Query 010098
Match_columns 518
No_of_seqs 416 out of 2036
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 21:01:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010098.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010098hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02501 digalactosyldiacylgly 100.0 9.7E-81 2.1E-85 636.2 44.2 463 6-468 323-791 (794)
2 PLN02846 digalactosyldiacylgly 100.0 4.1E-75 8.9E-80 590.5 42.4 462 1-463 1-462 (462)
3 PLN02871 UDP-sulfoquinovose:DA 100.0 1.6E-37 3.4E-42 325.3 30.3 356 3-395 56-437 (465)
4 TIGR02468 sucrsPsyn_pln sucros 100.0 1.2E-37 2.5E-42 337.3 27.4 381 4-394 168-672 (1050)
5 cd03796 GT1_PIG-A_like This fa 100.0 4.4E-37 9.4E-42 316.1 29.8 349 7-394 1-369 (398)
6 PRK10307 putative glycosyl tra 100.0 5.7E-36 1.2E-40 309.4 27.8 369 6-394 1-409 (412)
7 PRK00654 glgA glycogen synthas 100.0 2.1E-35 4.7E-40 308.7 27.1 373 6-393 1-463 (466)
8 TIGR03449 mycothiol_MshA UDP-N 100.0 3E-35 6.5E-40 303.5 27.8 364 8-394 1-403 (405)
9 cd04962 GT1_like_5 This family 100.0 3.6E-35 7.9E-40 298.9 27.7 350 6-392 1-370 (371)
10 cd03814 GT1_like_2 This family 100.0 3E-34 6.5E-39 290.1 29.1 347 7-391 1-364 (364)
11 TIGR03088 stp2 sugar transfera 100.0 4.1E-34 8.9E-39 291.8 27.6 345 6-393 2-373 (374)
12 PRK15427 colanic acid biosynth 100.0 7.5E-34 1.6E-38 291.5 29.5 266 109-392 110-405 (406)
13 TIGR02472 sucr_P_syn_N sucrose 100.0 2.2E-34 4.7E-39 299.2 24.5 364 7-391 2-439 (439)
14 TIGR02095 glgA glycogen/starch 100.0 5.7E-34 1.2E-38 299.2 26.6 375 6-392 1-472 (473)
15 KOG1111 N-acetylglucosaminyltr 100.0 1.5E-34 3.2E-39 271.2 19.0 348 6-395 1-369 (426)
16 TIGR02149 glgA_Coryne glycogen 100.0 7.3E-34 1.6E-38 291.4 25.8 350 6-393 1-387 (388)
17 cd03792 GT1_Trehalose_phosphor 100.0 3.6E-33 7.9E-38 284.6 29.1 344 7-392 1-371 (372)
18 PLN02939 transferase, transfer 100.0 1.7E-33 3.6E-38 300.5 26.1 384 4-394 480-968 (977)
19 TIGR02470 sucr_synth sucrose s 100.0 4.5E-33 9.8E-38 296.4 28.5 273 116-391 384-746 (784)
20 PLN02316 synthase/transferase 100.0 3.1E-33 6.7E-38 304.0 27.5 365 4-394 586-1035(1036)
21 cd03817 GT1_UGDG_like This fam 100.0 2E-32 4.4E-37 277.2 31.1 352 7-391 1-372 (374)
22 PRK14099 glycogen synthase; Pr 100.0 3E-33 6.6E-38 291.8 24.9 383 4-394 2-480 (485)
23 cd03805 GT1_ALG2_like This fam 100.0 6.6E-33 1.4E-37 284.7 25.7 350 6-386 1-392 (392)
24 cd03802 GT1_AviGT4_like This f 100.0 1.6E-32 3.4E-37 275.3 26.6 320 6-391 1-335 (335)
25 PRK14098 glycogen synthase; Pr 100.0 7.1E-33 1.5E-37 289.4 23.6 384 1-394 1-487 (489)
