVSSDSEPFVMPH----FPGEIKLTRNQLPD------FVKQDMGDNDFSRLLKAID--------D 242 (518)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~----l~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~--------~ 242 (518)
........ +.+..+.++|. +...+++..|.... .+.+........+++++.+ .
T Consensus 171 ~~~~~~~g---------g~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~ 241 (507)
T PHA03392 171 AENFETMG---------AVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRE 241 (507)
T ss_pred hhHHHhhc---------cCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHH
Confidence 33221111 12344455553 22333322221110 0000000011222333332 1
Q ss_pred hcccccEEEEcCccccchHHHHHHHHhhCCcEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecC
Q 010093 243 SDLRSYGVAVNSFYELEPAYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFG 322 (518)
Q Consensus 243 ~~~~~~~~l~ns~~~L~~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslG 322 (518)
...+.+.+++|+...++.+ +++++++++|||+..+... .+.+++++.+|++.+ ++++||||||
T Consensus 242 l~~~~~l~lvns~~~~d~~------rp~~p~v~~vGgi~~~~~~----------~~~l~~~l~~fl~~~-~~g~V~vS~G 304 (507)
T PHA03392 242 LRNRVQLLFVNVHPVFDNN------RPVPPSVQYLGGLHLHKKP----------PQPLDDYLEEFLNNS-TNGVVYVSFG 304 (507)
T ss_pred HHhCCcEEEEecCccccCC------CCCCCCeeeecccccCCCC----------CCCCCHHHHHHHhcC-CCcEEEEECC
Confidence 2245568899999888843 6888999999999774311 122578999999987 4689999999
Q ss_pred Cccc---CCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhccCCCccc
Q 010093 323 SLAN---FTSAQLMEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGF 399 (518)
Q Consensus 323 S~~~---~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ 399 (518)
|... .+.+.+..+++|+++++++|||+++... .+. ..++|+++++|+||.+||+||+|++|
T Consensus 305 S~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~-----------~~~-----~~p~Nv~i~~w~Pq~~lL~hp~v~~f 368 (507)
T PHA03392 305 SSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEV-----------EAI-----NLPANVLTQKWFPQRAVLKHKNVKAF 368 (507)
T ss_pred CCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCc-----------Ccc-----cCCCceEEecCCCHHHHhcCCCCCEE
Confidence 9864 5788999999999999999999998644 110 11569999999999999999999999
Q ss_pred ccccCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHH
Q 010093 400 VTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMR 479 (518)
Q Consensus 400 ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~ 479 (518)
|||||.||++||+++|||||++|+++||+.||+|+ +++|+|+.+++. .++.++|.+||+++|+ +++||
T Consensus 369 ItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv-~~~G~G~~l~~~--------~~t~~~l~~ai~~vl~---~~~y~ 436 (507)
T PHA03392 369 VTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKY-VELGIGRALDTV--------TVSAAQLVLAIVDVIE---NPKYR 436 (507)
T ss_pred EecCCcccHHHHHHcCCCEEECCCCccHHHHHHHH-HHcCcEEEeccC--------CcCHHHHHHHHHHHhC---CHHHH
Confidence 99999999999999999999999999999999999 599999999886 7899999999999998 78999
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 010093 480 SRAKALGKMAKRAVENGGSSYSDLSALIEELR 511 (518)
Q Consensus 480 ~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 511 (518)
++|+++++.++ .+.-+..+.+-.-||++.
T Consensus 437 ~~a~~ls~~~~---~~p~~~~~~av~~iE~v~ 465 (507)
T PHA03392 437 KNLKELRHLIR---HQPMTPLHKAIWYTEHVI 465 (507)
T ss_pred HHHHHHHHHHH---hCCCCHHHHHHHHHHHHH
Confidence 99999999999 444344444455556554
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=2.6e-51 Score=430.41 Aligned_cols=384 Identities=24% Similarity=0.321 Sum_probs=228.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCcccc-
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENLDA- 115 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~~~- 115 (518)
||+++|. ++||+.++.+|+++|++|||+||++++..... +... ....+++..++.+...............
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSS-LNPS------KPSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT-------------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccc-cccc------cccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 7888885 77999999999999999999999998853211 1111 1124566666543322222222111100
Q ss_pred ----ccchh-hhhhHHHHH-------HHHHhh--HHHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEecchHHH
Q 010093 116 ----ITNEV-NKGLIVKFF-------GATMKL--QEPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFHGTSFFS 181 (518)
Q Consensus 116 ----~~~~~-~~~~~~~~~-------~~~~~~--~~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~~~ 181 (518)
..... ....+.... ..|+.+ .+.+.+.+++.++|++|+|.+..|+..+|+.+++|.+.+.+.....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~ 153 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMY 153 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCS
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEecccccc
Confidence 00000 001111111 111111 2334445566789999999998899999999999997654321110
Q ss_pred HHHHhhhhhcCCCCCC-CCCCCccccCCC----CCCccccCCCCCcccccCCCCchHHHH-HHHhhh-------------
Q 010093 182 LCASNCLALYEPHKKV-SSDSEPFVMPHF----PGEIKLTRNQLPDFVKQDMGDNDFSRL-LKAIDD------------- 242 (518)
Q Consensus 182 ~~~~~~~~~~~~~~~~-~~~~~~~~~p~l----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~------------- 242 (518)
...... +.+..+.++|.. +..+++..|....+.. ....+ ......
T Consensus 154 ----------~~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (500)
T PF00201_consen 154 ----------DLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFY------LYFRFIFRYFFSPQDKLYKKYFGFP 217 (500)
T ss_dssp ----------CCTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHH------HHHHHHHHHGGGS-TTS-EEESS-G
T ss_pred ----------hhhhhccCCCCChHHhccccccCCCccchhhhhhhhhhh------hhhccccccchhhHHHHHhhhcccc
Confidence 000111 333445555533 2333332221111100 00011 111111
Q ss_pred -----hcccccEEEEcCccccchHHHHHHHHhhCCcEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEE
Q 010093 243 -----SDLRSYGVAVNSFYELEPAYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVV 317 (518)
Q Consensus 243 -----~~~~~~~~l~ns~~~L~~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI 317 (518)
...+...+++|+...++ ++++++|++++||+++..+.. +.++++..|++...++++|
T Consensus 218 ~~~~~~~~~~~l~l~ns~~~ld------~prp~~p~v~~vGgl~~~~~~------------~l~~~~~~~~~~~~~~~vv 279 (500)
T PF00201_consen 218 FSFRELLSNASLVLINSHPSLD------FPRPLLPNVVEVGGLHIKPAK------------PLPEELWNFLDSSGKKGVV 279 (500)
T ss_dssp GGCHHHHHHHHHCCSSTEEE----------HHHHCTSTTGCGC-S----------------TCHHHHHHHTSTTTTTEEE
T ss_pred cccHHHHHHHHHHhhhccccCc------CCcchhhcccccCcccccccc------------ccccccchhhhccCCCCEE
Confidence 11122334455555544 234556899999998776442 2578999999985578999
Q ss_pred EEecCCccc-CCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhccCCC
Q 010093 318 YVCFGSLAN-FTSAQLMEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAV 396 (518)
Q Consensus 318 yvslGS~~~-~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~ 396 (518)
||||||... .+.+..+.+++++++++++|||++.+.. ++.+ ++|+++++|+||.+||+||++
T Consensus 280 ~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~------------~~~l-----~~n~~~~~W~PQ~~lL~hp~v 342 (500)
T PF00201_consen 280 YVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEP------------PENL-----PKNVLIVKWLPQNDLLAHPRV 342 (500)
T ss_dssp EEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSH------------GCHH-----HTTEEEESS--HHHHHTSTTE
T ss_pred EEecCcccchhHHHHHHHHHHHHhhCCCcccccccccc------------cccc-----cceEEEeccccchhhhhcccc
Confidence 999999986 4455588899999999999999997633 1111 459999999999999999999
Q ss_pred cccccccCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHH
Q 010093 397 GGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAE 476 (518)
Q Consensus 397 ~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~ 476 (518)
++||||||+||++||+++|||||++|+++||+.||+++ ++.|+|+.++.. .++.++|.++|+++|+ |+
T Consensus 343 ~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~-~~~G~g~~l~~~--------~~~~~~l~~ai~~vl~---~~ 410 (500)
T PF00201_consen 343 KLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARV-EEKGVGVVLDKN--------DLTEEELRAAIREVLE---NP 410 (500)
T ss_dssp EEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHH-HHTTSEEEEGGG--------C-SHHHHHHHHHHHHH---SH
T ss_pred eeeeeccccchhhhhhhccCCccCCCCcccCCccceEE-EEEeeEEEEEec--------CCcHHHHHHHHHHHHh---hh
Confidence 99999999999999999999999999999999999999 699999999987 8999999999999999 88
Q ss_pred HHHHHHHHHHHHHHH
Q 010093 477 EMRSRAKALGKMAKR 491 (518)
Q Consensus 477 ~~~~~a~~l~~~~~~ 491 (518)
+|++||+++++++++
T Consensus 411 ~y~~~a~~ls~~~~~ 425 (500)
T PF00201_consen 411 SYKENAKRLSSLFRD 425 (500)
T ss_dssp HHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999994
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=7.5e-43 Score=355.01 Aligned_cols=381 Identities=20% Similarity=0.208 Sum_probs=253.0
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCccccccchh
Q 010093 41 FPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENLDAITNEV 120 (518)
Q Consensus 41 ~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~~~~~~~~ 120 (518)
+.+|+.||++|++.||++|++|||+|+|++++.+.+.++.. ++.+..++........... ... ...
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~--~~~-~~~-- 66 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA---------GAEFVLYGSALPPPDNPPE--NTE-EEP-- 66 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc---------CCEEEecCCcCcccccccc--ccC-cch--
Confidence 35789999999999999999999999999999988887765 5666666532111001110 000 000
Q ss_pred hhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhhhcCCCCCCCCC
Q 010093 121 NKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALYEPHKKVSSD 200 (518)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (518)
......+........+.+.++++..+||+||+|.+++++..+|+++|||+|.+++.+.... ..+..
T Consensus 67 -~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~-------------~~~~~ 132 (392)
T TIGR01426 67 -IDIIEKLLDEAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE-------------EFEEM 132 (392)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc-------------ccccc
Confidence 1233333333344455667777778999999999888999999999999998865421110 00000
Q ss_pred CCccccCCCCCCccccCCCCCcccccCCCCchHHHHHHHhhhh--------cccccEEEEcCccccchHHHHHHHHhhCC
Q 010093 201 SEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDS--------DLRSYGVAVNSFYELEPAYADHYRKALGR 272 (518)
Q Consensus 201 ~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~ns~~~L~~~~~~~~~~~~~~ 272 (518)
. |.+............... .........+..+..-. .......+.. .++.+.+.+..+++
T Consensus 133 ~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~-----~~~~l~~~~~~~~~ 200 (392)
T TIGR01426 133 V-----SPAGEGSAEEGAIAERGL--AEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVY-----TPKAFQPAGETFDD 200 (392)
T ss_pred c-----cccchhhhhhhccccchh--HHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEe-----CChHhCCCccccCC
Confidence 0 000000000000000000 00000111111111100 0000111222 23444444456789
Q ss_pred cEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcC
Q 010093 273 RAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEASGRNFIWVVSK 352 (518)
Q Consensus 273 ~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~ 352 (518)
+++++||+.... .+...|....+++++||||+||+.....+.+..+++++.+.+++++|.++.
T Consensus 201 ~~~~~Gp~~~~~-----------------~~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~ 263 (392)
T TIGR01426 201 SFTFVGPCIGDR-----------------KEDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGR 263 (392)
T ss_pred CeEEECCCCCCc-----------------cccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECC
Confidence 999999976532 122246666567889999999987666678888999999999999999876
Q ss_pred CCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhccCCCcccccccCchhHHHHHHhCCceecCCcccccchhHH
Q 010093 353 NKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNEK 432 (518)
Q Consensus 353 ~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~ 432 (518)
.. +.+.+.+ .++|+.+.+|+||.++|++++ +||||||.||+.||+++|+|+|++|...||+.||.
T Consensus 264 ~~---~~~~~~~----------~~~~v~~~~~~p~~~ll~~~~--~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~ 328 (392)
T TIGR01426 264 GV---DPADLGE----------LPPNVEVRQWVPQLEILKKAD--AFITHGGMNSTMEALFNGVPMVAVPQGADQPMTAR 328 (392)
T ss_pred CC---ChhHhcc----------CCCCeEEeCCCCHHHHHhhCC--EEEECCCchHHHHHHHhCCCEEecCCcccHHHHHH
Confidence 54 1111111 256999999999999998855 59999999999999999999999999999999999
Q ss_pred HHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 010093 433 MVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEEL 510 (518)
Q Consensus 433 ~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 510 (518)
++ +++|+|..+... .+++++|.++|.++|. +++|+++++++++.++ ..+|.. .+.++|+.+
T Consensus 329 ~l-~~~g~g~~l~~~--------~~~~~~l~~ai~~~l~---~~~~~~~~~~l~~~~~---~~~~~~--~aa~~i~~~ 389 (392)
T TIGR01426 329 RI-AELGLGRHLPPE--------EVTAEKLREAVLAVLS---DPRYAERLRKMRAEIR---EAGGAR--RAADEIEGF 389 (392)
T ss_pred HH-HHCCCEEEeccc--------cCCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHH---HcCCHH--HHHHHHHHh
Confidence 99 599999998775 7899999999999998 7799999999999999 666663 345555543
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=4.8e-42 Score=350.63 Aligned_cols=393 Identities=18% Similarity=0.155 Sum_probs=249.1
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCcc-c
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENL-D 114 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~-~ 114 (518)
|||+|++.|+.||++|+++||++|++|||+|+|++++.+...++.. +++|..++............... .
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA---------GLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc---------CCceeeCCCCHHHHHhhhhhccccc
Confidence 6999999999999999999999999999999999999877766654 46666654211000000000000 0
Q ss_pred cccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhhhcCCC
Q 010093 115 AITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALYEPH 194 (518)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 194 (518)
.............+........+.+.+.++.++||+||+|.+.+++..+|+++|||++.+++.+.....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~----------- 140 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTS----------- 140 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccc-----------
Confidence 000000012223334444555666666677799999999998888999999999999998876422110
Q ss_pred CCCCCCCCccccCCCCCCccccCCCCCcccccCCCCchHHHHHHHhhhhcccc--cEEEEcCcccc--chHHHHHHHHhh
Q 010093 195 KKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRS--YGVAVNSFYEL--EPAYADHYRKAL 270 (518)
Q Consensus 195 ~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ns~~~L--~~~~~~~~~~~~ 270 (518)
... |.+ .. .................+.....+......-. ..........+ -.+.+..++..+
T Consensus 141 -----~~~----~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (401)
T cd03784 141 -----AFP----PPL-GR---ANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPPPPDW 207 (401)
T ss_pred -----cCC----Ccc-ch---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCCCCCc
Confidence 000 000 00 00000000000000000111111111111100 00000000100 012222233455
Q ss_pred CCcEEEeC-ccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccC-CHHHHHHHHHHHHhCCCcEEE
Q 010093 271 GRRAWHIG-PVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANF-TSAQLMEIATGLEASGRNFIW 348 (518)
Q Consensus 271 ~~~v~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~-~~~~~~~l~~al~~~~~~~i~ 348 (518)
+++..++| ++...+.. ...+.++..|++. .+++||||+||+... ..+.+..++++++..+.++||
T Consensus 208 ~~~~~~~g~~~~~~~~~-----------~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~ 274 (401)
T cd03784 208 PRFDLVTGYGFRDVPYN-----------GPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAIL 274 (401)
T ss_pred cccCcEeCCCCCCCCCC-----------CCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEE
Confidence 66777775 33322111 1135677788866 366999999999764 456778899999999999999
Q ss_pred EEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhccCCCcccccccCchhHHHHHHhCCceecCCcccccc
Q 010093 349 VVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQF 428 (518)
Q Consensus 349 ~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~ 428 (518)
+++... .. . . ..++|+++.+|+||.++|++ +++||||||+||++||+++|||+|++|...||+
T Consensus 275 ~~g~~~---~~-~--~---------~~~~~v~~~~~~p~~~ll~~--~d~~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~ 337 (401)
T cd03784 275 SLGWGG---LG-A--E---------DLPDNVRVVDFVPHDWLLPR--CAAVVHHGGAGTTAAALRAGVPQLVVPFFGDQP 337 (401)
T ss_pred EccCcc---cc-c--c---------CCCCceEEeCCCCHHHHhhh--hheeeecCCchhHHHHHHcCCCEEeeCCCCCcH
Confidence 998754 10 0 0 12569999999999999988 556999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 010093 429 YNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIE 508 (518)
Q Consensus 429 ~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 508 (518)
.||+++ +++|+|+.+... .+++++|.++|+++|+ + .+++++.++++.++ .++|. ..+.++|+
T Consensus 338 ~~a~~~-~~~G~g~~l~~~--------~~~~~~l~~al~~~l~---~-~~~~~~~~~~~~~~---~~~g~--~~~~~~ie 399 (401)
T cd03784 338 FWAARV-AELGAGPALDPR--------ELTAERLAAALRRLLD---P-PSRRRAAALLRRIR---EEDGV--PSAADVIE 399 (401)
T ss_pred HHHHHH-HHCCCCCCCCcc--------cCCHHHHHHHHHHHhC---H-HHHHHHHHHHHHHH---hccCH--HHHHHHHh
Confidence 999999 699999999876 6899999999999996 5 46667777777777 55655 34466665
Q ss_pred H
Q 010093 509 E 509 (518)
Q Consensus 509 ~ 509 (518)
.
T Consensus 400 ~ 400 (401)
T cd03784 400 R 400 (401)
T ss_pred h
Confidence 3
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-41 Score=341.71 Aligned_cols=394 Identities=23% Similarity=0.304 Sum_probs=253.9
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCccc
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENLD 114 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~~ 114 (518)
||||+|+..|+.||++|+++||++|.++||+|+|++++.+.+.+++. ++.|..++..........+. ..
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a---------g~~f~~~~~~~~~~~~~~~~--~~ 69 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA---------GLAFVAYPIRDSELATEDGK--FA 69 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh---------CcceeeccccCChhhhhhhh--hh
Confidence 58999999999999999999999999999999999999999998887 35576665331110000000 00
Q ss_pred cccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhhhcCCC
Q 010093 115 AITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALYEPH 194 (518)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 194 (518)
.. ..+............++.+++.+..+|+++.|.....+ .++...++|++............. .
T Consensus 70 ~~------~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~-- 134 (406)
T COG1819 70 GV------KSFRRLLQQFKKLIRELLELLRELEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAA------G-- 134 (406)
T ss_pred cc------chhHHHhhhhhhhhHHHHHHHHhcchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCccc------c--
Confidence 00 11111222223345566777888999999999766655 899999999987655432221100 0
Q ss_pred CCCCCCCCccccCCCCCCccccCCCCCcc-cccCCCC-chHHHHHHHhhhhcccc---cEEEEcCccccchHHHHHH--H
Q 010093 195 KKVSSDSEPFVMPHFPGEIKLTRNQLPDF-VKQDMGD-NDFSRLLKAIDDSDLRS---YGVAVNSFYELEPAYADHY--R 267 (518)
Q Consensus 195 ~~~~~~~~~~~~p~l~~~~~~~~~~l~~~-~~~~~~~-~~~~~~~~~~~~~~~~~---~~~l~ns~~~L~~~~~~~~--~ 267 (518)
.+ ..+. .....+......++.. ..+.... ........+........ -..+..+-..+...+.+.. +
T Consensus 135 --~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (406)
T COG1819 135 --LP--LPPV---GIAGKLPIPLYPLPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPP 207 (406)
T ss_pred --cC--cccc---cccccccccccccChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCC
Confidence 00 0000 0000000011101000 0000000 00000000000000000 0000000001110000000 0
Q ss_pred -HhhCCcEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHhCCCcE
Q 010093 268 -KALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEASGRNF 346 (518)
Q Consensus 268 -~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~~~~~~ 346 (518)
..+|....++||+...+ ..++..|.. .++++||+|+||.... .+++..+++++..++.++
T Consensus 208 ~~~~p~~~~~~~~~~~~~----------------~~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~v 268 (406)
T COG1819 208 GDRLPFIGPYIGPLLGEA----------------ANELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRV 268 (406)
T ss_pred CCCCCCCcCccccccccc----------------cccCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEE
Confidence 22345556666665543 233434422 2567999999999876 888999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhccCCCcccccccCchhHHHHHHhCCceecCCcccc
Q 010093 347 IWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAE 426 (518)
Q Consensus 347 i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~D 426 (518)
|..++... . .+.. + ++|+.+.+|+||..+|++++ +||||||+|||+|||++|||+|++|...|
T Consensus 269 i~~~~~~~----~-~~~~-~---------p~n~~v~~~~p~~~~l~~ad--~vI~hGG~gtt~eaL~~gvP~vv~P~~~D 331 (406)
T COG1819 269 IVSLGGAR----D-TLVN-V---------PDNVIVADYVPQLELLPRAD--AVIHHGGAGTTSEALYAGVPLVVIPDGAD 331 (406)
T ss_pred EEeccccc----c-cccc-C---------CCceEEecCCCHHHHhhhcC--EEEecCCcchHHHHHHcCCCEEEecCCcc
Confidence 99997722 1 1222 3 56999999999999998855 59999999999999999999999999999
Q ss_pred cchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 010093 427 QFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSAL 506 (518)
Q Consensus 427 Q~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 506 (518)
|+.||.|+ |+.|+|..+... .++++.|+++|+++|+ ++.|+++++++++.++ +++|. +.++++
T Consensus 332 Q~~nA~rv-e~~G~G~~l~~~--------~l~~~~l~~av~~vL~---~~~~~~~~~~~~~~~~---~~~g~--~~~a~~ 394 (406)
T COG1819 332 QPLNAERV-EELGAGIALPFE--------ELTEERLRAAVNEVLA---DDSYRRAAERLAEEFK---EEDGP--AKAADL 394 (406)
T ss_pred hhHHHHHH-HHcCCceecCcc--------cCCHHHHHHHHHHHhc---CHHHHHHHHHHHHHhh---hcccH--HHHHHH
Confidence 99999999 799999999987 8999999999999999 8899999999999999 78884 556888
Q ss_pred HHHHHhhh
Q 010093 507 IEELRLSR 514 (518)
Q Consensus 507 ~~~~~~~~ 514 (518)
|+++....
T Consensus 395 le~~~~~~ 402 (406)
T COG1819 395 LEEFAREK 402 (406)
T ss_pred HHHHHhcc
Confidence 88866543
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=7.1e-41 Score=351.50 Aligned_cols=416 Identities=30% Similarity=0.433 Sum_probs=250.8
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEE---EEeeCCCccCCCCCCCC
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDV---KTIKFPSVEAGLPEGCE 111 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~---~~ip~~~~~~~l~~~~~ 111 (518)
..+++++++|+.||++|+..||+.|+++||+||++++.......... . ....+.. ..+++....++++....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-S----KSKSIKKINPPPFEFLTIPDGLPEGWE 79 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-c----cceeeeeeecChHHhhhhhhhhccchH
Confidence 35888889999999999999999999999999999998655443221 0 0001111 11111110111111111
Q ss_pred ccccccchhhhhhHHHHHHHHHhhHHH-HHHHH--hhCCCCEEEecCCCccHHHHHHHcC-CCeEEEecchHHHHHHHhh
Q 010093 112 NLDAITNEVNKGLIVKFFGATMKLQEP-LEQLL--QEHKPDCLVADTFFPWATDAAAKFG-IPRLVFHGTSFFSLCASNC 187 (518)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~ll--~~~~pDlVI~D~~~~~~~~iA~~lg-iP~v~~~~~~~~~~~~~~~ 187 (518)
... .... .....+...+...... ..... ...++|++|+|.+..+...+|...+ ++...+.+..........+
T Consensus 80 ~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~ 155 (496)
T KOG1192|consen 80 DDD-LDIS---ESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLP 155 (496)
T ss_pred HHH-HHHH---HHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCc
Confidence 100 0000 1122333333333222 22222 2244999999998667777777775 8888887776666543322
Q ss_pred hhhcCCCCCCCCCCCccc--cCCCCCCcc-ccCCCCCcccccCCCCchHHHHHHHhhhhc----ccccEEEEcC-ccccc
Q 010093 188 LALYEPHKKVSSDSEPFV--MPHFPGEIK-LTRNQLPDFVKQDMGDNDFSRLLKAIDDSD----LRSYGVAVNS-FYELE 259 (518)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~--~p~l~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~ns-~~~L~ 259 (518)
.... ..+....... ...++.+.. +....++....................... .....++.++ +..++
T Consensus 156 ~~~~----~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln 231 (496)
T KOG1192|consen 156 SPLS----YVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLN 231 (496)
T ss_pred Cccc----ccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEc
Confidence 1111 1111000000 000110000 000000000000000000011111111111 1222344444 55555
Q ss_pred hHHHHHH-HHhhCCcEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCC--CcEEEEecCCcc---cCCHHHHH
Q 010093 260 PAYADHY-RKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQP--YSVVYVCFGSLA---NFTSAQLM 333 (518)
Q Consensus 260 ~~~~~~~-~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~vIyvslGS~~---~~~~~~~~ 333 (518)
+.....+ +.+..+++++|||+........ ...+.+|++..+. +++|||||||++ .++.+...
T Consensus 232 ~~~~~~~~~~~~~~~v~~IG~l~~~~~~~~------------~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~ 299 (496)
T KOG1192|consen 232 SNPLLDFEPRPLLPKVIPIGPLHVKDSKQK------------SPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKK 299 (496)
T ss_pred cCcccCCCCCCCCCCceEECcEEecCcccc------------ccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHH
Confidence 4433334 3445699999999988732110 1134455554433 479999999998 68999999
Q ss_pred HHHHHHHhC-CCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHh-hccCCCcccccccCchhHHHH
Q 010093 334 EIATGLEAS-GRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLI-LDHEAVGGFVTHCGWNSTLEA 411 (518)
Q Consensus 334 ~l~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~l-L~~~~~~~~ItHgG~~s~~ea 411 (518)
+++.+++.+ +++|||++.... .. . +++++..+ ..+||+..+|+||.++ |.|+++++||||||+||++|+
T Consensus 300 ~l~~~l~~~~~~~FiW~~~~~~---~~-~----~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~ 370 (496)
T KOG1192|consen 300 ELAKALESLQGVTFLWKYRPDD---SI-Y----FPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLES 370 (496)
T ss_pred HHHHHHHhCCCceEEEEecCCc---ch-h----hhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHH
Confidence 999999999 889999998753 00 0 12222111 2568999999999998 599999999999999999999
Q ss_pred HHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 010093 412 VAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKR 491 (518)
Q Consensus 412 l~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~ 491 (518)
+++|||||++|+++||+.||++++ +.|.|..+... +.+.+.+..++.++++ +++|+++|+++++.++
T Consensus 371 ~~~GvP~v~~Plf~DQ~~Na~~i~-~~g~~~v~~~~--------~~~~~~~~~~~~~il~---~~~y~~~~~~l~~~~~- 437 (496)
T KOG1192|consen 371 IYSGVPMVCVPLFGDQPLNARLLV-RHGGGGVLDKR--------DLVSEELLEAIKEILE---NEEYKEAAKRLSEILR- 437 (496)
T ss_pred HhcCCceecCCccccchhHHHHHH-hCCCEEEEehh--------hcCcHHHHHHHHHHHc---ChHHHHHHHHHHHHHH-
Confidence 999999999999999999999995 88888888776 5666669999999998 8899999999999988
Q ss_pred HHhcCCCc
Q 010093 492 AVENGGSS 499 (518)
Q Consensus 492 ~~~~~g~~ 499 (518)
..-.+.
T Consensus 438 --~~p~~~ 443 (496)
T KOG1192|consen 438 --DQPISP 443 (496)
T ss_pred --cCCCCH
Confidence 444444
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.93 E-value=5.8e-24 Score=211.32 Aligned_cols=323 Identities=15% Similarity=0.113 Sum_probs=199.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCccc
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENLD 114 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~~ 114 (518)
|.||+|...++.||++|.++||++|.++||+|+|++.+.-.+. .. . ...++.+..++.. ++....
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~---~l---~-~~~g~~~~~~~~~----~l~~~~---- 65 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEK---TI---I-EKENIPYYSISSG----KLRRYF---- 65 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccc---cc---C-cccCCcEEEEecc----CcCCCc----
Confidence 3489999999999999999999999999999999997654321 10 0 1124556666421 121110
Q ss_pred cccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCc--cHHHHHHHcCCCeEEEecchHHHHHHHhhhhhcC
Q 010093 115 AITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFP--WATDAAAKFGIPRLVFHGTSFFSLCASNCLALYE 192 (518)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~--~~~~iA~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 192 (518)
.. ..+........ ..-...+++++.+||+||+...+. .+..+|..+++|++.....
T Consensus 66 ~~------~~~~~~~~~~~-~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n--------------- 123 (352)
T PRK12446 66 DL------KNIKDPFLVMK-GVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESD--------------- 123 (352)
T ss_pred hH------HHHHHHHHHHH-HHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCC---------------
Confidence 00 11111111111 122344568889999999875333 4788999999999773221
Q ss_pred CCCCCCCCCCccccCCCCCCccccCCCCCcccccCCCCchHHHHHHHhhhhcccccEEEEcCccccchHHHHHHHHhhC-
Q 010093 193 PHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRKALG- 271 (518)
Q Consensus 193 ~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~L~~~~~~~~~~~~~- 271 (518)
.+|++.+ ++..++.. . +..+|++. ...++
T Consensus 124 ------------~~~g~~n-----------------------r~~~~~a~------~-v~~~f~~~--------~~~~~~ 153 (352)
T PRK12446 124 ------------MTPGLAN-----------------------KIALRFAS------K-IFVTFEEA--------AKHLPK 153 (352)
T ss_pred ------------CCccHHH-----------------------HHHHHhhC------E-EEEEccch--------hhhCCC
Confidence 1122222 11111111 1 12222211 11222
Q ss_pred CcEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCC-HHHHHHHHHHHHhCCCcEEEEE
Q 010093 272 RRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFT-SAQLMEIATGLEASGRNFIWVV 350 (518)
Q Consensus 272 ~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~-~~~~~~l~~al~~~~~~~i~~~ 350 (518)
.++.++|+.....-.. ...+...+.+.-.+++++|+|.-||..... .+.+..++..+. .+.+++|.+
T Consensus 154 ~k~~~tG~Pvr~~~~~-----------~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~ 221 (352)
T PRK12446 154 EKVIYTGSPVREEVLK-----------GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLC 221 (352)
T ss_pred CCeEEECCcCCccccc-----------ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEe
Confidence 5788999543321100 011122222332345779999999998633 233444444443 258899999
Q ss_pred cCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCc-c-HHHhhccCCCcccccccCchhHHHHHHhCCceecCCcc----
Q 010093 351 SKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWA-P-QVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVA---- 424 (518)
Q Consensus 351 ~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~-p-q~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~---- 424 (518)
+.+. +.+.... ..++.+.+|+ + ..+++..+++ +|||||.+|+.|++++|+|+|++|+.
T Consensus 222 G~~~-----------~~~~~~~---~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~ 285 (352)
T PRK12446 222 GKGN-----------LDDSLQN---KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFAS 285 (352)
T ss_pred CCch-----------HHHHHhh---cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCC
Confidence 8654 2111111 1355667887 4 5678988555 99999999999999999999999974
Q ss_pred -cccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHH-HHHHHHHH
Q 010093 425 -AEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAE-EMRSRAKA 484 (518)
Q Consensus 425 -~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~-~~~~~a~~ 484 (518)
.||..||..+ ++.|+|..+... +++++.|.+++.+++. |+ .|++++++
T Consensus 286 ~~~Q~~Na~~l-~~~g~~~~l~~~--------~~~~~~l~~~l~~ll~---~~~~~~~~~~~ 335 (352)
T PRK12446 286 RGDQILNAESF-ERQGYASVLYEE--------DVTVNSLIKHVEELSH---NNEKYKTALKK 335 (352)
T ss_pred CchHHHHHHHH-HHCCCEEEcchh--------cCCHHHHHHHHHHHHc---CHHHHHHHHHH
Confidence 4899999999 599999999765 7899999999999997 43 55544433
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.93 E-value=3.3e-24 Score=212.08 Aligned_cols=309 Identities=21% Similarity=0.282 Sum_probs=192.8
Q ss_pred cEEEEEcCC-CccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCccc
Q 010093 36 LHVFFFPFM-AHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENLD 114 (518)
Q Consensus 36 ~kIl~~~~~-~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~~ 114 (518)
|||+|...+ +.||+.+++.||++| |||+|+|++.....+.+.. .+.+..++.. . ........+
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~----------~~~~~~~~~~--~--~~~~~~~~~ 64 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP----------RFPVREIPGL--G--PIQENGRLD 64 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc----------ccCEEEccCc--e--EeccCCccc
Confidence 699988877 999999999999999 6999999999865433322 1223333211 0 111111111
Q ss_pred cccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhhhcCCC
Q 010093 115 AITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALYEPH 194 (518)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 194 (518)
..... .....+..........+.++++..+||+||+| +.+.+..+|+..|+|++.+........
T Consensus 65 ~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~pDlVIsD-~~~~~~~aa~~~giP~i~i~~~~~~~~------------ 128 (318)
T PF13528_consen 65 RWKTV---RNNIRWLARLARRIRREIRWLREFRPDLVISD-FYPLAALAARRAGIPVIVISNQYWFLH------------ 128 (318)
T ss_pred hHHHH---HHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEc-ChHHHHHHHHhcCCCEEEEEehHHccc------------
Confidence 10000 11111111223345566677888999999999 444567899999999999877642211
Q ss_pred CCCCCCCCccccCCCCCCccccCCCCCcccccCCCCchHHHHHHHhhhh--cccccEEEEcCccccchHHHHHHHHhhCC
Q 010093 195 KKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDS--DLRSYGVAVNSFYELEPAYADHYRKALGR 272 (518)
Q Consensus 195 ~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ns~~~L~~~~~~~~~~~~~~ 272 (518)
+.+. ......+.....+.... ...+...+.-++. .. .....
T Consensus 129 ------------~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~--------~~~~~ 171 (318)
T PF13528_consen 129 ------------PNFW----------------LPWDQDFGRLIERYIDRYHFPPADRRLALSFY-PP--------LPPFF 171 (318)
T ss_pred ------------ccCC----------------cchhhhHHHHHHHhhhhccCCcccceecCCcc-cc--------ccccc
Confidence 0000 00000122222222221 2233333333332 10 11113
Q ss_pred cEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHhCC-CcEEEEEc
Q 010093 273 RAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEASG-RNFIWVVS 351 (518)
Q Consensus 273 ~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~~~-~~~i~~~~ 351 (518)
++.++||+..... ...-. .+++.|+|++|..... .++++++..+ +.+++. +
T Consensus 172 ~~~~~~p~~~~~~-------------------~~~~~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g 223 (318)
T PF13528_consen 172 RVPFVGPIIRPEI-------------------RELPP--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-G 223 (318)
T ss_pred cccccCchhcccc-------------------cccCC--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-c
Confidence 4566777654321 01001 1345899999987542 6678888877 566655 4
Q ss_pred CCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCc--cHHHhhccCCCcccccccCchhHHHHHHhCCceecCCc--cccc
Q 010093 352 KNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWA--PQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPV--AAEQ 427 (518)
Q Consensus 352 ~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~--pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~--~~DQ 427 (518)
... . - ...+|+.+.++. ...++|.. ++++|+|||.+|++||+++|+|+|++|. ..||
T Consensus 224 ~~~--------~--~-------~~~~ni~~~~~~~~~~~~~m~~--ad~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ 284 (318)
T PF13528_consen 224 PNA--------A--D-------PRPGNIHVRPFSTPDFAELMAA--ADLVISKGGYTTISEALALGKPALVIPRPGQDEQ 284 (318)
T ss_pred CCc--------c--c-------ccCCCEEEeecChHHHHHHHHh--CCEEEECCCHHHHHHHHHcCCCEEEEeCCCCchH
Confidence 322 0 1 115699999886 35778966 5559999999999999999999999998 8899
Q ss_pred chhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHH
Q 010093 428 FYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEI 469 (518)
Q Consensus 428 ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~l 469 (518)
..||+++ +++|+|..+... +++++.|.++|+++
T Consensus 285 ~~~a~~l-~~~G~~~~~~~~--------~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 285 EYNARKL-EELGLGIVLSQE--------DLTPERLAEFLERL 317 (318)
T ss_pred HHHHHHH-HHCCCeEEcccc--------cCCHHHHHHHHhcC
Confidence 9999999 799999999876 89999999999875
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.89 E-value=7.4e-22 Score=194.92 Aligned_cols=308 Identities=17% Similarity=0.149 Sum_probs=173.7
Q ss_pred EEEEEcCC-CccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeE-EEEeeCCCccCCCCCCCCccc
Q 010093 37 HVFFFPFM-AHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMD-VKTIKFPSVEAGLPEGCENLD 114 (518)
Q Consensus 37 kIl~~~~~-~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~-~~~ip~~~~~~~l~~~~~~~~ 114 (518)
||+|...+ +.||+.|.++||++|.+ ||+|+|++.......++.. + +. +..+|... .....+ ..+
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~-------~--~~~~~~~p~~~--~~~~~~--~~~ 66 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKY-------G--FKVFETFPGIK--LKGEDG--KVN 66 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhh-------c--CcceeccCCce--EeecCC--cCc
Confidence 67887766 66999999999999999 9999999887633333322 2 21 22222100 000011 000
Q ss_pred cccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhhhcCCC
Q 010093 115 AITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALYEPH 194 (518)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 194 (518)
.. ..+...............+++++.+||+||+| +.+.+..+|..+|||++.+..+....
T Consensus 67 ---~~---~~l~~~~~~~~~~~~~~~~~l~~~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~~------------- 126 (321)
T TIGR00661 67 ---IV---KTLRNKEYSPKKAIRREINIIREYNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYTR------------- 126 (321)
T ss_pred ---HH---HHHHhhccccHHHHHHHHHHHHhcCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhhc-------------
Confidence 00 11110001101223345678888999999999 66667889999999999877631100
Q ss_pred CCCCCCCCccccCCCCCCccccCCCCCcccccCCCCchHHHHHHHhhhhc-ccccEEEEcCccccchHHHHHHHHhhCCc
Q 010093 195 KKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSD-LRSYGVAVNSFYELEPAYADHYRKALGRR 273 (518)
Q Consensus 195 ~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ns~~~L~~~~~~~~~~~~~~~ 273 (518)
.|+... . ...........+ ...+......+.....- . |.
T Consensus 127 -----------~~~~~~-----------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-p~ 166 (321)
T TIGR00661 127 -----------YPLKTD-----------L---------IVYPTMAALRIFNERCERFIVPDYPFPYTI--------C-PK 166 (321)
T ss_pred -----------CCcccc-----------h---------hHHHHHHHHHHhccccceEeeecCCCCCCC--------C-cc
Confidence 011000 0 001111111111 11222222222211100 0 10
Q ss_pred EE--EeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHhCCC-cEEEEE
Q 010093 274 AW--HIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEASGR-NFIWVV 350 (518)
Q Consensus 274 v~--~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~~~~-~~i~~~ 350 (518)
+. .-+|. .+.+..++... +.+.|++.+|+... ..+++++++.+. .+++
T Consensus 167 ~~~~~~~~~-------------------~~~~~~~~~~~--~~~~iLv~~g~~~~------~~l~~~l~~~~~~~~i~-- 217 (321)
T TIGR00661 167 IIKNMEGPL-------------------IRYDVDDVDNY--GEDYILVYIGFEYR------YKILELLGKIANVKFVC-- 217 (321)
T ss_pred ccccCCCcc-------------------cchhhhccccC--CCCcEEEECCcCCH------HHHHHHHHhCCCeEEEE--
Confidence 00 00111 01222233322 23467777888532 456777877764 4442
Q ss_pred cCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCcc--HHHhhccCCCcccccccCchhHHHHHHhCCceecCCccc--c
Q 010093 351 SKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAP--QVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAA--E 426 (518)
Q Consensus 351 ~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~p--q~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~--D 426 (518)
.... .....+ ++|+.+.+|.| ..++|.. ++++|||||.+|++||+++|+|++.+|... |
T Consensus 218 ~~~~------~~~~~~---------~~~v~~~~~~~~~~~~~l~~--ad~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~e 280 (321)
T TIGR00661 218 YSYE------VAKNSY---------NENVEIRRITTDNFKELIKN--AELVITHGGFSLISEALSLGKPLIVIPDLGQFE 280 (321)
T ss_pred eCCC------CCcccc---------CCCEEEEECChHHHHHHHHh--CCEEEECCChHHHHHHHHcCCCEEEEcCCCccc
Confidence 2211 000012 35999999998 4556655 677999999999999999999999999854 8
Q ss_pred cchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHH
Q 010093 427 QFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMR 479 (518)
Q Consensus 427 Q~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~ 479 (518)
|..||..+ ++.|+|+.+... ++ ++.+++.++++ ++.|+
T Consensus 281 Q~~na~~l-~~~g~~~~l~~~--------~~---~~~~~~~~~~~---~~~~~ 318 (321)
T TIGR00661 281 QGNNAVKL-EDLGCGIALEYK--------EL---RLLEAILDIRN---MKRYK 318 (321)
T ss_pred HHHHHHHH-HHCCCEEEcChh--------hH---HHHHHHHhccc---ccccc
Confidence 99999999 599999999765 34 66777777776 55553
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.87 E-value=9.8e-20 Score=178.83 Aligned_cols=324 Identities=19% Similarity=0.205 Sum_probs=198.6
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCccc
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGV-KASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENLD 114 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH-~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~~ 114 (518)
++|++...++.||+.|.++|+++|.++|+ +|.++.+....+..... ...+.++.++... +.... ..
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~-------~~~~~~~~I~~~~----~~~~~-~~- 67 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVK-------QYGIEFELIPSGG----LRRKG-SL- 67 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeecc-------ccCceEEEEeccc----ccccC-cH-
Confidence 47889999999999999999999999999 58888665433322211 1256677776321 11111 11
Q ss_pred cccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCc--cHHHHHHHcCCCeEEEecchHHHHHHHhhhhhcC
Q 010093 115 AITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFP--WATDAAAKFGIPRLVFHGTSFFSLCASNCLALYE 192 (518)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~--~~~~iA~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 192 (518)
..+...... .......++++++.+||+||+-..+. .+..+|..+|||++..-.
T Consensus 68 --------~~~~~~~~~-~~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEq---------------- 122 (357)
T COG0707 68 --------KLLKAPFKL-LKGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQ---------------- 122 (357)
T ss_pred --------HHHHHHHHH-HHHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEec----------------
Confidence 100000001 12244667788899999999854333 678899999999987321
Q ss_pred CCCCCCCCCCccccCCCCCCccccCCCCCcccccCCCCchHHHHHHHhhhhcccccEEEEcCccccchHHHHHHHHhhCC
Q 010093 193 PHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRKALGR 272 (518)
Q Consensus 193 ~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~L~~~~~~~~~~~~~~ 272 (518)
..+||...+ +..+... ....+|..... ..-+.
T Consensus 123 -----------n~~~G~ank-----------------------~~~~~a~-------~V~~~f~~~~~-------~~~~~ 154 (357)
T COG0707 123 -----------NAVPGLANK-----------------------ILSKFAK-------KVASAFPKLEA-------GVKPE 154 (357)
T ss_pred -----------CCCcchhHH-----------------------HhHHhhc-------eeeeccccccc-------cCCCC
Confidence 122333321 1111100 11122221110 00013
Q ss_pred cEEEeC-ccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHhC--CCcEEEE
Q 010093 273 RAWHIG-PVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEAS--GRNFIWV 349 (518)
Q Consensus 273 ~v~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~~--~~~~i~~ 349 (518)
+++.+| |+...-.. .+..-.++.... ++++|+|.-||..... +-+.+.+++..+ +.++++.
T Consensus 155 ~~~~tG~Pvr~~~~~-------------~~~~~~~~~~~~-~~~~ilV~GGS~Ga~~--ln~~v~~~~~~l~~~~~v~~~ 218 (357)
T COG0707 155 NVVVTGIPVRPEFEE-------------LPAAEVRKDGRL-DKKTILVTGGSQGAKA--LNDLVPEALAKLANRIQVIHQ 218 (357)
T ss_pred ceEEecCcccHHhhc-------------cchhhhhhhccC-CCcEEEEECCcchhHH--HHHHHHHHHHHhhhCeEEEEE
Confidence 578888 55432110 011111222222 5779999999987522 222233333333 4688888
Q ss_pred EcCCCCCCCCCCCCCCChhHHHHHhcCCC-cEeecCccH-HHhhccCCCcccccccCchhHHHHHHhCCceecCCc-c--
Q 010093 350 VSKNKNDGGEGGNEDWLPEGFEKRMEGKG-LIIRGWAPQ-VLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPV-A-- 424 (518)
Q Consensus 350 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~n-v~~~~~~pq-~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~-~-- 424 (518)
++.+. + +.........| +.+.+|..+ ..+++-+++ +||++|.+|+.|++++|+|++.+|. .
T Consensus 219 ~G~~~-----------~-~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~ 284 (357)
T COG0707 219 TGKND-----------L-EELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGA 284 (357)
T ss_pred cCcch-----------H-HHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCc
Confidence 87653 1 11111122233 778888874 678877555 9999999999999999999999996 3
Q ss_pred -cccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010093 425 -AEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAK 490 (518)
Q Consensus 425 -~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~ 490 (518)
.||..||..+ ++.|.|..+... +++++.|.+.|.+++. + .++..++++..+
T Consensus 285 ~~~Q~~NA~~l-~~~gaa~~i~~~--------~lt~~~l~~~i~~l~~---~---~~~l~~m~~~a~ 336 (357)
T COG0707 285 DGHQEYNAKFL-EKAGAALVIRQS--------ELTPEKLAELILRLLS---N---PEKLKAMAENAK 336 (357)
T ss_pred cchHHHHHHHH-HhCCCEEEeccc--------cCCHHHHHHHHHHHhc---C---HHHHHHHHHHHH
Confidence 3899999999 699999999876 7999999999999997 3 445555555555
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.80 E-value=5.8e-17 Score=162.96 Aligned_cols=326 Identities=16% Similarity=0.124 Sum_probs=190.9
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCccc
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENLD 114 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~~ 114 (518)
||||+|...+..||...+..||+.|.++||+|++++.+.... .... ...++.++.++.+. ..... ..
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~-~~~~------~~~g~~~~~~~~~~----~~~~~-~~- 67 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGME-ARLV------PKAGIEFHFIPSGG----LRRKG-SL- 67 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchh-hhcc------ccCCCcEEEEeccC----cCCCC-hH-
Confidence 589999999888999999999999999999999999865211 0000 01134555554221 11100 00
Q ss_pred cccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCC-c-cHHHHHHHcCCCeEEEecchHHHHHHHhhhhhcC
Q 010093 115 AITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFF-P-WATDAAAKFGIPRLVFHGTSFFSLCASNCLALYE 192 (518)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~-~-~~~~iA~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 192 (518)
..+..... .......+.+++++.+||+|++.... . .+..++...++|++......
T Consensus 68 --------~~l~~~~~-~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~-------------- 124 (357)
T PRK00726 68 --------ANLKAPFK-LLKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA-------------- 124 (357)
T ss_pred --------HHHHHHHH-HHHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC--------------
Confidence 11111111 12223456677888999999999632 2 45667888899998531100
Q ss_pred CCCCCCCCCCccccCCCCCCccccCCCCCcccccCCCCchHHHHHHHhhhhcccccEEEEcCccccchHHHHHHHHhhCC
Q 010093 193 PHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRKALGR 272 (518)
Q Consensus 193 ~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~L~~~~~~~~~~~~~~ 272 (518)
.++ . ..++.. ..++.++..+... +. ..-+.
T Consensus 125 -------------~~~--------------~---------~~r~~~------~~~d~ii~~~~~~-----~~---~~~~~ 154 (357)
T PRK00726 125 -------------VPG--------------L---------ANKLLA------RFAKKVATAFPGA-----FP---EFFKP 154 (357)
T ss_pred -------------Ccc--------------H---------HHHHHH------HHhchheECchhh-----hh---ccCCC
Confidence 000 0 001000 1122222211100 00 02236
Q ss_pred cEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHH-HHHHHHhCCC--cEEEE
Q 010093 273 RAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLME-IATGLEASGR--NFIWV 349 (518)
Q Consensus 273 ~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~-l~~al~~~~~--~~i~~ 349 (518)
++.++|......... .+..-..+ ...++..+|++.-|+.. .+.... +.++++++.. .++|.
T Consensus 155 ~i~vi~n~v~~~~~~------------~~~~~~~~-~~~~~~~~i~~~gg~~~---~~~~~~~l~~a~~~~~~~~~~~~~ 218 (357)
T PRK00726 155 KAVVTGNPVREEILA------------LAAPPARL-AGREGKPTLLVVGGSQG---ARVLNEAVPEALALLPEALQVIHQ 218 (357)
T ss_pred CEEEECCCCChHhhc------------ccchhhhc-cCCCCCeEEEEECCcHh---HHHHHHHHHHHHHHhhhCcEEEEE
Confidence 788888443321100 00000111 11223456776656542 233333 3477666543 45566
Q ss_pred EcCCCCCCCCCCCCCCChhHHHHHh-cCCCcEeecCcc-HHHhhccCCCcccccccCchhHHHHHHhCCceecCCc----
Q 010093 350 VSKNKNDGGEGGNEDWLPEGFEKRM-EGKGLIIRGWAP-QVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPV---- 423 (518)
Q Consensus 350 ~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~p-q~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~---- 423 (518)
++.+. . +.+.... ..-++.+.+|+. ..++++.++ ++|+|+|.++++||+++|+|+|++|.
T Consensus 219 ~G~g~-----------~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d--~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~ 284 (357)
T PRK00726 219 TGKGD-----------L-EEVRAAYAAGINAEVVPFIDDMAAAYAAAD--LVICRAGASTVAELAAAGLPAILVPLPHAA 284 (357)
T ss_pred cCCCc-----------H-HHHHHHhhcCCcEEEeehHhhHHHHHHhCC--EEEECCCHHHHHHHHHhCCCEEEecCCCCC
Confidence 66544 1 1222111 122478889984 578997755 59999999999999999999999996
Q ss_pred ccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010093 424 AAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKM 488 (518)
Q Consensus 424 ~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~ 488 (518)
..||..|+..+ .+.|.|..+... ++++++|.+++.++++ +++++++..+-++.
T Consensus 285 ~~~~~~~~~~i-~~~~~g~~~~~~--------~~~~~~l~~~i~~ll~---~~~~~~~~~~~~~~ 337 (357)
T PRK00726 285 DDHQTANARAL-VDAGAALLIPQS--------DLTPEKLAEKLLELLS---DPERLEAMAEAARA 337 (357)
T ss_pred cCcHHHHHHHH-HHCCCEEEEEcc--------cCCHHHHHHHHHHHHc---CHHHHHHHHHHHHh
Confidence 46899999999 599999999776 6789999999999998 66776555554433
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.74 E-value=2.2e-15 Score=151.07 Aligned_cols=319 Identities=18% Similarity=0.143 Sum_probs=183.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCccccc
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENLDAI 116 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~~~~ 116 (518)
+|+|...++.||......||+.|.++||+|++++...... .... ...++++..+++.. +... ...
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~-~~~~------~~~~~~~~~~~~~~----~~~~-~~~--- 65 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLE-ARLV------PKAGIPLHTIPVGG----LRRK-GSL--- 65 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcch-hhcc------cccCCceEEEEecC----cCCC-ChH---
Confidence 5889999999999999999999999999999998764211 1100 01135566655321 1000 000
Q ss_pred cchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCC--ccHHHHHHHcCCCeEEEecchHHHHHHHhhhhhcCCC
Q 010093 117 TNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFF--PWATDAAAKFGIPRLVFHGTSFFSLCASNCLALYEPH 194 (518)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~--~~~~~iA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 194 (518)
..+..+.. .......+.+++++.+||+|++.... ..+..+|...++|++.....
T Consensus 66 ------~~~~~~~~-~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~----------------- 121 (350)
T cd03785 66 ------KKLKAPFK-LLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN----------------- 121 (350)
T ss_pred ------HHHHHHHH-HHHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC-----------------
Confidence 11111111 11223356677888999999987533 24667788899998752110
Q ss_pred CCCCCCCCccccCCCCCCccccCCCCCcccccCCCCchHHHHHHHhhhhcccccEEEEcCccccchHHHHHHHHhhCCcE
Q 010093 195 KKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRKALGRRA 274 (518)
Q Consensus 195 ~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~L~~~~~~~~~~~~~~~v 274 (518)
.++. . ..++. ...++.++..+-...+ . ..+.++
T Consensus 122 -------------~~~~-----------~---------~~~~~------~~~~~~vi~~s~~~~~-----~---~~~~~~ 154 (350)
T cd03785 122 -------------AVPG-----------L---------ANRLL------ARFADRVALSFPETAK-----Y---FPKDKA 154 (350)
T ss_pred -------------CCcc-----------H---------HHHHH------HHhhCEEEEcchhhhh-----c---CCCCcE
Confidence 0000 0 00000 0123333333211111 0 113577
Q ss_pred EEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHhC---CCcEEEEEc
Q 010093 275 WHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEAS---GRNFIWVVS 351 (518)
Q Consensus 275 ~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~~---~~~~i~~~~ 351 (518)
..+|......... .... ...+...+++.+|++..|+... ......+.+++..+ +..+++.++
T Consensus 155 ~~i~n~v~~~~~~------------~~~~-~~~~~~~~~~~~i~~~~g~~~~--~~~~~~l~~a~~~l~~~~~~~~~i~G 219 (350)
T cd03785 155 VVTGNPVREEILA------------LDRE-RARLGLRPGKPTLLVFGGSQGA--RAINEAVPEALAELLRKRLQVIHQTG 219 (350)
T ss_pred EEECCCCchHHhh------------hhhh-HHhcCCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhccCeEEEEEcC
Confidence 7787533221000 0011 1222222344466666666532 12222233444433 345556665
Q ss_pred CCCCCCCCCCCCCCChhHHHHHh--cCCCcEeecCc-cHHHhhccCCCcccccccCchhHHHHHHhCCceecCCc----c
Q 010093 352 KNKNDGGEGGNEDWLPEGFEKRM--EGKGLIIRGWA-PQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPV----A 424 (518)
Q Consensus 352 ~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~~~~~~-pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~----~ 424 (518)
.+. . +.+.... ..+|+++.+|+ ...++|..++ ++|+++|.+++.||+++|+|+|++|. .
T Consensus 220 ~g~-----------~-~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad--~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~ 285 (350)
T cd03785 220 KGD-----------L-EEVKKAYEELGVNYEVFPFIDDMAAAYAAAD--LVISRAGASTVAELAALGLPAILIPLPYAAD 285 (350)
T ss_pred Ccc-----------H-HHHHHHHhccCCCeEEeehhhhHHHHHHhcC--EEEECCCHhHHHHHHHhCCCEEEeecCCCCC
Confidence 432 1 1121111 14689999998 4577887755 49999999999999999999999985 4
Q ss_pred cccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHH
Q 010093 425 AEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRA 482 (518)
Q Consensus 425 ~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a 482 (518)
.+|..|+..+. +.|.|..+... ..+.++|.+++.+++. ++..+++.
T Consensus 286 ~~~~~~~~~l~-~~g~g~~v~~~--------~~~~~~l~~~i~~ll~---~~~~~~~~ 331 (350)
T cd03785 286 DHQTANARALV-KAGAAVLIPQE--------ELTPERLAAALLELLS---DPERLKAM 331 (350)
T ss_pred CcHHHhHHHHH-hCCCEEEEecC--------CCCHHHHHHHHHHHhc---CHHHHHHH
Confidence 57889999994 89999999764 5689999999999997 55554433
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.68 E-value=3.1e-14 Score=142.66 Aligned_cols=83 Identities=22% Similarity=0.321 Sum_probs=67.7
Q ss_pred cHHHhhccCCCcccccccCchhHHHHHHhCCceecCCc---ccccchhHHHHHHhhhcceeeccccccccccCccChHHH
Q 010093 386 PQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPV---AAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETI 462 (518)
Q Consensus 386 pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~---~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l 462 (518)
...++|..+++ +|+++|.+++.||+++|+|+|++|. ..+|..|+..+ +..|.|..+... +.++++|
T Consensus 243 ~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i-~~~~~G~~~~~~--------~~~~~~l 311 (348)
T TIGR01133 243 NMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFL-EDLGAGLVIRQK--------ELLPEKL 311 (348)
T ss_pred CHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHH-HHCCCEEEEecc--------cCCHHHH
Confidence 45778877554 9999998899999999999999986 24678899899 589999988665 5689999
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 010093 463 EKAVNEIMVGDRAEEMRSRA 482 (518)
Q Consensus 463 ~~av~~ll~~~~~~~~~~~a 482 (518)
.+++.++++ +++.+++.
T Consensus 312 ~~~i~~ll~---~~~~~~~~ 328 (348)
T TIGR01133 312 LEALLKLLL---DPANLEAM 328 (348)
T ss_pred HHHHHHHHc---CHHHHHHH
Confidence 999999997 65555433
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.67 E-value=4.3e-14 Score=142.67 Aligned_cols=347 Identities=12% Similarity=0.072 Sum_probs=193.8
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCC--eEEEEeeCCCccCCCCCCCCcc
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIE--MDVKTIKFPSVEAGLPEGCENL 113 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~--i~~~~ip~~~~~~~l~~~~~~~ 113 (518)
.||+|...++.||++|. +|+++|.++|++|+|++.... .+++. |.+ +.+..++ .
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~-------g~~~~~~~~~l~--------------v 61 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAE-------GCEVLYSMEELS--------------V 61 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhC-------cCccccChHHhh--------------h
Confidence 58999999999999999 999999999999999986521 23322 211 1121111 0
Q ss_pred ccccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEe-cCCCcc--HHHHHHHcCCCeEEEecchHHHHHHHhhhhh
Q 010093 114 DAITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVA-DTFFPW--ATDAAAKFGIPRLVFHGTSFFSLCASNCLAL 190 (518)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~-D~~~~~--~~~iA~~lgiP~v~~~~~~~~~~~~~~~~~~ 190 (518)
..+ . +.+..+... ........+++++.+||+||+ |...+. ....|+.+|||++...+.
T Consensus 62 ~G~--~---~~l~~~~~~-~~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P------------- 122 (385)
T TIGR00215 62 MGL--R---EVLGRLGRL-LKIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISP------------- 122 (385)
T ss_pred ccH--H---HHHHHHHHH-HHHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCC-------------
Confidence 000 0 111111111 223447778888999999996 532323 333889999999874321
Q ss_pred cCCCCCCCCCCCccccCCCCCCccccCCCCCcccccCCCCchHHHHHHHhhhhcccccEEEEcCccccchHHHHHHHHhh
Q 010093 191 YEPHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRKAL 270 (518)
Q Consensus 191 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~L~~~~~~~~~~~~ 270 (518)
..|. | ... ..+.+.+. ++.++. .++ .+... +. ..
T Consensus 123 -----------------~~wa-----------w---~~~---~~r~l~~~------~d~v~~-~~~-~e~~~---~~-~~ 156 (385)
T TIGR00215 123 -----------------QVWA-----------W---RKW---RAKKIEKA------TDFLLA-ILP-FEKAF---YQ-KK 156 (385)
T ss_pred -----------------cHhh-----------c---Ccc---hHHHHHHH------HhHhhc-cCC-CcHHH---HH-hc
Confidence 1111 0 000 01111111 111111 111 12221 22 12
Q ss_pred CCcEEEeC-ccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHhC-----CC
Q 010093 271 GRRAWHIG-PVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEAS-----GR 344 (518)
Q Consensus 271 ~~~v~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~~-----~~ 344 (518)
+.+..+|| |+....... .....+..+-+.-.+++++|.+--||....-.+....+++++..+ +.
T Consensus 157 g~~~~~vGnPv~~~~~~~----------~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~ 226 (385)
T TIGR00215 157 NVPCRFVGHPLLDAIPLY----------KPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDL 226 (385)
T ss_pred CCCEEEECCchhhhcccc----------CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCe
Confidence 34677889 443221100 001122222222233566888877887642234455566555543 33
Q ss_pred cEEEEEcCCCCCCCCCCCCCCChhHHHH---Hh-cCCCcEeecCccHHHhhccCCCcccccccCchhHHHHHHhCCceec
Q 010093 345 NFIWVVSKNKNDGGEGGNEDWLPEGFEK---RM-EGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVT 420 (518)
Q Consensus 345 ~~i~~~~~~~~~~~~~~~~~~lp~~~~~---~~-~~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~ 420 (518)
++++...... ..+.+.. .. ....+.+..+ ...+++..++ ++|+-.|..|+ |++++|+|+|+
T Consensus 227 ~~vi~~~~~~-----------~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~aAD--l~V~~SGt~tl-Ea~a~G~P~Vv 291 (385)
T TIGR00215 227 RRVLPVVNFK-----------RRLQFEQIKAEYGPDLQLHLIDG-DARKAMFAAD--AALLASGTAAL-EAALIKTPMVV 291 (385)
T ss_pred EEEEEeCCch-----------hHHHHHHHHHHhCCCCcEEEECc-hHHHHHHhCC--EEeecCCHHHH-HHHHcCCCEEE
Confidence 4555443322 1112211 11 1123333322 3456886655 49999999887 99999999999
Q ss_pred C----Cccc---------ccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHH----HHHHHHH
Q 010093 421 W----PVAA---------EQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAE----EMRSRAK 483 (518)
Q Consensus 421 ~----P~~~---------DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~----~~~~~a~ 483 (518)
+ |+.. +|..|+..++ ..++...+.-. +.+++.|.+++.++|+ |+ +++++.+
T Consensus 292 ~yk~~pl~~~~~~~~~~~~~~~~~nil~-~~~~~pel~q~--------~~~~~~l~~~~~~ll~---~~~~~~~~~~~~~ 359 (385)
T TIGR00215 292 GYRMKPLTFLIARRLVKTDYISLPNILA-NRLLVPELLQE--------ECTPHPLAIALLLLLE---NGLKAYKEMHRER 359 (385)
T ss_pred EEcCCHHHHHHHHHHHcCCeeeccHHhc-CCccchhhcCC--------CCCHHHHHHHHHHHhc---CCcccHHHHHHHH
Confidence 9 7522 3888999995 88888888655 7999999999999998 65 5666666
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHH
Q 010093 484 ALGKMAKRAVENGGSSYSDLSALIE 508 (518)
Q Consensus 484 ~l~~~~~~~~~~~g~~~~~~~~~~~ 508 (518)
+--+.+++.+.++|.+..+.+.+++
T Consensus 360 ~~~~~~~~~l~~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 360 QFFEELRQRIYCNADSERAAQAVLE 384 (385)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 6556666555566666655544443
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.65 E-value=1.7e-14 Score=146.28 Aligned_cols=139 Identities=17% Similarity=0.230 Sum_probs=98.0
Q ss_pred CCcEEEEecCCcccCCHHHHHHHHHHHHhC-CCcEEEEEcCCCCCCCCCCCCCCChhHHHHH--hcCCCcEeecCccH-H
Q 010093 313 PYSVVYVCFGSLANFTSAQLMEIATGLEAS-GRNFIWVVSKNKNDGGEGGNEDWLPEGFEKR--MEGKGLIIRGWAPQ-V 388 (518)
Q Consensus 313 ~~~vIyvslGS~~~~~~~~~~~l~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~--~~~~nv~~~~~~pq-~ 388 (518)
++++|++.-|+... .+.+..+++++... +.++++..+.+. . +-+.+... ..++|+++.+|+++ .
T Consensus 201 ~~~~il~~~G~~~~--~k~~~~li~~l~~~~~~~~viv~G~~~------~----~~~~l~~~~~~~~~~v~~~g~~~~~~ 268 (380)
T PRK13609 201 NKKILLIMAGAHGV--LGNVKELCQSLMSVPDLQVVVVCGKNE------A----LKQSLEDLQETNPDALKVFGYVENID 268 (380)
T ss_pred CCcEEEEEcCCCCC--CcCHHHHHHHHhhCCCcEEEEEeCCCH------H----HHHHHHHHHhcCCCcEEEEechhhHH
Confidence 45578777787653 23456677777654 457777765432 1 11122221 12358999999986 5
Q ss_pred HhhccCCCcccccccCchhHHHHHHhCCceecC-CcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHH
Q 010093 389 LILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTW-PVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVN 467 (518)
Q Consensus 389 ~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~-P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~ 467 (518)
+++..+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+ +..|+|+.. .+.++|.++|.
T Consensus 269 ~l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~-~~~G~~~~~------------~~~~~l~~~i~ 333 (380)
T PRK13609 269 ELFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYF-ERKGAAVVI------------RDDEEVFAKTE 333 (380)
T ss_pred HHHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHH-HhCCcEEEE------------CCHHHHHHHHH
Confidence 78988665 99999988999999999999985 6777778899888 588887753 36789999999
Q ss_pred HHhcCChHHHHHHH
Q 010093 468 EIMVGDRAEEMRSR 481 (518)
Q Consensus 468 ~ll~~~~~~~~~~~ 481 (518)
++++ +++.+++
T Consensus 334 ~ll~---~~~~~~~ 344 (380)
T PRK13609 334 ALLQ---DDMKLLQ 344 (380)
T ss_pred HHHC---CHHHHHH
Confidence 9997 5555443
No 37
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.64 E-value=1.5e-14 Score=135.44 Aligned_cols=340 Identities=13% Similarity=0.101 Sum_probs=197.0
Q ss_pred CCcEEEEEcCC--CccChHHHHHHHHHHHhC--CCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCC
Q 010093 34 PQLHVFFFPFM--AHGHMIPIVDMAKLFATR--GVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEG 109 (518)
Q Consensus 34 ~~~kIl~~~~~--~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~ 109 (518)
+++||+|+++- +.||+-.++.||++|++. |.+|++++......-+.- ..+++++.+|.-.. ...+
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~--------~~gVd~V~LPsl~k---~~~G 76 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG--------PAGVDFVKLPSLIK---GDNG 76 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC--------cccCceEecCceEe---cCCC
Confidence 56799999965 899999999999999998 999999998764443332 14688888862110 0111
Q ss_pred CCccccccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhh
Q 010093 110 CENLDAITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLA 189 (518)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~~~~~~~~~~~ 189 (518)
......... . .........+-+....+..+||++|+|.+-+.. .-+. .+...+...
