Query 010094
Match_columns 518
No_of_seqs 229 out of 1647
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 20:59:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14479 dihydroxyacetone kina 100.0 3E-145 5E-150 1184.0 56.1 498 1-512 67-567 (568)
2 KOG2426 Dihydroxyacetone kinas 100.0 6E-146 1E-150 1127.2 45.7 497 1-512 71-581 (582)
3 PTZ00375 dihydroxyacetone kina 100.0 7E-144 2E-148 1170.1 54.5 496 1-510 70-582 (584)
4 TIGR02361 dak_ATP dihydroxyace 100.0 3E-142 6E-147 1161.3 54.3 496 1-508 66-574 (574)
5 PRK14481 dihydroxyacetone kina 100.0 4E-101 9E-106 784.3 29.7 262 1-267 68-330 (331)
6 TIGR02363 dhaK1 dihydroxyaceto 100.0 6E-101 1E-105 782.6 29.4 260 1-265 69-329 (329)
7 TIGR02362 dhaK1b probable dihy 100.0 1E-100 3E-105 779.3 29.3 260 1-265 65-326 (326)
8 PRK11468 dihydroxyacetone kina 100.0 2E-100 4E-105 782.2 29.9 266 1-268 68-355 (356)
9 PRK14483 DhaKLM operon coactiv 100.0 2E-100 4E-105 778.3 29.3 260 1-265 67-329 (329)
10 PF02733 Dak1: Dak1 domain; I 100.0 1E-101 3E-106 788.6 20.3 267 1-268 52-325 (325)
11 COG2376 DAK1 Dihydroxyacetone 100.0 3.2E-75 7E-80 592.0 22.4 256 1-265 67-323 (323)
12 PRK10005 dihydroxyacetone kina 100.0 2.9E-53 6.3E-58 412.8 24.2 206 303-512 4-209 (210)
13 TIGR02365 dha_L_ycgS dihydroxy 100.0 1.7E-50 3.7E-55 389.4 22.6 192 308-507 2-193 (194)
14 PF02734 Dak2: DAK2 domain; I 100.0 1.9E-45 4.1E-50 349.0 17.4 175 331-509 1-175 (175)
15 TIGR03599 YloV DAK2 domain fus 100.0 5.6E-37 1.2E-41 333.8 23.4 195 307-514 1-196 (530)
16 COG1461 Predicted kinase relat 100.0 5.7E-29 1.2E-33 266.2 17.1 202 302-516 5-207 (542)
17 COG2376 DAK1 Dihydroxyacetone 99.9 4.7E-22 1E-26 203.3 6.4 202 311-515 27-237 (323)
18 TIGR03599 YloV DAK2 domain fus 87.4 26 0.00056 39.4 17.0 179 4-230 337-519 (530)
19 PRK11377 dihydroxyacetone kina 84.1 11 0.00024 41.7 11.9 176 15-221 48-240 (473)
20 TIGR02364 dha_pts dihydroxyace 75.1 15 0.00032 33.4 7.8 79 15-113 44-124 (125)
21 PRK09314 bifunctional 3,4-dihy 70.8 5.1 0.00011 42.4 4.3 55 4-59 252-310 (339)
22 PF00925 GTP_cyclohydro2: GTP 63.6 5.1 0.00011 38.1 2.3 62 4-66 51-147 (169)
23 PRK12485 bifunctional 3,4-dihy 59.3 10 0.00022 40.6 3.9 59 4-62 256-344 (369)
24 cd00641 GTP_cyclohydro2 GTP cy 58.3 15 0.00034 35.5 4.7 34 4-37 52-89 (193)
25 PRK14484 phosphotransferase ma 57.4 19 0.00041 32.8 4.7 77 15-113 44-120 (124)
26 PRK00393 ribA GTP cyclohydrola 56.5 15 0.00033 35.7 4.3 35 4-38 53-91 (197)
27 TIGR00505 ribA GTP cyclohydrol 53.0 19 0.00042 34.9 4.4 34 4-37 50-87 (191)
28 TIGR02365 dha_L_ycgS dihydroxy 51.6 2.2E+02 0.0047 27.6 11.5 129 304-452 32-160 (194)
29 PTZ00450 macrophage migration 49.8 27 0.00059 31.1 4.5 40 191-230 60-99 (113)
30 PF13684 Dak1_2: Dihydroxyacet 48.2 3.5E+02 0.0075 28.3 17.2 174 4-225 119-297 (313)
31 PTZ00375 dihydroxyacetone kina 47.9 1.5E+02 0.0032 34.0 10.8 112 335-448 430-542 (584)
32 PLN02831 Bifunctional GTP cycl 46.9 18 0.00039 39.8 3.5 39 3-41 290-332 (450)
33 PF02645 DegV: Uncharacterised 46.8 65 0.0014 32.8 7.3 185 12-235 61-266 (280)
34 PRK10005 dihydroxyacetone kina 46.0 2.4E+02 0.0053 27.8 10.9 110 334-448 58-167 (210)
35 PTZ00397 macrophage migration 44.9 41 0.00089 29.5 4.8 41 190-230 59-99 (116)
36 PRK08815 GTP cyclohydrolase; P 44.7 18 0.0004 38.9 3.0 38 4-42 224-265 (375)
37 TIGR00762 DegV EDD domain prot 42.4 96 0.0021 31.5 7.7 95 12-122 60-157 (275)
38 PRK09311 bifunctional 3,4-dihy 41.2 33 0.00071 37.3 4.3 34 4-37 257-294 (402)
39 PRK14019 bifunctional 3,4-dihy 41.1 30 0.00065 37.1 3.9 56 4-59 256-337 (367)
40 cd00615 Orn_deC_like Ornithine 40.8 64 0.0014 32.7 6.2 55 12-70 138-192 (294)
41 COG1416 Uncharacterized conser 40.5 56 0.0012 29.3 4.9 71 164-241 13-83 (112)
42 PF00975 Thioesterase: Thioest 35.9 62 0.0013 30.8 5.0 75 145-235 31-106 (229)
43 PLN03065 isocitrate dehydrogen 34.6 2.7E+02 0.0059 31.1 10.0 135 22-175 324-474 (483)
44 COG4175 ProV ABC-type proline/ 34.1 56 0.0012 34.8 4.5 119 89-249 10-137 (386)
45 COG1732 OpuBC Periplasmic glyc 33.4 69 0.0015 33.5 5.0 85 121-237 15-99 (300)
46 PF02955 GSH-S_ATP: Prokaryoti 32.9 82 0.0018 30.2 5.1 83 150-237 42-159 (173)
47 PRK05340 UDP-2,3-diacylglucosa 31.6 53 0.0011 32.5 3.8 36 5-40 37-81 (241)
48 COG3412 Uncharacterized protei 30.3 80 0.0017 28.9 4.3 80 14-112 44-123 (129)
49 PRK09318 bifunctional 3,4-dihy 29.9 40 0.00087 36.4 2.7 39 3-42 239-280 (387)
50 PF02633 Creatininase: Creatin 29.5 2.5E+02 0.0055 27.7 8.2 61 151-225 72-133 (237)
51 PF01187 MIF: Macrophage migra 29.2 53 0.0011 28.9 3.0 40 191-230 58-97 (114)
52 PF11887 DUF3407: Protein of u 29.0 3.3E+02 0.0072 27.7 9.1 100 358-468 12-111 (267)
53 PF03793 PASTA: PASTA domain; 27.6 1E+02 0.0022 23.6 4.0 30 34-65 1-30 (63)
54 PF09548 Spore_III_AB: Stage I 25.7 5.7E+02 0.012 24.1 10.4 72 356-443 46-117 (170)
55 KOG1526 NADP-dependent isocitr 25.6 47 0.001 34.8 2.2 47 24-71 267-313 (422)
56 PF02734 Dak2: DAK2 domain; I 25.4 2E+02 0.0043 27.3 6.4 110 333-448 27-136 (175)
57 PF08353 DUF1727: Domain of un 25.3 81 0.0018 28.1 3.4 33 9-41 80-112 (113)
58 COG0616 SppA Periplasmic serin 24.8 2.4E+02 0.0052 29.5 7.4 61 165-237 83-143 (317)
59 PF02873 MurB_C: UDP-N-acetyle 24.5 1E+02 0.0022 27.2 3.8 34 192-226 66-99 (105)
60 PRK09319 bifunctional 3,4-dihy 24.2 71 0.0015 36.2 3.5 38 3-41 261-302 (555)
61 COG1307 DegV Uncharacterized p 24.2 6.1E+02 0.013 26.1 10.1 203 14-246 64-279 (282)
62 TIGR01854 lipid_A_lpxH UDP-2,3 23.3 98 0.0021 30.4 4.0 37 5-41 35-80 (231)
63 PRK14479 dihydroxyacetone kina 22.2 9.4E+02 0.02 27.5 11.8 117 335-456 417-533 (568)
64 TIGR01753 flav_short flavodoxi 21.6 4.7E+02 0.01 22.7 7.8 102 107-225 13-114 (140)
65 cd03465 URO-D_like The URO-D _ 21.4 2E+02 0.0044 29.4 6.0 106 12-132 206-315 (330)
66 KOG3439 Protein conjugation fa 21.3 89 0.0019 28.0 2.8 26 13-40 85-110 (116)
67 TIGR00619 sbcd exonuclease Sbc 21.2 3.3E+02 0.0071 27.3 7.3 54 5-60 44-105 (253)
68 PRK11340 phosphodiesterase Yae 21.1 1.8E+02 0.0038 29.5 5.4 55 5-59 85-144 (271)
69 PRK07198 hypothetical protein; 20.5 1.4E+02 0.0031 32.5 4.6 38 3-41 246-291 (418)
70 cd07385 MPP_YkuE_C Bacillus su 20.2 2.1E+02 0.0045 27.3 5.5 54 5-58 37-92 (223)
No 1
>PRK14479 dihydroxyacetone kinase; Provisional
Probab=100.00 E-value=2.5e-145 Score=1184.05 Aligned_cols=498 Identities=41% Similarity=0.607 Sum_probs=454.9
Q ss_pred CccccccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 010094 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (518)
Q Consensus 1 mL~aav~G~vFaSP~~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~g~~v~~v~v~DDva~~~~~~~~gR 80 (518)
|||||||||||||||++||++|||+|++++|||||||||||||||||||+|+|+++||+|++|+|+||||+.++.+++||
T Consensus 67 ml~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnF~~A~e~a~~~g~~v~~v~v~DDva~~~~~~~~~R 146 (568)
T PRK14479 67 MLDAAVCGNVFTSPSADQVYAAIRAADGGAGVLLIVGNYAGDVMNFGLAAELARAEGIDVRTVVVTDDVASAPSGETAGR 146 (568)
T ss_pred ccceeeccCccCCCCHHHHHHHHHhccCCCCEEEEeCCcHHHHhhHHHHHHHHHhcCCcEEEEEeCCcccCCCCCcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999655568899
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCC-CCCCCCcCCCceeEeccccCCCCccccc
Q 010094 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (518)
Q Consensus 81 RG~aG~v~v~KiaGa~A~~G~~l~ev~~~~~~~~~~~~t~gval~~c~~P~-~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (518)
||+|||||||||+||+|++|+||+||++++++++++++||||+|++||+|| ++|.|+|++||||||||||||||++|.+
T Consensus 147 RG~AG~v~v~KiaGAaA~~G~~L~ev~~~~~~~~~~~~tigval~~c~~P~~~~~~f~l~~~e~E~G~GiHgEpG~~~~~ 226 (568)
T PRK14479 147 RGIAGTVLVFKIAGAAAEAGLDLDEVAAIARKANARTRSMGVALDGCTLPGAGEPLFTLPEGEMELGLGIHGEPGIEREA 226 (568)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeeeccCcccCCCCCCCCcCCCCeeEeccccCCCCceeecC
Confidence 999999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCC
Q 010094 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (518)
Q Consensus 160 ~~~a~~~v~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSl~m~ 239 (518)
+.++++++++|+++|+++ ++++++|+|+|||||||+||+|||||+++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 227 ~~~a~~~~~~~~~~l~~~----~~~~~~d~v~~lvN~lG~t~~~El~i~~~~~~~~l~~~-~i~v~~~~vG~~~Tsldm~ 301 (568)
T PRK14479 227 LPTADELADRLVDRILAD----LPLGAGERVAVLVNGLGATPYEELFVVYGAVARLLAAR-GITVVRPEVGEFVTSLDMA 301 (568)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEeeeecccccCCCC
Confidence 999999999999999986 68899999999999999999999999999999999888 9999999999999999999
Q ss_pred cceEEEeeccHHHHHhhcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCccccccHHHHHHHHHHHHHHHH
Q 010094 240 GFSISIMKADEVILKHLDATTKAPHWPVGVDGNRPPAKIPVPMPPSHSMKSDESLGRPLQLSQQGHVLEVTIEAAAEAVV 319 (518)
Q Consensus 240 GfSiTll~ld~~~~~~ldap~~a~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~li 319 (518)
|||||||++|++|++|||+||++|+||..... .+.. +.......... ...........+...+++||..+++.|+
T Consensus 302 G~SiTl~~~d~~~~~~ldap~~~~~~~~~~~~-~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~a~~l~ 376 (568)
T PRK14479 302 GASLTLMKLDDELEELWDAPADTPAFRRGGAV-EPVE--YVEAAEEDDAE--EPPRASKASRATAANLVAALDAVAEALI 376 (568)
T ss_pred ccEEEeeeCCHHHHHHhCCCCCCCCCCCCCcc-cccC--ccccccccccc--ccccCCccccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999663110 0100 00000000000 0000111122346889999999999999
Q ss_pred HhHHhhhhccCCCCCCchhHHHHHHHHHHHHHhhhcCCC--CCHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhc
Q 010094 320 NLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKKYYPL--NDAAETVNEIGASIRRVMGGTSGILYHIFCKAAYAKLKA 397 (518)
Q Consensus 320 ~~e~~Ln~LD~~vGDGD~G~tm~~ga~ai~~~l~~~~~~--~~~~~~l~~ia~a~~~~~GGtSG~Lys~~f~~~a~~l~~ 397 (518)
+++++||+||+.+||||||+||++||+++.+.+++ ... .++.++|+.+++++++.||||||+|||+||+++++.+++
T Consensus 377 ~~~d~Ln~LD~~VGDGD~G~nM~~G~~ai~~~l~~-~~~~~~~~~~~l~~i~~all~~~GGtSG~Lys~~f~~~a~~l~~ 455 (568)
T PRK14479 377 DNEDELGELDAVAGDGDHGIGMARGSKAALAAARA-AVEAGAGAGSVLAAAGDAWADHAGGTSGPLWGTALRAAGKALGD 455 (568)
T ss_pred HhHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHhh-ccccCCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999973 332 689999999999999999999999999999999999987
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcchhhh
Q 010094 398 SSKSGITSKQWAEALEASIAAVSKYGGATAGYRTMLDALIPAAAVLQERLSAGIDPSTAFILSSEAAIAGAESTKHMQAQ 477 (518)
Q Consensus 398 ~~~~~~~~~~~~~al~~a~~~i~~~g~A~~GDkTMlDaL~Pa~~al~~~~~~~~~~~~~l~~A~~aA~~gae~T~~m~A~ 477 (518)
+ ++++.++|+++|.++++++++||+|+||||||||+|+|+++++++....+.++.++|++++++|++|+++|++|+|+
T Consensus 456 ~--~~l~~~~la~al~~g~~~v~~~G~AkpGDkTMLDaL~Pa~eal~~~~~~~~~~~~~l~~a~~aA~~gae~T~~m~A~ 533 (568)
T PRK14479 456 K--DEPTAADFAAAVRAAVDAIQELGGAQVGDKTMVDALVPFADALEAAAAAGADLAEAWAAAAEAAEEGAEATADLVPR 533 (568)
T ss_pred C--CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCeeeeeHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhhhh
Confidence 5 67999999999999999999999999999999999999999999988888999999999999999999999999999
Q ss_pred hccccccCCccCCCCCCchHHHHHHHHHHHHHHHH
Q 010094 478 AGRSTYISPEILASVPDPGAMAAAAWYRAAALAVK 512 (518)
Q Consensus 478 ~GRAsY~gers~g~~pDpGA~av~~il~al~~~~~ 512 (518)
+|||+|+|||++|+ |||||+++++||++|++.+.
T Consensus 534 ~GRAsYlgers~Gv-~DPGA~~~~~il~al~~~~~ 567 (568)
T PRK14479 534 MGRARYLGERSLGT-PDAGAVSLALIFTAIAGSLK 567 (568)
T ss_pred hcccccccccccCC-CCCcHHHHHHHHHHHHHHhh
Confidence 99999999999965 59999999999999998764
No 2
>KOG2426 consensus Dihydroxyacetone kinase/glycerone kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6e-146 Score=1127.18 Aligned_cols=497 Identities=49% Similarity=0.770 Sum_probs=457.8
Q ss_pred CccccccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCC-CCC
Q 010094 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRG-IAG 79 (518)
Q Consensus 1 mL~aav~G~vFaSP~~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~g~~v~~v~v~DDva~~~~~~-~~g 79 (518)
||||++||+||||||.+|||+|||+|.+.+|+|+|||||||||||||||+||||++|++||+|+|+||||++++++ ++|
T Consensus 71 mLtaai~G~iFASPstkqI~aairaV~~~~GtLlIVKNYTGD~LhFGLAaErara~G~~ve~v~vgDDvavg~~kg~~vG 150 (582)
T KOG2426|consen 71 MLTAAIAGDIFASPSTKQILAAIRAVEGEAGTLLIVKNYTGDRLHFGLAAERARAAGIKVELVAVGDDVAVGRKKGGKVG 150 (582)
T ss_pred hhhhhhhcccccCCcHHHHHHHHHHhccCCceEEEEeccccceeehhhhHHHHHhcCCceEEEEEccccccCCccccccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999887 899
Q ss_pred ccccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCCCCCCCCcCCCceeEeccccCCCCccc-c
Q 010094 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAV-A 158 (518)
Q Consensus 80 RRG~aG~v~v~KiaGa~A~~G~~l~ev~~~~~~~~~~~~t~gval~~c~~P~~~~~~~l~~~e~E~G~GiHgEpG~~~-~ 158 (518)
||||+||||||||+||+|++|++|+||+++++.+++|+.||||+|+||++||++|+++|+++|||+|||||||||++| .
