BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010098
         (518 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L7C|A Chain A, Biophysical Studies Of Lipid Interacting Regions Of Dgd2
           In Arabidopsis Thaliana
          Length = 19

 Score = 38.9 bits (89), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/18 (83%), Positives = 17/18 (94%)

Query: 226 KAFTKGAYYIGRMVWSKG 243
           + FTKGAYYIG+MVWSKG
Sbjct: 1   QPFTKGAYYIGKMVWSKG 18


>pdb|1FPN|3 Chain 3, Human Rhinovirus Serotype 2 (Hrv2)
 pdb|1V9U|3 Chain 3, Human Rhinovirus 2 Bound To A Fragment Of Its Cellular
           Receptor Protein
 pdb|3DPR|C Chain C, Human Rhinovirus 2 Bound To A Concatamer Of The Vldl
           Receptor Module V3
 pdb|3TN9|3 Chain 3, X-Ray Structure Of The Hrv2 Empty Capsid (B-Particle)
 pdb|3VDD|C Chain C, Structure Of Hrv2 Capsid Complexed With Antiviral Compound
           Bta798
          Length = 237

 Score = 28.9 bits (63), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 38  ERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDR 80
           +  +++V+PW+S  H +   PG       +    Y+  W + R
Sbjct: 160 QSTISMVVPWISASHYRNTSPG-------RSTSGYITCWYQTR 195


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,731,175
Number of Sequences: 62578
Number of extensions: 657474
Number of successful extensions: 1409
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1408
Number of HSP's gapped (non-prelim): 5
length of query: 518
length of database: 14,973,337
effective HSP length: 103
effective length of query: 415
effective length of database: 8,527,803
effective search space: 3539038245
effective search space used: 3539038245
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)