T Consensus 77 ~~~~~d~~~----~----l~e~~~~Rs~lil~t~~~fkPDi~IVd~~P~Gl--r~EL-------------~ptL~yl~~- 132 (400)
T COG4671 77 EYGLVDLDG----D----LEETKKLRSQLILSTAETFKPDIFIVDKFPFGL--RFEL-------------LPTLEYLKT- 132 (400)
T ss_pred ceeeeecCC----C----HHHHHHHHHHHHHHHHHhcCCCEEEEeccccch--hhhh-------------hHHHHHHhh-
Confidence 111111100 1 111112234456667778999999999654431 0000 000001000
Q ss_pred hcCCCCCCCCCCCccccCCCCCCccccCCCCCcccccCCCCchHHHHHHHhhhhcccccEEEEcCccccc---hHHHHHH
Q 010093 190 LYEPHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELE---PAYADHY 266 (518)
Q Consensus 190 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~L~---~~~~~~~ 266 (518)
..+-.+-++. ..++.+.. ...+++-......+ + +.-+.+++...+.+. ..+ + +
T Consensus 133 -----------~~t~~vL~lr-----~i~D~p~~---~~~~w~~~~~~~~I-~--r~yD~V~v~GdP~f~d~~~~~-~-~ 188 (400)
T COG4671 133 -----------TGTRLVLGLR-----SIRDIPQE---LEADWRRAETVRLI-N--RFYDLVLVYGDPDFYDPLTEF-P-F 188 (400)
T ss_pred -----------cCCcceeehH-----hhhhchhh---hccchhhhHHHHHH-H--HhheEEEEecCccccChhhcC-C-c
Confidence 0000001111 11222211 11111111111111 1 122344443333222 111 1 1
Q ss_pred HHhhCCcEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHh-CCCc
Q 010093 267 RKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEA-SGRN 345 (518)
Q Consensus 267 ~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~-~~~~ 345 (518)
......++.|+|-+ -++-.... .+ +... +++--|+||-|--. ...+.+...++|-.. .+.+
T Consensus 189 ~~~i~~k~~ytG~v-q~~~~~~~----------~p-----~~~~-pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~ 250 (400)
T COG4671 189 APAIRAKMRYTGFV-QRSLPHLP----------LP-----PHEA-PEGFDILVSVGGGA-DGAELIETALAAAQLLAGLN 250 (400)
T ss_pred cHhhhhheeEeEEe-eccCcCCC----------CC-----CcCC-CccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCC
Confidence 22234799999987 22111000 00 1111 23447889988743 356677776666665 3444
Q ss_pred EEEEEcCCCCCCCCCCCCCCChhHHHHH-----hcCCCcEeecCccH-HHhhccCCCcccccccCchhHHHHHHhCCcee
Q 010093 346 FIWVVSKNKNDGGEGGNEDWLPEGFEKR-----MEGKGLIIRGWAPQ-VLILDHEAVGGFVTHCGWNSTLEAVAAGVPLV 419 (518)
Q Consensus 346 ~i~~~~~~~~~~~~~~~~~~lp~~~~~~-----~~~~nv~~~~~~pq-~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l 419 (518)
-.|.+-.++ ++|+.-.++ .+-+++.+..|-.+ ..++..++ .+|+-||+||++|-|.+|+|.+
T Consensus 251 ~~~~ivtGP----------~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~--~vVSm~GYNTvCeILs~~k~aL 318 (400)
T COG4671 251 HKWLIVTGP----------FMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGAR--LVVSMGGYNTVCEILSFGKPAL 318 (400)
T ss_pred cceEEEeCC----------CCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhh--eeeecccchhhhHHHhCCCceE
Confidence 355554444 367533221 24589999999875 66886654 5999999999999999999999
Q ss_pred cCCc---ccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhc
Q 010093 420 TWPV---AAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMV 471 (518)
Q Consensus 420 ~~P~---~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~ 471 (518)
++|. ..+|-.-|.|+ +++|+.-.+.+. .++++.|.+++..++.
T Consensus 319 ivPr~~p~eEQliRA~Rl-~~LGL~dvL~pe--------~lt~~~La~al~~~l~ 364 (400)
T COG4671 319 IVPRAAPREEQLIRAQRL-EELGLVDVLLPE--------NLTPQNLADALKAALA 364 (400)
T ss_pred EeccCCCcHHHHHHHHHH-HhcCcceeeCcc--------cCChHHHHHHHHhccc
Confidence 9997 34999999999 699999999887 8999999999999996
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.61 E-value=1.4e-13 Score=132.59 Aligned_cols=104 Identities=16% Similarity=0.202 Sum_probs=76.7
Q ss_pred cEEEEecCCcccCCHHHHHHHHHHHHhC--CCcEEEEEcCCCCCCCCCCCCCCChhHHHHH-hcCCCcEeecCccH-HHh
Q 010093 315 SVVYVCFGSLANFTSAQLMEIATGLEAS--GRNFIWVVSKNKNDGGEGGNEDWLPEGFEKR-MEGKGLIIRGWAPQ-VLI 390 (518)
Q Consensus 315 ~vIyvslGS~~~~~~~~~~~l~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~nv~~~~~~pq-~~l 390 (518)
+.|++++|..-. ......+++++... +.++.+++|... . ..+.+... ...+|+.+..++++ .++
T Consensus 171 ~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~~------~----~~~~l~~~~~~~~~i~~~~~~~~m~~l 238 (279)
T TIGR03590 171 RRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSSN------P----NLDELKKFAKEYPNIILFIDVENMAEL 238 (279)
T ss_pred CeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCCC------c----CHHHHHHHHHhCCCEEEEeCHHHHHHH
Confidence 478999996543 23445566777654 457778877653 1 22233322 22468999999987 589
Q ss_pred hccCCCcccccccCchhHHHHHHhCCceecCCcccccchhHHH
Q 010093 391 LDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKM 433 (518)
Q Consensus 391 L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~ 433 (518)
+..+++ +||+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 239 m~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 239 MNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 977555 999999 9999999999999999999999999874
No 39
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.58 E-value=2.6e-13 Score=137.79 Aligned_cols=165 Identities=15% Similarity=0.178 Sum_probs=108.2
Q ss_pred CCcEEEEecCCcccCCHHHHHHHHHHHHh-C-CCcEEEEEcCCCCCCCCCCCCCCChhHHHHH-hcCCCcEeecCccH-H
Q 010093 313 PYSVVYVCFGSLANFTSAQLMEIATGLEA-S-GRNFIWVVSKNKNDGGEGGNEDWLPEGFEKR-MEGKGLIIRGWAPQ-V 388 (518)
Q Consensus 313 ~~~vIyvslGS~~~~~~~~~~~l~~al~~-~-~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~nv~~~~~~pq-~ 388 (518)
++++|++..|++.. .+.+..+++++.. . +.++++..+.+. . +-+.+... ...+|+.+.+|+++ .
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~------~----l~~~l~~~~~~~~~v~~~G~~~~~~ 268 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK------E----LKRSLTAKFKSNENVLILGYTKHMN 268 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH------H----HHHHHHHHhccCCCeEEEeccchHH
Confidence 45688888898762 2445556655432 2 456766665432 1 11122221 12458899999975 5
Q ss_pred HhhccCCCcccccccCchhHHHHHHhCCceecC-CcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHH
Q 010093 389 LILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTW-PVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVN 467 (518)
Q Consensus 389 ~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~-P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~ 467 (518)
+++..+++ +|+..|..|+.||+++|+|+|+. |..+.|..|+..+ ++.|+|+.. .+.+++.++|.
T Consensus 269 ~~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~-~~~G~g~~~------------~~~~~l~~~i~ 333 (391)
T PRK13608 269 EWMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYF-EEKGFGKIA------------DTPEEAIKIVA 333 (391)
T ss_pred HHHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHH-HhCCcEEEe------------CCHHHHHHHHH
Confidence 68877665 99988888999999999999998 7666678899999 699999764 26788999999
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 010093 468 EIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEELR 511 (518)
Q Consensus 468 ~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 511 (518)
++++ +++.+ +++++.+++... ..+...-++.+++.+.
T Consensus 334 ~ll~---~~~~~---~~m~~~~~~~~~-~~s~~~i~~~l~~l~~ 370 (391)
T PRK13608 334 SLTN---GNEQL---TNMISTMEQDKI-KYATQTICRDLLDLIG 370 (391)
T ss_pred HHhc---CHHHH---HHHHHHHHHhcC-CCCHHHHHHHHHHHhh
Confidence 9997 44333 344455443322 2444444444444443
No 40
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.57 E-value=1e-12 Score=133.29 Aligned_cols=351 Identities=13% Similarity=0.084 Sum_probs=173.8
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCccc
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENLD 114 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~~ 114 (518)
+|||+|+..++.||+.|.. ++++|.++++++.+++.... .+++.. . ...+.++.++ ..
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~---~--~~~~~~~~l~--------------~~ 58 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAG---C--ESLFDMEELA--------------VM 58 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCC---C--ccccCHHHhh--------------hc
Confidence 4699999999999999998 99999999888888875331 232220 0 0001111111 00
Q ss_pred cccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCC-CccH--HHHHHHcCCCeEEEecchHHHHHHHhhhhhc
Q 010093 115 AITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTF-FPWA--TDAAAKFGIPRLVFHGTSFFSLCASNCLALY 191 (518)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~-~~~~--~~iA~~lgiP~v~~~~~~~~~~~~~~~~~~~ 191 (518)
.. . +.+..+. ........+.+++++++||+|++-.+ ..+. ...|.+.|||++......
T Consensus 59 g~--~---~~~~~~~-~~~~~~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~------------- 119 (380)
T PRK00025 59 GL--V---EVLPRLP-RLLKIRRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPS------------- 119 (380)
T ss_pred cH--H---HHHHHHH-HHHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCc-------------
Confidence 00 0 1111111 11223456778888999999886322 2233 344678899987642210
Q ss_pred CCCCCCCCCCCccccCCCCCCccccCCCCCcccccCCCCchHHHHHHHhhhhcccccEEEEcCccccchHHHHHHHHhhC
Q 010093 192 EPHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRKALG 271 (518)
Q Consensus 192 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~L~~~~~~~~~~~~~ 271 (518)
.+. . .+. ....+ .+.++.+++.+- . +... +.. .+
T Consensus 120 -----------------~~~---~----~~~---------~~~~~-------~~~~d~i~~~~~-~-~~~~---~~~-~g 153 (380)
T PRK00025 120 -----------------VWA---W----RQG---------RAFKI-------AKATDHVLALFP-F-EAAF---YDK-LG 153 (380)
T ss_pred -----------------hhh---c----Cch---------HHHHH-------HHHHhhheeCCc-c-CHHH---HHh-cC
Confidence 000 0 000 01111 112233333221 1 1111 211 22
Q ss_pred CcEEEeC-ccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHhC-----CCc
Q 010093 272 RRAWHIG-PVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEAS-----GRN 345 (518)
Q Consensus 272 ~~v~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~~-----~~~ 345 (518)
.++.++| |+....... ....++..-+.-.+++++|++..||...........+++++..+ +.+
T Consensus 154 ~~~~~~G~p~~~~~~~~-----------~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~ 222 (380)
T PRK00025 154 VPVTFVGHPLADAIPLL-----------PDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLR 222 (380)
T ss_pred CCeEEECcCHHHhcccc-----------cChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 3477888 432211000 01122222232222345666766765432122344455555433 346
Q ss_pred EEEEEcCCCCCCCCCCCCCCChhHHHHHhc---CCCcEeecCccHHHhhccCCCcccccccCchhHHHHHHhCCceecCC
Q 010093 346 FIWVVSKNKNDGGEGGNEDWLPEGFEKRME---GKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWP 422 (518)
Q Consensus 346 ~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~---~~nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P 422 (518)
++|..+.+. .-+.+..... .-++.+... .-..+++.+++ +|+-+|.+++ ||+++|+|+|+.|
T Consensus 223 ~ii~~~~~~-----------~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~ 287 (380)
T PRK00025 223 FVLPLVNPK-----------RREQIEEALAEYAGLEVTLLDG-QKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGY 287 (380)
T ss_pred EEEecCChh-----------hHHHHHHHHhhcCCCCeEEEcc-cHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEE
Confidence 777654222 1112222111 113333221 23667877555 9999998777 9999999999985
Q ss_pred cccccc--------hh-----HHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010093 423 VAAEQF--------YN-----EKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMA 489 (518)
Q Consensus 423 ~~~DQ~--------~n-----a~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~ 489 (518)
...-.+ .| +..+ ...+++..+... ..+++.|.+++.++++ |++.+++..+-.+.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~--------~~~~~~l~~~i~~ll~---~~~~~~~~~~~~~~~ 355 (380)
T PRK00025 288 KVSPLTFWIAKRLVKVPYVSLPNLL-AGRELVPELLQE--------EATPEKLARALLPLLA---DGARRQALLEGFTEL 355 (380)
T ss_pred ccCHHHHHHHHHHHcCCeeehHHHh-cCCCcchhhcCC--------CCCHHHHHHHHHHHhc---CHHHHHHHHHHHHHH
Confidence 432111 11 2222 123333334333 6789999999999998 666666555544444
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHh
Q 010093 490 KRAVENGGSSYSDLSALIEELRL 512 (518)
Q Consensus 490 ~~~~~~~g~~~~~~~~~~~~~~~ 512 (518)
++.+ ..|.+ ..+.++|..+..
T Consensus 356 ~~~~-~~~a~-~~~~~~i~~~~~ 376 (380)
T PRK00025 356 HQQL-RCGAD-ERAAQAVLELLK 376 (380)
T ss_pred HHHh-CCCHH-HHHHHHHHHHhh
Confidence 4333 33433 334444444433
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.44 E-value=1.2e-14 Score=129.38 Aligned_cols=135 Identities=18% Similarity=0.207 Sum_probs=95.2
Q ss_pred EEEEecCCcccCC-HHHHHHHHHHHHh--CCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCcc-HHHhh
Q 010093 316 VVYVCFGSLANFT-SAQLMEIATGLEA--SGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAP-QVLIL 391 (518)
Q Consensus 316 vIyvslGS~~~~~-~~~~~~l~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~p-q~~lL 391 (518)
+|+|+.||..... .+.+..+.+.+.. ...++++.+|... .+. ....+ .....|+.+.+|++ ..+++
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~----~~~----~~~~~--~~~~~~v~~~~~~~~m~~~m 70 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNN----YEE----LKIKV--ENFNPNVKVFGFVDNMAELM 70 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCE----CHH----HCCCH--CCTTCCCEEECSSSSHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCc----HHH----HHHHH--hccCCcEEEEechhhHHHHH
Confidence 4889999876410 1122223333333 2578999988754 000 00000 01126899999999 88999
Q ss_pred ccCCCcccccccCchhHHHHHHhCCceecCCccc----ccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHH
Q 010093 392 DHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAA----EQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVN 467 (518)
Q Consensus 392 ~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~----DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~ 467 (518)
..+++ +|||||.||++|++++|+|+|++|... +|..||..+ ++.|+|..+... ..+.+.|.++|.
T Consensus 71 ~~aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~-~~~g~~~~~~~~--------~~~~~~L~~~i~ 139 (167)
T PF04101_consen 71 AAADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKEL-AKKGAAIMLDES--------ELNPEELAEAIE 139 (167)
T ss_dssp HHHSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHH-HHCCCCCCSECC--------C-SCCCHHHHHH
T ss_pred HHcCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHH-HHcCCccccCcc--------cCCHHHHHHHHH
Confidence 88665 999999999999999999999999988 999999999 599999999876 778999999999
Q ss_pred HHhc
Q 010093 468 EIMV 471 (518)
Q Consensus 468 ~ll~ 471 (518)
+++.
T Consensus 140 ~l~~ 143 (167)
T PF04101_consen 140 ELLS 143 (167)
T ss_dssp CHCC
T ss_pred HHHc
Confidence 9997
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.43 E-value=5.6e-11 Score=120.48 Aligned_cols=132 Identities=20% Similarity=0.157 Sum_probs=90.2
Q ss_pred CCCcEEEEecCCcccCCHHHHHHHHHHHHh---------CCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEee
Q 010093 312 QPYSVVYVCFGSLANFTSAQLMEIATGLEA---------SGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIR 382 (518)
Q Consensus 312 ~~~~vIyvslGS~~~~~~~~~~~l~~al~~---------~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~ 382 (518)
+++++|++.-|+... +.+..+++++.. .+.++++..|.+. . +=+.+.......++++.
T Consensus 204 ~~~~~il~~Gg~~g~---~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~------~----~~~~L~~~~~~~~v~~~ 270 (382)
T PLN02605 204 EDLPAVLLMGGGEGM---GPLEETARALGDSLYDKNLGKPIGQVVVICGRNK------K----LQSKLESRDWKIPVKVR 270 (382)
T ss_pred CCCcEEEEECCCccc---ccHHHHHHHHHHhhccccccCCCceEEEEECCCH------H----HHHHHHhhcccCCeEEE
Confidence 345677776666543 223334444432 2356677776543 1 11122221123478888
Q ss_pred cCccH-HHhhccCCCcccccccCchhHHHHHHhCCceecCCcccccc-hhHHHHHHhhhcceeeccccccccccCccChH
Q 010093 383 GWAPQ-VLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQF-YNEKMVNEILKIGVGVGIQKWCRIVGDFVKRE 460 (518)
Q Consensus 383 ~~~pq-~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~-~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~ 460 (518)
+|+++ .+++..+++ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+. +.|.|+.+ .+++
T Consensus 271 G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~-~~g~g~~~------------~~~~ 335 (382)
T PLN02605 271 GFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVV-DNGFGAFS------------ESPK 335 (382)
T ss_pred eccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHH-hCCceeec------------CCHH
Confidence 99985 678877555 999999999999999999999998766675 7998884 88888753 3789
Q ss_pred HHHHHHHHHhc
Q 010093 461 TIEKAVNEIMV 471 (518)
Q Consensus 461 ~l~~av~~ll~ 471 (518)
+|.++|.+++.
T Consensus 336 ~la~~i~~ll~ 346 (382)
T PLN02605 336 EIARIVAEWFG 346 (382)
T ss_pred HHHHHHHHHHc
Confidence 99999999997
No 43
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.35 E-value=6e-09 Score=108.56 Aligned_cols=155 Identities=21% Similarity=0.191 Sum_probs=94.2
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHhCC-CcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHH---hh
Q 010093 316 VVYVCFGSLANFTSAQLMEIATGLEASG-RNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVL---IL 391 (518)
Q Consensus 316 vIyvslGS~~~~~~~~~~~l~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~---lL 391 (518)
.+++..|++. ..+.+..++++++..+ .++++ +|.+. .-+.+.......|+.+.+++|+.+ ++
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~i-vG~G~-----------~~~~l~~~~~~~~V~f~G~v~~~ev~~~~ 329 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLAF-VGDGP-----------YREELEKMFAGTPTVFTGMLQGDELSQAY 329 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEE-EeCCh-----------HHHHHHHHhccCCeEEeccCCHHHHHHHH
Confidence 4456668764 3555677788888764 45444 44433 112333333456899999998654 67
Q ss_pred ccCCCcccccc----cCchhHHHHHHhCCceecCCcccccchhHHHHHHh---hhcceeeccccccccccCccChHHHHH
Q 010093 392 DHEAVGGFVTH----CGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEI---LKIGVGVGIQKWCRIVGDFVKRETIEK 464 (518)
Q Consensus 392 ~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~---~G~G~~l~~~~~~~~~~~~~~~~~l~~ 464 (518)
..+++ ||.- |-..++.||+++|+|+|+.... .....+ +. -+.|..+.. -+.+++.+
T Consensus 330 ~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv-~~~~~~~~G~lv~~----------~d~~~la~ 392 (465)
T PLN02871 330 ASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDII-PPDQEGKTGFLYTP----------GDVDDCVE 392 (465)
T ss_pred HHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhh-hcCCCCCceEEeCC----------CCHHHHHH
Confidence 66665 6632 2235799999999999986543 233344 44 577888754 37899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 010093 465 AVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIE 508 (518)
Q Consensus 465 av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 508 (518)
+|.++++ +++.+++. ++..++.++ ..+-....+.+.+
T Consensus 393 ~i~~ll~---~~~~~~~~---~~~a~~~~~-~fsw~~~a~~l~~ 429 (465)
T PLN02871 393 KLETLLA---DPELRERM---GAAAREEVE-KWDWRAATRKLRN 429 (465)
T ss_pred HHHHHHh---CHHHHHHH---HHHHHHHHH-hCCHHHHHHHHHH
Confidence 9999997 54544333 333332222 3454444455543
No 44
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.29 E-value=1.2e-09 Score=110.63 Aligned_cols=142 Identities=18% Similarity=0.134 Sum_probs=91.9
Q ss_pred CCcEEEEecCCcccCCHHHHHHHHHHHHhC----CCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhc-------------
Q 010093 313 PYSVVYVCFGSLANFTSAQLMEIATGLEAS----GRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRME------------- 375 (518)
Q Consensus 313 ~~~vIyvslGS~~~~~~~~~~~l~~al~~~----~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~------------- 375 (518)
++++|.+--||...-....+..+++++..+ +..|++.+.+.. + .+ .+.....
T Consensus 204 ~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~------~----~~-~~~~~l~~~g~~~~~~~~~~ 272 (396)
T TIGR03492 204 GRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSL------S----LE-KLQAILEDLGWQLEGSSEDQ 272 (396)
T ss_pred CCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCC------C----HH-HHHHHHHhcCceecCCcccc
Confidence 345788888887543333344566666654 567888874433 1 11 1111100
Q ss_pred -----CCCcEeecCcc-HHHhhccCCCcccccccCchhHHHHHHhCCceecCCcccccchhHHHHHHhh----hcceeec
Q 010093 376 -----GKGLIIRGWAP-QVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEIL----KIGVGVG 445 (518)
Q Consensus 376 -----~~nv~~~~~~p-q~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~----G~G~~l~ 445 (518)
.+++.+..+.. ..++++.+++ +|+-.|..| .|++.+|+|+|++|.-..|. ||... ++. |.++.+.
T Consensus 273 ~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~-~~~~~l~g~~~~l~ 347 (396)
T TIGR03492 273 TSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFA-EAQSRLLGGSVFLA 347 (396)
T ss_pred chhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHH-HhhHhhcCCEEecC
Confidence 12355544543 4678877555 999999766 99999999999999766676 98777 454 7666664
Q ss_pred cccccccccCccChHHHHHHHHHHhcCChHHHHHHHHH
Q 010093 446 IQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAK 483 (518)
Q Consensus 446 ~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~ 483 (518)
. .+.+.|.+++.++++ |+..+++..
T Consensus 348 ~----------~~~~~l~~~l~~ll~---d~~~~~~~~ 372 (396)
T TIGR03492 348 S----------KNPEQAAQVVRQLLA---DPELLERCR 372 (396)
T ss_pred C----------CCHHHHHHHHHHHHc---CHHHHHHHH
Confidence 3 355999999999997 555554333
No 45
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.28 E-value=5.1e-12 Score=108.75 Aligned_cols=124 Identities=18% Similarity=0.241 Sum_probs=78.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCcccccc
Q 010093 38 VFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENLDAIT 117 (518)
Q Consensus 38 Il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~~~~~ 117 (518)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+.+. ++.|..++.. ..++.........
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~---------Gl~~~~~~~~---~~~~~~~~~~~~~- 67 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA---------GLEFVPIPGD---SRLPRSLEPLANL- 67 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT---------T-EEEESSSC---GGGGHHHHHHHHH-
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc---------CceEEEecCC---cCcCcccchhhhh-
Confidence 78999999999999999999999999999999999998888655 6777777522 0000000000000
Q ss_pred chhhhhhHHHHHHHHHhhHHHHHHHH--------hhCCCCEEEecCCCccHHHHHHHcCCCeEEEecchH
Q 010093 118 NEVNKGLIVKFFGATMKLQEPLEQLL--------QEHKPDCLVADTFFPWATDAAAKFGIPRLVFHGTSF 179 (518)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~ll--------~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~ 179 (518)
..............+.+.+.. .....|+++.+.....+..+|+++|||++.....+.
T Consensus 68 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 68 -----RRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp -----HCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred -----hhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 001111111111122222211 124688888898777899999999999999877653
No 46
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.24 E-value=2.4e-08 Score=99.95 Aligned_cols=154 Identities=20% Similarity=0.164 Sum_probs=93.2
Q ss_pred cEEEEecCCcccCCHHHHHHHHHHHHhC----CCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHH-
Q 010093 315 SVVYVCFGSLANFTSAQLMEIATGLEAS----GRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVL- 389 (518)
Q Consensus 315 ~vIyvslGS~~~~~~~~~~~l~~al~~~----~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~- 389 (518)
..+++..|++.. .+....++++++.+ +.++++. |.+. ..+.+. ...+|+.+.+|+++.+
T Consensus 197 ~~~i~~~G~~~~--~k~~~~~i~~~~~l~~~~~~~l~i~-G~~~-----------~~~~~~--~~~~~v~~~g~~~~~~~ 260 (364)
T cd03814 197 RPVLLYVGRLAP--EKNLEALLDADLPLRRRPPVRLVIV-GDGP-----------ARARLE--ARYPNVHFLGFLDGEEL 260 (364)
T ss_pred CeEEEEEecccc--ccCHHHHHHHHHHhhhcCCceEEEE-eCCc-----------hHHHHh--ccCCcEEEEeccCHHHH
Confidence 356677777543 33344455555554 3344444 3332 011111 2356999999999765
Q ss_pred --hhccCCCcccccccC----chhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHH
Q 010093 390 --ILDHEAVGGFVTHCG----WNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIE 463 (518)
Q Consensus 390 --lL~~~~~~~~ItHgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~ 463 (518)
++..+++ +|..+. .+++.||+++|+|+|+.+.. .+...+ +..+.|..+.. .+.+++.
T Consensus 261 ~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i-~~~~~g~~~~~----------~~~~~l~ 323 (364)
T cd03814 261 AAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIV-TDGENGLLVEP----------GDAEAFA 323 (364)
T ss_pred HHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----Cchhhh-cCCcceEEcCC----------CCHHHHH
Confidence 6766554 776543 47899999999999987754 355566 46688887754 4778899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 010093 464 KAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIE 508 (518)
Q Consensus 464 ~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 508 (518)
+++.+++. +++.+++.. +..++.+ +..+.+...+.+++
T Consensus 324 ~~i~~l~~---~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~ 361 (364)
T cd03814 324 AALAALLA---DPELRRRMA---ARARAEA-ERRSWEAFLDNLLE 361 (364)
T ss_pred HHHHHHHc---CHHHHHHHH---HHHHHHH-hhcCHHHHHHHHHH
Confidence 99999997 545544333 3333222 23454444455444
No 47
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.16 E-value=7e-09 Score=94.91 Aligned_cols=141 Identities=18% Similarity=0.210 Sum_probs=99.1
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHH-hcCCCcEeecCcc-HHHhhcc
Q 010093 316 VVYVCFGSLANFTSAQLMEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKR-MEGKGLIIRGWAP-QVLILDH 393 (518)
Q Consensus 316 vIyvslGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~nv~~~~~~p-q~~lL~~ 393 (518)
-|+|++|-.- +......++..+.+-++.+-.+++... + . + .+...+ .+.+|+...-... ...|+..
T Consensus 160 ~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~~----p-~----l-~~l~k~~~~~~~i~~~~~~~dma~LMke 227 (318)
T COG3980 160 DILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSSN----P-T----L-KNLRKRAEKYPNINLYIDTNDMAELMKE 227 (318)
T ss_pred eEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCCC----c-c----h-hHHHHHHhhCCCeeeEecchhHHHHHHh
Confidence 5899998742 333556677778777766666666432 1 2 2 122221 2356766655554 5668877
Q ss_pred CCCcccccccCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCC
Q 010093 394 EAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGD 473 (518)
Q Consensus 394 ~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~ 473 (518)
+++ .|+.||. |+.|++..|+|.+++|+...|.--|... +.+|+-..+.. .++++.+..-+.++..
T Consensus 228 ~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f-~~lg~~~~l~~---------~l~~~~~~~~~~~i~~-- 292 (318)
T COG3980 228 ADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEF-EALGIIKQLGY---------HLKDLAKDYEILQIQK-- 292 (318)
T ss_pred cch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHH-HhcCchhhccC---------CCchHHHHHHHHHhhh--
Confidence 554 9999876 9999999999999999999999999999 58888877755 3677888888888887
Q ss_pred hHHHHHHHHHH
Q 010093 474 RAEEMRSRAKA 484 (518)
Q Consensus 474 ~~~~~~~~a~~ 484 (518)
|...|.+...
T Consensus 293 -d~~~rk~l~~ 302 (318)
T COG3980 293 -DYARRKNLSF 302 (318)
T ss_pred -CHHHhhhhhh
Confidence 4455554433
No 48
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.15 E-value=7.8e-08 Score=95.97 Aligned_cols=135 Identities=16% Similarity=0.092 Sum_probs=82.8
Q ss_pred CcEEEEecCCcccCCHHHHHHHHHHHHhC---CCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHH-
Q 010093 314 YSVVYVCFGSLANFTSAQLMEIATGLEAS---GRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVL- 389 (518)
Q Consensus 314 ~~vIyvslGS~~~~~~~~~~~l~~al~~~---~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~- 389 (518)
...+++..|++.. .+....++++++.+ +.++++. |... . ...........+|+.+.+|+++.+
T Consensus 190 ~~~~i~~~G~~~~--~k~~~~li~~~~~l~~~~~~l~i~-G~~~------~----~~~~~~~~~~~~~v~~~g~~~~~~~ 256 (359)
T cd03823 190 GRLRFGFIGQLTP--HKGVDLLLEAFKRLPRGDIELVIV-GNGL------E----LEEESYELEGDPRVEFLGAYPQEEI 256 (359)
T ss_pred CceEEEEEecCcc--ccCHHHHHHHHHHHHhcCcEEEEE-cCch------h----hhHHHHhhcCCCeEEEeCCCCHHHH
Confidence 3466677787653 33444555665554 4555444 3322 0 000000012347899999997654
Q ss_pred --hhccCCCccccc----ccC-chhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHH
Q 010093 390 --ILDHEAVGGFVT----HCG-WNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETI 462 (518)
Q Consensus 390 --lL~~~~~~~~It----HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l 462 (518)
++..+++ +|. ..| ..++.||+++|+|+|+.+. ..+...+ +..+.|..+.. .+.+++
T Consensus 257 ~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~~----------~d~~~l 319 (359)
T cd03823 257 DDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELV-RDGVNGLLFPP----------GDAEDL 319 (359)
T ss_pred HHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHh-cCCCcEEEECC----------CCHHHH
Confidence 5766665 662 233 3589999999999998654 3456666 45557877754 368999
Q ss_pred HHHHHHHhcCChHHHHHHH
Q 010093 463 EKAVNEIMVGDRAEEMRSR 481 (518)
Q Consensus 463 ~~av~~ll~~~~~~~~~~~ 481 (518)
.+++.++++ ++..++.
T Consensus 320 ~~~i~~l~~---~~~~~~~ 335 (359)
T cd03823 320 AAALERLID---DPDLLER 335 (359)
T ss_pred HHHHHHHHh---ChHHHHH
Confidence 999999997 4444433
No 49
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.13 E-value=1.5e-07 Score=96.12 Aligned_cols=103 Identities=20% Similarity=0.130 Sum_probs=67.1
Q ss_pred CCCcEeecCccHHH---hhccCCCcccccc-cC-chhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeecccccc
Q 010093 376 GKGLIIRGWAPQVL---ILDHEAVGGFVTH-CG-WNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWC 450 (518)
Q Consensus 376 ~~nv~~~~~~pq~~---lL~~~~~~~~ItH-gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~ 450 (518)
.++|++.+++|+.+ ++..+++-++.+. .| ..++.||+++|+|+|+.. .......+ +.-..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i-~~~~~G~lv~~---- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVI-TDGENGLLVDF---- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhc-ccCCceEEcCC----
Confidence 57899999999765 5666666333232 23 248999999999999864 34455556 34446776654
Q ss_pred ccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCc
Q 010093 451 RIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSS 499 (518)
Q Consensus 451 ~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~ 499 (518)
.+++++.++|.++++ +++.++ ++++..++.+++..+-
T Consensus 351 ------~d~~~la~~i~~ll~---~~~~~~---~l~~~ar~~~~~~fs~ 387 (396)
T cd03818 351 ------FDPDALAAAVIELLD---DPARRA---RLRRAARRTALRYDLL 387 (396)
T ss_pred ------CCHHHHHHHHHHHHh---CHHHHH---HHHHHHHHHHHHhccH
Confidence 479999999999997 544333 3444444444444443
No 50
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.12 E-value=6.7e-08 Score=98.45 Aligned_cols=158 Identities=16% Similarity=0.107 Sum_probs=91.3
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHhC-----CCcEEEEEcCCCCCCCCCCCCCCChhH---HHHH-hcCCCcEeecCcc
Q 010093 316 VVYVCFGSLANFTSAQLMEIATGLEAS-----GRNFIWVVSKNKNDGGEGGNEDWLPEG---FEKR-MEGKGLIIRGWAP 386 (518)
Q Consensus 316 vIyvslGS~~~~~~~~~~~l~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~lp~~---~~~~-~~~~nv~~~~~~p 386 (518)
.+++..|++.. .+....+++++..+ +.++++..+... ......... +... ...+|+.+.+|+|
T Consensus 221 ~~i~~~gr~~~--~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~ 292 (398)
T cd03800 221 PRILAVGRLDP--RKGIDTLIRAYAELPELRERANLVIVGGPRD------DILAMDEEELRELARELGVIDRVDFPGRVS 292 (398)
T ss_pred cEEEEEccccc--ccCHHHHHHHHHHHHHhCCCeEEEEEECCCC------cchhhhhHHHHHHHHhcCCCceEEEeccCC
Confidence 56677787653 33445556666544 345555544322 100000011 1111 1246899999999
Q ss_pred HHH---hhccCCCcccccc----cCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccCh
Q 010093 387 QVL---ILDHEAVGGFVTH----CGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKR 459 (518)
Q Consensus 387 q~~---lL~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~ 459 (518)
+.+ ++..+++ ++.. |-..++.||+++|+|+|+.... .....+ +..+.|..++. .+.
T Consensus 293 ~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i-~~~~~g~~~~~----------~~~ 355 (398)
T cd03800 293 REDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIV-VDGVTGLLVDP----------RDP 355 (398)
T ss_pred HHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHc-cCCCCeEEeCC----------CCH
Confidence 765 4766555 6633 3246899999999999976643 345556 46667887754 479
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 010093 460 ETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLS 504 (518)
Q Consensus 460 ~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~ 504 (518)
+++.++|.++++ +++.+ +++++..++.+.+..+-+...+
T Consensus 356 ~~l~~~i~~l~~---~~~~~---~~~~~~a~~~~~~~~s~~~~~~ 394 (398)
T cd03800 356 EALAAALRRLLT---DPALR---RRLSRAGLRRARARYTWERVAA 394 (398)
T ss_pred HHHHHHHHHHHh---CHHHH---HHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999997 43333 2333333333344455444333
No 51
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.09 E-value=3.5e-07 Score=92.24 Aligned_cols=161 Identities=13% Similarity=0.127 Sum_probs=91.4
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHh----CCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHh-cCCCcEeecCccH-HH
Q 010093 316 VVYVCFGSLANFTSAQLMEIATGLEA----SGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRM-EGKGLIIRGWAPQ-VL 389 (518)
Q Consensus 316 vIyvslGS~~~~~~~~~~~l~~al~~----~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~pq-~~ 389 (518)
.+++.+|.+.. .+.+..+++++.. .+.++++.- .+. +... + .....+. ..+++.+.++.++ ..
T Consensus 198 ~~il~~g~l~~--~K~~~~li~a~~~l~~~~~~~l~i~G-~g~------~~~~-~-~~~~~~~~~~~~v~~~g~~~~~~~ 266 (371)
T cd04962 198 KVLIHISNFRP--VKRIDDVIRIFAKVRKEVPARLLLVG-DGP------ERSP-A-ERLARELGLQDDVLFLGKQDHVEE 266 (371)
T ss_pred eEEEEeccccc--ccCHHHHHHHHHHHHhcCCceEEEEc-CCc------CHHH-H-HHHHHHcCCCceEEEecCcccHHH
Confidence 56677777653 4445555555543 245555553 322 1000 1 1111111 2457888888774 56
Q ss_pred hhccCCCcccc----cccCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHH
Q 010093 390 ILDHEAVGGFV----THCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKA 465 (518)
Q Consensus 390 lL~~~~~~~~I----tHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~a 465 (518)
++..+++ +| +-|...++.||+++|+|+|+... ...+..+ +.-..|..++. .+.+++.++
T Consensus 267 ~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i-~~~~~G~~~~~----------~~~~~l~~~ 329 (371)
T cd04962 267 LLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVV-KHGETGFLVDV----------GDVEAMAEY 329 (371)
T ss_pred HHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhh-cCCCceEEcCC----------CCHHHHHHH
Confidence 7877555 55 22335699999999999998544 3455555 35456766643 478999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 010093 466 VNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEEL 510 (518)
Q Consensus 466 v~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 510 (518)
+.++++ ++..+++ +++..++.+.+..+.+.-++++.+..
T Consensus 330 i~~l~~---~~~~~~~---~~~~~~~~~~~~fs~~~~~~~~~~~y 368 (371)
T cd04962 330 ALSLLE---DDELWQE---FSRAARNRAAERFDSERIVPQYEALY 368 (371)
T ss_pred HHHHHh---CHHHHHH---HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999997 4444333 33333333234455555555555443
No 52
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.07 E-value=3.5e-07 Score=93.77 Aligned_cols=123 Identities=11% Similarity=0.005 Sum_probs=70.1
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCcc
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENL 113 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~ 113 (518)
++.||.++.....|+-..+..+|+.|+++||+|++++........+.. .+.++.++.++.+. . ..
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~------~~~~v~~~~~~~~~-------~--~~ 66 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEIL------SNPNITIHPLPPPP-------Q--RL 66 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHh------cCCCEEEEECCCCc-------c--cc
Confidence 445777777777888889999999999999999999875422111101 12356666654211 0 00
Q ss_pred ccccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecC-CCc----cHHHHHHHcCCCeEEEec
Q 010093 114 DAITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADT-FFP----WATDAAAKFGIPRLVFHG 176 (518)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~-~~~----~~~~iA~~lgiP~v~~~~ 176 (518)
.... ..+..+..........+..++...+||+|++.. ... .+..++...++|+|..+.
T Consensus 67 ~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h 129 (415)
T cd03816 67 NKLP-----FLLFAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWH 129 (415)
T ss_pred ccch-----HHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcC
Confidence 0000 111122222222233344456667899999853 221 244456678999887544
No 53
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.07 E-value=2.5e-07 Score=92.74 Aligned_cols=78 Identities=21% Similarity=0.204 Sum_probs=57.5
Q ss_pred CCCcEeecCccHHH---hhccCCCcccccc----cCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeecccc
Q 010093 376 GKGLIIRGWAPQVL---ILDHEAVGGFVTH----CGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQK 448 (518)
Q Consensus 376 ~~nv~~~~~~pq~~---lL~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~ 448 (518)
.+|+.+.+++|+.+ ++..+++ +|.- |...++.||+++|+|+|+... ...+..+ +..+.|..+...
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i-~~~~~g~~~~~~- 329 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLV-ADGENGFLFPPG- 329 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhhe-ecCceeEEeCCC-
Confidence 56899999999755 5767665 5532 345789999999999998653 3455566 465778887553
Q ss_pred ccccccCccChHHHHHHHHHHhc
Q 010093 449 WCRIVGDFVKRETIEKAVNEIMV 471 (518)
Q Consensus 449 ~~~~~~~~~~~~~l~~av~~ll~ 471 (518)
+. ++.+++.++++
T Consensus 330 ---------~~-~~~~~i~~l~~ 342 (374)
T cd03817 330 ---------DE-ALAEALLRLLQ 342 (374)
T ss_pred ---------CH-HHHHHHHHHHh
Confidence 22 89999999997
No 54
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.06 E-value=2.2e-07 Score=93.52 Aligned_cols=134 Identities=19% Similarity=0.176 Sum_probs=81.6
Q ss_pred CcEEEEecCCcccCCHHHHHHHHHHHHhC----CCcEEEEEcCCCCCCCCCCCCCCChhHHH---HHhcCCCcEeecCcc
Q 010093 314 YSVVYVCFGSLANFTSAQLMEIATGLEAS----GRNFIWVVSKNKNDGGEGGNEDWLPEGFE---KRMEGKGLIIRGWAP 386 (518)
Q Consensus 314 ~~vIyvslGS~~~~~~~~~~~l~~al~~~----~~~~i~~~~~~~~~~~~~~~~~~lp~~~~---~~~~~~nv~~~~~~p 386 (518)
+..+++..|+... .+....+++++..+ +.++++ ++.+. ..+.+. .....+|+.+.++++
T Consensus 219 ~~~~i~~~G~~~~--~k~~~~l~~~~~~l~~~~~~~l~i-~G~~~-----------~~~~~~~~~~~~~~~~v~~~g~~~ 284 (394)
T cd03794 219 DKFVVLYAGNIGR--AQGLDTLLEAAALLKDRPDIRFLI-VGDGP-----------EKEELKELAKALGLDNVTFLGRVP 284 (394)
T ss_pred CcEEEEEecCccc--ccCHHHHHHHHHHHhhcCCeEEEE-eCCcc-----------cHHHHHHHHHHcCCCcEEEeCCCC
Confidence 3467777887654 33344444555443 344443 34332 111222 223457999999998
Q ss_pred HHH---hhccCCCcccccccC---------chhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeecccccccccc
Q 010093 387 QVL---ILDHEAVGGFVTHCG---------WNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVG 454 (518)
Q Consensus 387 q~~---lL~~~~~~~~ItHgG---------~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~ 454 (518)
+.+ ++..+++ +|.... .+++.||+++|+|+|+.+..+.+. .+ ...+.|..+..
T Consensus 285 ~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~-~~~~~g~~~~~-------- 349 (394)
T cd03794 285 KEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LV-EEAGAGLVVPP-------- 349 (394)
T ss_pred hHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hh-ccCCcceEeCC--------
Confidence 654 5666555 553222 234799999999999988765433 33 24466777644
Q ss_pred CccChHHHHHHHHHHhcCChHHHHHHH
Q 010093 455 DFVKRETIEKAVNEIMVGDRAEEMRSR 481 (518)
Q Consensus 455 ~~~~~~~l~~av~~ll~~~~~~~~~~~ 481 (518)
.+.+++.++|.+++. ++..+++
T Consensus 350 --~~~~~l~~~i~~~~~---~~~~~~~ 371 (394)
T cd03794 350 --GDPEALAAAILELLD---DPEERAE 371 (394)
T ss_pred --CCHHHHHHHHHHHHh---ChHHHHH
Confidence 378999999999997 4444443
No 55
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.05 E-value=1.4e-06 Score=89.47 Aligned_cols=165 Identities=16% Similarity=0.129 Sum_probs=102.6
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHhCC----CcEEEEEcCCCCCCCCCCCCCCChhHHH---HHhcCCCcEeecCccHH
Q 010093 316 VVYVCFGSLANFTSAQLMEIATGLEASG----RNFIWVVSKNKNDGGEGGNEDWLPEGFE---KRMEGKGLIIRGWAPQV 388 (518)
Q Consensus 316 vIyvslGS~~~~~~~~~~~l~~al~~~~----~~~i~~~~~~~~~~~~~~~~~~lp~~~~---~~~~~~nv~~~~~~pq~ 388 (518)
.+++..|++. ..+.+..++++++.+. .+++ .+|.+. ..+.+. .+...+|+.+.+|+|+.
T Consensus 230 ~~i~~~G~l~--~~kg~~~li~a~~~l~~~~~~~l~-ivG~g~-----------~~~~l~~~~~~~~l~~v~f~G~~~~~ 295 (412)
T PRK10307 230 KIVLYSGNIG--EKQGLELVIDAARRLRDRPDLIFV-ICGQGG-----------GKARLEKMAQCRGLPNVHFLPLQPYD 295 (412)
T ss_pred EEEEEcCccc--cccCHHHHHHHHHHhccCCCeEEE-EECCCh-----------hHHHHHHHHHHcCCCceEEeCCCCHH
Confidence 5666678775 4455666777776542 3333 344333 112222 22234589999999865
Q ss_pred H---hhccCCCcccccccCc------hhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccCh
Q 010093 389 L---ILDHEAVGGFVTHCGW------NSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKR 459 (518)
Q Consensus 389 ~---lL~~~~~~~~ItHgG~------~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~ 459 (518)
+ ++..+++-++.+..+. +.+.|++++|+|+|+....+. .....+ + +.|+.++. .+.
T Consensus 296 ~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i-~--~~G~~~~~----------~d~ 360 (412)
T PRK10307 296 RLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLV-E--GIGVCVEP----------ESV 360 (412)
T ss_pred HHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHH-h--CCcEEeCC----------CCH
Confidence 4 6777776444444332 246899999999999865431 112333 3 77888754 478
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhhc
Q 010093 460 ETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEELRLSRH 515 (518)
Q Consensus 460 ~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 515 (518)
++|.++|.++++ ++..+ .++++..++.+++..+....++.+++.+++.-+
T Consensus 361 ~~la~~i~~l~~---~~~~~---~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 410 (412)
T PRK10307 361 EALVAAIAALAR---QALLR---PKLGTVAREYAERTLDKENVLRQFIADIRGLVA 410 (412)
T ss_pred HHHHHHHHHHHh---CHHHH---HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhc
Confidence 999999999997 44433 445555555556677777777777777765543
No 56
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.04 E-value=4e-07 Score=90.66 Aligned_cols=338 Identities=20% Similarity=0.130 Sum_probs=173.5
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCccccccchhhhhhH
Q 010093 46 HGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENLDAITNEVNKGLI 125 (518)
Q Consensus 46 ~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~~~~~~~~~~~~~ 125 (518)
.|+...+..+++.|.+.||+|++++........... ..... .... ... ..
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~------------~~~~~------~~~~---~~~--------~~- 63 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGGLPDEEE------------VGGIV------VVRP---PPL--------LR- 63 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceee------------ecCcc------eecC---Ccc--------cc-
Confidence 689999999999999999999999986543221110 00000 0000 000 00
Q ss_pred HHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCccHH--HHHHHcCCCeEEEecchHHHHHHHhhhhhcCCCCCCCCCCCc
Q 010093 126 VKFFGATMKLQEPLEQLLQEHKPDCLVADTFFPWAT--DAAAKFGIPRLVFHGTSFFSLCASNCLALYEPHKKVSSDSEP 203 (518)
Q Consensus 126 ~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~~~~--~iA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (518)
.............+..+++..++|+|++........ ..+...++|++..........
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~--------------------- 122 (374)
T cd03801 64 VRRLLLLLLLALRLRRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGR--------------------- 122 (374)
T ss_pred cchhHHHHHHHHHHHHHhhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhc---------------------
Confidence 000111112233556667778999999997666433 578889999987655321110
Q ss_pred cccCCCCCCccccCCCCCcccccCCCCchHHHHHHHhhhhcccccEEEEcCccccchHHHHHHHHhhC---CcEEEeCcc
Q 010093 204 FVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRKALG---RRAWHIGPV 280 (518)
Q Consensus 204 ~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~L~~~~~~~~~~~~~---~~v~~vGpl 280 (518)
... . ... ................+.+++.+.... ..+....+ .++..++.-
T Consensus 123 -----~~~----~----~~~--------~~~~~~~~~~~~~~~~d~~i~~s~~~~-----~~~~~~~~~~~~~~~~i~~~ 176 (374)
T cd03801 123 -----PGN----E----LGL--------LLKLARALERRALRRADRIIAVSEATR-----EELRELGGVPPEKITVIPNG 176 (374)
T ss_pred -----ccc----c----hhH--------HHHHHHHHHHHHHHhCCEEEEecHHHH-----HHHHhcCCCCCCcEEEecCc
Confidence 000 0 000 000111111222345566666553222 22333222 255555532
Q ss_pred ccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHhCCC---cE-EEEEcCCCCC
Q 010093 281 SLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEASGR---NF-IWVVSKNKND 356 (518)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~~~~---~~-i~~~~~~~~~ 356 (518)
..... .. . .......-... ..+..+++.+|+.. ..+.+..+++++..+.. .+ ++.++.+.
T Consensus 177 ~~~~~-~~--------~--~~~~~~~~~~~-~~~~~~i~~~g~~~--~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~-- 240 (374)
T cd03801 177 VDTER-FR--------P--APRAARRRLGI-PEDEPVILFVGRLV--PRKGVDLLLEALAKLRKEYPDVRLVIVGDGP-- 240 (374)
T ss_pred ccccc-cC--------c--cchHHHhhcCC-cCCCeEEEEecchh--hhcCHHHHHHHHHHHhhhcCCeEEEEEeCcH--
Confidence 22110 00 0 00111111111 12335667778765 34445556666654322 22 23333322
Q ss_pred CCCCCCCCCChhHHHH----HhcCCCcEeecCccHH---HhhccCCCccccc----ccCchhHHHHHHhCCceecCCccc
Q 010093 357 GGEGGNEDWLPEGFEK----RMEGKGLIIRGWAPQV---LILDHEAVGGFVT----HCGWNSTLEAVAAGVPLVTWPVAA 425 (518)
Q Consensus 357 ~~~~~~~~~lp~~~~~----~~~~~nv~~~~~~pq~---~lL~~~~~~~~It----HgG~~s~~eal~~GvP~l~~P~~~ 425 (518)
..+.+.. ....+|+.+.+++++. .++..+++ +|. -|..+++.||+++|+|+|+.+.
T Consensus 241 ---------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~-- 307 (374)
T cd03801 241 ---------LREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV-- 307 (374)
T ss_pred ---------HHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC--
Confidence 1111211 1246799999999754 46766555 652 3556799999999999998665
Q ss_pred ccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 010093 426 EQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSA 505 (518)
Q Consensus 426 DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~ 505 (518)
......+ +..+.|..+.. .+++++.+++.++++ ++..++...+ ..++...+..+-+...++
T Consensus 308 --~~~~~~~-~~~~~g~~~~~----------~~~~~l~~~i~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 368 (374)
T cd03801 308 --GGIPEVV-EDGETGLLVPP----------GDPEALAEAILRLLD---DPELRRRLGE---AARERVAERFSWDRVAAR 368 (374)
T ss_pred --CChhHHh-cCCcceEEeCC----------CCHHHHHHHHHHHHc---ChHHHHHHHH---HHHHHHHHhcCHHHHHHH
Confidence 4456666 45677777754 468999999999997 4444433222 222222344554444444
Q ss_pred HHH
Q 010093 506 LIE 508 (518)
Q Consensus 506 ~~~ 508 (518)
+++
T Consensus 369 ~~~ 371 (374)
T cd03801 369 TEE 371 (374)
T ss_pred HHH
Confidence 444
No 57
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.04 E-value=2.8e-07 Score=91.57 Aligned_cols=131 Identities=18% Similarity=0.114 Sum_probs=78.6
Q ss_pred CcEEEEecCCcccCCHHHHHHHHHHHHhC-----CCcEEEEEcCCCCCCCCCCCCCCChhH-HHHHhcCCCcEeecCcc-
Q 010093 314 YSVVYVCFGSLANFTSAQLMEIATGLEAS-----GRNFIWVVSKNKNDGGEGGNEDWLPEG-FEKRMEGKGLIIRGWAP- 386 (518)
Q Consensus 314 ~~vIyvslGS~~~~~~~~~~~l~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~lp~~-~~~~~~~~nv~~~~~~p- 386 (518)
++++++..|++.. .+....++++++.+ +.++++. +... ..+. .-.. ........++.+.++..
T Consensus 187 ~~~~i~~~G~~~~--~k~~~~li~~~~~l~~~~~~~~l~i~-G~~~---~~~~----~~~~~~~~~~~~~~v~~~g~~~~ 256 (359)
T cd03808 187 DDPVFLFVARLLK--DKGIDELLEAARILKAKGPNVRLLLV-GDGD---EENP----AAILEIEKLGLEGRVEFLGFRDD 256 (359)
T ss_pred CCcEEEEEecccc--ccCHHHHHHHHHHHHhcCCCeEEEEE-cCCC---cchh----hHHHHHHhcCCcceEEEeecccc
Confidence 4477788888653 33344455555443 3344444 3322 0100 0000 11122346888888754
Q ss_pred HHHhhccCCCccccccc----CchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHH
Q 010093 387 QVLILDHEAVGGFVTHC----GWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETI 462 (518)
Q Consensus 387 q~~lL~~~~~~~~ItHg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l 462 (518)
...++..+++ +|.-. -.+++.||+++|+|+|+.+.. .....+ +..+.|..++. .+++++
T Consensus 257 ~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i-~~~~~g~~~~~----------~~~~~~ 319 (359)
T cd03808 257 VPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAV-IDGVNGFLVPP----------GDAEAL 319 (359)
T ss_pred HHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----Cchhhh-hcCcceEEECC----------CCHHHH
Confidence 3568877665 66432 257899999999999986543 344555 45667777643 478999
Q ss_pred HHHHHHHhc
Q 010093 463 EKAVNEIMV 471 (518)
Q Consensus 463 ~~av~~ll~ 471 (518)
.+++.+++.
T Consensus 320 ~~~i~~l~~ 328 (359)
T cd03808 320 ADAIERLIE 328 (359)
T ss_pred HHHHHHHHh
Confidence 999999997
No 58
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.97 E-value=7e-07 Score=92.04 Aligned_cols=77 Identities=22% Similarity=0.245 Sum_probs=55.0
Q ss_pred HHhhccCCCccccc----ccCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHH
Q 010093 388 VLILDHEAVGGFVT----HCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIE 463 (518)
Q Consensus 388 ~~lL~~~~~~~~It----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~ 463 (518)
..+++.+++- |+. =+|..++.||+++|+|+|.-|...++......+ +..|+++.. -++++|.
T Consensus 314 ~~~y~~aDi~-~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~-~~~g~~~~~------------~d~~~La 379 (425)
T PRK05749 314 GLLYAIADIA-FVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERL-LQAGAAIQV------------EDAEDLA 379 (425)
T ss_pred HHHHHhCCEE-EECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHH-HHCCCeEEE------------CCHHHHH
Confidence 4567665551 331 134456999999999999999988888877777 356655542 2689999
Q ss_pred HHHHHHhcCChHHHHHHH
Q 010093 464 KAVNEIMVGDRAEEMRSR 481 (518)
Q Consensus 464 ~av~~ll~~~~~~~~~~~ 481 (518)
+++.++++ |+..+++
T Consensus 380 ~~l~~ll~---~~~~~~~ 394 (425)
T PRK05749 380 KAVTYLLT---DPDARQA 394 (425)
T ss_pred HHHHHHhc---CHHHHHH
Confidence 99999997 5554433
No 59
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.93 E-value=1.4e-06 Score=87.38 Aligned_cols=113 Identities=21% Similarity=0.184 Sum_probs=72.4
Q ss_pred CCCcEeecCcc-HH---HhhccCCCcccccc----cCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccc
Q 010093 376 GKGLIIRGWAP-QV---LILDHEAVGGFVTH----CGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQ 447 (518)
Q Consensus 376 ~~nv~~~~~~p-q~---~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~ 447 (518)
..++.+.+|++ +. .++..+++ +|.- |..+++.||+++|+|+|+... ......+ +..+.|..+..
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~-~~~~~g~~~~~- 314 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIV-DHGVTGYLAKP- 314 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhhe-eCCCceEEeCC-
Confidence 45788899998 43 46766555 6663 335799999999999997643 2333444 34446666643
Q ss_pred cccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 010093 448 KWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEELR 511 (518)
Q Consensus 448 ~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 511 (518)
.+.+++.+++.++++ ++..+ .++++..++.+.+..+.+...+++++..+
T Consensus 315 ---------~~~~~~~~~l~~l~~---~~~~~---~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 363 (365)
T cd03825 315 ---------GDPEDLAEGIEWLLA---DPDER---EELGEAARELAENEFDSRVQAKRYLSLYE 363 (365)
T ss_pred ---------CCHHHHHHHHHHHHh---CHHHH---HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 478999999999997 44422 33444444444555665555566665443
No 60
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.90 E-value=2.7e-06 Score=84.96 Aligned_cols=79 Identities=22% Similarity=0.167 Sum_probs=58.5
Q ss_pred CCCcEeecCccHH---HhhccCCCcccc----cccCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeecccc
Q 010093 376 GKGLIIRGWAPQV---LILDHEAVGGFV----THCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQK 448 (518)
Q Consensus 376 ~~nv~~~~~~pq~---~lL~~~~~~~~I----tHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~ 448 (518)
.+|+.+.+++++. .++..+++ +| +-|..+++.||+++|+|+|+-+. ......+ +..+.|...+.
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~-~~~~~g~~~~~-- 328 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEII-TDGENGLLVPP-- 328 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecC----CChHHHh-cCCcceeEECC--
Confidence 5689999999875 45666555 55 23456789999999999997654 3345556 46666676643
Q ss_pred ccccccCccChHHHHHHHHHHhc
Q 010093 449 WCRIVGDFVKRETIEKAVNEIMV 471 (518)
Q Consensus 449 ~~~~~~~~~~~~~l~~av~~ll~ 471 (518)
.+.+++.+++.++++
T Consensus 329 --------~~~~~l~~~i~~~~~ 343 (377)
T cd03798 329 --------GDPEALAEAILRLLA 343 (377)
T ss_pred --------CCHHHHHHHHHHHhc
Confidence 489999999999997
No 61
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.89 E-value=9.8e-07 Score=87.25 Aligned_cols=91 Identities=22% Similarity=0.229 Sum_probs=61.6
Q ss_pred CCCcEeecCcc-HHHhhccCCCccccccc----CchhHHHHHHhCCceecCCcccccchhHHHHHHhhh-cceeeccccc
Q 010093 376 GKGLIIRGWAP-QVLILDHEAVGGFVTHC----GWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILK-IGVGVGIQKW 449 (518)
Q Consensus 376 ~~nv~~~~~~p-q~~lL~~~~~~~~ItHg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G-~G~~l~~~~~ 449 (518)
.+++.+.++.. -..++..+++ +|.-. ..+++.||+++|+|+|+.+..+.+ ..+. ..| .|..++.
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~-~~~~~g~~~~~--- 303 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEII-EDGVNGLLVPN--- 303 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhh-ccCcceEEeCC---
Confidence 45777877744 3567877555 55443 257899999999999986544332 3342 444 7777753
Q ss_pred cccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010093 450 CRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALG 486 (518)
Q Consensus 450 ~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~ 486 (518)
.+.+++.+++.++++ +++.+++..+-+
T Consensus 304 -------~~~~~~~~~i~~ll~---~~~~~~~~~~~~ 330 (348)
T cd03820 304 -------GDVEALAEALLRLME---DEELRKRMGANA 330 (348)
T ss_pred -------CCHHHHHHHHHHHHc---CHHHHHHHHHHH
Confidence 478999999999998 666655544443
No 62
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.87 E-value=4e-07 Score=91.84 Aligned_cols=137 Identities=15% Similarity=0.133 Sum_probs=83.4
Q ss_pred CcEEEEecCCcccCCHHHHHHHHHHHHhC-----CCcEEEEEcCCCCCCCCCCCCCCChhHHHHH-hcCCCcEeecCccH
Q 010093 314 YSVVYVCFGSLANFTSAQLMEIATGLEAS-----GRNFIWVVSKNKNDGGEGGNEDWLPEGFEKR-MEGKGLIIRGWAPQ 387 (518)
Q Consensus 314 ~~vIyvslGS~~~~~~~~~~~l~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~nv~~~~~~pq 387 (518)
+.+|+++.+-.... .+.+..+++++..+ +.++++....+. + .-+.+... ...+|+++.+.+++
T Consensus 197 ~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~------~----~~~~~~~~~~~~~~v~~~~~~~~ 265 (365)
T TIGR00236 197 KRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNP------V----VREPLHKHLGDSKRVHLIEPLEY 265 (365)
T ss_pred CCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCCh------H----HHHHHHHHhCCCCCEEEECCCCh
Confidence 34676665432221 24567778877764 345555533222 1 11112121 12468888877765
Q ss_pred H---HhhccCCCcccccccCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHH
Q 010093 388 V---LILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEK 464 (518)
Q Consensus 388 ~---~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~ 464 (518)
. .++.++ +++|+-.|.. +.||+++|+|+|.++..++++ .+. ..|.+..+. .++++|.+
T Consensus 266 ~~~~~~l~~a--d~vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~----e~~-~~g~~~lv~-----------~d~~~i~~ 326 (365)
T TIGR00236 266 LDFLNLAANS--HLILTDSGGV-QEEAPSLGKPVLVLRDTTERP----ETV-EAGTNKLVG-----------TDKENITK 326 (365)
T ss_pred HHHHHHHHhC--CEEEECChhH-HHHHHHcCCCEEECCCCCCCh----HHH-hcCceEEeC-----------CCHHHHHH
Confidence 3 456564 4588876644 799999999999997655554 232 457666542 37899999
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 010093 465 AVNEIMVGDRAEEMRSRAK 483 (518)
Q Consensus 465 av~~ll~~~~~~~~~~~a~ 483 (518)
++.++++ ++..+++..
T Consensus 327 ai~~ll~---~~~~~~~~~ 342 (365)
T TIGR00236 327 AAKRLLT---DPDEYKKMS 342 (365)
T ss_pred HHHHHHh---ChHHHHHhh
Confidence 9999997 556555443
No 63
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.84 E-value=2.4e-06 Score=85.49 Aligned_cols=127 Identities=17% Similarity=0.107 Sum_probs=81.5
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHhCC-CcEEEEEcCCCCCCCCCCCCCCChhHHHH----HhcCCCcEeecCccHHH-
Q 010093 316 VVYVCFGSLANFTSAQLMEIATGLEASG-RNFIWVVSKNKNDGGEGGNEDWLPEGFEK----RMEGKGLIIRGWAPQVL- 389 (518)
Q Consensus 316 vIyvslGS~~~~~~~~~~~l~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~lp~~~~~----~~~~~nv~~~~~~pq~~- 389 (518)
.+++..|++. ..+....++++++.+. .++++.- .+. ..+.+.. ....+||.+.+|+|+.+
T Consensus 192 ~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G-~g~-----------~~~~~~~~~~~~~~~~~V~~~g~v~~~~~ 257 (357)
T cd03795 192 PFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVG-EGP-----------LEAELEALAAALGLLDRVRFLGRLDDEEK 257 (357)
T ss_pred cEEEEecccc--cccCHHHHHHHHHhccCcEEEEEe-CCh-----------hHHHHHHHHHhcCCcceEEEcCCCCHHHH
Confidence 5667778765 3456667888888777 4444432 222 1112221 12357999999999754
Q ss_pred --hhccCCCccccc---ccC-chhHHHHHHhCCceecCCcccccchhHHHHHHh-hhcceeeccccccccccCccChHHH
Q 010093 390 --ILDHEAVGGFVT---HCG-WNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEI-LKIGVGVGIQKWCRIVGDFVKRETI 462 (518)
Q Consensus 390 --lL~~~~~~~~It---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~-~G~G~~l~~~~~~~~~~~~~~~~~l 462 (518)
++..+++-++.+ +.| ..++.||+++|+|+|+....+.. ..+ +. .+.|..+.. .+.+++
T Consensus 258 ~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~----~~i-~~~~~~g~~~~~----------~d~~~~ 322 (357)
T cd03795 258 AALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGG----SYV-NLHGVTGLVVPP----------GDPAAL 322 (357)
T ss_pred HHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCch----hHH-hhCCCceEEeCC----------CCHHHH
Confidence 666666533333 234 34799999999999986544433 344 23 466776643 489999
Q ss_pred HHHHHHHhc
Q 010093 463 EKAVNEIMV 471 (518)
Q Consensus 463 ~~av~~ll~ 471 (518)
.++|.++++
T Consensus 323 ~~~i~~l~~ 331 (357)
T cd03795 323 AEAIRRLLE 331 (357)
T ss_pred HHHHHHHHH
Confidence 999999997
No 64
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.83 E-value=4.2e-06 Score=85.17 Aligned_cols=78 Identities=17% Similarity=0.065 Sum_probs=55.2
Q ss_pred CCCcEeecCccHH---HhhccCCCccccc---ccC-chhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeecccc
Q 010093 376 GKGLIIRGWAPQV---LILDHEAVGGFVT---HCG-WNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQK 448 (518)
Q Consensus 376 ~~nv~~~~~~pq~---~lL~~~~~~~~It---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~ 448 (518)
.+||.+.+++|+. .++..+++ ++. .-| ..++.||+++|+|+|+.-. ......+ ...+.|..+.
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i-~~~~~g~~~~--- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETV-VDGETGFLCE--- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHh-ccCCceEEeC---
Confidence 4789999999975 46766665 552 122 3578999999999998643 3344455 3545566652
Q ss_pred ccccccCccChHHHHHHHHHHhc
Q 010093 449 WCRIVGDFVKRETIEKAVNEIMV 471 (518)
Q Consensus 449 ~~~~~~~~~~~~~l~~av~~ll~ 471 (518)
.+.+++.++|.++++
T Consensus 349 --------~~~~~~a~~i~~l~~ 363 (392)
T cd03805 349 --------PTPEEFAEAMLKLAN 363 (392)
T ss_pred --------CCHHHHHHHHHHHHh
Confidence 378999999999997
No 65
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.82 E-value=1.8e-06 Score=85.12 Aligned_cols=154 Identities=18% Similarity=0.058 Sum_probs=88.5
Q ss_pred CcEEEEecCCcccCCHHHHHHHHHHHHhCCCc-EEEEEcCCCCCCCCCCCCCCChhHHHHHh-cCCCcEeecCccHHHhh
Q 010093 314 YSVVYVCFGSLANFTSAQLMEIATGLEASGRN-FIWVVSKNKNDGGEGGNEDWLPEGFEKRM-EGKGLIIRGWAPQVLIL 391 (518)
Q Consensus 314 ~~vIyvslGS~~~~~~~~~~~l~~al~~~~~~-~i~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~pq~~lL 391 (518)
+++|.+-=||...--...+..++++...+..+ .++.+.... + . +.+.... +...+.+.+ ...+++
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~------~----~-~~i~~~~~~~~~~~~~~--~~~~~m 233 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFF------K----G-KDLKEIYGDISEFEISY--DTHKAL 233 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCC------c----H-HHHHHHHhcCCCcEEec--cHHHHH
Confidence 35888888887642234444455666654332 333333222 1 1 1222211 112333332 345688
Q ss_pred ccCCCcccccccCchhHHHHHHhCCceecCCc--ccccchhHHHHHH---hhhcceeecc----c--cccccccCccChH
Q 010093 392 DHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPV--AAEQFYNEKMVNE---ILKIGVGVGI----Q--KWCRIVGDFVKRE 460 (518)
Q Consensus 392 ~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~--~~DQ~~na~~v~e---~~G~G~~l~~----~--~~~~~~~~~~~~~ 460 (518)
..++ ++|+-.|..|+ |++.+|+|||+ ++ ..=|..||+++ . ..|++-.+.. + -.++. .++.|++
T Consensus 234 ~~aD--lal~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~l-v~~~~igL~Nii~~~~~~~~vvPEll-Q~~~t~~ 307 (347)
T PRK14089 234 LEAE--FAFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMF-VKLKHIGLANIFFDFLGKEPLHPELL-QEFVTVE 307 (347)
T ss_pred Hhhh--HHHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHH-HcCCeeehHHHhcCCCcccccCchhh-cccCCHH
Confidence 7755 59999999999 99999999998 54 34578899988 4 4444433311 0 00001 1368999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010093 461 TIEKAVNEIMVGDRAEEMRSRAKALGKMAK 490 (518)
Q Consensus 461 ~l~~av~~ll~~~~~~~~~~~a~~l~~~~~ 490 (518)
.|.+++.+ +. .+.+++...++.+.+.
T Consensus 308 ~la~~i~~-~~---~~~~~~~~~~l~~~l~ 333 (347)
T PRK14089 308 NLLKAYKE-MD---REKFFKKSKELREYLK 333 (347)
T ss_pred HHHHHHHH-HH---HHHHHHHHHHHHHHhc
Confidence 99999987 33 4566666666666554
No 66
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.82 E-value=4.9e-06 Score=84.95 Aligned_cols=114 Identities=13% Similarity=0.033 Sum_probs=70.3
Q ss_pred CCCcEeecCccHHH---hhccCCCccccc---ccCc-hhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeecccc
Q 010093 376 GKGLIIRGWAPQVL---ILDHEAVGGFVT---HCGW-NSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQK 448 (518)
Q Consensus 376 ~~nv~~~~~~pq~~---lL~~~~~~~~It---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~ 448 (518)
.+++.+.+|+|+.+ +++.+++ +|. +-|. .++.||+++|+|+|+.+..+ ....+ +. |.+...
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~~-~~~~~~---- 316 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-PP-DMILLA---- 316 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-eC-Cceeec----
Confidence 45789999998644 6666555 543 3344 49999999999999877642 23344 23 433222
Q ss_pred ccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhh
Q 010093 449 WCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEELRLSR 514 (518)
Q Consensus 449 ~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 514 (518)
..+.+++.+++.++++ +..-+ ..+.+..+..+++..+-+.-++++++..+...