T Consensus 151 RRGLagTVLvHKIAGAaA~~Gl~Le~va~~ak~v~dn~~Tig~SL~hc~vPG~k~e~eL~~de~ElGmGIHnEpG~~r~~ 230 (582)
T KOG2426|consen 151 RRGLAGTVLVHKIAGAAAAEGLSLEEVAKVAKSVVDNMGTIGVSLDHCSVPGRKPEDELGADEMELGMGIHNEPGVKRIS 230 (582)
T ss_pred cccccceeeeehhhhHHHHccCCHHHHHHHHHHHHHhhhhheeeeeeeccCCCCcccccCccceeecccccCCCCceecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999988 5
Q ss_pred cCCCHHHHHHHHHHHHHhc--ccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeccccccc
Q 010094 159 DLQPVDVVVSHVLKQILST--ETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSL 236 (518)
Q Consensus 159 ~~~~a~~~v~~ml~~ll~~--~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSl 236 (518)
+++|+++||.+||++|+++ +|+|+++.++|+||+|||||||+|.|||.+++.++.++|+++|||.|+|+|+|+|||||
T Consensus 231 p~ps~d~lVs~mL~~ll~~~~drs~V~~~~~d~VVllVNNLGG~S~lEl~~ia~~v~~~L~~~y~I~p~R~~~G~fmTsL 310 (582)
T KOG2426|consen 231 PIPSIDELVSQMLPQLLDPTKDRSYVKFEEGDEVVLLVNNLGGVSNLELGIIAGKVVEQLEDEYGIGPVRTFAGTFMTSL 310 (582)
T ss_pred CCCCHHHHHHHHHHHhcCCccccccccccCCCeEEEEEcCCCCcchhhhHHHHHHHHHHHHhhcCccceEEEeeeeeeec
Confidence 6677999999999999998 49999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEeec---------cHHHHHhhcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCccccccHHHH
Q 010094 237 DMAGFSISIMKA---------DEVILKHLDATTKAPHWPVGVDGNRPPAKIPVPMPPSHSMKSDESLGRPLQLSQQGHVL 307 (518)
Q Consensus 237 ~m~GfSiTll~l---------d~~~~~~ldap~~a~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (518)
||+||||||||. |+.+++|+|+|+++|+||.......+ .+..++.+....+. +.++....+.+.|
T Consensus 311 ng~GfsITll~atka~~~f~~~~s~l~~lda~~~A~~Wp~~~~~~v~-----~~~~~~~s~~~~~~-~~~s~vt~d~~~~ 384 (582)
T KOG2426|consen 311 NGPGFSITLLNATKATKYFDEDTSLLDLLDAPTNAPGWPVAAPGKVP-----TPPISSSSLEHLES-EKKSGVTVDAQKF 384 (582)
T ss_pred cCCcceEEEEeccccccccCCCccHHHhhhCcccCCCCcccCcccCC-----CCCCCCcchhhccc-ccCCCccccHHHH
Confidence 999999999999 78899999999999999976522111 11111111111111 1222556789999
Q ss_pred HHHHHHHHHHHHHhHHhhhhccCCCCCCchhHHHHHHHHHHHHHhhh-cCCCCCHHHHHHHHHHHHHHhcCCchhhHHHH
Q 010094 308 EVTIEAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKK-YYPLNDAAETVNEIGASIRRVMGGTSGILYHI 386 (518)
Q Consensus 308 ~~~l~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~ga~ai~~~l~~-~~~~~~~~~~l~~ia~a~~~~~GGtSG~Lys~ 386 (518)
..||.+++++|++.||.||+||+.+||||||+||.+|+++|.+++++ .++.+++.+++.+|+..++++||||||+||++
T Consensus 385 ~~~l~~~~~~ii~~Ep~lt~~D~~aGDGDCGtTl~~gaeaI~e~~k~~~~~~~~~~~~v~~is~~ie~sMGGTSG~LY~i 464 (582)
T KOG2426|consen 385 AAALKAVAEAIIESEPHLTELDTIAGDGDCGTTLVRGAEAILEALKNDKLPLDDPAQLVKDISDIIEDSMGGTSGALYSI 464 (582)
T ss_pred HHHHHHHHHHHHhcccchhHHhccccCCcchhhhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhhcCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999975 37889999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010094 387 FCKAAYAKLKASSKSGITSKQWAEALEASIAAVSKYGGATAGYRTMLDALIPAAAVLQERLSAGIDPSTAFILSSEAAIA 466 (518)
Q Consensus 387 ~f~~~a~~l~~~~~~~~~~~~~~~al~~a~~~i~~~g~A~~GDkTMlDaL~Pa~~al~~~~~~~~~~~~~l~~A~~aA~~ 466 (518)
||.++++.+++..+++++.+.|+++++.+++++++||+||||||||+|+|.||++.|.. +++ +.+|+++|++
T Consensus 465 ~lsa~aqgl~~~~~~~it~~~~a~al~~aldal~KYt~Ar~G~rTMiDaL~pfve~~s~----g~d----~~~AvkaA~~ 536 (582)
T KOG2426|consen 465 FLSAAAQGLKQSGQEEITRKTWAEALKVALDALQKYTGARPGDRTMIDALQPFVETFSA----GKD----LLAAVKAAEK 536 (582)
T ss_pred HHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcC----Ccc----HHHHHHHHHH
Confidence 99999999998766899999999999999999999999999999999999998888764 455 4567999999
Q ss_pred HHHhCcchhhhhccccccCCccCCCCCCchHHHHHHHHHHHHHHHH
Q 010094 467 GAESTKHMQAQAGRSTYISPEILASVPDPGAMAAAAWYRAAALAVK 512 (518)
Q Consensus 467 gae~T~~m~A~~GRAsY~gers~g~~pDpGA~av~~il~al~~~~~ 512 (518)
|+|+|++|.|++|||||+++.. +.+|||||++++.|++++.++++
T Consensus 537 gAeaT~~m~A~~GRASYvsd~~-~~~PDpGA~a~aa~l~a~~~a~~ 581 (582)
T KOG2426|consen 537 GAEATAKMQAKVGRASYVSDSE-QTVPDPGAVALAAILRAIVTALK 581 (582)
T ss_pred HHHHHHhhhhhcceeeeecccc-cCCCCchHHHHHHHHHHHHHHhc
Confidence 9999999999999999999765 57899999999999999998875
No 3
>PTZ00375 dihydroxyacetone kinase-like protein; Provisional
Probab=100.00 E-value=7.4e-144 Score=1170.15 Aligned_cols=496 Identities=38% Similarity=0.578 Sum_probs=443.6
Q ss_pred CccccccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 010094 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (518)
Q Consensus 1 mL~aav~G~vFaSP~~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~g~~v~~v~v~DDva~~~~~~~~gR 80 (518)
|||||||||||||||++||+++||+|++++|||||||||||||||||||+|+|+++||+|++|+|+||||++ +.+++||
T Consensus 70 ml~aav~G~vFaSPs~~qi~~ai~~v~~~~Gvl~ivkNYtGD~lnF~lA~e~a~~eGi~v~~v~v~DDva~~-~~~~~~R 148 (584)
T PTZ00375 70 WLTAAVCGSVFASPSTKHVLAAIEYVPNGPGCLLIVKNYTGDILNFELAVEQARARGIQVETVLVADDAAFG-TKDIANR 148 (584)
T ss_pred ccceeecccccCCCCHHHHHHHHHHhcCCCCEEEEecccHHHHhhHHHHHHHHHhCCCcEEEEEeCCccCCC-CCCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999997 3458899
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCCCCCCCCcCCCceeEeccccCCCCcccccC
Q 010094 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADL 160 (518)
Q Consensus 81 RG~aG~v~v~KiaGa~A~~G~~l~ev~~~~~~~~~~~~t~gval~~c~~P~~~~~~~l~~~e~E~G~GiHgEpG~~~~~~ 160 (518)
||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+||....|+|++||||||||||||||++|.++
T Consensus 149 RG~AGtv~v~KiaGAaA~~G~~L~ev~~~a~~~~~~~~tigval~~c~~Pg~~~~~~l~~~~~E~G~GIHgEpG~~~~~~ 228 (584)
T PTZ00375 149 RGIAGTVLLYKILGAAAEKGASLTQLKKLADRISSNMRSIGVSLSSCSLPGNDPSSTVPPGTMEVGLGIHGEKGLARIPF 228 (584)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeeeccccccCCCCCCCCCCCCceEecccccCCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999954489999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcc--c---CCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccc
Q 010094 161 QPVDVVVSHVLKQILSTE--T---NYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTS 235 (518)
Q Consensus 161 ~~a~~~v~~ml~~ll~~~--~---~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~TS 235 (518)
+++++++++|+++|+++- + ++++++++|+|+|||||||+||++|||++++++.++|+++ ||+|+|+|+|+||||
T Consensus 229 ~~a~~l~~~l~~~ll~~~~~~~~~~~~~~~~~d~v~vlvN~LG~t~~~El~i~~~~v~~~l~~~-gi~v~~~~vG~~~TS 307 (584)
T PTZ00375 229 QGAKDLVKFLIGILLGKGKKRGGGKTTAIREGAKVALLVNNLGSTTDLEMSILAHHALRQLAQA-GLTVVGVHSGRLMTS 307 (584)
T ss_pred CCHHHHHHHHHHHHHhhhhccccccccCCCCCCeEEEEEcCCCCCcHHHHHHHHHHHHHHHHHC-CCeEEEEeeeccccc
Confidence 999999999999999851 1 2458889999999999999999999999999999999888 999999999999999
Q ss_pred cCCCcceEEEeeccH-HHHH--------hhcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCccccccHHH
Q 010094 236 LDMAGFSISIMKADE-VILK--------HLDATTKAPHWPVGVDGNRPPAKIPVPMPPSHSMKSDESLGRPLQLSQQGHV 306 (518)
Q Consensus 236 l~m~GfSiTll~ld~-~~~~--------~ldap~~a~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (518)
|||+|||||||++|+ +|++ |||+||++|+||.... +... .... . .. .... .++..+.....
T Consensus 308 ldm~G~SlTll~l~d~~~~~~~~~p~~~lldapt~apaw~~~~~---~~~~--~~~~--~-~~-~~~~-~~~~~~~~~~~ 377 (584)
T PTZ00375 308 LEMHGFSLTLLPIEDEDDLQLLDTNQKPLLNFHTPQSSWATAKG---PLSA--LQLA--K-PE-AEAA-SRKAATPTNSL 377 (584)
T ss_pred cCCCccEEEEEecCcHHHHHHhccccHhhhCCCCCCCCCCCCCC---Cccc--cccc--c-cc-cccc-CccccchhHHH
Confidence 999999999999954 5999 8888899999976321 1000 0000 0 00 0000 11111012477
Q ss_pred HHHHHHHHHHHHHHhHHhhhhccCCCCCCchhHHHHHHHHHHHHHhhhcCCC-CCHHHHHHHHHHHHHHhcCCchhhHHH
Q 010094 307 LEVTIEAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKKYYPL-NDAAETVNEIGASIRRVMGGTSGILYH 385 (518)
Q Consensus 307 ~~~~l~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~ga~ai~~~l~~~~~~-~~~~~~l~~ia~a~~~~~GGtSG~Lys 385 (518)
++++|.++|+.|+++|++||+||+++||||||+||.+||++|.+.++. ++. .++.++|..+++++++.|||||||||+
T Consensus 378 l~~~l~~~~~~l~~~e~~Lt~LD~~iGDGDhG~tm~rG~~ai~~~l~~-~~~~~~~~~~l~~ig~a~~~~vGGSSG~Lyg 456 (584)
T PTZ00375 378 LRSVLERVFETLIESENYLNELDAEVGDGDLGSGLERSSKAVLESLPY-LPLEANVRKTLTLISKAVADAFGGSSGPLYG 456 (584)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhccccCCcHHHHHHHHHHHHHHHhhh-ccccCCHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 999999999999999999999999999999999999999999999983 554 689999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Q 010094 386 IFCKAAYAKLKASSKSGITSKQWAEALEASIAAVSKYGGATAGYRTMLDALIPAAAVLQERLS--AGIDPSTAFILSSEA 463 (518)
Q Consensus 386 ~~f~~~a~~l~~~~~~~~~~~~~~~al~~a~~~i~~~g~A~~GDkTMlDaL~Pa~~al~~~~~--~~~~~~~~l~~A~~a 463 (518)
+||+++++.+++......+.++|+++|+.++++|++||+|+||||||||+|+||+++|++... ++.++.++|++|+++
T Consensus 457 ~~f~~aa~~l~~~~~g~~~~~~~a~al~a~~eaI~~rG~Ak~GDKTMlDaL~Pa~~al~~~~~~~~~~~~~~~l~~Aa~a 536 (584)
T PTZ00375 457 AFLLGGANALAEALNGGNAVDAVRAALAAGSHSIQELGGARVGDRTMVDVLIPFAEALNSCPSVNEAASSPELLKACSEE 536 (584)
T ss_pred HHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhcCCCCCCeeeeeeHHHHHHHHHHhhhcccCCCHHHHHHHHHHH
Confidence 999999999974210123578999999999999999999999999999999999999988653 578899999999999
Q ss_pred HHHHHHhCcchhhhhccccccCCccCCCCCCchHHHHHHHHHHHHHH
Q 010094 464 AIAGAESTKHMQAQAGRSTYISPEILASVPDPGAMAAAAWYRAAALA 510 (518)
Q Consensus 464 A~~gae~T~~m~A~~GRAsY~gers~g~~pDpGA~av~~il~al~~~ 510 (518)
|++|+|+|++|.|++|||+|+|||++|+ |||||+++++||+++++.
T Consensus 537 A~~Gae~Tk~m~A~~GRAsylgerslG~-~DPGA~s~~~i~~al~~~ 582 (584)
T PTZ00375 537 AREAAEATALLPAKHGRSRYLEGKELGK-KDPGAELVVAWVEALASE 582 (584)
T ss_pred HHHHHHhhhccccccCccccccccccCC-CCccHHHHHHHHHHHHhh
Confidence 9999999999999999999999999965 699999999999999754
No 4
>TIGR02361 dak_ATP dihydroxyacetone kinase, ATP-dependent. This family consists of examples of the form of dihydroxyacetone kinase (also called glycerone kinase) that uses ATP (2.7.1.29) as the phosphate donor, rather than a phosphoprotein as in E. coli. This form is composed of a single chain with separable domains homologous to the K and L subunits of the E. coli enzyme, and is found in yeasts and other eukaryotes and in some bacteria, including Citrobacter freundii. The member from tomato has been shown to phosphorylate dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some other aldoses and ketoses (PubMed:11985845).
Probab=100.00 E-value=2.9e-142 Score=1161.25 Aligned_cols=496 Identities=48% Similarity=0.746 Sum_probs=441.6
Q ss_pred CccccccCCCCCCCCHHHHHHHHHhccC-CCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCC-CCC
Q 010094 1 MLTAAICGDVFASPPVDSILAGIHAVTG-PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPR-GIA 78 (518)
Q Consensus 1 mL~aav~G~vFaSP~~~~i~~ai~~~~~-~~Gvl~iv~NYtGD~lnFg~A~e~a~~~g~~v~~v~v~DDva~~~~~-~~~ 78 (518)
|||||||||||||||++||+++||++++ ++|||||||||||||||||||+|+|+++||+|++|+|+||||+++.+ .++
T Consensus 66 ml~aav~G~vFaSPs~~~i~~ai~~~~~~~~Gvl~iv~NYtGD~lnF~~A~e~a~~eg~~v~~v~v~DDva~~~~~~~~~ 145 (574)
T TIGR02361 66 MLTAAVAGDVFASPSTKQILAAIRAVVGSEAGTLLIVKNYTGDRLNFGLAAEKAKAEGYNVEMVIVGDDVSVGRKKGGLV 145 (574)
T ss_pred ccceeeeccccCCCCHHHHHHHHHHhcCCCCcEEEEecccHHHhhhHHHHHHHHHhCCCcEEEEEeCCccCCCCccCCCC
Confidence 8999999999999999999999999999 99999999999999999999999999999999999999999997643 478
Q ss_pred CccccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCCCCCCC-CcCCCceeEeccccCCCCccc
Q 010094 79 GRRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSD-RLGPGKMELGLGIHGEPGAAV 157 (518)
Q Consensus 79 gRRG~aG~v~v~KiaGa~A~~G~~l~ev~~~~~~~~~~~~t~gval~~c~~P~~~~~~-~l~~~e~E~G~GiHgEpG~~~ 157 (518)
||||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+||++|.| +|++||||||||||||||++|
T Consensus 146 ~RRGlAGtv~v~KiaGAaA~~G~~L~ev~~~~~~~~~~~~Tigval~~c~~Pg~~~~~~~l~~~e~E~G~GiHgEpG~~~ 225 (574)
T TIGR02361 146 GRRGLAGTVLVHKIAGAAAARGLSLAEVAKVAQAAADNLVTIGASLDHCHVPGETEAEPELKEDEMELGMGIHNEPGAKR 225 (574)
T ss_pred CCCchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeeeccccccCCCCCCCCCCCCCceEeccccCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999976665 999999999999999999999
Q ss_pred ccCCC-HHHHHHHHHHHHHhcc--cCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeccccc
Q 010094 158 ADLQP-VDVVVSHVLKQILSTE--TNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMT 234 (518)
Q Consensus 158 ~~~~~-a~~~v~~ml~~ll~~~--~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~T 234 (518)
.++.| +++++++|+++|++++ |+|++++++|+|+|||||||+||+||||++++++.++|++++||+|+|+|+|+|||
T Consensus 226 ~~~~~a~~~l~~~l~~~l~~~~d~r~~~~~~~~d~v~~lvN~lG~t~~~El~i~~~~~~~~l~~~~~i~v~~~~~G~~~T 305 (574)
T TIGR02361 226 ISPIPSSDLVVQLMLKKLLDETDKRSYVKFNEGDEVVLLVNNLGGVSNLELGIIADEVVEQLALHYNIIPVRIYSGTFMT 305 (574)
T ss_pred CCCCChHHHHHHHHHHHHhccccccccCCCCCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEeeecccc
Confidence 99999 6669999999999863 67889999999999999999999999999999999999888579999999999999
Q ss_pred ccCCCcceEEEeeccH---HHHHhhcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCccccccHHHHHHHH
Q 010094 235 SLDMAGFSISIMKADE---VILKHLDATTKAPHWPVGVDGNRPPAKIPVPMPPSHSMKSDESLGRPLQLSQQGHVLEVTI 311 (518)
Q Consensus 235 Sl~m~GfSiTll~ld~---~~~~~ldap~~a~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (518)
||||+||||||+++|+ +|++|||+||++|+||.......+............ . ...........+...+++||
T Consensus 306 sl~m~G~SlTl~~ld~~~~e~~~~ldap~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~l~~~l 381 (574)
T TIGR02361 306 SLNGPGFSITLLNATEAGKSILDLLDAPTEAPGWPVAAYSSKPWREKREVVSSSA-P---ELIEETAVRSYDPQLVAAIL 381 (574)
T ss_pred cCCCCccEEEEEecCCChHHHHHHhCCCCCCcCCCCCCccccccccccccccccc-c---ccccCCCcccCCHHHHHHHH
Confidence 9999999999999999 999999999999999753211101000000000000 0 00110111123568899999
Q ss_pred HHHHHHHHHhHHhhhhccCCCCCCchhHHHHHHHHHHHHHhhh-cCCCCCHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Q 010094 312 EAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKK-YYPLNDAAETVNEIGASIRRVMGGTSGILYHIFCKA 390 (518)
Q Consensus 312 ~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~ga~ai~~~l~~-~~~~~~~~~~l~~ia~a~~~~~GGtSG~Lys~~f~~ 390 (518)
+++|+.|++++++||+||+.+||||||+||.+|++++.+.++. .++..++.++|..+++++++.||||||+|||+||++
T Consensus 382 ~~~~~~l~~~~d~Ln~LD~~vGDGD~G~tm~~G~~ai~~~l~~~~~~~~~~~~~l~~ig~a~~~~~GGtSG~Lyg~~f~~ 461 (574)
T TIGR02361 382 ESGCAALLELEPHLTKLDTKAGDGDCGSTLARGAEAILELLKSKKLPLNDPATLLAQISDVVEGVMGGTSGALYSIFFSA 461 (574)
T ss_pred HHHHHHHHHhHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999872 134568999999999999999999999999999999
Q ss_pred HHHHhhcc--CCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 010094 391 AYAKLKAS--SKSGITSKQWAEALEASIAAVSKYGGATAGYRTMLDALIPAAAVLQERLSAGIDPSTAFILSSEAAIAGA 468 (518)
Q Consensus 391 ~a~~l~~~--~~~~~~~~~~~~al~~a~~~i~~~g~A~~GDkTMlDaL~Pa~~al~~~~~~~~~~~~~l~~A~~aA~~ga 468 (518)
+++.+++. ..++++.++|+++|+++++++++||+++||||||||+|+|+++++++..+ .|++|+++|++|+
T Consensus 462 ~a~~l~~~~~~~~~~~~~~~a~al~aa~eai~~~G~A~pGDkTMLDaL~Pa~~al~~~~~-------~l~~A~~aA~~ga 534 (574)
T TIGR02361 462 AAQSLKQNASKKEEITPEAWAAALKTALDALYKYTGARPGDRTMIDALQPFVEALEAGKS-------NLNAAVKAAEAGA 534 (574)
T ss_pred HHHHHhhccccccCCCHHHHHHHHHHHHHHHHHhcCCCCCCCeeeeeHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 99999862 12578999999999999999999999999999999999999999987432 1889999999999
Q ss_pred HhCcchhhhhccccccCCcc-CCCCCCchHHHHHHHHHHHH
Q 010094 469 ESTKHMQAQAGRSTYISPEI-LASVPDPGAMAAAAWYRAAA 508 (518)
Q Consensus 469 e~T~~m~A~~GRAsY~gers-~g~~pDpGA~av~~il~al~ 508 (518)
++|++|+|++|||+|+|+|+ .|+ |||||+++++||++|+
T Consensus 535 e~T~~m~A~~GRAsYlgers~~Gv-~DPGA~~~~~il~al~ 574 (574)
T TIGR02361 535 EATKKMKAKAGRASYVSSEALEGV-PDPGAVGLAAWLRGLA 574 (574)
T ss_pred HhChhhhhhhcccccccccccCCC-CCccHHHHHHHHHHhC
Confidence 99999999999999999998 454 5999999999999873
No 5
>PRK14481 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=100.00 E-value=4.3e-101 Score=784.34 Aligned_cols=262 Identities=47% Similarity=0.753 Sum_probs=257.0
Q ss_pred CccccccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 010094 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (518)
Q Consensus 1 mL~aav~G~vFaSP~~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~g~~v~~v~v~DDva~~~~~~~~gR 80 (518)
|||||||||||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||++++++++||
T Consensus 68 mLdaav~G~VFaSPs~~~Il~ai~av~~~~GvL~iv~NYtGD~lnF~lA~E~a~~eGi~v~~V~v~DDva~~~~~~~~~R 147 (331)
T PRK14481 68 MLDAAVCGAVFTSPTPDQILEAIKAVDTGAGVLLIVKNYSGDVMNFEMAAELAEMEGIEVASVVVDDDVAVEDSLYTQGR 147 (331)
T ss_pred ccceeeeccccCCCCHHHHHHHHHhccCCCCEEEEeCCcHHHhccHHHHHHHHHhCCCCEEEEEeCCcccCCCCccCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999877678899
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCC-CCCCCCcCCCceeEeccccCCCCccccc
Q 010094 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (518)
Q Consensus 81 RG~aG~v~v~KiaGa~A~~G~~l~ev~~~~~~~~~~~~t~gval~~c~~P~-~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (518)
||+|||||||||+||+|++|+||+||+++++++++|++||||+|+|||+|| ++|+|+|++||||||||||||||++|.+
T Consensus 148 RGlAG~vlv~KiaGAaA~~G~sL~ev~~~a~~~~~~~~Tigval~~ct~Pg~~~~~f~l~~~emE~GmGIHGEpG~~r~~ 227 (331)
T PRK14481 148 RGVAGTVFVHKIAGAAAEAGASLDEVKALAEKVNPNIRSMGVALSPCTVPAVGKPGFDLGDDEIEIGIGIHGEPGRRREK 227 (331)
T ss_pred CchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeecccccccCCCCCCCCccCCCcEEeccccCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999 6799999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCC
Q 010094 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (518)
Q Consensus 160 ~~~a~~~v~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSl~m~ 239 (518)
++++++++++|+++|+++ ++++++|+++|||||||+||+||||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 228 ~~~a~~l~~~m~~~ll~~----~~~~~gd~v~lLvN~LG~ts~lEl~i~~~~v~~~L~~~-gi~i~r~~vG~~~TSldm~ 302 (331)
T PRK14481 228 LKPADEIAEELLEKILED----LKLVAGDEVLVLVNGMGATPLMELYIVYNDVAELLEER-GVTVARSLVGNYMTSLDMA 302 (331)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEEEeecccccCCCC
Confidence 999999999999999986 68999999999999999999999999999999999887 9999999999999999999
Q ss_pred cceEEEeeccHHHHHhhcCcCCCCCCCC
Q 010094 240 GFSISIMKADEVILKHLDATTKAPHWPV 267 (518)
Q Consensus 240 GfSiTll~ld~~~~~~ldap~~a~~w~~ 267 (518)
|||||||++|++|++|||+||++|+|||
T Consensus 303 G~SiTLl~ld~el~~~ldap~~~~~w~~ 330 (331)
T PRK14481 303 GFSITLLKLDDELLELLDAPVDTPALRW 330 (331)
T ss_pred ceEEEEeecCHHHHHHhCCCCcCCCCCC
Confidence 9999999999999999999999999986
No 6
>TIGR02363 dhaK1 dihydroxyacetone kinase, DhaK subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the DhaK subunit of the latter type of dihydroxyacetone kinase, but it specifically excludes the DhaK paralog DhaK2 (TIGR02362) found in the same operon as DhaK and DhaK in the Firmicutes.