26 PRK15179 Vi polysaccharide bio 100.0 2.4E-32 5.1E-37 291.5 27.9 279 106-392 389-693 (694)
27 PLN00142 sucrose synthase 100.0 1.7E-32 3.7E-37 291.9 26.7 274 116-392 407-770 (815)
28 cd03816 GT1_ALG1_like This fam 100.0 2.2E-32 4.8E-37 281.9 25.6 360 5-387 3-411 (415)
29 cd03791 GT1_Glycogen_synthase_ 100.0 2.5E-32 5.4E-37 287.6 25.9 371 7-391 1-475 (476)
30 cd03818 GT1_ExpC_like This fam 100.0 4.5E-32 9.7E-37 278.8 27.2 269 114-388 84-396 (396)
31 cd03800 GT1_Sucrose_synthase T 100.0 4.2E-32 9.1E-37 278.9 26.5 357 7-387 8-397 (398)
32 cd03812 GT1_CapH_like This fam 100.0 1.3E-31 2.8E-36 271.2 27.8 328 7-374 1-343 (358)
33 cd03821 GT1_Bme6_like This fam 100.0 3.2E-31 6.9E-36 268.2 30.0 353 7-388 1-375 (375)
34 PRK15484 lipopolysaccharide 1, 100.0 1.5E-31 3.2E-36 272.8 27.6 253 114-392 96-377 (380)
35 cd03801 GT1_YqgM_like This fam 100.0 3E-31 6.6E-36 267.0 29.6 352 7-391 1-374 (374)
36 cd03820 GT1_amsD_like This fam 100.0 2.2E-31 4.8E-36 266.3 28.1 331 7-387 1-347 (348)
37 cd05844 GT1_like_7 Glycosyltra 100.0 1.2E-31 2.7E-36 272.5 26.2 339 7-388 1-366 (367)
38 cd04951 GT1_WbdM_like This fam 100.0 4.8E-31 1E-35 267.0 28.3 336 7-391 1-359 (360)
39 PRK09922 UDP-D-galactose:(gluc 100.0 4.7E-31 1E-35 267.6 27.5 331 6-394 1-357 (359)
40 cd04955 GT1_like_6 This family 100.0 7.9E-31 1.7E-35 265.9 27.5 342 7-391 1-363 (363)
41 cd03807 GT1_WbnK_like This fam 100.0 7.9E-31 1.7E-35 264.3 27.0 342 7-391 1-365 (365)
42 cd03795 GT1_like_4 This family 100.0 7E-31 1.5E-35 265.5 26.2 331 7-382 1-356 (357)
43 cd03822 GT1_ecORF704_like This 100.0 1E-30 2.2E-35 264.6 27.3 337 7-391 1-366 (366)
44 cd03794 GT1_wbuB_like This fam 100.0 9.4E-31 2E-35 266.2 26.2 364 7-387 1-394 (394)
45 TIGR03087 stp1 sugar transfera 100.0 2.7E-30 6E-35 265.6 28.5 361 8-392 1-396 (397)
46 cd03813 GT1_like_3 This family 100.0 5.3E-31 1.1E-35 276.3 23.1 266 116-391 172-475 (475)
47 cd03825 GT1_wcfI_like This fam 100.0 2.6E-30 5.5E-35 262.2 26.7 317 6-392 1-364 (365)
48 PRK15490 Vi polysaccharide bio 100.0 1.5E-30 3.3E-35 265.4 24.4 275 106-393 269-576 (578)
49 cd03798 GT1_wlbH_like This fam 100.0 1.4E-29 3.1E-34 255.6 30.7 354 8-392 1-376 (377)
50 cd03799 GT1_amsK_like This is 100.0 2.5E-30 5.3E-35 261.3 24.7 325 7-385 1-354 (355)
51 cd03808 GT1_cap1E_like This fa 100.0 7.2E-30 1.6E-34 256.5 27.2 335 7-387 1-358 (359)
52 cd03823 GT1_ExpE7_like This fa 100.0 4.6E-30 9.9E-35 258.8 25.5 341 7-391 1-358 (359)