T Consensus 317 -------~~~~~~l~~~l~~~l~---~~~~~---~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~ 369 (398)
T cd03796 317 -------EPDVESIVRKLEEAIS---ILRTG---KHDPWSFHNRVKKMYSWEDVAKRTEKVYDRIL 369 (398)
T ss_pred -------CCCHHHHHHHHHHHHh---Chhhh---hhHHHHHHHHHHhhCCHHHHHHHHHHHHHHHh
Confidence 2378999999999996 21111 12233333444566776666677666655443
No 67
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.81 E-value=6.4e-06 Score=80.56 Aligned_cols=299 Identities=20% Similarity=0.228 Sum_probs=158.2
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCcccc
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENLDA 115 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~~~ 115 (518)
|||.|--.-. -|+..+.++.++|.++||+|.+.+-+... +..... -.++.+..+- ..+ .
T Consensus 1 MkIwiDi~~p-~hvhfFk~~I~eL~~~GheV~it~R~~~~--~~~LL~-----~yg~~y~~iG--------~~g-~---- 59 (335)
T PF04007_consen 1 MKIWIDITHP-AHVHFFKNIIRELEKRGHEVLITARDKDE--TEELLD-----LYGIDYIVIG--------KHG-D---- 59 (335)
T ss_pred CeEEEECCCc-hHHHHHHHHHHHHHhCCCEEEEEEeccch--HHHHHH-----HcCCCeEEEc--------CCC-C----
Confidence 5666544333 39999999999999999999998886532 222211 1255555552 011 1
Q ss_pred ccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEecchHHHHHHHhhhhhcCCCC
Q 010093 116 ITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALYEPHK 195 (518)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 195 (518)
.....+... ....-.+.+++++.+||++|+- ....+..+|..+|+|.|.+.-.......
T Consensus 60 -------~~~~Kl~~~-~~R~~~l~~~~~~~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~------------ 118 (335)
T PF04007_consen 60 -------SLYGKLLES-IERQYKLLKLIKKFKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQ------------ 118 (335)
T ss_pred -------CHHHHHHHH-HHHHHHHHHHHHhhCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhcc------------
Confidence 112222222 2234466677778999999975 5567888999999999998654321110
Q ss_pred CCCCCCCccccCCCCCCccccCCC---CCcccccCCCCchHHHHHHHhhhhcccccEEE-EcCccccchHHHHHHHHhhC
Q 010093 196 KVSSDSEPFVMPHFPGEIKLTRNQ---LPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVA-VNSFYELEPAYADHYRKALG 271 (518)
Q Consensus 196 ~~~~~~~~~~~p~l~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ns~~~L~~~~~~~~~~~~~ 271 (518)
+++++.+.+ .|.. . -...+.++. .. ..+. .+.+.|+.
T Consensus 119 ---------------~~Lt~Pla~~i~~P~~---~-----~~~~~~~~G---~~-~~i~~y~G~~E~a------------ 159 (335)
T PF04007_consen 119 ---------------NRLTLPLADVIITPEA---I-----PKEFLKRFG---AK-NQIRTYNGYKELA------------ 159 (335)
T ss_pred ---------------ceeehhcCCeeECCcc---c-----CHHHHHhcC---Cc-CCEEEECCeeeEE------------
Confidence 000011000 0110 0 000111110 00 1122 33333332
Q ss_pred CcEEEeCccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCccc----CCHHHHHHHHHHHHhCCCcEE
Q 010093 272 RRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLAN----FTSAQLMEIATGLEASGRNFI 347 (518)
Q Consensus 272 ~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~----~~~~~~~~l~~al~~~~~~~i 347 (518)
++-|+. ++++..+-+... +.+.|++=+.+..+ .....+..+++.+++.+.. |
T Consensus 160 ----yl~~F~------------------Pd~~vl~~lg~~-~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~-v 215 (335)
T PF04007_consen 160 ----YLHPFK------------------PDPEVLKELGLD-DEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRN-V 215 (335)
T ss_pred ----eecCCC------------------CChhHHHHcCCC-CCCEEEEEeccccCeeecCccchHHHHHHHHHhhCce-E
Confidence 111210 123333334322 45677777766433 2345677788999888877 4
Q ss_pred EEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEee-cCccHHHhhccCCCcccccccCchhHHHHHHhCCceecCCcccc
Q 010093 348 WVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIR-GWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAE 426 (518)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~-~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~D 426 (518)
+.++... + .++.++ .-++.+. .-+.-.+||.++++ +|+-|| ....||...|+|.+.+ +-++
T Consensus 216 V~ipr~~------~----~~~~~~----~~~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~ 277 (335)
T PF04007_consen 216 VIIPRYE------D----QRELFE----KYGVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGK 277 (335)
T ss_pred EEecCCc------c----hhhHHh----ccCccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCc
Confidence 4444433 1 111111 1123332 33444589988665 998877 6788999999999974 1122
Q ss_pred cchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHh
Q 010093 427 QFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIM 470 (518)
Q Consensus 427 Q~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll 470 (518)
-...-+.+. +.|. ... ..+.+++.+.+.+.+
T Consensus 278 ~~~vd~~L~-~~Gl--l~~----------~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 278 LLAVDKYLI-EKGL--LYH----------STDPDEIVEYVRKNL 308 (335)
T ss_pred chhHHHHHH-HCCC--eEe----------cCCHHHHHHHHHHhh
Confidence 222223453 4454 332 357777877666655
No 68
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.78 E-value=8.4e-06 Score=81.52 Aligned_cols=107 Identities=17% Similarity=0.062 Sum_probs=66.9
Q ss_pred CCCcEeecCccHHH---hhccCCCcccccc--cCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeecccccc
Q 010093 376 GKGLIIRGWAPQVL---ILDHEAVGGFVTH--CGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWC 450 (518)
Q Consensus 376 ~~nv~~~~~~pq~~---lL~~~~~~~~ItH--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~ 450 (518)
.+|+.+.+|+++.+ ++..+++-++-++ |-.+++.||+++|+|+|+.+. ......+ +. +.|.....
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~-~~-~~~~~~~~---- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELI-EY-GCGWVVDD---- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHh-hc-CceEEeCC----
Confidence 57899999999544 5766665222222 224689999999999998653 3445555 35 67766532
Q ss_pred ccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 010093 451 RIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSA 505 (518)
Q Consensus 451 ~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~ 505 (518)
+.+++.++|.++++ +++.+++. ++..++.+.+..+....+++
T Consensus 331 -------~~~~~~~~i~~l~~---~~~~~~~~---~~~~~~~~~~~~s~~~~~~~ 372 (375)
T cd03821 331 -------DVDALAAALRRALE---LPQRLKAM---GENGRALVEERFSWTAIAQQ 372 (375)
T ss_pred -------ChHHHHHHHHHHHh---CHHHHHHH---HHHHHHHHHHhcCHHHHHHH
Confidence 44999999999997 54433333 33333333455554443333
No 69
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.77 E-value=1.3e-05 Score=80.01 Aligned_cols=100 Identities=21% Similarity=0.256 Sum_probs=65.4
Q ss_pred CCCcEeecCccHHH---hhccCCCccccc----------ccCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcce
Q 010093 376 GKGLIIRGWAPQVL---ILDHEAVGGFVT----------HCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGV 442 (518)
Q Consensus 376 ~~nv~~~~~~pq~~---lL~~~~~~~~It----------HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~ 442 (518)
.+|+.+.+++|+.+ ++..+++ +|. -|..+++.||+++|+|+|+.+..+ ....+ +....|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i-~~~~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELV-EDGETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhh-hCCCceE
Confidence 57899999998644 6666555 554 234579999999999999866422 23344 3444777
Q ss_pred eeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCC
Q 010093 443 GVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGS 498 (518)
Q Consensus 443 ~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~ 498 (518)
.+.. .+.+++.++|.++++ ++.. ..++++..++.+++..+
T Consensus 308 ~~~~----------~~~~~l~~~i~~~~~---~~~~---~~~~~~~a~~~~~~~~s 347 (355)
T cd03799 308 LVPP----------GDPEALADAIERLLD---DPEL---RREMGEAGRARVEEEFD 347 (355)
T ss_pred EeCC----------CCHHHHHHHHHHHHh---CHHH---HHHHHHHHHHHHHHhcC
Confidence 7743 488999999999997 4333 33344444433344444
No 70
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.73 E-value=6.2e-05 Score=77.01 Aligned_cols=111 Identities=17% Similarity=0.041 Sum_probs=70.5
Q ss_pred CCCcEeecCccHH---HhhccCCCccccc---c-cCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeecccc
Q 010093 376 GKGLIIRGWAPQV---LILDHEAVGGFVT---H-CGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQK 448 (518)
Q Consensus 376 ~~nv~~~~~~pq~---~lL~~~~~~~~It---H-gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~ 448 (518)
.+|+.+.+++|+. +++..+++ +|. + |...++.||+++|+|+|+... ......+ +..+.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~~-- 352 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAV-ADGETGLLVDG-- 352 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhh-ccCCceEECCC--
Confidence 4689999999864 46877665 552 2 334589999999999998654 3344555 45566777643
Q ss_pred ccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 010093 449 WCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEEL 510 (518)
Q Consensus 449 ~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 510 (518)
-+.+++.++|.++++ ++..+++...-+.. .+ +..+-+.-++++++..
T Consensus 353 --------~d~~~la~~i~~~l~---~~~~~~~~~~~~~~---~~-~~fsw~~~~~~~~~~y 399 (405)
T TIGR03449 353 --------HDPADWADALARLLD---DPRTRIRMGAAAVE---HA-AGFSWAATADGLLSSY 399 (405)
T ss_pred --------CCHHHHHHHHHHHHh---CHHHHHHHHHHHHH---HH-HhCCHHHHHHHHHHHH
Confidence 488999999999997 54444333332222 21 2345444444444443
No 71
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.71 E-value=5.8e-07 Score=90.53 Aligned_cols=134 Identities=18% Similarity=0.155 Sum_probs=83.7
Q ss_pred CCcEEEEecCCcccC-CHHHHHHHHHHHHhCCCc-EEEEEcCCCCCCCCCCCCCCChhHHHHHhc-CCCcEeecCccHH-
Q 010093 313 PYSVVYVCFGSLANF-TSAQLMEIATGLEASGRN-FIWVVSKNKNDGGEGGNEDWLPEGFEKRME-GKGLIIRGWAPQV- 388 (518)
Q Consensus 313 ~~~vIyvslGS~~~~-~~~~~~~l~~al~~~~~~-~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~~~pq~- 388 (518)
+++.|++++|..... ..+.+..++++++.+... +.+..+... ...+.+-+....... .+|+.+.+..++.
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~------~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~ 270 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHP------RTRPRIREAGLEFLGHHPNVLLISPLGYLY 270 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCC------ChHHHHHHHHHhhccCCCCEEEECCcCHHH
Confidence 355788888876543 466788888888876432 444444332 111112111111111 4688887766544
Q ss_pred --HhhccCCCcccccccCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHH
Q 010093 389 --LILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAV 466 (518)
Q Consensus 389 --~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av 466 (518)
.++.. +++||+-.| |.+.||+++|+|+|+++.. |. +..++ +.|++..+ . .+.++|.+++
T Consensus 271 ~~~l~~~--ad~~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~-~~g~~~~~--~---------~~~~~i~~~i 331 (363)
T cd03786 271 FLLLLKN--ADLVLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETV-ESGTNVLV--G---------TDPEAILAAI 331 (363)
T ss_pred HHHHHHc--CcEEEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhh-heeeEEec--C---------CCHHHHHHHH
Confidence 45655 445999988 7788999999999998743 22 33443 55666544 1 2589999999
Q ss_pred HHHhc
Q 010093 467 NEIMV 471 (518)
Q Consensus 467 ~~ll~ 471 (518)
.++++
T Consensus 332 ~~ll~ 336 (363)
T cd03786 332 EKLLS 336 (363)
T ss_pred HHHhc
Confidence 99997
No 72
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.70 E-value=4.4e-05 Score=76.39 Aligned_cols=108 Identities=17% Similarity=0.139 Sum_probs=68.2
Q ss_pred CCCcEeecC-ccHH---HhhccCCCccccc--c----cCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeec
Q 010093 376 GKGLIIRGW-APQV---LILDHEAVGGFVT--H----CGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVG 445 (518)
Q Consensus 376 ~~nv~~~~~-~pq~---~lL~~~~~~~~It--H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~ 445 (518)
.+|+.+.+. +|+. .++..+++ +|. . |..+++.||+++|+|+|+.+..+ ...+ ...+.|..+.
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i-~~~~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEV-LDGGTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hhee-eeCCCcEEEc
Confidence 568887754 8864 46766555 552 2 33568999999999999977654 2334 3556777775
Q ss_pred cccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 010093 446 IQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIE 508 (518)
Q Consensus 446 ~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 508 (518)
. .+.+++.+++.++++ ++..+. ++++..++.+++ .+-+...+++++
T Consensus 318 ~----------~d~~~~~~~l~~l~~---~~~~~~---~~~~~~~~~~~~-~s~~~~~~~~~~ 363 (366)
T cd03822 318 P----------GDPAALAEAIRRLLA---DPELAQ---ALRARAREYARA-MSWERVAERYLR 363 (366)
T ss_pred C----------CCHHHHHHHHHHHHc---ChHHHH---HHHHHHHHHHhh-CCHHHHHHHHHH
Confidence 4 368999999999997 433333 333444433344 555544444443
No 73
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.68 E-value=4.7e-05 Score=78.80 Aligned_cols=166 Identities=13% Similarity=0.066 Sum_probs=96.0
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHhC-----CCcEEEEEcCCCCCCCCCCCCCCCh----hHHH---HH-hcCCCcEee
Q 010093 316 VVYVCFGSLANFTSAQLMEIATGLEAS-----GRNFIWVVSKNKNDGGEGGNEDWLP----EGFE---KR-MEGKGLIIR 382 (518)
Q Consensus 316 vIyvslGS~~~~~~~~~~~l~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~lp----~~~~---~~-~~~~nv~~~ 382 (518)
.++++.|.+. +.+.+..+++|++.+ ..++++..+.+. +.+.+.+ .. +.+. .+ .-.++|.+.
T Consensus 249 ~~i~~vGrl~--~~Kg~~~li~A~~~l~~~~~~~~l~li~G~g~---~~~~l~~-~~~~~~~~~~~~~~~~~l~~~V~f~ 322 (439)
T TIGR02472 249 PPILAISRPD--RRKNIPSLVEAYGRSPKLQEMANLVLVLGCRD---DIRKMES-QQREVLQKVLLLIDRYDLYGKVAYP 322 (439)
T ss_pred cEEEEEcCCc--ccCCHHHHHHHHHhChhhhhhccEEEEeCCcc---ccccccH-HHHHHHHHHHHHHHHcCCCceEEec
Confidence 4556667764 456677778887642 123444445433 1111111 00 0011 11 124678888
Q ss_pred cCccHHHh---hccC--CCcccccc----cCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccc
Q 010093 383 GWAPQVLI---LDHE--AVGGFVTH----CGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIV 453 (518)
Q Consensus 383 ~~~pq~~l---L~~~--~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~ 453 (518)
+++++.++ +..+ ++++||.- |-..++.||+++|+|+|+.... .+...+ +....|..++.
T Consensus 323 g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv-~~~~~G~lv~~------- 390 (439)
T TIGR02472 323 KHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDII-ANCRNGLLVDV------- 390 (439)
T ss_pred CCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHh-cCCCcEEEeCC-------
Confidence 88887654 5433 12446653 3246999999999999987653 344455 34456777754
Q ss_pred cCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 010093 454 GDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIE 508 (518)
Q Consensus 454 ~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 508 (518)
-+++++.++|.++++ ++.. .+++++..++.+.+..+-..-++++.+
T Consensus 391 ---~d~~~la~~i~~ll~---~~~~---~~~~~~~a~~~~~~~fsw~~~~~~~~~ 436 (439)
T TIGR02472 391 ---LDLEAIASALEDALS---DSSQ---WQLWSRNGIEGVRRHYSWDAHVEKYLR 436 (439)
T ss_pred ---CCHHHHHHHHHHHHh---CHHH---HHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 488999999999997 5443 345666655555566665554444443
No 74
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.67 E-value=6.3e-06 Score=81.49 Aligned_cols=141 Identities=17% Similarity=0.166 Sum_probs=80.8
Q ss_pred CcEEEEecCCcccCCHHHHHHHHHHHHhCC-----CcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccH-
Q 010093 314 YSVVYVCFGSLANFTSAQLMEIATGLEASG-----RNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQ- 387 (518)
Q Consensus 314 ~~vIyvslGS~~~~~~~~~~~l~~al~~~~-----~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq- 387 (518)
+..+++..|++. ..+....++++++.+. .++++. +.+. ..+. +-+........+++.+.+|.+.
T Consensus 188 ~~~~i~~~g~~~--~~k~~~~~i~~~~~l~~~~~~~~l~i~-G~~~---~~~~----~~~~~~~~~~~~~v~~~g~~~~~ 257 (353)
T cd03811 188 DGPVILAVGRLS--PQKGFDTLIRAFALLRKEGPDARLVIL-GDGP---LREE----LEALAKELGLADRVHFLGFQSNP 257 (353)
T ss_pred CceEEEEEecch--hhcChHHHHHHHHHhhhcCCCceEEEE-cCCc---cHHH----HHHHHHhcCCCccEEEecccCCH
Confidence 346777788865 3444555666666543 344443 3322 0000 1001111123568888888774
Q ss_pred HHhhccCCCccccc--c--cCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHH-
Q 010093 388 VLILDHEAVGGFVT--H--CGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETI- 462 (518)
Q Consensus 388 ~~lL~~~~~~~~It--H--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l- 462 (518)
..++..+++ +|. + |..+++.||+++|+|+|+.... .....+ +..+.|...+. .+.+.+
T Consensus 258 ~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i-~~~~~g~~~~~----------~~~~~~~ 320 (353)
T cd03811 258 YPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREIL-EDGENGLLVPV----------GDEAALA 320 (353)
T ss_pred HHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHh-cCCCceEEECC----------CCHHHHH
Confidence 568877665 552 2 3356899999999999985443 556666 56677887754 366777
Q ss_pred --HHHHHHHhcCChHHHHHHHHHH
Q 010093 463 --EKAVNEIMVGDRAEEMRSRAKA 484 (518)
Q Consensus 463 --~~av~~ll~~~~~~~~~~~a~~ 484 (518)
.+++.+++. ++..+++...
T Consensus 321 ~~~~~i~~~~~---~~~~~~~~~~ 341 (353)
T cd03811 321 AAALALLDLLL---DPELRERLAA 341 (353)
T ss_pred HHHHHHHhccC---ChHHHHHHHH
Confidence 555556555 4444443333
No 75
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.64 E-value=1.9e-05 Score=79.43 Aligned_cols=79 Identities=22% Similarity=0.203 Sum_probs=59.2
Q ss_pred CCCcEeecCccHHH---hhccCCCcccccc----------cCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcce
Q 010093 376 GKGLIIRGWAPQVL---ILDHEAVGGFVTH----------CGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGV 442 (518)
Q Consensus 376 ~~nv~~~~~~pq~~---lL~~~~~~~~ItH----------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~ 442 (518)
.+++.+.+++|+.+ ++..+++ +|.- |-.+++.||+++|+|+|+-+.. .++..+ +..+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i-~~~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAV-EDGETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhhe-ecCCeeE
Confidence 57899999998654 4766565 5431 2357999999999999986653 356666 4667788
Q ss_pred eeccccccccccCccChHHHHHHHHHHhc
Q 010093 443 GVGIQKWCRIVGDFVKRETIEKAVNEIMV 471 (518)
Q Consensus 443 ~l~~~~~~~~~~~~~~~~~l~~av~~ll~ 471 (518)
.++. .+.+++.+++.++++
T Consensus 317 ~~~~----------~d~~~l~~~i~~l~~ 335 (367)
T cd05844 317 LVPE----------GDVAALAAALGRLLA 335 (367)
T ss_pred EECC----------CCHHHHHHHHHHHHc
Confidence 7754 478999999999997
No 76
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.63 E-value=6.9e-05 Score=74.58 Aligned_cols=158 Identities=20% Similarity=0.166 Sum_probs=89.2
Q ss_pred cEEEEecCCcccCCHHHHHHHHHHHHhC-----CCcEEEEEcCCCCCCCCCCCCCCChhHHHH--HhcCCCcEeecCcc-
Q 010093 315 SVVYVCFGSLANFTSAQLMEIATGLEAS-----GRNFIWVVSKNKNDGGEGGNEDWLPEGFEK--RMEGKGLIIRGWAP- 386 (518)
Q Consensus 315 ~vIyvslGS~~~~~~~~~~~l~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~--~~~~~nv~~~~~~p- 386 (518)
..+++..|+... .+....+++++..+ +.++++. |.+. . ...+ ..+.. ....+++.+.+...
T Consensus 193 ~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~~~~~l~i~-G~~~------~-~~~~-~~~~~~~~~~~~~v~~~g~~~~ 261 (365)
T cd03807 193 TFLIGIVARLHP--QKDHATLLRAAALLLKKFPNARLLLV-GDGP------D-RANL-ELLALKELGLEDKVILLGERSD 261 (365)
T ss_pred CeEEEEecccch--hcCHHHHHHHHHHHHHhCCCeEEEEe-cCCc------c-hhHH-HHHHHHhcCCCceEEEcccccc
Confidence 356677787654 33445555555542 3455554 3222 0 0001 11111 11245677766554
Q ss_pred HHHhhccCCCccccccc----CchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHH
Q 010093 387 QVLILDHEAVGGFVTHC----GWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETI 462 (518)
Q Consensus 387 q~~lL~~~~~~~~ItHg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l 462 (518)
...++..+++ +|... ..+++.||+++|+|+|+. |...+...+ +. .|..+.. .+.+++
T Consensus 262 ~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~----~~~~~~e~~-~~--~g~~~~~----------~~~~~l 322 (365)
T cd03807 262 VPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVAT----DVGDNAELV-GD--TGFLVPP----------GDPEAL 322 (365)
T ss_pred HHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEc----CCCChHHHh-hc--CCEEeCC----------CCHHHH
Confidence 3568877665 66543 347999999999999985 444556566 34 6666644 378999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 010093 463 EKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIE 508 (518)
Q Consensus 463 ~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 508 (518)
.+++.++++ ++. ...++++..++.+.+.-+-....+.+.+
T Consensus 323 ~~~i~~l~~---~~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 362 (365)
T cd03807 323 AEAIEALLA---DPA---LRQALGEAARERIEENFSIEAMVEAYEE 362 (365)
T ss_pred HHHHHHHHh---ChH---HHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999997 432 2333444444444555555444444443
No 77
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.60 E-value=5.6e-05 Score=75.54 Aligned_cols=81 Identities=15% Similarity=0.080 Sum_probs=56.1
Q ss_pred CCCcEeecCcc-HHHhhccCCCccccc--ccC-chhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccc
Q 010093 376 GKGLIIRGWAP-QVLILDHEAVGGFVT--HCG-WNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCR 451 (518)
Q Consensus 376 ~~nv~~~~~~p-q~~lL~~~~~~~~It--HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~ 451 (518)
.+|+.+.+|.+ ...++..+++-++-+ +-| .+++.||+++|+|+|+... ......+ +..+.|..+..
T Consensus 245 ~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i-~~~~~g~~~~~----- 314 (355)
T cd03819 245 QDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETV-RPGETGLLVPP----- 314 (355)
T ss_pred cceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHH-hCCCceEEeCC-----
Confidence 46899999865 356787777633333 223 3699999999999998653 2345555 45557877754
Q ss_pred cccCccChHHHHHHHHHHhc
Q 010093 452 IVGDFVKRETIEKAVNEIMV 471 (518)
Q Consensus 452 ~~~~~~~~~~l~~av~~ll~ 471 (518)
.+.+++.++|.+++.
T Consensus 315 -----~~~~~l~~~i~~~~~ 329 (355)
T cd03819 315 -----GDAEALAQALDQILS 329 (355)
T ss_pred -----CCHHHHHHHHHHHHh
Confidence 489999999976664
No 78
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.59 E-value=6.8e-06 Score=82.70 Aligned_cols=131 Identities=13% Similarity=0.219 Sum_probs=77.9
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHhCCCcE-EEEEcCCCCCCCCCCCCCCChhHHHHH-hcCCCcEeecCccH--HH--
Q 010093 316 VVYVCFGSLANFTSAQLMEIATGLEASGRNF-IWVVSKNKNDGGEGGNEDWLPEGFEKR-MEGKGLIIRGWAPQ--VL-- 389 (518)
Q Consensus 316 vIyvslGS~~~~~~~~~~~l~~al~~~~~~~-i~~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~nv~~~~~~pq--~~-- 389 (518)
.+++..|.+.....+.+..+++++......+ ++.+|.+. + .+.+ +....+ ..++++.+.+|+++ ..
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~------~-~~~l-~~~~~~~~l~~~v~f~G~~~~~~~~~~ 252 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGS------D-FEKC-KAYSRELGIEQRIIWHGWQSQPWEVVQ 252 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCc------c-HHHH-HHHHHHcCCCCeEEEecccCCcHHHHH
Confidence 4567777765334456777888887764332 33344333 1 0001 111111 23568999999753 22
Q ss_pred -hhccCCCccccc--c--cCchhHHHHHHhCCceecCC-cccccchhHHHHHHhhhcceeeccccccccccCccChHHHH
Q 010093 390 -ILDHEAVGGFVT--H--CGWNSTLEAVAAGVPLVTWP-VAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIE 463 (518)
Q Consensus 390 -lL~~~~~~~~It--H--gG~~s~~eal~~GvP~l~~P-~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~ 463 (518)
.+..+++ +|. + |-..++.||+++|+|+|+.- ..+ ....+ +....|..+.. .+.+++.
T Consensus 253 ~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv-~~~~~G~lv~~----------~d~~~la 315 (359)
T PRK09922 253 QKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDII-KPGLNGELYTP----------GNIDEFV 315 (359)
T ss_pred HHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHc-cCCCceEEECC----------CCHHHHH
Confidence 3433344 553 2 33579999999999999865 322 22344 34456777743 4899999
Q ss_pred HHHHHHhc
Q 010093 464 KAVNEIMV 471 (518)
Q Consensus 464 ~av~~ll~ 471 (518)
++|.++++
T Consensus 316 ~~i~~l~~ 323 (359)
T PRK09922 316 GKLNKVIS 323 (359)
T ss_pred HHHHHHHh
Confidence 99999998
No 79
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.58 E-value=1.8e-05 Score=80.91 Aligned_cols=120 Identities=13% Similarity=0.075 Sum_probs=70.7
Q ss_pred EecCCcccCCHHHHHHHHHHHHhC----CCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhc--C-CCcEeecCccHHHhh
Q 010093 319 VCFGSLANFTSAQLMEIATGLEAS----GRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRME--G-KGLIIRGWAPQVLIL 391 (518)
Q Consensus 319 vslGS~~~~~~~~~~~l~~al~~~----~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~-~nv~~~~~~pq~~lL 391 (518)
+..|-+. ..+.+..++++++.+ +.--+..+|.++ +. +.++...+ + ...++.++.+..+++
T Consensus 232 l~vGRL~--~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp---~~--------~~L~~~a~~l~l~~~vf~G~~~~~~~~ 298 (462)
T PLN02846 232 YYIGKMV--WSKGYKELLKLLHKHQKELSGLEVDLYGSGE---DS--------DEVKAAAEKLELDVRVYPGRDHADPLF 298 (462)
T ss_pred EEEecCc--ccCCHHHHHHHHHHHHhhCCCeEEEEECCCc---cH--------HHHHHHHHhcCCcEEEECCCCCHHHHH
Confidence 3445544 466777788887753 222244555554 11 12222211 1 122355666666788
Q ss_pred ccCCCcccccc----cCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHH
Q 010093 392 DHEAVGGFVTH----CGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVN 467 (518)
Q Consensus 392 ~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~ 467 (518)
...++ ||.- +-..++.||+++|+|+|+.-..+ + ..+ +.-+.|... .+.+++.+++.
T Consensus 299 ~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~------------~~~~~~a~ai~ 358 (462)
T PLN02846 299 HDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTY------------DDGKGFVRATL 358 (462)
T ss_pred HhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEec------------CCHHHHHHHHH
Confidence 77554 7765 33579999999999999976543 2 333 233334333 26789999999
Q ss_pred HHhc
Q 010093 468 EIMV 471 (518)
Q Consensus 468 ~ll~ 471 (518)
++|.
T Consensus 359 ~~l~ 362 (462)
T PLN02846 359 KALA 362 (462)
T ss_pred HHHc
Confidence 9997
No 80
>PLN02275 transferase, transferring glycosyl groups
Probab=98.56 E-value=0.00034 Score=70.72 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=52.0
Q ss_pred CCCcEeec-CccHHHh---hccCCCccccc----c--cC-chhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceee
Q 010093 376 GKGLIIRG-WAPQVLI---LDHEAVGGFVT----H--CG-WNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGV 444 (518)
Q Consensus 376 ~~nv~~~~-~~pq~~l---L~~~~~~~~It----H--gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l 444 (518)
-+|+++.. |+|+.++ |+.+++ +|. . -| .+++.||+++|+|+|+... ..+...+ +.-+.|..+
T Consensus 285 l~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv-~~g~~G~lv 357 (371)
T PLN02275 285 LRHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELV-KDGKNGLLF 357 (371)
T ss_pred CCceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHc-cCCCCeEEE
Confidence 35677655 7887655 766665 662 1 12 3579999999999998653 2355556 565678876
Q ss_pred ccccccccccCccChHHHHHHHHHHh
Q 010093 445 GIQKWCRIVGDFVKRETIEKAVNEIM 470 (518)
Q Consensus 445 ~~~~~~~~~~~~~~~~~l~~av~~ll 470 (518)
. ++++|.++|.++|
T Consensus 358 -----------~-~~~~la~~i~~l~ 371 (371)
T PLN02275 358 -----------S-SSSELADQLLELL 371 (371)
T ss_pred -----------C-CHHHHHHHHHHhC
Confidence 1 4788999998875
No 81
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.56 E-value=0.00011 Score=74.70 Aligned_cols=169 Identities=18% Similarity=0.141 Sum_probs=93.3
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHhC--CCcEEEEEcCCCCCCCCCCCCCCChhHHHHH----hc-CCCcEe-ecCccH
Q 010093 316 VVYVCFGSLANFTSAQLMEIATGLEAS--GRNFIWVVSKNKNDGGEGGNEDWLPEGFEKR----ME-GKGLII-RGWAPQ 387 (518)
Q Consensus 316 vIyvslGS~~~~~~~~~~~l~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~----~~-~~nv~~-~~~~pq 387 (518)
.+++..|.+. ..+.+..++++++.+ +.++++..++.. ..+ +-+.+... .. ..++++ .+++++
T Consensus 202 ~~i~~~Grl~--~~Kg~~~li~a~~~l~~~~~l~i~g~g~~----~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 271 (388)
T TIGR02149 202 PYILFVGRIT--RQKGVPHLLDAVHYIPKDVQVVLCAGAPD----TPE----VAEEVRQAVALLDRNRTGIIWINKMLPK 271 (388)
T ss_pred eEEEEEcccc--cccCHHHHHHHHHHHhhcCcEEEEeCCCC----cHH----HHHHHHHHHHHhccccCceEEecCCCCH
Confidence 4556667765 345667777888765 445555444322 001 11111111 11 234554 367775
Q ss_pred H---HhhccCCCcccccc----cCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChH
Q 010093 388 V---LILDHEAVGGFVTH----CGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRE 460 (518)
Q Consensus 388 ~---~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~ 460 (518)
. .++..+++ +|.= |...++.||+++|+|+|+... ......+ +..+.|..++... .+..-..+
T Consensus 272 ~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i-~~~~~G~~~~~~~----~~~~~~~~ 340 (388)
T TIGR02149 272 EELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVV-VDGETGFLVPPDN----SDADGFQA 340 (388)
T ss_pred HHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHh-hCCCceEEcCCCC----CcccchHH
Confidence 4 46766665 5531 334578999999999998654 3455556 4556788876540 00001128
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 010093 461 TIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEELR 511 (518)
Q Consensus 461 ~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 511 (518)
++.++|.++++ ++.-+ +++++..++.+.+..+.+...+++++...
T Consensus 341 ~l~~~i~~l~~---~~~~~---~~~~~~a~~~~~~~~s~~~~~~~~~~~y~ 385 (388)
T TIGR02149 341 ELAKAINILLA---DPELA---KKMGIAGRKRAEEEFSWGSIAKKTVEMYR 385 (388)
T ss_pred HHHHHHHHHHh---CHHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 89999999997 43333 33444444333445666666666665544
No 82
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.55 E-value=9.5e-05 Score=73.98 Aligned_cols=127 Identities=14% Similarity=0.119 Sum_probs=77.6
Q ss_pred CcEEEEecCCcccCCHHHHHHHHHHHHhC-----CCcEEEEEcCCCCCCCCCCCCCCChhHHHH---H-hcCCCcEeecC
Q 010093 314 YSVVYVCFGSLANFTSAQLMEIATGLEAS-----GRNFIWVVSKNKNDGGEGGNEDWLPEGFEK---R-MEGKGLIIRGW 384 (518)
Q Consensus 314 ~~vIyvslGS~~~~~~~~~~~l~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~---~-~~~~nv~~~~~ 384 (518)
+..+++..|++. +.+.+..+++++..+ +.++++.- .+. ..+.+.. . ...+|+.+.++
T Consensus 187 ~~~~~l~~g~~~--~~kg~~~li~a~~~l~~~~~~~~l~i~G-~g~-----------~~~~~~~~~~~~~~~~~v~~~g~ 252 (360)
T cd04951 187 DTFVILAVGRLV--EAKDYPNLLKAFAKLLSDYLDIKLLIAG-DGP-----------LRATLERLIKALGLSNRVKLLGL 252 (360)
T ss_pred CCEEEEEEeeCc--hhcCcHHHHHHHHHHHhhCCCeEEEEEc-CCC-----------cHHHHHHHHHhcCCCCcEEEecc
Confidence 346777778764 344455556665543 34555543 322 1122221 1 22468888888
Q ss_pred ccH-HHhhccCCCcccccc--cCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHH
Q 010093 385 APQ-VLILDHEAVGGFVTH--CGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRET 461 (518)
Q Consensus 385 ~pq-~~lL~~~~~~~~ItH--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~ 461 (518)
..+ ..++..+++-++-++ |..+++.||+++|+|+|+. |...+...+ +. .|..+.. .+.++
T Consensus 253 ~~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i-~~--~g~~~~~----------~~~~~ 315 (360)
T cd04951 253 RDDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVV-GD--SGLIVPI----------SDPEA 315 (360)
T ss_pred cccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEe-cC--CceEeCC----------CCHHH
Confidence 754 668877776222222 2257899999999999974 555566666 34 4555533 48899
Q ss_pred HHHHHHHHhc
Q 010093 462 IEKAVNEIMV 471 (518)
Q Consensus 462 l~~av~~ll~ 471 (518)
+.+++.++++
T Consensus 316 ~~~~i~~ll~ 325 (360)
T cd04951 316 LANKIDEILK 325 (360)
T ss_pred HHHHHHHHHh
Confidence 9999999984
No 83
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.55 E-value=0.00013 Score=80.64 Aligned_cols=181 Identities=12% Similarity=0.126 Sum_probs=101.8
Q ss_pred HHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHhCC-----CcEEEEEcCCCCCCCCCCCCCC---ChhHHHH--
Q 010093 303 ECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEASG-----RNFIWVVSKNKNDGGEGGNEDW---LPEGFEK-- 372 (518)
Q Consensus 303 ~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~~~-----~~~i~~~~~~~~~~~~~~~~~~---lp~~~~~-- 372 (518)
++..|+.. ++++ ++++.|.+. +.+.+..+++|+..+. ..+.+.++... +.+.+... .-..+..
T Consensus 469 ~l~r~~~~-pdkp-vIL~VGRL~--p~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gd---d~d~l~~~~~~~l~~L~~li 541 (1050)
T TIGR02468 469 EIMRFFTN-PRKP-MILALARPD--PKKNITTLVKAFGECRPLRELANLTLIMGNRD---DIDEMSSGSSSVLTSVLKLI 541 (1050)
T ss_pred HHHhhccc-CCCc-EEEEEcCCc--cccCHHHHHHHHHHhHhhccCCCEEEEEecCc---hhhhhhccchHHHHHHHHHH
Confidence 56667654 3444 445556654 4666777888887653 23444455432 11111000 0001111
Q ss_pred -H-hcCCCcEeecCccHHH---hhccCC--Ccccccc---cC-chhHHHHHHhCCceecCCcccccchhHHHHHHhhhcc
Q 010093 373 -R-MEGKGLIIRGWAPQVL---ILDHEA--VGGFVTH---CG-WNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIG 441 (518)
Q Consensus 373 -~-~~~~nv~~~~~~pq~~---lL~~~~--~~~~ItH---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G 441 (518)
+ ...++|.+.+++++.+ ++..++ .++||.- =| ..++.||+++|+|+|+....+ ....+ +....|
T Consensus 542 ~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII-~~g~nG 616 (1050)
T TIGR02468 542 DKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIH-RVLDNG 616 (1050)
T ss_pred HHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHh-ccCCcE
Confidence 1 1256788889988755 444331 1236653 34 369999999999999986533 33344 344567
Q ss_pred eeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 010093 442 VGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEELRL 512 (518)
Q Consensus 442 ~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 512 (518)
+.+++ .++++|.++|.++++ ++..+++..+-+. +.+. ..+-...++..++.+..
T Consensus 617 lLVdP----------~D~eaLA~AL~~LL~---Dpelr~~m~~~gr---~~v~-~FSWe~ia~~yl~~i~~ 670 (1050)
T TIGR02468 617 LLVDP----------HDQQAIADALLKLVA---DKQLWAECRQNGL---KNIH-LFSWPEHCKTYLSRIAS 670 (1050)
T ss_pred EEECC----------CCHHHHHHHHHHHhh---CHHHHHHHHHHHH---HHHH-HCCHHHHHHHHHHHHHH
Confidence 77755 488999999999997 5555444333322 2223 35556666666666553
No 84
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.53 E-value=0.00031 Score=75.89 Aligned_cols=115 Identities=11% Similarity=0.031 Sum_probs=66.0
Q ss_pred CCCcEeecCc-cH---HHhhcc-CC-Cccccc---ccC-chhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeec
Q 010093 376 GKGLIIRGWA-PQ---VLILDH-EA-VGGFVT---HCG-WNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVG 445 (518)
Q Consensus 376 ~~nv~~~~~~-pq---~~lL~~-~~-~~~~It---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~ 445 (518)
.++|.+.++. +. ..++.+ ++ .++||. .=| ..++.||+++|+|+|+.-.. ..+..+ +.-.-|..++
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~G----G~~EiV-~dg~tGfLVd 692 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFG----GPLEII-QDGVSGFHID 692 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHh-cCCCcEEEeC
Confidence 4678877764 32 234432 21 223553 223 35999999999999986543 456666 3555688886
Q ss_pred cccccccccCccChHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 010093 446 IQKWCRIVGDFVKRETIEKAVNEIMV-GDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIE 508 (518)
Q Consensus 446 ~~~~~~~~~~~~~~~~l~~av~~ll~-~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 508 (518)
.. +++++.++|.++++ -..|+..+ .++++..++.+.+..+-...++++++
T Consensus 693 p~----------D~eaLA~aL~~ll~kll~dp~~~---~~ms~~a~~rV~~~FSW~~~A~~ll~ 743 (784)
T TIGR02470 693 PY----------HGEEAAEKIVDFFEKCDEDPSYW---QKISQGGLQRIYEKYTWKIYSERLLT 743 (784)
T ss_pred CC----------CHHHHHHHHHHHHHHhcCCHHHH---HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 53 78889999988762 00033433 33444433333445555554555544
No 85
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.52 E-value=9.6e-05 Score=74.72 Aligned_cols=111 Identities=20% Similarity=0.166 Sum_probs=71.2
Q ss_pred CCcEeecCcc-HHHhhccCCCcccc--cc--cCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccc
Q 010093 377 KGLIIRGWAP-QVLILDHEAVGGFV--TH--CGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCR 451 (518)
Q Consensus 377 ~nv~~~~~~p-q~~lL~~~~~~~~I--tH--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~ 451 (518)
.++.+.++.. -..++..+++ +| ++ |-..++.||+++|+|+|+.... .+...+ +.-..|..++.
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i-~~~~~g~~~~~----- 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELV-QHGVTGALVPP----- 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHh-cCCCceEEeCC-----
Confidence 4566666544 3567877666 55 33 3457999999999999996653 345555 35456777644
Q ss_pred cccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 010093 452 IVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEEL 510 (518)
Q Consensus 452 ~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 510 (518)
.+.+++.++|.++++ ++..+. ++++..++.+.+..+...-++++.+..
T Consensus 323 -----~d~~~la~~i~~l~~---~~~~~~---~~~~~a~~~~~~~fs~~~~~~~~~~~y 370 (374)
T TIGR03088 323 -----GDAVALARALQPYVS---DPAARR---AHGAAGRARAEQQFSINAMVAAYAGLY 370 (374)
T ss_pred -----CCHHHHHHHHHHHHh---CHHHHH---HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 478999999999997 444332 344444444455666555555554433
No 86
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.52 E-value=2.3e-05 Score=77.63 Aligned_cols=127 Identities=14% Similarity=0.049 Sum_probs=77.3
Q ss_pred EEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHh--cCCCcEeecCccHHH---hh
Q 010093 317 VYVCFGSLANFTSAQLMEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRM--EGKGLIIRGWAPQVL---IL 391 (518)
Q Consensus 317 IyvslGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~~~~~~pq~~---lL 391 (518)
+++..|... ..+....++++++..+.++++.-.+.. . + .-....... ..+++.+.+++++.+ ++
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~----~-~----~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~ 241 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSD----P-D----YFYREIAPELLDGPDIEYLGEVGGAEKAELL 241 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCC----H-H----HHHHHHHHhcccCCcEEEeCCCCHHHHHHHH
Confidence 445567663 445566788888888877766543322 0 0 001111111 257999999999754 57
Q ss_pred ccCCCccccc--ccC-chhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHH
Q 010093 392 DHEAVGGFVT--HCG-WNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNE 468 (518)
Q Consensus 392 ~~~~~~~~It--HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ 468 (518)
+.+++-++-+ +-| ..++.||+++|+|+|+.... .+...+ +.-..|..+ . ..+++.+++.+
T Consensus 242 ~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i-~~~~~g~l~--~----------~~~~l~~~l~~ 304 (335)
T cd03802 242 GNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVV-EDGVTGFLV--D----------SVEELAAAVAR 304 (335)
T ss_pred HhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----Cchhhe-eCCCcEEEe--C----------CHHHHHHHHHH
Confidence 6666633323 234 35899999999999977552 333444 232255554 2 28899999999
Q ss_pred Hhc
Q 010093 469 IMV 471 (518)
Q Consensus 469 ll~ 471 (518)
++.
T Consensus 305 l~~ 307 (335)
T cd03802 305 ADR 307 (335)
T ss_pred Hhc
Confidence 875
No 87
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.50 E-value=0.00018 Score=72.03 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=86.6
Q ss_pred EEecCCcccCCHHHHHHHHHHHHhCC--CcEEEEEcCCCCCCCCCCCCCCChhHHH-HHhcCCCcEeecCccHHH---hh
Q 010093 318 YVCFGSLANFTSAQLMEIATGLEASG--RNFIWVVSKNKNDGGEGGNEDWLPEGFE-KRMEGKGLIIRGWAPQVL---IL 391 (518)
Q Consensus 318 yvslGS~~~~~~~~~~~l~~al~~~~--~~~i~~~~~~~~~~~~~~~~~~lp~~~~-~~~~~~nv~~~~~~pq~~---lL 391 (518)
++..|++. ..+.+..++++++.+. .+++ .+|... ..+. +-+... .....++|.+.+++|+.+ ++
T Consensus 196 i~~~G~~~--~~Kg~~~li~a~~~l~~~~~l~-ivG~~~---~~~~----~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~ 265 (363)
T cd04955 196 YLLVGRIV--PENNIDDLIEAFSKSNSGKKLV-IVGNAD---HNTP----YGKLLKEKAAADPRIIFVGPIYDQELLELL 265 (363)
T ss_pred EEEEeccc--ccCCHHHHHHHHHhhccCceEE-EEcCCC---Ccch----HHHHHHHHhCCCCcEEEccccChHHHHHHH
Confidence 34567765 3455667778887765 3443 344332 0101 111111 122357999999999865 45
Q ss_pred ccCCCcccccc----cCc-hhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHH
Q 010093 392 DHEAVGGFVTH----CGW-NSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAV 466 (518)
Q Consensus 392 ~~~~~~~~ItH----gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av 466 (518)
..+++ ++-+ .|. +++.||+++|+|+|+....+ +...+ +. .|...... +. +.+++
T Consensus 266 ~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~-~~--~g~~~~~~----------~~--l~~~i 324 (363)
T cd04955 266 RYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVL-GD--KAIYFKVG----------DD--LASLL 324 (363)
T ss_pred HhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceee-cC--CeeEecCc----------hH--HHHHH
Confidence 44444 4433 232 57999999999999865432 22223 22 34444322 22 99999
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 010093 467 NEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEE 509 (518)
Q Consensus 467 ~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 509 (518)
.++++ ++..+ .++++..++.+.+..+-....+++++.
T Consensus 325 ~~l~~---~~~~~---~~~~~~~~~~~~~~fs~~~~~~~~~~~ 361 (363)
T cd04955 325 EELEA---DPEEV---SAMAKAARERIREKYTWEKIADQYEEL 361 (363)
T ss_pred HHHHh---CHHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99997 44333 334555554445556666655555543
No 88
>PLN00142 sucrose synthase
Probab=98.46 E-value=6.8e-05 Score=80.95 Aligned_cols=112 Identities=8% Similarity=0.010 Sum_probs=62.5
Q ss_pred CCCcEeecC----ccHHHhhcc-C-CCccccc---ccCc-hhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeec
Q 010093 376 GKGLIIRGW----APQVLILDH-E-AVGGFVT---HCGW-NSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVG 445 (518)
Q Consensus 376 ~~nv~~~~~----~pq~~lL~~-~-~~~~~It---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~ 445 (518)
.++|.+.+. .+..++... . ..++||. +-|+ .++.||+++|+|+|+... ......+ +.-.-|..++
T Consensus 641 ~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV-~dG~tG~LV~ 715 (815)
T PLN00142 641 KGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEII-VDGVSGFHID 715 (815)
T ss_pred CCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHh-cCCCcEEEeC
Confidence 356665543 333445431 1 1233553 2454 489999999999998654 3455556 3544688876
Q ss_pred cccccccccCccChHHHHHHHHHH----hcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 010093 446 IQKWCRIVGDFVKRETIEKAVNEI----MVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIE 508 (518)
Q Consensus 446 ~~~~~~~~~~~~~~~~l~~av~~l----l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 508 (518)
+. +++++.++|.++ +. |+..+++ +++..++.+.+..+-....+++++
T Consensus 716 P~----------D~eaLA~aI~~lLekLl~---Dp~lr~~---mg~~Ar~rv~e~FSWe~~A~rll~ 766 (815)
T PLN00142 716 PY----------HGDEAANKIADFFEKCKE---DPSYWNK---ISDAGLQRIYECYTWKIYAERLLT 766 (815)
T ss_pred CC----------CHHHHHHHHHHHHHHhcC---CHHHHHH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 53 677888887654 44 4444433 333333333445554554555544
No 89
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.44 E-value=0.00049 Score=67.79 Aligned_cols=59 Identities=24% Similarity=0.268 Sum_probs=52.7
Q ss_pred cccccCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhc
Q 010093 399 FVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMV 471 (518)
Q Consensus 399 ~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~ 471 (518)
++-+||+| ..|++++|+|++.=|+...|.+-++++ +..|.|+.++ +++.|.+++..++.
T Consensus 327 lv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l-~~~ga~~~v~------------~~~~l~~~v~~l~~ 385 (419)
T COG1519 327 LVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERL-LQAGAGLQVE------------DADLLAKAVELLLA 385 (419)
T ss_pred ccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHH-HhcCCeEEEC------------CHHHHHHHHHHhcC
Confidence 56799997 689999999999999999999999999 6999999983 37888889988887
No 90
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.43 E-value=2.9e-05 Score=79.27 Aligned_cols=110 Identities=26% Similarity=0.261 Sum_probs=72.1
Q ss_pred cCCCcEeecCccH-HHhhccCCCcccc--cc--cCc-hhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeecccc
Q 010093 375 EGKGLIIRGWAPQ-VLILDHEAVGGFV--TH--CGW-NSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQK 448 (518)
Q Consensus 375 ~~~nv~~~~~~pq-~~lL~~~~~~~~I--tH--gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~ 448 (518)
..+||.+.+++++ ..++..+++ +| ++ .|. +.+.||+++|+|+|+.+...+.. . +..|.|..+.
T Consensus 278 ~~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~-~~~~~g~lv~--- 346 (397)
T TIGR03087 278 ALPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----D-ALPGAELLVA--- 346 (397)
T ss_pred cCCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----c-ccCCcceEeC---
Confidence 3568999999985 557777666 55 32 454 46999999999999988643321 1 1345676653
Q ss_pred ccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 010093 449 WCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEE 509 (518)
Q Consensus 449 ~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 509 (518)
.+++++.++|.++++ |+..+ +++++..++.+++..+-...++.+.+.
T Consensus 347 --------~~~~~la~ai~~ll~---~~~~~---~~~~~~ar~~v~~~fsw~~~~~~~~~~ 393 (397)
T TIGR03087 347 --------ADPADFAAAILALLA---NPAER---EELGQAARRRVLQHYHWPRNLARLDAL 393 (397)
T ss_pred --------CCHHHHHHHHHHHHc---CHHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 378999999999997 54433 334455554445566655555555443
No 91
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.41 E-value=0.00012 Score=73.23 Aligned_cols=86 Identities=14% Similarity=0.037 Sum_probs=58.8
Q ss_pred CCCcEeecCccH-HHhhccCCCcccccc----cCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeecccccc
Q 010093 376 GKGLIIRGWAPQ-VLILDHEAVGGFVTH----CGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWC 450 (518)
Q Consensus 376 ~~nv~~~~~~pq-~~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~ 450 (518)
.+++.+.++..+ ..++..+++ +|.- |-..++.||+++|+|+|+....+ ....+ +. +.|....
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~~----- 314 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLSL----- 314 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEeC-----
Confidence 568888887544 668877665 5532 44679999999999999865433 34445 34 5554442
Q ss_pred ccccCccChHHHHHHHHHHhcCChHHHHHHHH
Q 010093 451 RIVGDFVKRETIEKAVNEIMVGDRAEEMRSRA 482 (518)
Q Consensus 451 ~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a 482 (518)
..+++++.++|.++++ ++..+++.
T Consensus 315 -----~~~~~~~a~~i~~l~~---~~~~~~~~ 338 (358)
T cd03812 315 -----DESPEIWAEEILKLKS---EDRRERSS 338 (358)
T ss_pred -----CCCHHHHHHHHHHHHh---Ccchhhhh
Confidence 2468999999999998 54555444
No 92
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.37 E-value=0.00044 Score=71.99 Aligned_cols=199 Identities=13% Similarity=0.077 Sum_probs=103.5
Q ss_pred hCCcEEEeC-ccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHH--hC--CC
Q 010093 270 LGRRAWHIG-PVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLE--AS--GR 344 (518)
Q Consensus 270 ~~~~v~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~--~~--~~ 344 (518)
.+-++.+|| |+...... ..+.++..+-+.-.+++++|-+=-||...-=...+..++++.+ .+ +.
T Consensus 379 ~gv~v~yVGHPL~d~i~~-----------~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l 447 (608)
T PRK01021 379 SPLRTVYLGHPLVETISS-----------FSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTH 447 (608)
T ss_pred cCCCeEEECCcHHhhccc-----------CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCe
Confidence 468999999 77654220 0012333333333335678988889965422334445667766 43 34
Q ss_pred cEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCC---cEeecCccHHHhhccCCCcccccccCchhHHHHHHhCCceecC
Q 010093 345 NFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKG---LIIRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTW 421 (518)
Q Consensus 345 ~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n---v~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~ 421 (518)
+++....... ..+.+.......+ +.+..--...+++..+++ .+.-.|. -+.|+..+|+|||++
T Consensus 448 ~fvvp~a~~~-----------~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~ 513 (608)
T PRK01021 448 QLLVSSANPK-----------YDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETALNQTPTIVT 513 (608)
T ss_pred EEEEecCchh-----------hHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEE
Confidence 5554322211 1112222111111 222210012578877555 6666665 578999999999985
Q ss_pred Ccc-cccchhHHHHHHhh----------hcceeeccccccccc-cCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010093 422 PVA-AEQFYNEKMVNEIL----------KIGVGVGIQKWCRIV-GDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMA 489 (518)
Q Consensus 422 P~~-~DQ~~na~~v~e~~----------G~G~~l~~~~~~~~~-~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~ 489 (518)
=.. .=-...|++++ +. =+|..+-++ +-+ .++.+++.|.+++ ++|. |+.++++.++--+.+
T Consensus 514 YK~s~Lty~Iak~Lv-ki~i~yIsLpNIIagr~VvPE---llqgQ~~~tpe~La~~l-~lL~---d~~~r~~~~~~l~~l 585 (608)
T PRK01021 514 CQLRPFDTFLAKYIF-KIILPAYSLPNIILGSTIFPE---FIGGKKDFQPEEVAAAL-DILK---TSQSKEKQKDACRDL 585 (608)
T ss_pred EecCHHHHHHHHHHH-hccCCeeehhHHhcCCCcchh---hcCCcccCCHHHHHHHH-HHhc---CHHHHHHHHHHHHHH
Confidence 321 11223455554 31 112222111 111 1368999999997 7787 555666655555556
Q ss_pred HHHHhcCCCcHH
Q 010093 490 KRAVENGGSSYS 501 (518)
Q Consensus 490 ~~~~~~~g~~~~ 501 (518)
++.+.+|-.+-+
T Consensus 586 r~~Lg~~~~~~~ 597 (608)
T PRK01021 586 YQAMNESASTMK 597 (608)
T ss_pred HHHhcCCCCCHH
Confidence 655545544443
No 93
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.35 E-value=0.00037 Score=71.26 Aligned_cols=162 Identities=18% Similarity=0.158 Sum_probs=98.0
Q ss_pred cEEEEecCCcccCCHHHHHHHHHHHHhC---CCcE-EEEEcCCCCCCCCCCCCCCChhHHHHH----hcCCCcEeecCcc
Q 010093 315 SVVYVCFGSLANFTSAQLMEIATGLEAS---GRNF-IWVVSKNKNDGGEGGNEDWLPEGFEKR----MEGKGLIIRGWAP 386 (518)
Q Consensus 315 ~vIyvslGS~~~~~~~~~~~l~~al~~~---~~~~-i~~~~~~~~~~~~~~~~~~lp~~~~~~----~~~~nv~~~~~~p 386 (518)
+..+++.|.+. ..+.+..++++++.+ +..+ ++.+|.+. ..+.+... ...+++.+.+|+|
T Consensus 222 ~~~il~vGrl~--~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~-----------~~~~l~~~~~~~~l~~~V~~~G~~~ 288 (406)
T PRK15427 222 PLEIISVARLT--EKKGLHVAIEACRQLKEQGVAFRYRILGIGP-----------WERRLRTLIEQYQLEDVVEMPGFKP 288 (406)
T ss_pred CeEEEEEeCcc--hhcCHHHHHHHHHHHHhhCCCEEEEEEECch-----------hHHHHHHHHHHcCCCCeEEEeCCCC
Confidence 35566667765 345566666666644 2233 23334333 11222221 1246899999999
Q ss_pred HHH---hhccCCCccccc--c-------cCc-hhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccc
Q 010093 387 QVL---ILDHEAVGGFVT--H-------CGW-NSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIV 453 (518)
Q Consensus 387 q~~---lL~~~~~~~~It--H-------gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~ 453 (518)
+.+ ++..+++ ||. . -|. .+++||+++|+|+|+.... .....+ +.-..|..++.
T Consensus 289 ~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v-~~~~~G~lv~~------- 354 (406)
T PRK15427 289 SHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELV-EADKSGWLVPE------- 354 (406)
T ss_pred HHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----Cchhhh-cCCCceEEeCC-------
Confidence 755 5666555 553 2 344 5789999999999987543 334445 34456777754
Q ss_pred cCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 010093 454 GDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEELR 511 (518)
Q Consensus 454 ~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 511 (518)
-+.+++.++|.++++.++ +..+++++..++.+++..+.+...+++.+.++
T Consensus 355 ---~d~~~la~ai~~l~~~d~-----~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 355 ---NDAQALAQRLAAFSQLDT-----DELAPVVKRAREKVETDFNQQVINRELASLLQ 404 (406)
T ss_pred ---CCHHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 489999999999985122 23345555555555666777766666666554
No 94
>PLN02949 transferase, transferring glycosyl groups
Probab=98.34 E-value=0.0031 Score=65.37 Aligned_cols=114 Identities=13% Similarity=0.066 Sum_probs=64.9
Q ss_pred CCCcEeecCccHHH---hhccCCCccccc---ccCch-hHHHHHHhCCceecCCcccccchhHHHHHHhh-h-cceeecc
Q 010093 376 GKGLIIRGWAPQVL---ILDHEAVGGFVT---HCGWN-STLEAVAAGVPLVTWPVAAEQFYNEKMVNEIL-K-IGVGVGI 446 (518)
Q Consensus 376 ~~nv~~~~~~pq~~---lL~~~~~~~~It---HgG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~-G-~G~~l~~ 446 (518)
.++|.+.+++|+.+ +|..+++ +|+ +-|+| ++.||+++|+|+|+....+--. ..+.+.. | .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~---eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM---DIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc---eeeecCCCCcccccC--
Confidence 57899999998654 5666554 652 23443 8999999999999987543110 1110010 1 12221
Q ss_pred ccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 010093 447 QKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEELRL 512 (518)
Q Consensus 447 ~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 512 (518)
.+.+++.+++.++++.++ .. .+++++..++.++ .-|.+.-.+++.+.+..
T Consensus 407 ----------~~~~~la~ai~~ll~~~~--~~---r~~m~~~ar~~~~-~FS~e~~~~~~~~~i~~ 456 (463)
T PLN02949 407 ----------TTVEEYADAILEVLRMRE--TE---RLEIAAAARKRAN-RFSEQRFNEDFKDAIRP 456 (463)
T ss_pred ----------CCHHHHHHHHHHHHhCCH--HH---HHHHHHHHHHHHH-HcCHHHHHHHHHHHHHH
Confidence 278999999999996211 22 2233333333332 25555555555555443
No 95
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.34 E-value=4.6e-05 Score=76.31 Aligned_cols=125 Identities=14% Similarity=0.167 Sum_probs=83.3
Q ss_pred EEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHH---Hhhcc
Q 010093 317 VYVCFGSLANFTSAQLMEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQV---LILDH 393 (518)
Q Consensus 317 IyvslGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~---~lL~~ 393 (518)
.++..|.+. ..+....++++++.++.++++.-.+.. .+.+.. ...+||.+.+++|+. .++..
T Consensus 197 ~il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~~------------~~~l~~-~~~~~V~~~g~~~~~~~~~~~~~ 261 (351)
T cd03804 197 YYLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGPE------------LDRLRA-KAGPNVTFLGRVSDEELRDLYAR 261 (351)
T ss_pred EEEEEEcCc--cccChHHHHHHHHHCCCcEEEEECChh------------HHHHHh-hcCCCEEEecCCCHHHHHHHHHh
Confidence 345566665 345677788999988877665533321 112222 346799999999974 46767
Q ss_pred CCCcccccccCc-hhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhc
Q 010093 394 EAVGGFVTHCGW-NSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMV 471 (518)
Q Consensus 394 ~~~~~~ItHgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~ 471 (518)
+++-++-+.-|. .++.||+++|+|+|+....+ ....+ +..+.|..+.. .+++++.++|.++++
T Consensus 262 ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i-~~~~~G~~~~~----------~~~~~la~~i~~l~~ 325 (351)
T cd03804 262 ARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETV-IDGVTGILFEE----------QTVESLAAAVERFEK 325 (351)
T ss_pred CCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----Cccee-eCCCCEEEeCC----------CCHHHHHHHHHHHHh
Confidence 666333334444 46789999999999976533 33345 35567887754 378899999999997
No 96
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.30 E-value=1.5e-05 Score=79.28 Aligned_cols=129 Identities=16% Similarity=0.140 Sum_probs=74.1
Q ss_pred CCCcEEEEecCCcccCC-H---HHHHHHHHHHHhC-CCcEEEEEcCCCCCCCCCCCCCCChhHHHHHh-cCCCcEeecCc
Q 010093 312 QPYSVVYVCFGSLANFT-S---AQLMEIATGLEAS-GRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRM-EGKGLIIRGWA 385 (518)
Q Consensus 312 ~~~~vIyvslGS~~~~~-~---~~~~~l~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~ 385 (518)
.+++.|++++=...... + ..+..+++++.+. +.++||.+...+ . .-..+.... .-+|+++..-+
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p------~----~~~~i~~~l~~~~~v~~~~~l 247 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNP------R----GSDIIIEKLKKYDNVRLIEPL 247 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-H------H----HHHHHHHHHTT-TTEEEE---
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCc------h----HHHHHHHHhcccCCEEEECCC
Confidence 46779999985554444 3 3455556666666 678999987432 0 111111111 11489988777
Q ss_pred cH---HHhhccCCCcccccccCchhHH-HHHHhCCceecCCcccccchhHHHHH-HhhhcceeeccccccccccCccChH
Q 010093 386 PQ---VLILDHEAVGGFVTHCGWNSTL-EAVAAGVPLVTWPVAAEQFYNEKMVN-EILKIGVGVGIQKWCRIVGDFVKRE 460 (518)
Q Consensus 386 pq---~~lL~~~~~~~~ItHgG~~s~~-eal~~GvP~l~~P~~~DQ~~na~~v~-e~~G~G~~l~~~~~~~~~~~~~~~~ 460 (518)
++ ..+|.++++ +|+-.| ++. ||.++|+|+|.+ .++..|-. ...|..+.+ ..+.+
T Consensus 248 ~~~~~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~i------R~~geRqe~r~~~~nvlv-----------~~~~~ 306 (346)
T PF02350_consen 248 GYEEYLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNI------RDSGERQEGRERGSNVLV-----------GTDPE 306 (346)
T ss_dssp -HHHHHHHHHHESE--EEESSH--HHHHHGGGGT--EEEC------SSS-S-HHHHHTTSEEEE-----------TSSHH
T ss_pred CHHHHHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEe------cCCCCCHHHHhhcceEEe-----------CCCHH
Confidence 64 557777555 999998 566 999999999999 22222220 123444443 36899
Q ss_pred HHHHHHHHHhc
Q 010093 461 TIEKAVNEIMV 471 (518)
Q Consensus 461 ~l~~av~~ll~ 471 (518)
+|.+++++++.
T Consensus 307 ~I~~ai~~~l~ 317 (346)
T PF02350_consen 307 AIIQAIEKALS 317 (346)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999996
No 97
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.27 E-value=0.00033 Score=70.36 Aligned_cols=131 Identities=17% Similarity=0.209 Sum_probs=80.5
Q ss_pred CcEEEEecCCcc--c-CCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhc-CCCcEeecCccH--
Q 010093 314 YSVVYVCFGSLA--N-FTSAQLMEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRME-GKGLIIRGWAPQ-- 387 (518)
Q Consensus 314 ~~vIyvslGS~~--~-~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~~~pq-- 387 (518)
++.|+|++=... . ...+.+..+++++...+.++++..+... +.+ +.+-+.+..... .+|+.+.+-++.
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~----p~~--~~i~~~i~~~~~~~~~v~l~~~l~~~~ 274 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNAD----AGS--RIINEAIEEYVNEHPNFRLFKSLGQER 274 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCC----CCc--hHHHHHHHHHhcCCCCEEEECCCChHH
Confidence 458888875543 2 4467899999999988766666665432 000 001112222222 468888876654
Q ss_pred -HHhhccCCCcccccccCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHH
Q 010093 388 -VLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAV 466 (518)
Q Consensus 388 -~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av 466 (518)
..++.++++ +|+-++.+- .||.+.|+|+|.+- +-+ ... ..|..+.+- ..++++|.+++
T Consensus 275 ~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~----e~~-~~g~nvl~v----------g~~~~~I~~a~ 333 (365)
T TIGR03568 275 YLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ----KGR-LRADSVIDV----------DPDKEEIVKAI 333 (365)
T ss_pred HHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc----hhh-hhcCeEEEe----------CCCHHHHHHHH
Confidence 557777554 998875544 99999999999774 211 111 234333321 25789999999
Q ss_pred HHHhc
Q 010093 467 NEIMV 471 (518)
Q Consensus 467 ~~ll~ 471 (518)
.++++
T Consensus 334 ~~~~~ 338 (365)
T TIGR03568 334 EKLLD 338 (365)
T ss_pred HHHhC
Confidence 99663
No 98
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.26 E-value=0.00085 Score=66.98 Aligned_cols=91 Identities=15% Similarity=0.208 Sum_probs=60.7
Q ss_pred cCCCcEeecCccHH---HhhccCCCcccccc----cCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccc
Q 010093 375 EGKGLIIRGWAPQV---LILDHEAVGGFVTH----CGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQ 447 (518)
Q Consensus 375 ~~~nv~~~~~~pq~---~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~ 447 (518)
..+|+.+.+++|+. .++..+++ +|.- |..+++.||+++|+|+|+.... .....+ +. .|..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~-~~--~~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVA-GD--AALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----Ccccee-cC--ceeeeCC-
Confidence 46799999999875 46766665 4422 3356899999999999985442 222223 22 3444433
Q ss_pred cccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010093 448 KWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGK 487 (518)
Q Consensus 448 ~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~ 487 (518)
.+.+++.+++.+++. ++..+.+..+-+.