Probab=100.00 E-value=6.3e-101 Score=782.61 Aligned_cols=260 Identities=43% Similarity=0.704 Sum_probs=255.3
Q ss_pred CccccccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 010094 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (518)
Q Consensus 1 mL~aav~G~vFaSP~~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~g~~v~~v~v~DDva~~~~~~~~gR 80 (518)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||++++++++||
T Consensus 69 mLdAav~G~VFaSPs~~~I~~ai~av~~~~GvL~iv~NYtGD~lnF~mA~E~a~~eGi~v~~V~V~DDva~~~~~~~~~R 148 (329)
T TIGR02363 69 MLDAAVPGEVFTSPTPDQILEAIKAVDQGAGVLLIVKNYTGDVMNFEMAAELAEDEGIKVATVVVDDDIAVEDSLYTAGR 148 (329)
T ss_pred ccceeeeccccCCCCHHHHHHHHHhccCCCCEEEEeCCcHHHhccHHHHHHHHHHcCCcEEEEEECCcccCCCCccCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999876668899
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCC-CCCCCCcCCCceeEeccccCCCCccccc
Q 010094 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (518)
Q Consensus 81 RG~aG~v~v~KiaGa~A~~G~~l~ev~~~~~~~~~~~~t~gval~~c~~P~-~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (518)
||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+|| ++|+|+|++||||||||||||||++|.+
T Consensus 149 RGlAGtv~v~KiaGAaAe~G~sL~ev~~~a~~~~~~~~TiGval~~ctvPg~~~~~f~l~~~emE~GmGIHGEpG~~r~~ 228 (329)
T TIGR02363 149 RGVAGTVFVHKIAGAAAEKGASLDELKSLGEKVNPNTKSIGVALTACTVPAVGKPGFDLADDEMEIGVGIHGEPGIRREK 228 (329)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeecccccccCCCCCCCcccCCCcEEeccccCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999 6899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCC
Q 010094 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (518)
Q Consensus 160 ~~~a~~~v~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSl~m~ 239 (518)
+.|+++++++|+++|+++ ++++++|+++|||||||+||+||||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 229 ~~~a~~l~~~l~~~l~~~----~~~~~gd~v~vlvN~LG~ts~lEl~i~~~~v~~~L~~~-gi~v~r~~vG~~~TSldm~ 303 (329)
T TIGR02363 229 MKSSDEIADELLDKLLDD----LGLQSGDRVIVLVNGMGATPLMELYIFYNDVQRLLEQR-GVNVARTLVGNYMTSLDMA 303 (329)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEeecccccCCCC
Confidence 999999999999999986 68899999999999999999999999999999999887 9999999999999999999
Q ss_pred cceEEEeeccHHHHHhhcCcCCCCCC
Q 010094 240 GFSISIMKADEVILKHLDATTKAPHW 265 (518)
Q Consensus 240 GfSiTll~ld~~~~~~ldap~~a~~w 265 (518)
||||||+++|++|++|||+||++|+|
T Consensus 304 G~SiTLl~ld~el~~~ldap~~~~~w 329 (329)
T TIGR02363 304 GFSLTLLKLDDELLELWDAPVTTIAL 329 (329)
T ss_pred ceEEEEeeCCHHHHHHhCCCCCCCCC
Confidence 99999999999999999999999999
No 7
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form with a phosphoprotein donor related to PTS transport proteins. This family represents a protein, unique to the Firmicutes (low GC Gram-positives), that appears to be a divergent second copy of the K subunit of that complex; its gene is always found in operons with the other three proteins of the complex.
Probab=100.00 E-value=1.4e-100 Score=779.25 Aligned_cols=260 Identities=35% Similarity=0.551 Sum_probs=252.8
Q ss_pred CccccccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 010094 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (518)
Q Consensus 1 mL~aav~G~vFaSP~~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~g~~v~~v~v~DDva~~~~~~~~gR 80 (518)
|||||||||||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||++++....||
T Consensus 65 mLdAav~G~VFaSPs~~~I~~ai~av~~~~GvL~ivkNYtGD~lNF~mA~E~a~~eGi~v~~V~V~DDvA~~~~~~~~~R 144 (326)
T TIGR02362 65 MLSAAIMGDVFVPPTAQDILEAIRQVDRGKGVFVIIKNFEADLSEFSQAIQQARQEGRQIKYIIVHDDISVEHESFKQRR 144 (326)
T ss_pred ccceeEeccccCCCCHHHHHHHHHhhcCCCCEEEEeccCHHHHhhHHHHHHHHHHcCCcEEEEEECCcccCCCCcccCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999654445699
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCC-CCCCCCcCCCceeEeccccCCCCccccc
Q 010094 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (518)
Q Consensus 81 RG~aG~v~v~KiaGa~A~~G~~l~ev~~~~~~~~~~~~t~gval~~c~~P~-~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (518)
||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+|| ++|+|+|++||||||||||||||++|.+
T Consensus 145 RGlAGtv~v~KiaGAaAe~G~sL~ev~~~a~~~~~~~~Tigval~~c~~Pg~~~~~f~l~~~emE~G~GIHGEpG~~r~~ 224 (326)
T TIGR02362 145 RGVAGTILVHKILGAAAAEGASLDELEHIAAALVTNIATIGVAAKSARIPGQSTPSFDLEEGEIYYGIGIHGEPGYRTEP 224 (326)
T ss_pred CchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeeccccccCCCCCCCCCccCCCcEEeccccCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCC
Q 010094 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (518)
Q Consensus 160 ~~~a~~~v~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSl~m~ 239 (518)
++++++++++|+++|+++ +++++||+++|||||||+||+||||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 225 ~~~a~elv~~l~~~ll~~----~~~~~gd~v~vlvN~LG~t~~lEl~i~~~~v~~~L~~~-gi~v~r~~vG~~~TSldm~ 299 (326)
T TIGR02362 225 FVSSEHLAVELVNKLKLK----FRWQADDHYAVLVNNLGGTTPMEQMVFNNDVHELLALE-ALHLPFIKVGTFLTSLDMH 299 (326)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEeEeecccCccCCC
Confidence 999999999999999986 68899999999999999999999999999999999888 9999999999999999999
Q ss_pred cceEEEeec-cHHHHHhhcCcCCCCCC
Q 010094 240 GFSISIMKA-DEVILKHLDATTKAPHW 265 (518)
Q Consensus 240 GfSiTll~l-d~~~~~~ldap~~a~~w 265 (518)
|||||||++ |+||++|||+||++|+|
T Consensus 300 G~SiTll~l~d~el~~~ldap~~~~~~ 326 (326)
T TIGR02362 300 GLSLTLLRLKDPQWLDYLNAPVDAAAW 326 (326)
T ss_pred ccEEEEEeCCcHHHHHHhCCCCCCCCC
Confidence 999999999 56999999999999999
No 8
>PRK11468 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=100.00 E-value=1.8e-100 Score=782.24 Aligned_cols=266 Identities=39% Similarity=0.632 Sum_probs=258.0
Q ss_pred CccccccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 010094 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (518)
Q Consensus 1 mL~aav~G~vFaSP~~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~g~~v~~v~v~DDva~~~~~~~~gR 80 (518)
||||||||+||||||++||++|||++++++|||+|||||||||||||||+|+|+++||+|++|+|+||||++++++++||
T Consensus 68 mLdAAv~G~VFaSPs~~qI~~ai~av~~~~GvLlivkNYtGDvlNF~mAaE~a~~eGi~v~~V~V~DDva~~~~~~~~gR 147 (356)
T PRK11468 68 MLDGACPGEIFTSPTPDQMFECAMQVDGGEGVLLIIKNYTGDVLNFETATELLHDSGVKVTTVLIDDDVAVKDSLYTAGR 147 (356)
T ss_pred cccceeeccccCCCCHHHHHHHHHhhcCCCCEEEEecccHHhhccHHHHHHHHHhCCCcEEEEEeCCcccCCCCcCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999877778999
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCC-CCCCCCcCCCceeEeccccCCCCccccc
Q 010094 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (518)
Q Consensus 81 RG~aG~v~v~KiaGa~A~~G~~l~ev~~~~~~~~~~~~t~gval~~c~~P~-~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (518)
||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+|+ ++|+|+|++||||||||||||||++|.+
T Consensus 148 RGlAGtvlv~KiaGAaAe~G~sL~ev~~~a~~~~~~~~TiGvaL~~ctvP~~~~~~f~L~~~emE~GmGIHGEpG~~r~~ 227 (356)
T PRK11468 148 RGVANTVLIEKLVGAAAERGYSLDQCAELGRKLNNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRP 227 (356)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeeeccccccCCCCCCCcccCCCcEEeccccCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcc---------------------cCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhh
Q 010094 160 LQPVDVVVSHVLKQILSTE---------------------TNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQL 218 (518)
Q Consensus 160 ~~~a~~~v~~ml~~ll~~~---------------------~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~ 218 (518)
+.|+++++++|+++|+++. |. +++++||+|+|||||||+||+||||++++++.++|++
T Consensus 228 ~~~a~elv~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gd~v~vLVNgLG~t~~~El~i~~~~v~~~L~~ 306 (356)
T PRK11468 228 FSSLDQTVDEMFDTLLENGSYHRTLRFWDRQQGSWQEEEQTK-QPLQSGDRVIALVNNLGATPLSELYGVYNRLATRCEQ 306 (356)
T ss_pred CCCHHHHHHHHHHHHHcCcccccchhcccccccccccccccc-CCCCCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999862 22 4888999999999999999999999999999999988
Q ss_pred hcCCeEEEeeecccccccCCCcceEEEeeccHHHHHhhcCcCCCCCCCCC
Q 010094 219 EHGLAVERVYTGSFMTSLDMAGFSISIMKADEVILKHLDATTKAPHWPVG 268 (518)
Q Consensus 219 ~~gi~v~r~~~G~~~TSl~m~GfSiTll~ld~~~~~~ldap~~a~~w~~~ 268 (518)
+ ||+|+|+|+|+|||||||+|||||||++|+++++|||+||++|+|+|+
T Consensus 307 ~-gi~v~r~~vG~~~TSldm~G~SiTLl~lddel~~lldap~~~~~w~~~ 355 (356)
T PRK11468 307 A-GLTIERNLIGAYCTSLDMQGFSITLLKVDDETLALWDAPVHTPALRWG 355 (356)
T ss_pred C-CCEEEEeeeecccccCCCCceEEEEeecCHHHHHHhCCCCCCcccccC
Confidence 8 999999999999999999999999999999999999999999999763
No 9
>PRK14483 DhaKLM operon coactivator DhaQ; Provisional
Probab=100.00 E-value=1.8e-100 Score=778.31 Aligned_cols=260 Identities=37% Similarity=0.588 Sum_probs=253.9
Q ss_pred CccccccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCC-CCCCCC
Q 010094 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPP-PRGIAG 79 (518)
Q Consensus 1 mL~aav~G~vFaSP~~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~g~~v~~v~v~DDva~~~-~~~~~g 79 (518)
||||||||+||||||++||++|||++++++|||+|||||||||||||||+|+|+++||+|++|+|+||||+++ +.+..|
T Consensus 67 mLdAav~G~VFaSPs~~qI~~ai~av~~~~GvL~ivkNYtGDvlnF~mA~E~a~~eGi~v~~VvV~DDva~~~~~~~~~~ 146 (329)
T PRK14483 67 MLTAAVNGSIFTPPTAEQILAATRLVPKGKGVFFIIKNFEADVAEFSAAIQIARQEGRQIKYIIVHDDISVEDDASFNKR 146 (329)
T ss_pred ccceeEeccccCCCCHHHHHHHHHhhcCCCCEEEEecccHHHhhhHHHHHHHHHhCCCcEEEEEeCCcccCCCccccCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987 555669
Q ss_pred ccccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCC-CCCCCCcCCCceeEeccccCCCCcccc
Q 010094 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVA 158 (518)
Q Consensus 80 RRG~aG~v~v~KiaGa~A~~G~~l~ev~~~~~~~~~~~~t~gval~~c~~P~-~~~~~~l~~~e~E~G~GiHgEpG~~~~ 158 (518)
|||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+|| ++|+|+|++||||||||||||||++|.
T Consensus 147 RRGlAGtvlv~KiaGAaA~~G~~L~ev~~~a~~~~~~~~Tigval~~c~vPg~~~~~f~l~~~emE~GmGIHGEpG~~r~ 226 (329)
T PRK14483 147 RRGVAGTVLLHKILGAAALEGASLDELEQLGLSLTENIATLGVALSPANLPVAGLPSFDLNEDEISYGIGIHGEPGYRKE 226 (329)
T ss_pred CCchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeecccccccCCCCCCCcccCCCcEEeccccCCCCcccCC
Confidence 9999999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCC
Q 010094 159 DLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDM 238 (518)
Q Consensus 159 ~~~~a~~~v~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSl~m 238 (518)
++.|+++++++|+++|+++ +++++||+|+|||||||+||+|||||+++++.++|+++ ||+|+|+|+|+|||||||
T Consensus 227 ~~~~a~~l~~~l~~~ll~~----~~~~~gd~v~vlVN~LG~ts~~El~i~~~~v~~~L~~~-gi~v~r~~vG~~~TSldm 301 (329)
T PRK14483 227 PFSSSEILAIELVNKLKSK----YRWQKGDNFILLINGLGATTLMEQYIFANDIRRLLELE-GLQITFVKVGTLLTSLDM 301 (329)
T ss_pred CCCCHHHHHHHHHHHHHhh----cCcCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEeEeecccCccCC
Confidence 9999999999999999986 68899999999999999999999999999999999888 999999999999999999
Q ss_pred CcceEEEeec-cHHHHHhhcCcCCCCCC
Q 010094 239 AGFSISIMKA-DEVILKHLDATTKAPHW 265 (518)
Q Consensus 239 ~GfSiTll~l-d~~~~~~ldap~~a~~w 265 (518)
+|||||||++ |++|++|||+||++|+|
T Consensus 302 ~G~SiTLl~l~d~el~~~ldap~~~~~w 329 (329)
T PRK14483 302 KGISLTLLKVKDPDWLDWLKAPTRAAAW 329 (329)
T ss_pred CccEEEEEeCCcHHHHHHhcCCCCCCCC
Confidence 9999999999 66999999999999999
No 10
>PF02733 Dak1: Dak1 domain; InterPro: IPR004006 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the kinase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 1UN8_A 1UN9_B 3PNM_A 1UOD_B 3PNO_D 3PNK_A 3PNQ_B 1OI2_B 1OI3_A 3PNL_A ....
Probab=100.00 E-value=1.2e-101 Score=788.62 Aligned_cols=267 Identities=53% Similarity=0.860 Sum_probs=226.2
Q ss_pred CccccccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCC-CC
Q 010094 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGI-AG 79 (518)
Q Consensus 1 mL~aav~G~vFaSP~~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~g~~v~~v~v~DDva~~~~~~~-~g 79 (518)
||||||||+||||||++||++|||++++++|||+|||||||||||||||+|+|+++||+|++|+|+||||++++++. +|
T Consensus 52 mLdAav~G~VFaSPs~~qI~~ai~~~~~~~Gvl~iv~NYtGD~lNF~~A~E~a~~~Gi~v~~v~v~DDva~~~~~~~~~g 131 (325)
T PF02733_consen 52 MLDAAVCGDVFASPSADQILAAIKAVDSGKGVLLIVKNYTGDVLNFGMAAEKARAEGIKVEMVIVGDDVASAPSKNSLVG 131 (325)
T ss_dssp SBSEEEEEEETS---HHHHHHHHHHH-SSS-EEEEEESSHHHHHHHHHHHHHHHHTT--EEEEEE--B-SSSSSTTS-SS
T ss_pred ccceEeeCCCcCCCCHHHHHHHHHhccCCCCEEEEEecchHHHhhHHHHHHHHHhCCCCEEEEEecCccccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998775 99
Q ss_pred ccccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCC-CCCCCCcCCCceeEeccccCCCCcccc
Q 010094 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVA 158 (518)
Q Consensus 80 RRG~aG~v~v~KiaGa~A~~G~~l~ev~~~~~~~~~~~~t~gval~~c~~P~-~~~~~~l~~~e~E~G~GiHgEpG~~~~ 158 (518)
|||+||+||||||+||+||+|+||+||++++++++++++||||+|+|||+|+ ++|+|+|++||||||||||||||++|.
T Consensus 132 RRGlAG~v~v~KiaGAaAe~G~~L~ev~~~~~~~~~~~~Tigval~~c~~Pg~~~~~f~L~~~emE~GmGIHGEpG~~r~ 211 (325)
T PF02733_consen 132 RRGLAGTVLVHKIAGAAAERGASLDEVKELAEKANDNLRTIGVALSPCTVPGRGKPSFELPEDEMEIGMGIHGEPGVERI 211 (325)
T ss_dssp S---TTHHHHHHHHHHHHHTT--HHHHHHHHHHHHTTEEEEEEEEE--EETTTCSSSS-B-TTEEEETE-TTS---SEEE
T ss_pred cccccchhHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhceeeeeccCcCCCCCCCCcccCCCCCEEeccccCCCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred cCCC-HHHHHHHHHHHHHhcc---cCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhh-hhhcCCeEEEeeecccc
Q 010094 159 DLQP-VDVVVSHVLKQILSTE---TNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNL-QLEHGLAVERVYTGSFM 233 (518)
Q Consensus 159 ~~~~-a~~~v~~ml~~ll~~~---~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L-~~~~gi~v~r~~~G~~~ 233 (518)
++.| +++++++|+++|+++. |+|++++++|+++|||||||+||+||||++++++.++| +++ ||+|+|+|+|+||
T Consensus 212 ~~~~~a~elv~~ml~~ll~~~~~~r~~~~~~~gd~v~llVNnLG~ts~lEl~ii~~~v~~~L~~~~-gi~v~r~~vG~~~ 290 (325)
T PF02733_consen 212 KLKPSADELVDEMLDKLLDDLDPDRAFLPLKEGDEVALLVNNLGGTSQLELYIIAREVLEQLEEEK-GIKVVRVYVGNFM 290 (325)
T ss_dssp E--B-HHHHHHHHHHHHHHCCHCCEEEHTG-TT-EEEEEEEE-BSS-HHHHHHHHHHHHHHH-HHT-TEEEEEEEEE-SS
T ss_pred CCCCcHHHHHHHHHHHHhccCcccccccccCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHHhc-CceEEEeEEEccc
Confidence 9999 9999999999999874 67899999999999999999999999999999999999 666 9999999999999
Q ss_pred cccCCCcceEEEeeccHHHHHhhcCcCCCCCCCCC
Q 010094 234 TSLDMAGFSISIMKADEVILKHLDATTKAPHWPVG 268 (518)
Q Consensus 234 TSl~m~GfSiTll~ld~~~~~~ldap~~a~~w~~~ 268 (518)
|||||+|||||||++|+++++|||+||++|+|+|+
T Consensus 291 TSLdm~GfSiTLl~ld~e~~~~~~ap~~~pa~~~g 325 (325)
T PF02733_consen 291 TSLDMAGFSITLLKLDDELKELLDAPTDTPAWRWG 325 (325)
T ss_dssp --TTBEEEEEEEEEETSHHHHHHHS-EESSS-EE-
T ss_pred CCCCCceeEEEeeecCHHHHHHhcCcccCccCCCC
Confidence 99999999999999999999999999999999873
No 11
>COG2376 DAK1 Dihydroxyacetone kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.2e-75 Score=591.99 Aligned_cols=256 Identities=46% Similarity=0.729 Sum_probs=248.4
Q ss_pred CccccccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCC-CCC
Q 010094 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRG-IAG 79 (518)
Q Consensus 1 mL~aav~G~vFaSP~~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~g~~v~~v~v~DDva~~~~~~-~~g 79 (518)
||+|+++|++|+||+++||+++|+++..++|++++++||+||+|||+||+|+++++|++|+.++|.|||++.++++ .++
T Consensus 67 ml~aa~~g~if~sP~~~~il~ai~~a~~g~ggl~ig~nY~gd~mnf~~A~e~a~~~gi~v~~v~v~ddva~~~~rg~~~~ 146 (323)
T COG2376 67 MLDAALVGEIFTSPSPDQILKAIGAALLGKGGLASGPNYGGDFMNFGMAAEGADAEGIKVLTVVVNDDVAVIQSRGKAEG 146 (323)
T ss_pred HHHHHhcccccCCCCHHHHHHHHHHHhcCCeeEEEecchHHHHHHHHHHHhhhhhcCCceEEEEeecccccccccccccc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999998754 799
Q ss_pred ccccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCCCCCCCCcCCCceeEeccccCCCCccccc
Q 010094 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (518)
Q Consensus 80 RRG~aG~v~v~KiaGa~A~~G~~l~ev~~~~~~~~~~~~t~gval~~c~~P~~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (518)
|||++|+||||||+||+|++|+||+++.+++++++++++|+||+|++|++|.... |++++||||+|+|||||||++|++
T Consensus 147 rrgtagdvlv~ki~gaaa~~g~~l~~~~~~a~~a~~~~~s~Gv~lt~~~vp~~Gr-f~~~~gE~elG~gihGe~g~~~~~ 225 (323)
T COG2376 147 RRGTAGDVLVPKIAGAAAERGLSLDEVKAVALKAIDNAASIGVALTPCTVPTKGR-ASLGLGERSLGHGIHGEPGVRREI 225 (323)
T ss_pred CCceeeeehHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHHHhcCcccccccCc-cccCCCCEeeccccCCCCcchHHh
Confidence 9999999999999999999999999999999999999999999999999999444 999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCC
Q 010094 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (518)
Q Consensus 160 ~~~a~~~v~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSl~m~ 239 (518)
++++++++++|+++|+++ ++++ |+|+|||||||+||++|||++++.|.++|+++ ||+|+|+++|+|||||||+
T Consensus 226 l~s~~e~~~el~~~l~~~-----~~~~-~~v~~lvn~lG~tp~~el~~~~~~v~~~l~~~-~i~i~~~~~G~~~Tsl~m~ 298 (323)
T COG2376 226 LKSADELAKELVDKLLAE-----KLEQ-DEVAVLVNGLGATPLMELYILYNRVARLLAAK-GITIERTLVGNYMTSLDMA 298 (323)
T ss_pred HHhHHHHHHHHHHHHhcc-----cCCC-CcEEEEecCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEeeecceecccccC
Confidence 999999999999999986 5667 99999999999999999999999999999999 9999999999999999999
Q ss_pred cceEEEeeccHHHHHhhcCcCCCCCC
Q 010094 240 GFSISIMKADEVILKHLDATTKAPHW 265 (518)
Q Consensus 240 GfSiTll~ld~~~~~~ldap~~a~~w 265 (518)
||||||+++|++|++|||+||++ .|
T Consensus 299 G~sitl~~~d~~~~~~~~~p~~~-~~ 323 (323)
T COG2376 299 GFSITLLKLDDELLDLLDAPVDT-RW 323 (323)
T ss_pred CceEEEEeCCHHHHHHhcCcCCC-CC
Confidence 99999999999999999999999 65
No 12
>PRK10005 dihydroxyacetone kinase subunit DhaL; Provisional
Probab=100.00 E-value=2.9e-53 Score=412.77 Aligned_cols=206 Identities=25% Similarity=0.350 Sum_probs=195.9
Q ss_pred cHHHHHHHHHHHHHHHHHhHHhhhhccCCCCCCchhHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhcCCchhh
Q 010094 303 QGHVLEVTIEAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGI 382 (518)
Q Consensus 303 ~~~~~~~~l~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~ga~ai~~~l~~~~~~~~~~~~l~~ia~a~~~~~GGtSG~ 382 (518)
+...+++||.++++.|++++++||+||+++||||||+||.+|++++.+.++ .++..++.++|..+++++++.|||||||
T Consensus 4 ~~~~~~~~l~~~~~~l~~~~~~Lt~lD~~iGDGD~G~~m~~G~~av~~~l~-~~~~~d~~~~l~~~g~~~~~~~GGtsG~ 82 (210)
T PRK10005 4 SRTQIVNWLTRCGDIFTEESDYLTGLDREIGDADHGLNMNRGFSKVVEKLP-AIADKDIGFILKNTGMTLLSSVGGASGP 82 (210)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHhccccCccHHHHHHHHHHHHHHHhh-ccccCCHHHHHHHHHHHHHHHcCCccHH
Confidence 456789999999999999999999999999999999999999999999998 3667899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010094 383 LYHIFCKAAYAKLKASSKSGITSKQWAEALEASIAAVSKYGGATAGYRTMLDALIPAAAVLQERLSAGIDPSTAFILSSE 462 (518)
Q Consensus 383 Lys~~f~~~a~~l~~~~~~~~~~~~~~~al~~a~~~i~~~g~A~~GDkTMlDaL~Pa~~al~~~~~~~~~~~~~l~~A~~ 462 (518)
||++||+++++.+++. ++++.++|+++|..++++|++||+++||||||||+|+|++++|++..+.+.++.++|+++++
T Consensus 83 Lyg~~f~~~~~~l~~~--~~~~~~~~~~al~~~~~~i~~~G~A~~GdkTmlDaL~Pa~~al~~~~~~~~~~~~~l~~a~~ 160 (210)
T PRK10005 83 LYGTFFIRAAQATQAR--QSLTLEELYQMFRDGADGVISRGKAEPGDKTMCDVWVPVVESLRQSSEQNLSVPAALNAAVS 160 (210)
T ss_pred HHHHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHcCCCCCCchhHhhHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999999999999875 67999999999999999999999999999999999999999999988888999999999999
Q ss_pred HHHHHHHhCcchhhhhccccccCCccCCCCCCchHHHHHHHHHHHHHHHH
Q 010094 463 AAIAGAESTKHMQAQAGRSTYISPEILASVPDPGAMAAAAWYRAAALAVK 512 (518)
Q Consensus 463 aA~~gae~T~~m~A~~GRAsY~gers~g~~pDpGA~av~~il~al~~~~~ 512 (518)
+|++|+++|++|.|++|||+|+|||++|+ |||||+++++||+++++.++
T Consensus 161 aA~~gae~T~~m~A~~GRAsy~gers~G~-~DPGA~s~~~i~~al~~~~~ 209 (210)
T PRK10005 161 IAESAAQSTITMQARKGRASYLGERSIGH-QDPGATSVMFMMQALALAAK 209 (210)
T ss_pred HHHHHHHHHhhcccccCchhhhccccCCC-CCcCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999965 59999999999999988764
No 13
>TIGR02365 dha_L_ycgS dihydroxyacetone kinase, phosphoprotein-dependent, L subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the subunit homologous to the E. coli YcgS subunit.