53 cd03809 GT1_mtfB_like This fam 100.0 3E-30 6.4E-35 261.2 23.5 343 7-388 1-365 (365)
54 cd03819 GT1_WavL_like This fam 100.0 4.9E-30 1.1E-34 259.4 24.0 314 20-381 10-354 (355)
55 PLN02275 transferase, transfer 100.0 3.5E-29 7.6E-34 254.6 27.4 244 113-362 96-371 (371)
56 TIGR02918 accessory Sec system 100.0 1.2E-29 2.5E-34 264.8 24.0 265 111-392 205-499 (500)
57 PRK10125 putative glycosyl tra 100.0 3.7E-29 8E-34 256.0 26.8 349 6-392 1-404 (405)
58 cd03811 GT1_WabH_like This fam 100.0 8.2E-29 1.8E-33 248.0 27.9 318 7-367 1-335 (353)
59 cd03806 GT1_ALG11_like This fa 100.0 7.2E-29 1.6E-33 255.7 27.4 196 181-383 189-417 (419)
60 PLN02949 transferase, transfer 100.0 3.2E-28 6.9E-33 251.7 32.1 207 181-394 220-458 (463)
61 cd04946 GT1_AmsK_like This fam 100.0 1.1E-27 2.3E-32 246.5 28.0 254 115-387 125-406 (407)
62 cd03804 GT1_wbaZ_like This fam 100.0 1.2E-26 2.5E-31 234.8 29.3 252 109-386 75-350 (351)
63 cd04949 GT1_gtfA_like This fam 100.0 4.2E-27 9E-32 240.0 20.1 260 112-386 94-372 (372)
64 PHA01630 putative group 1 glyc 99.9 2.1E-26 4.6E-31 228.7 20.1 221 144-392 71-330 (331)
65 PHA01633 putative glycosyl tra 99.9 3E-24 6.5E-29 210.9 23.1 221 143-388 71-335 (335)
66 PRK00726 murG undecaprenyldiph 99.9 4.7E-23 1E-27 209.0 18.5 332 6-391 2-356 (357)
67 PRK13609 diacylglycerol glucos 99.9 1.1E-22 2.3E-27 208.1 19.6 345 1-394 1-373 (380)
68 cd03785 GT1_MurG MurG is an N- 99.9 2E-22 4.4E-27 203.6 19.2 239 106-374 78-336 (350)
69 cd03793 GT1_Glycogen_synthase_ 99.9 9.9E-22 2.1E-26 201.1 23.2 278 111-394 142-588 (590)
70 COG0297 GlgA Glycogen synthase 99.9 1.6E-21 3.5E-26 199.0 23.1 377 6-395 1-480 (487)
71 cd03788 GT1_TPS Trehalose-6-Ph 99.9 8.6E-23 1.9E-27 212.3 14.1 260 117-389 131-458 (460)
72 TIGR01133 murG undecaprenyldip 99.9 7E-22 1.5E-26 199.6 20.1 238 106-374 79-333 (348)
73 cd01635 Glycosyltransferase_GT 99.9 6.5E-21 1.4E-25 179.4 23.6 222 8-348 1-229 (229)
74 PF00534 Glycos_transf_1: Glyc 99.9 5.3E-22 1.2E-26 179.4 11.2 155 220-374 6-170 (172)
75 cd04950 GT1_like_1 Glycosyltra 99.9 3.4E-20 7.4E-25 188.9 25.4 256 115-391 100-370 (373)
76 PRK05749 3-deoxy-D-manno-octul 99.9 1.6E-20 3.5E-25 194.8 21.8 270 108-392 115-419 (425)
77 TIGR02400 trehalose_OtsA alpha 99.9 1.5E-20 3.2E-25 194.1 19.2 257 118-390 128-454 (456)
78 PRK13608 diacylglycerol glucos 99.9 1.6E-20 3.4E-25 192.3 18.6 257 106-393 93-372 (391)
79 PLN02605 monogalactosyldiacylg 99.8 4.4E-20 9.5E-25 188.6 17.4 259 107-389 90-378 (382)
80 PLN03063 alpha,alpha-trehalose 99.8 1.3E-19 2.7E-24 198.4 14.8 265 118-394 148-479 (797)