T Consensus 321 ---------~~~~~~~~~i~~l~~---~~~~~~~~~~~~~ 348 (365)
T cd03809 321 ---------LDPEALAAAIERLLE---DPALREELRERGL 348 (365)
T ss_pred ---------CCHHHHHHHHHHHhc---CHHHHHHHHHHHH
Confidence 478999999999997 6666665554443
No 99
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.26 E-value=0.00096 Score=66.41 Aligned_cols=199 Identities=19% Similarity=0.097 Sum_probs=108.9
Q ss_pred hhCCcEEEeC-ccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHhC-----
Q 010093 269 ALGRRAWHIG-PVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEAS----- 342 (518)
Q Consensus 269 ~~~~~v~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~~----- 342 (518)
..+-++.||| |+....... ..+....+.+ -.+++++|-+==||...-=...+..++++.+.+
T Consensus 150 ~~g~~~~~VGHPl~d~~~~~-----------~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p 217 (373)
T PF02684_consen 150 KHGVPVTYVGHPLLDEVKPE-----------PDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRP 217 (373)
T ss_pred ccCCCeEEECCcchhhhccC-----------CCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3457899999 876653211 0123333333 123566899988996532223334455555432
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCChhHHHHH--hcCCCcEeec-CccHHHhhccCCCcccccccCchhHHHHHHhCCcee
Q 010093 343 GRNFIWVVSKNKNDGGEGGNEDWLPEGFEKR--MEGKGLIIRG-WAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLV 419 (518)
Q Consensus 343 ~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~--~~~~nv~~~~-~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l 419 (518)
+.++++...... ..+.+... ....++.+.- .-.-.+++..+++ .+.-.|. .|.|+..+|+|||
T Consensus 218 ~l~fvvp~a~~~-----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SGT-aTLE~Al~g~P~V 283 (373)
T PF02684_consen 218 DLQFVVPVAPEV-----------HEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASGT-ATLEAALLGVPMV 283 (373)
T ss_pred CeEEEEecCCHH-----------HHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCCH-HHHHHHHhCCCEE
Confidence 446666543322 11111111 1123333322 2234667777555 5554443 6899999999998
Q ss_pred cCCcc-cccchhHHHHHHhhhc-ce-------eeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010093 420 TWPVA-AEQFYNEKMVNEILKI-GV-------GVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAK 490 (518)
Q Consensus 420 ~~P~~-~DQ~~na~~v~e~~G~-G~-------~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~ 490 (518)
++=-. .=-...|++++ +... |+ .+- .++- -++.+++.|.+++.++|+ |+..++......+.++
T Consensus 284 v~Yk~~~lt~~iak~lv-k~~~isL~Niia~~~v~---PEli-Q~~~~~~~i~~~~~~ll~---~~~~~~~~~~~~~~~~ 355 (373)
T PF02684_consen 284 VAYKVSPLTYFIAKRLV-KVKYISLPNIIAGREVV---PELI-QEDATPENIAAELLELLE---NPEKRKKQKELFREIR 355 (373)
T ss_pred EEEcCcHHHHHHHHHhh-cCCEeechhhhcCCCcc---hhhh-cccCCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHH
Confidence 85432 22233455553 2221 11 110 0111 136899999999999998 6666777777777777
Q ss_pred HHHhcCCCcHH
Q 010093 491 RAVENGGSSYS 501 (518)
Q Consensus 491 ~~~~~~g~~~~ 501 (518)
+....|.++.+
T Consensus 356 ~~~~~~~~~~~ 366 (373)
T PF02684_consen 356 QLLGPGASSRA 366 (373)
T ss_pred HhhhhccCCHH
Confidence 77667766665
No 100
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.24 E-value=0.00088 Score=67.70 Aligned_cols=112 Identities=16% Similarity=0.135 Sum_probs=68.6
Q ss_pred CCCcEeecCc--cH---HHhhccCCCccccccc---C-chhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeecc
Q 010093 376 GKGLIIRGWA--PQ---VLILDHEAVGGFVTHC---G-WNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGI 446 (518)
Q Consensus 376 ~~nv~~~~~~--pq---~~lL~~~~~~~~ItHg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~ 446 (518)
.+++.+.++. ++ ..+++.+++ |+.-. | ..++.||+++|+|+|+.... .....+ +.-..|..++
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i-~~~~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQI-EDGETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----Cchhhc-ccCCceEEeC-
Confidence 4578887776 43 246666555 66432 2 45999999999999986542 233445 3445565442
Q ss_pred ccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 010093 447 QKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEELRL 512 (518)
Q Consensus 447 ~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 512 (518)
+.+.+..++.+++. +++.++ ++++..++.+.+..+-...++++++.+++
T Consensus 323 -----------~~~~~a~~i~~ll~---~~~~~~---~~~~~a~~~~~~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 323 -----------TVEEAAVRILYLLR---DPELRR---KMGANAREHVRENFLITRHLKDYLYLISK 371 (372)
T ss_pred -----------CcHHHHHHHHHHHc---CHHHHH---HHHHHHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 35677889999997 545443 33333443335566666666776665543
No 101
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.21 E-value=0.004 Score=67.32 Aligned_cols=93 Identities=20% Similarity=0.231 Sum_probs=61.3
Q ss_pred CCCcEeecCccH-HHhhccCCCccccc---ccCc-hhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeecccccc
Q 010093 376 GKGLIIRGWAPQ-VLILDHEAVGGFVT---HCGW-NSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWC 450 (518)
Q Consensus 376 ~~nv~~~~~~pq-~~lL~~~~~~~~It---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~ 450 (518)
.++|++.+|.++ ..+|..+++ ||. +.|+ +++.||+++|+|+|+.... .....+ +.-..|..+...
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV-~dg~~GlLv~~~--- 642 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAV-QEGVTGLTLPAD--- 642 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHc-cCCCCEEEeCCC---
Confidence 478999999875 557777665 553 4554 7999999999999997653 344555 344468888764
Q ss_pred ccccCccChHHHHHHHHHHhc-CChHHHHHHHHH
Q 010093 451 RIVGDFVKRETIEKAVNEIMV-GDRAEEMRSRAK 483 (518)
Q Consensus 451 ~~~~~~~~~~~l~~av~~ll~-~~~~~~~~~~a~ 483 (518)
..+++++.+++.+++. -..++.++++++
T Consensus 643 -----d~~~~~La~aL~~ll~~l~~~~~l~~~ar 671 (694)
T PRK15179 643 -----TVTAPDVAEALARIHDMCAADPGIARKAA 671 (694)
T ss_pred -----CCChHHHHHHHHHHHhChhccHHHHHHHH
Confidence 4566677777777664 011345554443
No 102
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.11 E-value=0.0026 Score=66.39 Aligned_cols=166 Identities=13% Similarity=0.095 Sum_probs=87.6
Q ss_pred cEEEEecCCcccCCHHHHHHHHHHHHhC---CCcEEEEEcCCCCCCCCCCCCCCChhHHHHH--hcCCCcEe-ecCccH-
Q 010093 315 SVVYVCFGSLANFTSAQLMEIATGLEAS---GRNFIWVVSKNKNDGGEGGNEDWLPEGFEKR--MEGKGLII-RGWAPQ- 387 (518)
Q Consensus 315 ~vIyvslGS~~~~~~~~~~~l~~al~~~---~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~--~~~~nv~~-~~~~pq- 387 (518)
..+++..|.+. +.+.+..++++++.+ +.++++.-.+.. . +-+.+... ..+.++.+ .+|-.+
T Consensus 282 ~~~i~~vGRl~--~~KG~~~li~a~~~l~~~~~~lvivG~g~~------~----~~~~l~~l~~~~~~~v~~~~g~~~~~ 349 (466)
T PRK00654 282 APLFAMVSRLT--EQKGLDLVLEALPELLEQGGQLVLLGTGDP------E----LEEAFRALAARYPGKVGVQIGYDEAL 349 (466)
T ss_pred CcEEEEeeccc--cccChHHHHHHHHHHHhcCCEEEEEecCcH------H----HHHHHHHHHHHCCCcEEEEEeCCHHH
Confidence 35566667765 345556666666543 566666532211 0 11222211 12445543 455322
Q ss_pred -HHhhccCCCccccc---ccCc-hhHHHHHHhCCceecCCccc--ccchhHHHHHHhhhcceeeccccccccccCccChH
Q 010093 388 -VLILDHEAVGGFVT---HCGW-NSTLEAVAAGVPLVTWPVAA--EQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRE 460 (518)
Q Consensus 388 -~~lL~~~~~~~~It---HgG~-~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~ 460 (518)
..+++.+++ +|. +-|+ .+.+||+++|+|.|+....+ |...+...- +..+.|..++. .+++
T Consensus 350 ~~~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~-~~~~~G~lv~~----------~d~~ 416 (466)
T PRK00654 350 AHRIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPE-DGEATGFVFDD----------FNAE 416 (466)
T ss_pred HHHHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCC-CCCCceEEeCC----------CCHH
Confidence 246766665 553 3344 48899999999998864322 221111100 12266887754 4889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 010093 461 TIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEELR 511 (518)
Q Consensus 461 ~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 511 (518)
+|.+++.++++ ...-.+..+++++.. +++..+-...+++.++-.+
T Consensus 417 ~la~~i~~~l~---~~~~~~~~~~~~~~~---~~~~fsw~~~a~~~~~lY~ 461 (466)
T PRK00654 417 DLLRALRRALE---LYRQPPLWRALQRQA---MAQDFSWDKSAEEYLELYR 461 (466)
T ss_pred HHHHHHHHHHH---HhcCHHHHHHHHHHH---hccCCChHHHHHHHHHHHH
Confidence 99999999885 111112223333332 3556776666666655443
No 103
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.08 E-value=0.0021 Score=67.27 Aligned_cols=163 Identities=10% Similarity=0.022 Sum_probs=85.4
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHhC---CCcEEEEEcCCCCCCCCCCCCCCChhHHHHHh--cCCCcEeecCccHH--
Q 010093 316 VVYVCFGSLANFTSAQLMEIATGLEAS---GRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRM--EGKGLIIRGWAPQV-- 388 (518)
Q Consensus 316 vIyvslGS~~~~~~~~~~~l~~al~~~---~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~~~~~~pq~-- 388 (518)
.+++..|.+. ..+.+..+++++..+ +.++++.-.+.. . +-+.+.... .++|+.+..-.++.
T Consensus 297 ~~i~~vGrl~--~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~------~----~~~~~~~~~~~~~~~v~~~~~~~~~~~ 364 (476)
T cd03791 297 PLFGFVGRLT--EQKGIDLLLEALPELLELGGQLVILGSGDP------E----YEEALRELAARYPGRVAVLIGYDEALA 364 (476)
T ss_pred CEEEEEeecc--ccccHHHHHHHHHHHHHcCcEEEEEecCCH------H----HHHHHHHHHHhCCCcEEEEEeCCHHHH
Confidence 5566677765 344455555555543 455555433221 1 112222211 25677754433432
Q ss_pred -HhhccCCCcccccc---cCc-hhHHHHHHhCCceecCCccc--ccchhHHHHHHhhhcceeeccccccccccCccChHH
Q 010093 389 -LILDHEAVGGFVTH---CGW-NSTLEAVAAGVPLVTWPVAA--EQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRET 461 (518)
Q Consensus 389 -~lL~~~~~~~~ItH---gG~-~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~ 461 (518)
.++..+++ ++.- -|+ .+.+||+++|+|+|+....+ |...+...- ...|.|..+.. .++++
T Consensus 365 ~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~-~~~~~G~~~~~----------~~~~~ 431 (476)
T cd03791 365 HLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNED-TGEGTGFVFEG----------YNADA 431 (476)
T ss_pred HHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCC-CCCCCeEEeCC----------CCHHH
Confidence 36666555 5532 222 47899999999999765422 222111111 12347887754 47899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 010093 462 IEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEE 509 (518)
Q Consensus 462 l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 509 (518)
+.+++.++++ ...-++...++++... +..-+-+..+++.++.
T Consensus 432 l~~~i~~~l~---~~~~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~ 473 (476)
T cd03791 432 LLAALRRALA---LYRDPEAWRKLQRNAM---AQDFSWDRSAKEYLEL 473 (476)
T ss_pred HHHHHHHHHH---HHcCHHHHHHHHHHHh---ccCCChHHHHHHHHHH
Confidence 9999999985 2111333334444333 5555655555555543
No 104
>PLN02316 synthase/transferase
Probab=98.05 E-value=0.021 Score=63.77 Aligned_cols=170 Identities=11% Similarity=0.050 Sum_probs=95.3
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHhC---CCcEEEEEcCCCCCCCCCCCCCCChhHHHHHh------cCCCcEeecCcc
Q 010093 316 VVYVCFGSLANFTSAQLMEIATGLEAS---GRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRM------EGKGLIIRGWAP 386 (518)
Q Consensus 316 vIyvslGS~~~~~~~~~~~l~~al~~~---~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~------~~~nv~~~~~~p 386 (518)
.++...|-+. ..+.+.-|++|+..+ +.+++. +|.+. +. . +-+.+.... .++++.+....+
T Consensus 841 plVg~VGRL~--~qKGvdlLi~Al~~ll~~~~qlVI-vG~Gp---d~-~----~e~~l~~La~~Lg~~~~~rV~f~g~~d 909 (1036)
T PLN02316 841 PLVGIITRLT--HQKGIHLIKHAIWRTLERNGQVVL-LGSAP---DP-R----IQNDFVNLANQLHSSHHDRARLCLTYD 909 (1036)
T ss_pred eEEEEEeccc--cccCHHHHHHHHHHHhhcCcEEEE-EeCCC---CH-H----HHHHHHHHHHHhCccCCCeEEEEecCC
Confidence 3444444443 345566666776653 556655 45432 00 0 111222211 145676654445
Q ss_pred HH---HhhccCCCcccccc---cC-chhHHHHHHhCCceecCCccc--ccchhH----HHHHHh---hhcceeecccccc
Q 010093 387 QV---LILDHEAVGGFVTH---CG-WNSTLEAVAAGVPLVTWPVAA--EQFYNE----KMVNEI---LKIGVGVGIQKWC 450 (518)
Q Consensus 387 q~---~lL~~~~~~~~ItH---gG-~~s~~eal~~GvP~l~~P~~~--DQ~~na----~~v~e~---~G~G~~l~~~~~~ 450 (518)
.. .+++.+++ |+.- =| ..+.+||+++|.|.|+....+ |..... .+. +. .+-|..+.
T Consensus 910 e~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~-~~~g~~~tGflf~----- 981 (1036)
T PLN02316 910 EPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERA-QAQGLEPNGFSFD----- 981 (1036)
T ss_pred HHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccc-cccccCCceEEeC-----
Confidence 43 46755554 6632 22 358999999999888754322 221111 010 11 24566664
Q ss_pred ccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhh
Q 010093 451 RIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEELRLSR 514 (518)
Q Consensus 451 ~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 514 (518)
..+++.|..+|.++|. .|......+++..+.+++.+.|-...+++.++-...++
T Consensus 982 -----~~d~~aLa~AL~raL~-----~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~a~ 1035 (1036)
T PLN02316 982 -----GADAAGVDYALNRAIS-----AWYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHSAR 1035 (1036)
T ss_pred -----CCCHHHHHHHHHHHHh-----hhhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHh
Confidence 3589999999999996 44455566777777777788887777776666554443
No 105
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=97.96 E-value=3.5e-05 Score=63.95 Aligned_cols=120 Identities=18% Similarity=0.209 Sum_probs=78.6
Q ss_pred EEEEecCCcccC---CHHHHHHHHHHHHhCCC-cEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEe--ecCccH-H
Q 010093 316 VVYVCFGSLANF---TSAQLMEIATGLEASGR-NFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLII--RGWAPQ-V 388 (518)
Q Consensus 316 vIyvslGS~~~~---~~~~~~~l~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~--~~~~pq-~ 388 (518)
.+||+-||-... ..-.-.+..+.+.+.|. +.|...|.+.. ..|+......+...+.+ .+|-|- .
T Consensus 5 ~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~---------~~~d~~~~~~k~~gl~id~y~f~psl~ 75 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP---------FFGDPIDLIRKNGGLTIDGYDFSPSLT 75 (170)
T ss_pred EEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc---------CCCCHHHhhcccCCeEEEEEecCccHH
Confidence 799999997631 11111234566667776 78888887731 13333322212334443 466773 5
Q ss_pred HhhccCCCcccccccCchhHHHHHHhCCceecCCc----ccccchhHHHHHHhhhcceeeccc
Q 010093 389 LILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPV----AAEQFYNEKMVNEILKIGVGVGIQ 447 (518)
Q Consensus 389 ~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~~v~e~~G~G~~l~~~ 447 (518)
+....+++ +|+|+|.||+.|.|..|+|.++++- ---|-.-|..++ +.|.=..-.+.
T Consensus 76 e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~-~egyL~~C~ps 135 (170)
T KOG3349|consen 76 EDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLA-EEGYLYYCTPS 135 (170)
T ss_pred HHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHH-hcCcEEEeecc
Confidence 55545555 9999999999999999999999994 336788898885 77776655443
No 106
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.96 E-value=0.014 Score=61.01 Aligned_cols=158 Identities=13% Similarity=0.033 Sum_probs=87.5
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHhC---CCcEEEEEcCCCCCCCCCCCCCCChhHHHH--HhcCCCcEeecCccHH--
Q 010093 316 VVYVCFGSLANFTSAQLMEIATGLEAS---GRNFIWVVSKNKNDGGEGGNEDWLPEGFEK--RMEGKGLIIRGWAPQV-- 388 (518)
Q Consensus 316 vIyvslGS~~~~~~~~~~~l~~al~~~---~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~--~~~~~nv~~~~~~pq~-- 388 (518)
.+++..|.+.. .+.+..+++++..+ +.++++.-.+.. . +.+.+.. ...+.++.+....+..
T Consensus 292 ~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lvi~G~g~~------~----~~~~l~~~~~~~~~~v~~~~~~~~~~~ 359 (473)
T TIGR02095 292 PLFGVISRLTQ--QKGVDLLLAALPELLELGGQLVVLGTGDP------E----LEEALRELAERYPGNVRVIIGYDEALA 359 (473)
T ss_pred CEEEEEecCcc--ccChHHHHHHHHHHHHcCcEEEEECCCCH------H----HHHHHHHHHHHCCCcEEEEEcCCHHHH
Confidence 55566677653 44455555665543 456555432211 1 2222222 1234567766555543
Q ss_pred -HhhccCCCccccc---ccCc-hhHHHHHHhCCceecCCcccccchhHHHHHHhh------hcceeeccccccccccCcc
Q 010093 389 -LILDHEAVGGFVT---HCGW-NSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEIL------KIGVGVGIQKWCRIVGDFV 457 (518)
Q Consensus 389 -~lL~~~~~~~~It---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~------G~G~~l~~~~~~~~~~~~~ 457 (518)
.+++.+++ +|. +-|+ .+.+||+++|+|+|+....+ ....+ +.. +.|..+.. .
T Consensus 360 ~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v-~~~~~~~~~~~G~l~~~----------~ 422 (473)
T TIGR02095 360 HLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTV-VDGDPEAESGTGFLFEE----------Y 422 (473)
T ss_pred HHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceE-ecCCCCCCCCceEEeCC----------C
Confidence 46666555 553 2244 37899999999999865432 22222 222 67777754 4
Q ss_pred ChHHHHHHHHHHhcCChHHHHH---HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 010093 458 KRETIEKAVNEIMVGDRAEEMR---SRAKALGKMAKRAVENGGSSYSDLSALIEEL 510 (518)
Q Consensus 458 ~~~~l~~av~~ll~~~~~~~~~---~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 510 (518)
+++++.++|.+++. .|. +..+++++. ++++..|-+..+++.++-.
T Consensus 423 d~~~la~~i~~~l~-----~~~~~~~~~~~~~~~---~~~~~fsw~~~a~~~~~~Y 470 (473)
T TIGR02095 423 DPGALLAALSRALR-----LYRQDPSLWEALQKN---AMSQDFSWDKSAKQYVELY 470 (473)
T ss_pred CHHHHHHHHHHHHH-----HHhcCHHHHHHHHHH---HhccCCCcHHHHHHHHHHH
Confidence 88999999999885 122 222333333 3355677666666665543
No 107
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.95 E-value=0.0017 Score=63.52 Aligned_cols=161 Identities=17% Similarity=0.097 Sum_probs=96.4
Q ss_pred CcEEEEecCCcccCCHHHHHHHHHHHHhC---CCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEee---cCccH
Q 010093 314 YSVVYVCFGSLANFTSAQLMEIATGLEAS---GRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIR---GWAPQ 387 (518)
Q Consensus 314 ~~vIyvslGS~~~~~~~~~~~l~~al~~~---~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~---~~~pq 387 (518)
+..|++|+=-..+.. +.+..+++++.+. ...+...++-.. . ..+.+ +. +....+.+|+++. +|.+.
T Consensus 204 ~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~---~-~~v~e--~~-~~~L~~~~~v~li~pl~~~~f 275 (383)
T COG0381 204 KKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHP---R-PRVRE--LV-LKRLKNVERVKLIDPLGYLDF 275 (383)
T ss_pred CcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCC---C-hhhhH--HH-HHHhCCCCcEEEeCCcchHHH
Confidence 448888765544444 5566666655542 134455555443 0 01111 11 1222234467764 45567
Q ss_pred HHhhccCCCcccccccCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHH
Q 010093 388 VLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVN 467 (518)
Q Consensus 388 ~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~ 467 (518)
..++.++ .+++|-.|. -.-||-..|+|++++=..-+++. ++ ..|.-..+ ..+.+.|.+++.
T Consensus 276 ~~L~~~a--~~iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~v--~agt~~lv-----------g~~~~~i~~~~~ 336 (383)
T COG0381 276 HNLMKNA--FLILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---GV--EAGTNILV-----------GTDEENILDAAT 336 (383)
T ss_pred HHHHHhc--eEEEecCCc-hhhhHHhcCCcEEeeccCCCCcc---ce--ecCceEEe-----------CccHHHHHHHHH
Confidence 7888884 458888664 56799999999999999999985 33 34544444 357799999999
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 010093 468 EIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEELRL 512 (518)
Q Consensus 468 ~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 512 (518)
++++ ++++.++..... ..-|... +.+++++.+..
T Consensus 337 ~ll~---~~~~~~~m~~~~-------npYgdg~-as~rIv~~l~~ 370 (383)
T COG0381 337 ELLE---DEEFYERMSNAK-------NPYGDGN-ASERIVEILLN 370 (383)
T ss_pred HHhh---ChHHHHHHhccc-------CCCcCcc-hHHHHHHHHHH
Confidence 9998 555555433222 3333333 45666666654
No 108
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.92 E-value=0.0013 Score=67.59 Aligned_cols=78 Identities=14% Similarity=-0.017 Sum_probs=51.8
Q ss_pred CCCcEeecCccHHH---hhccCCCcccccc---cC-chhHHHHHHhCCceecCCcccccchhHHHHHH---hhhcceeec
Q 010093 376 GKGLIIRGWAPQVL---ILDHEAVGGFVTH---CG-WNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNE---ILKIGVGVG 445 (518)
Q Consensus 376 ~~nv~~~~~~pq~~---lL~~~~~~~~ItH---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e---~~G~G~~l~ 445 (518)
.++|.+.+++|+.+ +|..+++ +|+- -| ..++.||+++|+|+|+.-..+. ..-+++ .-..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp----~~~iv~~~~~g~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP----LLDIVVPWDGGPTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC----chheeeccCCCCceEEe-
Confidence 46899999998654 6766555 4431 12 3488999999999997654321 112212 23455543
Q ss_pred cccccccccCccChHHHHHHHHHHhc
Q 010093 446 IQKWCRIVGDFVKRETIEKAVNEIMV 471 (518)
Q Consensus 446 ~~~~~~~~~~~~~~~~l~~av~~ll~ 471 (518)
. +++++.+++.++++
T Consensus 377 ----------~-d~~~la~ai~~ll~ 391 (419)
T cd03806 377 ----------S-TAEEYAEAIEKILS 391 (419)
T ss_pred ----------C-CHHHHHHHHHHHHh
Confidence 2 78999999999997
No 109
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.89 E-value=0.037 Score=55.90 Aligned_cols=77 Identities=19% Similarity=0.103 Sum_probs=51.6
Q ss_pred CCCcEeecCccHHH---hhccCCCcccc------cccCc-hhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeec
Q 010093 376 GKGLIIRGWAPQVL---ILDHEAVGGFV------THCGW-NSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVG 445 (518)
Q Consensus 376 ~~nv~~~~~~pq~~---lL~~~~~~~~I------tHgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~ 445 (518)
.+||++.+++|+.+ .+.+.++.++- +.++. +.+.|++++|+|+|..+. ...+ +..+ |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYED-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcC-cEEEe
Confidence 47999999999655 56666653221 23333 468999999999998763 2223 2333 33332
Q ss_pred cccccccccCccChHHHHHHHHHHhc
Q 010093 446 IQKWCRIVGDFVKRETIEKAVNEIMV 471 (518)
Q Consensus 446 ~~~~~~~~~~~~~~~~l~~av~~ll~ 471 (518)
.-+++++.++|.+++.
T Consensus 324 ----------~~d~~~~~~ai~~~l~ 339 (373)
T cd04950 324 ----------ADDPEEFVAAIEKALL 339 (373)
T ss_pred ----------CCCHHHHHHHHHHHHh
Confidence 2379999999999876
No 110
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.84 E-value=0.018 Score=56.40 Aligned_cols=213 Identities=16% Similarity=0.153 Sum_probs=105.1
Q ss_pred cchHHHHHHHHhhCCcEEEeC-ccccCCcCchhhhhcCCCCCcChhHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHH
Q 010093 258 LEPAYADHYRKALGRRAWHIG-PVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIA 336 (518)
Q Consensus 258 L~~~~~~~~~~~~~~~v~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~ 336 (518)
+|+++++ ..+-+..||| |+....+-.. .++....-+.-..++.++.+--||...--......+.
T Consensus 146 FE~~~y~----k~g~~~~yVGHpl~d~i~~~~-----------~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~ 210 (381)
T COG0763 146 FEPAFYD----KFGLPCTYVGHPLADEIPLLP-----------DREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFV 210 (381)
T ss_pred CCHHHHH----hcCCCeEEeCChhhhhccccc-----------cHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHH
Confidence 4555443 2334589999 7665432110 1233333343333566999999997542122222344
Q ss_pred HHHHhC-----CCcEEEEEcCCCCCCCCCCCCCCChhHHHHHh-cCCCcEeecCc-c-H-HHhhccCCCcccccccCchh
Q 010093 337 TGLEAS-----GRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRM-EGKGLIIRGWA-P-Q-VLILDHEAVGGFVTHCGWNS 407 (518)
Q Consensus 337 ~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~-p-q-~~lL~~~~~~~~ItHgG~~s 407 (518)
+++..+ +.+|+.-+.... . +....+. +.......-++ . + .+++..+++ .+.-+|. -
T Consensus 211 ~a~~~l~~~~~~~~~vlp~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT-~ 275 (381)
T COG0763 211 QAAQELKARYPDLKFVLPLVNAK-----------Y-RRIIEEALKWEVAGLSLILIDGEKRKAFAAADA--ALAASGT-A 275 (381)
T ss_pred HHHHHHHhhCCCceEEEecCcHH-----------H-HHHHHHHhhccccCceEEecCchHHHHHHHhhH--HHHhccH-H
Confidence 444433 457777654422 0 0111111 11110111122 2 1 335645444 6666655 4
Q ss_pred HHHHHHhCCceecCCccc-ccchhHHHHHHhhhcc--------eeeccccccccccCccChHHHHHHHHHHhcCC-hHHH
Q 010093 408 TLEAVAAGVPLVTWPVAA-EQFYNEKMVNEILKIG--------VGVGIQKWCRIVGDFVKRETIEKAVNEIMVGD-RAEE 477 (518)
Q Consensus 408 ~~eal~~GvP~l~~P~~~-DQ~~na~~v~e~~G~G--------~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~-~~~~ 477 (518)
+.|+..+|+|||+.=-.. =-+..|++++ ..... ..+-++ .. .+..+++.|.+++.+++.++ ....
T Consensus 276 tLE~aL~g~P~Vv~Yk~~~it~~iak~lv-k~~yisLpNIi~~~~ivPE---li-q~~~~pe~la~~l~~ll~~~~~~~~ 350 (381)
T COG0763 276 TLEAALAGTPMVVAYKVKPITYFIAKRLV-KLPYVSLPNILAGREIVPE---LI-QEDCTPENLARALEELLLNGDRREA 350 (381)
T ss_pred HHHHHHhCCCEEEEEeccHHHHHHHHHhc-cCCcccchHHhcCCccchH---HH-hhhcCHHHHHHHHHHHhcChHhHHH
Confidence 789999999999742111 1122344443 22211 111110 00 13678999999999999832 2245
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 010093 478 MRSRAKALGKMAKRAVENGGSSYSDLSALIEE 509 (518)
Q Consensus 478 ~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 509 (518)
+++...+|...++ ++++++.+.+.+++.
T Consensus 351 ~~~~~~~l~~~l~----~~~~~e~aA~~vl~~ 378 (381)
T COG0763 351 LKEKFRELHQYLR----EDPASEIAAQAVLEL 378 (381)
T ss_pred HHHHHHHHHHHHc----CCcHHHHHHHHHHHH
Confidence 6666666666655 444555555555543
No 111
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.80 E-value=0.00034 Score=71.05 Aligned_cols=174 Identities=19% Similarity=0.200 Sum_probs=94.4
Q ss_pred CCcEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHH-hcCCCcEeecCccHHHhh
Q 010093 313 PYSVVYVCFGSLANFTSAQLMEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKR-MEGKGLIIRGWAPQVLIL 391 (518)
Q Consensus 313 ~~~vIyvslGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~nv~~~~~~pq~~lL 391 (518)
+..++|.||......+++.+..-.+-|++.+.-.+|...... .-...+-..+... ..++.+.+.++.|+.+-|
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~------~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl 356 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPA------SGEARLRRRFAAHGVDPDRIIFSPVAPREEHL 356 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETST------THHHHHHHHHHHTTS-GGGEEEEE---HHHHH
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCH------HHHHHHHHHHHHcCCChhhEEEcCCCCHHHHH
Confidence 455999999999999999999999999999999999886543 1000011111111 135678888888865543
Q ss_pred cc-CCCccc---ccccCchhHHHHHHhCCceecCCc-ccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHH
Q 010093 392 DH-EAVGGF---VTHCGWNSTLEAVAAGVPLVTWPV-AAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAV 466 (518)
Q Consensus 392 ~~-~~~~~~---ItHgG~~s~~eal~~GvP~l~~P~-~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av 466 (518)
.. ..++++ ...+|..|++|||+.|||+|.+|- ..=...-|..+ +.+|+...+. .+.++-.+..
T Consensus 357 ~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL-~~lGl~ElIA-----------~s~~eYv~~A 424 (468)
T PF13844_consen 357 RRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASIL-RALGLPELIA-----------DSEEEYVEIA 424 (468)
T ss_dssp HHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHH-HHHT-GGGB------------SSHHHHHHHH
T ss_pred HHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHH-HHcCCchhcC-----------CCHHHHHHHH
Confidence 22 223334 356788999999999999999994 33334455666 5788876653 3445544444
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 010093 467 NEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEELRL 512 (518)
Q Consensus 467 ~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 512 (518)
-++-+ |.+++ +.+++++++.+...- -.+...+++.|+.
T Consensus 425 v~La~---D~~~l---~~lR~~Lr~~~~~Sp--Lfd~~~~ar~lE~ 462 (468)
T PF13844_consen 425 VRLAT---DPERL---RALRAKLRDRRSKSP--LFDPKRFARNLEA 462 (468)
T ss_dssp HHHHH----HHHH---HHHHHHHHHHHHHSG--GG-HHHHHHHHHH
T ss_pred HHHhC---CHHHH---HHHHHHHHHHHhhCC--CCCHHHHHHHHHH
Confidence 45554 54544 344455554433322 2344666666664
No 112
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.69 E-value=0.00035 Score=71.51 Aligned_cols=161 Identities=16% Similarity=0.151 Sum_probs=98.8
Q ss_pred cEEEEecCCcccCCHHHHHHHHHHHHhC-----CCcEEEEEcCCCCCCCCCCCCCCChhHHHHH----hcCCCcEeecCc
Q 010093 315 SVVYVCFGSLANFTSAQLMEIATGLEAS-----GRNFIWVVSKNKNDGGEGGNEDWLPEGFEKR----MEGKGLIIRGWA 385 (518)
Q Consensus 315 ~vIyvslGS~~~~~~~~~~~l~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~----~~~~nv~~~~~~ 385 (518)
+..+++.|.+.. .+.+..+++++..+ +.++.|..-++. + .-+.+... ...+++.+.+|+
T Consensus 230 ~~~il~~Grl~~--~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g------~----~~~~l~~~~~~~~~~~~V~f~G~v 297 (407)
T cd04946 230 TLRIVSCSYLVP--VKRVDLIIKALAALAKARPSIKIKWTHIGGG------P----LEDTLKELAESKPENISVNFTGEL 297 (407)
T ss_pred CEEEEEeecccc--ccCHHHHHHHHHHHHHhCCCceEEEEEEeCc------h----HHHHHHHHHHhcCCCceEEEecCC
Confidence 356677777653 34455566666543 236666654432 1 11122211 124578899999
Q ss_pred cHHH---hhccCCCccccccc---C-chhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccC
Q 010093 386 PQVL---ILDHEAVGGFVTHC---G-WNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVK 458 (518)
Q Consensus 386 pq~~---lL~~~~~~~~ItHg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~ 458 (518)
++.+ ++...++.+||... | .++++||+++|+|+|+... ......+ +..+.|..+.. ..+
T Consensus 298 ~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i-~~~~~G~l~~~---------~~~ 363 (407)
T cd04946 298 SNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIV-DNGGNGLLLSK---------DPT 363 (407)
T ss_pred ChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHh-cCCCcEEEeCC---------CCC
Confidence 9765 44444455566433 2 4689999999999998553 3355566 45447877754 358
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 010093 459 RETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALI 507 (518)
Q Consensus 459 ~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 507 (518)
.+++.++|.++++ ++..+ .++++..++.+++..+.......++
T Consensus 364 ~~~la~~I~~ll~---~~~~~---~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 364 PNELVSSLSKFID---NEEEY---QTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred HHHHHHHHHHHHh---CHHHH---HHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 8999999999997 44443 4456666666677777666555543
No 113
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.62 E-value=0.00055 Score=60.75 Aligned_cols=141 Identities=17% Similarity=0.188 Sum_probs=85.8
Q ss_pred CCcEEEEecCCcccCCHHHHHHHHHHHHhC-----CCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccH
Q 010093 313 PYSVVYVCFGSLANFTSAQLMEIATGLEAS-----GRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQ 387 (518)
Q Consensus 313 ~~~vIyvslGS~~~~~~~~~~~l~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq 387 (518)
+++.+++..|.... .+.+..+++++..+ +.-.++.++... ....+-..........++.+.+++++
T Consensus 13 ~~~~~il~~g~~~~--~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~-------~~~~~~~~~~~~~~~~~i~~~~~~~~ 83 (172)
T PF00534_consen 13 DKKKIILFIGRLDP--EKGIDLLIEAFKKLKEKKNPNYKLVIVGDGE-------YKKELKNLIEKLNLKENIIFLGYVPD 83 (172)
T ss_dssp TTSEEEEEESESSG--GGTHHHHHHHHHHHHHHHHTTEEEEEESHCC-------HHHHHHHHHHHTTCGTTEEEEESHSH
T ss_pred CCCeEEEEEecCcc--ccCHHHHHHHHHHHHhhcCCCeEEEEEcccc-------cccccccccccccccccccccccccc
Confidence 45577777888654 45555666666643 333444444222 00001011111223568999999983
Q ss_pred ---HHhhccCCCcccccc----cCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChH
Q 010093 388 ---VLILDHEAVGGFVTH----CGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRE 460 (518)
Q Consensus 388 ---~~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~ 460 (518)
..++..+++ +|+. |...++.||+++|+|+|+. |...+...+ ...+.|..++. .+.+
T Consensus 84 ~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~-~~~~~g~~~~~----------~~~~ 146 (172)
T PF00534_consen 84 DELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEII-NDGVNGFLFDP----------NDIE 146 (172)
T ss_dssp HHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHS-GTTTSEEEEST----------TSHH
T ss_pred ccccccccccee--ccccccccccccccccccccccceeec----cccCCceee-ccccceEEeCC----------CCHH
Confidence 457767555 7765 5667999999999999974 455556666 46566787754 4999
Q ss_pred HHHHHHHHHhcCChHHHHHHHH
Q 010093 461 TIEKAVNEIMVGDRAEEMRSRA 482 (518)
Q Consensus 461 ~l~~av~~ll~~~~~~~~~~~a 482 (518)
++.++|.+++. ++..++..
T Consensus 147 ~l~~~i~~~l~---~~~~~~~l 165 (172)
T PF00534_consen 147 ELADAIEKLLN---DPELRQKL 165 (172)
T ss_dssp HHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHC---CHHHHHHH
Confidence 99999999998 66444443
No 114
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.60 E-value=0.019 Score=58.70 Aligned_cols=114 Identities=12% Similarity=0.101 Sum_probs=66.4
Q ss_pred EEEecCCcccCCHHHHHHHHHHHHhCCCcE-EEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCcc-H---HHhh
Q 010093 317 VYVCFGSLANFTSAQLMEIATGLEASGRNF-IWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAP-Q---VLIL 391 (518)
Q Consensus 317 IyvslGS~~~~~~~~~~~l~~al~~~~~~~-i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~p-q---~~lL 391 (518)
+++..|.......+.+..+++|+..++..+ ++.+|.+. . . . .+++...++.. + ..++
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~----~-~----~---------~~~v~~~g~~~~~~~l~~~y 304 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFS----P-F----T---------AGNVVNHGFETDKRKLMSAL 304 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCC----c-c----c---------ccceEEecCcCCHHHHHHHH
Confidence 334445433334455677899998876543 34444432 0 0 1 23566666653 3 3345
Q ss_pred ccCCCcccccc----cCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHH
Q 010093 392 DHEAVGGFVTH----CGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAV 466 (518)
Q Consensus 392 ~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av 466 (518)
..+++ ||.- |-..++.||+++|+|+|+....+ ....+ ..+-|..++.. ++++|.+++
T Consensus 305 ~~aDv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv--~~~~G~lv~~~----------d~~~La~~~ 365 (405)
T PRK10125 305 NQMDA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVL--QKSGGKTVSEE----------EVLQLAQLS 365 (405)
T ss_pred HhCCE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhE--eCCcEEEECCC----------CHHHHHhcc
Confidence 44444 5542 33468999999999999987754 22233 23568888653 777787654
No 115
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.54 E-value=0.0087 Score=60.31 Aligned_cols=82 Identities=16% Similarity=0.206 Sum_probs=58.8
Q ss_pred CCCcEeecCccH-HHhhccCCCcccccc--cCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeecccccccc
Q 010093 376 GKGLIIRGWAPQ-VLILDHEAVGGFVTH--CGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRI 452 (518)
Q Consensus 376 ~~nv~~~~~~pq-~~lL~~~~~~~~ItH--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~ 452 (518)
.+++.+.++.++ ..++..+++-++.++ |...++.||+++|+|+|+..... .....+ +.-..|..++.
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v-~~~~~G~lv~~------ 329 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEII-EDGENGYLVPK------ 329 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHc-ccCCCceEeCC------
Confidence 457888887765 567888777555555 33569999999999999864321 133445 35567777754
Q ss_pred ccCccChHHHHHHHHHHhc
Q 010093 453 VGDFVKRETIEKAVNEIMV 471 (518)
Q Consensus 453 ~~~~~~~~~l~~av~~ll~ 471 (518)
.+.+++.++|.+++.
T Consensus 330 ----~d~~~la~~i~~ll~ 344 (372)
T cd04949 330 ----GDIEALAEAIIELLN 344 (372)
T ss_pred ----CcHHHHHHHHHHHHc
Confidence 489999999999997
No 116
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.0008 Score=54.99 Aligned_cols=127 Identities=16% Similarity=0.206 Sum_probs=79.7
Q ss_pred EEEecCCcccCCHHHHHH--HHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecC--cc-HHHhh
Q 010093 317 VYVCFGSLANFTSAQLME--IATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGW--AP-QVLIL 391 (518)
Q Consensus 317 IyvslGS~~~~~~~~~~~--l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~--~p-q~~lL 391 (518)
|||+-||....=...+.. +.+-.+.-..++|..+|.+. ..|- ....+.+| -+ -+.+-
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d----------~kpv--------agl~v~~F~~~~kiQsli 63 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGD----------IKPV--------AGLRVYGFDKEEKIQSLI 63 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCC----------cccc--------cccEEEeechHHHHHHHh
Confidence 789999973210111111 22222223458899998865 1221 13344444 34 45566
Q ss_pred ccCCCcccccccCchhHHHHHHhCCceecCCccc--------ccchhHHHHHHhhhcceeeccccccccccCccChHHHH
Q 010093 392 DHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAA--------EQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIE 463 (518)
Q Consensus 392 ~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~--------DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~ 463 (518)
..++ .+|+|+|.||+..++..++|.+++|--. .|-..|..++ +.+.=+...+. +..-.+.+.
T Consensus 64 ~dar--IVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kla-e~~~vv~~spt-------e~~L~a~l~ 133 (161)
T COG5017 64 HDAR--IVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLA-EINYVVACSPT-------ELVLQAGLQ 133 (161)
T ss_pred hcce--EEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHH-hcCceEEEcCC-------chhhHHhHh
Confidence 5655 4999999999999999999999999644 4677788886 78887877654 111345555
Q ss_pred HHHHHHhc
Q 010093 464 KAVNEIMV 471 (518)
Q Consensus 464 ~av~~ll~ 471 (518)
..+.+++.
T Consensus 134 ~s~~~v~~ 141 (161)
T COG5017 134 VSVADVLH 141 (161)
T ss_pred hhhhhhcC
Confidence 55556664
No 117
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.49 E-value=0.053 Score=56.87 Aligned_cols=134 Identities=13% Similarity=0.118 Sum_probs=79.4
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHhC----CCcEEEEEcCCCCCCCCCCCCCCChhHHHHH----hcCCCcEeecCccH
Q 010093 316 VVYVCFGSLANFTSAQLMEIATGLEAS----GRNFIWVVSKNKNDGGEGGNEDWLPEGFEKR----MEGKGLIIRGWAPQ 387 (518)
Q Consensus 316 vIyvslGS~~~~~~~~~~~l~~al~~~----~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~----~~~~nv~~~~~~pq 387 (518)
.++++.|.+. +.+.+..+++|++.+ +.--+..+|.+. ..+.+... ...++|.+.++.+.
T Consensus 320 ~~il~vGrl~--~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~-----------~~~~l~~~i~~~~l~~~V~f~G~~~~ 386 (500)
T TIGR02918 320 FSIITASRLA--KEKHIDWLVKAVVKAKKSVPELTFDIYGEGG-----------EKQKLQKIINENQAQDYIHLKGHRNL 386 (500)
T ss_pred eEEEEEeccc--cccCHHHHHHHHHHHHhhCCCeEEEEEECch-----------hHHHHHHHHHHcCCCCeEEEcCCCCH
Confidence 4556667765 455666677777643 222233445443 11222221 12467888899888
Q ss_pred HHhhccCCCccccc---ccC-chhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccC-hHHH
Q 010093 388 VLILDHEAVGGFVT---HCG-WNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVK-RETI 462 (518)
Q Consensus 388 ~~lL~~~~~~~~It---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~-~~~l 462 (518)
..++..+++ +|. .-| ..+++||+++|+|+|+....+ .+...+ +.-.-|..+.... +.++.-+ .++|
T Consensus 387 ~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI-~~g~nG~lv~~~~---~~~d~~~~~~~l 457 (500)
T TIGR02918 387 SEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFI-EDNKNGYLIPIDE---EEDDEDQIITAL 457 (500)
T ss_pred HHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHc-cCCCCEEEEeCCc---cccchhHHHHHH
Confidence 889988666 554 334 469999999999999965421 234444 3444577665310 0000112 7889
Q ss_pred HHHHHHHhc
Q 010093 463 EKAVNEIMV 471 (518)
Q Consensus 463 ~~av~~ll~ 471 (518)
.++|.++++
T Consensus 458 a~~I~~ll~ 466 (500)
T TIGR02918 458 AEKIVEYFN 466 (500)
T ss_pred HHHHHHHhC
Confidence 999999995
No 118
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.46 E-value=0.0036 Score=63.45 Aligned_cols=114 Identities=18% Similarity=0.146 Sum_probs=77.1
Q ss_pred CCCcEeecCccHHH---hhccCCCccccc----ccCc-hhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccc
Q 010093 376 GKGLIIRGWAPQVL---ILDHEAVGGFVT----HCGW-NSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQ 447 (518)
Q Consensus 376 ~~nv~~~~~~pq~~---lL~~~~~~~~It----HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~ 447 (518)
..++.+.+++|+.+ +++.+++ +|. +.|. .++.||+++|+|+|+.... .+...+ +.-..|..+..
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv-~~~~~G~~l~~- 327 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFV-LEGITGYHLAE- 327 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhc-ccCCceEEEeC-
Confidence 46888999998654 5777666 553 2443 5788999999999997653 344455 35456764432
Q ss_pred cccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 010093 448 KWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEELRL 512 (518)
Q Consensus 448 ~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 512 (518)
..+++++.++|.++++ |+.. +++++..++.+.+..+-....+++.+.+.+
T Consensus 328 --------~~d~~~la~~I~~ll~---d~~~----~~~~~~ar~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 328 --------PMTSDSIISDINRTLA---DPEL----TQIAEQAKDFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred --------CCCHHHHHHHHHHHHc---CHHH----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3589999999999997 5553 245555555556667766666777666654
No 119
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.38 E-value=0.015 Score=61.68 Aligned_cols=122 Identities=15% Similarity=0.091 Sum_probs=71.0
Q ss_pred cEEEEecCCcccCCHHHHHHHHHHHHhC----CCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhc--CCCcEeecCccHH
Q 010093 315 SVVYVCFGSLANFTSAQLMEIATGLEAS----GRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRME--GKGLIIRGWAPQV 388 (518)
Q Consensus 315 ~vIyvslGS~~~~~~~~~~~l~~al~~~----~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~nv~~~~~~pq~ 388 (518)
.++|+ |-+. ..+.+..++++++.+ +.-.+..+|.++ .-+.+..... .-++.+.++.++.
T Consensus 548 giLfV--GRLa--~EKGld~LLeAla~L~~~~pnvrLvIVGDGP-----------~reeLe~la~eLgL~V~FLG~~dd~ 612 (794)
T PLN02501 548 GAYFL--GKMV--WAKGYRELIDLLAKHKNELDGFNLDVFGNGE-----------DAHEVQRAAKRLDLNLNFLKGRDHA 612 (794)
T ss_pred ceEEE--Eccc--ccCCHHHHHHHHHHHHhhCCCeEEEEEcCCc-----------cHHHHHHHHHHcCCEEEecCCCCCH
Confidence 35554 3332 466777888887653 122234445444 1112222111 2246666777754
Q ss_pred -HhhccCCCccccc---ccC-chhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHH
Q 010093 389 -LILDHEAVGGFVT---HCG-WNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIE 463 (518)
Q Consensus 389 -~lL~~~~~~~~It---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~ 463 (518)
+++...++ ||. +=| ..++.||+++|+|+|+.-..+... + .. |.+-.+ .-+.+++.
T Consensus 613 ~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V-~~-g~nGll-----------~~D~EafA 672 (794)
T PLN02501 613 DDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----F-RS-FPNCLT-----------YKTSEDFV 672 (794)
T ss_pred HHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----E-ee-cCCeEe-----------cCCHHHHH
Confidence 48877555 664 223 468999999999999987754321 3 12 222222 13689999
Q ss_pred HHHHHHhc
Q 010093 464 KAVNEIMV 471 (518)
Q Consensus 464 ~av~~ll~ 471 (518)
++|.++|.
T Consensus 673 eAI~~LLs 680 (794)
T PLN02501 673 AKVKEALA 680 (794)
T ss_pred HHHHHHHh
Confidence 99999997
No 120
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.34 E-value=0.035 Score=58.09 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=86.9
Q ss_pred cEEEEecCCcccCCHHHHHHHHHHHHhC----CCcEEEEEcCCCCCCCCCCCCCCChhHHHH---H-hcCCCcEeecCcc
Q 010093 315 SVVYVCFGSLANFTSAQLMEIATGLEAS----GRNFIWVVSKNKNDGGEGGNEDWLPEGFEK---R-MEGKGLIIRGWAP 386 (518)
Q Consensus 315 ~vIyvslGS~~~~~~~~~~~l~~al~~~----~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~---~-~~~~nv~~~~~~p 386 (518)
..+++..|.+. +.+.+..++++++.+ +.--++.+|.+. ...+ .-+.+.. + ...+||.+.+...
T Consensus 293 ~~~i~~vGrl~--~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~---~~~~----~~~e~~~li~~l~l~~~V~f~G~~~ 363 (475)
T cd03813 293 PPVVGLIGRVV--PIKDIKTFIRAAAIVRKKIPDAEGWVIGPTD---EDPE----YAEECRELVESLGLEDNVKFTGFQN 363 (475)
T ss_pred CcEEEEEeccc--cccCHHHHHHHHHHHHHhCCCeEEEEECCCC---cChH----HHHHHHHHHHHhCCCCeEEEcCCcc
Confidence 35666677765 344555566665532 222344455432 0000 1111111 1 1257888888666
Q ss_pred HHHhhccCCCcccccc----cCchhHHHHHHhCCceecCCcccccchhHHHHHHhh------hcceeeccccccccccCc
Q 010093 387 QVLILDHEAVGGFVTH----CGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEIL------KIGVGVGIQKWCRIVGDF 456 (518)
Q Consensus 387 q~~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~------G~G~~l~~~~~~~~~~~~ 456 (518)
-.++++.+++ +|.- |-..++.||+++|+|+|+- |.......+ +.. ..|..+..
T Consensus 364 v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv-~~~~~~~~g~~G~lv~~---------- 426 (475)
T cd03813 364 VKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELI-EGADDEALGPAGEVVPP---------- 426 (475)
T ss_pred HHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHh-cCCcccccCCceEEECC----------
Confidence 6778877665 5422 3457999999999999984 444444455 342 26777654
Q ss_pred cChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCC
Q 010093 457 VKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGS 498 (518)
Q Consensus 457 ~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~ 498 (518)
.+++++.+++.++++ ++..+++ +++..++.+++..+
T Consensus 427 ~d~~~la~ai~~ll~---~~~~~~~---~~~~a~~~v~~~~s 462 (475)
T cd03813 427 ADPEALARAILRLLK---DPELRRA---MGEAGRKRVERYYT 462 (475)
T ss_pred CCHHHHHHHHHHHhc---CHHHHHH---HHHHHHHHHHHhCC
Confidence 489999999999997 5554433 33333433344444
No 121
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.25 E-value=0.21 Score=52.24 Aligned_cols=114 Identities=12% Similarity=0.130 Sum_probs=71.7
Q ss_pred CCCcEeecCccH-HHhhccCCCccccc---ccC-chhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeecccccc
Q 010093 376 GKGLIIRGWAPQ-VLILDHEAVGGFVT---HCG-WNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWC 450 (518)
Q Consensus 376 ~~nv~~~~~~pq-~~lL~~~~~~~~It---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~ 450 (518)
.++|++.+|..+ ..+|..+++ ||. +-| .+++.||+++|+|+|+... ..+...+ +.-..|..++..
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV-~dG~nG~LVp~~--- 523 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECF-IEGVSGFILDDA--- 523 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHc-ccCCcEEEECCC---
Confidence 478999998654 457777555 764 345 4699999999999997654 3455666 465678777543
Q ss_pred ccccCccChHHHHHHH---HHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 010093 451 RIVGDFVKRETIEKAV---NEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEELRL 512 (518)
Q Consensus 451 ~~~~~~~~~~~l~~av---~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 512 (518)
+.+.+.+++ .+++. ..+....+++..++.+++..+.+.-+++..+-+++
T Consensus 524 -------D~~aLa~ai~lA~aL~~------ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 524 -------QTVNLDQACRYAEKLVN------LWRSRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred -------ChhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 455555554 23332 11223345566666667777766666666555543
No 122
>PRK14099 glycogen synthase; Provisional
Probab=97.20 E-value=0.39 Score=50.34 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=31.7
Q ss_pred CCCcEEEEEcCC------CccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 33 IPQLHVFFFPFM------AHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 33 ~~~~kIl~~~~~------~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
|+.|||+|++.- +.|=-.-+.+|.++|+++||+|.+++|-+
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 356999988721 34445567889999999999999999954
No 123
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.14 E-value=0.074 Score=48.76 Aligned_cols=49 Identities=27% Similarity=0.262 Sum_probs=34.4
Q ss_pred CCCcEeecCccH----HHhhccCCCcccccccC----chhHHHHHHhCCceecCCcccc
Q 010093 376 GKGLIIRGWAPQ----VLILDHEAVGGFVTHCG----WNSTLEAVAAGVPLVTWPVAAE 426 (518)
Q Consensus 376 ~~nv~~~~~~pq----~~lL~~~~~~~~ItHgG----~~s~~eal~~GvP~l~~P~~~D 426 (518)
.+|+.+.+++++ ..++..+ +++|+-.. .+++.||+.+|+|+|+.+..+.
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~--di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAA--DVFVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcC--CEEEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 458888888632 2234334 44776665 6899999999999999876543
No 124
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.77 E-value=0.016 Score=49.31 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=65.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCccccc
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENLDAI 116 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~~~~ 116 (518)
||+++......| ...+++.|.++||+|++++.....+..... .++.+..++.+ ..
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~--------~~i~~~~~~~~------------~k-- 55 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEII--------EGIKVIRLPSP------------RK-- 55 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHh--------CCeEEEEecCC------------CC--
Confidence 577777665544 568899999999999999996543222211 25666665311 00
Q ss_pred cchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCc---cHHHHHHHcC-CCeEEEec
Q 010093 117 TNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFP---WATDAAAKFG-IPRLVFHG 176 (518)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~---~~~~iA~~lg-iP~v~~~~ 176 (518)
..+..+ . .. .+.+++++.+||+|.+-.... .+..++...+ +|++....
T Consensus 56 ------~~~~~~----~-~~-~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 56 ------SPLNYI----K-YF-RLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred ------ccHHHH----H-HH-HHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 101111 1 12 678889999999998776543 2445667888 89886444
No 125
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.72 E-value=0.0094 Score=59.20 Aligned_cols=111 Identities=18% Similarity=0.299 Sum_probs=74.4
Q ss_pred CCCcEeecCccHHHhhcc-C-CCcccccc-------cCc------hhHHHHHHhCCceecCCcccccchhHHHHHHhhhc
Q 010093 376 GKGLIIRGWAPQVLILDH-E-AVGGFVTH-------CGW------NSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKI 440 (518)
Q Consensus 376 ~~nv~~~~~~pq~~lL~~-~-~~~~~ItH-------gG~------~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~ 440 (518)
.+|+.+.+|+|+.++..+ . +..++... +.. +-+.+++++|+|+|+. ++...+..+ ++.++
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V-~~~~~ 280 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFI-VENGL 280 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHH-HhCCc
Confidence 459999999998776432 1 22221111 111 2277789999999984 456677788 69999
Q ss_pred ceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 010093 441 GVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIE 508 (518)
Q Consensus 441 G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 508 (518)
|..++ +.+++.+++.++.. ++...|++++++++++++ .|.-...++++++.
T Consensus 281 G~~v~------------~~~el~~~l~~~~~-~~~~~m~~n~~~~~~~~~----~g~~~~~~~~~~~~ 331 (333)
T PRK09814 281 GFVVD------------SLEELPEIIDNITE-EEYQEMVENVKKISKLLR----NGYFTKKALVDAIK 331 (333)
T ss_pred eEEeC------------CHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHh
Confidence 99983 44678888888653 334578899999999988 34444444554443
No 126
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.65 E-value=0.0017 Score=51.17 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=46.7
Q ss_pred ChhHHhHhhhcCCCCcEEEEecCCcccC---C--HHHHHHHHHHHHhCCCcEEEEEcCCC
Q 010093 300 DELECLKWLNSKQPYSVVYVCFGSLANF---T--SAQLMEIATGLEASGRNFIWVVSKNK 354 (518)
Q Consensus 300 ~~~~l~~~l~~~~~~~vIyvslGS~~~~---~--~~~~~~l~~al~~~~~~~i~~~~~~~ 354 (518)
.+..+.+|+...+.++.|++|+||.... . ...+..++++++.++..+|..++...
T Consensus 26 G~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~ 85 (97)
T PF06722_consen 26 GPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQ 85 (97)
T ss_dssp SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCC
T ss_pred CCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHH
Confidence 3567888999988999999999998863 2 25788899999999999999998765
No 127
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.54 E-value=0.0063 Score=51.39 Aligned_cols=79 Identities=28% Similarity=0.323 Sum_probs=49.3
Q ss_pred CCCcEeecCccH-HHhhccCCCcccccc--cC-chhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccc
Q 010093 376 GKGLIIRGWAPQ-VLILDHEAVGGFVTH--CG-WNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCR 451 (518)
Q Consensus 376 ~~nv~~~~~~pq-~~lL~~~~~~~~ItH--gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~ 451 (518)
.+|+.+.+|++. .++++.+++.+..+. .| .+++.|++++|+|+|+.+.. ....+ +..|.|..+ .
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~-~~~~~~~~~-~----- 119 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIV-EEDGCGVLV-A----- 119 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE--T-----
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhhe-eecCCeEEE-C-----
Confidence 459999999974 567877777554432 23 48999999999999997761 22233 346777766 2
Q ss_pred cccCccChHHHHHHHHHHhc
Q 010093 452 IVGDFVKRETIEKAVNEIMV 471 (518)
Q Consensus 452 ~~~~~~~~~~l~~av~~ll~ 471 (518)
-+++++.+++.++++
T Consensus 120 -----~~~~~l~~~i~~l~~ 134 (135)
T PF13692_consen 120 -----NDPEELAEAIERLLN 134 (135)
T ss_dssp -----T-HHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHhc
Confidence 389999999999985
No 128
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.35 E-value=0.12 Score=50.89 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=40.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCccchhhh
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATR--GVKASVITTPANAPYVSKS 81 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~ 81 (518)
||+++-....|++.-+.++.++|+++ +.+|++++.+.+.+.++..
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~ 47 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLH 47 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcC
Confidence 68999999999999999999999998 9999999998877766543
No 129
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.21 E-value=1.2 Score=42.50 Aligned_cols=108 Identities=18% Similarity=0.235 Sum_probs=68.4
Q ss_pred CCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCccccccchhhh
Q 010093 43 FMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENLDAITNEVNK 122 (518)
Q Consensus 43 ~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~~~~~~~~~~ 122 (518)
.+..-|+..+..|..+|.++||+|.+-+-+.. . +.+... -.++.+..+- ..+..+
T Consensus 7 I~n~~hvhfFk~lI~elekkG~ev~iT~rd~~-~-v~~LLd-----~ygf~~~~Ig--------k~g~~t---------- 61 (346)
T COG1817 7 IGNPPHVHFFKNLIWELEKKGHEVLITCRDFG-V-VTELLD-----LYGFPYKSIG--------KHGGVT---------- 61 (346)
T ss_pred cCCcchhhHHHHHHHHHHhCCeEEEEEEeecC-c-HHHHHH-----HhCCCeEeec--------ccCCcc----------
Confidence 34456889999999999999999987776432 2 221110 1244444441 111111
Q ss_pred hhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEecch
Q 010093 123 GLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFHGTS 178 (518)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~ 178 (518)
....+..+ ....-.|.+++.+++||+.+. -..+.+..+|..+|+|.+.+.-..
T Consensus 62 -l~~Kl~~~-~eR~~~L~ki~~~~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 62 -LKEKLLES-AERVYKLSKIIAEFKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred -HHHHHHHH-HHHHHHHHHHHhhcCCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 11122222 223346778888999999999 467788999999999999986543
No 130
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.17 E-value=0.075 Score=54.77 Aligned_cols=122 Identities=20% Similarity=0.275 Sum_probs=81.8
Q ss_pred CCcEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHH-----hcCCCcEeecCccH
Q 010093 313 PYSVVYVCFGSLANFTSAQLMEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKR-----MEGKGLIIRGWAPQ 387 (518)
Q Consensus 313 ~~~vIyvslGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~-----~~~~nv~~~~~~pq 387 (518)
+.-+||.+|--....+++.+..-++-++..+..++|.+..+- .++ ..|... ..++.+.+.+-++-
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa----~ge------~rf~ty~~~~Gl~p~riifs~va~k 826 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPA----VGE------QRFRTYAEQLGLEPDRIIFSPVAAK 826 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccc----cch------HHHHHHHHHhCCCccceeeccccch
Confidence 455999999888889999999999999999999999987643 001 133221 13567776555442
Q ss_pred -----HHhhccCCCcccccccCchhHHHHHHhCCceecCCccccc-chhHHHHHHhhhcceeecc
Q 010093 388 -----VLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQ-FYNEKMVNEILKIGVGVGI 446 (518)
Q Consensus 388 -----~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ-~~na~~v~e~~G~G~~l~~ 446 (518)
.-.|..=.++-+.+. |..|.++.|+.|||||.+|.-.-- ..-+..+ -..|+|..+.+
T Consensus 827 ~eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll-~~~Gl~hliak 889 (966)
T KOG4626|consen 827 EEHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLL-TALGLGHLIAK 889 (966)
T ss_pred HHHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHH-HHcccHHHHhh
Confidence 223322223335555 788999999999999999974332 2333345 37888886644
No 131
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.02 E-value=1.3 Score=44.34 Aligned_cols=107 Identities=18% Similarity=0.150 Sum_probs=69.9
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCccchhhhhhhhhccCCCeE-EEEeeCCCccCCCCCCC
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATR--GVKASVITTPANAPYVSKSVERANELGIEMD-VKTIKFPSVEAGLPEGC 110 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~-~~~ip~~~~~~~l~~~~ 110 (518)
.++|||++-....|++.-..++.+.|+++ +.+|++++.+.+.+.++.. +.++ +..++.. .
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~id~vi~~~~~-------~-- 66 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN--------PEINALYGIKNK-------K-- 66 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC--------CCceEEEEeccc-------c--
Confidence 57899999999999999999999999997 8999999998877765543 2232 2333200 0
Q ss_pred CccccccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEE
Q 010093 111 ENLDAITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLV 173 (518)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~ 173 (518)
. .....+. . .-.+...+++.+||++|.-....-...++...|+|..+
T Consensus 67 -~----------~~~~~~~----~-~~~l~~~lr~~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 67 -A----------GASEKIK----N-FFSLIKVLRANKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred -c----------cHHHHHH----H-HHHHHHHHhhCCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 0 0000000 0 11233446678999999654444455677777888755
No 132
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.098 Score=53.71 Aligned_cols=126 Identities=19% Similarity=0.187 Sum_probs=84.7
Q ss_pred CCCcEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHH-hcCCCcEeecCccHHHh
Q 010093 312 QPYSVVYVCFGSLANFTSAQLMEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKR-MEGKGLIIRGWAPQVLI 390 (518)
Q Consensus 312 ~~~~vIyvslGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~nv~~~~~~pq~~l 390 (518)
++..+||+||+-.....++.+..=++-++..+--++|..+++. ++ +....+-+.++.+ .....+++.+-.|..+-
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~---~~-~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h 502 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGD---DA-EINARLRDLAEREGVDSERLRFLPPAPNEDH 502 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCC---cH-HHHHHHHHHHHHcCCChhheeecCCCCCHHH
Confidence 4677999999999999999999999999999999999998854 11 2111111111111 13567778777775443
Q ss_pred ---hccCCCcccc---cccCchhHHHHHHhCCceecCCcccccc--hhHHHHHHhhhcceeec
Q 010093 391 ---LDHEAVGGFV---THCGWNSTLEAVAAGVPLVTWPVAAEQF--YNEKMVNEILKIGVGVG 445 (518)
Q Consensus 391 ---L~~~~~~~~I---tHgG~~s~~eal~~GvP~l~~P~~~DQ~--~na~~v~e~~G~G~~l~ 445 (518)
+..+++ |+ --||..|+.|+|..|||||..+ ++|+ .|+.-++..+|+-..+.
T Consensus 503 ~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA 561 (620)
T COG3914 503 RARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVA 561 (620)
T ss_pred HHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhc
Confidence 333443 54 4799999999999999999876 5665 23333334555554443
No 133
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.92 E-value=0.021 Score=49.30 Aligned_cols=95 Identities=21% Similarity=0.278 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCccccccchhhhhhHHHHHH
Q 010093 51 PIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENLDAITNEVNKGLIVKFFG 130 (518)
Q Consensus 51 p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 130 (518)
-+..|+++|.++||+|+++++......-+.. ..++.+..+|.+... ..... . ..
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-------~~~~~---~---~~------ 59 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEE-------EDGVRVHRLPLPRRP-------WPLRL---L---RF------ 59 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEE-------ETTEEEEEE--S-SS-------SGGGH---C---CH------
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccc-------cCCceEEeccCCccc-------hhhhh---H---HH------
Confidence 4678999999999999999986654422111 125667777643211 01110 0 11
Q ss_pred HHHhhHHHHHHHH--hhCCCCEEEecCCCc-cHHHHHH-HcCCCeEEEec
Q 010093 131 ATMKLQEPLEQLL--QEHKPDCLVADTFFP-WATDAAA-KFGIPRLVFHG 176 (518)
Q Consensus 131 ~~~~~~~~l~~ll--~~~~pDlVI~D~~~~-~~~~iA~-~lgiP~v~~~~ 176 (518)
...+.+++ +..+||+|.+..... ....++. ..++|+|....
T Consensus 60 -----~~~~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 60 -----LRRLRRLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp -----HHHHHHHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred -----HHHHHHHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 12334444 678999999887433 3334444 88999988544
No 134
>PHA01633 putative glycosyl transferase group 1
Probab=95.91 E-value=0.14 Score=50.45 Aligned_cols=84 Identities=12% Similarity=0.038 Sum_probs=53.5
Q ss_pred CCCcEee---cCccHH---HhhccCCCcccccc---cC-chhHHHHHHhCCceecCCc------cccc------chhHHH
Q 010093 376 GKGLIIR---GWAPQV---LILDHEAVGGFVTH---CG-WNSTLEAVAAGVPLVTWPV------AAEQ------FYNEKM 433 (518)
Q Consensus 376 ~~nv~~~---~~~pq~---~lL~~~~~~~~ItH---gG-~~s~~eal~~GvP~l~~P~------~~DQ------~~na~~ 433 (518)
++++.+. +++++. .+++.+++ ||.- -| ..++.||+++|+|+|.--. .+|+ .+++..
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 4588887 455644 56666555 6642 34 4589999999999998532 3333 334433
Q ss_pred HHH-hhhcceeeccccccccccCccChHHHHHHHHHHhc
Q 010093 434 VNE-ILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMV 471 (518)
Q Consensus 434 v~e-~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~ 471 (518)
.+. ..|.|..++ ..+++++.+++.+++.
T Consensus 278 ~~~~~~g~g~~~~----------~~d~~~la~ai~~~~~ 306 (335)
T PHA01633 278 YYDKEHGQKWKIH----------KFQIEDMANAIILAFE 306 (335)
T ss_pred hcCcccCceeeec----------CCCHHHHHHHHHHHHh
Confidence 321 234444442 5799999999999965
No 135
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=94.65 E-value=2.8 Score=41.73 Aligned_cols=105 Identities=12% Similarity=0.098 Sum_probs=68.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCccchhhhhhhhhccCCCeE-EEEeeCCCccCCCCCCCCcc
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATR--GVKASVITTPANAPYVSKSVERANELGIEMD-VKTIKFPSVEAGLPEGCENL 113 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~-~~~ip~~~~~~~l~~~~~~~ 113 (518)
|||++-....|++.-+.++.+.|+++ +.+|++++.+.+.+.++.. +.|+ +..++.. . .
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~vd~vi~~~~~---------~--~ 61 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN--------PDINALYGLDRK---------K--A 61 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC--------CCccEEEEeChh---------h--h
Confidence 68999999999999999999999997 8999999998877665543 2232 3333200 0 0
Q ss_pred ccccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEE
Q 010093 114 DAITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLV 173 (518)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~ 173 (518)
. ..+..+. ... .+...+++.++|++|.-........++...|+|.-+
T Consensus 62 ~--------~~~~~~~----~~~-~l~~~lr~~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 62 K--------AGERKLA----NQF-HLIKVLRANRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred c--------chHHHHH----HHH-HHHHHHHhCCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 0 0000011 111 223446668999999665555677788888999765
No 136
>PRK14098 glycogen synthase; Provisional
Probab=94.56 E-value=0.76 Score=48.20 Aligned_cols=164 Identities=12% Similarity=0.034 Sum_probs=88.3
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHhC---CCcEEEEEcCCCCCCCCCCCCCCChhHHHHH--hcCCCcEeecCccHH--
Q 010093 316 VVYVCFGSLANFTSAQLMEIATGLEAS---GRNFIWVVSKNKNDGGEGGNEDWLPEGFEKR--MEGKGLIIRGWAPQV-- 388 (518)
Q Consensus 316 vIyvslGS~~~~~~~~~~~l~~al~~~---~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~--~~~~nv~~~~~~pq~-- 388 (518)
.++...|.+.. .+.+..+++++..+ +.++++. |.+. . . .-+.+... ..+.++.+...++..