Probab=100.00 E-value=1.7e-50 Score=389.42 Aligned_cols=192 Identities=30% Similarity=0.454 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHhHHhhhhccCCCCCCchhHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhcCCchhhHHHHH
Q 010094 308 EVTIEAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGILYHIF 387 (518)
Q Consensus 308 ~~~l~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~ga~ai~~~l~~~~~~~~~~~~l~~ia~a~~~~~GGtSG~Lys~~ 387 (518)
++||.++++.|++++++||+||++|||||||+||.+|++++.+.+++ .+..++.++|..++++++..+|||||||||+|
T Consensus 2 ~~~~~~~~~~l~~~~~~L~~LD~~vGDGD~G~nm~~g~~ai~~~l~~-~~~~~~~~~l~~~~~~~~~~~gGtSG~l~~~~ 80 (194)
T TIGR02365 2 LNWLKNCGDLIIENKEYLTELDRAIGDGDHGINMARGFSEVKEKLDA-FKDKTIGEILKNTGMTLISKVGGASGPLYGTA 80 (194)
T ss_pred HHHHHHHHHHHHHhHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 67999999999999999999999999999999999999999999973 56679999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 010094 388 CKAAYAKLKASSKSGITSKQWAEALEASIAAVSKYGGATAGYRTMLDALIPAAAVLQERLSAGIDPSTAFILSSEAAIAG 467 (518)
Q Consensus 388 f~~~a~~l~~~~~~~~~~~~~~~al~~a~~~i~~~g~A~~GDkTMlDaL~Pa~~al~~~~~~~~~~~~~l~~A~~aA~~g 467 (518)
|+++++.++++ ++++..+|+++|+.+++.+++||+++||||||||+|+|+++++++.. ++.++|++++++|+++
T Consensus 81 f~~~~~~l~~~--~~~~~~~~~~al~~a~~~i~~~g~a~~GdkTmlD~l~pa~~al~~~~----~~~~~l~~a~~aA~~g 154 (194)
T TIGR02365 81 FLKASKALKDD--EILDAEDLAEILQAGLEGIQSRGKATPGEKTMVDVWAPVVEALRKAA----DEPDALAAAREAAEQG 154 (194)
T ss_pred HHHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHcC----CHHHHHHHHHHHHHHH
Confidence 99999999875 68999999999999999999999999999999999999999998753 8899999999999999
Q ss_pred HHhCcchhhhhccccccCCccCCCCCCchHHHHHHHHHHH
Q 010094 468 AESTKHMQAQAGRSTYISPEILASVPDPGAMAAAAWYRAA 507 (518)
Q Consensus 468 ae~T~~m~A~~GRAsY~gers~g~~pDpGA~av~~il~al 507 (518)
+++|++|+|++|||+|+|||++|+ |||||+++++||++|
T Consensus 155 ~e~T~~m~a~~GRA~y~ge~s~G~-~DpGA~~~~~~l~al 193 (194)
T TIGR02365 155 AEATKDMQATKGRASYLGERSIGH-IDPGATSSYYLFQAL 193 (194)
T ss_pred HHhcccchhccCccccccccccCC-CCccHHHHHHHHHHh
Confidence 999999999999999999999965 599999999999987
No 14
>PF02734 Dak2: DAK2 domain; InterPro: IPR004007 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the predicted phosphatase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 3CR3_B 1UN8_A 1UN9_B 3PNL_B 2BTD_A.
Probab=100.00 E-value=1.9e-45 Score=349.01 Aligned_cols=175 Identities=41% Similarity=0.561 Sum_probs=154.6
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhccCCCCCCHHHHHH
Q 010094 331 KVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGILYHIFCKAAYAKLKASSKSGITSKQWAE 410 (518)
Q Consensus 331 ~vGDGD~G~tm~~ga~ai~~~l~~~~~~~~~~~~l~~ia~a~~~~~GGtSG~Lys~~f~~~a~~l~~~~~~~~~~~~~~~ 410 (518)
+|||||||+||++++++|++.+++..+..++.++|..+++++++.+|||||+||++||+++++.+++. ++++.++|.+
T Consensus 1 ~vGDGD~G~nm~~~~~ai~~~l~~~~~~~~~~~~l~~~~~~~~~~~gGssG~L~~~~f~~~a~~l~~~--~~~~~~~~~~ 78 (175)
T PF02734_consen 1 PVGDGDHGTNMARGARAIKEALDDLPPEDDPGKLLKAIAMALLSGAGGSSGPLYSQFFMGAAKALKGK--EELDAEDLAE 78 (175)
T ss_dssp CTSSS-HHHHHHHHHHHHHHHHHCCSCTSSHHHHHHHHHHHHHHHT-CTHHHHHHHHHHHHHHHCHTT--SECCHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhccC--CCCCHHHHHH
Confidence 69999999999999999999998422678999999999999999999999999999999999999886 6799999999
Q ss_pred HHHHHHHHHHHHhCCCCCcchhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcchhhhhccccccCCccCC
Q 010094 411 ALEASIAAVSKYGGATAGYRTMLDALIPAAAVLQERLSAGIDPSTAFILSSEAAIAGAESTKHMQAQAGRSTYISPEILA 490 (518)
Q Consensus 411 al~~a~~~i~~~g~A~~GDkTMlDaL~Pa~~al~~~~~~~~~~~~~l~~A~~aA~~gae~T~~m~A~~GRAsY~gers~g 490 (518)
+|+++++++++||+++||||||||+|+|++++|++..+ +.++.++|++++++|++++++|++|++++|||+|++||++|
T Consensus 79 a~~~~~~~i~~~g~a~~GdkTmlD~L~pa~~al~~~~~-~~~~~~~l~~a~~aA~~g~e~T~~~~a~~GRAsy~~e~s~g 157 (175)
T PF02734_consen 79 AFEAALEAIQARGGAKPGDKTMLDALIPAAEALEEAKD-GKSLAEALEAAAEAAEEGAEATKDMLAKLGRASYLGERSIG 157 (175)
T ss_dssp HHHHHHHHHHHHH---TTSSSTHHHHHHHHHHHHCCCC-T--HHHHHHHHHHHHHHHHHHHCCS---SSGGGGGGGGGTT
T ss_pred HHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHHHHhccccchhhhhccccCC
Confidence 99999999999999999999999999999999998665 88999999999999999999999999999999999999996
Q ss_pred CCCCchHHHHHHHHHHHHH
Q 010094 491 SVPDPGAMAAAAWYRAAAL 509 (518)
Q Consensus 491 ~~pDpGA~av~~il~al~~ 509 (518)
+ |||||+++++||++|++
T Consensus 158 ~-~DpGA~~~~~~~~~l~~ 175 (175)
T PF02734_consen 158 V-VDPGAVAVALILEALAE 175 (175)
T ss_dssp S---HHHHHHHHHHHHHHT
T ss_pred C-CCccHHHHHHHHHHhhC
Confidence 5 59999999999999974
No 15
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=100.00 E-value=5.6e-37 Score=333.77 Aligned_cols=195 Identities=18% Similarity=0.197 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHHHHhHHhhhhccC-CCCCCchhHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhcCCchhhHHH
Q 010094 307 LEVTIEAAAEAVVNLRDRLNEWDS-KVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGILYH 385 (518)
Q Consensus 307 ~~~~l~~~~~~li~~e~~Ln~LD~-~vGDGD~G~tm~~ga~ai~~~l~~~~~~~~~~~~l~~ia~a~~~~~GGtSG~Lys 385 (518)
|++|+..+++.|++++++||+||+ +|||||||+||.+|++++.+.+++ .+..++.+++..+++.++..+|||||+|||
T Consensus 1 ~~~~l~~~a~~l~~~~~~Ln~LdvfpVgDGDtGtNM~~t~~a~~~~l~~-~~~~~~~~~~~~~a~~~l~garGnSGvIls 79 (530)
T TIGR03599 1 LADMIRSGANNLENNAEEINALNVFPVPDGDTGTNMLLTMTSAVKEIEK-LEEGSVGEVAKALAKGLLMGARGNSGVILS 79 (530)
T ss_pred CHHHHHHHHHHHHHhHHHHHHhcCCccCCcChHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 478999999999999999999999 899999999999999999999983 566789999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 010094 386 IFCKAAYAKLKASSKSGITSKQWAEALEASIAAVSKYGGATAGYRTMLDALIPAAAVLQERLSAGIDPSTAFILSSEAAI 465 (518)
Q Consensus 386 ~~f~~~a~~l~~~~~~~~~~~~~~~al~~a~~~i~~~g~A~~GDkTMlDaL~Pa~~al~~~~~~~~~~~~~l~~A~~aA~ 465 (518)
+||+++++.++++ ++++..+|+++|+.|++.++++ ..+||||||||+|+|+++++++....+.++.++|++++++|+
T Consensus 80 q~f~g~a~~l~~~--~~~~~~~l~~al~~a~~~a~~a-v~~pgegTmLdvl~~aaea~~~~~~~~~~~~e~l~~a~~aA~ 156 (530)
T TIGR03599 80 QIFRGFAKALEDK--EELDAEDLAAAFQEAVETAYKA-VMKPVEGTILTVLREAAEAAEKAAEEGDDLEEVMEAAVEAAE 156 (530)
T ss_pred HHHHHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Confidence 9999999999875 6899999999999999999975 566999999999999999999887788899999999999999
Q ss_pred HHHHhCcchhhhhccccccCCccCCCCCCchHHHHHHHHHHHHHHHHHH
Q 010094 466 AGAESTKHMQAQAGRSTYISPEILASVPDPGAMAAAAWYRAAALAVKDM 514 (518)
Q Consensus 466 ~gae~T~~m~A~~GRAsY~gers~g~~pDpGA~av~~il~al~~~~~~~ 514 (518)
+++++|++|+|+++. .|+ |||||+++++||++|.+.+++.
T Consensus 157 ~al~~T~~mla~lk~--------~Gv-vD~Ga~gl~~ile~l~~~l~g~ 196 (530)
T TIGR03599 157 KALARTPELLPVLKE--------AGV-VDSGGQGLVVILEGMLAALTGE 196 (530)
T ss_pred HHHHhChhhhhhhcc--------CCC-CCCcHHHHHHHHHHHHHHhcCC
Confidence 999999999999953 355 5999999999999999998764
No 16
>COG1461 Predicted kinase related to dihydroxyacetone kinase [General function prediction only]
Probab=99.96 E-value=5.7e-29 Score=266.19 Aligned_cols=202 Identities=18% Similarity=0.173 Sum_probs=188.8
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHhhhhccC-CCCCCchhHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhcCCch
Q 010094 302 QQGHVLEVTIEAAAEAVVNLRDRLNEWDS-KVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTS 380 (518)
Q Consensus 302 ~~~~~~~~~l~~~~~~li~~e~~Ln~LD~-~vGDGD~G~tm~~ga~ai~~~l~~~~~~~~~~~~l~~ia~a~~~~~GGtS 380 (518)
.+...|.+|+..+|+.|.++.+++|+||. ||+|||+|+||..+++.+.+.+.+ .+..++.++.+.++..++..++|||
T Consensus 5 i~~~~~~~m~~~ga~~l~~~~~~vN~LNVFPVPDGDTGTNM~~Tm~~~~~~~~~-~~~~~~~~l~~~~s~g~LmGARGNS 83 (542)
T COG1461 5 IDGSLFAEMIIAGANNLSKNADEVNALNVFPVPDGDTGTNMSMTMTSAIKELEN-LKSSSIGELAKILSKGLLMGARGNS 83 (542)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhhcCcccCCCCCCcccHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHhhhccCcc
Confidence 45778999999999999999999999999 999999999999999999999984 5668899999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010094 381 GILYHIFCKAAYAKLKASSKSGITSKQWAEALEASIAAVSKYGGATAGYRTMLDALIPAAAVLQERLSAGIDPSTAFILS 460 (518)
Q Consensus 381 G~Lys~~f~~~a~~l~~~~~~~~~~~~~~~al~~a~~~i~~~g~A~~GDkTMlDaL~Pa~~al~~~~~~~~~~~~~l~~A 460 (518)
|+||||+|++++..+.+. .+++.++|++||..|++..++ ...+|.++|||.+++-+++++....++-.++.+++.+|
T Consensus 84 GVIlSQilrGf~~~~~~~--~ei~~~~la~Af~~ave~AYk-AVmkPVEGTILTV~R~~ae~~~~~~~~~~~~~~~~~~a 160 (542)
T COG1461 84 GVILSQILRGFAAAIADK--EEIDIEDLAKAFQRAVEVAYK-AVMKPVEGTILTVIRSAAEAAKKKAKNHDDFEKLMEAA 160 (542)
T ss_pred hhhHHHHHHHHHHhcccc--cccCHHHHHHHHHHHHHHHHH-HhcCCcCceEEEehHHHHHHHHhhhccchhHHHHHHHH
Confidence 999999999999999876 799999999999999999888 68899999999999999999998777889999999999
Q ss_pred HHHHHHHHHhCcchhhhhccccccCCccCCCCCCchHHHHHHHHHHHHHHHHHHhh
Q 010094 461 SEAAIAGAESTKHMQAQAGRSTYISPEILASVPDPGAMAAAAWYRAAALAVKDMYQ 516 (518)
Q Consensus 461 ~~aA~~gae~T~~m~A~~GRAsY~gers~g~~pDpGA~av~~il~al~~~~~~~~~ 516 (518)
+++|+++.+.|++|+|.+..+ |.+ |+|+.++++|+++|.+++++.+.