T Consensus 308 ~~i~~vgRl~~--~KG~d~li~a~~~l~~~~~~lviv-G~G~----~-~----~~~~l~~l~~~~~~~V~~~g~~~~~~~ 375 (489)
T PRK14098 308 PLVGVIINFDD--FQGAELLAESLEKLVELDIQLVIC-GSGD----K-E----YEKRFQDFAEEHPEQVSVQTEFTDAFF 375 (489)
T ss_pred CEEEEeccccc--cCcHHHHHHHHHHHHhcCcEEEEE-eCCC----H-H----HHHHHHHHHHHCCCCEEEEEecCHHHH
Confidence 45566666553 34455555555543 4555444 3322 0 0 11222221 125688888888764
Q ss_pred -HhhccCCCcccccc---cCc-hhHHHHHHhCCceecCCccc--ccchhHHHHHHhhhcceeeccccccccccCccChHH
Q 010093 389 -LILDHEAVGGFVTH---CGW-NSTLEAVAAGVPLVTWPVAA--EQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRET 461 (518)
Q Consensus 389 -~lL~~~~~~~~ItH---gG~-~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~ 461 (518)
.+++.+++ |+.- -|+ .+.+||+++|+|.|+....+ |...+ .. +.-+.|..+.. .++++
T Consensus 376 ~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~-~~~~~G~l~~~----------~d~~~ 440 (489)
T PRK14098 376 HLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VS-EDKGSGFIFHD----------YTPEA 440 (489)
T ss_pred HHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CC-CCCCceeEeCC----------CCHHH
Confidence 57766555 6532 232 37789999999888766432 22211 11 12356777643 57999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 010093 462 IEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEELRL 512 (518)
Q Consensus 462 l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 512 (518)
|.++|.+++.-..++ +..+++ .+.++++.-|-+..+++.++..++
T Consensus 441 la~ai~~~l~~~~~~---~~~~~~---~~~~~~~~fsw~~~a~~y~~lY~~ 485 (489)
T PRK14098 441 LVAKLGEALALYHDE---ERWEEL---VLEAMERDFSWKNSAEEYAQLYRE 485 (489)
T ss_pred HHHHHHHHHHHHcCH---HHHHHH---HHHHhcCCCChHHHHHHHHHHHHH
Confidence 999999987300011 222222 233345667766666666654443
No 137
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=94.26 E-value=1.7 Score=44.52 Aligned_cols=100 Identities=12% Similarity=0.161 Sum_probs=69.2
Q ss_pred HHhhccCCCcccccccCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhccee-eccccccccccCccChHHHHHHH
Q 010093 388 VLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVG-VGIQKWCRIVGDFVKRETIEKAV 466 (518)
Q Consensus 388 ~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~-l~~~~~~~~~~~~~~~~~l~~av 466 (518)
..++.+ |+++|.. =+-++.-|+..|||.+++++ | +-...-+ +.+|.... .+.. +++.++|.+.+
T Consensus 322 ~~iIs~--~dl~ig~-RlHa~I~a~~~gvP~i~i~Y--~-~K~~~~~-~~lg~~~~~~~~~--------~l~~~~Li~~v 386 (426)
T PRK10017 322 GKILGA--CELTVGT-RLHSAIISMNFGTPAIAINY--E-HKSAGIM-QQLGLPEMAIDIR--------HLLDGSLQAMV 386 (426)
T ss_pred HHHHhh--CCEEEEe-cchHHHHHHHcCCCEEEeee--h-HHHHHHH-HHcCCccEEechh--------hCCHHHHHHHH
Confidence 367766 5558764 34578889999999999998 3 3344455 57888766 5555 78999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 010093 467 NEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEEL 510 (518)
Q Consensus 467 ~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 510 (518)
.+++++ .+.+++..++-.+.++ ++ +.....++++.+
T Consensus 387 ~~~~~~--r~~~~~~l~~~v~~~r---~~---~~~~~~~~~~~~ 422 (426)
T PRK10017 387 ADTLGQ--LPALNARLAEAVSRER---QT---GMQMVQSVLERI 422 (426)
T ss_pred HHHHhC--HHHHHHHHHHHHHHHH---HH---HHHHHHHHHHHh
Confidence 999973 2477777766666666 22 334455555544
No 138
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=94.19 E-value=0.64 Score=40.85 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=32.2
Q ss_pred hHHHHHHHHh-hCCCCEEEecCCCccHHHHHHHc-CCCeEEEecc
Q 010093 135 LQEPLEQLLQ-EHKPDCLVADTFFPWATDAAAKF-GIPRLVFHGT 177 (518)
Q Consensus 135 ~~~~l~~ll~-~~~pDlVI~D~~~~~~~~iA~~l-giP~v~~~~~ 177 (518)
....+.++.+ .+.||+||+..-.-.++-+-..+ ++|.+.++-.
T Consensus 53 v~~a~~~L~~~Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 53 VARAARQLRAQGFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFEF 97 (171)
T ss_pred HHHHHHHHHHcCCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEEE
Confidence 3445555544 48899999997766888889999 9999886543
No 139
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=94.01 E-value=0.17 Score=45.77 Aligned_cols=119 Identities=18% Similarity=0.228 Sum_probs=65.7
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCC--Ccc
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGC--ENL 113 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~--~~~ 113 (518)
||||+..--+. +---+..|+++|.+.||+|+++.|...+.-...... ....+++.....+ ....+. ...
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit----~~~pl~~~~~~~~----~~~~~~~~~~v 71 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSIT----LHKPLRVTEVEPG----HDPGGVEAYAV 71 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS------SSSEEEEEEEE-T----TCCSTTEEEEE
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceeec----CCCCeEEEEEEec----ccCCCCCEEEE
Confidence 68888886665 556688999999888999999999877665433211 1223444333200 001111 111
Q ss_pred ccccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecC----------CCc---cHHHHHHHcCCCeEEEecc
Q 010093 114 DAITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADT----------FFP---WATDAAAKFGIPRLVFHGT 177 (518)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~----------~~~---~~~~iA~~lgiP~v~~~~~ 177 (518)
+..+ . +...-.+..++...+||+||+.. ++. .+..-|...|||.|.++..
T Consensus 72 ~GTP-------a-------Dcv~~al~~~~~~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~ 134 (196)
T PF01975_consen 72 SGTP-------A-------DCVKLALDGLLPDKKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLD 134 (196)
T ss_dssp SS-H-------H-------HHHHHHHHCTSTTSS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEE
T ss_pred cCcH-------H-------HHHHHHHHhhhccCCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecc
Confidence 1111 1 11222444555556799999752 111 3466677889999998775
No 140
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=93.53 E-value=0.63 Score=36.15 Aligned_cols=83 Identities=14% Similarity=0.133 Sum_probs=52.9
Q ss_pred ccCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHH
Q 010093 402 HCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSR 481 (518)
Q Consensus 402 HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~ 481 (518)
+|-..-+.|++++|+|+|.-+. ...... ..-|...-.- . +.+++.+++.++++ ++..+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~----~~~~~~~~~~--------~-~~~el~~~i~~ll~---~~~~~-- 66 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREI----FEDGEHIITY--------N-DPEELAEKIEYLLE---NPEER-- 66 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHH----cCCCCeEEEE--------C-CHHHHHHHHHHHHC---CHHHH--
Confidence 4556689999999999998765 222222 2223222222 2 89999999999998 54433
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHH
Q 010093 482 AKALGKMAKRAVENGGSSYSDLSALI 507 (518)
Q Consensus 482 a~~l~~~~~~~~~~~g~~~~~~~~~~ 507 (518)
+++++..++-+.+..+....+++++
T Consensus 67 -~~ia~~a~~~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 67 -RRIAKNARERVLKRHTWEHRAEQIL 91 (92)
T ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3444444444566777666666655
No 141
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=93.02 E-value=10 Score=37.56 Aligned_cols=104 Identities=16% Similarity=0.213 Sum_probs=70.2
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCccchhhhhhhhhccCCCeE-EEEeeCCCccCCCCCCCC
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATR--GVKASVITTPANAPYVSKSVERANELGIEMD-VKTIKFPSVEAGLPEGCE 111 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~-~~~ip~~~~~~~l~~~~~ 111 (518)
||||+++-....|++.-.+++-+.|+++ +.++++++.+.+.+.++.. +.|+ +..+. . .
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~--------p~I~~vi~~~---------~--~ 61 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN--------PEIDKVIIID---------K--K 61 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC--------hHhhhhcccc---------c--c
Confidence 5799999999999999999999999998 5999999998877766543 1121 11110 0 0
Q ss_pred ccccccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEE
Q 010093 112 NLDAITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLV 173 (518)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~ 173 (518)
. .. ....-...+.+.++..++|+||.=.-..=...++...++|.-.
T Consensus 62 ~----------~~------~~~~~~~~l~~~lr~~~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 62 K----------KG------LGLKERLALLRTLRKERYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred c----------cc------cchHHHHHHHHHhhccCCCEEEECcccHHHHHHHHHhCCCccc
Confidence 0 00 0001122455566777999999876666566677788888655
No 142
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=92.14 E-value=0.32 Score=42.52 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=23.6
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 45 AHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 45 ~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
..|--.-+..|+++|.++||+|+++++..
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~ 39 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGV 39 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 55666778999999999999999998864
No 143
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=91.85 E-value=1 Score=46.64 Aligned_cols=108 Identities=14% Similarity=0.020 Sum_probs=68.3
Q ss_pred ecCccHHHh---hccCCCccccc---ccCc-hhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeecccccccccc
Q 010093 382 RGWAPQVLI---LDHEAVGGFVT---HCGW-NSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVG 454 (518)
Q Consensus 382 ~~~~pq~~l---L~~~~~~~~It---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~ 454 (518)
...+++.++ +..+++ |+. +-|+ .++.||+++|+|.-++-+..+--..+..+ +-|+.+++
T Consensus 341 ~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l----~~gllVnP-------- 406 (456)
T TIGR02400 341 NRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQEL----NGALLVNP-------- 406 (456)
T ss_pred cCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCChHHh----CCcEEECC--------
Confidence 345666554 555555 654 4465 58889999999922222222322333333 34777765
Q ss_pred CccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 010093 455 DFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEELR 511 (518)
Q Consensus 455 ~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 511 (518)
.+++++.++|.++|+ .+.++-+++.+++.+.+. .-+...-.+++++.+.
T Consensus 407 --~d~~~lA~aI~~aL~-~~~~er~~r~~~~~~~v~-----~~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 --YDIDGMADAIARALT-MPLEEREERHRAMMDKLR-----KNDVQRWREDFLSDLN 455 (456)
T ss_pred --CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhh
Confidence 489999999999996 334566677777777665 2566666777777664
No 144
>PLN02939 transferase, transferring glycosyl groups
Probab=91.81 E-value=1.6 Score=48.62 Aligned_cols=116 Identities=9% Similarity=0.082 Sum_probs=65.3
Q ss_pred CCCcEeecCccHH---HhhccCCCcccccc---cC-chhHHHHHHhCCceecCCccc--ccchh--HHHHHHhhhcceee
Q 010093 376 GKGLIIRGWAPQV---LILDHEAVGGFVTH---CG-WNSTLEAVAAGVPLVTWPVAA--EQFYN--EKMVNEILKIGVGV 444 (518)
Q Consensus 376 ~~nv~~~~~~pq~---~lL~~~~~~~~ItH---gG-~~s~~eal~~GvP~l~~P~~~--DQ~~n--a~~v~e~~G~G~~l 444 (518)
.++|.+..+.+.. .+++.+++ ||.- =| ..+.+||+++|+|.|+....+ |-..+ ...+.+.-+-|..+
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 4678888888764 47766555 7642 22 358999999999998765433 32211 11110123557666
Q ss_pred ccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 010093 445 GIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIE 508 (518)
Q Consensus 445 ~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 508 (518)
.. .+++.|..+|.+++. .|..+.....++.+.++....+-...+++..+
T Consensus 914 ~~----------~D~eaLa~AL~rAL~-----~~~~dpe~~~~L~~~am~~dFSWe~~A~qYee 962 (977)
T PLN02939 914 LT----------PDEQGLNSALERAFN-----YYKRKPEVWKQLVQKDMNIDFSWDSSASQYEE 962 (977)
T ss_pred cC----------CCHHHHHHHHHHHHH-----HhccCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 43 488899999998874 12111111112222333556666655555544
No 145
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=91.46 E-value=16 Score=36.15 Aligned_cols=102 Identities=15% Similarity=0.108 Sum_probs=66.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCccchhhhhhhhhccCCCeE-EEEeeCCCccCCCCCCCCcc
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATR--GVKASVITTPANAPYVSKSVERANELGIEMD-VKTIKFPSVEAGLPEGCENL 113 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~-~~~ip~~~~~~~l~~~~~~~ 113 (518)
||||+-....|++.-..++.++|++. +.+|++++.+.+.+.++.. +.++ +..++ ... ..
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~id~v~~~~---------~~~-~~ 62 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM--------PEIRQAIDMP---------LGH-GA 62 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC--------chhceeeecC---------Ccc-cc
Confidence 68999999999999999999999997 8999999998766655543 1221 22221 000 00
Q ss_pred ccccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEE
Q 010093 114 DAITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLV 173 (518)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~ 173 (518)
..+. ....+.+.+++.++|++|.-....-...++...|+|.-.
T Consensus 63 ---------~~~~--------~~~~~~~~lr~~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 63 ---------LELT--------ERRRLGRSLREERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred ---------hhhh--------HHHHHHHHHhhcCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 0000 011333456677999999876555566677777888653
No 146
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=91.29 E-value=1.8 Score=41.23 Aligned_cols=131 Identities=15% Similarity=0.157 Sum_probs=77.7
Q ss_pred HhhhhccCCCCCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCC
Q 010093 22 YLIRKLNMGSEIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPS 101 (518)
Q Consensus 22 ~~~~~~~m~~~~~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~ 101 (518)
++....++.- +...|.+.=.|+.|--.-.-.|.++|.++||.|-++..++.....-... .|++++...+..
T Consensus 40 ll~~l~p~tG--~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsi-----LGDRiRM~~~~~-- 110 (323)
T COG1703 40 LLRALYPRTG--NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSI-----LGDRIRMQRLAV-- 110 (323)
T ss_pred HHHHHhhcCC--CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccc-----cccHhhHHhhcc--
Confidence 3444555554 3346779999999999999999999999999999998876544322110 132333322210
Q ss_pred ccCCCCCCCCccccccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCc--cHHHHHHHcCCCeEEE
Q 010093 102 VEAGLPEGCENLDAITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFP--WATDAAAKFGIPRLVF 174 (518)
Q Consensus 102 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~--~~~~iA~~lgiP~v~~ 174 (518)
-+. ......+.. .....+... ..+...+++..++|+||++.... .-..++....+=.+.+
T Consensus 111 ----~~~--vFiRs~~sr---G~lGGlS~a----t~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~ 172 (323)
T COG1703 111 ----DPG--VFIRSSPSR---GTLGGLSRA----TREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVM 172 (323)
T ss_pred ----CCC--eEEeecCCC---ccchhhhHH----HHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEe
Confidence 000 011122222 222222222 23556677888999999997554 4567777777665553
No 147
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=90.94 E-value=15 Score=35.12 Aligned_cols=45 Identities=13% Similarity=0.256 Sum_probs=39.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEeCCCCccchhhh
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATRG--VKASVITTPANAPYVSKS 81 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~rG--H~Vt~~~~~~~~~~~~~~ 81 (518)
|||++-..+.|++.-+.++.++|+++. -+|++++.+.+.+.++..
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~ 47 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM 47 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC
Confidence 689999999999999999999999974 899999998877665543
No 148
>PHA01630 putative group 1 glycosyl transferase
Probab=90.66 E-value=3.4 Score=40.91 Aligned_cols=111 Identities=13% Similarity=0.032 Sum_probs=58.8
Q ss_pred cCccHHH---hhccCCCcccc--cc-cC-chhHHHHHHhCCceecCCccc--ccchh---HHHHHHh-----------hh
Q 010093 383 GWAPQVL---ILDHEAVGGFV--TH-CG-WNSTLEAVAAGVPLVTWPVAA--EQFYN---EKMVNEI-----------LK 439 (518)
Q Consensus 383 ~~~pq~~---lL~~~~~~~~I--tH-gG-~~s~~eal~~GvP~l~~P~~~--DQ~~n---a~~v~e~-----------~G 439 (518)
.++|+.+ ++..+++ |+ +. .| ..++.||+++|+|+|+.-..+ |...+ ..-+ +. .+
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv-~~~~~~~~~~~~~~~ 272 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWI-KSGRKPKLWYTNPIH 272 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEe-eecccccccccCCcc
Confidence 3466544 5766555 54 23 33 468999999999999976432 32211 1111 00 12
Q ss_pred cceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 010093 440 IGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEELR 511 (518)
Q Consensus 440 ~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 511 (518)
+|..+ ..+.+++.+++.++|.+.+++.++++...-+... .+..+-....+++.+-++
T Consensus 273 ~G~~v-----------~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~----~~~fs~~~ia~k~~~l~~ 329 (331)
T PHA01630 273 VGYFL-----------DPDIEDAYQKLLEALANWTPEKKKENLEGRAILY----RENYSYNAIAKMWEKILE 329 (331)
T ss_pred ccccc-----------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH----HHhCCHHHHHHHHHHHHh
Confidence 34443 2366778888888886211134444433332222 345665555555555443
No 149
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=89.84 E-value=6 Score=34.85 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=27.6
Q ss_pred HHhhCCCCEEEecCCCc--cHHHHHHHc------CCCeEEEecc
Q 010093 142 LLQEHKPDCLVADTFFP--WATDAAAKF------GIPRLVFHGT 177 (518)
Q Consensus 142 ll~~~~pDlVI~D~~~~--~~~~iA~~l------giP~v~~~~~ 177 (518)
++.+.+||+||+..... ....+|..+ |.+.|.+-+.
T Consensus 87 il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 87 ILRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred HHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 34567899999997555 467788888 9999987553
No 150
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=88.31 E-value=6.1 Score=44.11 Aligned_cols=104 Identities=18% Similarity=0.049 Sum_probs=69.3
Q ss_pred HhhccCCCccccc---ccCch-hHHHHHHhCCceecCCcccccchhHHHHHHhhh-cceeeccccccccccCccChHHHH
Q 010093 389 LILDHEAVGGFVT---HCGWN-STLEAVAAGVPLVTWPVAAEQFYNEKMVNEILK-IGVGVGIQKWCRIVGDFVKRETIE 463 (518)
Q Consensus 389 ~lL~~~~~~~~It---HgG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G-~G~~l~~~~~~~~~~~~~~~~~l~ 463 (518)
.++..+++ |+. .-|+| +..|++++|.|.=++++..+.-..+. .+| -|+.+++ .+.+++.
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~----~l~~~allVnP----------~D~~~lA 434 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQ----SLGAGALLVNP----------WNITEVS 434 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCcCchh----hhcCCeEEECC----------CCHHHHH
Confidence 46656665 553 44765 77899999999444444444444343 234 4777765 4899999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhh
Q 010093 464 KAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEELRLSR 514 (518)
Q Consensus 464 ~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 514 (518)
++|.++|+ .+.++-+++.+++.+.++ .-+...-.+.+++.+....
T Consensus 435 ~AI~~aL~-m~~~er~~r~~~~~~~v~-----~~~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 435 SAIKEALN-MSDEERETRHRHNFQYVK-----THSAQKWADDFMSELNDII 479 (797)
T ss_pred HHHHHHHh-CCHHHHHHHHHHHHHhhh-----hCCHHHHHHHHHHHHHHHh
Confidence 99999996 334466666776776666 3456666788888877554
No 151
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=88.28 E-value=5.1 Score=37.75 Aligned_cols=43 Identities=12% Similarity=0.046 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYV 78 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 78 (518)
++||||+..--+.- ---+..|+++|.+.| +|+++.|...++-.
T Consensus 4 ~~M~ILltNDDGi~-a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~ 46 (257)
T PRK13932 4 KKPHILVCNDDGIE-GEGIHVLAASMKKIG-RVTVVAPAEPHSGM 46 (257)
T ss_pred CCCEEEEECCCCCC-CHHHHHHHHHHHhCC-CEEEEcCCCCCCCC
Confidence 45799988855432 245788899998888 79999998665543
No 152
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=87.60 E-value=4.9 Score=37.58 Aligned_cols=113 Identities=19% Similarity=0.278 Sum_probs=63.8
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCcccc
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENLDA 115 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~~~ 115 (518)
||||+..--+ =|---+..|+++|. .+++|+++.|...++-....... -.+++...+. ........
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl----~~Plr~~~~~---------~~~~av~G 65 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-EGADVTVVAPDREQSGASHSLTL----HEPLRVRQVD---------NGAYAVNG 65 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-hCCCEEEEccCCCCccccccccc----ccCceeeEec---------cceEEecC
Confidence 4666665443 24444778888888 99999999998766544322110 0012222221 11111111
Q ss_pred ccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecC----------CCc---cHHHHHHHcCCCeEEEecc
Q 010093 116 ITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADT----------FFP---WATDAAAKFGIPRLVFHGT 177 (518)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~----------~~~---~~~~iA~~lgiP~v~~~~~ 177 (518)
. -.+...-.+..++++.+||+||+.. .+. .+..=|..+|||.|.++..
T Consensus 66 T--------------PaDCV~lal~~l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 66 T--------------PADCVILGLNELLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred C--------------hHHHHHHHHHHhccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 1 1122234667777778899999753 112 3455567789999988765
No 153
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=87.52 E-value=3.1 Score=43.92 Aligned_cols=73 Identities=15% Similarity=0.218 Sum_probs=53.0
Q ss_pred CCcEeecCcc--H-HHhhccCCCccccccc---CchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeecccccc
Q 010093 377 KGLIIRGWAP--Q-VLILDHEAVGGFVTHC---GWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWC 450 (518)
Q Consensus 377 ~nv~~~~~~p--q-~~lL~~~~~~~~ItHg---G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~ 450 (518)
..|.+.++.. + ..++.+ .+++|.=+ |.++.+||+.+|+|+| .......| +...-|..+ .
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~--arl~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li--~--- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDK--LRLIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYII--D--- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhh--heEEEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEe--C---
Confidence 5778888877 3 446766 44477655 6789999999999999 33344455 355556665 2
Q ss_pred ccccCccChHHHHHHHHHHhc
Q 010093 451 RIVGDFVKRETIEKAVNEIMV 471 (518)
Q Consensus 451 ~~~~~~~~~~~l~~av~~ll~ 471 (518)
+..+|.+++..+|.
T Consensus 474 -------d~~~l~~al~~~L~ 487 (519)
T TIGR03713 474 -------DISELLKALDYYLD 487 (519)
T ss_pred -------CHHHHHHHHHHHHh
Confidence 67889999999997
No 154
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=84.41 E-value=5.5 Score=34.45 Aligned_cols=39 Identities=18% Similarity=0.317 Sum_probs=34.2
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
+|||++.-.|+-|-..-.+.|++.|.++|+.|-=+.++.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~E 43 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPE 43 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeee
Confidence 579999999999999999999999999999998444443
No 155
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=84.05 E-value=7 Score=38.94 Aligned_cols=103 Identities=16% Similarity=0.102 Sum_probs=69.0
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCccchhhhhhhhhccCCCeE-EEEeeCCCccCCCCCCCCc
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATR--GVKASVITTPANAPYVSKSVERANELGIEMD-VKTIKFPSVEAGLPEGCEN 112 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~-~~~ip~~~~~~~l~~~~~~ 112 (518)
|||+++-..+.|++.-..++.+.|+++ +.+|++++.+.+.+.++.. +.++ +..++ .. ..
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~vd~vi~~~---------~~-~~ 62 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM--------PEVNEAIPMP---------LG-HG 62 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC--------CccCEEEecc---------cc-cc
Confidence 589999999999999999999999996 8999999998877766543 1232 22221 00 00
Q ss_pred cccccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEE
Q 010093 113 LDAITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLV 173 (518)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~ 173 (518)
. ..+.. ...+...+++.+||++|.=....-...++...|+|.-.
T Consensus 63 ~---------~~~~~--------~~~l~~~lr~~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 63 A---------LEIGE--------RRRLGHSLREKRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred h---------hhhHH--------HHHHHHHHHhcCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0 00000 11233456778999999765555566777888888655
No 156
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=83.67 E-value=3.7 Score=42.76 Aligned_cols=104 Identities=17% Similarity=0.135 Sum_probs=59.6
Q ss_pred eecCccHHH---hhccCCCccccc---ccCc-hhHHHHHHhCCc----eecCCcccccchhHHHHHHhhhcceeeccccc
Q 010093 381 IRGWAPQVL---ILDHEAVGGFVT---HCGW-NSTLEAVAAGVP----LVTWPVAAEQFYNEKMVNEILKIGVGVGIQKW 449 (518)
Q Consensus 381 ~~~~~pq~~---lL~~~~~~~~It---HgG~-~s~~eal~~GvP----~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~ 449 (518)
+.+++++.+ ++..+++ ||. +-|+ .++.||+++|+| +|+--.. ..+ +...-|..+++
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~----G~~----~~~~~g~lv~p--- 411 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFA----GAA----EELSGALLVNP--- 411 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccc----cch----hhcCCCEEECC---
Confidence 446777655 4666555 552 3454 478999999999 4433221 111 11233666654
Q ss_pred cccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 010093 450 CRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEEL 510 (518)
Q Consensus 450 ~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 510 (518)
.+.+++.++|.++|+ ++.+..+.+.++..+.++ .-+...-+++++.++
T Consensus 412 -------~d~~~la~ai~~~l~-~~~~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 412 -------YDIDEVADAIHRALT-MPLEERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred -------CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 489999999999997 222233333333333333 355555556665544
No 157
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=83.37 E-value=1.7 Score=35.69 Aligned_cols=39 Identities=8% Similarity=-0.087 Sum_probs=27.5
Q ss_pred cEEEEEcCCCcc---ChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 010093 36 LHVFFFPFMAHG---HMIPIVDMAKLFATRGVKASVITTPAN 74 (518)
Q Consensus 36 ~kIl~~~~~~~G---H~~p~l~LA~~L~~rGH~Vt~~~~~~~ 74 (518)
|||+|+.-|-.+ .-.-..+++.+..+|||+|.++...+.
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 688888877533 345688999999999999999988754
No 158
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=83.11 E-value=12 Score=35.19 Aligned_cols=40 Identities=8% Similarity=0.071 Sum_probs=28.2
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccc
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPY 77 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~ 77 (518)
||||+.---+. |---+..|+++|.+ +|+|+++.|...+.-
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg 40 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSA 40 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCcc
Confidence 47887774443 22238888999975 689999999876553
No 159
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=82.95 E-value=20 Score=35.17 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=35.4
Q ss_pred CcEEEEEc-CCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccc
Q 010093 35 QLHVFFFP-FMAHGHMIPIVDMAKLFATRGVKASVITTPANAPY 77 (518)
Q Consensus 35 ~~kIl~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~ 77 (518)
++||+|+. -|+-|-..-..++|-.|++.|..|.+++++..++.
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL 44 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSL 44 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCch
Confidence 46888776 56889988899999999999998888888776653
No 160
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=82.46 E-value=3 Score=35.30 Aligned_cols=47 Identities=9% Similarity=0.016 Sum_probs=40.6
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchh
Q 010093 33 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVS 79 (518)
Q Consensus 33 ~~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 79 (518)
||+.||++.+.++-+|-.-..-++..|..+|++|+++...--.+.+.
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~ 47 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFI 47 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHH
Confidence 46789999999999999999999999999999999998865444443
No 161
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=82.37 E-value=37 Score=35.00 Aligned_cols=135 Identities=7% Similarity=0.011 Sum_probs=81.7
Q ss_pred CCcEEEEecCCcccCCHHHHHHHHHHHHhCCC-cEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEee-cCcc-H-H
Q 010093 313 PYSVVYVCFGSLANFTSAQLMEIATGLEASGR-NFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIR-GWAP-Q-V 388 (518)
Q Consensus 313 ~~~vIyvslGS~~~~~~~~~~~l~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~-~~~p-q-~ 388 (518)
.+.++++| +.+.+..+....+.+|. ++=...+.. + .+.+.....-+|++.. ++.+ + .
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te--------~----s~kL~~L~~y~nvvly~~~~~~~l~ 342 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE--------M----SSKLMSLDKYDNVKLYPNITTQKIQ 342 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc--------c----cHHHHHHHhcCCcEEECCcChHHHH
Confidence 34477776 36666667777776654 443333222 1 1122111112566654 5566 3 6
Q ss_pred HhhccCCCcccccccC--chhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHH
Q 010093 389 LILDHEAVGGFVTHCG--WNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAV 466 (518)
Q Consensus 389 ~lL~~~~~~~~ItHgG--~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av 466 (518)
+++..+++-+-|+||+ ..++.||+.+|+|+++.=...- +...+ .. |-.+. .-+.+++.++|
T Consensus 343 ~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~---~~~~i-~~---g~l~~----------~~~~~~m~~~i 405 (438)
T TIGR02919 343 ELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAH---NRDFI-AS---ENIFE----------HNEVDQLISKL 405 (438)
T ss_pred HHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccC---Ccccc-cC---Cceec----------CCCHHHHHHHH
Confidence 7999999999999977 4799999999999998654321 11223 12 44443 34789999999
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 010093 467 NEIMVGDRAEEMRSRAKALG 486 (518)
Q Consensus 467 ~~ll~~~~~~~~~~~a~~l~ 486 (518)
.++|. +++--+.+...+
T Consensus 406 ~~lL~---d~~~~~~~~~~q 422 (438)
T TIGR02919 406 KDLLN---DPNQFRELLEQQ 422 (438)
T ss_pred HHHhc---CHHHHHHHHHHH
Confidence 99998 554333333333
No 162
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=81.53 E-value=9.8 Score=36.03 Aligned_cols=37 Identities=35% Similarity=0.450 Sum_probs=27.9
Q ss_pred HHHHHHhhCCCCEEEecCCCcc------HHHHHHHcCCCeEEE
Q 010093 138 PLEQLLQEHKPDCLVADTFFPW------ATDAAAKFGIPRLVF 174 (518)
Q Consensus 138 ~l~~ll~~~~pDlVI~D~~~~~------~~~iA~~lgiP~v~~ 174 (518)
.+.++++..++|+||--.+-++ +..++..+|||++.+
T Consensus 56 ~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 56 ELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 4667788889998875444332 578899999999985
No 163
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=80.64 E-value=7.4 Score=38.27 Aligned_cols=44 Identities=11% Similarity=0.123 Sum_probs=39.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCccchh
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATR--GVKASVITTPANAPYVS 79 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~ 79 (518)
|||+++-....|++.-..++.+.|++. +.+||+++.+.+.+.++
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~ 46 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPS 46 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHh
Confidence 589999999999999999999999997 99999999987666544
No 164
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=78.74 E-value=29 Score=32.72 Aligned_cols=41 Identities=10% Similarity=0.085 Sum_probs=30.0
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYV 78 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 78 (518)
||||+.---+. |---+..|+++|.+. |+|+++.|...+.-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~ 41 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGA 41 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCC
Confidence 47777775443 334478899999998 799999998765544
No 165
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=78.42 E-value=2 Score=35.95 Aligned_cols=45 Identities=11% Similarity=0.173 Sum_probs=36.3
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhh
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKS 81 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 81 (518)
+||++...++.+-+. ...+.++|.++|++|.++.++.....+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 588888888866666 999999999999999999998776666554
No 166
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=77.63 E-value=22 Score=33.54 Aligned_cols=41 Identities=7% Similarity=0.032 Sum_probs=28.7
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYV 78 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 78 (518)
||||+..--+. |---+..|+++|.+ +|+|+++.|...+.-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg~ 41 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSAT 41 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCccc
Confidence 47777775544 23447788888865 6899999998765543
No 167
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=77.61 E-value=67 Score=30.62 Aligned_cols=79 Identities=25% Similarity=0.327 Sum_probs=50.5
Q ss_pred CCCcEeecCcc---HHHhhccCCCcccccc---cCch-hHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeecccc
Q 010093 376 GKGLIIRGWAP---QVLILDHEAVGGFVTH---CGWN-STLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQK 448 (518)
Q Consensus 376 ~~nv~~~~~~p---q~~lL~~~~~~~~ItH---gG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~ 448 (518)
.+++.+.+++| ...++..+++ ++.- .|.| ++.||+++|+|++.... ......+ ...+.|. +...
T Consensus 256 ~~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~-~~~~~g~-~~~~- 326 (381)
T COG0438 256 EDNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVV-EDGETGL-LVPP- 326 (381)
T ss_pred CCcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCC----CChHHHh-cCCCceE-ecCC-
Confidence 46888889988 2335655444 5544 3554 46999999999965543 3333344 2332466 4332
Q ss_pred ccccccCccChHHHHHHHHHHhc
Q 010093 449 WCRIVGDFVKRETIEKAVNEIMV 471 (518)
Q Consensus 449 ~~~~~~~~~~~~~l~~av~~ll~ 471 (518)
.+.+++..++..+++
T Consensus 327 --------~~~~~~~~~i~~~~~ 341 (381)
T COG0438 327 --------GDVEELADALEQLLE 341 (381)
T ss_pred --------CCHHHHHHHHHHHhc
Confidence 268999999999997
No 168
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=76.63 E-value=6.2 Score=43.73 Aligned_cols=113 Identities=18% Similarity=0.040 Sum_probs=72.2
Q ss_pred cEeecCccHHH---hhccCCCcccccc---cCc-hhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccc
Q 010093 379 LIIRGWAPQVL---ILDHEAVGGFVTH---CGW-NSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCR 451 (518)
Q Consensus 379 v~~~~~~pq~~---lL~~~~~~~~ItH---gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~ 451 (518)
+++.+++++.+ ++..+++ |+.- -|+ .++.||+++|+|-.++|...+--.-+..+ .-|+.+++
T Consensus 344 ~~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l----~~~llv~P----- 412 (726)
T PRK14501 344 HYFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL----AEALLVNP----- 412 (726)
T ss_pred EEEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHh----CcCeEECC-----
Confidence 34557788765 5555555 5542 354 58899999988755555555543333333 23777765
Q ss_pred cccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhh
Q 010093 452 IVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEELRLS 513 (518)
Q Consensus 452 ~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 513 (518)
.+++++.++|.++|+ .+.++.+++.+++.+.++ .-+...-++++++.+...
T Consensus 413 -----~d~~~la~ai~~~l~-~~~~e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 413 -----NDIEGIAAAIKRALE-MPEEEQRERMQAMQERLR-----RYDVHKWASDFLDELREA 463 (726)
T ss_pred -----CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHH
Confidence 479999999999996 333344555554444443 356777788888888765
No 169
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=75.85 E-value=25 Score=32.97 Aligned_cols=42 Identities=10% Similarity=0.111 Sum_probs=30.0
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchh
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVS 79 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 79 (518)
||||+.---+. |---+..|+++|.+.| +|+++.|...+.-+.
T Consensus 1 M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g 42 (244)
T TIGR00087 1 MKILLTNDDGI-HSPGIRALYQALKELG-EVTVVAPARQRSGTG 42 (244)
T ss_pred CeEEEECCCCC-CCHhHHHHHHHHHhCC-CEEEEeCCCCccccc
Confidence 47776664442 2344788999999988 899999987665543
No 170
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=75.18 E-value=52 Score=31.27 Aligned_cols=41 Identities=7% Similarity=0.077 Sum_probs=29.6
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYV 78 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 78 (518)
||||+..--+. |---+..|+++|.+.| +|+++.|...++-.
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg~ 41 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSAT 41 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCccc
Confidence 47777775543 3355888999998887 79999997655543
No 171
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.01 E-value=14 Score=35.45 Aligned_cols=65 Identities=15% Similarity=0.256 Sum_probs=43.6
Q ss_pred hhHH-HHHHhCCceecCCcccccc--hhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHH
Q 010093 406 NSTL-EAVAAGVPLVTWPVAAEQF--YNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRA 482 (518)
Q Consensus 406 ~s~~-eal~~GvP~l~~P~~~DQ~--~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a 482 (518)
||.. +++-.|+|+|.+|-.+-|+ ..|.|=.+-+|..+.+-.. .++.-..+..++|. |+.+..++
T Consensus 320 GTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~----------~aq~a~~~~q~ll~---dp~r~~ai 386 (412)
T COG4370 320 GTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP----------EAQAAAQAVQELLG---DPQRLTAI 386 (412)
T ss_pred cchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC----------chhhHHHHHHHHhc---ChHHHHHH
Confidence 3443 4578899999999999994 4565553446777777432 44444555566897 66777766
Q ss_pred H
Q 010093 483 K 483 (518)
Q Consensus 483 ~ 483 (518)
+
T Consensus 387 r 387 (412)
T COG4370 387 R 387 (412)
T ss_pred H
Confidence 6
No 172
>PRK14098 glycogen synthase; Provisional
Probab=74.82 E-value=4.9 Score=42.21 Aligned_cols=40 Identities=8% Similarity=0.139 Sum_probs=31.7
Q ss_pred CCcEEEEEcCC------CccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 34 PQLHVFFFPFM------AHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 34 ~~~kIl~~~~~------~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
+||||+|++.- +.|=-.-+.+|.++|+++||+|.+++|-.
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 78999988721 34445567889999999999999999954
No 173
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=74.11 E-value=27 Score=31.71 Aligned_cols=35 Identities=3% Similarity=0.020 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEeCC
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRG--VKASVITTP 72 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rG--H~Vt~~~~~ 72 (518)
||||+|+..+..+- +.+|.+.+.+.+ ++|.++.+.
T Consensus 1 m~ki~vl~sg~gs~---~~~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 1 MKRIVVLASGNGSN---LQAIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred CceEEEEEcCCChh---HHHHHHHHHcCCCCcEEEEEEec
Confidence 57999888876333 446667777654 778776544
No 174
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=73.72 E-value=16 Score=33.36 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=33.4
Q ss_pred CcEEEEEcCC--CccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 35 QLHVFFFPFM--AHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 35 ~~kIl~~~~~--~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
|.+|.+++.+ +-|-..-...|+-+|+.+|+.|.++-..-
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~Di 41 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDI 41 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCc
Confidence 4577777765 88999999999999999999999997764
No 175
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=72.63 E-value=11 Score=35.46 Aligned_cols=133 Identities=14% Similarity=0.122 Sum_probs=70.8
Q ss_pred HhhhhccCCCCCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCC
Q 010093 22 YLIRKLNMGSEIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPS 101 (518)
Q Consensus 22 ~~~~~~~m~~~~~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~ 101 (518)
+|....+-.- +...|.|.=.|+.|--.-.-.|++.|.++||.|-+++.++-.+.--.. -.|++++...+..
T Consensus 18 ll~~l~~~~g--~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGA-----lLGDRiRM~~~~~-- 88 (266)
T PF03308_consen 18 LLKRLYPHTG--RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGA-----LLGDRIRMQELSR-- 88 (266)
T ss_dssp HHHHHGGGTT---SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC--------SS--GGGCHHHHT--
T ss_pred HHHHHHhhcC--CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCc-----ccccHHHhcCcCC--
Confidence 3333444432 445677988999999999999999999999999999876543321111 0122232222110
Q ss_pred ccCCCCCCCCccccccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCc--cHHHHHHHcCCCeEEEec
Q 010093 102 VEAGLPEGCENLDAITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFP--WATDAAAKFGIPRLVFHG 176 (518)
Q Consensus 102 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~--~~~~iA~~lgiP~v~~~~ 176 (518)
...........+ .....+.. ...+...+++..+||+||++.... .-..++...+.-++.+.+
T Consensus 89 ------d~~vfIRS~atR---G~lGGls~----~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~P 152 (266)
T PF03308_consen 89 ------DPGVFIRSMATR---GSLGGLSR----ATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVP 152 (266)
T ss_dssp ------STTEEEEEE------SSHHHHHH----HHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEES
T ss_pred ------CCCEEEeecCcC---CCCCCccH----hHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecC
Confidence 000011111111 22222222 233566678888999999997554 567777777776666544
No 176
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=72.55 E-value=30 Score=30.22 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=21.7
Q ss_pred CcccccccCch------hHHHHHHhCCceecCC
Q 010093 396 VGGFVTHCGWN------STLEAVAAGVPLVTWP 422 (518)
Q Consensus 396 ~~~~ItHgG~~------s~~eal~~GvP~l~~P 422 (518)
..++++|+|-| .+.+|...++|||++.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 44488887754 7889999999999985
No 177
>PRK05973 replicative DNA helicase; Provisional
Probab=72.09 E-value=14 Score=34.42 Aligned_cols=44 Identities=16% Similarity=0.087 Sum_probs=37.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhh
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSK 80 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~ 80 (518)
=+++.--|+.|=....+.++...+++|+.|.|++.+...+.+..
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~ 109 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRD 109 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHH
Confidence 46777788999999999999999999999999999877655543
No 178
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=71.74 E-value=44 Score=29.68 Aligned_cols=42 Identities=19% Similarity=0.206 Sum_probs=26.9
Q ss_pred HHHHHHHHhhCCCCEEEecCCCc-cHHHHHHHcCCCeEEEecc
Q 010093 136 QEPLEQLLQEHKPDCLVADTFFP-WATDAAAKFGIPRLVFHGT 177 (518)
Q Consensus 136 ~~~l~~ll~~~~pDlVI~D~~~~-~~~~iA~~lgiP~v~~~~~ 177 (518)
.+++.+.+++.+||++|+-.+.. ....+-......++-++++
T Consensus 68 ~~~~~~~l~~~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 68 DEELLELLESLNPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp HHHHHHHHHHTT-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred hhHHHHHHHhhccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 45677788889999999876654 4445556666666766654
No 179
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=71.53 E-value=6.1 Score=32.34 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=33.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
||++.+.++-.|.....-++..|..+|++|.+.....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~ 37 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDV 37 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCC
Confidence 5889999999999999999999999999998877543
No 180
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=71.50 E-value=10 Score=33.22 Aligned_cols=43 Identities=23% Similarity=0.379 Sum_probs=28.2
Q ss_pred hhHHHHHHHHhhCCCCEEEecCCCccHH--H-H-HHH-c-CCCeEEEec
Q 010093 134 KLQEPLEQLLQEHKPDCLVADTFFPWAT--D-A-AAK-F-GIPRLVFHG 176 (518)
Q Consensus 134 ~~~~~l~~ll~~~~pDlVI~D~~~~~~~--~-i-A~~-l-giP~v~~~~ 176 (518)
...+.+.+++++.+||+||+.+.+.... . + .+. + ++|++.+.+
T Consensus 76 ~~~~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 76 LFARRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 3456788899999999999998765333 1 1 122 3 477665433
No 181
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=71.48 E-value=6.4 Score=35.48 Aligned_cols=43 Identities=9% Similarity=0.003 Sum_probs=34.1
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCcc
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAP 76 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 76 (518)
+..||++.-.|+.|=+.-...+++.|.++||+|.++.++...+
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~ 46 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQT 46 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHH
Confidence 4568888888875555547999999999999999999976543
No 182
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=69.99 E-value=16 Score=32.69 Aligned_cols=100 Identities=15% Similarity=0.193 Sum_probs=51.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCccc-hhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCcc
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATR--GVKASVITTPANAPY-VSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENL 113 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~-~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~ 113 (518)
+++.+-..+.|-++-..+|+++|.++ |+.|.+-++...... ..+.. +..+....+|+ +
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~------~~~v~~~~~P~---------D---- 82 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLL------PDRVDVQYLPL---------D---- 82 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-------GGG-SEEE------------S----
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhC------CCCeEEEEeCc---------c----
Confidence 45555566889999999999999997 888877776443222 22110 11122222221 0
Q ss_pred ccccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCc--cHHHHHHHcCCCeEEEec
Q 010093 114 DAITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFP--WATDAAAKFGIPRLVFHG 176 (518)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~--~~~~iA~~lgiP~v~~~~ 176 (518)
....++++++.++||++|.-.... .....|++.|||++.+.-
T Consensus 83 ---------------------~~~~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 83 ---------------------FPWAVRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp ---------------------SHHHHHHHHHHH--SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred ---------------------CHHHHHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 112566778888999998654444 467778888999998754
No 183
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=69.74 E-value=14 Score=34.88 Aligned_cols=38 Identities=34% Similarity=0.461 Sum_probs=28.2
Q ss_pred HHHHHHHhhCCCCEEEecCCCc------cHHHHHHHcCCCeEEE
Q 010093 137 EPLEQLLQEHKPDCLVADTFFP------WATDAAAKFGIPRLVF 174 (518)
Q Consensus 137 ~~l~~ll~~~~pDlVI~D~~~~------~~~~iA~~lgiP~v~~ 174 (518)
+.+.++++..++|+||=-.+-+ -+..+|..+|||++.+
T Consensus 56 ~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 56 EGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred HHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEE
Confidence 3677788888999998322222 2578899999999986
No 184
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=69.47 E-value=26 Score=30.55 Aligned_cols=28 Identities=32% Similarity=0.353 Sum_probs=21.0
Q ss_pred CcccccccCch------hHHHHHHhCCceecCCc
Q 010093 396 VGGFVTHCGWN------STLEAVAAGVPLVTWPV 423 (518)
Q Consensus 396 ~~~~ItHgG~~------s~~eal~~GvP~l~~P~ 423 (518)
..++++|.|-| .+.+|...++|+|++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 34467776644 67889999999999853
No 185
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=69.30 E-value=5.5 Score=35.20 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=24.1
Q ss_pred cEEEEEc-CCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 36 LHVFFFP-FMAHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 36 ~kIl~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
|||.++. .+-.| ..|++++..|||+||-++-..
T Consensus 1 mKIaiIgAsG~~G-----s~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 1 MKIAIIGASGKAG-----SRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred CeEEEEecCchhH-----HHHHHHHHhCCCeeEEEEeCh
Confidence 5776543 33333 468999999999999998754
No 186
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=68.73 E-value=5.3 Score=35.64 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=36.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchh
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVS 79 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 79 (518)
|.||++...++.|=+. ...+.+.|.++|++|.++.++.....+.
T Consensus 1 ~k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 1 MKNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred CCEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 4588888888766655 8999999999999999999987766554
No 187
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=68.46 E-value=9.4 Score=28.72 Aligned_cols=34 Identities=15% Similarity=0.069 Sum_probs=30.2
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVI 69 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~ 69 (518)
.-++++.++...|...+..+|+.|.++|+.|...
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4588888998999999999999999999998654
No 188
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=68.04 E-value=36 Score=32.06 Aligned_cols=91 Identities=19% Similarity=0.182 Sum_probs=56.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCccc
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENLD 114 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~~ 114 (518)
|++|+++...+-| ..||+.|.++|+.|++.+...... .... ++.... ..+.
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~~~~---------~~~v~~--------------G~l~ 52 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-PADL---------PGPVRV--------------GGFG 52 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-cccC---------CceEEE--------------CCCC
Confidence 4578888766655 578999999999888766544322 1000 111100 0010
Q ss_pred cccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCc------cHHHHHHHcCCCeEEE
Q 010093 115 AITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFP------WATDAAAKFGIPRLVF 174 (518)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~------~~~~iA~~lgiP~v~~ 174 (518)
-.+.+.+++++.++++||=-.+-+ -+..+|..+|||++.+
T Consensus 53 --------------------~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 53 --------------------GAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRL 98 (248)
T ss_pred --------------------CHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEE
Confidence 123677788889999988322222 2578899999999986
No 189
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=65.10 E-value=30 Score=31.63 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=27.6
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 010093 45 AHGHMIPIVDMAKLFATRGVKASVITTPAN 74 (518)
Q Consensus 45 ~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 74 (518)
+.|--.-..+++-.+...||.|++++++.-
T Consensus 38 ~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T 67 (235)
T COG2874 38 GTGKSVLSQRFAYGFLMNGYRVTYVSTELT 67 (235)
T ss_pred CccHHHHHHHHHHHHHhCCceEEEEEechh
Confidence 778899999999999999999999999864
No 190
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=64.83 E-value=1.5e+02 Score=29.30 Aligned_cols=127 Identities=10% Similarity=-0.015 Sum_probs=76.4
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCcc
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENL 113 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~ 113 (518)
++.|+.++.-|-.||--.|.-=|..|++.|.+|.+++.-...+.-+-. ...+++++.++-+.....
T Consensus 11 ~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~------~hprI~ih~m~~l~~~~~-------- 76 (444)
T KOG2941|consen 11 KKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELL------NHPRIRIHGMPNLPFLQG-------- 76 (444)
T ss_pred ccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHh------cCCceEEEeCCCCcccCC--------
Confidence 467899999999999999999999999999999999876543322211 134788988873321111
Q ss_pred ccccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecC-CCccHHHHH----HHcCCCeEEEecchHHH
Q 010093 114 DAITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADT-FFPWATDAA----AKFGIPRLVFHGTSFFS 181 (518)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~-~~~~~~~iA----~~lgiP~v~~~~~~~~~ 181 (518)
.+ ..+............-+..++...++|.+++-. -......++ ...|..+++=|+...++
T Consensus 77 --~p-----~~~~l~lKvf~Qfl~Ll~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 77 --GP-----RVLFLPLKVFWQFLSLLWALFVLRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred --Cc-----hhhhhHHHHHHHHHHHHHHHHhccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 11 011111112222222344444467889888764 333444444 44477777766654444
No 191
>PRK12342 hypothetical protein; Provisional
Probab=64.61 E-value=12 Score=35.23 Aligned_cols=40 Identities=10% Similarity=-0.042 Sum_probs=29.1
Q ss_pred HHHHHHhhCCCCEEEecCCCc------cHHHHHHHcCCCeEEEecc
Q 010093 138 PLEQLLQEHKPDCLVADTFFP------WATDAAAKFGIPRLVFHGT 177 (518)
Q Consensus 138 ~l~~ll~~~~pDlVI~D~~~~------~~~~iA~~lgiP~v~~~~~ 177 (518)
.|...+++.+||+|++..-+. .+..+|+.+|+|++.....
T Consensus 100 ~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 100 ALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 334444555799999865443 3899999999999986554
No 192
>PRK06849 hypothetical protein; Provisional
Probab=64.05 E-value=40 Score=34.13 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
.+++||+.-.. ..-.+.+|+.|.++||+|.++....
T Consensus 3 ~~~~VLI~G~~----~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGAR----APAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCC----cHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 36788887432 2358999999999999999997754
No 193
>PRK06321 replicative DNA helicase; Provisional
Probab=63.73 E-value=57 Score=34.02 Aligned_cols=42 Identities=10% Similarity=0.142 Sum_probs=34.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCCCCccch
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFA-TRGVKASVITTPANAPYV 78 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~-~rGH~Vt~~~~~~~~~~~ 78 (518)
=|++..-|+.|-....+.||...+ +.|..|.|++-+.....+
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQL 270 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 366778889999999999999987 459999999988655443
No 194
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=63.54 E-value=7.4 Score=34.77 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=36.0
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCCCCccchh
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFAT-RGVKASVITTPANAPYVS 79 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~~~ 79 (518)
|+||++...|+-| .+-...++++|.+ .||+|.++.++.....+.
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~ 45 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLA 45 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHH
Confidence 4589888888766 6668999999999 599999999987666554
No 195
>PRK05595 replicative DNA helicase; Provisional
Probab=63.21 E-value=40 Score=34.86 Aligned_cols=42 Identities=10% Similarity=0.146 Sum_probs=34.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCCCCccch
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFA-TRGVKASVITTPANAPYV 78 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~-~rGH~Vt~~~~~~~~~~~ 78 (518)
=+++..-|+.|-....+.+|..++ +.|+.|.|++.+.....+
T Consensus 203 liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l 245 (444)
T PRK05595 203 MILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQL 245 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHH
Confidence 356777889999999999998876 569999999998655443
No 196
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=62.65 E-value=7.6 Score=34.75 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=25.9
Q ss_pred cEEEEEcCCCccChHH------------HHHHHHHHHhCCCeEEEEeCCC
Q 010093 36 LHVFFFPFMAHGHMIP------------IVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p------------~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
.||++...|+.-.+.| -..||+++..|||+||++..+.
T Consensus 4 k~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 4 KKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp -EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 4666666666555443 5789999999999999999973
No 197
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=62.27 E-value=86 Score=31.58 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=33.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 010093 38 VFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYV 78 (518)
Q Consensus 38 Il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 78 (518)
+++.--|+.|-..-++.+|..++.+|..|.+++.+...+.+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQI 125 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHH
Confidence 45566679999999999999999999999999887654443
No 198
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=61.92 E-value=36 Score=33.29 Aligned_cols=56 Identities=20% Similarity=0.101 Sum_probs=37.8
Q ss_pred cHHHhhccCCCcccccccCchhHHHHHHhCCceecCCcccccch----hHHHHHHhhhcceee
Q 010093 386 PQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFY----NEKMVNEILKIGVGV 444 (518)
Q Consensus 386 pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~----na~~v~e~~G~G~~l 444 (518)
|+..+|+.++. .+||---.+-+.||+..|+|+.++|.-. +.. -...+ ++.|+-..+
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L-~~~g~~r~~ 280 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSL-EERGAVRPF 280 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHH-HHCCCEEEC
Confidence 56678877665 3555555688999999999999999866 322 23345 355555444
No 199
>PRK05920 aromatic acid decarboxylase; Validated
Probab=61.67 E-value=9.6 Score=34.64 Aligned_cols=44 Identities=11% Similarity=0.079 Sum_probs=35.5
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchh
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVS 79 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 79 (518)
++||++.-.++.+- .=...+.+.|.+.||+|.++.++.....+.
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~ 46 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVLA 46 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHHH
Confidence 46888887776554 688999999999999999999987665554
No 200
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=61.53 E-value=90 Score=29.64 Aligned_cols=42 Identities=2% Similarity=-0.063 Sum_probs=25.8
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhC---CCeEEEEeCCCCccch
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATR---GVKASVITTPANAPYV 78 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~r---GH~Vt~~~~~~~~~~~ 78 (518)
||||+.---+. |---+..|+++|.+. |++|+++.|...++-.
T Consensus 1 M~ILlTNDDGI-~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ 45 (261)
T PRK13931 1 MRILITNDDGI-NAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGV 45 (261)
T ss_pred CeEEEEcCCCC-CCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCC
Confidence 36666653321 223356677777663 4799999998765543
No 201
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=60.99 E-value=16 Score=29.78 Aligned_cols=37 Identities=11% Similarity=0.186 Sum_probs=33.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
|+++.+.+..-|-.-+..|+..|.++||+|.++-...
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~ 38 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANV 38 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCC
Confidence 7899999999999999999999999999999885543
No 202
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=60.90 E-value=17 Score=35.70 Aligned_cols=42 Identities=21% Similarity=0.385 Sum_probs=31.8
Q ss_pred HhhHHHHHHHHhhCCCCEEEecCCCccH----------HHHHHHcCCCeEEE
Q 010093 133 MKLQEPLEQLLQEHKPDCLVADTFFPWA----------TDAAAKFGIPRLVF 174 (518)
Q Consensus 133 ~~~~~~l~~ll~~~~pDlVI~D~~~~~~----------~~iA~~lgiP~v~~ 174 (518)
+...+.+.+++++.+||++|+.+.+..+ ..+.++++||.+.-
T Consensus 66 eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 66 EEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 3455677888889999999999866532 23667899999874
No 203
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=60.78 E-value=61 Score=33.20 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=26.4
Q ss_pred HHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEec
Q 010093 141 QLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFHG 176 (518)
Q Consensus 141 ~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~ 176 (518)
+.+++.+||++|.. ..+..+|+++|||.+.+..
T Consensus 344 ~~~~~~~pDl~Ig~---s~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 344 AAVEEYRPDLAIGT---TPLVQYAKEKGIPALYYTN 376 (416)
T ss_pred HHHhhcCCCEEEeC---ChhhHHHHHhCCCEEEecC
Confidence 44567899999988 3467799999999988654
No 204
>PRK08760 replicative DNA helicase; Provisional
Probab=60.66 E-value=32 Score=35.94 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=34.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCCCCccch
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFAT-RGVKASVITTPANAPYV 78 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~~ 78 (518)
=|++..-|+.|-....+.+|...+. .|+.|.|++-+.....+
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql 273 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQL 273 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHH
Confidence 3667788899999999999998875 59999999988655433
No 205
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=59.83 E-value=66 Score=31.73 Aligned_cols=83 Identities=12% Similarity=0.047 Sum_probs=59.0
Q ss_pred CCCcEe-ecCcc---HHHhhccCCCcccccc--cCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccc
Q 010093 376 GKGLII-RGWAP---QVLILDHEAVGGFVTH--CGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKW 449 (518)
Q Consensus 376 ~~nv~~-~~~~p---q~~lL~~~~~~~~ItH--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~ 449 (518)
.+|+.+ ..++| +..+|..+++..|+|. =|.|++.-.|+.|+|+++- .+..--.-+ ++.|+=+-...+
T Consensus 244 ~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~----~~np~~~~l-~~~~ipVlf~~d-- 316 (360)
T PF07429_consen 244 AENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS----RDNPFWQDL-KEQGIPVLFYGD-- 316 (360)
T ss_pred ccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe----cCChHHHHH-HhCCCeEEeccc--
Confidence 457765 56887 5668888888766664 5899999999999999863 222233345 355666655444
Q ss_pred cccccCccChHHHHHHHHHHhc
Q 010093 450 CRIVGDFVKRETIEKAVNEIMV 471 (518)
Q Consensus 450 ~~~~~~~~~~~~l~~av~~ll~ 471 (518)
.++.+.|++|=+++..
T Consensus 317 ------~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 317 ------ELDEALVREAQRQLAN 332 (360)
T ss_pred ------cCCHHHHHHHHHHHhh
Confidence 8999999999888775
No 206
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=59.82 E-value=65 Score=31.27 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=55.2
Q ss_pred CCCcEe-ecCcc---HHHhhccCCCcccccc--cCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccc
Q 010093 376 GKGLII-RGWAP---QVLILDHEAVGGFVTH--CGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKW 449 (518)
Q Consensus 376 ~~nv~~-~~~~p---q~~lL~~~~~~~~ItH--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~ 449 (518)
++|+.+ ..++| +..+|..+++..|+|+ =|.|++.-.++.|+|+++-- +=+.+.. +. +.|+-+-.+.+
T Consensus 205 ~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqd-l~-e~gv~Vlf~~d-- 277 (322)
T PRK02797 205 AENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQD-LT-EQGLPVLFTGD-- 277 (322)
T ss_pred cccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHH-HH-hCCCeEEecCC--
Confidence 357665 46666 5779999888877775 47899999999999999742 1122222 32 45666654544
Q ss_pred cccccCccChHHHHHHHHHHh
Q 010093 450 CRIVGDFVKRETIEKAVNEIM 470 (518)
Q Consensus 450 ~~~~~~~~~~~~l~~av~~ll 470 (518)
.++...+.++=+++.
T Consensus 278 ------~L~~~~v~e~~rql~ 292 (322)
T PRK02797 278 ------DLDEDIVREAQRQLA 292 (322)
T ss_pred ------cccHHHHHHHHHHHH
Confidence 788887777655443
No 207
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=59.55 E-value=48 Score=31.31 Aligned_cols=43 Identities=23% Similarity=0.196 Sum_probs=34.3
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhh
Q 010093 38 VFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKS 81 (518)
Q Consensus 38 Il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 81 (518)
|+|..-|+.|.......+|..++++|+.|.++..+.. +.+...
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~-~sl~~~ 45 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA-HSLSDS 45 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc-ccHHHH
Confidence 3455577999999999999999999999999988764 344433
No 208
>PLN02470 acetolactate synthase
Probab=59.35 E-value=28 Score=37.51 Aligned_cols=92 Identities=15% Similarity=0.099 Sum_probs=53.2
Q ss_pred ecCCcccC--CHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecC--------ccHHH
Q 010093 320 CFGSLANF--TSAQLMEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGW--------APQVL 389 (518)
Q Consensus 320 slGS~~~~--~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~--------~pq~~ 389 (518)
+|||.... ....-+.|++.|++.|.+.|+-+++..+ +| -+....+.+++.++.- +-...
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~----------~~-l~dal~~~~~i~~i~~rhE~~A~~~Adgy 70 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGAS----------ME-IHQALTRSNCIRNVLCRHEQGEVFAAEGY 70 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCccc----------HH-HHHHHhccCCceEEEeccHHHHHHHHHHH
Confidence 46665542 2233566888888899988888877651 22 1111111223433211 11111
Q ss_pred hhccCCCcccccccCch------hHHHHHHhCCceecCC
Q 010093 390 ILDHEAVGGFVTHCGWN------STLEAVAAGVPLVTWP 422 (518)
Q Consensus 390 lL~~~~~~~~ItHgG~~------s~~eal~~GvP~l~~P 422 (518)
-..+....++++|.|-| .+.+|...++|||++.
T Consensus 71 ar~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 71 AKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 12223455688888854 7889999999999985
No 209
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=59.08 E-value=44 Score=31.08 Aligned_cols=42 Identities=10% Similarity=0.099 Sum_probs=34.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeCCCCccchh
Q 010093 38 VFFFPFMAHGHMIPIVDMAKLFATR-GVKASVITTPANAPYVS 79 (518)
Q Consensus 38 Il~~~~~~~GH~~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~~~ 79 (518)
+++...|+.|=...++.++..++.+ |+.|.|++.+.....+.
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~ 58 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLL 58 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHH
Confidence 4566677899999999999998887 99999999987655443
No 210
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=58.00 E-value=1.4e+02 Score=26.69 Aligned_cols=57 Identities=12% Similarity=0.134 Sum_probs=33.9
Q ss_pred cEEEEEc---CC-CccChH-HHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeC
Q 010093 36 LHVFFFP---FM-AHGHMI-PIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKF 99 (518)
Q Consensus 36 ~kIl~~~---~~-~~GH~~-p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~ 99 (518)
.||.++- .| .+|=+- ..-.|+..|+++||+||+.+.....+.-... ..+++...+|.
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~-------y~gv~l~~i~~ 63 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFE-------YNGVRLVYIPA 63 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcc-------cCCeEEEEeCC
Confidence 4666554 22 234333 3456778888899999999887655322221 12466767653
No 211
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=57.43 E-value=38 Score=34.82 Aligned_cols=34 Identities=12% Similarity=0.127 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
++||||++=.+++-| +|+.+|++-++-+.+++.+
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~p 36 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFP 36 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEEC
Confidence 478999998888766 7899999988665555544
No 212
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=57.41 E-value=64 Score=26.51 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=15.8
Q ss_pred hhHHHHHHHHhhCCCCEEEec
Q 010093 134 KLQEPLEQLLQEHKPDCLVAD 154 (518)
Q Consensus 134 ~~~~~l~~ll~~~~pDlVI~D 154 (518)
.+.+.+.+++++.+||+|++-
T Consensus 87 ~~~~~l~~~i~~~~p~~V~t~ 107 (128)
T PF02585_consen 87 ELVRDLEDLIREFRPDVVFTP 107 (128)
T ss_dssp HHHHHHHHHHHHH-ESEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEC
Confidence 455678888888999999865
No 213
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=57.03 E-value=38 Score=36.02 Aligned_cols=79 Identities=13% Similarity=0.059 Sum_probs=46.1
Q ss_pred cHHHhhccCCCccccc---ccCc-hhHHHHHHhCCceecCCccc-ccchhHHHHHHhh-hcceeeccccccccccCccCh
Q 010093 386 PQVLILDHEAVGGFVT---HCGW-NSTLEAVAAGVPLVTWPVAA-EQFYNEKMVNEIL-KIGVGVGIQKWCRIVGDFVKR 459 (518)
Q Consensus 386 pq~~lL~~~~~~~~It---HgG~-~s~~eal~~GvP~l~~P~~~-DQ~~na~~v~e~~-G~G~~l~~~~~~~~~~~~~~~ 459 (518)
+..+++..+++ +|. +=|+ -++.||+++|+|+|+....+ ... +..+...- ..|+.+.... ..+-..+.
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~--v~E~v~~~~~~gi~V~~r~---~~~~~e~v 539 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCF--MEEHIEDPESYGIYIVDRR---FKSPDESV 539 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhh--hHHHhccCCCceEEEecCC---ccchHHHH
Confidence 35566655444 554 3454 59999999999999987632 222 22221111 2577775320 00113467
Q ss_pred HHHHHHHHHHhc
Q 010093 460 ETIEKAVNEIMV 471 (518)
Q Consensus 460 ~~l~~av~~ll~ 471 (518)
++|.+++.+++.
T Consensus 540 ~~La~~m~~~~~ 551 (590)
T cd03793 540 QQLTQYMYEFCQ 551 (590)
T ss_pred HHHHHHHHHHhC
Confidence 788888888885
No 214
>PRK08506 replicative DNA helicase; Provisional
Probab=56.88 E-value=72 Score=33.32 Aligned_cols=42 Identities=10% Similarity=0.024 Sum_probs=35.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYV 78 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 78 (518)
=|++...|+.|-....+.+|...+..|+.|.|++.+.....+
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql 235 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQL 235 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHH
Confidence 466778889999999999999998899999999998655444
No 215
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=56.39 E-value=64 Score=31.93 Aligned_cols=146 Identities=18% Similarity=0.249 Sum_probs=77.8
Q ss_pred hHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEe
Q 010093 302 LECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLII 381 (518)
Q Consensus 302 ~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~ 381 (518)
.+-.+.-...++|.|||++-|--.. .+-.-..+.+|.++-...|-....... .|..
T Consensus 119 ldAl~iA~~nP~k~vVF~avGFETT-aP~~A~~i~~A~~~~~~Nfsvl~~hkl-----------~PPa------------ 174 (364)
T PRK15062 119 LDALKIARENPDKEVVFFAIGFETT-APATAATLLQAKAEGLKNFSVLSSHKL-----------VPPA------------ 174 (364)
T ss_pred HHHHHHHHHCCCCeEEEEecCchhc-cHHHHHHHHHHHHcCCCCEEEEEeccc-----------cHHH------------
Confidence 4444555666778899999887654 344444455555543334333322211 2221
Q ss_pred ecCccHHHhhccCC--CcccccccCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccCh
Q 010093 382 RGWAPQVLILDHEA--VGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKR 459 (518)
Q Consensus 382 ~~~~pq~~lL~~~~--~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~ 459 (518)
...||..++ +++||.-|=..++. +-..+ .-.. ++.|+-..+. .|.+
T Consensus 175 -----~~~ll~~~~~~idgfi~PGHVstI~---------------G~~~y-~~l~-~~y~~P~VVa----------GFEp 222 (364)
T PRK15062 175 -----MRALLEDPELRIDGFIAPGHVSTII---------------GTEPY-EFLA-EEYGIPVVVA----------GFEP 222 (364)
T ss_pred -----HHHHHcCCCCCccEEEecCEeEEEe---------------ccchh-HHHH-HHcCCCeEEe----------ccCH
Confidence 455665553 66677664332221 11111 1122 4566666663 4677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 010093 460 ETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEEL 510 (518)
Q Consensus 460 ~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 510 (518)
.+|..+|..++. .+.+.-.++-.....+|.+.|...+ .++|+.+
T Consensus 223 ~DiL~ai~~lv~-----q~~~g~~~v~N~Y~r~V~~eGN~~A--~~~i~~v 266 (364)
T PRK15062 223 LDILQSILMLVR-----QLEEGRAEVENQYTRVVKEEGNLKA--QELIAEV 266 (364)
T ss_pred HHHHHHHHHHHH-----HHHCCCceEEEccceeeCcccCHHH--HHHHHHH
Confidence 777777777775 4444444444555556666777554 6666554
No 216
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=56.33 E-value=21 Score=33.72 Aligned_cols=40 Identities=13% Similarity=-0.010 Sum_probs=28.9
Q ss_pred HHHHHHhhCCCCEEEecCCC-----c-cHHHHHHHcCCCeEEEecc
Q 010093 138 PLEQLLQEHKPDCLVADTFF-----P-WATDAAAKFGIPRLVFHGT 177 (518)
Q Consensus 138 ~l~~ll~~~~pDlVI~D~~~-----~-~~~~iA~~lgiP~v~~~~~ 177 (518)
.|...+++.+||+|++..-+ . .+..+|+.+|+|++.....
T Consensus 103 ~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 103 ALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 34444555579999986433 2 5789999999999987654
No 217
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=55.95 E-value=23 Score=37.15 Aligned_cols=46 Identities=4% Similarity=0.023 Sum_probs=39.0
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhh
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKS 81 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 81 (518)
.-+++.-.|+.|-..-.++++.+.+++|..|.+++.+...+.+...
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~ 309 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRN 309 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHH
Confidence 4567777789999999999999999999999999999877666543
No 218
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=55.64 E-value=67 Score=25.68 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=53.1
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCccccccchhhhhhHH
Q 010093 47 GHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENLDAITNEVNKGLIV 126 (518)
Q Consensus 47 GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 126 (518)
++-.-+..+++.|.+.|+++ ++ ++.....+.+. | +....+..+ ..
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l-~a-T~gT~~~l~~~-------g--i~~~~v~~~------~~------------------ 54 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKL-VA-TEGTAKYLQEA-------G--IPVEVVNKV------SE------------------ 54 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEE-EE-chHHHHHHHHc-------C--CeEEEEeec------CC------------------
Confidence 35567889999999999998 34 43433344433 3 333333100 00
Q ss_pred HHHHHHHhhHHHHHHHHhhCCCCEEEecCC-------CccHHHHHHHcCCCeEE
Q 010093 127 KFFGATMKLQEPLEQLLQEHKPDCLVADTF-------FPWATDAAAKFGIPRLV 173 (518)
Q Consensus 127 ~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~-------~~~~~~iA~~lgiP~v~ 173 (518)
..+.+.+.+++.++|+||.-.- .+.....|-.+|||++.
T Consensus 55 --------~~~~i~~~i~~~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 55 --------GRPNIVDLIKNGEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred --------CchhHHHHHHcCCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 1135677788889999998432 24567789999999884
No 219
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=55.15 E-value=2.4e+02 Score=28.48 Aligned_cols=114 Identities=21% Similarity=0.230 Sum_probs=61.6
Q ss_pred CcEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhcc
Q 010093 314 YSVVYVCFGSLANFTSAQLMEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILDH 393 (518)
Q Consensus 314 ~~vIyvslGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~ 393 (518)
+|-|.-.-||+. .+|++.+...+.-+++.++++. |-.+... .+..++| |
T Consensus 194 hP~I~aGqgTig-------~EIl~ql~~~~~AI~vpVGGGG-----------LiaGIat-----~vk~~~p--------~ 242 (457)
T KOG1250|consen 194 HPDIWAGQGTIG-------LEILEQLKEPDGAIVVPVGGGG-----------LIAGIAT-----GVKRVGP--------H 242 (457)
T ss_pred CchhhcCcchHH-------HHHHHhhcCCCCeEEEecCCch-----------hHHHHHH-----HHHHhCC--------C
Confidence 344555555543 5666666655556666676665 3333221 1111222 2
Q ss_pred CCCcccccccCchhHHHHHHhCCceec--CCcccccc------hhHHHHHHhhhcceeeccccccccccCccChHHHHHH
Q 010093 394 EAVGGFVTHCGWNSTLEAVAAGVPLVT--WPVAAEQF------YNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKA 465 (518)
Q Consensus 394 ~~~~~~ItHgG~~s~~eal~~GvP~l~--~P~~~DQ~------~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~a 465 (518)
--+-.+-|+ |..++..|+.+|.|+-. ++.++|-- .|+-++++.+-..+. ..+.+++..+
T Consensus 243 vkIIGVEt~-~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vv------------vV~~~ei~aa 309 (457)
T KOG1250|consen 243 VKIIGVETE-GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVV------------VVEDDEIAAA 309 (457)
T ss_pred CceEEEeec-CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEE------------EeccHHHHHH
Confidence 223345566 67899999999998732 22233321 233333322112222 4678899999
Q ss_pred HHHHhc
Q 010093 466 VNEIMV 471 (518)
Q Consensus 466 v~~ll~ 471 (518)
|.++++
T Consensus 310 I~~l~e 315 (457)
T KOG1250|consen 310 ILRLFE 315 (457)
T ss_pred HHHHHH
Confidence 999997
No 220
>PRK04148 hypothetical protein; Provisional
Probab=55.15 E-value=36 Score=28.61 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=27.4
Q ss_pred HHhhhhccCCCCCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 010093 21 SYLIRKLNMGSEIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 71 (518)
Q Consensus 21 ~~~~~~~~m~~~~~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 71 (518)
.||...+.-. +.+||+.+-.| .| ..+|..|.+.||+|+.+=.
T Consensus 6 ~~l~~~~~~~---~~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi 47 (134)
T PRK04148 6 EFIAENYEKG---KNKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDI 47 (134)
T ss_pred HHHHHhcccc---cCCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEEC
Confidence 4555544332 34688877666 33 3568889999999988744
No 221
>PRK05636 replicative DNA helicase; Provisional
Probab=55.13 E-value=42 Score=35.36 Aligned_cols=42 Identities=5% Similarity=0.052 Sum_probs=33.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCCCCccch
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFA-TRGVKASVITTPANAPYV 78 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~-~rGH~Vt~~~~~~~~~~~ 78 (518)
=|++..-|+.|-....+.+|...+ +.|..|.|++.+.....+
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 356778889999999999998876 458899999887654433
No 222
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=54.88 E-value=17 Score=33.78 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=26.0
Q ss_pred cEEEEEcCCCccChH------------HHHHHHHHHHhCCCeEEEEeCC
Q 010093 36 LHVFFFPFMAHGHMI------------PIVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~------------p~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
|||++...|+.-.+. --..||++|.++||+|+++...
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 355555555544443 3478899999999999998753
No 223
>PRK06988 putative formyltransferase; Provisional
Probab=54.76 E-value=63 Score=31.64 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
||||+|+-.+. ......++|.++||+|..+.+.
T Consensus 2 ~mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 2 KPRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred CcEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcC
Confidence 47999985544 4566778888899998877664
No 224
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=54.65 E-value=72 Score=32.26 Aligned_cols=105 Identities=20% Similarity=0.243 Sum_probs=70.1
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCcccc
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENLDA 115 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~~~ 115 (518)
.=||+-=-|+.|--.-+++++..|+++| .|.+++.++....++--..+. | ++. +..
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL---~----------------~~~--~~l-- 149 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRL---G----------------LPT--NNL-- 149 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHh---C----------------CCc--cce--
Confidence 4566777889999999999999999999 999999998766554332111 1 011 000
Q ss_pred ccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCc-c--------------------HHHHHHHcCCCeEEE
Q 010093 116 ITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFP-W--------------------ATDAAAKFGIPRLVF 174 (518)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~-~--------------------~~~iA~~lgiP~v~~ 174 (518)
....+...+.+.+.++..+||++|.|.... + ...+|...||+.+.+
T Consensus 150 -------------~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiV 216 (456)
T COG1066 150 -------------YLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIV 216 (456)
T ss_pred -------------EEehhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 011122345677777889999999996432 1 245677788887776
Q ss_pred ecc
Q 010093 175 HGT 177 (518)
Q Consensus 175 ~~~ 177 (518)
.+-
T Consensus 217 GHV 219 (456)
T COG1066 217 GHV 219 (456)
T ss_pred EEE
Confidence 553
No 225
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=54.32 E-value=67 Score=31.09 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=35.8
Q ss_pred CcccccccCchhHHHHHHh----CCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhc
Q 010093 396 VGGFVTHCGWNSTLEAVAA----GVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMV 471 (518)
Q Consensus 396 ~~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~ 471 (518)
++++|+-||-||+.+|+.. ++|++++-. .++ |-. . +.+.+++.+++.++++
T Consensus 64 ~d~vi~~GGDGt~l~~~~~~~~~~~pilGIn~--------G~l------GFL---~--------~~~~~~~~~~l~~~~~ 118 (291)
T PRK02155 64 ADLAVVLGGDGTMLGIGRQLAPYGVPLIGINH--------GRL------GFI---T--------DIPLDDMQETLPPMLA 118 (291)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEcC--------CCc------ccc---c--------cCCHHHHHHHHHHHHc
Confidence 4559999999999999874 567766542 111 211 1 4567778888888876
Q ss_pred CC
Q 010093 472 GD 473 (518)
Q Consensus 472 ~~ 473 (518)
|+
T Consensus 119 g~ 120 (291)
T PRK02155 119 GN 120 (291)
T ss_pred CC
Confidence 43
No 226
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=53.62 E-value=17 Score=32.47 Aligned_cols=39 Identities=10% Similarity=0.103 Sum_probs=32.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANA 75 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~ 75 (518)
||++.-.|+.|-+.-...+.++|.++|++|+++.++...
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~ 40 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQ 40 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHH
Confidence 688888888777777779999999999999999887543
No 227
>PRK09739 hypothetical protein; Provisional
Probab=53.41 E-value=31 Score=31.20 Aligned_cols=39 Identities=8% Similarity=0.180 Sum_probs=24.6
Q ss_pred CCCcEEEEE-cCCCc-cChH-HHHHHHHHHHhCCCeEEEEeC
Q 010093 33 IPQLHVFFF-PFMAH-GHMI-PIVDMAKLFATRGVKASVITT 71 (518)
Q Consensus 33 ~~~~kIl~~-~~~~~-GH~~-p~l~LA~~L~~rGH~Vt~~~~ 71 (518)
|+||||+++ .+|-. |... -...+++.|.++||+|+++--
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL 42 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDL 42 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEh
Confidence 357898855 45533 3222 245567777888999987653
No 228
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=53.28 E-value=26 Score=35.33 Aligned_cols=43 Identities=14% Similarity=0.280 Sum_probs=32.3
Q ss_pred HhhHHHHHHHHhhCCCCEEEecCCCccH----------HHHHHHcCCCeEEEe
Q 010093 133 MKLQEPLEQLLQEHKPDCLVADTFFPWA----------TDAAAKFGIPRLVFH 175 (518)
Q Consensus 133 ~~~~~~l~~ll~~~~pDlVI~D~~~~~~----------~~iA~~lgiP~v~~~ 175 (518)
+...+.+.+++++.+||++|+.+.+..+ ..+.++++||.+.-.
T Consensus 62 eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 62 EEAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 4445678888889999999999866532 235678999998854
No 229
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=53.27 E-value=26 Score=35.31 Aligned_cols=43 Identities=16% Similarity=0.303 Sum_probs=32.2
Q ss_pred HhhHHHHHHHHhhCCCCEEEecCCCccH----------HHHHHHcCCCeEEEe
Q 010093 133 MKLQEPLEQLLQEHKPDCLVADTFFPWA----------TDAAAKFGIPRLVFH 175 (518)
Q Consensus 133 ~~~~~~l~~ll~~~~pDlVI~D~~~~~~----------~~iA~~lgiP~v~~~ 175 (518)
+...+.+.+++++.+||++|+.+.+..+ ..+.++++||.+.-.
T Consensus 62 eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 62 EEAVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 4445677888889999999999866532 235678999998854
No 230
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=52.93 E-value=93 Score=29.52 Aligned_cols=43 Identities=23% Similarity=0.265 Sum_probs=33.0
Q ss_pred CcEeecCccHHHhhccCCCcccccccCchhHHHHHHhCCceecCCc
Q 010093 378 GLIIRGWAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPV 423 (518)
Q Consensus 378 nv~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~ 423 (518)
.+.+..-++-.+++.+++ ++||-.+ ..-.||+.+|+|++++..
T Consensus 184 ~~~~~~~~~~~~Ll~~s~--~VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSD--AVVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred eEEECCCCCHHHHHHhCC--EEEEECC-HHHHHHHHcCCceEEecC
Confidence 444556778889998855 4888854 478999999999999763
No 231
>PRK09165 replicative DNA helicase; Provisional
Probab=52.78 E-value=73 Score=33.51 Aligned_cols=42 Identities=12% Similarity=0.024 Sum_probs=33.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC---------------CCeEEEEeCCCCccch
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATR---------------GVKASVITTPANAPYV 78 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~r---------------GH~Vt~~~~~~~~~~~ 78 (518)
=|++..-|+.|-....+.+|...+.+ |..|.|++-+.....+
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql 275 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL 275 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence 36677788999999999999888753 7899999998765544
No 232
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=52.71 E-value=2.1e+02 Score=27.07 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=31.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 38 VFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 38 Il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
+++.-.|+.|=....++++...+++|..|.|++.+.
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 556667799999999999999988999999999875
No 233
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=52.55 E-value=1.3e+02 Score=30.77 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=34.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCCCCccch
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFA-TRGVKASVITTPANAPYV 78 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~-~rGH~Vt~~~~~~~~~~~ 78 (518)
=+++...|+.|-....+.+|..++ +.|+.|.|++.+.....+
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l 238 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQL 238 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHH
Confidence 356777889999999999998887 679999999988655443
No 234
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=52.43 E-value=30 Score=32.15 Aligned_cols=41 Identities=17% Similarity=0.064 Sum_probs=34.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccc
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPY 77 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~ 77 (518)
-+++.-.++.|-.....+++.+.+++|..|.|++.+.....
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~ 67 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKS 67 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHH
Confidence 45666777999999999999888889999999999765443
No 235
>PRK09620 hypothetical protein; Provisional
Probab=50.66 E-value=39 Score=31.41 Aligned_cols=37 Identities=8% Similarity=-0.118 Sum_probs=27.2
Q ss_pred cEEEEEcCCCccChH------------HHHHHHHHHHhCCCeEEEEeCC
Q 010093 36 LHVFFFPFMAHGHMI------------PIVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~------------p~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
.||++...|+.=.+. --..||++|.++||+|+++...
T Consensus 4 k~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 4 KKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 467777666544433 3478999999999999999764
No 236
>PRK11823 DNA repair protein RadA; Provisional
Probab=50.60 E-value=1.3e+02 Score=31.05 Aligned_cols=42 Identities=17% Similarity=0.119 Sum_probs=34.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYV 78 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 78 (518)
-+++.--|+.|-..-+++++..+.++|+.|.+++.+...+.+
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQI 123 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHH
Confidence 345666779999999999999999999999999998765544
No 237
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=50.35 E-value=1.6e+02 Score=25.22 Aligned_cols=138 Identities=16% Similarity=0.169 Sum_probs=68.9
Q ss_pred EEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhccCCC
Q 010093 317 VYVCFGSLANFTSAQLMEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAV 396 (518)
Q Consensus 317 IyvslGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~~~ 396 (518)
|-|=.||.. +.....++...|+.++..+-..+...- ..|+.+... +. -+....+
T Consensus 3 V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saH----------R~p~~l~~~-----------~~---~~~~~~~ 56 (150)
T PF00731_consen 3 VAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAH----------RTPERLLEF-----------VK---EYEARGA 56 (150)
T ss_dssp EEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TT----------TSHHHHHHH-----------HH---HTTTTTE
T ss_pred EEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEecc----------CCHHHHHHH-----------HH---HhccCCC
Confidence 445566654 577788888999988876544443321 134433211 11 0111124
Q ss_pred cccccccCch----hHHHHHHhCCceecCCcccccchh----HHHHHHhhhcceeeccccccccccCccChHHHHHHHHH
Q 010093 397 GGFVTHCGWN----STLEAVAAGVPLVTWPVAAEQFYN----EKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNE 468 (518)
Q Consensus 397 ~~~ItHgG~~----s~~eal~~GvP~l~~P~~~DQ~~n----a~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ 468 (518)
+.||.=.|.. ++.-+ ..-.|+|.+|....+... ...+..=.|+++..-.- ++..++.-+ ..+
T Consensus 57 ~viIa~AG~~a~Lpgvva~-~t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i------~~~~nAA~~---A~~ 126 (150)
T PF00731_consen 57 DVIIAVAGMSAALPGVVAS-LTTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI------NNGFNAALL---AAR 126 (150)
T ss_dssp SEEEEEEESS--HHHHHHH-HSSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS------THHHHHHHH---HHH
T ss_pred EEEEEECCCcccchhhhee-ccCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc------cCchHHHHH---HHH
Confidence 4577777753 33333 336899999987664422 22231122566544321 012344434 345
Q ss_pred HhcCChHHHHHHHHHHHHHHHHH
Q 010093 469 IMVGDRAEEMRSRAKALGKMAKR 491 (518)
Q Consensus 469 ll~~~~~~~~~~~a~~l~~~~~~ 491 (518)
+|. -.|++++++.+..+++.++
T Consensus 127 ILa-~~d~~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 127 ILA-LKDPELREKLRAYREKMKE 148 (150)
T ss_dssp HHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHh-cCCHHHHHHHHHHHHHHHc
Confidence 554 2267999999999888874
No 238
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=49.96 E-value=1.1e+02 Score=31.92 Aligned_cols=34 Identities=38% Similarity=0.362 Sum_probs=27.0
Q ss_pred HHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEE
Q 010093 138 PLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVF 174 (518)
Q Consensus 138 ~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~ 174 (518)
++.+.+++.+||++|.. .....+|.++|||++.+
T Consensus 386 e~~~~i~~~~pDl~ig~---~~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 386 ELLKLLLEYKADLLIAG---GKERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHhhcCCCEEEEc---cchHHHHHhcCCCEEEc
Confidence 56677788899999987 33466888999999875
No 239
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=49.86 E-value=39 Score=35.04 Aligned_cols=41 Identities=10% Similarity=0.068 Sum_probs=33.7
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 010093 38 VFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYV 78 (518)
Q Consensus 38 Il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 78 (518)
+++.--|+.|-..-++.++..+.++|+.|.+++.+.....+
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi 137 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQI 137 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHH
Confidence 45666679999999999999999999999999988654433
No 240
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=49.70 E-value=19 Score=34.06 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=39.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhh
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKS 81 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 81 (518)
...++|+=.|+.|-..-..+||.+|.++|+.|+|++.++....+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 34788888888888889999999999999999999998866655543
No 241
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=49.66 E-value=2.8e+02 Score=29.14 Aligned_cols=115 Identities=15% Similarity=0.021 Sum_probs=71.8
Q ss_pred CcEeecCccHHH---hhccCCCccccc--ccCch-hHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccc
Q 010093 378 GLIIRGWAPQVL---ILDHEAVGGFVT--HCGWN-STLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCR 451 (518)
Q Consensus 378 nv~~~~~~pq~~---lL~~~~~~~~It--HgG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~ 451 (518)
-+++.+.+|+.+ ++.-++| ++|| .-|+| ...|.++++..-=++=+..+ +.-|+ +.+.-|+.+++
T Consensus 363 v~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSe-faGaa---~~l~~AllVNP----- 432 (487)
T TIGR02398 363 LQFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSE-FAGAA---VELKGALLTNP----- 432 (487)
T ss_pred EEEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEec-cccch---hhcCCCEEECC-----
Confidence 356678888766 4444665 2333 45887 45599999872111111222 22222 24455888876
Q ss_pred cccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhh
Q 010093 452 IVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEELRLS 513 (518)
Q Consensus 452 ~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 513 (518)
.+.+++.++|.++|+ .+.++=+++.+++.+.++ .-++..=.+.+++.|..+
T Consensus 433 -----~d~~~~A~ai~~AL~-m~~~Er~~R~~~l~~~v~-----~~d~~~W~~~fl~~l~~~ 483 (487)
T TIGR02398 433 -----YDPVRMDETIYVALA-MPKAEQQARMREMFDAVN-----YYDVQRWADEFLAAVSPQ 483 (487)
T ss_pred -----CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhhhc
Confidence 489999999999997 444566777777777766 345556567777777643
No 242
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=49.56 E-value=74 Score=27.63 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=53.9
Q ss_pred hHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEe
Q 010093 302 LECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLII 381 (518)
Q Consensus 302 ~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~ 381 (518)
.++-+++...+ ...++ |.. .-......++..+.+-+++-+++... .. ..+ . ......
T Consensus 21 ~~lg~~La~~g---~~lv~-Gg~----~GlM~a~a~ga~~~gg~viGVlp~~l---~~--~~~-~---------~~~~i~ 77 (159)
T TIGR00725 21 YRLGKELAKKG---HILIN-GGR----TGVMEAVSKGAREAGGLVVGILPDED---FA--GNP-Y---------LTIKVK 77 (159)
T ss_pred HHHHHHHHHCC---CEEEc-CCc----hhHHHHHHHHHHHCCCeEEEECChhh---cc--CCC-C---------ceEEEE
Confidence 56777886653 44555 432 22333455566666777776665432 00 000 0 111223
Q ss_pred ecC-ccHHHhhccCCCcccccccCchhHHH---HHHhCCceecCCc
Q 010093 382 RGW-APQVLILDHEAVGGFVTHCGWNSTLE---AVAAGVPLVTWPV 423 (518)
Q Consensus 382 ~~~-~pq~~lL~~~~~~~~ItHgG~~s~~e---al~~GvP~l~~P~ 423 (518)
.++ .+.+.++...+-..++-=||.||..| ++.+++|+++++.
T Consensus 78 ~~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 78 TGMNFARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred CCCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 344 45555554433344555688887665 5889999998874
No 243
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=49.26 E-value=1e+02 Score=26.19 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=21.0
Q ss_pred CcccccccCc------hhHHHHHHhCCceecCC
Q 010093 396 VGGFVTHCGW------NSTLEAVAAGVPLVTWP 422 (518)
Q Consensus 396 ~~~~ItHgG~------~s~~eal~~GvP~l~~P 422 (518)
..++++|+|. +.+.+|...++|+|++.
T Consensus 60 ~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~ 92 (155)
T cd07035 60 PGVVLVTSGPGLTNAVTGLANAYLDSIPLLVIT 92 (155)
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 3448888664 47788999999999985
No 244
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=49.10 E-value=97 Score=32.39 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=26.6
Q ss_pred HHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEE
Q 010093 138 PLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLV 173 (518)
Q Consensus 138 ~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~ 173 (518)
++.+.+++.+||++|.. .....+|+++|||++.
T Consensus 384 e~~~~i~~~~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 384 ELYKMLKEAKADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred HHHHHHhhcCCCEEEec---CchhhhhhhcCCCEEE
Confidence 45566777899999997 4566799999999984
No 245
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=49.05 E-value=2.8e+02 Score=27.50 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=36.1
Q ss_pred HHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCc-cHHHHHHHcCCCeEEEecchHHHHH
Q 010093 126 VKFFGATMKLQEPLEQLLQEHKPDCLVADTFFP-WATDAAAKFGIPRLVFHGTSFFSLC 183 (518)
Q Consensus 126 ~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~-~~~~iA~~lgiP~v~~~~~~~~~~~ 183 (518)
..+..+...+.-.++.+++ ..||+.|=..-.+ .-+.+++..++|++.+.+.|....-
T Consensus 130 TllgQaigsmIl~~Eai~r-~~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~D 187 (465)
T KOG1387|consen 130 TLLGQAIGSMILAFEAIIR-FPPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTD 187 (465)
T ss_pred ehHHHHHHHHHHHHHHHHh-CCchheEecCCCcchhHHHHHHccCceEEEEecccccHH
Confidence 3344444444445555443 7899888665444 3455666889999998887765543
No 246
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=49.00 E-value=1.7e+02 Score=25.11 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=23.8
Q ss_pred CCCccChHHHHHHHHHHHhCCCeEEEE
Q 010093 43 FMAHGHMIPIVDMAKLFATRGVKASVI 69 (518)
Q Consensus 43 ~~~~GH~~p~l~LA~~L~~rGH~Vt~~ 69 (518)
.++-|-..-.+.|++.|.++|.+|.++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 456788889999999999999999886
No 247
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=48.85 E-value=45 Score=29.37 Aligned_cols=42 Identities=10% Similarity=-0.033 Sum_probs=34.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchh
Q 010093 38 VFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVS 79 (518)
Q Consensus 38 Il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 79 (518)
+++.-.|+.|=..-.+.++.+.++.|..|.+++.+...+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~ 43 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELI 43 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHH
Confidence 455666788999999999999999999999999987665543
No 248
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=48.23 E-value=1.1e+02 Score=31.43 Aligned_cols=42 Identities=12% Similarity=0.106 Sum_probs=34.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCCCCccch
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFAT-RGVKASVITTPANAPYV 78 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~~~~~~~ 78 (518)
=+++...|+.|=....+.+|..++. .|+.|.|++.+.....+
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i 239 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQL 239 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHH
Confidence 4567778899999999999999875 69999999998765544
No 249
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=48.14 E-value=88 Score=30.31 Aligned_cols=95 Identities=15% Similarity=0.053 Sum_probs=57.5
Q ss_pred hHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEe
Q 010093 302 LECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLII 381 (518)
Q Consensus 302 ~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~ 381 (518)
.++.+.....+-+++-+-........+...+..+.++++++|..+++-+|... .... +.. - ..
T Consensus 116 ~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~------~~~~-~~~---------~-~~ 178 (293)
T COG2159 116 EELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGP------GGAG-LEK---------G-HS 178 (293)
T ss_pred HHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCC------CCcc-ccc---------C-CC
Confidence 56666666544344443333333334455578899999999999999877654 1000 100 0 11
Q ss_pred ecCccHHHhhccCCCcccccccC--chhHHHHHH
Q 010093 382 RGWAPQVLILDHEAVGGFVTHCG--WNSTLEAVA 413 (518)
Q Consensus 382 ~~~~pq~~lL~~~~~~~~ItHgG--~~s~~eal~ 413 (518)
.++.=.......|+++.++.|+| ..-..|++.
T Consensus 179 ~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a~~ 212 (293)
T COG2159 179 DPLYLDDVARKFPELKIVLGHMGEDYPWELEAIE 212 (293)
T ss_pred CchHHHHHHHHCCCCcEEEEecCCCCchhHHHHH
Confidence 12222455667799999999999 666666633
No 250
>PLN02939 transferase, transferring glycosyl groups
Probab=47.55 E-value=34 Score=38.65 Aligned_cols=41 Identities=12% Similarity=0.190 Sum_probs=31.8
Q ss_pred CCCcEEEEEcC-----C-CccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 33 IPQLHVFFFPF-----M-AHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 33 ~~~~kIl~~~~-----~-~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
.+.|||+|++. . +.|=-.-...|.++|++.||+|.+++|.+
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 36799998862 2 33444557789999999999999999965
No 251
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=47.02 E-value=1.9e+02 Score=25.07 Aligned_cols=34 Identities=12% Similarity=0.170 Sum_probs=29.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 70 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 70 (518)
-|.++..++.|-....+.+|-..+.+|+.|.|+-
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQ 37 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQ 37 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4667788899999999999999999999999943
No 252
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=46.82 E-value=33 Score=29.07 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=36.0
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
++.||++.+.+.-||-.-..-+++.|+..|.+|.....-.
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~ 50 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQ 50 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcC
Confidence 5789999999999999999999999999999998765543
No 253
>PRK10867 signal recognition particle protein; Provisional
Probab=46.42 E-value=1.9e+02 Score=29.88 Aligned_cols=41 Identities=12% Similarity=0.214 Sum_probs=34.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeCCCCccc
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATR-GVKASVITTPANAPY 77 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~ 77 (518)
-|+|+-.++.|-..-...||..|+++ |+.|.+++.+.+...
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 35566677999999999999999999 999999999876653
No 254
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=46.36 E-value=28 Score=36.07 Aligned_cols=63 Identities=17% Similarity=0.137 Sum_probs=44.6
Q ss_pred hHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010093 407 STLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKAL 485 (518)
Q Consensus 407 s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l 485 (518)
++.||+++|+|+++.=.. .-+..+ +..--|.-.++. .-....+..++.++.. |++++.+..+=
T Consensus 381 v~IEAMa~glPvvAt~~G----GP~EiV-~~~~tG~l~dp~--------~e~~~~~a~~~~kl~~---~p~l~~~~~~~ 443 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATNNG----GPAEIV-VHGVTGLLIDPG--------QEAVAELADALLKLRR---DPELWARMGKN 443 (495)
T ss_pred eeHHHHhcCCCEEEecCC----CceEEE-EcCCcceeeCCc--------hHHHHHHHHHHHHHhc---CHHHHHHHHHH
Confidence 799999999999987443 345555 355557766543 3344479999999998 88887665443
No 255
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=46.23 E-value=81 Score=32.12 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=24.8
Q ss_pred EEEEEc-CCCccChHHHHHHHHHHHhCCCeEE
Q 010093 37 HVFFFP-FMAHGHMIPIVDMAKLFATRGVKAS 67 (518)
Q Consensus 37 kIl~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt 67 (518)
+|++.. ..+.|-..-.+.|.++|++||+.|.
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vq 33 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQ 33 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCccc
Confidence 344433 4478899999999999999999995
No 256
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=46.23 E-value=1.3e+02 Score=29.06 Aligned_cols=19 Identities=26% Similarity=0.651 Sum_probs=15.7
Q ss_pred hHHHHHHHHhhCCCCEEEe
Q 010093 135 LQEPLEQLLQEHKPDCLVA 153 (518)
Q Consensus 135 ~~~~l~~ll~~~~pDlVI~ 153 (518)
....+.+++++.+||+||+
T Consensus 109 ~~~~L~~iIr~~~PdvVvT 127 (283)
T TIGR03446 109 AAEPLVRVIREFRPHVITT 127 (283)
T ss_pred HHHHHHHHHHHcCCEEEEe
Confidence 4567888888999999987
No 257
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.58 E-value=1.3e+02 Score=26.15 Aligned_cols=76 Identities=21% Similarity=0.201 Sum_probs=58.3
Q ss_pred hhHHHHHHhCCceecCC-cccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHH
Q 010093 406 NSTLEAVAAGVPLVTWP-VAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKA 484 (518)
Q Consensus 406 ~s~~eal~~GvP~l~~P-~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~ 484 (518)
-|+.|...+|.=.+.=- +.-=+..|+++. ++.|.=-.+..+ ..+.+.|.++..+=|+++...+++..+.+
T Consensus 88 ~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~-~rFgfPfI~aVk--------g~~k~~Il~a~~~Rl~n~~e~E~~tAl~e 158 (176)
T COG3195 88 ESTSEQASAGLDRLSPEEFARFTELNAAYV-ERFGFPFIIAVK--------GNTKDTILAAFERRLDNDREQEFATALAE 158 (176)
T ss_pred hhHHHHHhcCcccCCHHHHHHHHHHHHHHH-HhcCCceEEeec--------CCCHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 47788888876554311 111246799999 699998887776 67899999999988988888999999999
Q ss_pred HHHHHH
Q 010093 485 LGKMAK 490 (518)
Q Consensus 485 l~~~~~ 490 (518)
+.++.+
T Consensus 159 I~rIA~ 164 (176)
T COG3195 159 IERIAL 164 (176)
T ss_pred HHHHHH
Confidence 888866
No 258
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=45.52 E-value=2.3e+02 Score=25.49 Aligned_cols=105 Identities=15% Similarity=0.104 Sum_probs=60.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCccc
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENLD 114 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~~ 114 (518)
.-.|.++...++|-....+.+|-..+.+|+.|.++-.=.-....... . ....-.++.+..... ++... .
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~-~-~l~~l~~v~~~~~g~-----~~~~~--~-- 90 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGER-N-LLEFGGGVEFHVMGT-----GFTWE--T-- 90 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHH-H-HHhcCCCcEEEECCC-----CCccc--C--
Confidence 34688999999999999999999999999999988653321000000 0 000011455544321 11110 0
Q ss_pred cccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCc
Q 010093 115 AITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFP 158 (518)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~ 158 (518)
. .. . .-...+.......++.+.+.++|+||.|....
T Consensus 91 ~--~~---~---e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~ 126 (191)
T PRK05986 91 Q--DR---E---RDIAAAREGWEEAKRMLADESYDLVVLDELTY 126 (191)
T ss_pred C--Cc---H---HHHHHHHHHHHHHHHHHhCCCCCEEEEehhhH
Confidence 0 00 1 11223334455666777788999999997553
No 259
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=45.48 E-value=2.9e+02 Score=31.62 Aligned_cols=110 Identities=13% Similarity=-0.019 Sum_probs=66.9
Q ss_pred ecCccHHH---hhccCCCccccc---ccCch-hHHHHHHhCCceecCCcccccchhHHHHHHhhh-cceeeccccccccc
Q 010093 382 RGWAPQVL---ILDHEAVGGFVT---HCGWN-STLEAVAAGVPLVTWPVAAEQFYNEKMVNEILK-IGVGVGIQKWCRIV 453 (518)
Q Consensus 382 ~~~~pq~~---lL~~~~~~~~It---HgG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G-~G~~l~~~~~~~~~ 453 (518)
...+|+.+ ++.-++| ++. .-|+| ...|+++++.---++++..+--.-|. .+| -|+.+++
T Consensus 445 ~~~l~~eeL~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfaGaa~----~L~~~AllVNP------- 511 (934)
T PLN03064 445 DRSLDFHALCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFAGAAQ----SLGAGAILVNP------- 511 (934)
T ss_pred ccCCCHHHHHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCCCchHH----HhCCceEEECC-------
Confidence 34466554 4545555 433 34776 55699999653223333333333333 444 4677765
Q ss_pred cCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhh
Q 010093 454 GDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEELRLS 513 (518)
Q Consensus 454 ~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 513 (518)
.+.+++.++|.++|+ .+.++-+++.+++.+.++ .-+...=++.|+++|...
T Consensus 512 ---~D~~~vA~AI~~AL~-M~~~Er~~r~~~~~~~V~-----~~d~~~Wa~~fl~~L~~~ 562 (934)
T PLN03064 512 ---WNITEVAASIAQALN-MPEEEREKRHRHNFMHVT-----THTAQEWAETFVSELNDT 562 (934)
T ss_pred ---CCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhhcc-----cCCHHHHHHHHHHHHHHH
Confidence 589999999999996 334466666666666655 345666677788877754
No 260
>PRK13768 GTPase; Provisional
Probab=45.46 E-value=69 Score=30.25 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=30.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
-+++.-.++.|-..-...++..|..+|+.|.++..+.
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 4556666788999999999999999999999997654
No 261
>PLN02929 NADH kinase
Probab=45.37 E-value=26 Score=33.93 Aligned_cols=66 Identities=18% Similarity=0.211 Sum_probs=41.9
Q ss_pred CcccccccCchhHHHHHHh---CCceecCCccc------ccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHH
Q 010093 396 VGGFVTHCGWNSTLEAVAA---GVPLVTWPVAA------EQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAV 466 (518)
Q Consensus 396 ~~~~ItHgG~~s~~eal~~---GvP~l~~P~~~------DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av 466 (518)
++++|+-||-||+..|... ++|++++=... .++.|.-.. ..-+|--. ..+.+++.+++
T Consensus 65 ~Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~--~r~lGfL~-----------~~~~~~~~~~L 131 (301)
T PLN02929 65 VDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDA--RRSTGHLC-----------AATAEDFEQVL 131 (301)
T ss_pred CCEEEEECCcHHHHHHHHHcCCCCcEEEEECCCccccccccccccccc--ccCccccc-----------cCCHHHHHHHH
Confidence 4569999999999998654 68888765532 112222110 11234332 46788999999
Q ss_pred HHHhcCCh
Q 010093 467 NEIMVGDR 474 (518)
Q Consensus 467 ~~ll~~~~ 474 (518)
.++++|+.
T Consensus 132 ~~il~g~~ 139 (301)
T PLN02929 132 DDVLFGRL 139 (301)
T ss_pred HHHHcCCc
Confidence 99997543
No 262
>PRK07773 replicative DNA helicase; Validated
Probab=45.07 E-value=1.3e+02 Score=34.43 Aligned_cols=42 Identities=12% Similarity=0.104 Sum_probs=34.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeCCCCccch
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATR-GVKASVITTPANAPYV 78 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~~ 78 (518)
=|++..-|+.|-....+.+|...+.+ |..|.|++-+.....+
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql 261 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQL 261 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHH
Confidence 36778888999999999999998754 8899999987665544
No 263
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=44.66 E-value=20 Score=31.94 Aligned_cols=42 Identities=10% Similarity=0.150 Sum_probs=31.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchh
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVS 79 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 79 (518)
||++...++-|-+. ...+.+.|.++|++|.++.++.....+.
T Consensus 1 ~illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 1 RIVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred CEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 45555555555444 4889999999999999999987666554
No 264
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=44.57 E-value=77 Score=29.07 Aligned_cols=44 Identities=11% Similarity=0.003 Sum_probs=35.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhh
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSK 80 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~ 80 (518)
-+++.-.|+.|-....+.++...+++|+.|.+++.+...+.+.+
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~ 61 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILG 61 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHH
Confidence 35566677889999999999888888999999999886655543
No 265
>PRK07206 hypothetical protein; Provisional
Probab=44.55 E-value=83 Score=32.09 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=23.6
Q ss_pred HHHHHHhhCCCCEEEecC--CCccHHHHHHHcCCCe
Q 010093 138 PLEQLLQEHKPDCLVADT--FFPWATDAAAKFGIPR 171 (518)
Q Consensus 138 ~l~~ll~~~~pDlVI~D~--~~~~~~~iA~~lgiP~ 171 (518)
.+.+++++.++|.||... ....+..+++.+++|+
T Consensus 61 ~l~~~~~~~~~d~vi~~~e~~~~~~a~l~~~l~l~~ 96 (416)
T PRK07206 61 DLVEFLRKLGPEAIIAGAESGVELADRLAEILTPQY 96 (416)
T ss_pred HHHHHHHHcCCCEEEECCCccHHHHHHHHHhcCCCc
Confidence 555667788999999643 2334566778888883
No 266
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=44.33 E-value=45 Score=30.22 Aligned_cols=40 Identities=13% Similarity=0.017 Sum_probs=35.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 74 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 74 (518)
..||++.+.++-.|-....-++.-|...|++|+++...--
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p 121 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVP 121 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 5689999999999999999999999999999998876543
No 267
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=44.06 E-value=1.3e+02 Score=29.85 Aligned_cols=146 Identities=17% Similarity=0.252 Sum_probs=76.4
Q ss_pred hHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEe
Q 010093 302 LECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLII 381 (518)
Q Consensus 302 ~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~ 381 (518)
-+..+.-...+++-|||++-|--.. .+-.-..+.+|..+--..|-....... .|.
T Consensus 125 ldAl~iA~~nPdk~VVF~avGFETT-aP~~A~~i~~a~~~~~~Nfsvl~~hkl-----------~PP------------- 179 (369)
T TIGR00075 125 MDALKIAKENPDRKVVFFAIGFETT-APTTASTLLSAKAEDINNFFFLSAHRL-----------VPP------------- 179 (369)
T ss_pred HHHHHHHHHCCCCeEEEEecCchhc-cHHHHHHHHHHHHcCCCcEEEEEeccc-----------cHH-------------
Confidence 4444555666778899999887654 344444455555432223322221111 222
Q ss_pred ecCccHHHhhccCC--CcccccccCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccCh
Q 010093 382 RGWAPQVLILDHEA--VGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKR 459 (518)
Q Consensus 382 ~~~~pq~~lL~~~~--~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~ 459 (518)
....||..++ +++||.-|=..++ .+-+++ .-.. ++.|+-..+. .|.+
T Consensus 180 ----a~~~ll~~~~~~idgfi~PGHVs~I---------------~G~~~y-~~l~-~~y~~P~VVa----------GFEp 228 (369)
T TIGR00075 180 ----AVEALLENPAVQIDAFLAPGHVSTI---------------IGAKPY-APIA-EKYKIPIVIA----------GFEP 228 (369)
T ss_pred ----HHHHHHcCCCCCccEEEecCEEEEE---------------eccchh-HHHH-HHcCCCeEEe----------ccCH
Confidence 2455665543 5667665432222 222221 1122 4566666663 4677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 010093 460 ETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEEL 510 (518)
Q Consensus 460 ~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 510 (518)
.+|..+|..++. .+.+.-.++-.....+|.+.|...+ .++|+.+
T Consensus 229 ~DiL~~i~~ll~-----qi~~g~~~v~N~Y~R~V~~eGN~~A--q~~i~~v 272 (369)
T TIGR00075 229 VDILQAIYMLLK-----QAISGEAKVENQYKRAVKPEGNVKA--QKAIDEV 272 (369)
T ss_pred HHHHHHHHHHHH-----HHHCCCceEEEeeceeeCCccCHHH--HHHHHHH
Confidence 777777777775 4444444444555556666677554 5666544
No 268
>PRK05748 replicative DNA helicase; Provisional
Probab=43.83 E-value=1.8e+02 Score=30.06 Aligned_cols=42 Identities=10% Similarity=0.085 Sum_probs=34.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCCCCccch
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFA-TRGVKASVITTPANAPYV 78 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~-~rGH~Vt~~~~~~~~~~~ 78 (518)
=|++...|+.|=....+.+|...+ +.|+.|.|++.+.....+
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l 247 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESL 247 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHH
Confidence 467788889999999999999987 469999999988765544
No 269
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=43.68 E-value=1e+02 Score=30.28 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=30.4
Q ss_pred EEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 40 FFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 40 ~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
=++.++.|-.--.+.||++|.+||..|-+++-.+
T Consensus 54 NltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGY 87 (336)
T COG1663 54 NLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGY 87 (336)
T ss_pred cEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCc
Confidence 3567899999999999999999999999998864
No 270
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=43.62 E-value=61 Score=25.35 Aligned_cols=39 Identities=10% Similarity=0.148 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
++.||+++|..+.|--.-...+=+.+.++|.++.+-...
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~ 40 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGS 40 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEec
Confidence 467999999887775555566666777788887766554
No 271
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=43.40 E-value=40 Score=31.39 Aligned_cols=30 Identities=37% Similarity=0.473 Sum_probs=23.7
Q ss_pred CCEEE-ecCCCc-cHHHHHHHcCCCeEEEecc
Q 010093 148 PDCLV-ADTFFP-WATDAAAKFGIPRLVFHGT 177 (518)
Q Consensus 148 pDlVI-~D~~~~-~~~~iA~~lgiP~v~~~~~ 177 (518)
||+++ +|+..- -+..=|.++|||+|.+.-+
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecC
Confidence 99887 555444 6888899999999998665
No 272
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=43.19 E-value=2.7e+02 Score=25.74 Aligned_cols=42 Identities=12% Similarity=-0.092 Sum_probs=35.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYV 78 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 78 (518)
-+++.-.|+.|-....++++.+-+++|..|.|++.+...+.+
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i 64 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQV 64 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHH
Confidence 567777889999999999988877899999999998766544
No 273
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=43.09 E-value=1.6e+02 Score=23.56 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=50.5
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCccccccchhhhhhHHH
Q 010093 48 HMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCENLDAITNEVNKGLIVK 127 (518)
Q Consensus 48 H~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 127 (518)
+=.-++.+|+.|.+.|+++ + +++.....+... | +....+-- .+.+
T Consensus 10 ~K~~~~~~a~~l~~~G~~i-~-AT~gTa~~L~~~-------G--i~~~~v~~------~~~~------------------ 54 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL-F-ATGGTSRVLADA-------G--IPVRAVSK------RHED------------------ 54 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE-E-ECcHHHHHHHHc-------C--CceEEEEe------cCCC------------------
Confidence 3355789999999999988 3 444434444433 3 33333310 0110
Q ss_pred HHHHHHhhHHHHHHHHhh-CCCCEEEecC--CC--------ccHHHHHHHcCCCeEE
Q 010093 128 FFGATMKLQEPLEQLLQE-HKPDCLVADT--FF--------PWATDAAAKFGIPRLV 173 (518)
Q Consensus 128 ~~~~~~~~~~~l~~ll~~-~~pDlVI~D~--~~--------~~~~~iA~~lgiP~v~ 173 (518)
..+.+.+++++ .++|+||.-+ .. +.....|...+||++.
T Consensus 55 -------g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 55 -------GEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred -------CCcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 12356677777 8999999732 22 2346679999999876
No 274
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=43.06 E-value=2.5e+02 Score=25.19 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=24.0
Q ss_pred HHHHHHHhhCCCCEEEecCCCc-cHHHHHHHcCCCeEEEec
Q 010093 137 EPLEQLLQEHKPDCLVADTFFP-WATDAAAKFGIPRLVFHG 176 (518)
Q Consensus 137 ~~l~~ll~~~~pDlVI~D~~~~-~~~~iA~~lgiP~v~~~~ 176 (518)
+.+.+.+++.++|++|+-.+.. ....+-......++-+++
T Consensus 69 ~~~~~~l~~~~~D~iv~~~~~~il~~~~l~~~~~~~iNiHp 109 (190)
T TIGR00639 69 QAIIEELRAHEVDLVVLAGFMRILGPTFLSRFAGRILNIHP 109 (190)
T ss_pred HHHHHHHHhcCCCEEEEeCcchhCCHHHHhhccCCEEEEeC
Confidence 4567778889999999876544 333333333334444433
No 275
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=43.00 E-value=86 Score=27.30 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=21.4
Q ss_pred CcccccccCch------hHHHHHHhCCceecCC
Q 010093 396 VGGFVTHCGWN------STLEAVAAGVPLVTWP 422 (518)
Q Consensus 396 ~~~~ItHgG~~------s~~eal~~GvP~l~~P 422 (518)
..++++|+|-| .+.||...++|||++.
T Consensus 61 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 61 PVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred CEEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 33478888754 6789999999999984
No 276
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=42.90 E-value=28 Score=32.45 Aligned_cols=44 Identities=11% Similarity=0.037 Sum_probs=32.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCccchhh
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATR--GVKASVITTPANAPYVSK 80 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~ 80 (518)
||++.-.|+.+-+.-...+++.|.++ ||+|.++.++.....+..
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~ 46 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRM 46 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhh
Confidence 45555555544447899999999999 999999999876655543
No 277
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=42.87 E-value=75 Score=29.51 Aligned_cols=95 Identities=11% Similarity=0.139 Sum_probs=51.9
Q ss_pred CCcEEEEecCCccc---CCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHh-c--C-CCcEeecCc
Q 010093 313 PYSVVYVCFGSLAN---FTSAQLMEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRM-E--G-KGLIIRGWA 385 (518)
Q Consensus 313 ~~~vIyvslGS~~~---~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~-~--~-~nv~~~~~~ 385 (518)
+++.|.+..|+... .+.+.+..+++.+.+.+++++...+..+ .-+...... . . ..+.+.+-.
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 172 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEE-----------QEKEIADQIAAGLQNPVINLAGKT 172 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHH-----------HHHHHHHHHHTTHTTTTEEETTTS
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchH-----------HHHHHHHHHHHhcccceEeecCCC
Confidence 45678888888653 6889999999999888866654433221 000111111 1 1 123333333
Q ss_pred --cH-HHhhccCCCcccccccCchhHHHHHHhCCceecC
Q 010093 386 --PQ-VLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTW 421 (518)
Q Consensus 386 --pq-~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~ 421 (518)
.+ ..++.+ ++++|+. -.|.+.=|.+.|+|+|++
T Consensus 173 ~l~e~~ali~~--a~~~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 173 SLRELAALISR--ADLVIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp -HHHHHHHHHT--SSEEEEE-SSHHHHHHHHTT--EEEE
T ss_pred CHHHHHHHHhc--CCEEEec-CChHHHHHHHHhCCEEEE
Confidence 33 567877 4448887 567899999999999987
No 278
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.80 E-value=2.6e+02 Score=26.04 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=25.5
Q ss_pred HHHHhh-CCCCEEEecCCCc---cHHHHHHHcCCCeEE
Q 010093 140 EQLLQE-HKPDCLVADTFFP---WATDAAAKFGIPRLV 173 (518)
Q Consensus 140 ~~ll~~-~~pDlVI~D~~~~---~~~~iA~~lgiP~v~ 173 (518)
+.+++. .+-++.+.|.-+. .+..+|...|||++.
T Consensus 141 ~~~m~~Lk~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 141 EKLMEALKERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHHCCeEEEcccccccchhhhhHhhcCCceee
Confidence 334443 3579999998776 368899999999886
No 279
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=42.63 E-value=1.4e+02 Score=30.25 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCC-CeEEEEeCC
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRG-VKASVITTP 72 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rG-H~Vt~~~~~ 72 (518)
|++|+++=.+..| ..+|..|+++| ++|+++.-.
T Consensus 1 m~~ilviGaG~Vg-----~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 1 MMKILVIGAGGVG-----SVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CCcEEEECCchhH-----HHHHHHHHhCCCceEEEEeCC
Confidence 5688887666555 46899999999 999999875
No 280
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=42.43 E-value=47 Score=28.93 Aligned_cols=39 Identities=10% Similarity=0.332 Sum_probs=32.7
Q ss_pred CcEEE-EEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 35 QLHVF-FFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 35 ~~kIl-~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
||+|+ |+-+-..|-..-+-+|.+.|.+||+.|..+=+..
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 46666 6666788999999999999999999999887653
No 281
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=42.30 E-value=41 Score=29.02 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=35.4
Q ss_pred CCCcEEEEEcCCCccChHH-HHHHHHHHHhC--CCeEEEEeCCCCccchh
Q 010093 33 IPQLHVFFFPFMAHGHMIP-IVDMAKLFATR--GVKASVITTPANAPYVS 79 (518)
Q Consensus 33 ~~~~kIl~~~~~~~GH~~p-~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~ 79 (518)
++.+||+..-.++ ||..+ ...+.++|.++ +|+|+.+.+...+..++
T Consensus 6 ~~~~rIaWgITGa-G~~L~Et~~imk~lk~~~~~~~v~v~lSkageeVvk 54 (187)
T COG1036 6 KKKKRIAWGITGA-GHLLPETYQIMKELKKEYGDVEVDVFLSKAGEEVVK 54 (187)
T ss_pred cccceEEEEEecc-ccccHHHHHHHHHHHhhcCCceEEEeehhhHHHHHH
Confidence 4557787766555 88777 88999999998 89999998877665543
No 282
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=41.70 E-value=1.2e+02 Score=31.12 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=24.5
Q ss_pred HHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEE
Q 010093 140 EQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVF 174 (518)
Q Consensus 140 ~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~ 174 (518)
.+.+++.+||+||..... ..+|+++|||++.+
T Consensus 351 ~~~~~~~~pdliig~s~~---~~~a~~lgip~~~~ 382 (415)
T cd01977 351 FEILEMLKPDIILTGPRV---GELVKKLHVPYVNI 382 (415)
T ss_pred HHHHHhcCCCEEEecCcc---chhhhhcCCCEEec
Confidence 344566789999988543 35899999999875
No 283
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=41.47 E-value=1.3e+02 Score=31.07 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=21.2
Q ss_pred CcccccccCch------hHHHHHHhCCceecC
Q 010093 396 VGGFVTHCGWN------STLEAVAAGVPLVTW 421 (518)
Q Consensus 396 ~~~~ItHgG~~------s~~eal~~GvP~l~~ 421 (518)
..++++|.|-| .+.+|.+.++|+|++
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 44488887754 778999999999998
No 284
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=41.21 E-value=1.7e+02 Score=29.81 Aligned_cols=34 Identities=41% Similarity=0.451 Sum_probs=26.5
Q ss_pred HHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEE
Q 010093 138 PLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVF 174 (518)
Q Consensus 138 ~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~ 174 (518)
++.+.++..+||++|.... ...+|+++|+|++.+
T Consensus 347 e~~~~i~~~~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 347 ELKKLLKEKKADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHhhcCCCEEEECCc---chhhHHhcCCCEEEc
Confidence 5556677789999999943 356899999999854
No 285
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=40.97 E-value=57 Score=34.47 Aligned_cols=45 Identities=9% Similarity=0.109 Sum_probs=36.9
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhh
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSK 80 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~ 80 (518)
.-+++.-.++.|-..-+..++.+.+.+|..|.+++.+...+.+..
T Consensus 274 ~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~ 318 (509)
T PRK09302 274 SIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIR 318 (509)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHH
Confidence 356677777999999999999999999999999999876555433
No 286
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.68 E-value=1.7e+02 Score=29.53 Aligned_cols=43 Identities=14% Similarity=0.257 Sum_probs=35.9
Q ss_pred cEE-EEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 010093 36 LHV-FFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYV 78 (518)
Q Consensus 36 ~kI-l~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 78 (518)
..| +|+-.-+.|-..-+..+|..+.++|+.|-+++.+.|..-.
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagA 144 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGA 144 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccch
Confidence 444 4666669999999999999999999999999998876543
No 287
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=40.64 E-value=44 Score=27.42 Aligned_cols=37 Identities=11% Similarity=0.031 Sum_probs=33.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
||++.+.++-.|..-..-++.-|...|++|.+.....
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~v 37 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQ 37 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCC
Confidence 6889999999999999999999999999999998754
No 288
>cd08783 Death_MALT1 Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1. Death domain (DD) similar to that found in Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1). Malt1, together with Bcl10 (B-cell lymphoma 10), are the integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins
Probab=40.47 E-value=88 Score=24.33 Aligned_cols=67 Identities=19% Similarity=0.172 Sum_probs=44.2
Q ss_pred cccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 010093 425 AEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLS 504 (518)
Q Consensus 425 ~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~ 504 (518)
.|+-.|..-. |.+|.+.+. ..++.++..+..++++.+ .+=++.|=+.+. +.|++ +.
T Consensus 20 ~~~~gWr~LA-e~lg~~~~f-----------r~S~~el~~cslkvl~p~-----gSPsk~LL~~~~---~rg~T----v~ 75 (97)
T cd08783 20 ADGKGWRKLA-ELAGSRGRF-----------RLSCLDLEQCSLKVLEPE-----GSPSRSLLKLLG---ERGCT----VT 75 (97)
T ss_pred CccCCHHHHH-HHHccCCcc-----------ccCHHHHHHHHHHHhcCC-----CCchHHHHHHHH---HcCCc----HH
Confidence 3455666666 788888844 578999999999999811 122445555555 66777 45
Q ss_pred HHHHHHHhhhc
Q 010093 505 ALIEELRLSRH 515 (518)
Q Consensus 505 ~~~~~~~~~~~ 515 (518)
++++.++.-.|
T Consensus 76 ~Ll~~L~~Mgh 86 (97)
T cd08783 76 ELSEFLQAMEH 86 (97)
T ss_pred HHHHHHHHhhh
Confidence 66666665444
No 289
>PLN00016 RNA-binding protein; Provisional
Probab=40.14 E-value=35 Score=34.36 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=27.2
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
+++|+++..-+.|+=.--..|++.|.++||+|+.++-.
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 46788873333334444567899999999999998864
No 290
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=39.83 E-value=59 Score=29.13 Aligned_cols=43 Identities=30% Similarity=0.560 Sum_probs=30.0
Q ss_pred HHHHHHHHhhCCCC--EEEecCCCc-cHHHHHHHcCCCeEEEecch
Q 010093 136 QEPLEQLLQEHKPD--CLVADTFFP-WATDAAAKFGIPRLVFHGTS 178 (518)
Q Consensus 136 ~~~l~~ll~~~~pD--lVI~D~~~~-~~~~iA~~lgiP~v~~~~~~ 178 (518)
...+.+++++..++ ++|...+.- .+..+|+++|+|.|.+.++.
T Consensus 46 ~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav 91 (187)
T PF05728_consen 46 IAQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAV 91 (187)
T ss_pred HHHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCC
Confidence 34566677765544 555555444 68889999999999987753
No 291
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=39.82 E-value=40 Score=32.97 Aligned_cols=35 Identities=11% Similarity=0.043 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
.+|||+++=.++.| ..+|..|+++||+|+++....
T Consensus 4 ~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 45899999666655 457788999999999998864
No 292
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=39.80 E-value=22 Score=33.89 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=34.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeCCCCccch
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATR-GVKASVITTPANAPYV 78 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~r-GH~Vt~~~~~~~~~~~ 78 (518)
-+++...++.|-...+++++..++.. |+.|.|++.+.....+
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~ 74 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRT 74 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHH
Confidence 45677778999999999999999877 9999999997755443
No 293
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=39.78 E-value=24 Score=30.50 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=24.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
||.++-.+..| .++|..|.++||+|++.+.+.
T Consensus 1 KI~ViGaG~~G-----~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWG-----TALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHH-----HHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHH-----HHHHHHHHHcCCEEEEEeccH
Confidence 45555555444 479999999999999999974
No 294
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=39.68 E-value=57 Score=29.40 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=29.8
Q ss_pred cEEE-EEc-CCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 36 LHVF-FFP-FMAHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 36 ~kIl-~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
+|++ |++ -++-|-..-...||..|+++|++|.++=...
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~ 56 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDM 56 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 5644 443 5588889999999999999999998885543
No 295
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=39.67 E-value=60 Score=29.39 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=32.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 74 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 74 (518)
++||.|-..|+-|-.+.|+.=|++|.++|.+|.+..-+..
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~veth 44 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETH 44 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---T
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCC
Confidence 5899999999999999999999999999999998876543
No 296
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=39.65 E-value=44 Score=32.60 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=33.7
Q ss_pred cEEEEEc-CCCccChHHHHHHHHHHHhCCCeEEEEeCCCCcc
Q 010093 36 LHVFFFP-FMAHGHMIPIVDMAKLFATRGVKASVITTPANAP 76 (518)
Q Consensus 36 ~kIl~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 76 (518)
||++|+. -|+-|-..-..++|-.++++|++|.+++++..++
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 4666665 5699999999999999999999999999987765
No 297
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=39.63 E-value=65 Score=25.48 Aligned_cols=38 Identities=8% Similarity=0.133 Sum_probs=31.5
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
|+||+++|..+.|--.-....=+....+|-++++-..+
T Consensus 1 Mk~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~s 38 (102)
T COG1440 1 MKKILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEAYS 38 (102)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEEec
Confidence 56999999999998888888888888888888766554
No 298
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=39.16 E-value=66 Score=28.06 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=32.3
Q ss_pred HHHHHHHHhhCCCCEEEecCCCc---cHHHHHHHcCCCeEEEecc
Q 010093 136 QEPLEQLLQEHKPDCLVADTFFP---WATDAAAKFGIPRLVFHGT 177 (518)
Q Consensus 136 ~~~l~~ll~~~~pDlVI~D~~~~---~~~~iA~~lgiP~v~~~~~ 177 (518)
.+.+.+++++.+||+|++..... .+..+|.++|.|++.-...
T Consensus 72 a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~~ 116 (168)
T cd01715 72 APALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLISDVTA 116 (168)
T ss_pred HHHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCceeeEEE
Confidence 44566677777899999886444 6899999999999885543
No 299
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=38.95 E-value=70 Score=26.62 Aligned_cols=37 Identities=16% Similarity=0.060 Sum_probs=23.9
Q ss_pred cEEE-EEcCCCccCh--HHHHHHHHHHHhCCCeE-EEEeCC
Q 010093 36 LHVF-FFPFMAHGHM--IPIVDMAKLFATRGVKA-SVITTP 72 (518)
Q Consensus 36 ~kIl-~~~~~~~GH~--~p~l~LA~~L~~rGH~V-t~~~~~ 72 (518)
||++ ++..+.+|+- .-.+.+|+.+.++||+| +++-..
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~ 41 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQ 41 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEeh
Confidence 4554 3444445554 45777899999999994 555443
No 300
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=38.91 E-value=38 Score=34.75 Aligned_cols=36 Identities=28% Similarity=0.365 Sum_probs=28.8
Q ss_pred HHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEe
Q 010093 137 EPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFH 175 (518)
Q Consensus 137 ~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~ 175 (518)
.++.+++++.+||++|.... ...+|+++|||++.+.
T Consensus 359 ~e~~~~i~~~~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 359 YELEEFVKRLKPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHHhCCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 45667777889999999864 5668999999997654
No 301
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=38.77 E-value=33 Score=30.34 Aligned_cols=42 Identities=17% Similarity=0.164 Sum_probs=31.7
Q ss_pred EEEEEcCCCccChHH-HHHHHHHHHh-CCCeEEEEeCCCCccchh
Q 010093 37 HVFFFPFMAHGHMIP-IVDMAKLFAT-RGVKASVITTPANAPYVS 79 (518)
Q Consensus 37 kIl~~~~~~~GH~~p-~l~LA~~L~~-rGH~Vt~~~~~~~~~~~~ 79 (518)
||++.-.++ ||... ...+.++|.+ +||+|.++.++.....++
T Consensus 1 ~i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 1 RIAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred CEEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 455555555 77766 8899999985 599999999987765444
No 302
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=38.71 E-value=29 Score=30.76 Aligned_cols=42 Identities=12% Similarity=0.235 Sum_probs=32.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchh
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVS 79 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 79 (518)
||++...++.| ..-...+.+.|.++|++|.++.++.....+.
T Consensus 2 ~I~lgvtGs~~-a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGSIA-AYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 67777777644 4466699999999999999999986555443
No 303
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=37.75 E-value=1.6e+02 Score=31.62 Aligned_cols=91 Identities=14% Similarity=0.050 Sum_probs=49.7
Q ss_pred cCCcccCCH-HHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCc-cHHHhh-------
Q 010093 321 FGSLANFTS-AQLMEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWA-PQVLIL------- 391 (518)
Q Consensus 321 lGS~~~~~~-~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~-pq~~lL------- 391 (518)
.||...... ..-+.+++.|++.|.+.+.-+++.. .+| -+....+.+++.++.-. -+...+
T Consensus 4 ~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~----------~~~-l~dal~~~~~i~~i~~~hE~~A~~~Adgyar 72 (564)
T PRK08155 4 SGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGGA----------ILP-LYDALSQSTQIRHILARHEQGAGFIAQGMAR 72 (564)
T ss_pred CCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCcc----------cHH-HHHHHhccCCceEEEeccHHHHHHHHHHHHH
Confidence 344443222 3355678888888888888877654 122 11111112234332211 111111
Q ss_pred ccCCCcccccccCch------hHHHHHHhCCceecCC
Q 010093 392 DHEAVGGFVTHCGWN------STLEAVAAGVPLVTWP 422 (518)
Q Consensus 392 ~~~~~~~~ItHgG~~------s~~eal~~GvP~l~~P 422 (518)
.+....++++|.|-| .+.+|-..++|+|++.
T Consensus 73 ~tg~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 73 TTGKPAVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred HcCCCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 112344488887754 7899999999999874
No 304
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=37.66 E-value=66 Score=29.05 Aligned_cols=44 Identities=11% Similarity=-0.070 Sum_probs=38.2
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYV 78 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 78 (518)
.-||++.+.++--|-....-++.-|..+|++|+++...--.+.+
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~ 127 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTV 127 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHH
Confidence 46899999999999999999999999999999999876544443
No 305
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=37.57 E-value=2.5e+02 Score=26.44 Aligned_cols=38 Identities=26% Similarity=0.269 Sum_probs=29.1
Q ss_pred HHHHHHhhCCCCEEEecCCCc----cHHHHHHHcCCCeEEEe
Q 010093 138 PLEQLLQEHKPDCLVADTFFP----WATDAAAKFGIPRLVFH 175 (518)
Q Consensus 138 ~l~~ll~~~~pDlVI~D~~~~----~~~~iA~~lgiP~v~~~ 175 (518)
.-..+++..+.|+||+-...- .=..+|..+|||++.+.
T Consensus 185 ~n~al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~ 226 (249)
T PF02571_consen 185 LNRALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVIK 226 (249)
T ss_pred HHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEe
Confidence 445678889999999764322 34789999999999863
No 306
>PRK00784 cobyric acid synthase; Provisional
Probab=37.56 E-value=3.3e+02 Score=28.57 Aligned_cols=35 Identities=11% Similarity=0.259 Sum_probs=28.1
Q ss_pred EEEEEcC-CCccChHHHHHHHHHHHhCCCeEEEEeC
Q 010093 37 HVFFFPF-MAHGHMIPIVDMAKLFATRGVKASVITT 71 (518)
Q Consensus 37 kIl~~~~-~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 71 (518)
.|++... ..-|-..-...|++.|+++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 4665544 4689999999999999999999986644
No 307
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=37.43 E-value=53 Score=33.80 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=29.3
Q ss_pred HHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEe
Q 010093 137 EPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFH 175 (518)
Q Consensus 137 ~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~ 175 (518)
.++.+++++.+||++|.+.. ...+|+++|||++.+.
T Consensus 362 ~e~~~~l~~~~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 362 FDIESYAKELKIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred HHHHHHHHhcCCCEEEECch---hHHHHHHcCCCEEEec
Confidence 56677777889999999964 5689999999998754
No 308
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=37.35 E-value=48 Score=34.44 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=34.0
Q ss_pred CCcEEEEEcCCCccChHH------------HHHHHHHHHhCCCeEEEEeCCC
Q 010093 34 PQLHVFFFPFMAHGHMIP------------IVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p------------~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
+..||++...|++=.+.| -..||+++..+|++||+++.+.
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 346899999999888777 4689999999999999999763
No 309
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=37.30 E-value=58 Score=31.48 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=33.7
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
|||+|+-=|+-|-..-...||..|+++|+.|.++=-+.
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~Dp 38 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDP 38 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 57899999999999999999999999999998885543
No 310
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=37.26 E-value=85 Score=30.93 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=31.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 38 VFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 38 Il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
|.=++.++.|-.-....|++.|.++|++|.+++-.+
T Consensus 40 VGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGY 75 (326)
T PF02606_consen 40 VGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGY 75 (326)
T ss_pred EcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCC
Confidence 334557899999999999999999999999999865
No 311
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=37.24 E-value=76 Score=25.38 Aligned_cols=37 Identities=11% Similarity=0.142 Sum_probs=29.7
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 70 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 70 (518)
+|.||+++|..+.|--.-.-.+-++..+.|.++.+-.
T Consensus 2 ~~kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A 38 (106)
T PRK10499 2 EKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEA 38 (106)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEE
Confidence 3569999999999988877788777788898877644
No 312
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=36.91 E-value=57 Score=28.84 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=23.7
Q ss_pred HHhhCCCCEEEecCCCcc--HHHHHHHcCCCeEEEe
Q 010093 142 LLQEHKPDCLVADTFFPW--ATDAAAKFGIPRLVFH 175 (518)
Q Consensus 142 ll~~~~pDlVI~D~~~~~--~~~iA~~lgiP~v~~~ 175 (518)
.+.+.+||+||+...... ....-+..|||++.+.
T Consensus 64 ~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 64 LIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred HHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 344589999998654432 4445578999998864
No 313
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=36.84 E-value=26 Score=35.15 Aligned_cols=116 Identities=12% Similarity=0.159 Sum_probs=63.3
Q ss_pred CCCcEeec-CccHHHhhccCCCcccccccCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeecccccccccc
Q 010093 376 GKGLIIRG-WAPQVLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVG 454 (518)
Q Consensus 376 ~~nv~~~~-~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~ 454 (518)
.+|++..+ ..+-.++|..+++ +||=- .+.+.|.++.++|++....-.|..... -|...+...+. -..
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~--------rg~~~~~~~~~-pg~ 318 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKE--------RGFYFDYEEDL-PGP 318 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTT--------SSBSS-TTTSS-SS-
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhc--------cCCCCchHhhC-CCc
Confidence 45766643 3457889978555 99986 558899999999999876655554221 12222221000 001
Q ss_pred CccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 010093 455 DFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEEL 510 (518)
Q Consensus 455 ~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 510 (518)
...+.++|.++|..++.+ +..++++-++..+++-. -.+|.+ ++++++.+
T Consensus 319 ~~~~~~eL~~~i~~~~~~--~~~~~~~~~~~~~~~~~--~~Dg~s---~eri~~~I 367 (369)
T PF04464_consen 319 IVYNFEELIEAIENIIEN--PDEYKEKREKFRDKFFK--YNDGNS---SERIVNYI 367 (369)
T ss_dssp EESSHHHHHHHHTTHHHH--HHHTHHHHHHHHHHHST--T--S-H---HHHHHHHH
T ss_pred eeCCHHHHHHHHHhhhhC--CHHHHHHHHHHHHHhCC--CCCchH---HHHHHHHH
Confidence 134789999999999872 23455666666666642 334443 35666554
No 314
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=36.76 E-value=54 Score=33.71 Aligned_cols=37 Identities=27% Similarity=0.299 Sum_probs=28.8
Q ss_pred HHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEec
Q 010093 137 EPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFHG 176 (518)
Q Consensus 137 ~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~ 176 (518)
.++.+++++.+||+||.+.. ...+|+++|+|++.++.