T Consensus 161 ~~~A~~aL~kTP~~LpvLKea--------GVV-DSGg~Gl~~ileG~~~a~~g~~~ 207 (542)
T COG1461 161 VKAAEKALEKTPEMLPVLKEA--------GVV-DSGGKGLVYILEGFLSALTGEPV 207 (542)
T ss_pred HHHHHHHHHhCHHHHHHHHHc--------Cee-cCCCceEEehHHHHHHHhcCCCc
Confidence 999999999999999999765 666 99999999999999999987543
No 17
>COG2376 DAK1 Dihydroxyacetone kinase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=4.7e-22 Score=203.26 Aligned_cols=202 Identities=17% Similarity=0.122 Sum_probs=175.1
Q ss_pred HHHHHHHHHHhHHhhhh--ccCCCCCCchhHHHH--HHHHHHHHHhhh-cCCCCCHHHHHHHHHHHHHHhcCCchhhHHH
Q 010094 311 IEAAAEAVVNLRDRLNE--WDSKVGDGDCGSTMY--RGATAILEDKKK-YYPLNDAAETVNEIGASIRRVMGGTSGILYH 385 (518)
Q Consensus 311 l~~~~~~li~~e~~Ln~--LD~~vGDGD~G~tm~--~ga~ai~~~l~~-~~~~~~~~~~l~~ia~a~~~~~GGtSG~Lys 385 (518)
+..+.+..+.+++++++ +|...||||||.||+ +|+..+.+++.. .+.+.++.++|..++++.....||.||++|+
T Consensus 27 ~~~i~~~~~~~r~~l~~kV~dvsgGgsgHep~~ag~vG~gml~aa~~g~if~sP~~~~il~ai~~a~~g~ggl~ig~nY~ 106 (323)
T COG2376 27 LDLIEENGIANREYLSEKVLDVSGGGSGHEPNMAGYVGFGMLDAALVGEIFTSPSPDQILKAIGAALLGKGGLASGPNYG 106 (323)
T ss_pred HHhcccchhhhcccCcccceeeeecCCccchhhhccccHHHHHHHhcccccCCCCHHHHHHHHHHHhcCCeeEEEecchH
Confidence 33333344589999999 999999999999999 999999999874 2345569999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Q 010094 386 IFCKAAYAKLKASSKSGITSKQWAEALEASIAAVSKYGGATAGYRTMLDALIPAAAVLQERLSA--GIDPSTAFILSSEA 463 (518)
Q Consensus 386 ~~f~~~a~~l~~~~~~~~~~~~~~~al~~a~~~i~~~g~A~~GDkTMlDaL~Pa~~al~~~~~~--~~~~~~~l~~A~~a 463 (518)
..|+.++.+.+.. ++.+.+.+...+...++.++++|++++|+|||.|+|+|.++.+.+.... +.....+++...++
T Consensus 107 gd~mnf~~A~e~a--~~~gi~v~~v~v~ddva~~~~rg~~~~rrgtagdvlv~ki~gaaa~~g~~l~~~~~~a~~a~~~~ 184 (323)
T COG2376 107 GDFMNFGMAAEGA--DAEGIKVLTVVVNDDVAVIQSRGKAEGRRGTAGDVLVPKIAGAAAERGLSLDEVKAVALKAIDNA 184 (323)
T ss_pred HHHHHHHHHHhhh--hhcCCceEEEEeeccccccccccccccCCceeeeehHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence 9999999999765 4566677888888999999999999999999999999999999876432 35556677888899
Q ss_pred HHHHHHhCcchhhhhccccc-cCCccCCCCCCchHHHHHH-HHHHHHHHHHHHh
Q 010094 464 AIAGAESTKHMQAQAGRSTY-ISPEILASVPDPGAMAAAA-WYRAAALAVKDMY 515 (518)
Q Consensus 464 A~~gae~T~~m~A~~GRAsY-~gers~g~~pDpGA~av~~-il~al~~~~~~~~ 515 (518)
+..|++.|+.+.|..||++| .||+++|+. |||+.++.+ +|+.+.+.+.+.+
T Consensus 185 ~s~Gv~lt~~~vp~~Grf~~~~gE~elG~g-ihGe~g~~~~~l~s~~e~~~el~ 237 (323)
T COG2376 185 ASIGVALTPCTVPTKGRASLGLGERSLGHG-IHGEPGVRREILKSADELAKELV 237 (323)
T ss_pred HHHHHhcCcccccccCccccCCCCEeeccc-cCCCCcchHHhHHhHHHHHHHHH
Confidence 99999999999999999999 999999887 999999999 9999988776543
No 18
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=87.43 E-value=26 Score=39.42 Aligned_cols=179 Identities=23% Similarity=0.261 Sum_probs=115.5
Q ss_pred ccccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhc-CCcEEEEEecccccCCCCCCCCCccc
Q 010094 4 AAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSE-GYKVEIVIVGDDCALPPPRGIAGRRG 82 (518)
Q Consensus 4 aav~G~vFaSP~~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~-g~~v~~v~v~DDva~~~~~~~~gRRG 82 (518)
..++|.==.-||+.+|++||+.++... |+++-+|. |.=||+|+|... +.+|.+| |.+ .=-.|
T Consensus 337 ~vi~ggqt~nPS~~dll~ai~~~~a~~-V~iLPNn~-----nii~aA~qa~~~~~~~v~vv---------pT~--s~~qg 399 (530)
T TIGR03599 337 VVIEGGQTMNPSTEDILKAIEKVNAKN-VFVLPNNK-----NIILAAEQAAELADKNVVVI---------PTK--TIVQG 399 (530)
T ss_pred EEEeCCCCCCCCHHHHHHHHHhCCCCe-EEEecCCc-----cHHHHHHHHHHHhCCcEEEE---------eCC--CHHHH
Confidence 345565434799999999999987765 77777773 888999998764 4444433 222 12233
Q ss_pred cchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccccee--ccccccCCCCCCCCcCCCceeEeccccCCCCcccccC
Q 010094 83 LAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVA--LSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADL 160 (518)
Q Consensus 83 ~aG~v~v~KiaGa~A~~G~~l~ev~~~~~~~~~~~~t~gva--l~~c~~P~~~~~~~l~~~e~E~G~GiHgEpG~~~~~~ 160 (518)
++.. +.=+...++++-.+.-..+..+++|.-|. -..-++.+ ..+.+|++ |||-+.-=+.. =
T Consensus 400 iaAl--------~~fdp~~~~~~n~~~M~ea~~~v~~g~vt~A~rd~~~~~----~~i~~gd~---igi~~~~i~~~--~ 462 (530)
T TIGR03599 400 LAAL--------LVFDPEASLEDNKEAMEEAIKAVRSGEVTYAVRDTKING----LEIKKGDF---LGIVDGKIIAV--G 462 (530)
T ss_pred HHHH--------HhhCCCCCHHHHHHHHHHHHhcCeEEEEEEEeccceecC----eeecCCCE---eEecCCeEEEe--c
Confidence 3321 12277899999999999999999887663 22222222 22333333 44433221111 2
Q ss_pred CCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhc-CCeEEEeeec
Q 010094 161 QPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEH-GLAVERVYTG 230 (518)
Q Consensus 161 ~~a~~~v~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~-gi~v~r~~~G 230 (518)
++..+.+..++++|++ ++.+++-++-|=+.+.. ..+.+.++++++| ++.+.-.+-|
T Consensus 463 ~d~~~~~~~ll~~l~~---------~~~elvTi~~G~~~~~~-----~~~~l~~~i~~~~~~veve~~~Gg 519 (530)
T TIGR03599 463 KDPEDAAKKLLDKLLD---------EDSELITIFYGEDATEE-----EAEELEAFIEEKYPDVEVEIYEGG 519 (530)
T ss_pred CCHHHHHHHHHHHHhc---------CCCeEEEEEECCCCCHH-----HHHHHHHHHHhhCCCcEEEEEECC
Confidence 3678889999999865 46789888888777665 4567777888877 7888755544
No 19
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=84.08 E-value=11 Score=41.74 Aligned_cols=176 Identities=16% Similarity=0.156 Sum_probs=100.0
Q ss_pred CHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhhHHHHHh
Q 010094 15 PVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIAG 94 (518)
Q Consensus 15 ~~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~g~~v~~v~v~DDva~~~~~~~~gRRG~aG~v~v~KiaG 94 (518)
++..|.+||+.++++.|||+++= ---=+||-.||.|+...+ .+-++.+ .| . | .+ =|++ .+-
T Consensus 48 ~~~~i~~ai~~~~~~~gv~v~~D-lGSa~~~~e~a~e~~~~~-~~~~v~~-~~-a--p----lV-----Eg~~----~aa 108 (473)
T PRK11377 48 DAVKVMEAIESVADADHVLVMMD-MGSALLSAETALELLDPE-IAAKVRL-CA-A--P----LV-----EGTL----AAT 108 (473)
T ss_pred CHHHHHHHHHhccCCCCEEEEEe-cchHHhHHHHHHHhhccc-ccceEEE-ec-C--c----hH-----hHHH----HHH
Confidence 56899999999999999988875 445689999999998543 2223322 22 1 1 11 1222 244
Q ss_pred HHHHcCCCHHHHHHHHHHHHhhhc-ccceeccccccCCC-CCCCCcCCCceeEeccccCCCCcccccCCCHHHHHHHHHH
Q 010094 95 AAAAAGLSLADVAAEAKRASEMVG-TMGVALSVCTLPGQ-VTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLK 172 (518)
Q Consensus 95 a~A~~G~~l~ev~~~~~~~~~~~~-t~gval~~c~~P~~-~~~~~l~~~e~E~G~GiHgEpG~~~~~~~~a~~~v~~ml~ 172 (518)
..|..|.+|++|.+.++.+...-. .+|... ..|.. .+.-..+.+..+.=+-|.++-|..-+| +..+++..-+
T Consensus 109 v~a~~g~~l~~v~~~~~~a~~~k~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~n~~GLHARP---Aa~lv~~a~~ 182 (473)
T PRK11377 109 VSAASGADIDKVIFDAMHALEAKREQLGLPS---SDTEISDTCPAYDEEARSLSVVIKNRNGLHVRP---ASRLVYTLST 182 (473)
T ss_pred HHhccCCCHHHHHHHHHHHhHHHHHhcCCCC---CCcccCCCCCcccccceEEEEEEcCCCCCcHhH---HHHHHHHHhh
Confidence 577899999999999998765433 333322 11111 111112446666666667777764332 2333333222
Q ss_pred HH----Hh-cc-----cC-----CCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcC
Q 010094 173 QI----LS-TE-----TN-----YVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHG 221 (518)
Q Consensus 173 ~l----l~-~~-----~~-----~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~g 221 (518)
+= +. .. ++ -+..+.|+++.+.++|= . |.-. ...+.+++++.||
T Consensus 183 f~s~I~i~~~g~~vdakSi~~lm~Lg~~~Gd~v~i~a~G~----D-e~~A-l~~l~~l~~~~fg 240 (473)
T PRK11377 183 FNADMLLEKNGKCVTPESLNQIALLQVRYNDTLRLIAKGP----E-AEEA-LIAFRQLAEDNFG 240 (473)
T ss_pred CCCeEEEEECCeEEchHhHHHHHhcCCCCCCEEEEEEeCc----C-HHHH-HHHHHHHHHhccC
Confidence 10 00 00 00 14456799999999983 2 2222 2555566655544
No 20
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=75.13 E-value=15 Score=33.37 Aligned_cols=79 Identities=28% Similarity=0.344 Sum_probs=55.4
Q ss_pred CHHHHHHHHHhccC-CCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhhHHHHH
Q 010094 15 PVDSILAGIHAVTG-PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIA 93 (518)
Q Consensus 15 ~~~~i~~ai~~~~~-~~Gvl~iv~NYtGD~lnFg~A~e~a~~~g~~v~~v~v~DDva~~~~~~~~gRRG~aG~v~v~Kia 93 (518)
++++|.++|+.+++ +.|||+++== -|=+||..+|.++.+.+.. +.|..-| . | ++.-=++
T Consensus 44 ~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs~~n~e~a~~~l~~~~~--~~v~g~n-l--P--------------lvega~~ 103 (125)
T TIGR02364 44 SPDKIIEAIEKADNEADGVLIFYDL-GSAVMNAEMAVELLEDEDR--DKVHLVD-A--P--------------LVEGAFA 103 (125)
T ss_pred hHHHHHHHHHHhcCCCCCEEEEEcC-CCcHhHHHHHHHHhccccc--cEEEEec-h--h--------------HHHHHHH
Confidence 57899999999966 8899888765 8999999999999865533 2222221 1 1 3333333
Q ss_pred hH-HHHcCCCHHHHHHHHHHH
Q 010094 94 GA-AAAAGLSLADVAAEAKRA 113 (518)
Q Consensus 94 Ga-~A~~G~~l~ev~~~~~~~ 113 (518)
.| .+..|.+|+||.+.++..
T Consensus 104 aa~~~~~g~~l~~v~~~~~~~ 124 (125)
T TIGR02364 104 AAVEAQVGASIEQVLAEALQA 124 (125)
T ss_pred HHHHHcCCCCHHHHHHHHHhc
Confidence 33 456899999999888753
No 21
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=70.82 E-value=5.1 Score=42.40 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=44.3
Q ss_pred ccccCCCCCCCCHHHHHHHHHhccCCCCeEEEeecccc----ccccHHHHHHHHHhcCCc
Q 010094 4 AAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTG----DRLNFGLAAEQAKSEGYK 59 (518)
Q Consensus 4 aav~G~vFaSP~~~~i~~ai~~~~~~~Gvl~iv~NYtG----D~lnFg~A~e~a~~~g~~ 59 (518)
.+..||+|+|....|+-.|++.+....|||+..- ..| |-=+||+++++.+.-|++
T Consensus 252 ec~tgd~l~~~~~~qL~~Al~~I~~eGGvlvYLr-qegr~an~~RdygigaqIL~dLGi~ 310 (339)
T PRK09314 252 IGSDFELLTSDKFSELLKAIEYLKKNGGVLIFLN-TESKENNQVKDYGIGAQILKYLGIK 310 (339)
T ss_pred cCChHHhhCCCcHHHHHHHHHHHHHcCCEEEEEc-CCCCCcccccchhHHHHHHHHCCCC
Confidence 3567999999988999999999875559987553 333 578999999999999975
No 22
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=63.60 E-value=5.1 Score=38.08 Aligned_cols=62 Identities=19% Similarity=0.363 Sum_probs=37.8
Q ss_pred ccccCCCCCC---CCHHHHHHHHHhcc-CCCCeEEEeec-------------------------------cccccccHHH
Q 010094 4 AAICGDVFAS---PPVDSILAGIHAVT-GPMGCLLIVTN-------------------------------YTGDRLNFGL 48 (518)
Q Consensus 4 aav~G~vFaS---P~~~~i~~ai~~~~-~~~Gvl~iv~N-------------------------------YtGD~lnFg~ 48 (518)
.++.||+|-| ....|+-.|++.+. .+.|||+.+.+ +..|-=+||+
T Consensus 51 ~~~~~Dvf~~~~~d~~~~L~~Am~~I~~~G~GVlVyL~~~~~g~~l~~kl~~~~~~~~g~~~~~a~~~~~~~~d~R~ygi 130 (169)
T PF00925_consen 51 ECLTGDVFGSLRCDCGWQLDKAMRRIAEEGRGVLVYLRQEGRGIGLLNKLRAYNLQDEGYDTVEANRALGFPEDLRDYGI 130 (169)
T ss_dssp --HHHHTS--SSSSHHHHHHHHHHHHHHHTSEEEEEE--TTTTT-HHHHHHHHHHHTTS--HHHHHHCTT--S----THH
T ss_pred cccHhhhcCCCCCCCcHHHHHHHHHHHHcCCEEEEEEcCCCcchhHHHHHHHHHhhhcCCcchhhhhcccCccccccHHH
Confidence 3567999998 56788888998886 57799999831 1256678999
Q ss_pred HHHHHHhcCCcEEEEEec
Q 010094 49 AAEQAKSEGYKVEIVIVG 66 (518)
Q Consensus 49 A~e~a~~~g~~v~~v~v~ 66 (518)
+++..+.-|++ +|.+.+
T Consensus 131 gaqIL~dLGV~-~~rLLt 147 (169)
T PF00925_consen 131 GAQILRDLGVK-KMRLLT 147 (169)
T ss_dssp HHHHHHHTT---SEEEE-
T ss_pred HHHHHHHcCCC-EEEECC
Confidence 99999988876 444443
No 23
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=59.29 E-value=10 Score=40.63 Aligned_cols=59 Identities=14% Similarity=0.150 Sum_probs=39.9
Q ss_pred ccccCCCCCCC----CHHHHHHHHHhccC-CCCeEEEeecccc------------------------ccccHHHHHHHHH
Q 010094 4 AAICGDVFASP----PVDSILAGIHAVTG-PMGCLLIVTNYTG------------------------DRLNFGLAAEQAK 54 (518)
Q Consensus 4 aav~G~vFaSP----~~~~i~~ai~~~~~-~~Gvl~iv~NYtG------------------------D~lnFg~A~e~a~ 54 (518)
.+..||||-|. .-.|...|++.+.. +.|||+...|-.| |--+||+|+++.+
T Consensus 256 ecltgDv~gS~~c~d~g~qL~~Al~~I~~eG~GvlvYLr~~~~~~gl~~kl~a~~~~~~~~~~~d~r~~r~ygigAqILr 335 (369)
T PRK12485 256 IDPLRDLVGAEYAGPANWTLWAALQKVAEEGHGVVVVLANHESSQALLERIPQLTQPPRQYQRSQSRIYSEVGTGAQILQ 335 (369)
T ss_pred ccchhhhhcCCCCCccHHHHHHHHHHHHHhCCEEEEEecCCCchhhHHHHHHHHHhHhhCCCcccchhhhhhhHHHHHHH
Confidence 46789999884 34579999999764 5599886653222 0115778888888
Q ss_pred hcCCc-EEE
Q 010094 55 SEGYK-VEI 62 (518)
Q Consensus 55 ~~g~~-v~~ 62 (518)
.-|++ |+.
T Consensus 336 ~LGV~kirL 344 (369)
T PRK12485 336 DLGVGKLRH 344 (369)
T ss_pred HcCCCEEEE
Confidence 87764 443
No 24
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=58.25 E-value=15 Score=35.51 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=25.5
Q ss_pred ccccCCCCCCCCH---HHHHHHHHhcc-CCCCeEEEee
Q 010094 4 AAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVT 37 (518)
Q Consensus 4 aav~G~vFaSP~~---~~i~~ai~~~~-~~~Gvl~iv~ 37 (518)
.+..+|||.+... .|+..|++.+. .+.|||+++.
T Consensus 52 ~~~~~Dvl~~~~~~~~~~L~~Al~~Ia~~g~GVlV~l~ 89 (193)
T cd00641 52 ECLTGDVFGSLRCDCGPQLEEALEEIAEEGGGVLLYLR 89 (193)
T ss_pred cCCHHHHhcCCCCCCcchHHHHHHHHHHhCCEEEEEEC
Confidence 3567899986533 67888999986 5579988775
No 25
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=57.37 E-value=19 Score=32.76 Aligned_cols=77 Identities=27% Similarity=0.332 Sum_probs=57.1
Q ss_pred CHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhhHHHHHh
Q 010094 15 PVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIAG 94 (518)
Q Consensus 15 ~~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~g~~v~~v~v~DDva~~~~~~~~gRRG~aG~v~v~KiaG 94 (518)
+.++|.++|+.+++ .|||+++== -|=.+|-.||.|+...+ .+|++ .| ..+ + =|.+ .|-
T Consensus 44 ~~~~i~~ai~~~~~-dGVlVltDL-Gssp~n~~~a~e~~~~~-~~v~~---~d-aPl------V-----EGa~----~Aa 101 (124)
T PRK14484 44 SFDQIQEAIEKNES-DGVLIFFDL-GSAEMNAEMAIEMLDGE-KKIII---ID-API------V-----EGAF----TAA 101 (124)
T ss_pred hHHHHHHHHHhcCc-CCeEEEEeC-CChHHHHHHHHHhcCCC-CcEEE---EC-CcH------H-----HHHH----HHH
Confidence 57899999999999 999999876 89999999999999655 34443 33 211 1 1222 234
Q ss_pred HHHHcCCCHHHHHHHHHHH
Q 010094 95 AAAAAGLSLADVAAEAKRA 113 (518)
Q Consensus 95 a~A~~G~~l~ev~~~~~~~ 113 (518)
..+..|.+|++|.+.++..
T Consensus 102 v~~~~g~~l~~v~~~~~~~ 120 (124)
T PRK14484 102 VLLSAGASLDEILAELKEL 120 (124)
T ss_pred HHHcCCCCHHHHHHHHHHh
Confidence 5678899999999988864
No 26
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=56.48 E-value=15 Score=35.73 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=26.3
Q ss_pred ccccCCCCCCCCH---HHHHHHHHhcc-CCCCeEEEeec
Q 010094 4 AAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVTN 38 (518)
Q Consensus 4 aav~G~vFaSP~~---~~i~~ai~~~~-~~~Gvl~iv~N 38 (518)
.+..||||.|... .|+..|++.+. .+.|||+.+.+
T Consensus 53 ~~~~~Dvl~~~~~dc~~~L~~Al~~I~~~G~GVlVyL~~ 91 (197)
T PRK00393 53 ECLTGDALFSLRCDCGFQLEAALERIAEEGRGILLYLRQ 91 (197)
T ss_pred ccCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEcC
Confidence 3567899987643 78888999976 56699887743
No 27
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=53.03 E-value=19 Score=34.86 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=25.8
Q ss_pred ccccCCCCCCCCH---HHHHHHHHhcc-CCCCeEEEee
Q 010094 4 AAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVT 37 (518)
Q Consensus 4 aav~G~vFaSP~~---~~i~~ai~~~~-~~~Gvl~iv~ 37 (518)
.+..||||.|... .|+..|++.+. .+.|||+.+.
T Consensus 50 ~~~~~Dvl~~~~~dc~~~L~~al~~i~~~G~GVlVyL~ 87 (191)
T TIGR00505 50 ECLTGDALHSLRCDCGFQLEAALKQIAEEGRGVLIYLR 87 (191)
T ss_pred ccCHHHHhcCCCCCCCchHHHHHHHHHhcCCEEEEEEC
Confidence 3567899987633 78888999876 5669988775
No 28
>TIGR02365 dha_L_ycgS dihydroxyacetone kinase, phosphoprotein-dependent, L subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the subunit homologous to the E. coli YcgS subunit.
Probab=51.59 E-value=2.2e+02 Score=27.55 Aligned_cols=129 Identities=12% Similarity=0.056 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhccCCCCCCchhHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhcCCchhhH
Q 010094 304 GHVLEVTIEAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGIL 383 (518)
Q Consensus 304 ~~~~~~~l~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~ga~ai~~~l~~~~~~~~~~~~l~~ia~a~~~~~GGtSG~L 383 (518)
+..+.+-++.+.+.+. . ..+.|.+..+....++++..... ..-.=.+.+|..++..+... .--+..-
T Consensus 32 G~nm~~g~~ai~~~l~-------~----~~~~~~~~~l~~~~~~~~~~~gG-tSG~l~~~~f~~~~~~l~~~-~~~~~~~ 98 (194)
T TIGR02365 32 GINMARGFSEVKEKLD-------A----FKDKTIGEILKNTGMTLISKVGG-ASGPLYGTAFLKASKALKDD-EILDAED 98 (194)
T ss_pred HHHHHHHHHHHHHHHh-------h----cCCCCHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHhccC-CCCCHHH
Confidence 3445555555555442 1 23467777777777776655531 11112567788888777642 1124577
Q ss_pred HHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhHHHHHHHHHHHHhCCCC
Q 010094 384 YHIFCKAAYAKLKASSKSGITSKQWAEALEASIAAVSKYGGATAGYRTMLDALIPAAAVLQERLSAGID 452 (518)
Q Consensus 384 ys~~f~~~a~~l~~~~~~~~~~~~~~~al~~a~~~i~~~g~A~~GDkTMlDaL~Pa~~al~~~~~~~~~ 452 (518)
|+.+|.++...+......++.-..+.++|..+.+++++.. ++.++|..++++.++..+...+
T Consensus 99 ~~~al~~a~~~i~~~g~a~~GdkTmlD~l~pa~~al~~~~-------~~~~~l~~a~~aA~~g~e~T~~ 160 (194)
T TIGR02365 99 LAEILQAGLEGIQSRGKATPGEKTMVDVWAPVVEALRKAA-------DEPDALAAAREAAEQGAEATKD 160 (194)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHhccc
Confidence 8999999888886432345666789999999999987632 6667776666666665544444
No 29
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=49.85 E-value=27 Score=31.09 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=34.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeec
Q 010094 191 VLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG 230 (518)
Q Consensus 191 ~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G 230 (518)
.+=|..+|+.+.-.---+...+.+.|++++||...|+|+-
T Consensus 60 ~~~l~siG~~~~~~n~~~s~~i~~~l~~~LgIp~dRiYI~ 99 (113)
T PTZ00450 60 YVRVEAWGEYAPSKPKMMTPRITAAITKECGIPAERIYVF 99 (113)
T ss_pred EEEEEEecCcCHHHHHHHHHHHHHHHHHHcCCCcccEEEE
Confidence 3448999999887677788999999999999999999984
No 30
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=48.15 E-value=3.5e+02 Score=28.32 Aligned_cols=174 Identities=20% Similarity=0.280 Sum_probs=100.3
Q ss_pred ccccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhc--CCcEEEEEecccccCCCCCCCCCcc
Q 010094 4 AAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSE--GYKVEIVIVGDDCALPPPRGIAGRR 81 (518)
Q Consensus 4 aav~G~vFaSP~~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~--g~~v~~v~v~DDva~~~~~~~~gRR 81 (518)
..|.|.-=-.||+..|++||+.++... |+++-.| -|.=||+++|... +-+|. +| |.+ .=-.