T Consensus 361 ~el~~~i~~~~pdliig~~~---~~~~a~~~~ip~i~~~~ 397 (428)
T cd01965 361 WDLESLAKEEPVDLLIGNSH---GRYLARDLGIPLVRVGF 397 (428)
T ss_pred HHHHHHhhccCCCEEEECch---hHHHHHhcCCCEEEecC
Confidence 45566677788999999963 46789999999987544
No 315
>PRK07004 replicative DNA helicase; Provisional
Probab=36.61 E-value=2.8e+02 Score=28.89 Aligned_cols=41 Identities=10% Similarity=0.134 Sum_probs=33.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCCCCccch
Q 010093 38 VFFFPFMAHGHMIPIVDMAKLFA-TRGVKASVITTPANAPYV 78 (518)
Q Consensus 38 Il~~~~~~~GH~~p~l~LA~~L~-~rGH~Vt~~~~~~~~~~~ 78 (518)
|++..-|+.|-...++.+|..++ +.|+.|.|++-+-....+
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql 257 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQL 257 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHH
Confidence 66777889999999999999886 469999999988655443
No 316
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=36.48 E-value=41 Score=29.19 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 71 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 71 (518)
|+||.|+=.+..| .++|+.|.++||+|+..-.
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d~ 32 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAKAGYEVTVYDR 32 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEES
T ss_pred CCEEEEEchHHHH-----HHHHHHHHhcCCeEEeecc
Confidence 5788888776544 6899999999999988753
No 317
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=36.45 E-value=86 Score=33.57 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=21.9
Q ss_pred CcccccccCch------hHHHHHHhCCceecCC
Q 010093 396 VGGFVTHCGWN------STLEAVAAGVPLVTWP 422 (518)
Q Consensus 396 ~~~~ItHgG~~------s~~eal~~GvP~l~~P 422 (518)
..++++|.|-| .+.+|...++|||++.
T Consensus 67 ~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~ 99 (563)
T PRK08527 67 VGVAIVTSGPGFTNAVTGLATAYMDSIPLVLIS 99 (563)
T ss_pred CEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 44588888854 7899999999999874
No 318
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=36.40 E-value=56 Score=30.97 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=32.3
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
|.|.++-=++-|-..-...||..|+++|++|.++=-+
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 5688888889999999999999999999999888443
No 319
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=36.40 E-value=2.7e+02 Score=26.28 Aligned_cols=44 Identities=16% Similarity=0.081 Sum_probs=36.2
Q ss_pred CCcEEEEEc-CCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccc
Q 010093 34 PQLHVFFFP-FMAHGHMIPIVDMAKLFATRGVKASVITTPANAPY 77 (518)
Q Consensus 34 ~~~kIl~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~ 77 (518)
+..|-.|+- -++.|-..-...||-.|+.-+|.|.++++++.+..
T Consensus 17 ~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNl 61 (323)
T KOG2825|consen 17 TSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNL 61 (323)
T ss_pred ceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccch
Confidence 456755554 45888889999999999999999999999887764
No 320
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=36.07 E-value=2.8e+02 Score=27.45 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEEeCC
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGV-KASVITTP 72 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH-~Vt~~~~~ 72 (518)
..||+++=.++.| ..+|+.|+..|+ +++++=..
T Consensus 24 ~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 24 EKHVLIVGAGALG-----AANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred CCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcCC
Confidence 4689999887766 788999999998 56666443
No 321
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=36.07 E-value=1e+02 Score=26.97 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=25.3
Q ss_pred cEEE-EEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 010093 36 LHVF-FFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 36 ~kIl-~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
|||+ +-|+-+.||-.-.-.|++.+ -|++++++=|
T Consensus 1 M~ILlle~y~ggSHk~~~~~L~~~~---~~~~~lltLP 35 (168)
T PF12038_consen 1 MRILLLEPYYGGSHKQWADGLAAHS---EHEWTLLTLP 35 (168)
T ss_pred CeEEEEccccccCHHHHHHHHHHhc---cCCEEEEEcC
Confidence 5777 55577999988777777777 4788877765
No 322
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=36.06 E-value=55 Score=33.70 Aligned_cols=38 Identities=11% Similarity=0.322 Sum_probs=29.0
Q ss_pred HHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEecc
Q 010093 137 EPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFHGT 177 (518)
Q Consensus 137 ~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~ 177 (518)
.++.+++++.+||++|.+. ....+|.++|+|++.++..
T Consensus 360 ~e~~~~i~~~~pdliig~~---~~~~~a~~~gip~~~~~~p 397 (430)
T cd01981 360 TEVGDMIARTEPELIFGTQ---MERHIGKRLDIPCAVISAP 397 (430)
T ss_pred HHHHHHHHhhCCCEEEecc---hhhHHHHHcCCCEEEEeCC
Confidence 3466677778999999996 3445789999999887553
No 323
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=35.88 E-value=3.8e+02 Score=26.09 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=22.9
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 71 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 71 (518)
|||+|+-.+ .......+.|.++||+|..+.+
T Consensus 1 mkIvf~G~~-----~~a~~~L~~L~~~~~~i~~Vvt 31 (309)
T PRK00005 1 MRIVFMGTP-----EFAVPSLKALLESGHEVVAVVT 31 (309)
T ss_pred CEEEEECCC-----HHHHHHHHHHHHCCCcEEEEEC
Confidence 588887433 3567788899888999886655
No 324
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=35.50 E-value=1e+02 Score=27.39 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=28.7
Q ss_pred HHHHHHhhCCCCEEEecC--CCccHHHHHHHcCCCeEEEe
Q 010093 138 PLEQLLQEHKPDCLVADT--FFPWATDAAAKFGIPRLVFH 175 (518)
Q Consensus 138 ~l~~ll~~~~pDlVI~D~--~~~~~~~iA~~lgiP~v~~~ 175 (518)
.+.+..+..++|.|++=. -+..+..+|.++|+|+|.+-
T Consensus 44 ~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vR 83 (179)
T COG0503 44 ELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPVR 83 (179)
T ss_pred HHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEEEE
Confidence 555556667899999653 33378899999999999853
No 325
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=35.40 E-value=61 Score=30.74 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=30.9
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 70 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 70 (518)
|+|.++-=|+-|-..-...||..|+++|++|.++=
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD 35 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIG 35 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 56888877888999999999999999999999883
No 326
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=35.11 E-value=33 Score=32.17 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=20.9
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 47 GHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 47 GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
|=-.-...|+++|+++||+|++++|..
T Consensus 17 GLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 17 GLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred cHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 344557789999999999999999965
No 327
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=34.97 E-value=61 Score=34.34 Aligned_cols=37 Identities=22% Similarity=0.417 Sum_probs=28.6
Q ss_pred HHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEec
Q 010093 137 EPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFHG 176 (518)
Q Consensus 137 ~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~ 176 (518)
.++.+.+++.+||+||.+. ....+|.++|||++.++.
T Consensus 352 ~el~~~i~~~~PdliiG~~---~er~~a~~lgiP~~~i~~ 388 (519)
T PRK02910 352 LEVEDAIAEAAPELVLGTQ---MERHSAKRLGIPCAVISA 388 (519)
T ss_pred HHHHHHHHhcCCCEEEEcc---hHHHHHHHcCCCEEEecc
Confidence 3566667778999999875 456689999999987653
No 328
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=34.77 E-value=61 Score=34.23 Aligned_cols=37 Identities=11% Similarity=0.284 Sum_probs=28.9
Q ss_pred HHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEec
Q 010093 137 EPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFHG 176 (518)
Q Consensus 137 ~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~ 176 (518)
.++.+.+++.+||+||.+. ....+|+++|||++.++.
T Consensus 364 ~ei~~~I~~~~pdliiGs~---~er~ia~~lgiP~~~is~ 400 (513)
T CHL00076 364 TEVGDMIARVEPSAIFGTQ---MERHIGKRLDIPCGVISA 400 (513)
T ss_pred HHHHHHHHhcCCCEEEECc---hhhHHHHHhCCCEEEeec
Confidence 4556677778999999996 455568999999988653
No 329
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=34.72 E-value=58 Score=34.38 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=26.9
Q ss_pred HHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEec
Q 010093 138 PLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFHG 176 (518)
Q Consensus 138 ~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~ 176 (518)
++++++.+.+||++|.+. .+..+|+++|||++.+..
T Consensus 428 ~l~~~l~~~~~DlliG~s---~~k~~a~~~giPlir~gf 463 (515)
T TIGR01286 428 HLRSLVFTEPVDFLIGNS---YGKYIQRDTLVPLIRIGF 463 (515)
T ss_pred HHHHHHhhcCCCEEEECc---hHHHHHHHcCCCEEEecC
Confidence 344555567899999885 356789999999988643
No 330
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=34.50 E-value=68 Score=28.96 Aligned_cols=38 Identities=16% Similarity=0.322 Sum_probs=29.1
Q ss_pred CcEEEEEcCCCccChHHHHH-HHHHHHh-CCCeEEEEeCC
Q 010093 35 QLHVFFFPFMAHGHMIPIVD-MAKLFAT-RGVKASVITTP 72 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~-LA~~L~~-rGH~Vt~~~~~ 72 (518)
||||+++-+...||..-+.. +++.+.+ .|++|.++.-+
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 46888777777899998776 5666666 89999888754
No 331
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.47 E-value=56 Score=31.85 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=38.1
Q ss_pred CcccccccCchhHHHHHHh----CCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhc
Q 010093 396 VGGFVTHCGWNSTLEAVAA----GVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMV 471 (518)
Q Consensus 396 ~~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~ 471 (518)
++++|+=||-||+..|... ++|++++.. .++ |--. +..++++.+++.++++
T Consensus 73 ~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~--------G~l------GFL~-----------~~~~~~~~~~l~~i~~ 127 (306)
T PRK03372 73 CELVLVLGGDGTILRAAELARAADVPVLGVNL--------GHV------GFLA-----------EAEAEDLDEAVERVVD 127 (306)
T ss_pred CCEEEEEcCCHHHHHHHHHhccCCCcEEEEec--------CCC------ceec-----------cCCHHHHHHHHHHHHc
Confidence 5569999999999999764 778887764 111 2222 4567788888888886
Q ss_pred CCh
Q 010093 472 GDR 474 (518)
Q Consensus 472 ~~~ 474 (518)
|++
T Consensus 128 g~y 130 (306)
T PRK03372 128 RDY 130 (306)
T ss_pred CCc
Confidence 443
No 332
>PRK04328 hypothetical protein; Provisional
Probab=34.45 E-value=3.9e+02 Score=24.99 Aligned_cols=43 Identities=12% Similarity=-0.086 Sum_probs=34.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchh
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVS 79 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 79 (518)
-+++.-.|+.|-....++++.+-+++|+.+.+++.+...+.+.
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~ 67 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVR 67 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHH
Confidence 5667777799999999998888778899999999987665443
No 333
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=34.38 E-value=61 Score=34.26 Aligned_cols=36 Identities=14% Similarity=0.303 Sum_probs=28.8
Q ss_pred HHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEec
Q 010093 138 PLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFHG 176 (518)
Q Consensus 138 ~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~ 176 (518)
++.+.+++.+||+||.+. ....+|.++|||++.++.
T Consensus 355 ei~~~i~~~~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 355 EVADAIAALEPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHHhcCCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 556667778999999995 466689999999987654
No 334
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=34.07 E-value=1e+02 Score=27.66 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=28.5
Q ss_pred HHHHHHHhhCCCCEEEecC-C-CccHHHHHHHcCCCeEEEec
Q 010093 137 EPLEQLLQEHKPDCLVADT-F-FPWATDAAAKFGIPRLVFHG 176 (518)
Q Consensus 137 ~~l~~ll~~~~pDlVI~D~-~-~~~~~~iA~~lgiP~v~~~~ 176 (518)
..+.+.+...++|+|++=. - .+.+..+|..+|+|++.+.-
T Consensus 40 ~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK 81 (189)
T PRK09219 40 KEFARRFKDEGITKILTIEASGIAPAVMAALALGVPVVFAKK 81 (189)
T ss_pred HHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 3444444556899999543 2 33788999999999998654
No 335
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.02 E-value=84 Score=28.84 Aligned_cols=36 Identities=14% Similarity=-0.102 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
++++|++. ++.|+ --..|++.|.++||+|++++...
T Consensus 5 ~~~~vlIt--Gasg~--iG~~l~~~l~~~g~~v~~~~~~~ 40 (249)
T PRK12825 5 MGRVALVT--GAARG--LGRAIALRLARAGADVVVHYRSD 40 (249)
T ss_pred CCCEEEEe--CCCch--HHHHHHHHHHHCCCeEEEEeCCC
Confidence 44566653 33444 45788999999999997766543
No 336
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=34.00 E-value=48 Score=28.76 Aligned_cols=41 Identities=24% Similarity=0.325 Sum_probs=30.4
Q ss_pred HHHHHHHHhhCCCCEEEecCCCc---cHHHHHHHcCCCeEEEec
Q 010093 136 QEPLEQLLQEHKPDCLVADTFFP---WATDAAAKFGIPRLVFHG 176 (518)
Q Consensus 136 ~~~l~~ll~~~~pDlVI~D~~~~---~~~~iA~~lgiP~v~~~~ 176 (518)
.+.+.+++++.+||+|++..... .+..+|.++|.|++.-..
T Consensus 79 a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 79 ADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp HHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 44667777778999999886554 578999999999988444
No 337
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=33.98 E-value=3.4e+02 Score=27.93 Aligned_cols=41 Identities=12% Similarity=0.210 Sum_probs=34.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCCCCccc
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFA-TRGVKASVITTPANAPY 77 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~-~rGH~Vt~~~~~~~~~~ 77 (518)
-|+|+-.++-|-..-...||..|. ++|..|.++..+.+...
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 355666779999999999999997 58999999999876654
No 338
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=33.83 E-value=3.4e+02 Score=27.82 Aligned_cols=45 Identities=16% Similarity=0.309 Sum_probs=37.9
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYV 78 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 78 (518)
+...|+++-.=+.|-...+..||+-|.++|+.|-+++.+-+.+-.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA 143 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAA 143 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHH
Confidence 445567777779999999999999999999999999998776543
No 339
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=33.70 E-value=77 Score=25.29 Aligned_cols=36 Identities=6% Similarity=0.014 Sum_probs=27.0
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 71 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 71 (518)
.||+++|..+.|--.-...+-+.+.++|.++.+-..
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~ 37 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAI 37 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEe
Confidence 489999988877777777776667778888766544
No 340
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=33.59 E-value=67 Score=29.24 Aligned_cols=35 Identities=11% Similarity=0.071 Sum_probs=25.0
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 74 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 74 (518)
||++++.=. |+ --..||+.|+..||+|++.+...-
T Consensus 1 m~~~~i~Gt---Gn--iG~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 1 MMIIAIIGT---GN--IGSALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred CcEEEEecc---Ch--HHHHHHHHHHhCCCeEEEecCCCh
Confidence 455655433 33 346899999999999999977543
No 341
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=33.49 E-value=2.4e+02 Score=27.36 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=33.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 74 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 74 (518)
+..|+|.-.++.|-...+..|+..|.++|+.|.++..+..
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3445566667999999999999999999999999887643
No 342
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=33.30 E-value=42 Score=34.11 Aligned_cols=46 Identities=11% Similarity=0.137 Sum_probs=36.6
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhh
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSK 80 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~ 80 (518)
++.||++...++. ...-...+.+.|.++|++|.++.++.....+..
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhH
Confidence 4568988887765 455778999999999999999999876665543
No 343
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=33.30 E-value=1.9e+02 Score=28.13 Aligned_cols=131 Identities=12% Similarity=0.039 Sum_probs=72.7
Q ss_pred cEEE-EecCCcc--cCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecC--ccH-H
Q 010093 315 SVVY-VCFGSLA--NFTSAQLMEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGW--APQ-V 388 (518)
Q Consensus 315 ~vIy-vslGS~~--~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~--~pq-~ 388 (518)
+.|. +..||.. ..+.+.+.++++.+.+.+.++++..+... +. + .-+.... ..+++.+.+- +.+ .
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~---e~-~----~~~~i~~--~~~~~~l~g~~sL~ela 248 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEH---EE-Q----RAKRLAE--GFPYVEVLPKLSLEQVA 248 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHH---HH-H----HHHHHHc--cCCcceecCCCCHHHHH
Confidence 3444 4444433 27889999999999877777765444322 00 0 1111111 1123333332 344 5
Q ss_pred HhhccCCCcccccccCchhHHHHHHhCCceecCCcccccc------hhHHHHHHhhhcceeeccccccccccCccChHHH
Q 010093 389 LILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQF------YNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETI 462 (518)
Q Consensus 389 ~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~------~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l 462 (518)
.++.+++ ++|+. -.|.+.=|.+.|+|+|++=--.|-. .|...+ +-- +. -.. .+++|.+
T Consensus 249 ali~~a~--l~I~n-DSGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~-~~~--~~--cm~--------~I~~e~V 312 (322)
T PRK10964 249 RVLAGAK--AVVSV-DTGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHAC-RSP--GK--SMA--------DLSAETV 312 (322)
T ss_pred HHHHhCC--EEEec-CCcHHHHHHHhCCCEEEEECCCCcccccCCCCCceee-cCC--Cc--ccc--------cCCHHHH
Confidence 5787744 49987 5678999999999998853211111 111111 000 00 122 6899999
Q ss_pred HHHHHHHhc
Q 010093 463 EKAVNEIMV 471 (518)
Q Consensus 463 ~~av~~ll~ 471 (518)
.++++++|+
T Consensus 313 ~~~~~~~l~ 321 (322)
T PRK10964 313 FQKLETLIS 321 (322)
T ss_pred HHHHHHHhh
Confidence 999998873
No 344
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=33.11 E-value=69 Score=33.01 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=29.0
Q ss_pred HHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEec
Q 010093 137 EPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFHG 176 (518)
Q Consensus 137 ~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~ 176 (518)
.++.+++++.++|++|... ....+|+++|||++.+..
T Consensus 363 ~~l~~~i~~~~~dliig~s---~~k~~A~~l~ip~ir~g~ 399 (432)
T TIGR01285 363 EDLEDLACAAGADLLITNS---HGRALAQRLALPLVRAGF 399 (432)
T ss_pred HHHHHHHhhcCCCEEEECc---chHHHHHHcCCCEEEecC
Confidence 4667777778999999885 346799999999987543
No 345
>COG0409 HypD Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=32.90 E-value=1.6e+02 Score=28.73 Aligned_cols=58 Identities=22% Similarity=0.208 Sum_probs=34.4
Q ss_pred HhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 010093 436 EILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEEL 510 (518)
Q Consensus 436 e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 510 (518)
++.++-..+. .|.+.+|..+|.-+|. ...+...++-...+.+|+..|...+ .++|+.+
T Consensus 210 ~ky~~P~VVa----------GFEP~DiL~~i~~ll~-----q~~~g~akv~NeY~RaV~~eGN~~A--q~~i~~v 267 (364)
T COG0409 210 EKYKFPIVVA----------GFEPLDILLGVLMLLK-----QIIRGEAKVENEYKRAVKDEGNVKA--QELINEV 267 (364)
T ss_pred HhcCCCeEEe----------cCCHHHHHHHHHHHHH-----HHhcCceEEEecceeecCCCcCHHH--HHHHHHH
Confidence 4555555553 4677777777777774 3344444444455556677777655 6666554
No 346
>PRK04940 hypothetical protein; Provisional
Probab=32.75 E-value=1.1e+02 Score=27.20 Aligned_cols=31 Identities=16% Similarity=0.286 Sum_probs=25.4
Q ss_pred CCCEEEecCCCc-cHHHHHHHcCCCeEEEecc
Q 010093 147 KPDCLVADTFFP-WATDAAAKFGIPRLVFHGT 177 (518)
Q Consensus 147 ~pDlVI~D~~~~-~~~~iA~~lgiP~v~~~~~ 177 (518)
+++++|...+.- ++.-+|+++|+|.|.+.+.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 567777776555 8999999999999998775
No 347
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=32.66 E-value=85 Score=27.24 Aligned_cols=35 Identities=26% Similarity=0.174 Sum_probs=26.9
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEE
Q 010093 316 VVYVCFGSLANFTSAQLMEIATGLEASGRNFIWVV 350 (518)
Q Consensus 316 vIyvslGS~~~~~~~~~~~l~~al~~~~~~~i~~~ 350 (518)
.+|+|+||-.....+.++..+.++.+.+..-++..
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 69999999887777778888888888875434443
No 348
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=32.59 E-value=44 Score=30.90 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=19.9
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 48 HMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 48 H~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
|...|...|++|.++||+|+++..++
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 57789999999999999999998863
No 349
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=32.59 E-value=29 Score=29.03 Aligned_cols=36 Identities=11% Similarity=0.128 Sum_probs=26.7
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhh
Q 010093 45 AHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSK 80 (518)
Q Consensus 45 ~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~ 80 (518)
....+--.+-++..|.++||+|++++++.....++-
T Consensus 9 ~Pvq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~v 44 (139)
T PF09001_consen 9 VPVQTPSALYLSYKLKKKGFEVVVAGNPAALKLLEV 44 (139)
T ss_dssp STTHHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHhcCCeEEEecCHHHHhHhhh
Confidence 334556678889999999999999999875554443
No 350
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=32.49 E-value=5.8e+02 Score=27.07 Aligned_cols=44 Identities=30% Similarity=0.504 Sum_probs=35.1
Q ss_pred hHHHHHHHHhhCCCCEEE----ecCCCccHHHHHHHcCCCeEEEecch
Q 010093 135 LQEPLEQLLQEHKPDCLV----ADTFFPWATDAAAKFGIPRLVFHGTS 178 (518)
Q Consensus 135 ~~~~l~~ll~~~~pDlVI----~D~~~~~~~~iA~~lgiP~v~~~~~~ 178 (518)
....+...++...+|.+| ||-..+..+..|..+++|.|++.-.+
T Consensus 77 IAdsiE~~~~~~~~Dg~v~l~~CDK~~PG~lMaaarlniP~i~v~gGp 124 (535)
T TIGR00110 77 IADSVETMVNAHRFDGLVCIPSCDKITPGMLMAAARLNIPSIFVTGGP 124 (535)
T ss_pred HHHHHHHHHhcCCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCC
Confidence 344556667778999988 78788888889999999999987654
No 351
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=32.31 E-value=78 Score=32.65 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=27.2
Q ss_pred HHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEec
Q 010093 138 PLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFHG 176 (518)
Q Consensus 138 ~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~ 176 (518)
++.+.++..+||++|... ....+|.++|||++.+..
T Consensus 368 e~~~~i~~~~pDliiG~s---~~~~~a~~~gip~v~~~~ 403 (435)
T cd01974 368 HLRSLLFTEPVDLLIGNT---YGKYIARDTDIPLVRFGF 403 (435)
T ss_pred HHHHHHhhcCCCEEEECc---cHHHHHHHhCCCEEEeeC
Confidence 345555667899999885 357889999999987644
No 352
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=32.24 E-value=84 Score=27.75 Aligned_cols=41 Identities=27% Similarity=0.395 Sum_probs=30.8
Q ss_pred HHHHHHHHhhCCCCEEEecCCCc---cHHHHHHHcCCCeEEEec
Q 010093 136 QEPLEQLLQEHKPDCLVADTFFP---WATDAAAKFGIPRLVFHG 176 (518)
Q Consensus 136 ~~~l~~ll~~~~pDlVI~D~~~~---~~~~iA~~lgiP~v~~~~ 176 (518)
.+.+.+++++.+||+|++..... .+..+|.++|.|++.=..
T Consensus 80 a~~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv~ 123 (181)
T cd01985 80 AKALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQISDVT 123 (181)
T ss_pred HHHHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCcceeEE
Confidence 33555666667899999886444 589999999999987433
No 353
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=32.18 E-value=77 Score=30.08 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=29.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 010093 38 VFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 71 (518)
Q Consensus 38 Il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 71 (518)
|.++--|+-|-..-...||..|+++|++|.++=-
T Consensus 5 Iav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~ 38 (270)
T PRK13185 5 LAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGC 38 (270)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4566677999999999999999999999998833
No 354
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=31.79 E-value=48 Score=33.59 Aligned_cols=44 Identities=14% Similarity=0.227 Sum_probs=35.5
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchh
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVS 79 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 79 (518)
..||++...++.|= .-...+.+.|.+.|++|.++.++.....+.
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~ 46 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFIT 46 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHH
Confidence 46888887776554 558999999999999999999987666554
No 355
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=31.64 E-value=72 Score=30.32 Aligned_cols=39 Identities=10% Similarity=0.172 Sum_probs=23.6
Q ss_pred CcEEEEecCCcccCCHH-HHHHHHHHHHhC--CCcEEEEEcC
Q 010093 314 YSVVYVCFGSLANFTSA-QLMEIATGLEAS--GRNFIWVVSK 352 (518)
Q Consensus 314 ~~vIyvslGS~~~~~~~-~~~~l~~al~~~--~~~~i~~~~~ 352 (518)
|.++++||||......+ .+..+.+.++.. ++.+.|++..
T Consensus 1 KAIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS 42 (262)
T PF06180_consen 1 KAILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTS 42 (262)
T ss_dssp EEEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchH
Confidence 35888999997764443 777777777763 6788888654
No 356
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=31.47 E-value=61 Score=29.52 Aligned_cols=37 Identities=8% Similarity=0.046 Sum_probs=31.3
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
+-|++.-.|+.|-......||++|.+++|+|.-.+..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 4566777889999999999999999999999766553
No 357
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=31.43 E-value=70 Score=31.28 Aligned_cols=40 Identities=13% Similarity=-0.084 Sum_probs=30.6
Q ss_pred cEEEEEcCC---CccChHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 010093 36 LHVFFFPFM---AHGHMIPIVDMAKLFATRGVKASVITTPANA 75 (518)
Q Consensus 36 ~kIl~~~~~---~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~ 75 (518)
|||+|+.-| -.-+..-..+|..+..+|||+|.++.+....
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~ 43 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLS 43 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheE
Confidence 477777654 3344556789999999999999999997643
No 358
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=31.37 E-value=2.3e+02 Score=29.22 Aligned_cols=32 Identities=9% Similarity=0.113 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 71 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 71 (518)
+||||++-.+++.| +|+++|++.|++|.++..
T Consensus 2 ~~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 2 TMKVMLVGSGGRED-----AIARAIKRSGAILFSVIG 33 (435)
T ss_pred ceEEEEECCcHHHH-----HHHHHHHhCCCeEEEEEC
Confidence 36999987777665 678889888987766644
No 359
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=31.34 E-value=87 Score=29.67 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=31.7
Q ss_pred HHHHHHHHhhCCCCEEEec-----CCCc-cHHHHHHHcCCCeEEEec
Q 010093 136 QEPLEQLLQEHKPDCLVAD-----TFFP-WATDAAAKFGIPRLVFHG 176 (518)
Q Consensus 136 ~~~l~~ll~~~~pDlVI~D-----~~~~-~~~~iA~~lgiP~v~~~~ 176 (518)
...+.+.++..++|+|++. ..+. .+..+|+.+|+|++.+.+
T Consensus 100 a~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~ 146 (260)
T COG2086 100 AKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVS 146 (260)
T ss_pred HHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEE
Confidence 3466777888999999964 3333 689999999999998654
No 360
>PRK13604 luxD acyl transferase; Provisional
Probab=31.25 E-value=92 Score=30.34 Aligned_cols=35 Identities=9% Similarity=0.088 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVI 69 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~ 69 (518)
+.+.++++++..++-..+..+|+.|.++|+.|..+
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 44677778887777777999999999999998655
No 361
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=31.24 E-value=3e+02 Score=30.14 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=25.0
Q ss_pred HHHHHHhhCCCCEEEecCCCc-cHHHHHHHcCCCeEEEecc
Q 010093 138 PLEQLLQEHKPDCLVADTFFP-WATDAAAKFGIPRLVFHGT 177 (518)
Q Consensus 138 ~l~~ll~~~~pDlVI~D~~~~-~~~~iA~~lgiP~v~~~~~ 177 (518)
...+.+++.+||++|+-.+.. ....+-......++-++++
T Consensus 66 ~~~~~l~~~~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~s 106 (660)
T PRK08125 66 LWVERIRELAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGS 106 (660)
T ss_pred HHHHHHHhcCCCEEEEccccccCCHHHHhhcCCCEEEEeCC
Confidence 344557778999999876544 3444444455556666655
No 362
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=31.03 E-value=1.2e+02 Score=32.59 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=21.6
Q ss_pred CcccccccCc------hhHHHHHHhCCceecCC
Q 010093 396 VGGFVTHCGW------NSTLEAVAAGVPLVTWP 422 (518)
Q Consensus 396 ~~~~ItHgG~------~s~~eal~~GvP~l~~P 422 (518)
..++++|.|- +.+.+|.+.++|+|++.
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 4458888774 47899999999999873
No 363
>PRK11269 glyoxylate carboligase; Provisional
Probab=30.93 E-value=1.6e+02 Score=31.78 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=21.4
Q ss_pred CcccccccC------chhHHHHHHhCCceecCC
Q 010093 396 VGGFVTHCG------WNSTLEAVAAGVPLVTWP 422 (518)
Q Consensus 396 ~~~~ItHgG------~~s~~eal~~GvP~l~~P 422 (518)
+.++++|.| .+.+.+|...++|+|++.
T Consensus 69 ~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 69 IGVCIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred cEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 444666666 678999999999999874
No 364
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=30.88 E-value=2.3e+02 Score=27.95 Aligned_cols=97 Identities=19% Similarity=0.199 Sum_probs=58.7
Q ss_pred CCcEEEEecCCcc----cCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcC---CC-cEeecC
Q 010093 313 PYSVVYVCFGSLA----NFTSAQLMEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEG---KG-LIIRGW 384 (518)
Q Consensus 313 ~~~vIyvslGS~~----~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~---~n-v~~~~~ 384 (518)
+++.|.+.-|+.. ..+.+.+.++++.+...+.++++. ++.. +.. .-+........ .+ +-+.+-
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~-Gg~~------e~~--~~~~i~~~~~~~~~~~~~~l~g~ 249 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLF-GSAK------DHE--AGNEILAALNTEQQAWCRNLAGE 249 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEE-eCHH------hHH--HHHHHHHhcccccccceeeccCC
Confidence 4568888888742 268899999999887667776654 3322 100 11111111111 11 222232
Q ss_pred --ccH-HHhhccCCCcccccccCchhHHHHHHhCCceecC
Q 010093 385 --APQ-VLILDHEAVGGFVTHCGWNSTLEAVAAGVPLVTW 421 (518)
Q Consensus 385 --~pq-~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~ 421 (518)
+.+ ..++.+ +++||+. -.|-+.=|.+.|+|+|++
T Consensus 250 ~sL~el~ali~~--a~l~I~n-DTGp~HlAaA~g~P~val 286 (348)
T PRK10916 250 TQLEQAVILIAA--CKAIVTN-DSGLMHVAAALNRPLVAL 286 (348)
T ss_pred CCHHHHHHHHHh--CCEEEec-CChHHHHHHHhCCCEEEE
Confidence 333 558877 4458887 678899999999999874
No 365
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.76 E-value=70 Score=31.18 Aligned_cols=54 Identities=19% Similarity=0.307 Sum_probs=37.7
Q ss_pred CCcccccccCchhHHHHHHh----CCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHh
Q 010093 395 AVGGFVTHCGWNSTLEAVAA----GVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIM 470 (518)
Q Consensus 395 ~~~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll 470 (518)
.++++|+=||-||+..|... ++|++++-. .++ |-. . +++++++.+++.+++
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN~--------G~l------GFL---t--------~~~~~~~~~~l~~l~ 122 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLAPCGIPLLTINT--------GHL------GFL---T--------EAYLNQLDEAIDQVL 122 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhcCCCCcEEEEeC--------CCC------ccc---c--------cCCHHHHHHHHHHHH
Confidence 36679999999999999775 778887743 111 211 1 456778888888888
Q ss_pred cCC
Q 010093 471 VGD 473 (518)
Q Consensus 471 ~~~ 473 (518)
+|+
T Consensus 123 ~g~ 125 (305)
T PRK02649 123 AGQ 125 (305)
T ss_pred cCC
Confidence 644
No 366
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=30.66 E-value=96 Score=28.66 Aligned_cols=42 Identities=26% Similarity=0.368 Sum_probs=28.4
Q ss_pred HHHHHHhhCCCCEEEecCCCc--cHHHHHHH----cCCCeEEEecchH
Q 010093 138 PLEQLLQEHKPDCLVADTFFP--WATDAAAK----FGIPRLVFHGTSF 179 (518)
Q Consensus 138 ~l~~ll~~~~pDlVI~D~~~~--~~~~iA~~----lgiP~v~~~~~~~ 179 (518)
.....++.++||++|+-.--. .++.-|++ .|+|+|+++-.+.
T Consensus 51 ~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~ 98 (277)
T PRK00994 51 VVKKMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPG 98 (277)
T ss_pred HHHHHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCc
Confidence 344566789999999764333 45555554 4999999876643
No 367
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=30.61 E-value=59 Score=28.72 Aligned_cols=32 Identities=19% Similarity=0.394 Sum_probs=21.8
Q ss_pred ccCCCcccccccCchhHHHHHHhCCceecCCcc
Q 010093 392 DHEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVA 424 (518)
Q Consensus 392 ~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~ 424 (518)
.+..++.+|+.||......... ++|+|-+|..
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s 62 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPIS 62 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCC
Confidence 4466777999999888888877 9999998853
No 368
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=30.50 E-value=57 Score=32.25 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
||||.|+-.+..| ..+|..|+++||+|+++...
T Consensus 2 ~mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 2 MARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecH
Confidence 4689998776655 56889999999999999864
No 369
>PRK08322 acetolactate synthase; Reviewed
Probab=30.37 E-value=1.6e+02 Score=31.33 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=21.8
Q ss_pred CcccccccCch------hHHHHHHhCCceecCC
Q 010093 396 VGGFVTHCGWN------STLEAVAAGVPLVTWP 422 (518)
Q Consensus 396 ~~~~ItHgG~~------s~~eal~~GvP~l~~P 422 (518)
..++++|.|-| .+.+|...++|+|++.
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 44588887754 7899999999999874
No 370
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=30.36 E-value=1.2e+02 Score=32.52 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=21.4
Q ss_pred CcccccccCch------hHHHHHHhCCceecCC
Q 010093 396 VGGFVTHCGWN------STLEAVAAGVPLVTWP 422 (518)
Q Consensus 396 ~~~~ItHgG~~------s~~eal~~GvP~l~~P 422 (518)
..++++|.|-| .+.+|...++|||++.
T Consensus 69 ~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 69 PGVCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 44478787754 7799999999999985
No 371
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=30.28 E-value=4.1e+02 Score=23.91 Aligned_cols=102 Identities=13% Similarity=0.166 Sum_probs=52.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccch-hhhhhhhhccCCCeEEEEeeCCCccCCCCCCCCccccc
Q 010093 38 VFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYV-SKSVERANELGIEMDVKTIKFPSVEAGLPEGCENLDAI 116 (518)
Q Consensus 38 Il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~-~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~~~~~~ 116 (518)
|.++...++|-....+.+|-..+.+|..|-++..=.-.... +...... -+..+.|+..+ +++........
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~--~~~~v~~~~~~-----~g~tw~~~~~~-- 101 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEK--FGLGVEFHGMG-----EGFTWETQDRE-- 101 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHh--hccceeEEecC-----CceeCCCcCcH--
Confidence 55677778888877777776666677777666431111000 0000000 02345555543 12222111110
Q ss_pred cchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCc
Q 010093 117 TNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFP 158 (518)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~ 158 (518)
. . ...+...-+..++.+.+.++|+||.|.+.+
T Consensus 102 ------~---d-~~aa~~~w~~a~~~l~~~~ydlviLDEl~~ 133 (198)
T COG2109 102 ------A---D-IAAAKAGWEHAKEALADGKYDLVILDELNY 133 (198)
T ss_pred ------H---H-HHHHHHHHHHHHHHHhCCCCCEEEEehhhH
Confidence 1 1 133344455667778888999999997664
No 372
>PLN02293 adenine phosphoribosyltransferase
Probab=30.26 E-value=1.5e+02 Score=26.56 Aligned_cols=40 Identities=5% Similarity=-0.064 Sum_probs=28.1
Q ss_pred hHHHHHHHHhhCCCCEEEec-CCCc-cHHHHHHHcCCCeEEE
Q 010093 135 LQEPLEQLLQEHKPDCLVAD-TFFP-WATDAAAKFGIPRLVF 174 (518)
Q Consensus 135 ~~~~l~~ll~~~~pDlVI~D-~~~~-~~~~iA~~lgiP~v~~ 174 (518)
+.+.+.+.++..++|+|++= .-.. .+..+|..+|+|++.+
T Consensus 50 ~~~~l~~~~~~~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 50 TIDLFVERYRDMGISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred HHHHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 34445555555689999854 3333 7889999999998864
No 373
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.18 E-value=3.1e+02 Score=22.44 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeCC
Q 010093 51 PIVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 51 p~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
.++.+|+.|+++|.+|+..-..
T Consensus 24 ~~~~VA~~L~e~g~dv~atDI~ 45 (129)
T COG1255 24 FFLDVAKRLAERGFDVLATDIN 45 (129)
T ss_pred hHHHHHHHHHHcCCcEEEEecc
Confidence 4789999999999888766443
No 374
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=30.13 E-value=4.3e+02 Score=28.10 Aligned_cols=120 Identities=14% Similarity=0.162 Sum_probs=63.1
Q ss_pred ccChHHHHHHHHH-HHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCC-----CC-CCccccccc
Q 010093 46 HGHMIPIVDMAKL-FATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLP-----EG-CENLDAITN 118 (518)
Q Consensus 46 ~GH~~p~l~LA~~-L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~-----~~-~~~~~~~~~ 118 (518)
.|++.-...+|+. +.+.|++|.+.-.. ....+++. ..+.++.+++...+ -+. .. .....-...
T Consensus 36 ~~~~~~~~~~a~~~~~~~~~dviIsrG~-ta~~i~~~--------~~iPVv~i~~s~~D-il~al~~a~~~~~~ia~vg~ 105 (526)
T TIGR02329 36 QLGFEDAVREIRQRLGAERCDVVVAGGS-NGAYLKSR--------LSLPVIVIKPTGFD-VMQALARARRIASSIGVVTH 105 (526)
T ss_pred eccHHHHHHHHHHHHHhCCCcEEEECch-HHHHHHHh--------CCCCEEEecCChhh-HHHHHHHHHhcCCcEEEEec
Confidence 4788888888844 66779988776553 44445443 13446666544322 000 00 001110000
Q ss_pred hhhhhhHHHHHHHHH--------hhHHHHHH---HHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEecch
Q 010093 119 EVNKGLIVKFFGATM--------KLQEPLEQ---LLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFHGTS 178 (518)
Q Consensus 119 ~~~~~~~~~~~~~~~--------~~~~~l~~---ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~ 178 (518)
.........+..... ....+... -+++.++++||+|. .+..+|+++|++.|.+.+.-
T Consensus 106 ~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~G~~~viG~~---~~~~~A~~~gl~~ili~s~e 173 (526)
T TIGR02329 106 QDTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRARGIGAVVGAG---LITDLAEQAGLHGVFLYSAD 173 (526)
T ss_pred CcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCCCCEEECCh---HHHHHHHHcCCceEEEecHH
Confidence 000011112222110 01222333 34458999999995 45789999999999998753
No 375
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=29.99 E-value=93 Score=28.51 Aligned_cols=45 Identities=7% Similarity=0.016 Sum_probs=38.3
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYV 78 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 78 (518)
..-||++.+.++-.|-....-++..|..+|++|+++...--.+.+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~ 131 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKI 131 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHH
Confidence 356899999999999999999999999999999999876433333
No 376
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=29.94 E-value=1.2e+02 Score=24.64 Aligned_cols=37 Identities=14% Similarity=0.097 Sum_probs=33.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
||++..-++.|-......+++.|+++|.+|.++-.+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888999999999999999999999999887765
No 377
>PRK11519 tyrosine kinase; Provisional
Probab=29.85 E-value=2.4e+02 Score=31.30 Aligned_cols=45 Identities=13% Similarity=0.200 Sum_probs=34.1
Q ss_pred CCcEEEEE-c-CCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 010093 34 PQLHVFFF-P-FMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYV 78 (518)
Q Consensus 34 ~~~kIl~~-~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 78 (518)
+..|++++ + .|+-|-..-...||..|+..|+.|.++-.+...+.+
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~ 570 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYT 570 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcH
Confidence 45566544 4 568899999999999999999999999665443333
No 378
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=29.69 E-value=98 Score=29.94 Aligned_cols=38 Identities=5% Similarity=-0.039 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCCcc-C---hHHHHHHHHHHHhCCCeEEEEeC
Q 010093 34 PQLHVFFFPFMAHG-H---MIPIVDMAKLFATRGVKASVITT 71 (518)
Q Consensus 34 ~~~kIl~~~~~~~G-H---~~p~l~LA~~L~~rGH~Vt~~~~ 71 (518)
+++||+++..+..+ | +.-...++++|.+.||+|.++..
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 46799988876333 2 45577899999999999988754
No 379
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=29.52 E-value=89 Score=29.51 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=31.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
.|.|+.=|+-|-..-...||..|+++|++|.++=-+
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~D 38 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCD 38 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 577777789999999999999999999999988443
No 380
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=29.35 E-value=71 Score=32.81 Aligned_cols=32 Identities=31% Similarity=0.457 Sum_probs=25.4
Q ss_pred HHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEe
Q 010093 141 QLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFH 175 (518)
Q Consensus 141 ~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~ 175 (518)
+.+++.+||++|... -+..+|+++|||.+.+.
T Consensus 349 ~~l~~~~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 349 EAVLEFEPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred HHHhhCCCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 345668999999983 35568999999999864
No 381
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.11 E-value=1.3e+02 Score=32.21 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=21.6
Q ss_pred CcccccccCch------hHHHHHHhCCceecCC
Q 010093 396 VGGFVTHCGWN------STLEAVAAGVPLVTWP 422 (518)
Q Consensus 396 ~~~~ItHgG~~------s~~eal~~GvP~l~~P 422 (518)
..++++|.|-| .+.+|...++|||++-
T Consensus 68 ~gv~~~t~GpG~~n~l~gia~A~~~~~Pvl~i~ 100 (572)
T PRK08979 68 VGVVLVTSGPGATNTITGIATAYMDSIPMVVLS 100 (572)
T ss_pred CeEEEECCCchHhHHHHHHHHHhhcCCCEEEEe
Confidence 44588887754 6889999999999874
No 382
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=28.98 E-value=4.4e+02 Score=23.88 Aligned_cols=148 Identities=16% Similarity=0.123 Sum_probs=75.2
Q ss_pred CCcEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhc
Q 010093 313 PYSVVYVCFGSLANFTSAQLMEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILD 392 (518)
Q Consensus 313 ~~~vIyvslGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~ 392 (518)
.+.+++|.-|.+. ..-+..|...+.++.+.-+... +.+.......++.+..--.+...+.
T Consensus 9 gk~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~~~-------------~~l~~l~~~~~i~~~~~~~~~~dl~ 68 (205)
T TIGR01470 9 GRAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEELE-------------SELTLLAEQGGITWLARCFDADILE 68 (205)
T ss_pred CCeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCCCC-------------HHHHHHHHcCCEEEEeCCCCHHHhC
Confidence 3568888888765 2334556667877765533211 1222222233555433222344565
Q ss_pred cCCCcccccccCchhHH-----HHHHhCCce--ecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHH
Q 010093 393 HEAVGGFVTHCGWNSTL-----EAVAAGVPL--VTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKA 465 (518)
Q Consensus 393 ~~~~~~~ItHgG~~s~~-----eal~~GvP~--l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~a 465 (518)
. ..++|..-|...+. +|-..|+|+ +--|-..|-..=| .+ ++-++-+.+... -..+ .-+..|++.
T Consensus 69 ~--~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f~~pa-~~-~~g~l~iaisT~----G~sP-~la~~lr~~ 139 (205)
T TIGR01470 69 G--AFLVIAATDDEELNRRVAHAARARGVPVNVVDDPELCSFIFPS-IV-DRSPVVVAISSG----GAAP-VLARLLRER 139 (205)
T ss_pred C--cEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeEEEee-EE-EcCCEEEEEECC----CCCc-HHHHHHHHH
Confidence 5 44477776765333 344578888 5555555543332 34 233344444332 0011 234567777
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHH
Q 010093 466 VNEIMVGDRAEEMRSRAKALGKMAK 490 (518)
Q Consensus 466 v~~ll~~~~~~~~~~~a~~l~~~~~ 490 (518)
|.+++. +....+.+-+.++++.++
T Consensus 140 ie~~l~-~~~~~~~~~~~~~R~~~k 163 (205)
T TIGR01470 140 IETLLP-PSLGDLATLAATWRDAVK 163 (205)
T ss_pred HHHhcc-hhHHHHHHHHHHHHHHHH
Confidence 878773 222345555555555555
No 383
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=28.98 E-value=6.6e+02 Score=27.04 Aligned_cols=143 Identities=13% Similarity=0.165 Sum_probs=74.2
Q ss_pred CcEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcC-CCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhc
Q 010093 314 YSVVYVCFGSLANFTSAQLMEIATGLEASGRNFIWVVSK-NKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILD 392 (518)
Q Consensus 314 ~~vIyvslGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~-~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~ 392 (518)
.+.|-|=.||.+ +.....+....|+.++..+-..+.+ .. .|+.+... +-+..
T Consensus 410 ~~~v~i~~gs~s--d~~~~~~~~~~l~~~g~~~~~~v~sahr-----------~~~~~~~~-----------~~~~~--- 462 (577)
T PLN02948 410 TPLVGIIMGSDS--DLPTMKDAAEILDSFGVPYEVTIVSAHR-----------TPERMFSY-----------ARSAH--- 462 (577)
T ss_pred CCeEEEEECchh--hHHHHHHHHHHHHHcCCCeEEEEECCcc-----------CHHHHHHH-----------HHHHH---
Confidence 444555556544 4556666777777776654433322 22 44332211 11100
Q ss_pred cCCCcccccccCchhHHHH---HHhCCceecCCccc---ccchhHHHHHHhh--hcceee-ccccccccccCccChHHHH
Q 010093 393 HEAVGGFVTHCGWNSTLEA---VAAGVPLVTWPVAA---EQFYNEKMVNEIL--KIGVGV-GIQKWCRIVGDFVKRETIE 463 (518)
Q Consensus 393 ~~~~~~~ItHgG~~s~~ea---l~~GvP~l~~P~~~---DQ~~na~~v~e~~--G~G~~l-~~~~~~~~~~~~~~~~~l~ 463 (518)
...++++|.-.|.-.-.-. -..-+|++++|.-. +..+--.-++ +. |+.+.. ... +..++.-+.
T Consensus 463 ~~~~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~-~~p~g~pv~~v~i~-------~~~~aa~~a 534 (577)
T PLN02948 463 SRGLQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIV-QMPRGVPVATVAIG-------NATNAGLLA 534 (577)
T ss_pred HCCCCEEEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHh-cCCCCCeEEEEecC-------ChHHHHHHH
Confidence 0123457777775433322 33357999999843 2332222333 45 543332 221 234444443
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHHHhc
Q 010093 464 KAVNEIMVGDRAEEMRSRAKALGKMAKRAVEN 495 (518)
Q Consensus 464 ~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~ 495 (518)
.++|. -.++.++++.+..++.+++.+.+
T Consensus 535 ---~~i~~-~~~~~~~~~~~~~~~~~~~~~~~ 562 (577)
T PLN02948 535 ---VRMLG-ASDPDLLDKMEAYQEDMRDMVLE 562 (577)
T ss_pred ---HHHHh-cCCHHHHHHHHHHHHHHHHHHHh
Confidence 45554 33669999999999999976665
No 384
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=28.78 E-value=1.2e+02 Score=25.00 Aligned_cols=34 Identities=15% Similarity=0.120 Sum_probs=27.3
Q ss_pred EEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 010093 39 FFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 39 l~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
+++.++..+.-.-+..+++.|+++|+.|..+..+
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 35 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYP 35 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecC
Confidence 5666666677778999999999999999888543
No 385
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=28.71 E-value=2.7e+02 Score=25.15 Aligned_cols=148 Identities=13% Similarity=0.012 Sum_probs=74.2
Q ss_pred CCcEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhc
Q 010093 313 PYSVVYVCFGSLANFTSAQLMEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILD 392 (518)
Q Consensus 313 ~~~vIyvslGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~ 392 (518)
.+.++.|+-|.++ ...+..|...+..+.+.-+. +.+.+.......++.......+..-+.
T Consensus 10 ~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~~-------------~~~~l~~l~~~~~i~~~~~~~~~~~l~ 69 (202)
T PRK06718 10 NKRVVIVGGGKVA-------GRRAITLLKYGAHIVVISPE-------------LTENLVKLVEEGKIRWKQKEFEPSDIV 69 (202)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcCC-------------CCHHHHHHHhCCCEEEEecCCChhhcC
Confidence 4668889888865 33455666667766555321 112222222223455444444455665
Q ss_pred cCCCcccccccCchhHHHHHH----hCCceecC--CcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHH
Q 010093 393 HEAVGGFVTHCGWNSTLEAVA----AGVPLVTW--PVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAV 466 (518)
Q Consensus 393 ~~~~~~~ItHgG~~s~~eal~----~GvP~l~~--P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av 466 (518)
.++ ++|.--+.-.+.+.++ .++++-.+ |-..|- ..-..+ ++-++-+.+... + ..+ .-+..|++.|
T Consensus 70 ~ad--lViaaT~d~elN~~i~~~a~~~~lvn~~d~~~~~~f-~~Pa~~-~~g~l~iaIsT~--G--~sP-~la~~lr~~i 140 (202)
T PRK06718 70 DAF--LVIAATNDPRVNEQVKEDLPENALFNVITDAESGNV-VFPSAL-HRGKLTISVSTD--G--ASP-KLAKKIRDEL 140 (202)
T ss_pred Cce--EEEEcCCCHHHHHHHHHHHHhCCcEEECCCCccCeE-EEeeEE-EcCCeEEEEECC--C--CCh-HHHHHHHHHH
Confidence 544 4777766666555544 45554332 222222 222233 233444444332 0 011 2345577777
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHH
Q 010093 467 NEIMVGDRAEEMRSRAKALGKMAK 490 (518)
Q Consensus 467 ~~ll~~~~~~~~~~~a~~l~~~~~ 490 (518)
.+++. ..-..+-+.+.++++.++
T Consensus 141 e~~~~-~~~~~~~~~~~~~R~~~k 163 (202)
T PRK06718 141 EALYD-ESYESYIDFLYECRQKIK 163 (202)
T ss_pred HHHcc-hhHHHHHHHHHHHHHHHH
Confidence 77663 223456666667777666
No 386
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=28.65 E-value=76 Score=32.50 Aligned_cols=33 Identities=12% Similarity=-0.029 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 71 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 71 (518)
+++||.|+=.+. --+++|..|+++||+|+.+-.
T Consensus 2 ~~~kI~VIGlG~-----~G~~~A~~La~~G~~V~~~D~ 34 (415)
T PRK11064 2 SFETISVIGLGY-----IGLPTAAAFASRQKQVIGVDI 34 (415)
T ss_pred CccEEEEECcch-----hhHHHHHHHHhCCCEEEEEeC
Confidence 467888874443 346889999999999998865
No 387
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=28.48 E-value=1e+02 Score=29.77 Aligned_cols=38 Identities=11% Similarity=0.096 Sum_probs=31.7
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 71 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 71 (518)
||.+|.|..-|+-|-..-...||-.|+++|++|.++-.
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~ 40 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGC 40 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEec
Confidence 34456677777999999999999999999999999944
No 388
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=28.42 E-value=3.5e+02 Score=25.50 Aligned_cols=101 Identities=20% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCC-CeEEEEeeCCCccC-----CCCCCCCccccccchhhhhhH
Q 010093 52 IVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGI-EMDVKTIKFPSVEA-----GLPEGCENLDAITNEVNKGLI 125 (518)
Q Consensus 52 ~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~-~i~~~~ip~~~~~~-----~l~~~~~~~~~~~~~~~~~~~ 125 (518)
+-..++.+.+.|-.|.+.+...+...+.+. ... .+-+.-+|.+.... +++.+.--....+..
T Consensus 117 ~~ea~~~~~~~~~rVflt~G~~~l~~f~~~------~~~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs------ 184 (257)
T COG2099 117 IEEAAEAAKQLGRRVFLTTGRQNLAHFVAA------DAHSHVLARVLPPPDVLAKCEDLGVPPARIIAMRGPFS------ 184 (257)
T ss_pred HHHHHHHHhccCCcEEEecCccchHHHhcC------cccceEEEEEcCchHHHHHHHhcCCChhhEEEecCCcC------
Q ss_pred HHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCccH-----HHHHHHcCCCeEEE
Q 010093 126 VKFFGATMKLQEPLEQLLQEHKPDCLVADTFFPWA-----TDAAAKFGIPRLVF 174 (518)
Q Consensus 126 ~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~~~-----~~iA~~lgiP~v~~ 174 (518)
.+.-+.+++.++.|+||+-...-.+ ..+|+.+|||+|.+
T Consensus 185 ----------~~~n~all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 185 ----------EEDNKALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred ----------hHHHHHHHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEE
No 389
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=28.35 E-value=1.5e+02 Score=26.04 Aligned_cols=107 Identities=18% Similarity=0.258 Sum_probs=66.1
Q ss_pred CCcEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhc
Q 010093 313 PYSVVYVCFGSLANFTSAQLMEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILD 392 (518)
Q Consensus 313 ~~~vIyvslGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~ 392 (518)
.+.+-.+.+|.+. +.+++.++.++.+++..-.... -.+.+. ... ..+.+-.++|+
T Consensus 36 g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~~-----------~~~~~~----~~~---~~~~~l~ell~ 90 (178)
T PF02826_consen 36 GKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSPK-----------PEEGAD----EFG---VEYVSLDELLA 90 (178)
T ss_dssp TSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSCH-----------HHHHHH----HTT---EEESSHHHHHH
T ss_pred CCEEEEEEEcCCc-------CeEeeeeecCCceeEEecccCC-----------hhhhcc----ccc---ceeeehhhhcc
Confidence 5668899999987 6777888888998877654432 001011 112 25568889998
Q ss_pred cCCCcccccccCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceee-ccccccccccCccChHHHHHHHHH
Q 010093 393 HEAVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGV-GIQKWCRIVGDFVKRETIEKAVNE 468 (518)
Q Consensus 393 ~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l-~~~~~~~~~~~~~~~~~l~~av~~ 468 (518)
.+++ ++.|+-.+. --.+..|+..+ +.++-|..+ +.. +++-++.++|.+++++
T Consensus 91 ~aDi--v~~~~plt~----------------~T~~li~~~~l-~~mk~ga~lvN~a-----RG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 91 QADI--VSLHLPLTP----------------ETRGLINAEFL-AKMKPGAVLVNVA-----RGELVDEDALLDALES 143 (178)
T ss_dssp H-SE--EEE-SSSST----------------TTTTSBSHHHH-HTSTTTEEEEESS-----SGGGB-HHHHHHHHHT
T ss_pred hhhh--hhhhhcccc----------------ccceeeeeeee-eccccceEEEecc-----chhhhhhhHHHHHHhh
Confidence 8665 777753321 13567788888 588877544 443 5567788888777753
No 390
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.33 E-value=85 Score=30.45 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=37.8
Q ss_pred CcccccccCchhHHHHHHh----CCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhc
Q 010093 396 VGGFVTHCGWNSTLEAVAA----GVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMV 471 (518)
Q Consensus 396 ~~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~ 471 (518)
++++|+=||-||+.+++.. ++|++++... ++ |-. . ..+++++.++|.++++
T Consensus 63 ~d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------~l------GFl---~--------~~~~~~~~~~l~~~~~ 117 (295)
T PRK01231 63 CDLVIVVGGDGSLLGAARALARHNVPVLGINRG--------RL------GFL---T--------DIRPDELEFKLAEVLD 117 (295)
T ss_pred CCEEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------cc------ccc---c--------cCCHHHHHHHHHHHHc
Confidence 4559999999999999763 6677776541 11 211 2 4678889999999987
Q ss_pred CC
Q 010093 472 GD 473 (518)
Q Consensus 472 ~~ 473 (518)
|+
T Consensus 118 g~ 119 (295)
T PRK01231 118 GH 119 (295)
T ss_pred CC
Confidence 44
No 391
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=28.26 E-value=2.1e+02 Score=28.27 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=36.9
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCcc
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAP 76 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 76 (518)
+...|.|.-.++.|-..-+..|+..|.++|+.|.+++.+....
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~ 97 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSST 97 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCcc
Confidence 3456778889999999999999999999999999999876443
No 392
>PLN02240 UDP-glucose 4-epimerase
Probab=28.10 E-value=91 Score=30.76 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 71 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 71 (518)
+.+|++. ++.|.+ -..|++.|.++||+|+.+..
T Consensus 5 ~~~vlIt--GatG~i--G~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 5 GRTILVT--GGAGYI--GSHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCEEEEE--CCCChH--HHHHHHHHHHCCCEEEEEeC
Confidence 3566653 455655 56778999999999998864
No 393
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=28.07 E-value=6e+02 Score=27.39 Aligned_cols=45 Identities=24% Similarity=0.445 Sum_probs=35.5
Q ss_pred hHHHHHHHHhhCCCCEEE----ecCCCccHHHHHHHcCCCeEEEecchH
Q 010093 135 LQEPLEQLLQEHKPDCLV----ADTFFPWATDAAAKFGIPRLVFHGTSF 179 (518)
Q Consensus 135 ~~~~l~~ll~~~~pDlVI----~D~~~~~~~~iA~~lgiP~v~~~~~~~ 179 (518)
....+...++...+|-+| ||-..+..+..|..+++|.|++.-.+.
T Consensus 99 IAdsiE~~~~a~~~Dg~V~i~~CDK~~PG~lMaaarlniPsi~v~gGpm 147 (615)
T PRK12448 99 IADSVEYMVNAHCADAMVCISNCDKITPGMLMAALRLNIPVVFVSGGPM 147 (615)
T ss_pred HHHHHHHHhhCCCcceEEEeccCCCchHHHHHHHHhcCCCEEEEeCCCc
Confidence 344556667778999988 787788888999999999999976543
No 394
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=27.90 E-value=1.6e+02 Score=25.76 Aligned_cols=44 Identities=27% Similarity=0.380 Sum_probs=31.6
Q ss_pred hhHHHHHHHHhhCCCCEEEecCCCcc---------------HHHHHHHcCCCeEEEecc
Q 010093 134 KLQEPLEQLLQEHKPDCLVADTFFPW---------------ATDAAAKFGIPRLVFHGT 177 (518)
Q Consensus 134 ~~~~~l~~ll~~~~pDlVI~D~~~~~---------------~~~iA~~lgiP~v~~~~~ 177 (518)
.+.+.+.+++++.+||.++++..++. ...++...|+|+.-+.+.
T Consensus 48 ~I~~~l~~~i~~~~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~ 106 (164)
T PRK00039 48 QIYDGLSELIDEYQPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPL 106 (164)
T ss_pred HHHHHHHHHHHHhCCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 34568888999999999999864432 234667778887776554
No 395
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=27.56 E-value=1.3e+02 Score=27.93 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=30.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCe-EEEEeC
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVK-ASVITT 71 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~-Vt~~~~ 71 (518)
|.-|+|+-.|..|-......|.++|.++||. ++.+..
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~ 38 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIID 38 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEec
Confidence 3467888899999999999999999999986 444433
No 396
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=27.55 E-value=1.4e+02 Score=26.00 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=20.8
Q ss_pred CcccccccCc------hhHHHHHHhCCceecCCc
Q 010093 396 VGGFVTHCGW------NSTLEAVAAGVPLVTWPV 423 (518)
Q Consensus 396 ~~~~ItHgG~------~s~~eal~~GvP~l~~P~ 423 (518)
..++++|.|. +++.+|...++|+|++.-
T Consensus 65 ~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 65 PGVVIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp EEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred ceEEEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 4448888874 478889999999999763
No 397
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=27.55 E-value=1.7e+02 Score=26.89 Aligned_cols=46 Identities=26% Similarity=0.364 Sum_probs=32.0
Q ss_pred hhHHHHHHHHhhCCCCEEEecCCCc----------------------cHHHHHHHcCCCeEEEecchH
Q 010093 134 KLQEPLEQLLQEHKPDCLVADTFFP----------------------WATDAAAKFGIPRLVFHGTSF 179 (518)
Q Consensus 134 ~~~~~l~~ll~~~~pDlVI~D~~~~----------------------~~~~iA~~lgiP~v~~~~~~~ 179 (518)
.+...+++-+++++||+||...-+- -....++.+|||++.+.+...
T Consensus 235 kl~r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGGY 302 (324)
T KOG1344|consen 235 KLKRCLMQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSGGY 302 (324)
T ss_pred HHHHHHHHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecCce
Confidence 3455666667779999999754221 124578889999999887654
No 398
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=27.44 E-value=1.1e+02 Score=27.79 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=29.9
Q ss_pred HHHHHHHHhhCCCCEEEecCCC------ccHHHHHHHcCCCeEE
Q 010093 136 QEPLEQLLQEHKPDCLVADTFF------PWATDAAAKFGIPRLV 173 (518)
Q Consensus 136 ~~~l~~ll~~~~pDlVI~D~~~------~~~~~iA~~lgiP~v~ 173 (518)
.+.+.++++..+||+|+..... ..+..+|.++|.|++.
T Consensus 97 a~al~~~i~~~~p~lVL~~~t~~~~~grdlaprlAarLga~lvs 140 (202)
T cd01714 97 AKALAAAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQIT 140 (202)
T ss_pred HHHHHHHHHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCCccc
Confidence 3456666777789999988655 3689999999999876
No 399
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=27.34 E-value=4.7e+02 Score=23.66 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=31.4
Q ss_pred CcEEEEEc-CCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 35 QLHVFFFP-FMAHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 35 ~~kIl~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
|.++-|+. ....|-..-+++-++....+|-.|.++.+.-
T Consensus 3 ~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~i 42 (201)
T COG1435 3 MGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAI 42 (201)
T ss_pred eEEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccc
Confidence 45654444 4477999999999999999999999999863
No 400
>PRK03094 hypothetical protein; Provisional
Probab=27.33 E-value=56 Score=24.63 Aligned_cols=21 Identities=10% Similarity=0.341 Sum_probs=17.1
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 010093 52 IVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 52 ~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
+..|.+.|.++||+|.=+..+
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcc
Confidence 457899999999999866553
No 401
>PRK06756 flavodoxin; Provisional
Probab=27.18 E-value=1.1e+02 Score=25.91 Aligned_cols=37 Identities=11% Similarity=0.072 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCccChHHH-HHHHHHHHhCCCeEEEEeC
Q 010093 35 QLHVFFFPFMAHGHMIPI-VDMAKLFATRGVKASVITT 71 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~-l~LA~~L~~rGH~Vt~~~~ 71 (518)
||||+++=....||.--+ ..|++.|.++|++|.+...
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 467776666677888774 4568888889999987654
No 402
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.11 E-value=1e+02 Score=32.75 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=29.6
Q ss_pred CcEEEEEc-------CCCccChHHHHH---HHHHHHhCCCeEEEEeCCCCc
Q 010093 35 QLHVFFFP-------FMAHGHMIPIVD---MAKLFATRGVKASVITTPANA 75 (518)
Q Consensus 35 ~~kIl~~~-------~~~~GH~~p~l~---LA~~L~~rGH~Vt~~~~~~~~ 75 (518)
|.++++.+ .+..||+.++++ +|+-++.+||+|.|+|..+-+
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeH 54 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEH 54 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCC
Confidence 35666554 347799986553 577777899999999887654
No 403
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.94 E-value=70 Score=30.49 Aligned_cols=30 Identities=10% Similarity=0.076 Sum_probs=26.0
Q ss_pred CCccChHHHHHHHHHHHh-CCCeEEEEeCCC
Q 010093 44 MAHGHMIPIVDMAKLFAT-RGVKASVITTPA 73 (518)
Q Consensus 44 ~~~GH~~p~l~LA~~L~~-rGH~Vt~~~~~~ 73 (518)
--+|++--.-+||+.|++ .||+|.+-+.+.
T Consensus 12 DNyGDIGV~wRLARql~re~G~~VrLWvDd~ 42 (370)
T COG4394 12 DNYGDIGVAWRLARQLKREHGWQVRLWVDDK 42 (370)
T ss_pred cccchhHHHHHHHHHHHHHhCceeeeecCCH
Confidence 468999999999999976 699999988763
No 404
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=26.90 E-value=2.8e+02 Score=29.58 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=21.9
Q ss_pred CcccccccCch------hHHHHHHhCCceecCC
Q 010093 396 VGGFVTHCGWN------STLEAVAAGVPLVTWP 422 (518)
Q Consensus 396 ~~~~ItHgG~~------s~~eal~~GvP~l~~P 422 (518)
..++++|.|-| .+.+|-..++|+|++-
T Consensus 72 ~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 104 (557)
T PRK08199 72 PGICFVTRGPGATNASIGVHTAFQDSTPMILFV 104 (557)
T ss_pred CEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 45588888854 7889999999999873
No 405
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=26.86 E-value=71 Score=33.22 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=35.8
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchhh
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSK 80 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~ 80 (518)
..||++...++.+ .+=...|++.|.++||+|.++.++.....+..
T Consensus 70 ~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p 114 (475)
T PRK13982 70 SKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQQFVTP 114 (475)
T ss_pred CCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHHHHhhH
Confidence 4688888777644 44788999999999999999999877666654
No 406
>PRK13236 nitrogenase reductase; Reviewed
Probab=26.81 E-value=1.2e+02 Score=29.26 Aligned_cols=37 Identities=11% Similarity=0.153 Sum_probs=31.0
Q ss_pred cEEE-EEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 010093 36 LHVF-FFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 36 ~kIl-~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
||++ |.--++-|-......||-.|+++|++|.++=-+
T Consensus 6 ~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D 43 (296)
T PRK13236 6 IRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCD 43 (296)
T ss_pred ceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEcc
Confidence 4554 766779999999999999999999999999443
No 407
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=26.80 E-value=4.5e+02 Score=23.22 Aligned_cols=33 Identities=21% Similarity=0.162 Sum_probs=28.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVI 69 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~ 69 (518)
-|.++...+.|-..-.+.+|-..+.+|+.|.++
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 466777789999999999999999999999766
No 408
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=26.77 E-value=1.3e+02 Score=32.36 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=21.9
Q ss_pred CcccccccCch------hHHHHHHhCCceecCC
Q 010093 396 VGGFVTHCGWN------STLEAVAAGVPLVTWP 422 (518)
Q Consensus 396 ~~~~ItHgG~~------s~~eal~~GvP~l~~P 422 (518)
..++++|.|-| .+.+|...++|||++.
T Consensus 74 ~gv~~~t~GPG~~n~~~gla~A~~~~~Pvl~i~ 106 (566)
T PRK07282 74 LGVAVVTSGPGATNAITGIADAMSDSVPLLVFT 106 (566)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 44588888855 6789999999999985
No 409
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.70 E-value=1.1e+02 Score=29.56 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=0.0
Q ss_pred CCcccccccCchhHHHHHHh----CCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHh
Q 010093 395 AVGGFVTHCGWNSTLEAVAA----GVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIM 470 (518)
Q Consensus 395 ~~~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll 470 (518)
.++++|+=||-||+..|... ++|++++-..- +|-.. +++.+++.+++.+++
T Consensus 68 ~~D~vi~lGGDGT~L~aa~~~~~~~~PilGIN~G~--------------lGFL~-----------~~~~~~~~~~l~~i~ 122 (296)
T PRK04539 68 YCDLVAVLGGDGTFLSVAREIAPRAVPIIGINQGH--------------LGFLT-----------QIPREYMTDKLLPVL 122 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHhcccCCCEEEEecCC--------------CeEee-----------ccCHHHHHHHHHHHH
Q ss_pred cCCh
Q 010093 471 VGDR 474 (518)
Q Consensus 471 ~~~~ 474 (518)
+|+.