T Consensus 119 ~vi~ggqt~nPS~~dl~~Ai~~~~a~~-VivLPNn-----~ni~~aa~qa~~~~~~~~v~--Vi-------pTk--s~~q 181 (313)
T PF13684_consen 119 VVISGGQTMNPSTEDLLNAIEKVGADE-VIVLPNN-----KNIILAAEQAARLSEDKNVV--VI-------PTK--SIPQ 181 (313)
T ss_pred EEEeCCCCCCCCHHHHHHHHHhCCCCe-EEEEeCC-----chHHHHHHHHHHHhcCCCEE--EE-------ecC--CHHH
Confidence 345555435799999999999986654 6666655 4667777776643 22222 22 111 2223
Q ss_pred ccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceecc--ccccCCCCCCCCcCCCceeEeccccCCCCccccc
Q 010094 82 GLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALS--VCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (518)
Q Consensus 82 G~aG~v~v~KiaGa~A~~G~~l~ev~~~~~~~~~~~~t~gval~--~c~~P~~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (518)
|++..+ +-+...++++-.+.-+.+..+++|.-+.-. .-.++ .+....|.+ +||.+.--+...
T Consensus 182 GlaAl~--------~~dp~~~~~~n~~~M~ea~~~v~~~~It~Avrd~~~~----~~~i~~gd~---igl~~~~i~~~~- 245 (313)
T PF13684_consen 182 GLAALL--------VFDPEADLEENVEAMTEAAARVRTGEITYAVRDTKIN----GGEIKKGDY---IGLVDGKIVVVG- 245 (313)
T ss_pred HHHHHH--------HhCccCChHHHHHHHHHHHhhCeeeeEEEeeecceec----CcccccCCE---EEEeCCEEEEEc-
Confidence 443211 114445888888888888888887766443 22222 222333333 555444433322
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhc-CCeEE
Q 010094 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEH-GLAVE 225 (518)
Q Consensus 160 ~~~a~~~v~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~-gi~v~ 225 (518)
.+..+.+..+++++++ ++.+++-++=| ..++.-| +..+.++|+++| ++.+.
T Consensus 246 -~~~~~~~~~ll~~l~~---------~~~elvTi~~G-~~~~~~~----a~~l~~~l~~~~p~~eve 297 (313)
T PF13684_consen 246 -KDLEEALKKLLEKLLD---------EDGELVTIYYG-EDVSEEE----AEALAEFLEEKYPDVEVE 297 (313)
T ss_pred -CCHHHHHHHHHHHhhc---------cCCeEEEEEec-CCCCHHH----HHHHHHHHHHHhCCeEEE
Confidence 3477888888888854 36688888877 3344434 444555566655 56655
No 31
>PTZ00375 dihydroxyacetone kinase-like protein; Provisional
Probab=47.86 E-value=1.5e+02 Score=34.01 Aligned_cols=112 Identities=8% Similarity=0.009 Sum_probs=73.9
Q ss_pred CchhHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhc-CCchhhHHHHHHHHHHHHhhccCCCCCCHHHHHHHHH
Q 010094 335 GDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVM-GGTSGILYHIFCKAAYAKLKASSKSGITSKQWAEALE 413 (518)
Q Consensus 335 GD~G~tm~~ga~ai~~~l~~~~~~~~~~~~l~~ia~a~~~~~-GGtSG~Lys~~f~~~a~~l~~~~~~~~~~~~~~~al~ 413 (518)
.|.+..+.....++.+..-. ..-.=.+.+|..++..+.+.. |..+-.-|+.+|.++...+..-.+.++.-+.+.++|.
T Consensus 430 ~~~~~~l~~ig~a~~~~vGG-SSG~Lyg~~f~~aa~~l~~~~~g~~~~~~~a~al~a~~eaI~~rG~Ak~GDKTMlDaL~ 508 (584)
T PTZ00375 430 ANVRKTLTLISKAVADAFGG-SSGPLYGAFLLGGANALAEALNGGNAVDAVRAALAAGSHSIQELGGARVGDRTMVDVLI 508 (584)
T ss_pred CCHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhcCCCCCCeeeeeeHH
Confidence 46777777777776655431 111125678889999987644 3444577899999988888764445677788999999
Q ss_pred HHHHHHHHHhCCCCCcchhhhhHHHHHHHHHHHHh
Q 010094 414 ASIAAVSKYGGATAGYRTMLDALIPAAAVLQERLS 448 (518)
Q Consensus 414 ~a~~~i~~~g~A~~GDkTMlDaL~Pa~~al~~~~~ 448 (518)
-+++++++-.....| .++-++|..++++.++..+
T Consensus 509 Pa~~al~~~~~~~~~-~~~~~~l~~Aa~aA~~Gae 542 (584)
T PTZ00375 509 PFAEALNSCPSVNEA-ASSPELLKACSEEAREAAE 542 (584)
T ss_pred HHHHHHHHhhhcccC-CCHHHHHHHHHHHHHHHHH
Confidence 999998773221123 3666777766666655433
No 32
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=46.92 E-value=18 Score=39.81 Aligned_cols=39 Identities=18% Similarity=0.444 Sum_probs=29.0
Q ss_pred cccccCCCCCCCCH---HHHHHHHHhcc-CCCCeEEEeecccc
Q 010094 3 TAAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVTNYTG 41 (518)
Q Consensus 3 ~aav~G~vFaSP~~---~~i~~ai~~~~-~~~Gvl~iv~NYtG 41 (518)
+.+..||||-|... .|+-+|++.+. .+.|||+..-|-.|
T Consensus 290 Sec~tgDvfgs~rCdCg~qL~~Al~~I~~~G~GVlvYLr~qeg 332 (450)
T PLN02831 290 SECLTGDIFGSARCDCGNQLALAMQLIEKAGRGVLVYLRGHEG 332 (450)
T ss_pred ccCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEcCCCc
Confidence 35678999998754 78989999976 56699887763443
No 33
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=46.85 E-value=65 Score=32.76 Aligned_cols=185 Identities=15% Similarity=0.125 Sum_probs=98.4
Q ss_pred CCCCHHHHHHHHHh-ccCCCC-eEEEe--eccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhh
Q 010094 12 ASPPVDSILAGIHA-VTGPMG-CLLIV--TNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTI 87 (518)
Q Consensus 12 aSP~~~~i~~ai~~-~~~~~G-vl~iv--~NYtGD~lnFg~A~e~a~~~g~~v~~v~v~DDva~~~~~~~~gRRG~aG~v 87 (518)
+.||+.++.+..+. ...+.- ||+|- ...+|=-=|.-+|+++. .+.+|.+ + | -|-.-+|.-
T Consensus 61 S~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~LSgty~~a~~aa~~~--~~~~i~V--i-D-----------S~~~s~g~g 124 (280)
T PF02645_consen 61 SQPSPGEFEEAFEKLLEEGYDEIIVITISSGLSGTYNSARLAAKML--PDIKIHV--I-D-----------SKSVSAGQG 124 (280)
T ss_dssp E---HHHHHHHHHHHHHTTTSEEEEEES-TTT-THHHHHHHHHHHH--TTTEEEE--E-E------------SS-HHHHH
T ss_pred cCCCHHHHHHHHHHHHHCCCCeEEEEeCCcchhhHHHHHHHHHhhc--CcCEEEE--E-e-----------CCCcchhhh
Confidence 35889999999987 555544 66654 34556555666666666 3445433 2 2 133445666
Q ss_pred hHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceecc------ccccCC----------CCCCCCcCCCceeEeccccC
Q 010094 88 LVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALS------VCTLPG----------QVTSDRLGPGKMELGLGIHG 151 (518)
Q Consensus 88 ~v~KiaGa~A~~G~~l~ev~~~~~~~~~~~~t~gval~------~c~~P~----------~~~~~~l~~~e~E~G~GiHg 151 (518)
++..-|-.++++|+|++||.+..++..+++.+.=+-=+ +--++. =+|-..+.+|+++.
T Consensus 125 ~lv~~a~~l~~~G~s~~ei~~~l~~~~~~~~~~f~~~~L~~L~kgGRis~~~a~ig~lL~IkPIl~~~~G~i~~------ 198 (280)
T PF02645_consen 125 LLVLEAAKLIEQGKSFEEIVEKLEELRERTRTYFVVDDLKYLRKGGRISKAAAFIGNLLNIKPILSFDDGEIEP------ 198 (280)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHTEEEEEEES-SHHHHHCTSSGHHHHHHHHCTTEEEEEEEETTEEEE------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhhceEEEEechHHHHHHCCCcCchhhhhhhhhcCcEEEEEECCEEEE------
Confidence 66666779999999999999999999999887643111 001110 01222332233322
Q ss_pred CCCcccccCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCC-eEEEeeec
Q 010094 152 EPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGL-AVERVYTG 230 (518)
Q Consensus 152 EpG~~~~~~~~a~~~v~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi-~v~r~~~G 230 (518)
..+..+.+..++.|++.+... .... ....+.+...- .. |. +.++.+.|+++++. .+....+|
T Consensus 199 -----~~k~Rg~kka~~~l~~~~~~~----~~~~-~~~~i~i~~~~---~~-e~---a~~l~~~l~~~~~~~~~~~~~~~ 261 (280)
T PF02645_consen 199 -----VGKVRGRKKAIKKLIEIIKEE----IKDP-KNYRIAISHAG---NE-EE---AEELKEELKEEFPNAEIIISPIG 261 (280)
T ss_dssp -----EEEESSHHHHHHHHHHHHHHH----HCTG-CGEEEEEEESS----H-HH---HHHHHHHHHHHSTTEEEEEEE--
T ss_pred -----EeeeccHHHHHHHHHHHhhhh----hhcC-CceeEEEEEcC---CH-HH---HHHHHHHHHHhcCCCcEEEEEEC
Confidence 345667778888888887432 1112 23333333332 22 33 34555566666555 55545556
Q ss_pred ccccc
Q 010094 231 SFMTS 235 (518)
Q Consensus 231 ~~~TS 235 (518)
+-+++
T Consensus 262 ~~i~~ 266 (280)
T PF02645_consen 262 PVIGA 266 (280)
T ss_dssp HHHHH
T ss_pred cEEEE
Confidence 55553
No 34
>PRK10005 dihydroxyacetone kinase subunit DhaL; Provisional
Probab=46.05 E-value=2.4e+02 Score=27.77 Aligned_cols=110 Identities=8% Similarity=-0.000 Sum_probs=73.9
Q ss_pred CCchhHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhccCCCCCCHHHHHHHHH
Q 010094 334 DGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGILYHIFCKAAYAKLKASSKSGITSKQWAEALE 413 (518)
Q Consensus 334 DGD~G~tm~~ga~ai~~~l~~~~~~~~~~~~l~~ia~a~~~~~GGtSG~Lys~~f~~~a~~l~~~~~~~~~~~~~~~al~ 413 (518)
+.|-+..+.....++.+.... ..-.=.+.+|..++..+... .--+..-|..+|..+...++...+.++.-+.+.++|.
T Consensus 58 ~~d~~~~l~~~g~~~~~~~GG-tsG~Lyg~~f~~~~~~l~~~-~~~~~~~~~~al~~~~~~i~~~G~A~~GdkTmlDaL~ 135 (210)
T PRK10005 58 DKDIGFILKNTGMTLLSSVGG-ASGPLYGTFFIRAAQATQAR-QSLTLEELYQMFRDGADGVISRGKAEPGDKTMCDVWV 135 (210)
T ss_pred cCCHHHHHHHHHHHHHHHcCC-ccHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHcCCCCCCchhHhhHH
Confidence 457888888877777766541 11122567788888887742 1224567888998888888764445677788999999
Q ss_pred HHHHHHHHHhCCCCCcchhhhhHHHHHHHHHHHHh
Q 010094 414 ASIAAVSKYGGATAGYRTMLDALIPAAAVLQERLS 448 (518)
Q Consensus 414 ~a~~~i~~~g~A~~GDkTMlDaL~Pa~~al~~~~~ 448 (518)
-+++.+++.. ..| .++.++|..++++.++..+
T Consensus 136 Pa~~al~~~~--~~~-~~~~~~l~~a~~aA~~gae 167 (210)
T PRK10005 136 PVVESLRQSS--EQN-LSVPAALNAAVSIAESAAQ 167 (210)
T ss_pred HHHHHHHHHH--hcC-CCHHHHHHHHHHHHHHHHH
Confidence 9999987732 223 3667777777776665433
No 35
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=44.93 E-value=41 Score=29.54 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=35.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeec
Q 010094 190 VVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG 230 (518)
Q Consensus 190 v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G 230 (518)
+.+=|...|+.+....--+++++.+.|++.+|+.+.|+|+-
T Consensus 59 a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lgi~~~rv~I~ 99 (116)
T PTZ00397 59 CFVRVTSIGGISRSNNSSIAAAITKILASHLKVKSERVYIE 99 (116)
T ss_pred EEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEE
Confidence 44447888999987788899999999999999999999984
No 36
>PRK08815 GTP cyclohydrolase; Provisional
Probab=44.75 E-value=18 Score=38.86 Aligned_cols=38 Identities=26% Similarity=0.424 Sum_probs=28.2
Q ss_pred ccccCCCCCCCC---HHHHHHHHHhcc-CCCCeEEEeeccccc
Q 010094 4 AAICGDVFASPP---VDSILAGIHAVT-GPMGCLLIVTNYTGD 42 (518)
Q Consensus 4 aav~G~vFaSP~---~~~i~~ai~~~~-~~~Gvl~iv~NYtGD 42 (518)
.+..||||-|.. -.|.-+|++.+. .+.|||+.+ |-.|-
T Consensus 224 ~c~tgDvfgs~~cdc~~qL~~Al~~I~~~G~GVlvyL-~qegr 265 (375)
T PRK08815 224 SCLTGDLFGSLKCDCGDQLRHGLAKLKELGGGVLLYL-DQEGR 265 (375)
T ss_pred cCcHHHHhcCCCCCCHHHHHHHHHHHHhhCCEEEEEE-cCCCc
Confidence 467899998753 378888999975 667998866 54543
No 37
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=42.39 E-value=96 Score=31.49 Aligned_cols=95 Identities=23% Similarity=0.151 Sum_probs=64.3
Q ss_pred CCCCHHHHHHHHHhcc-CCCCeEEEe--eccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhh
Q 010094 12 ASPPVDSILAGIHAVT-GPMGCLLIV--TNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTIL 88 (518)
Q Consensus 12 aSP~~~~i~~ai~~~~-~~~Gvl~iv--~NYtGD~lnFg~A~e~a~~~g~~v~~v~v~DDva~~~~~~~~gRRG~aG~v~ 88 (518)
+.||+.++.++++... .+.-||+|- ..-+|=.=|+-+|+++.. +++| .|=| -|-.-.|.-+
T Consensus 60 S~ps~~~~~~~~~~l~~~~~~vi~i~iSs~lSgty~~a~~aa~~~~--~~~i---~ViD-----------S~~~s~~~g~ 123 (275)
T TIGR00762 60 SQPSPGEFLELYEKLLEEGDEVLSIHLSSGLSGTYQSARQAAEMVD--EAKV---TVID-----------SKSASMGLGL 123 (275)
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEEcCCchhHHHHHHHHHHhhCC--CCCE---EEEC-----------ChHHHHHHHH
Confidence 3478888888987654 334466553 344555555556655542 2332 2222 2444567778
Q ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccce
Q 010094 89 VNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGV 122 (518)
Q Consensus 89 v~KiaGa~A~~G~~l~ev~~~~~~~~~~~~t~gv 122 (518)
+..-+..+.++|.+++||.+..++..+++.+.=+
T Consensus 124 ~v~~a~~~~~~G~s~~eI~~~l~~~~~~~~~~f~ 157 (275)
T TIGR00762 124 LVLEAAKLAEEGKSLEEILAKLEELRERTKLYFV 157 (275)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhcEEEEE
Confidence 8888999999999999999999999999887633
No 38
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=41.15 E-value=33 Score=37.28 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=26.4
Q ss_pred ccccCCCCCCCC---HHHHHHHHHhcc-CCCCeEEEee
Q 010094 4 AAICGDVFASPP---VDSILAGIHAVT-GPMGCLLIVT 37 (518)
Q Consensus 4 aav~G~vFaSP~---~~~i~~ai~~~~-~~~Gvl~iv~ 37 (518)
.+..||||-|-. ..|+-.|++.+. .+.|||+.+.
T Consensus 257 ~c~tgDvfgs~~cdc~~qL~~Al~~I~~eG~GvlvyL~ 294 (402)
T PRK09311 257 ECLTGDVFGSRRCDCGPQLDAALAQIAEEGRGVVLYMR 294 (402)
T ss_pred cCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEe
Confidence 467899998753 378889999976 5669988776
No 39
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=41.10 E-value=30 Score=37.14 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=39.8
Q ss_pred ccccCCCCCCC---CHHHHHHHHHhcc-CCCCeEEEeecc-cc---------------------ccccHHHHHHHHHhcC
Q 010094 4 AAICGDVFASP---PVDSILAGIHAVT-GPMGCLLIVTNY-TG---------------------DRLNFGLAAEQAKSEG 57 (518)
Q Consensus 4 aav~G~vFaSP---~~~~i~~ai~~~~-~~~Gvl~iv~NY-tG---------------------D~lnFg~A~e~a~~~g 57 (518)
.+..||||-|- ...|+..|++.+. .+.|||+...|- .| |-=+||+|+++.+.-|
T Consensus 256 ~c~tgDvfgs~~cdcg~qL~~al~~I~~~G~GvlvyL~qegrgigl~~k~~~~~~an~~lg~~~d~R~y~igaqIL~~Lg 335 (367)
T PRK14019 256 PLSVLDLLEVGQPTHSWSLDAAMAAIAEAGSGVVVLLNCGDDGEHLLDRFRAEEAAAALKRRPVDYRTYGIGAQILRDLG 335 (367)
T ss_pred ccchHhHhcCCCCCcHHHHHHHHHHHHhcCCEEEEEEccCCchhhHHHhhhhhhhhhhhcCCCcccceehHHHHHHHHcC
Confidence 46689999874 3578999999975 556998876543 12 3456788888888777
Q ss_pred Cc
Q 010094 58 YK 59 (518)
Q Consensus 58 ~~ 59 (518)
++
T Consensus 336 v~ 337 (367)
T PRK14019 336 VG 337 (367)
T ss_pred CC
Confidence 63
No 40
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=40.82 E-value=64 Score=32.73 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEeccccc
Q 010094 12 ASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCA 70 (518)
Q Consensus 12 aSP~~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~g~~v~~v~v~DDva 70 (518)
...+++++-++++.-...+.|++.--||+|.+.+..--++.+++.|+ .++-|++-
T Consensus 138 ~~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~~~dl~~I~~~~~~~g~----~livDeA~ 192 (294)
T cd00615 138 GGIPPETFKKALIEHPDAKAAVITNPTYYGICYNLRKIVEEAHHRGL----PVLVDEAH 192 (294)
T ss_pred CCCCHHHHHHHHHhCCCceEEEEECCCCCCEecCHHHHHHHHHhcCC----eEEEECcc
Confidence 46688999888876334455555556999999999888889988775 45556553
No 41
>COG1416 Uncharacterized conserved protein [Function unknown]
Probab=40.45 E-value=56 Score=29.30 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCCcc
Q 010094 164 DVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMAGF 241 (518)
Q Consensus 164 ~~~v~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSl~m~Gf 241 (518)
.+-+..++..|.+ ++...+.-++.|.+||-|-....+-......-...|.++ |+++. -+|+=|++.+++.=
T Consensus 13 ~~k~~~~l~Nl~N----ll~~~p~~~IeVV~~g~ai~~l~~~~~~~~~~~~~L~~~-GV~~~--aC~nSl~a~~i~~d 83 (112)
T COG1416 13 ESKVNMVLGNLTN----LLEDDPSVEIEVVAHGPAIAFLSEKANIAAVRVAELAQQ-GVEFV--ACGNSLRAHDIDED 83 (112)
T ss_pred HHHHHHHHHHHHH----HhcCCCCceEEEEEeCchhHHhhhhccchhHHHHHHHHC-CCEEE--EecchHHHcCCCHH
Confidence 5666777777755 356667889999999999888888877776566677777 87764 78999999888754
No 42
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=35.94 E-value=62 Score=30.79 Aligned_cols=75 Identities=20% Similarity=0.168 Sum_probs=53.5
Q ss_pred EeccccCCCCcccccCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeE
Q 010094 145 LGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAV 224 (518)
Q Consensus 145 ~G~GiHgEpG~~~~~~~~a~~~v~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v 224 (518)
+|+-.+|.. ....+..+.+++++..++.|... .+..++.++=-.+|| +++-++.++|+++ |.+|
T Consensus 31 ~~i~~~~~~-~~~~~~~si~~la~~y~~~I~~~-------~~~gp~~L~G~S~Gg-------~lA~E~A~~Le~~-G~~v 94 (229)
T PF00975_consen 31 YGIEYPGRG-DDEPPPDSIEELASRYAEAIRAR-------QPEGPYVLAGWSFGG-------ILAFEMARQLEEA-GEEV 94 (229)
T ss_dssp EEECSTTSC-TTSHEESSHHHHHHHHHHHHHHH-------TSSSSEEEEEETHHH-------HHHHHHHHHHHHT-T-SE
T ss_pred EEEecCCCC-CCCCCCCCHHHHHHHHHHHhhhh-------CCCCCeeehccCccH-------HHHHHHHHHHHHh-hhcc
Confidence 444444433 33456689999999999999763 223389999999997 6788889999999 9999
Q ss_pred EEee-ecccccc
Q 010094 225 ERVY-TGSFMTS 235 (518)
Q Consensus 225 ~r~~-~G~~~TS 235 (518)
.+++ +.+..+.