T Consensus 123 ~g~~ 126 (296)
T PRK04539 123 EGKY 126 (296)
T ss_pred cCCc
No 410
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=26.63 E-value=1.1e+02 Score=29.17 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=31.4
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 70 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 70 (518)
|.+|.|+-=|+-|-..-...||..|+++|+.|.++=
T Consensus 1 ~~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD 36 (279)
T PRK13230 1 MRKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVG 36 (279)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 346888877899999999999999999999998883
No 411
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=26.58 E-value=75 Score=30.64 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=24.3
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 71 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 71 (518)
|||+|+=.+..| ..+|..|.+.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 467777665554 5688889999999999987
No 412
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=26.47 E-value=90 Score=31.70 Aligned_cols=41 Identities=17% Similarity=0.145 Sum_probs=30.4
Q ss_pred EeecCccHHHhhccCCC--cccccccCchhHHHHHHhCCceec
Q 010093 380 IIRGWAPQVLILDHEAV--GGFVTHCGWNSTLEAVAAGVPLVT 420 (518)
Q Consensus 380 ~~~~~~pq~~lL~~~~~--~~~ItHgG~~s~~eal~~GvP~l~ 420 (518)
.+.+|.=+..+|..++= =..+||||.-++-.+++.|.=+|.
T Consensus 466 avsDwp~lnallntA~GatwvslHhGGGvgmG~s~h~G~viVa 508 (561)
T COG2987 466 AVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHAGMVIVA 508 (561)
T ss_pred hhhhhHHHHHHhhhccCCcEEEEecCCcccccccccCceEEEe
Confidence 35588778888876431 137899999999999999876654
No 413
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=26.40 E-value=66 Score=33.49 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=38.5
Q ss_pred CCcccccccCchhHHHHHHh----CCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHh
Q 010093 395 AVGGFVTHCGWNSTLEAVAA----GVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIM 470 (518)
Q Consensus 395 ~~~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll 470 (518)
.++++|+=||-||++.|... ++|++++ |..++ | -. . .++++++.++|.+++
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~~~~iPILGI--------N~G~L----G--FL---t--------~i~~~e~~~~Le~il 316 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFKGPVPPVVPF--------SMGSL----G--FM---T--------PFHSEQYRDCLDAIL 316 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhccCCCcEEEE--------eCCCc----c--ee---c--------ccCHHHHHHHHHHHH
Confidence 35669999999999999775 4566654 33222 2 22 2 467888999999998
Q ss_pred cCCh
Q 010093 471 VGDR 474 (518)
Q Consensus 471 ~~~~ 474 (518)
+|+.
T Consensus 317 ~G~y 320 (508)
T PLN02935 317 KGPI 320 (508)
T ss_pred cCCc
Confidence 7443
No 414
>PRK00170 azoreductase; Reviewed
Probab=26.24 E-value=1.2e+02 Score=27.05 Aligned_cols=37 Identities=5% Similarity=0.041 Sum_probs=22.4
Q ss_pred CcEEE-EEcCCCc--cChHHHH-HHHHHHHhC--CCeEEEEeC
Q 010093 35 QLHVF-FFPFMAH--GHMIPIV-DMAKLFATR--GVKASVITT 71 (518)
Q Consensus 35 ~~kIl-~~~~~~~--GH~~p~l-~LA~~L~~r--GH~Vt~~~~ 71 (518)
||||+ +..+|-. |...-++ .+.+.|.++ ||+|+++--
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL 43 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDL 43 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 56876 4555633 3333333 456677777 899987754
No 415
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=26.16 E-value=5.3e+02 Score=25.53 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEEeCC
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGV-KASVITTP 72 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH-~Vt~~~~~ 72 (518)
+..||+++=.++.| ..+|+.|+..|+ +++++=..
T Consensus 23 ~~~~VlVvG~GglG-----s~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALG-----TANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCeEEEEeCC
Confidence 34689999888766 567899999998 67777664
No 416
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=26.03 E-value=1.1e+02 Score=28.69 Aligned_cols=36 Identities=28% Similarity=0.317 Sum_probs=23.4
Q ss_pred HHhhCCCCEEEecCCCcc--H-HHHHHHcCCCeEEEecc
Q 010093 142 LLQEHKPDCLVADTFFPW--A-TDAAAKFGIPRLVFHGT 177 (518)
Q Consensus 142 ll~~~~pDlVI~D~~~~~--~-~~iA~~lgiP~v~~~~~ 177 (518)
.+...+||+||....... . -.+...+|+|++.+...
T Consensus 69 ~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 69 KIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred HHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 345579999998754432 1 22334589999887643
No 417
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=25.96 E-value=1.1e+02 Score=30.84 Aligned_cols=70 Identities=29% Similarity=0.324 Sum_probs=45.2
Q ss_pred CcccccccCchhHHHHHHh------------C-----CceecCCcccccchhHHHHHHhhhcceeeccccccccccCccC
Q 010093 396 VGGFVTHCGWNSTLEAVAA------------G-----VPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVK 458 (518)
Q Consensus 396 ~~~~ItHgG~~s~~eal~~------------G-----vP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~ 458 (518)
...++|.||..+..-|+.+ | .|++.++-.. |+-+.+.+ ..+|+|+..-+. .++..++
T Consensus 104 ~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa-~~lGlg~~~I~~----~~~~~md 177 (373)
T PF00282_consen 104 AGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAA-RILGLGVRKIPT----DEDGRMD 177 (373)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHH-HHTTSEEEEE-B----BTTSSB-
T ss_pred CceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhc-ceeeeEEEEecC----Ccchhhh
Confidence 4578999998888777533 3 3455554333 55555555 688999766443 2345688
Q ss_pred hHHHHHHHHHHhc
Q 010093 459 RETIEKAVNEIMV 471 (518)
Q Consensus 459 ~~~l~~av~~ll~ 471 (518)
.++|.++|.+..+
T Consensus 178 ~~~L~~~l~~~~~ 190 (373)
T PF00282_consen 178 IEALEKALEKDIA 190 (373)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhhhhhccccc
Confidence 8999998888764
No 418
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=25.94 E-value=52 Score=31.56 Aligned_cols=39 Identities=23% Similarity=0.369 Sum_probs=31.6
Q ss_pred cCchh--HHHHHHhCCceecCCcccccchhHHHHHHhhhcc
Q 010093 403 CGWNS--TLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIG 441 (518)
Q Consensus 403 gG~~s--~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G 441 (518)
||||+ +.-|-.+||-++++-+...|..++..-++..|+.
T Consensus 81 CGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~ 121 (283)
T COG2230 81 CGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE 121 (283)
T ss_pred CChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 47765 4556777999999999999999999733588888
No 419
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=25.92 E-value=2.3e+02 Score=30.30 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=21.8
Q ss_pred CcccccccCch------hHHHHHHhCCceecCC
Q 010093 396 VGGFVTHCGWN------STLEAVAAGVPLVTWP 422 (518)
Q Consensus 396 ~~~~ItHgG~~------s~~eal~~GvP~l~~P 422 (518)
..++++|.|-| .+.+|..-++|+|++-
T Consensus 65 ~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 65 VGVVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 44588887754 7899999999999984
No 420
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=25.72 E-value=1.1e+02 Score=25.32 Aligned_cols=38 Identities=16% Similarity=0.289 Sum_probs=27.6
Q ss_pred CcEEEEecCCcccCCHHHHHHHHHHHHh-C-CCcEEEEEc
Q 010093 314 YSVVYVCFGSLANFTSAQLMEIATGLEA-S-GRNFIWVVS 351 (518)
Q Consensus 314 ~~vIyvslGS~~~~~~~~~~~l~~al~~-~-~~~~i~~~~ 351 (518)
+.+++++|||......+.+..+.+.+++ . +..+-|..-
T Consensus 1 ~aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~aft 40 (127)
T cd03412 1 KAILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFT 40 (127)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 3589999999876556678888888864 3 446667754
No 421
>PF01924 HypD: Hydrogenase formation hypA family; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes []. This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas [].; GO: 0046872 metal ion binding; PDB: 2Z1D_A.
Probab=25.55 E-value=93 Score=30.71 Aligned_cols=146 Identities=18% Similarity=0.237 Sum_probs=72.0
Q ss_pred hHHhHhhhcCCCCcEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEe
Q 010093 302 LECLKWLNSKQPYSVVYVCFGSLANFTSAQLMEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLII 381 (518)
Q Consensus 302 ~~l~~~l~~~~~~~vIyvslGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~ 381 (518)
.+-.+.-...+++.|||++-|--.. .+..-..+.++.+.-...|-....... .|..
T Consensus 114 ~dAl~iA~~nP~k~vVF~avGFETT-aP~~A~~i~~a~~~~~~Nfsvl~~hk~-----------~ppa------------ 169 (355)
T PF01924_consen 114 LDALKIAKENPDKEVVFFAVGFETT-APATAAAILQAKEEGIKNFSVLSSHKL-----------TPPA------------ 169 (355)
T ss_dssp HHHHHHHHH-TTSEEEEEEEE-HHH-HHHHHHHHHHHHHHT-SSEEEEEEEE------------CHHH------------
T ss_pred HHHHHHHHhCCCCceEEEEeCcccC-cHHHHHHHHHHHHcCCCCEEEEEeccc-----------cHHH------------
Confidence 4455566667778899999887543 233334455555443333322222111 2322
Q ss_pred ecCccHHHhhccC--CCcccccccCchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccCh
Q 010093 382 RGWAPQVLILDHE--AVGGFVTHCGWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKR 459 (518)
Q Consensus 382 ~~~~pq~~lL~~~--~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~ 459 (518)
...||..+ .+++||.=|=..++. +-.+ .. .++++.|+-..+. .|.+
T Consensus 170 -----l~~ll~~~~~~idGfi~PGHVs~I~---------------G~~~-y~-~l~~~y~~P~vIa----------GFEp 217 (355)
T PF01924_consen 170 -----LEALLEDPELKIDGFICPGHVSTII---------------GSEP-YE-FLAEEYGIPCVIA----------GFEP 217 (355)
T ss_dssp -----HHHHHHTT----SEEEEEHHHHHHH---------------CCHH-HH-HHHHCC---EEEE-----------SSH
T ss_pred -----HHHHHcCCCCCccEEEeCCeeeEEe---------------cchh-hH-HHHHHcCCCeEEc----------CCCH
Confidence 35555554 566777765333332 1111 11 2225666666663 5788
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 010093 460 ETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEEL 510 (518)
Q Consensus 460 ~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 510 (518)
.+|..+|..++. .+.+.-.++....+.+|.+.|...+ .++|+.+
T Consensus 218 ~diL~ai~~lv~-----qi~~g~~~v~N~Y~r~V~~eGN~~A--~~~i~ev 261 (355)
T PF01924_consen 218 LDILQAIYMLVK-----QINEGEAEVENQYPRVVKPEGNPKA--QELINEV 261 (355)
T ss_dssp HHHHHHHHHHHH-----HHHTT---EEES-TTT--TT--HHH--HHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHCCCCeEEEecceeeCCccCHHH--HHHHHHH
Confidence 899999988886 5666666666666667778888665 6777654
No 422
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=25.51 E-value=92 Score=27.45 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=23.5
Q ss_pred hhCCCCEEEecCCCccHHHHHHHcCCCeEEEecchH
Q 010093 144 QEHKPDCLVADTFFPWATDAAAKFGIPRLVFHGTSF 179 (518)
Q Consensus 144 ~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~~~ 179 (518)
...+.|+||.+. ....+|+++|+|++.+.++.-
T Consensus 122 ~~~G~~viVGg~---~~~~~A~~~gl~~v~i~sg~e 154 (176)
T PF06506_consen 122 KAEGVDVIVGGG---VVCRLARKLGLPGVLIESGEE 154 (176)
T ss_dssp HHTT--EEEESH---HHHHHHHHTTSEEEESS--HH
T ss_pred HHcCCcEEECCH---HHHHHHHHcCCcEEEEEecHH
Confidence 347899999995 357899999999999877543
No 423
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=25.48 E-value=1.7e+02 Score=26.23 Aligned_cols=40 Identities=15% Similarity=0.102 Sum_probs=27.8
Q ss_pred HHHHHHHhhCCCCEEEec-CCC-ccHHHHHHHcCCCeEEEec
Q 010093 137 EPLEQLLQEHKPDCLVAD-TFF-PWATDAAAKFGIPRLVFHG 176 (518)
Q Consensus 137 ~~l~~ll~~~~pDlVI~D-~~~-~~~~~iA~~lgiP~v~~~~ 176 (518)
..+.+.+...++|+|++= .-. +.+..+|..+|+|++.+.-
T Consensus 40 ~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vRK 81 (191)
T TIGR01744 40 EEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVVFARK 81 (191)
T ss_pred HHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEEe
Confidence 344444455689999943 333 3688899999999998643
No 424
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=25.45 E-value=1.4e+02 Score=27.42 Aligned_cols=38 Identities=8% Similarity=-0.045 Sum_probs=26.2
Q ss_pred cEEEEEcCC----CccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 36 LHVFFFPFM----AHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 36 ~kIl~~~~~----~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
.||+++..+ ......=+..--..|.+.|++|+++++..
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~ 43 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDI 43 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 477765531 12244456667788999999999999854
No 425
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=25.42 E-value=4.5e+02 Score=25.32 Aligned_cols=102 Identities=6% Similarity=0.069 Sum_probs=53.8
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHh--CCCeEEEEeCC--CCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCC
Q 010093 33 IPQLHVFFFPFMAHGHMIPIVDMAKLFAT--RGVKASVITTP--ANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPE 108 (518)
Q Consensus 33 ~~~~kIl~~~~~~~GH~~p~l~LA~~L~~--rGH~Vt~~~~~--~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~ 108 (518)
.+++||+|+..+..+. +.+|.++... .+++|.++.+. .......+ .++.+..++..
T Consensus 87 ~~~~ri~vl~Sg~g~n---l~al~~~~~~~~~~~~i~~visn~~~~~~lA~~---------~gIp~~~~~~~-------- 146 (286)
T PRK13011 87 AARPKVLIMVSKFDHC---LNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAW---------HGIPFHHFPIT-------- 146 (286)
T ss_pred ccCceEEEEEcCCccc---HHHHHHHHHcCCCCcEEEEEEECCccHHHHHHH---------hCCCEEEeCCC--------
Confidence 4678999998886333 3444444443 36898887553 22222111 14555554310
Q ss_pred CCCccccccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCc-cHHHHHHHcCCCeEEE
Q 010093 109 GCENLDAITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFP-WATDAAAKFGIPRLVF 174 (518)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~-~~~~iA~~lgiP~v~~ 174 (518)
..+. ......+.+.+++.++|+||+-.|+. ....+-..+.-..+-+
T Consensus 147 -~~~~-------------------~~~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiNi 193 (286)
T PRK13011 147 -PDTK-------------------PQQEAQVLDVVEESGAELVVLARYMQVLSPELCRKLAGRAINI 193 (286)
T ss_pred -cCch-------------------hhhHHHHHHHHHHhCcCEEEEeChhhhCCHHHHhhccCCeEEe
Confidence 0000 01122456677888999999886655 4444444444444443
No 426
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=25.39 E-value=88 Score=30.54 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
||||.|+=.+..| ..+|..|+++||+|+++...
T Consensus 1 mmkI~iiG~G~mG-----~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 1 MMKIAVLGAGSWG-----TALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 5688888665544 56888899999999988764
No 427
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=25.16 E-value=6.9e+02 Score=27.55 Aligned_cols=35 Identities=14% Similarity=0.304 Sum_probs=28.9
Q ss_pred EEEEEcCC-CccChHHHHHHHHHHHhCCCeEEEEeC
Q 010093 37 HVFFFPFM-AHGHMIPIVDMAKLFATRGVKASVITT 71 (518)
Q Consensus 37 kIl~~~~~-~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 71 (518)
.|++.+.. .-|-..-.+.|++.|.++|.+|.++=|
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 46666544 688899999999999999999988754
No 428
>PLN02924 thymidylate kinase
Probab=25.05 E-value=5.4e+02 Score=23.60 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=29.5
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
+=|+|-=..+-|--.-...|++.|..+|+.|.+...+
T Consensus 17 ~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep 53 (220)
T PLN02924 17 ALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFP 53 (220)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCC
Confidence 3355666779999999999999999999998665544
No 429
>PRK08266 hypothetical protein; Provisional
Probab=25.00 E-value=3.4e+02 Score=28.85 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=21.5
Q ss_pred CcccccccCch------hHHHHHHhCCceecCC
Q 010093 396 VGGFVTHCGWN------STLEAVAAGVPLVTWP 422 (518)
Q Consensus 396 ~~~~ItHgG~~------s~~eal~~GvP~l~~P 422 (518)
..++++|.|-| .+.+|...++|+|++-
T Consensus 69 ~~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 101 (542)
T PRK08266 69 PGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLT 101 (542)
T ss_pred CeEEEECCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 34478887754 8899999999999874
No 430
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=24.92 E-value=1.1e+02 Score=26.51 Aligned_cols=33 Identities=12% Similarity=-0.025 Sum_probs=25.2
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
..+|+++=.+. .....++.|.+.||+||++.++
T Consensus 13 ~~~vlVvGGG~-----va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIGGGK-----IAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCEEEEECCCH-----HHHHHHHHHHhCCCEEEEEcCc
Confidence 35777775543 3478899999999999999754
No 431
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=24.90 E-value=1.4e+02 Score=28.08 Aligned_cols=36 Identities=14% Similarity=0.034 Sum_probs=29.6
Q ss_pred cEEEEEc-CCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 010093 36 LHVFFFP-FMAHGHMIPIVDMAKLFATRGVKASVITT 71 (518)
Q Consensus 36 ~kIl~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 71 (518)
..|++.. -|+.|-..-...||..|++.|++|..+=-
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~ 38 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDL 38 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 3555544 66999999999999999999999988844
No 432
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=24.90 E-value=4.5e+02 Score=22.66 Aligned_cols=144 Identities=18% Similarity=0.223 Sum_probs=76.9
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHhCCCcEE-EEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhccC
Q 010093 316 VVYVCFGSLANFTSAQLMEIATGLEASGRNFI-WVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHE 394 (518)
Q Consensus 316 vIyvslGS~~~~~~~~~~~l~~al~~~~~~~i-~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~~~ 394 (518)
.|-|=+||-+ +-+..+..++.|.+++..+- ++++.+. -|+...+..+ =....
T Consensus 4 ~V~IIMGS~S--D~~~mk~Aa~~L~~fgi~ye~~VvSAHR-----------TPe~m~~ya~--------------~a~~~ 56 (162)
T COG0041 4 KVGIIMGSKS--DWDTMKKAAEILEEFGVPYEVRVVSAHR-----------TPEKMFEYAE--------------EAEER 56 (162)
T ss_pred eEEEEecCcc--hHHHHHHHHHHHHHcCCCeEEEEEeccC-----------CHHHHHHHHH--------------HHHHC
Confidence 3556677755 45566677888888887654 4445444 3432211100 00112
Q ss_pred CCcccccccCch---hHHHHHHhCCceecCCccc---ccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHH
Q 010093 395 AVGGFVTHCGWN---STLEAVAAGVPLVTWPVAA---EQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNE 468 (518)
Q Consensus 395 ~~~~~ItHgG~~---s~~eal~~GvP~l~~P~~~---DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ 468 (518)
.++.+|.-.|.- .=+-|...=+|++++|.-. +..+----++ +.=-|+-+..- .-++..++.-|.. +
T Consensus 57 g~~viIAgAGgAAHLPGmvAa~T~lPViGVPv~s~~L~GlDSL~SiV-QMP~GvPVaTv----aIg~a~NAallAa---~ 128 (162)
T COG0041 57 GVKVIIAGAGGAAHLPGMVAAKTPLPVIGVPVQSKALSGLDSLLSIV-QMPAGVPVATV----AIGNAANAALLAA---Q 128 (162)
T ss_pred CCeEEEecCcchhhcchhhhhcCCCCeEeccCccccccchHHHHHHh-cCCCCCeeEEE----eecchhhHHHHHH---H
Confidence 234455544421 1223444578999999753 3333334444 55555533221 0012344444443 4
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHHHhc
Q 010093 469 IMVGDRAEEMRSRAKALGKMAKRAVEN 495 (518)
Q Consensus 469 ll~~~~~~~~~~~a~~l~~~~~~~~~~ 495 (518)
+|. -.|+.++++..++++..++.+.+
T Consensus 129 ILa-~~d~~l~~kl~~~r~~~~~~V~~ 154 (162)
T COG0041 129 ILA-IKDPELAEKLAEFREAQTEEVLE 154 (162)
T ss_pred HHc-CCCHHHHHHHHHHHHHHHHHHHh
Confidence 443 23779999999999999977655
No 433
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=24.80 E-value=1.6e+02 Score=21.91 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=27.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 010093 38 VFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 70 (518)
Q Consensus 38 Il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~ 70 (518)
+++...++.|-..-...+|..|++.|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456666688888999999999999999998876
No 434
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=24.78 E-value=1.9e+02 Score=25.94 Aligned_cols=39 Identities=18% Similarity=0.201 Sum_probs=27.7
Q ss_pred HHHHHHhhCCCCEEEecCCCc--cHHHHHHHcCCCeEEEec
Q 010093 138 PLEQLLQEHKPDCLVADTFFP--WATDAAAKFGIPRLVFHG 176 (518)
Q Consensus 138 ~l~~ll~~~~pDlVI~D~~~~--~~~~iA~~lgiP~v~~~~ 176 (518)
.+.+.++..++|.|+.=...- .+..+|..+|+|++.+.-
T Consensus 64 ~la~~~~~~~~d~I~g~~~~GiplA~~vA~~l~~p~v~vRK 104 (187)
T PRK13810 64 QAALRIKEMDVDTVAGVELGGVPLATAVSLETGLPLLIVRK 104 (187)
T ss_pred HHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEec
Confidence 344445556899999754333 678899999999987543
No 435
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=24.50 E-value=1.2e+02 Score=22.87 Aligned_cols=36 Identities=11% Similarity=0.162 Sum_probs=30.0
Q ss_pred EEEEEcCCCccChHHH-HHHHHHHHhCCCeEEEEeCC
Q 010093 37 HVFFFPFMAHGHMIPI-VDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~-l~LA~~L~~rGH~Vt~~~~~ 72 (518)
||+++|..+.|+-... ..|=+.+.++|.+++.....
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEec
Confidence 7899998888888888 88888889999887776654
No 436
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=24.48 E-value=65 Score=24.31 Aligned_cols=22 Identities=5% Similarity=0.223 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCCC
Q 010093 52 IVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 52 ~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
+..+.+.|.++||+|+-+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 4578999999999999887654
No 437
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=24.41 E-value=1.6e+02 Score=27.38 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=34.5
Q ss_pred EEEEc-CCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 010093 38 VFFFP-FMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYV 78 (518)
Q Consensus 38 Il~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 78 (518)
|.|++ -|+.|-..-.+.||.+|+++|-.|+++=.+++++..
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~ 45 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLA 45 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHH
Confidence 44554 469999999999999999999999999888877643
No 438
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=24.38 E-value=1.3e+02 Score=29.16 Aligned_cols=37 Identities=11% Similarity=-0.055 Sum_probs=27.7
Q ss_pred cEEEEEcCC-CccChH---HHHHHHHHHHhCCCeEEEEeCC
Q 010093 36 LHVFFFPFM-AHGHMI---PIVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 36 ~kIl~~~~~-~~GH~~---p~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
+||++++.+ +.=|-. -...+.++|.++||+|.++...
T Consensus 5 ~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 5 GKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred cEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 588877744 333433 5689999999999999998654
No 439
>PRK13054 lipid kinase; Reviewed
Probab=24.36 E-value=1.6e+02 Score=28.52 Aligned_cols=39 Identities=10% Similarity=-0.055 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
|+|++|+-.|..+...-...+.+.|.++|+++.+..++.
T Consensus 3 ~~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~ 41 (300)
T PRK13054 3 FPKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTWE 41 (300)
T ss_pred CceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEecC
Confidence 567777666765555667777888999999988776654
No 440
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=24.12 E-value=1.3e+02 Score=26.58 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=23.3
Q ss_pred HhhCCCCEEEecCCCcc-HHHHHHHcCCCeEEEec
Q 010093 143 LQEHKPDCLVADTFFPW-ATDAAAKFGIPRLVFHG 176 (518)
Q Consensus 143 l~~~~pDlVI~D~~~~~-~~~iA~~lgiP~v~~~~ 176 (518)
+.+.+||+||....... ...--++.|+|++.+..
T Consensus 56 l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~ 90 (195)
T cd01143 56 IVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPA 90 (195)
T ss_pred HhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCC
Confidence 44579999998754432 34455778999887643
No 441
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=24.08 E-value=1.5e+02 Score=24.94 Aligned_cols=43 Identities=7% Similarity=0.013 Sum_probs=36.8
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYV 78 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 78 (518)
.+|++-...+-+|..--.-++..|.+.|++|.......-.+.+
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~ 44 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEF 44 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 4899999999999999999999999999999999886544433
No 442
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=24.07 E-value=92 Score=22.42 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCCC
Q 010093 52 IVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 52 ~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
-+..|..|+++|++|+++=...
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHCCCcEEEEecCc
Confidence 3667899999999999986543
No 443
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=24.07 E-value=3.7e+02 Score=28.20 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=24.5
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeC
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATR--GVKASVITT 71 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~r--GH~Vt~~~~ 71 (518)
||||++-.+++.| +|+.+|++. |++|..+..
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEEC
Confidence 6899988888776 578888876 899887754
No 444
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.91 E-value=52 Score=31.33 Aligned_cols=28 Identities=18% Similarity=0.051 Sum_probs=22.7
Q ss_pred CcccccccCchhHHHHHH------hCCceecCCc
Q 010093 396 VGGFVTHCGWNSTLEAVA------AGVPLVTWPV 423 (518)
Q Consensus 396 ~~~~ItHgG~~s~~eal~------~GvP~l~~P~ 423 (518)
++++|+-||-||+..|+. .++|++++-.
T Consensus 36 ~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~ 69 (265)
T PRK04885 36 PDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHT 69 (265)
T ss_pred CCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeC
Confidence 456999999999999986 4778887653
No 445
>PHA02754 hypothetical protein; Provisional
Probab=23.90 E-value=1.5e+02 Score=20.55 Aligned_cols=22 Identities=5% Similarity=0.324 Sum_probs=17.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHH
Q 010093 466 VNEIMVGDRAEEMRSRAKALGKMAK 490 (518)
Q Consensus 466 v~~ll~~~~~~~~~~~a~~l~~~~~ 490 (518)
+.+++. +..|++..+++++++.
T Consensus 7 i~k~i~---eK~Fke~MRelkD~LS 28 (67)
T PHA02754 7 IPKAIM---EKDFKEAMRELKDILS 28 (67)
T ss_pred HHHHHH---HhHHHHHHHHHHHHHh
Confidence 345555 7799999999999988
No 446
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=23.84 E-value=1.2e+02 Score=19.93 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=17.9
Q ss_pred ChHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010093 458 KRETIEKAVNEIMVGDRAEEMRSRAKAL 485 (518)
Q Consensus 458 ~~~~l~~av~~ll~~~~~~~~~~~a~~l 485 (518)
+.+.|.+||..+..|.- ++++.|+..
T Consensus 1 tee~l~~Ai~~v~~g~~--S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKM--SIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTSS---HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCC--CHHHHHHHH
Confidence 46789999999987433 777777654
No 447
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=23.80 E-value=6.6e+02 Score=29.48 Aligned_cols=39 Identities=5% Similarity=0.026 Sum_probs=29.3
Q ss_pred CCcEEEEEcCCCc--cC----hHHHHHHHHHHHhCCCeEEEEeCC
Q 010093 34 PQLHVFFFPFMAH--GH----MIPIVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 34 ~~~kIl~~~~~~~--GH----~~p~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
...||+++-.+.. |+ -....+++++|.+.|++|.++.+.
T Consensus 6 ~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~n 50 (1068)
T PRK12815 6 DIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPN 50 (1068)
T ss_pred CCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCC
Confidence 3467888776642 43 336788999999999999998764
No 448
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=23.80 E-value=1.1e+02 Score=30.02 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
+|||.|+=.+..| ..+|..|+++||+|+++...
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 6799988666555 67899999999999998774
No 449
>PRK07586 hypothetical protein; Validated
Probab=23.74 E-value=2.5e+02 Score=29.67 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=19.4
Q ss_pred cccccccCch------hHHHHHHhCCceecCC
Q 010093 397 GGFVTHCGWN------STLEAVAAGVPLVTWP 422 (518)
Q Consensus 397 ~~~ItHgG~~------s~~eal~~GvP~l~~P 422 (518)
.+++.|.|-| .+.+|...++|||++.
T Consensus 66 gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~ 97 (514)
T PRK07586 66 AATLLHLGPGLANGLANLHNARRARTPIVNIV 97 (514)
T ss_pred EEEEecccHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3377777755 4457999999999875
No 450
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=23.72 E-value=1.9e+02 Score=31.09 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=21.6
Q ss_pred CcccccccCch------hHHHHHHhCCceecCC
Q 010093 396 VGGFVTHCGWN------STLEAVAAGVPLVTWP 422 (518)
Q Consensus 396 ~~~~ItHgG~~------s~~eal~~GvP~l~~P 422 (518)
..++++|.|-| .+.+|...++|||++-
T Consensus 68 ~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i~ 100 (574)
T PRK07979 68 VGVVLVTSGPGATNAITGIATAYMDSIPLVVLS 100 (574)
T ss_pred ceEEEECCCccHhhhHHHHHHHhhcCCCEEEEE
Confidence 44588887755 6789999999999984
No 451
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=23.71 E-value=77 Score=25.81 Aligned_cols=31 Identities=26% Similarity=0.331 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeCCCCccchh
Q 010093 49 MIPIVDMAKLFATRGVKASVITTPANAPYVS 79 (518)
Q Consensus 49 ~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 79 (518)
+.|+..|.-.+.-|||++|++-|..+.+.+.
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~~ 39 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYVD 39 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhcccc
Confidence 3456666666778999999999987766443
No 452
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=23.70 E-value=98 Score=28.38 Aligned_cols=37 Identities=27% Similarity=0.539 Sum_probs=26.8
Q ss_pred HHhhCCCCEEEecCCC--ccHHHHHHHcCCCeEEEecch
Q 010093 142 LLQEHKPDCLVADTFF--PWATDAAAKFGIPRLVFHGTS 178 (518)
Q Consensus 142 ll~~~~pDlVI~D~~~--~~~~~iA~~lgiP~v~~~~~~ 178 (518)
.+...+||+||..... .....-....+||++.+....
T Consensus 55 ~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 55 AILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp HHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred HHHhCCCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 3555799999988777 356667778899999987754
No 453
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=23.28 E-value=2.8e+02 Score=28.29 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=21.5
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEE
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATR-GVKASVI 69 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~r-GH~Vt~~ 69 (518)
|||+++-.++..| +|+++|++. |+.+.++
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~~~~~~~i~~ 30 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQSPLVEKVYV 30 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCCCEEEE
Confidence 5899998887776 599999886 4444444
No 454
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=23.17 E-value=1.3e+02 Score=28.54 Aligned_cols=33 Identities=18% Similarity=0.140 Sum_probs=29.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 010093 37 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVI 69 (518)
Q Consensus 37 kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~ 69 (518)
.|.|+--|+-|-..-...||-.|+++|++|.++
T Consensus 3 ~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlI 35 (274)
T PRK13235 3 KVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVV 35 (274)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 567777779999999999999999999999988
No 455
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=23.10 E-value=2.8e+02 Score=29.69 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=21.6
Q ss_pred CcccccccCch------hHHHHHHhCCceecCC
Q 010093 396 VGGFVTHCGWN------STLEAVAAGVPLVTWP 422 (518)
Q Consensus 396 ~~~~ItHgG~~------s~~eal~~GvP~l~~P 422 (518)
..++++|.|-| .+.+|...++|+|++.
T Consensus 68 ~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 68 VGCVLVTSGPGATNAITGIATAYTDSVPLVILS 100 (574)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 44488887754 6889999999999874
No 456
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=22.95 E-value=1.4e+02 Score=24.04 Aligned_cols=37 Identities=14% Similarity=-0.039 Sum_probs=31.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 010093 38 VFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 74 (518)
Q Consensus 38 Il~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 74 (518)
++....++-.|.....-++..|.++|++|.++.....
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~ 38 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVP 38 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCC
Confidence 4666777889999999999999999999999976543
No 457
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=22.91 E-value=1.5e+02 Score=22.52 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=27.0
Q ss_pred EEEEEcCCCc--cChHHHHHHHHHHHhCCCeEEEEe
Q 010093 37 HVFFFPFMAH--GHMIPIVDMAKLFATRGVKASVIT 70 (518)
Q Consensus 37 kIl~~~~~~~--GH~~p~l~LA~~L~~rGH~Vt~~~ 70 (518)
+|+++|.... .+..-...++..|.+.|..|.+-.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 6788887653 466678999999999999998754
No 458
>KOG4061 consensus DMQ mono-oxygenase/Ubiquinone biosynthesis protein COQ7/CLK-1/CAT5 [General function prediction only]
Probab=22.83 E-value=2.1e+02 Score=25.20 Aligned_cols=83 Identities=23% Similarity=0.262 Sum_probs=48.6
Q ss_pred CccHHHhhccCCCcccccccC------chhHHH-HHHhCC-ceecCCcccccchhHHHHHHhhhcceeeccccccccccC
Q 010093 384 WAPQVLILDHEAVGGFVTHCG------WNSTLE-AVAAGV-PLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGD 455 (518)
Q Consensus 384 ~~pq~~lL~~~~~~~~ItHgG------~~s~~e-al~~Gv-P~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~ 455 (518)
|.-|..+|++.+++-+|-|== ..+.-+ ++.+-| |.+..|+| |.+-- .+|+|..|--.
T Consensus 67 YaGQ~avL~~~~vgpvi~hmWdqEk~Hl~tf~~l~~k~rVrpT~l~P~w-----~vagf--alGaGTALlg~-------- 131 (217)
T KOG4061|consen 67 YAGQMAVLQGTSVGPVIKHMWDQEKEHLKTFENLALKHRVRPTVLTPLW-----NVAGF--ALGAGTALLGK-------- 131 (217)
T ss_pred hhchhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHccCCchhhhhHH-----HHHHH--HhccchhhhCh--------
Confidence 447899999988888877620 111111 133444 77888876 44444 36888887542
Q ss_pred ccChHHHHHHHHHHhcCChHHHHHHHH
Q 010093 456 FVKRETIEKAVNEIMVGDRAEEMRSRA 482 (518)
Q Consensus 456 ~~~~~~l~~av~~ll~~~~~~~~~~~a 482 (518)
-.+=.-..||..++.+.+|...|+-+
T Consensus 132 -eaAMACT~AVEtvIg~HYNdQlr~l~ 157 (217)
T KOG4061|consen 132 -EAAMACTEAVETVIGGHYNDQLRELA 157 (217)
T ss_pred -HHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34445566778888544444444433
No 459
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=22.70 E-value=93 Score=28.83 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhCCCeEEEEeC
Q 010093 51 PIVDMAKLFATRGVKASVITT 71 (518)
Q Consensus 51 p~l~LA~~L~~rGH~Vt~~~~ 71 (518)
--.+||++|+++|++|+++..
T Consensus 27 IG~AIA~~la~~Ga~Vvlv~~ 47 (227)
T TIGR02114 27 LGKIITETFLSAGHEVTLVTT 47 (227)
T ss_pred HHHHHHHHHHHCCCEEEEEcC
Confidence 357889999999999998753
No 460
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=22.69 E-value=1.5e+02 Score=30.71 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=33.2
Q ss_pred cEEEEEcCC---CccChHHHHHHHHHHHhCCCeEEEEeCCCCccc
Q 010093 36 LHVFFFPFM---AHGHMIPIVDMAKLFATRGVKASVITTPANAPY 77 (518)
Q Consensus 36 ~kIl~~~~~---~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~ 77 (518)
+|.+|++.+ +.|-=.-..+||..|.+||+.||+.=-+++.+.
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlNv 45 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLNV 45 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccceec
Confidence 367777765 566667889999999999999999977766543
No 461
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=22.57 E-value=1e+02 Score=29.15 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=28.3
Q ss_pred cEEEEEcCC---CccChHHHHHHHHHHHhCCCeEEEEeCCCCcc
Q 010093 36 LHVFFFPFM---AHGHMIPIVDMAKLFATRGVKASVITTPANAP 76 (518)
Q Consensus 36 ~kIl~~~~~---~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~ 76 (518)
+|..|++.+ +.|-=.-...|+.-|..||+.|+++=-+.+-+
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYlN 44 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYLN 44 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SSS
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccccc
Confidence 477777755 55666778999999999999999986665443
No 462
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=22.53 E-value=98 Score=29.90 Aligned_cols=31 Identities=10% Similarity=0.099 Sum_probs=24.6
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 71 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~ 71 (518)
|||+|+-.+..| ..+|..|++.||+|+++..
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEec
Confidence 478887666554 5678889999999999987
No 463
>PRK05246 glutathione synthetase; Provisional
Probab=22.40 E-value=1.2e+02 Score=29.55 Aligned_cols=40 Identities=13% Similarity=-0.095 Sum_probs=30.2
Q ss_pred cEEEEEcCC---CccChHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 010093 36 LHVFFFPFM---AHGHMIPIVDMAKLFATRGVKASVITTPANA 75 (518)
Q Consensus 36 ~kIl~~~~~---~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~ 75 (518)
|||+|+.-| -.-......+|+++..++||+|.++++.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~dl~ 44 (316)
T PRK05246 2 MKVAFQMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPDDLS 44 (316)
T ss_pred ceEEEEeCCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhhcE
Confidence 688877754 2233355688999999999999999997643
No 464
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=22.39 E-value=2.3e+02 Score=28.49 Aligned_cols=83 Identities=22% Similarity=0.200 Sum_probs=0.0
Q ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHH-------------HHHhcCCCcEeecCccH--
Q 010093 323 SLANFTSAQLMEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGF-------------EKRMEGKGLIIRGWAPQ-- 387 (518)
Q Consensus 323 S~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~-------------~~~~~~~nv~~~~~~pq-- 387 (518)
|+.......+..++++++..+..+...+..+. ....+ ......=.+++.+|+||
T Consensus 188 slF~Ye~~~l~~ll~~~~~~~~pv~llvp~g~-----------~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~ 256 (374)
T PF10093_consen 188 SLFCYENAALASLLDAWAASPKPVHLLVPEGR-----------ALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDD 256 (374)
T ss_pred EEEeCCchHHHHHHHHHhcCCCCeEEEecCCc-----------cHHHHHHHhccccccCccccccCCeEEEECCCCCHHH
Q ss_pred -HHhhccCCCcccccccCchhHHHHHHhCCcee
Q 010093 388 -VLILDHEAVGGFVTHCGWNSTLEAVAAGVPLV 419 (518)
Q Consensus 388 -~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l 419 (518)
+.+|-.+++ -+-. |=-|..-|..+|+|.|
T Consensus 257 yD~LLw~cD~--NfVR-GEDSfVRAqwAgkPFv 286 (374)
T PF10093_consen 257 YDRLLWACDF--NFVR-GEDSFVRAQWAGKPFV 286 (374)
T ss_pred HHHHHHhCcc--ceEe-cchHHHHHHHhCCCce
No 465
>PTZ00119 40S ribosomal protein S15; Provisional
Probab=22.36 E-value=1.7e+02 Score=27.68 Aligned_cols=60 Identities=12% Similarity=0.169 Sum_probs=42.2
Q ss_pred ccChHHHHHHHHHHhc--CCh-HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhhc
Q 010093 456 FVKRETIEKAVNEIMV--GDR-AEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEELRLSRH 515 (518)
Q Consensus 456 ~~~~~~l~~av~~ll~--~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 515 (518)
..+.+.+.++|.++|+ +.. .+..+.+-+++-+.++.....-||++-+++-|.+.+..+..
T Consensus 81 ~e~le~~~p~VkRILsLrNAs~kEi~K~rK~eIIkkfqr~~~DTGS~EVQIAiLTeRI~~LTe 143 (302)
T PTZ00119 81 YDDIKHLRKNIINMLHLNCANSKQIHKYKKLCIRRCLQRRPFDTGSAPVQIGCLTEKILNLRA 143 (302)
T ss_pred ccchhhhCHHHHHHhccccCChHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5688889999999986 211 13344444555666665556789999999999988886543
No 466
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.24 E-value=84 Score=30.44 Aligned_cols=55 Identities=9% Similarity=0.085 Sum_probs=0.0
Q ss_pred CCcccccccCchhHHHHHHh----CCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHh
Q 010093 395 AVGGFVTHCGWNSTLEAVAA----GVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIM 470 (518)
Q Consensus 395 ~~~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll 470 (518)
.++++|+=||-||+..|+.. ++|++++-. .+-..++ .++++++.+++.+++
T Consensus 63 ~~d~vi~lGGDGT~L~aa~~~~~~~~Pilgin~-----G~lGFl~--------------------~~~~~~~~~~l~~i~ 117 (292)
T PRK03378 63 QADLAIVVGGDGNMLGAARVLARYDIKVIGINR-----GNLGFLT--------------------DLDPDNALQQLSDVL 117 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCeEEEEEC-----CCCCccc--------------------ccCHHHHHHHHHHHH
Q ss_pred cCCh
Q 010093 471 VGDR 474 (518)
Q Consensus 471 ~~~~ 474 (518)
+|+.
T Consensus 118 ~g~~ 121 (292)
T PRK03378 118 EGHY 121 (292)
T ss_pred cCCc
No 467
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=22.13 E-value=7.1e+02 Score=23.96 Aligned_cols=114 Identities=13% Similarity=0.102 Sum_probs=70.3
Q ss_pred HHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCcc-HHHhhccCCCcccccccCchhHHHH
Q 010093 333 MEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAP-QVLILDHEAVGGFVTHCGWNSTLEA 411 (518)
Q Consensus 333 ~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~p-q~~lL~~~~~~~~ItHgG~~s~~ea 411 (518)
..+++.++..+..+++..+... .+|+.|....+.. .+. |..+| =.+.|.+.+..|
T Consensus 155 ~~~~~~l~~~~~Dlivlagy~~----------il~~~~l~~~~~~------iiNiHpSLL--------P~~rG~~~~~~a 210 (286)
T PRK13011 155 AQVLDVVEESGAELVVLARYMQ----------VLSPELCRKLAGR------AINIHHSFL--------PGFKGAKPYHQA 210 (286)
T ss_pred HHHHHHHHHhCcCEEEEeChhh----------hCCHHHHhhccCC------eEEeccccC--------CCCCCCcHHHHH
Confidence 3467778888888888877654 3777665443211 111 23344 234689999999
Q ss_pred HHhCCceecCCccc--ccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010093 412 VAAGVPLVTWPVAA--EQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDRAEEMRSRAKALG 486 (518)
Q Consensus 412 l~~GvP~l~~P~~~--DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~~~~~~~~a~~l~ 486 (518)
+.+|+..-++-.+. +..+-...+. .-.+.+.. ..|.++|.+.+.+ ++ -.-|-+..+.+.
T Consensus 211 i~~G~~~tG~TvH~v~~~~D~G~Ii~---Q~~v~I~~---------~dt~~~L~~r~~~-~E---~~~~~~ai~~~~ 271 (286)
T PRK13011 211 YERGVKLIGATAHYVTDDLDEGPIIE---QDVERVDH---------AYSPEDLVAKGRD-VE---CLTLARAVKAHI 271 (286)
T ss_pred HHCCCCeEEEEEEEEcCCCcCCCcEE---EEEEEcCC---------CCCHHHHHHHHHH-HH---HHHHHHHHHHHH
Confidence 99999998877532 3344444442 22344433 5799999999887 43 446655555544
No 468
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=22.10 E-value=8.1e+02 Score=24.58 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=26.0
Q ss_pred CcEEEEEc-CCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 010093 35 QLHVFFFP-FMAHGHMIPIVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 35 ~~kIl~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
+++|+++= .|..| ..+|+.|.++||+|+++...
T Consensus 98 ~~~I~IiGG~GlmG-----~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLG-----RLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhh-----HHHHHHHHHCCCeEEEeCCC
Confidence 46788875 56555 47899999999999999864
No 469
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.08 E-value=1.3e+02 Score=28.85 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=35.9
Q ss_pred CcccccccCchhHHHHHHh-CCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCC
Q 010093 396 VGGFVTHCGWNSTLEAVAA-GVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGD 473 (518)
Q Consensus 396 ~~~~ItHgG~~s~~eal~~-GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~ 473 (518)
++++|+=||-||+..|... ..|++++- ..++ |-- . +.+.+++.+++.++++|+
T Consensus 53 ~D~vi~lGGDGT~L~a~~~~~~PilGIN--------~G~l------GFL---~--------~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 53 ADVIITIGGDGTILRTLQRAKGPILGIN--------MGGL------GFL---T--------EIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCEEEEEcCcHHHHHHHHHcCCCEEEEE--------CCCC------ccC---c--------ccCHHHHHHHHHHHHcCC
Confidence 4569999999999999884 44655542 2222 211 2 467788888888888744
No 470
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=22.06 E-value=2.5e+02 Score=22.80 Aligned_cols=59 Identities=10% Similarity=0.018 Sum_probs=40.5
Q ss_pred CchhHHHHHHhCCceecCCcccccchhHHHHHHhhhcceeeccccccccccCccChHHHHHHHHHHhcCCh
Q 010093 404 GWNSTLEAVAAGVPLVTWPVAAEQFYNEKMVNEILKIGVGVGIQKWCRIVGDFVKRETIEKAVNEIMVGDR 474 (518)
Q Consensus 404 G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~~~~~~~~~l~~av~~ll~~~~ 474 (518)
++....+++ .|+-+|++--.+... ..++ ++.|+=+..... .-+-+++.+.+.++|.+.+
T Consensus 53 ~~~~~~~~l-~~c~vvi~~~IG~~a--~~~L-~~~gI~~~~~~~--------~~~v~eal~~l~~~~~~~~ 111 (119)
T TIGR02663 53 KIAPKIEAL-KDCAILYCLAIGGPA--AAKV-VAAKIHPIKVNE--------PESISELLERLQKMLKGNP 111 (119)
T ss_pred hHHHHHHHh-CCCcEEEEhhcCccH--HHHH-HHcCCeeEecCC--------CccHHHHHHHHHHHHcCCC
Confidence 444456666 799999999999887 4555 466666654332 3577888888888887444
No 471
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=21.98 E-value=7.4e+02 Score=24.08 Aligned_cols=99 Identities=16% Similarity=0.220 Sum_probs=56.3
Q ss_pred EEEEEcCCCcc---C--hHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCCCeEEEEeeCCCccCCCCCCCC
Q 010093 37 HVFFFPFMAHG---H--MIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIEMDVKTIKFPSVEAGLPEGCE 111 (518)
Q Consensus 37 kIl~~~~~~~G---H--~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~l~~~~~ 111 (518)
-|+|.|..+.| + .--+..|++.|.++|++|.+++.+...+....... . . +....
T Consensus 176 ~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~-----~-------~---------~~~~~ 234 (334)
T TIGR02195 176 IIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEA-----L-------L---------PGELR 234 (334)
T ss_pred EEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHH-----h-------C---------Ccccc
Confidence 45666654333 1 22577899999888999888887654443322200 0 0 00000
Q ss_pred ccccccchhhhhhHHHHHHHHHhhHHHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEecc
Q 010093 112 NLDAITNEVNKGLIVKFFGATMKLQEPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFHGT 177 (518)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~~~ 177 (518)
.... .....++..+++ +-|++|+.- ....-+|.-+|+|+|.++..
T Consensus 235 ~l~g-----------------~~sL~el~ali~--~a~l~I~~D--SGp~HlAaA~~~P~i~lfG~ 279 (334)
T TIGR02195 235 NLAG-----------------ETSLDEAVDLIA--LAKAVVTND--SGLMHVAAALNRPLVALYGS 279 (334)
T ss_pred cCCC-----------------CCCHHHHHHHHH--hCCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 0000 001234555555 679999763 34677899999999987653
No 472
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=21.95 E-value=2.2e+02 Score=22.42 Aligned_cols=37 Identities=16% Similarity=0.056 Sum_probs=29.2
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
+||+++|.++.+--.-.-.+=+.+.++|.++.+....
T Consensus 1 ~~Ill~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~ 37 (99)
T cd05565 1 LNVLVLCAGGGTSGLLANALNKGAKERGVPLEAAAGA 37 (99)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEee
Confidence 4799999878888888888888888899888766543
No 473
>PRK06835 DNA replication protein DnaC; Validated
Probab=21.93 E-value=85 Score=31.01 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=34.6
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYV 78 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 78 (518)
..++|+-.++.|=..-..+||++|.++|+.|.+++.......+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 4577777778888888999999999999999999887644433
No 474
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=21.90 E-value=71 Score=31.05 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=29.8
Q ss_pred hhccCCCcccccccCchhHHHHHH----hCCceecCCccccc
Q 010093 390 ILDHEAVGGFVTHCGWNSTLEAVA----AGVPLVTWPVAAEQ 427 (518)
Q Consensus 390 lL~~~~~~~~ItHgG~~s~~eal~----~GvP~l~~P~~~DQ 427 (518)
-|..-+++++|.=||-+|...|.. +|+|++++|..-|-
T Consensus 86 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDN 127 (301)
T TIGR02482 86 NLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDN 127 (301)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccC
Confidence 344567888999999999877753 79999999975543
No 475
>CHL00194 ycf39 Ycf39; Provisional
Probab=21.86 E-value=1.6e+02 Score=28.70 Aligned_cols=33 Identities=9% Similarity=0.140 Sum_probs=23.8
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
|||++. |+.|. --..|+++|.++||+|+.++-.
T Consensus 1 MkIlVt--GatG~--iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLVI--GATGT--LGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CEEEEE--CCCcH--HHHHHHHHHHHCCCeEEEEEcC
Confidence 356553 44553 4567899999999999988754
No 476
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=21.77 E-value=1.2e+02 Score=29.22 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=25.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
+||.|+=.+..| .++|+.|.++||+|++..-..
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~~ 33 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRTP 33 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCCh
Confidence 367776655544 689999999999999987653
No 477
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.72 E-value=2.1e+02 Score=30.67 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=21.8
Q ss_pred CcccccccCch------hHHHHHHhCCceecCC
Q 010093 396 VGGFVTHCGWN------STLEAVAAGVPLVTWP 422 (518)
Q Consensus 396 ~~~~ItHgG~~------s~~eal~~GvP~l~~P 422 (518)
..++++|.|-| .+.+|...++|||++-
T Consensus 68 ~gv~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~ 100 (574)
T PRK06466 68 TGVVLVTSGPGATNAITGIATAYMDSIPMVVLS 100 (574)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 44488887744 7899999999999984
No 478
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=21.63 E-value=1.3e+02 Score=22.25 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCC
Q 010093 50 IPIVDMAKLFATRGVKASVITTPAN 74 (518)
Q Consensus 50 ~p~l~LA~~L~~rGH~Vt~~~~~~~ 74 (518)
.--+.+|..|+++|.+||++...+.
T Consensus 9 ~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 9 FIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHHHHhCcEEEEEeccch
Confidence 3457899999999999999987654
No 479
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=21.61 E-value=62 Score=30.40 Aligned_cols=28 Identities=18% Similarity=0.137 Sum_probs=22.4
Q ss_pred CcccccccCchhHHHHHHh----CCceecCCc
Q 010093 396 VGGFVTHCGWNSTLEAVAA----GVPLVTWPV 423 (518)
Q Consensus 396 ~~~~ItHgG~~s~~eal~~----GvP~l~~P~ 423 (518)
++++|+-||-||+..|+.. ++|++++-.
T Consensus 26 ~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 26 ADVIVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 4569999999999988665 678887653
No 480
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=21.57 E-value=89 Score=32.47 Aligned_cols=34 Identities=26% Similarity=0.547 Sum_probs=26.0
Q ss_pred HHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEE
Q 010093 138 PLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVF 174 (518)
Q Consensus 138 ~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~ 174 (518)
++.+.+++.+||++|.... ...+|+++|||++.+
T Consensus 386 e~~~~i~~~~pDllig~~~---~~~~a~k~gip~~~~ 419 (457)
T TIGR01284 386 ELEEIIEKYKPDIILTGIR---EGELAKKLGVPYINI 419 (457)
T ss_pred HHHHHHHhcCCCEEEecCC---cchhhhhcCCCEEEc
Confidence 4555667789999998853 456899999999875
No 481
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.55 E-value=2.7e+02 Score=29.97 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=21.5
Q ss_pred CcccccccCch------hHHHHHHhCCceecCC
Q 010093 396 VGGFVTHCGWN------STLEAVAAGVPLVTWP 422 (518)
Q Consensus 396 ~~~~ItHgG~~------s~~eal~~GvP~l~~P 422 (518)
..++++|.|-| .+.+|...++|||++.
T Consensus 85 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 117 (587)
T PRK06965 85 VGVALVTSGPGVTNAVTGIATAYMDSIPMVVIS 117 (587)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 44588887744 6889999999999985
No 482
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=21.49 E-value=2e+02 Score=27.50 Aligned_cols=61 Identities=18% Similarity=0.164 Sum_probs=33.9
Q ss_pred cceEEEcCCCcchHHhhhhccC-CCCCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 8 NNKVAFTNNSSLSSYLIRKLNM-GSEIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~m-~~~~~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
++.+-.|||.| +-..+.|.- ..+.+..+|.+.-.-. .+--..+|++|.+.|..||+++...
T Consensus 109 ~g~~ILTh~~S--~tv~~~l~~A~~~gk~~~V~v~EsrP---~~qG~~la~eL~~~GI~vtlI~Dsa 170 (275)
T PRK08335 109 DGDVIITHSFS--SAVLEILKTAKRKGKRFKVILTESAP---DYEGLALANELEFLGIEFEVITDAQ 170 (275)
T ss_pred CCCEEEEECCc--HHHHHHHHHHHHcCCceEEEEecCCC---chhHHHHHHHHHHCCCCEEEEeccH
Confidence 56677888855 222222221 1112345554332221 1334567999999999999888754
No 483
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=21.31 E-value=2.5e+02 Score=30.07 Aligned_cols=80 Identities=18% Similarity=0.133 Sum_probs=43.4
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCc--------cHHHhhccCCCccccccc
Q 010093 332 LMEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWA--------PQVLILDHEAVGGFVTHC 403 (518)
Q Consensus 332 ~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~--------pq~~lL~~~~~~~~ItHg 403 (518)
-+.+++.|++.|.+.++-+++.. .+| -+....+.+++.++... -...-.......+++.|.
T Consensus 12 a~~l~~~L~~~GV~~vFgvpG~~----------~~~-l~~~l~~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~v~~vt~ 80 (568)
T PRK07449 12 AAVILEELTRLGVRHVVIAPGSR----------STP-LTLAAAEHPRLRLHTHFDERSAGFLALGLAKASKRPVAVIVTS 80 (568)
T ss_pred HHHHHHHHHHcCCCEEEECCCCc----------cHH-HHHHHHhCCCcEEEeecCcccHHHHHHHHHHhhCCCEEEEECC
Confidence 34567777777777777776654 022 11111112233333221 111111112233477777
Q ss_pred Cc------hhHHHHHHhCCceecCC
Q 010093 404 GW------NSTLEAVAAGVPLVTWP 422 (518)
Q Consensus 404 G~------~s~~eal~~GvP~l~~P 422 (518)
|- +.+.||-..++|||++.
T Consensus 81 GpG~~N~l~~i~~A~~~~~Pvl~Is 105 (568)
T PRK07449 81 GTAVANLYPAVIEAGLTGVPLIVLT 105 (568)
T ss_pred ccHHHhhhHHHHHHhhcCCcEEEEE
Confidence 74 48899999999999984
No 484
>PRK08939 primosomal protein DnaI; Reviewed
Probab=21.30 E-value=86 Score=30.58 Aligned_cols=44 Identities=14% Similarity=0.280 Sum_probs=35.2
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCccchh
Q 010093 36 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVS 79 (518)
Q Consensus 36 ~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 79 (518)
..++|.-.++.|=..-+.+||.+|.++|+.|+|+..+.+...+.
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk 200 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELK 200 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHH
Confidence 35777777788888889999999999999999998875544443
No 485
>PLN02735 carbamoyl-phosphate synthase
Probab=21.30 E-value=5.8e+02 Score=30.03 Aligned_cols=39 Identities=10% Similarity=0.132 Sum_probs=29.7
Q ss_pred CcEEEEEcCCC--ccCh----HHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 35 QLHVFFFPFMA--HGHM----IPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 35 ~~kIl~~~~~~--~GH~----~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
+.||+++-.+. .|+. ....+++++|.+.|++|..+.+..
T Consensus 23 ~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np 67 (1102)
T PLN02735 23 LKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNP 67 (1102)
T ss_pred CCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCc
Confidence 46888887664 3432 557899999999999999887653
No 486
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=21.22 E-value=1e+02 Score=31.81 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=25.1
Q ss_pred HHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEE
Q 010093 138 PLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVF 174 (518)
Q Consensus 138 ~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~ 174 (518)
++.+.+++.+||++|... .+..+|+++|||++.+
T Consensus 378 e~~~~i~~~~pdllig~s---~~~~~A~~lgip~~~~ 411 (443)
T TIGR01862 378 EFEEILEKLKPDIIFSGI---KEKFVAQKLGVPYRQM 411 (443)
T ss_pred HHHHHHHhcCCCEEEEcC---cchhhhhhcCCCeEec
Confidence 334445667899999875 3466899999999874
No 487
>PRK06932 glycerate dehydrogenase; Provisional
Probab=21.21 E-value=3.8e+02 Score=26.20 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=40.1
Q ss_pred CCcEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCCCCCChhHHHHHhcCCCcEeecCccHHHhhc
Q 010093 313 PYSVVYVCFGSLANFTSAQLMEIATGLEASGRNFIWVVSKNKNDGGEGGNEDWLPEGFEKRMEGKGLIIRGWAPQVLILD 392 (518)
Q Consensus 313 ~~~vIyvslGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~lL~ 392 (518)
.+.+-.+.+|.+. +.+++.++.++.+++.. .... .. .. ...+.+..++|+
T Consensus 147 gktvgIiG~G~IG-------~~va~~l~~fg~~V~~~-~~~~------------~~---------~~-~~~~~~l~ell~ 196 (314)
T PRK06932 147 GSTLGVFGKGCLG-------TEVGRLAQALGMKVLYA-EHKG------------AS---------VC-REGYTPFEEVLK 196 (314)
T ss_pred CCEEEEECCCHHH-------HHHHHHHhcCCCEEEEE-CCCc------------cc---------cc-ccccCCHHHHHH
Confidence 4568899999987 45666677788887653 2111 00 01 123567889998
Q ss_pred cCCCcccccccCch
Q 010093 393 HEAVGGFVTHCGWN 406 (518)
Q Consensus 393 ~~~~~~~ItHgG~~ 406 (518)
.+++ ++-|+-.+
T Consensus 197 ~sDi--v~l~~Plt 208 (314)
T PRK06932 197 QADI--VTLHCPLT 208 (314)
T ss_pred hCCE--EEEcCCCC
Confidence 8666 88887654
No 488
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=20.93 E-value=3.1e+02 Score=24.22 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 010093 459 RETIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSA 505 (518)
Q Consensus 459 ~~~l~~av~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~ 505 (518)
.++-.+.+++-|++-+.++..+......+.+.++.++|-+-+..+++
T Consensus 3 k~efL~~L~~~L~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~ 49 (181)
T PF08006_consen 3 KNEFLNELEKYLKKLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAE 49 (181)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHH
Confidence 34444444444442335677888888888888776665554444433
No 489
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=20.89 E-value=2.2e+02 Score=26.66 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=25.7
Q ss_pred HHHHHhhCCCCEEEecC--CCccHHHHHHHcCCCeEEE
Q 010093 139 LEQLLQEHKPDCLVADT--FFPWATDAAAKFGIPRLVF 174 (518)
Q Consensus 139 l~~ll~~~~pDlVI~D~--~~~~~~~iA~~lgiP~v~~ 174 (518)
+.+.+...++|+|++=. -.+.+..+|..+|+|++..
T Consensus 103 la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~ 140 (238)
T PRK08558 103 VAERFMGLRVDVVLTAATDGIPLAVAIASYFGADLVYA 140 (238)
T ss_pred HHHHccCCCCCEEEEECcccHHHHHHHHHHHCcCEEEE
Confidence 33334456799999653 2337888999999999875
No 490
>PRK05993 short chain dehydrogenase; Provisional
Probab=20.85 E-value=1.7e+02 Score=27.67 Aligned_cols=35 Identities=6% Similarity=-0.093 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
|.|.+++..++ | .--..+|+.|+++|++|..+...
T Consensus 3 ~~k~vlItGas-g--giG~~la~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 3 MKRSILITGCS-S--GIGAYCARALQSDGWRVFATCRK 37 (277)
T ss_pred CCCEEEEeCCC-c--HHHHHHHHHHHHCCCEEEEEECC
Confidence 34555555443 3 23467899999999999887653
No 491
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=20.85 E-value=9.7e+02 Score=25.02 Aligned_cols=28 Identities=14% Similarity=0.364 Sum_probs=24.0
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeCC
Q 010093 45 AHGHMIPIVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 45 ~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
.-|-..-...|++.|+++|.+|..+=+.
T Consensus 9 ~vGKT~v~~~L~~~l~~~G~~v~~fKp~ 36 (475)
T TIGR00313 9 SAGKSTLTAGLCRILARRGYRVAPFKSQ 36 (475)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 4677788999999999999999987664
No 492
>PRK06703 flavodoxin; Provisional
Probab=20.82 E-value=1.6e+02 Score=24.91 Aligned_cols=38 Identities=5% Similarity=-0.088 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCccChHHH-HHHHHHHHhCCCeEEEEeCC
Q 010093 35 QLHVFFFPFMAHGHMIPI-VDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~-l~LA~~L~~rGH~Vt~~~~~ 72 (518)
|||++++=....|+.--+ ..|++.|...|++|.+.-..
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~ 39 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMD 39 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehh
Confidence 456655555566777664 46678888899999887553
No 493
>PRK10490 sensor protein KdpD; Provisional
Probab=20.70 E-value=1.4e+02 Score=34.04 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=37.0
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 010093 34 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 74 (518)
Q Consensus 34 ~~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 74 (518)
-++||.+=..|+-|-.+.|+.-|++|.++|++|.+..-+..
T Consensus 23 g~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e~h 63 (895)
T PRK10490 23 GKLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVETH 63 (895)
T ss_pred CcEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEeeCC
Confidence 46899999999999999999999999999999998766644
No 494
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=20.65 E-value=1.2e+02 Score=29.17 Aligned_cols=33 Identities=15% Similarity=0.034 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 72 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~ 72 (518)
..||.++=.+..| ..+|..|+++||+|+++...
T Consensus 3 ~~kIaViGaG~mG-----~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 3 IKNVTVAGAGVLG-----SQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred ccEEEEECCCHHH-----HHHHHHHHhcCCeEEEEeCC
Confidence 4588888666655 66889999999999999764
No 495
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.61 E-value=1.7e+02 Score=28.60 Aligned_cols=39 Identities=15% Similarity=0.073 Sum_probs=28.8
Q ss_pred CCCcEEEEEcCCCccChHH-HHHHHHHHHhCCCeEEEEeC
Q 010093 33 IPQLHVFFFPFMAHGHMIP-IVDMAKLFATRGVKASVITT 71 (518)
Q Consensus 33 ~~~~kIl~~~~~~~GH~~p-~l~LA~~L~~rGH~Vt~~~~ 71 (518)
|++.||+|+..+..++... +..+.+.|.++|++|.+...
T Consensus 1 ~~~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~ 40 (305)
T PRK02645 1 MQLKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPS 40 (305)
T ss_pred CCcCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecC
Confidence 4677899999887666544 45556678889999887654
No 496
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=20.59 E-value=1.9e+02 Score=24.96 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=33.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
|++|.|+-.-......-...|++.-.++|++|.+.+...
T Consensus 1 ~~~v~FYhL~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~ 39 (154)
T PRK06646 1 MQQFSIYQTSDELLLKSILLLIEKCYYSDLKSVILTADA 39 (154)
T ss_pred CCeeEEEEeCCChHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 567888888888888889999999999999999998654
No 497
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=20.58 E-value=4e+02 Score=27.17 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 010093 35 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 74 (518)
Q Consensus 35 ~~kIl~~~~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~~ 74 (518)
..|++++.-+ .-..++++.|.+-|-+|..++++..
T Consensus 274 Gkrv~i~gd~-----~~~~~l~~~L~elGm~~v~~~t~~~ 308 (407)
T TIGR01279 274 GKKIFFFGDN-----LLELPLARFLKRCGMEVVECGTPYI 308 (407)
T ss_pred CCEEEEECCc-----hHHHHHHHHHHHCCCEEEEecCCCC
Confidence 3577775433 4567778888888999887777543
No 498
>PRK10818 cell division inhibitor MinD; Provisional
Probab=20.47 E-value=1.5e+02 Score=27.95 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=31.1
Q ss_pred CcEEE-EEc-CCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 010093 35 QLHVF-FFP-FMAHGHMIPIVDMAKLFATRGVKASVITTPA 73 (518)
Q Consensus 35 ~~kIl-~~~-~~~~GH~~p~l~LA~~L~~rGH~Vt~~~~~~ 73 (518)
|+||+ |+. -++-|-......||..|+++|++|.++=.+.
T Consensus 1 m~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~ 41 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDI 41 (270)
T ss_pred CceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 34643 443 6799999999999999999999998886654
No 499
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=20.45 E-value=68 Score=33.43 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=27.9
Q ss_pred HHHHHHHhhCCCCEEEecCCCccHHHHHHHcCCCeEEEe
Q 010093 137 EPLEQLLQEHKPDCLVADTFFPWATDAAAKFGIPRLVFH 175 (518)
Q Consensus 137 ~~l~~ll~~~~pDlVI~D~~~~~~~~iA~~lgiP~v~~~ 175 (518)
.++.+++++.+||++|.... ...+|+++|||++.+.
T Consensus 394 ~el~~~i~~~~pDl~ig~~~---~~~~a~k~gIP~~~~~ 429 (466)
T TIGR01282 394 YEFEEFVEKLKPDLVGSGIK---EKYVFQKMGVPFRQMH 429 (466)
T ss_pred HHHHHHHHHhCCCEEEecCC---ccceeeecCCCccccc
Confidence 46677777889999998864 3568999999986543
No 500
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=20.38 E-value=1.5e+02 Score=26.84 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=25.1
Q ss_pred CCCCEEEe-cCCCc-cHHHHHHHcCCCeEEEecc
Q 010093 146 HKPDCLVA-DTFFP-WATDAAAKFGIPRLVFHGT 177 (518)
Q Consensus 146 ~~pDlVI~-D~~~~-~~~~iA~~lgiP~v~~~~~ 177 (518)
..||+||+ |+... -+..=|.++|||+|.+.-+
T Consensus 107 ~~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DT 140 (196)
T TIGR01012 107 REPEVVVVTDPRADHQALKEASEVGIPIVALCDT 140 (196)
T ss_pred CCCCEEEEECCccccHHHHHHHHcCCCEEEEeeC
Confidence 46888874 55444 6888899999999998765
Done!