T Consensus 95 ~~l~liD~~~p~ 106 (229)
T PF00975_consen 95 SRLILIDSPPPS 106 (229)
T ss_dssp SEEEEESCSSTT
T ss_pred CceEEecCCCCC
Confidence 8765 4544443
No 43
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=34.55 E-value=2.7e+02 Score=31.10 Aligned_cols=135 Identities=17% Similarity=0.153 Sum_probs=76.3
Q ss_pred HHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEeccccc---CCCCCCCCCccc---cchh-------hh
Q 010094 22 GIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCA---LPPPRGIAGRRG---LAGT-------IL 88 (518)
Q Consensus 22 ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~g~~v~~v~v~DDva---~~~~~~~~gRRG---~aG~-------v~ 88 (518)
+.+.+.++.|-+++.+||-||+|. .+++...-.-|+- -.+.|++|-. .++..+.+-|.- ++|. -.
T Consensus 324 ~~~lvk~P~~FViv~~NlfGDIlS-Dl~A~l~GsLGl~-pSanig~dg~~~~fEa~HGSapd~~~~~iaGk~t~ANPiA~ 401 (483)
T PLN03065 324 VAYAVKSEGGYVWACKNYDGDVQS-DLLAQGFGSLGLM-TSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIAS 401 (483)
T ss_pred HHHHHhCCCCcEEEeeccchhhhh-HHHHHhcCchhhc-ccceeCCCCceEEEecCcCcCccccchhccCCCCCcChHHH
Confidence 346778888999999999999997 5888888777754 4466788853 244344433311 2221 23
Q ss_pred HHHHHhHHHHcCCC--HHHHHHHHHHHHhhhc-ccceeccccccCCCCCCCCcCCCceeEeccccCCCCcccccCCCHHH
Q 010094 89 VNKIAGAAAAAGLS--LADVAAEAKRASEMVG-TMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDV 165 (518)
Q Consensus 89 v~KiaGa~A~~G~~--l~ev~~~~~~~~~~~~-t~gval~~c~~P~~~~~~~l~~~e~E~G~GiHgEpG~~~~~~~~a~~ 165 (518)
+.=.+..+.-.|.. -+++.+.|+++-+.+. |+.- | .-+- .+|.-+||. ...+....+-.|
T Consensus 402 IlA~ammL~hlg~ld~~~~l~~~A~~Le~Av~~tie~--------G-~~T~-------DLg~~~~G~-~~~~~~~~~T~e 464 (483)
T PLN03065 402 IFAWTRGLEHRAKLDKNEELLDFVHKLESACIETVES--------G-KMTK-------DLAILIHGP-KVSREFYLNTEE 464 (483)
T ss_pred HHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHc--------C-Cccc-------ccccccCCC-cccCCCCcCHHH
Confidence 33344455555552 2344555555544432 2211 1 0011 234446772 223455667778
Q ss_pred HHHHHHHHHH
Q 010094 166 VVSHVLKQIL 175 (518)
Q Consensus 166 ~v~~ml~~ll 175 (518)
..+.+++.|-
T Consensus 465 f~daV~~~L~ 474 (483)
T PLN03065 465 FIDAVAQTLA 474 (483)
T ss_pred HHHHHHHHHH
Confidence 8888888773
No 44
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=34.11 E-value=56 Score=34.78 Aligned_cols=119 Identities=21% Similarity=0.313 Sum_probs=72.1
Q ss_pred HHHHHh-------HHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCCCCCCCCcCCCceeEeccccCCCCcccccCC
Q 010094 89 VNKIAG-------AAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQ 161 (518)
Q Consensus 89 v~KiaG-------a~A~~G~~l~ev~~~~~~~~~~~~t~gval~~c~~P~~~~~~~l~~~e~E~G~GiHgEpG~~~~~~~ 161 (518)
|+||.| .+.++|++-+|+.+-. -.++|| ..-+|++++|||-+=||.-|
T Consensus 10 v~kiFG~~~~~a~~~~~~G~~k~ei~~~t------g~vvGv---------~~~sl~v~~GeIfViMGLSG---------- 64 (386)
T COG4175 10 VYKIFGKNPKRALKLLDQGKSKAEILKKT------GLVVGV---------NDASLDVEEGEIFVIMGLSG---------- 64 (386)
T ss_pred ceeecccCHHHHHHHHHcCCcHHHHHHhh------CcEEee---------ccceeeecCCeEEEEEecCC----------
Confidence 456666 3668899988887532 223333 56689999999999999886
Q ss_pred CHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcC--CCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCC
Q 010094 162 PVDVVVSHVLKQILSTETNYVPITRGNRVVLMING--LGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (518)
Q Consensus 162 ~a~~~v~~ml~~ll~~~~~~~~~~~~~~v~vlvNn--lG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSl~m~ 239 (518)
|-+...-+++++|.++ ..| + ++|+| .-..+.-||--+-++-....-+.|++-|+ .|-|+-.
T Consensus 65 SGKSTLvR~~NrLiep-------t~G-~--ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPh-------rtVl~Nv 127 (386)
T COG4175 65 SGKSTLVRLLNRLIEP-------TRG-E--ILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPH-------RTVLENV 127 (386)
T ss_pred CCHHHHHHHHhccCCC-------CCc-e--EEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccc-------hhHhhhh
Confidence 2345555677777553 222 2 33333 34455556555555444444444455555 4556666
Q ss_pred cceEEEeecc
Q 010094 240 GFSISIMKAD 249 (518)
Q Consensus 240 GfSiTll~ld 249 (518)
+|.+.+=-++
T Consensus 128 ~fGLev~Gv~ 137 (386)
T COG4175 128 AFGLEVQGVP 137 (386)
T ss_pred hcceeecCCC
Confidence 6666666666
No 45
>COG1732 OpuBC Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane]
Probab=33.43 E-value=69 Score=33.47 Aligned_cols=85 Identities=28% Similarity=0.408 Sum_probs=59.1
Q ss_pred ceeccccccCCCCCCCCcCCCceeEeccccCCCCcccccCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCC
Q 010094 121 GVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGAT 200 (518)
Q Consensus 121 gval~~c~~P~~~~~~~l~~~e~E~G~GiHgEpG~~~~~~~~a~~~v~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~t 200 (518)
-++|..|+.|+-.+ ......+-||-.+-.|+ .|+..|+..+++++ | ==+...+|||+|
T Consensus 15 ~~~l~~~s~~~~~~--~~~~~~I~VgsK~~tE~-----------~IL~~m~~~lle~~--------~-~kv~~~~~lG~t 72 (300)
T COG1732 15 LLLLAACSLPGLGS--ASAAKTIVVGSKIFTEQ-----------YILGNILKQLLEKN--------G-IKVEDKTGLGGT 72 (300)
T ss_pred HHHHHHhccccccc--cccCCCEEEecCCCcHH-----------HHHHHHHHHHHHhc--------C-CceeeccCCCch
Confidence 35677899887322 45567777776666554 67888999988751 2 235568899999
Q ss_pred hHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccC
Q 010094 201 PVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLD 237 (518)
Q Consensus 201 s~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSl~ 237 (518)
+. +++.|..- .|++.--|.|+-.+++.
T Consensus 73 ~v---------~~~Al~~G-~IDiYpEYTGt~~~~~l 99 (300)
T COG1732 73 AV---------VRNALKSG-DIDIYPEYTGTALFSFL 99 (300)
T ss_pred HH---------HHHHHHcC-CCCeEeeecchhhhhhc
Confidence 75 34445565 78898889998776654
No 46
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=32.88 E-value=82 Score=30.19 Aligned_cols=83 Identities=18% Similarity=0.379 Sum_probs=48.3
Q ss_pred cCCCCcccccC--CCHHHHHHHHHHHHHhcc------cCCCC-CCCCCeEEEEEcC--------------------CCCC
Q 010094 150 HGEPGAAVADL--QPVDVVVSHVLKQILSTE------TNYVP-ITRGNRVVLMING--------------------LGAT 200 (518)
Q Consensus 150 HgEpG~~~~~~--~~a~~~v~~ml~~ll~~~------~~~~~-~~~~~~v~vlvNn--------------------lG~t 200 (518)
+|..|+.|... ++...+ ++.+.... +.|++ .+.||+=++++|| .||+
T Consensus 42 ~gG~gV~~i~~~~~n~~~i----~e~~~~~~~~~~mvQ~flp~i~~GDkRii~~nG~~~~av~R~P~~gd~R~N~~~Gg~ 117 (173)
T PF02955_consen 42 MGGRGVFRISRDDPNLNSI----LETLTKNGERPVMVQPFLPEIKEGDKRIILFNGEPSHAVRRIPAKGDFRSNLAAGGS 117 (173)
T ss_dssp -TTTT-EEE-TT-TTHHHH----HHHHTTTTTS-EEEEE--GGGGG-EEEEEEETTEE-SEEEEE--SS-S---GGGTSC
T ss_pred CCCcCEEEEcCCCCCHHHH----HHHHHhcCCccEEEEeccccccCCCEEEEEECCEEhHHeecCCCCCCceeeeccCCc
Confidence 44566655443 333444 44444332 34665 5678999999997 5665
Q ss_pred h-----HHHHHHHHHHHHHhhhhhcCCeEEEe-eecccccccC
Q 010094 201 P-----VMELMIAAGKAVPNLQLEHGLAVERV-YTGSFMTSLD 237 (518)
Q Consensus 201 s-----~~El~~~~~~~~~~L~~~~gi~v~r~-~~G~~~TSl~ 237 (518)
. .-+..-+++.+...|.++ |+.-+++ .+|.|+|-.|
T Consensus 118 ~~~~~lt~~e~~i~~~i~~~L~~~-Gl~f~GiDvig~~l~EiN 159 (173)
T PF02955_consen 118 AEPAELTEREREICEQIGPKLRED-GLLFVGIDVIGDKLTEIN 159 (173)
T ss_dssp EEEEE--HHHHHHHHHHHHHHHHT-T--EEEEEEETTEEEEEE
T ss_pred eeecCCCHHHHHHHHHHHHHHhhc-CcEEEEEeccccceEEEe
Confidence 4 346667889999999999 9776663 4588877554
No 47
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=31.56 E-value=53 Score=32.47 Aligned_cols=36 Identities=31% Similarity=0.509 Sum_probs=28.1
Q ss_pred cccCCCCC--------CCCHHHHHHHHHhcc-CCCCeEEEeeccc
Q 010094 5 AICGDVFA--------SPPVDSILAGIHAVT-GPMGCLLIVTNYT 40 (518)
Q Consensus 5 av~G~vFa--------SP~~~~i~~ai~~~~-~~~Gvl~iv~NYt 40 (518)
.++||+|- +|....+.+.++... .+..|.+|.+|+-
T Consensus 37 ~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNHD 81 (241)
T PRK05340 37 YILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNRD 81 (241)
T ss_pred EEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 47899994 466778888887775 4478999999995
No 48
>COG3412 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.33 E-value=80 Score=28.93 Aligned_cols=80 Identities=24% Similarity=0.326 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhhHHHHH
Q 010094 14 PPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIA 93 (518)
Q Consensus 14 P~~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~g~~v~~v~v~DDva~~~~~~~~gRRG~aG~v~v~Kia 93 (518)
-|++.|.+||...+...++|+.+ ---.-+||-.||.|+...+ +.++..+ .| .|- + =|.+ .+
T Consensus 44 Ts~~~I~~aI~~~~~ad~~lif~-DlGSA~mn~e~a~El~d~e-i~~~~~~-~d---aPl----V-----EGa~----~A 104 (129)
T COG3412 44 TSFEKIMEAIEKANEADHVLVFY-DLGSAKLNAEMALELLDKE-IAIKNIL-CD---APL----V-----EGAY----AA 104 (129)
T ss_pred cCHHHHHHHHHhccccCceEEEE-ecchhhhhHHHHHHHhcch-HHHHhhh-cc---cch----h-----hhHH----HH
Confidence 46799999999877777777665 4778899999999999554 4544432 22 221 1 1111 34
Q ss_pred hHHHHcCCCHHHHHHHHHH
Q 010094 94 GAAAAAGLSLADVAAEAKR 112 (518)
Q Consensus 94 Ga~A~~G~~l~ev~~~~~~ 112 (518)
-+.++.|.|++||..-..+
T Consensus 105 aa~~~~ga~~~evi~~~~e 123 (129)
T COG3412 105 AALLQGGASIDEVIAEALE 123 (129)
T ss_pred HHHHhcCCCHHHHHHHHHh
Confidence 4567889999888765543
No 49
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=29.86 E-value=40 Score=36.44 Aligned_cols=39 Identities=15% Similarity=0.276 Sum_probs=27.8
Q ss_pred cccccCCCCCCCCH---HHHHHHHHhccCCCCeEEEeeccccc
Q 010094 3 TAAICGDVFASPPV---DSILAGIHAVTGPMGCLLIVTNYTGD 42 (518)
Q Consensus 3 ~aav~G~vFaSP~~---~~i~~ai~~~~~~~Gvl~iv~NYtGD 42 (518)
+.+..||||-|-.. .|+-.|++.+....|||+. -|..|-
T Consensus 239 Sec~tgDvfgs~~CdCg~qL~~Al~~Ia~eGGvlvY-Lrqegr 280 (387)
T PRK09318 239 SECVTGDTLSSLRCDCGSQLANFLRMISKEGGILIY-LRQEGR 280 (387)
T ss_pred ecccHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEE-ECCCCc
Confidence 35678999998543 7899999998643399864 455643
No 50
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=29.45 E-value=2.5e+02 Score=27.69 Aligned_cols=61 Identities=25% Similarity=0.415 Sum_probs=36.6
Q ss_pred CCCCcccccCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhh-cCCeEE
Q 010094 151 GEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLE-HGLAVE 225 (518)
Q Consensus 151 gEpG~~~~~~~~a~~~v~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~-~gi~v~ 225 (518)
+=||.-.....+...++..+++.|... |=+-+|+||+=|| + .-..+.+.++|..+ .++.+.
T Consensus 72 ~fpGTisl~~~t~~~~l~di~~sl~~~---------Gf~~ivivngHgG--N---~~~l~~~~~~l~~~~~~~~v~ 133 (237)
T PF02633_consen 72 GFPGTISLSPETLIALLRDILRSLARH---------GFRRIVIVNGHGG--N---IAALEAAARELRQEYPGVKVF 133 (237)
T ss_dssp TSTT-BBB-HHHHHHHHHHHHHHHHHH---------T--EEEEEESSTT--H---HHHHHHHHHHHHHHGCC-EEE
T ss_pred CCCCeEEeCHHHHHHHHHHHHHHHHHc---------CCCEEEEEECCHh--H---HHHHHHHHHHHHhhCCCcEEE
Confidence 457876666566677777777777653 5567999999999 2 22345555555555 466654
No 51
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=29.20 E-value=53 Score=28.87 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=33.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeec
Q 010094 191 VLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG 230 (518)
Q Consensus 191 ~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G 230 (518)
.+=|..+|+.+.-+--.++.++.+.|++++||...|+|+=
T Consensus 58 ~v~l~sig~~~~~~n~~~s~~i~~~l~~~LgIp~~Riyi~ 97 (114)
T PF01187_consen 58 FVELKSIGGLDPEQNKKYSAAITEFLEEELGIPPDRIYIN 97 (114)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHHHHHT--GGGEEEE
T ss_pred EEEEEEccCCCHHHHHHHHHHHHHHHHHHhCCCcCceEEE
Confidence 3448899999887777999999999999999999999973
No 52
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=28.97 E-value=3.3e+02 Score=27.75 Aligned_cols=100 Identities=15% Similarity=0.143 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhHH
Q 010094 358 LNDAAETVNEIGASIRRVMGGTSGILYHIFCKAAYAKLKASSKSGITSKQWAEALEASIAAVSKYGGATAGYRTMLDALI 437 (518)
Q Consensus 358 ~~~~~~~l~~ia~a~~~~~GGtSG~Lys~~f~~~a~~l~~~~~~~~~~~~~~~al~~a~~~i~~~g~A~~GDkTMlDaL~ 437 (518)
+..+..+|.+++.++. | -|.=++..+..+...+..-. ....++...++........|..+.+-=.+.+|-+.
T Consensus 12 P~kLn~tL~ala~Al~----G-rG~~lg~~l~~l~~~l~~ln---~~~~~l~~~l~~l~~v~~~~a~aapdL~~~l~~~~ 83 (267)
T PF11887_consen 12 PAKLNATLSALATALD----G-RGEQLGETLDDLNTLLATLN---PRLPQLREDLRNLADVADTYADAAPDLLDALDNLT 83 (267)
T ss_pred HHHHHHHHHHHHHHHc----C-cchhHHHHHHHHHHHHHHHh---ccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4556777777777764 3 34556677777777765521 12245666666666666667666664444444444
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 010094 438 PAAAVLQERLSAGIDPSTAFILSSEAAIAGA 468 (518)
Q Consensus 438 Pa~~al~~~~~~~~~~~~~l~~A~~aA~~ga 468 (518)
...+++.+ +..++..+|..+...+..+.
T Consensus 84 ~~s~tL~~---~~~~L~~lL~~~~~~a~~~~ 111 (267)
T PF11887_consen 84 TTSRTLVD---QRQQLDALLLSATGLADTGT 111 (267)
T ss_pred HHHHHHHH---hHHHHHHHHHHHHHHHHHHH
Confidence 55555443 33445555555544444443
No 53
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=27.58 E-value=1e+02 Score=23.60 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=24.5
Q ss_pred EEeeccccccccHHHHHHHHHhcCCcEEEEEe
Q 010094 34 LIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIV 65 (518)
Q Consensus 34 ~iv~NYtGD~lnFg~A~e~a~~~g~~v~~v~v 65 (518)
+.+-||+| |+..-|.+.+++.|+++..+-.
T Consensus 1 V~vPd~~g--~~~~~a~~~l~~~g~~~~~~~~ 30 (63)
T PF03793_consen 1 VTVPDLVG--MTYDEAKSILEAAGLTVNVVEE 30 (63)
T ss_dssp EEE-TTTT--SBHHHHHHHHHHTT-EEEEEEE
T ss_pred CCCCCcCC--CcHHHHHHHHHHCCCEEEEEEE
Confidence 35789999 9999999999999998877775
No 54
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=25.71 E-value=5.7e+02 Score=24.08 Aligned_cols=72 Identities=18% Similarity=0.220 Sum_probs=50.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcchhhhh
Q 010094 356 YPLNDAAETVNEIGASIRRVMGGTSGILYHIFCKAAYAKLKASSKSGITSKQWAEALEASIAAVSKYGGATAGYRTMLDA 435 (518)
Q Consensus 356 ~~~~~~~~~l~~ia~a~~~~~GGtSG~Lys~~f~~~a~~l~~~~~~~~~~~~~~~al~~a~~~i~~~g~A~~GDkTMlDa 435 (518)
....++.++|..++.. +..=|+.||..+++.+... + ...+.++++.+++.....+.-++-|+ +.
T Consensus 46 y~~tpL~eal~~i~~~--------~~~~~~~~f~~~a~~L~~~--~---~~~~~~~w~~~~~~~~~~~~L~~~d~---e~ 109 (170)
T PF09548_consen 46 YGATPLPEALERISRR--------SEGPIGEFFERVAERLEKN--E---GESFAEAWEEAVEKLLKESALKKEDK---EI 109 (170)
T ss_pred HcCCCHHHHHHHHHhc--------ccchHHHHHHHHHHHHHcC--C---CCCHHHHHHHHHHhhhhcCCCCHHHH---HH
Confidence 3456788888887764 3456889999999999764 2 23478888888887776666665454 45
Q ss_pred HHHHHHHH
Q 010094 436 LIPAAAVL 443 (518)
Q Consensus 436 L~Pa~~al 443 (518)
|..+...|
T Consensus 110 L~~lg~~L 117 (170)
T PF09548_consen 110 LLELGKSL 117 (170)
T ss_pred HHHHHHHH
Confidence 56666666
No 55
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion]
Probab=25.59 E-value=47 Score=34.85 Aligned_cols=47 Identities=21% Similarity=0.259 Sum_probs=31.8
Q ss_pred HhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccC
Q 010094 24 HAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCAL 71 (518)
Q Consensus 24 ~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~g~~v~~v~v~DDva~ 71 (518)
.++.+..|-++-+|||.|||..==+ ++---+-|+=..+++.-|--.+
T Consensus 267 qa~KS~GGfvwAcKNYDGDVqSD~v-AQg~GSLGlMTSVLv~pdGKT~ 313 (422)
T KOG1526|consen 267 QAMKSEGGFVWACKNYDGDVQSDIV-AQGYGSLGLMTSVLVCPDGKTV 313 (422)
T ss_pred HHHhcCCceEEEeecCCCchhhhHH-HhcccchhhheeEEEcCCCCee
Confidence 4556889999999999999976433 3333455666666666554443
No 56
>PF02734 Dak2: DAK2 domain; InterPro: IPR004007 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the predicted phosphatase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 3CR3_B 1UN8_A 1UN9_B 3PNL_B 2BTD_A.
Probab=25.41 E-value=2e+02 Score=27.32 Aligned_cols=110 Identities=15% Similarity=0.063 Sum_probs=63.4
Q ss_pred CCCchhHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q 010094 333 GDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGILYHIFCKAAYAKLKASSKSGITSKQWAEAL 412 (518)
Q Consensus 333 GDGD~G~tm~~ga~ai~~~l~~~~~~~~~~~~l~~ia~a~~~~~GGtSG~Lys~~f~~~a~~l~~~~~~~~~~~~~~~al 412 (518)
.+-|-+..+.....++.+.... ..-.=.+.+|..++..+... --.+-.-|.-+|.++...++.-.+..+.-+.+.++|
T Consensus 27 ~~~~~~~~l~~~~~~~~~~~gG-ssG~L~~~~f~~~a~~l~~~-~~~~~~~~~~a~~~~~~~i~~~g~a~~GdkTmlD~L 104 (175)
T PF02734_consen 27 PEDDPGKLLKAIAMALLSGAGG-SSGPLYSQFFMGAAKALKGK-EELDAEDLAEAFEAALEAIQARGGAKPGDKTMLDAL 104 (175)
T ss_dssp CTSSHHHHHHHHHHHHHHHT-C-THHHHHHHHHHHHHHHCHTT-SECCHHHHHHHHHHHHHHHHHHH---TTSSSTHHHH
T ss_pred CcCCHHHHHHHHHHHHHhhcCC-chHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHH
Confidence 3445566666666655554431 00011556777777777541 113445577777777777765322345556789999
Q ss_pred HHHHHHHHHHhCCCCCcchhhhhHHHHHHHHHHHHh
Q 010094 413 EASIAAVSKYGGATAGYRTMLDALIPAAAVLQERLS 448 (518)
Q Consensus 413 ~~a~~~i~~~g~A~~GDkTMlDaL~Pa~~al~~~~~ 448 (518)
..+.+.+.+. .. ..++.++|.-++++.++..+
T Consensus 105 ~pa~~al~~~---~~-~~~~~~~l~~a~~aA~~g~e 136 (175)
T PF02734_consen 105 IPAAEALEEA---KD-GKSLAEALEAAAEAAEEGAE 136 (175)
T ss_dssp HHHHHHHHCC---CC-T--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---cc-CCCHHHHHHHHHHHHHHHHH
Confidence 9999998772 22 56777777777666665443
No 57
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=25.25 E-value=81 Score=28.11 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=25.8
Q ss_pred CCCCCCCHHHHHHHHHhccCCCCeEEEeecccc
Q 010094 9 DVFASPPVDSILAGIHAVTGPMGCLLIVTNYTG 41 (518)
Q Consensus 9 ~vFaSP~~~~i~~ai~~~~~~~Gvl~iv~NYtG 41 (518)
.|...|+.++.++.......+.+.++|+.|||.
T Consensus 80 ~i~v~~d~~~a~~~~~~~~~~~~~~yil~tYTA 112 (113)
T PF08353_consen 80 KIIVEEDLEEALDAFLIKSDPTDKVYILATYTA 112 (113)
T ss_pred HeEecCCHHHHHHHHHHhcCCCCcEEEEECCcC
Confidence 355578888888886556677888999999994
No 58
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=24.78 E-value=2.4e+02 Score=29.49 Aligned_cols=61 Identities=21% Similarity=0.188 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccC
Q 010094 165 VVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLD 237 (518)
Q Consensus 165 ~~v~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSl~ 237 (518)
+.+.+.|+.+..+ ++-+.|+|.||.=||+.. .=..+++++. .|.++ + |+.++|+.++-|=.
T Consensus 83 ~~~~~~l~~~~~~-------~~vk~vvL~inSPGG~v~-as~~i~~~l~-~l~~~-~--PV~v~v~~~AASGG 143 (317)
T COG0616 83 DDIEEILRAARAD-------PSVKAVVLRINSPGGSVV-ASELIARALK-RLRAK-K--PVVVSVGGYAASGG 143 (317)
T ss_pred HHHHHHHHHHhcC-------CCCceEEEEEECcCCchh-HHHHHHHHHH-HHhhc-C--CEEEEECCeecchh
Confidence 3445566666443 345779999999999876 3334455444 44555 5 88899987776643
No 59
>PF02873 MurB_C: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; InterPro: IPR011601 This entry represents a C-terminal conserved region of UDP-N-acetylenolpyruvoylglucosamine reductase 1.1.1.158 from EC, which is also called UDP-N-acetylmuramate dehydrogenase. It is a part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide, which is a precursor of bacterial peptidoglycan. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 1MBB_A 2Q85_A 2MBR_A 1UXY_A 1MBT_A 1HSK_A 2GQU_A 2GQT_A 3I99_A 3TX1_A.
Probab=24.54 E-value=1e+02 Score=27.20 Aligned_cols=34 Identities=12% Similarity=0.345 Sum_probs=23.8
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEE
Q 010094 192 LMINGLGATPVMELMIAAGKAVPNLQLEHGLAVER 226 (518)
Q Consensus 192 vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r 226 (518)
+||| .|+-+.-+..-+.+.+.+...++|||....
T Consensus 66 fivN-~g~Ata~dv~~Li~~v~~~V~~~~Gi~Le~ 99 (105)
T PF02873_consen 66 FIVN-HGGATAADVLALIEEVRERVKEKFGIELEP 99 (105)
T ss_dssp EEEE--SS--HHHHHHHHHHHHHHHHHHHS--B-B
T ss_pred eEEE-CCCCCHHHHHHHHHHHHHHHHHHHCCeeee
Confidence 4555 688888899999999999999999987654
No 60
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=24.25 E-value=71 Score=36.15 Aligned_cols=38 Identities=18% Similarity=0.335 Sum_probs=28.3
Q ss_pred cccccCCCCCCCC---HHHHHHHHHhcc-CCCCeEEEeecccc
Q 010094 3 TAAICGDVFASPP---VDSILAGIHAVT-GPMGCLLIVTNYTG 41 (518)
Q Consensus 3 ~aav~G~vFaSP~---~~~i~~ai~~~~-~~~Gvl~iv~NYtG 41 (518)
+.+..||||-|-- -.|.-+|++.+. .+.|||+.. |..|
T Consensus 261 SeClTGDvfgS~rCDCg~QL~~AL~~Ia~eG~GVlVYL-rqEG 302 (555)
T PRK09319 261 SECLTGDAFGSLRCDCRMQLEAALKMIENEGEGVVVYL-RQEG 302 (555)
T ss_pred ccCcHHHHhcCCCCCCHHHHHHHHHHHHhcCCEEEEEe-CCCC
Confidence 4577899998864 378999999986 556887755 5554
No 61
>COG1307 DegV Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.21 E-value=6.1e+02 Score=26.13 Aligned_cols=203 Identities=15% Similarity=0.146 Sum_probs=106.0
Q ss_pred CCHHHHHHHHHhccCCC--CeEEEe--eccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhhH
Q 010094 14 PPVDSILAGIHAVTGPM--GCLLIV--TNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILV 89 (518)
Q Consensus 14 P~~~~i~~ai~~~~~~~--Gvl~iv--~NYtGD~lnFg~A~e~a~~~g~~v~~v~v~DDva~~~~~~~~gRRG~aG~v~v 89 (518)
||+..+.++.+...... .||+|- ..-+| .|.. +..|+...-+.++.+++=.... .|.-+.
T Consensus 64 Ps~~~~~~~~~~l~~~g~~~vi~i~iSs~LSg---ty~~-a~~a~~~~~~~~v~viDS~~~s------------~~~g~~ 127 (282)
T COG1307 64 PSPGEFEELFEKLLQKGYDEVISIHISSGLSG---TYQS-AQLAAELVEGAKVHVIDSKSVS------------MGLGFL 127 (282)
T ss_pred cCHHHHHHHHHHHHhCCCcEEEEEEcCCCccH---HHHH-HHHHHHhccCceEEEEcCcchh------------hHHHHH
Confidence 77788888888876543 465553 22333 3545 4445544333444444332222 233455
Q ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHhhhccccee--ccccccCCCCCCC--CcCCCceeEeccccCCCCcc--cccCCCH
Q 010094 90 NKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVA--LSVCTLPGQVTSD--RLGPGKMELGLGIHGEPGAA--VADLQPV 163 (518)
Q Consensus 90 ~KiaGa~A~~G~~l~ev~~~~~~~~~~~~t~gva--l~~c~~P~~~~~~--~l~~~e~E~G~GiHgEpG~~--~~~~~~a 163 (518)
.+=+..++++|.|++|+.+..+++.+++.+.=+. |+++.-=|+=+.. .| -+-.-+=.=+|-|.|.- -.+..+.
T Consensus 128 v~~a~~l~~~G~s~~ei~~~l~~~~~~t~~~~~v~~L~~L~kgGRIs~~~a~l-g~lL~ikPIl~~~~G~~~~~~K~R~~ 206 (282)
T COG1307 128 VLEAAELAKAGKSFEEILKKLEEIREKTKAYFVVDDLDNLVKGGRISKAAAFL-GNLLKIKPILSFEDGELVLLGKVRGQ 206 (282)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhcEEEEEECchhHHHhCCCcchhHHHH-HhhhcceEEEEEeCCEEEEEeecccH
Confidence 5556789999999999999999999998765332 4444433321100 00 00011111133333432 3566777
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCe--EEEeeecc-cccccCCCc
Q 010094 164 DVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLA--VERVYTGS-FMTSLDMAG 240 (518)
Q Consensus 164 ~~~v~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~--v~r~~~G~-~~TSl~m~G 240 (518)
...++.|++.+.+. ..-..+-+ ++++.+-+. | ......+.|.+. ++. +.-...|+ ..|-.+-..
T Consensus 207 kka~~~l~~~~~~~----~~~~~~~~-~~~~~~~~~----e---~~~~l~~~l~~~-~~~~~~~~~~~~~vi~~H~G~ga 273 (282)
T COG1307 207 KKAIKKLIELLKKE----VKDGAGYR-VAVLHGDAP----E---AAEQLKEKLLNK-FIEKDISISELGPVIGTHTGPGA 273 (282)
T ss_pred HHHHHHHHHHHHHH----hccCCceE-EEEEeCCch----h---HHHHHHHHHHhh-cCCCCceeeccCCEEEEEECCCe
Confidence 88888888888764 22122333 444443221 2 334444555555 443 34344443 344555556
Q ss_pred ceEEEe
Q 010094 241 FSISIM 246 (518)
Q Consensus 241 fSiTll 246 (518)
++|.+.
T Consensus 274 ~~i~~~ 279 (282)
T COG1307 274 LGIGVI 279 (282)
T ss_pred EEEEEE
Confidence 666554
No 62
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=23.33 E-value=98 Score=30.39 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=26.6
Q ss_pred cccCCCCCC------CC--HHHHHHHHHhccC-CCCeEEEeecccc
Q 010094 5 AICGDVFAS------PP--VDSILAGIHAVTG-PMGCLLIVTNYTG 41 (518)
Q Consensus 5 av~G~vFaS------P~--~~~i~~ai~~~~~-~~Gvl~iv~NYtG 41 (518)
.++||+|-. |. ..++.+.++.+.. +..|.+|.+|+-.
T Consensus 35 ii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD~ 80 (231)
T TIGR01854 35 YILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRDF 80 (231)
T ss_pred EEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCch
Confidence 478999962 22 3567777777653 5789999999963
No 63
>PRK14479 dihydroxyacetone kinase; Provisional
Probab=22.20 E-value=9.4e+02 Score=27.51 Aligned_cols=117 Identities=15% Similarity=0.090 Sum_probs=73.6
Q ss_pred CchhHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHH
Q 010094 335 GDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGILYHIFCKAAYAKLKASSKSGITSKQWAEALEA 414 (518)
Q Consensus 335 GD~G~tm~~ga~ai~~~l~~~~~~~~~~~~l~~ia~a~~~~~GGtSG~Lys~~f~~~a~~l~~~~~~~~~~~~~~~al~~ 414 (518)
.|.+..+.....++...... ..-.=.+.+|..++..+...- -.+..-|+.+|.++.+.+....+.++.-..+.++|..
T Consensus 417 ~~~~~~l~~i~~all~~~GG-tSG~Lys~~f~~~a~~l~~~~-~l~~~~la~al~~g~~~v~~~G~AkpGDkTMLDaL~P 494 (568)
T PRK14479 417 AGAGSVLAAAGDAWADHAGG-TSGPLWGTALRAAGKALGDKD-EPTAADFAAAVRAAVDAIQELGGAQVGDKTMVDALVP 494 (568)
T ss_pred CCHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHHHHHhcCCCCCCCeeeeeHHH
Confidence 46666666655555444321 001115677888888876421 1245678888888888886432245555678888888
Q ss_pred HHHHHHHHhCCCCCcchhhhhHHHHHHHHHHHHhCCCCHHHH
Q 010094 415 SIAAVSKYGGATAGYRTMLDALIPAAAVLQERLSAGIDPSTA 456 (518)
Q Consensus 415 a~~~i~~~g~A~~GDkTMlDaL~Pa~~al~~~~~~~~~~~~~ 456 (518)
+++++++.. ....++.++|..++++.++..+...++...
T Consensus 495 a~eal~~~~---~~~~~~~~~l~~a~~aA~~gae~T~~m~A~ 533 (568)
T PRK14479 495 FADALEAAA---AAGADLAEAWAAAAEAAEEGAEATADLVPR 533 (568)
T ss_pred HHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHhCchhhhh
Confidence 888887632 224688888988888888776655554433
No 64
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=21.58 E-value=4.7e+02 Score=22.69 Aligned_cols=102 Identities=16% Similarity=0.176 Sum_probs=54.5
Q ss_pred HHHHHHHHhhhcccceeccccccCCCCCCCCcCCCceeEeccccCCCCcccccCCCHHHHHHHHHHHHHhcccCCCCCCC
Q 010094 107 AAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITR 186 (518)
Q Consensus 107 ~~~~~~~~~~~~t~gval~~c~~P~~~~~~~l~~~e~E~G~GiHgEpG~~~~~~~~a~~~v~~ml~~ll~~~~~~~~~~~ 186 (518)
.++|+.+.+.+...|+-..-+.+..-.+..-...+-+=+|..+|+.--. + ..-++.+++.|.. ..+ +
T Consensus 13 ~~~A~~i~~~~~~~g~~v~~~~~~~~~~~~l~~~d~iilgspty~~g~~-----p--~~~~~~f~~~l~~-----~~~-~ 79 (140)
T TIGR01753 13 EEMANIIAEGLKEAGAEVDLLEVADADAEDLLSYDAVLLGCSTWGDEDL-----E--QDDFEPFFEELED-----IDL-G 79 (140)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcccCCHHHHhcCCEEEEEcCCCCCCCC-----C--cchHHHHHHHhhh-----CCC-C
Confidence 3455666666555555433333332222222346788899999864211 1 1233445555432 122 4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEE
Q 010094 187 GNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVE 225 (518)
Q Consensus 187 ~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~ 225 (518)
+.+++++- .|+.+. +..-..+.+.+.|++. |.+++
T Consensus 80 gk~~~vfg--t~g~~~-~f~~~~~~~~~~l~~~-g~~~v 114 (140)
T TIGR01753 80 GKKVALFG--SGDWGY-EFCEAVDDWEERLKEA-GATII 114 (140)
T ss_pred CCEEEEEe--cCCCCc-hhhHHHHHHHHHHHHC-CCEEe
Confidence 66777765 445443 2445667788888777 88764
No 65
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=21.39 E-value=2e+02 Score=29.41 Aligned_cols=106 Identities=21% Similarity=0.167 Sum_probs=61.6
Q ss_pred CCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCC-ccccchhhhHH
Q 010094 12 ASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAG-RRGLAGTILVN 90 (518)
Q Consensus 12 aSP~~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~g~~v~~v~v~DDva~~~~~~~~g-RRG~aG~v~v~ 90 (518)
..|.-++|++.++.. +..=++++.+|++ +. .+....-|+++=.+-...|+.-. ++..| |.-+.|.|=..
T Consensus 206 ~~p~~k~i~~~i~~~-g~~~~lH~cG~~~-~~------~~~l~~~~~d~~~~d~~~dl~~~--~~~~g~~~~i~G~id~~ 275 (330)
T cd03465 206 SLPYLKKVFDAIKAL-GGPVIHHNCGDTA-PI------LELMADLGADVFSIDVTVDLAEA--KKKVGDKACLMGNLDPI 275 (330)
T ss_pred hhHHHHHHHHHHHHc-CCceEEEECCCch-hH------HHHHHHhCCCeEeecccCCHHHH--HHHhCCceEEEeCcChH
Confidence 356778888888764 3344666777765 11 33344445554222222344422 22344 56788888655
Q ss_pred HHHhHHHHcCCCHHHHHHHHHHHHhhhcc--cceecc-ccccCCC
Q 010094 91 KIAGAAAAAGLSLADVAAEAKRASEMVGT--MGVALS-VCTLPGQ 132 (518)
Q Consensus 91 KiaGa~A~~G~~l~ev~~~~~~~~~~~~t--~gval~-~c~~P~~ 132 (518)
..+ ...+-+||.+.++++.+.++. =|.-|+ .|.+|-+
T Consensus 276 ~~l-----~~gt~eei~~~v~~~l~~~~~~~~~~il~~gc~i~~~ 315 (330)
T cd03465 276 DVL-----LNGSPEEIKEEVKELLEKLLKGGGGYILSSGCEIPPD 315 (330)
T ss_pred Hhh-----cCCCHHHHHHHHHHHHHHHhCCCCCEEEeCCCCCCCC
Confidence 221 134669999999999988765 344554 3777754
No 66
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=21.25 E-value=89 Score=28.02 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHhccCCCCeEEEeeccc
Q 010094 13 SPPVDSILAGIHAVTGPMGCLLIVTNYT 40 (518)
Q Consensus 13 SP~~~~i~~ai~~~~~~~Gvl~iv~NYt 40 (518)
+|||+|+..-+-..-+-+|-|++ ||-
T Consensus 85 APsPDq~v~~Ly~cf~~d~~Lvl--~Yc 110 (116)
T KOG3439|consen 85 APSPDQIVGNLYECFGTDGKLVL--NYC 110 (116)
T ss_pred CCCchhHHHHHHHhcCCCCEEEE--EEe
Confidence 69999999999888888887666 774
No 67
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.21 E-value=3.3e+02 Score=27.30 Aligned_cols=54 Identities=22% Similarity=0.278 Sum_probs=33.1
Q ss_pred cccCCCCCCCC--HHH---HHHHHHhcc-CC-CCeEEEeecccc-ccccHHHHHHHHHhcCCcE
Q 010094 5 AICGDVFASPP--VDS---ILAGIHAVT-GP-MGCLLIVTNYTG-DRLNFGLAAEQAKSEGYKV 60 (518)
Q Consensus 5 av~G~vFaSP~--~~~---i~~ai~~~~-~~-~Gvl~iv~NYtG-D~lnFg~A~e~a~~~g~~v 60 (518)
.++||+|=... ... +...++.+. .. -.|++|.+|+-- +++++ ..+..+..|+.|
T Consensus 44 li~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i~GNHD~~~~~~~--~~~l~~~~~v~i 105 (253)
T TIGR00619 44 LVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVISGNHDSAQRLSA--AKKLLIELGVFV 105 (253)
T ss_pred EECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEccCCCChhhccc--chhHHHhCCeEE
Confidence 47899998754 322 234454443 23 689999999963 45554 345566666543
No 68
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=21.06 E-value=1.8e+02 Score=29.47 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=34.9
Q ss_pred cccCCCCC--CC-CHHHHHHHHHhccCCCCeEEEeecccccc--ccHHHHHHHHHhcCCc
Q 010094 5 AICGDVFA--SP-PVDSILAGIHAVTGPMGCLLIVTNYTGDR--LNFGLAAEQAKSEGYK 59 (518)
Q Consensus 5 av~G~vFa--SP-~~~~i~~ai~~~~~~~Gvl~iv~NYtGD~--lnFg~A~e~a~~~g~~ 59 (518)
.++||++. +| ...++.+.++......+|.+|.+|+--.. -+...-.+..+..|+.
T Consensus 85 li~GD~~d~~~~~~~~~~~~~L~~L~~~~pv~~V~GNHD~~~~~~~~~~~~~~l~~~gi~ 144 (271)
T PRK11340 85 LLGGDYVLFDMPLNFSAFSDVLSPLAECAPTFACFGNHDRPVGTEKNHLIGETLKSAGIT 144 (271)
T ss_pred EEccCcCCCCccccHHHHHHHHHHHhhcCCEEEecCCCCcccCccchHHHHHHHHhcCcE
Confidence 46899987 33 34566677777776678999999995221 1122234555666764
No 69
>PRK07198 hypothetical protein; Validated
Probab=20.49 E-value=1.4e+02 Score=32.47 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=27.9
Q ss_pred cccccCCCCCCCCH---HH----HHHHHHhccC-CCCeEEEeecccc
Q 010094 3 TAAICGDVFASPPV---DS----ILAGIHAVTG-PMGCLLIVTNYTG 41 (518)
Q Consensus 3 ~aav~G~vFaSP~~---~~----i~~ai~~~~~-~~Gvl~iv~NYtG 41 (518)
+.+..||||-|-.. .| |-.|++.+.. +.|||+.+.+ .|
T Consensus 246 SeC~tgDVFGSlrCDCg~qL~~aLe~Amk~IaeeG~GVLVYLrQ-EG 291 (418)
T PRK07198 246 DECNGSDVFGSDICTCRPYLTHGIEECIRGAQRGGVGLIVYNRK-EG 291 (418)
T ss_pred ccccccccccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEeCC-CC
Confidence 45678999999865 45 5567777764 8899988864 54
No 70
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=20.20 E-value=2.1e+02 Score=27.25 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=35.5
Q ss_pred cccCCCCCCCCHH--HHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCC
Q 010094 5 AICGDVFASPPVD--SILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGY 58 (518)
Q Consensus 5 av~G~vFaSP~~~--~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~g~ 58 (518)
.++||+|...... .+...++......++.++.+|+-=..-+...-.+..+..|+
T Consensus 37 l~~GD~~~~~~~~~~~~~~~l~~l~~~~~v~~v~GNHD~~~~~~~~~~~~l~~~~v 92 (223)
T cd07385 37 VLTGDLVDGSVDVLELLLELLKKLKAPLGVYAVLGNHDYYSGDEENWIEALESAGI 92 (223)
T ss_pred EEcCcccCCcchhhHHHHHHHhccCCCCCEEEECCCcccccCchHHHHHHHHHcCC
Confidence 3679999876554 56666777767788999999986444333332445555554
Done!