81 KOG0853 Glycosyltransferase [C 99.8 2.3E-18 5E-23 173.1 14.5 212 182-394 210-469 (495)
82 TIGR00236 wecB UDP-N-acetylglu 99.8 3.3E-17 7.2E-22 166.6 22.1 265 106-388 75-363 (365)
83 PRK14501 putative bifunctional 99.8 5.9E-18 1.3E-22 185.7 14.1 263 118-394 134-464 (726)
84 cd03786 GT1_UDP-GlcNAc_2-Epime 99.7 5.1E-17 1.1E-21 165.1 18.8 261 106-388 77-360 (363)
85 KOG1387 Glycosyltransferase [C 99.7 4.1E-15 8.9E-20 139.8 26.8 270 111-392 144-458 (465)
86 PRK00025 lpxB lipid-A-disaccha 99.7 8.8E-17 1.9E-21 164.4 17.0 245 106-373 74-352 (380)
87 PRK09814 beta-1,6-galactofuran 99.7 5.9E-16 1.3E-20 155.1 19.2 237 109-374 55-310 (333)
88 PF13692 Glyco_trans_1_4: Glyc 99.7 6.4E-17 1.4E-21 139.9 8.0 131 229-364 2-135 (135)
89 COG0438 RfaG Glycosyltransfera 99.7 7.4E-15 1.6E-19 146.3 23.1 205 182-393 151-377 (381)
90 KOG2941 Beta-1,4-mannosyltrans 99.7 3.3E-14 7.1E-19 133.9 22.3 357 6-387 13-436 (444)
91 TIGR02398 gluc_glyc_Psyn gluco 99.6 1.3E-13 2.8E-18 141.9 20.2 182 204-391 255-481 (487)
92 TIGR00215 lpxB lipid-A-disacch 99.6 1.7E-13 3.8E-18 139.6 20.5 204 106-332 78-293 (385)
93 TIGR03713 acc_sec_asp1 accesso 99.5 9.5E-14 2.1E-18 145.3 12.3 157 229-389 319-518 (519)
94 PLN03064 alpha,alpha-trehalose 99.5 6.3E-13 1.4E-17 145.3 18.2 260 118-393 232-562 (934)
95 TIGR02094 more_P_ylases alpha- 99.5 3.7E-12 7.9E-17 135.1 23.4 164 226-390 386-598 (601)
96 PRK12446 undecaprenyldiphospho 99.3 8.1E-11 1.8E-15 118.4 20.0 250 106-390 80-349 (352)
97 COG0707 MurG UDP-N-acetylgluco 99.3 2.5E-10 5.4E-15 113.8 19.8 238 106-374 80-336 (357)
98 PF13524 Glyco_trans_1_2: Glyc 99.3 4.3E-12 9.3E-17 101.8 5.4 85 304-388 1-92 (92)
99 PF05693 Glycogen_syn: Glycoge 99.2 6.5E-10 1.4E-14 114.1 18.3 101 294-394 462-583 (633)
100 cd04299 GT1_Glycogen_Phosphory 99.1 5.1E-09 1.1E-13 113.4 21.6 165 226-391 475-688 (778)
101 TIGR03590 PseG pseudaminic aci 99.1 7.3E-09 1.6E-13 100.9 18.6 261 7-333 1-268 (279)
102 TIGR02919 accessory Sec system 99.1 2E-09 4.3E-14 110.4 13.6 125 229-366 282-413 (438)
103 COG1519 KdtA 3-deoxy-D-manno-o 99.0 6.1E-08 1.3E-12 95.7 20.8 251 108-374 114-398 (419)
104 cd03784 GT1_Gtf_like This fami 98.9 1E-07 2.2E-12 98.2 18.0 120 229-364 240-372 (401)
105 PF13439 Glyco_transf_4: Glyco 98.8 5.3E-09 1.2E-13 94.0 6.7 168 10-212 2-177 (177)
106 TIGR03568 NeuC_NnaA UDP-N-acet 98.8 9.7E-07 2.1E-11 89.4 22.2 261 106-389 82-364 (365)
107 TIGR03492 conserved hypothetic 98.8 1.1E-07 2.3E-12 97.3 15.2 181 174-367 154-367 (396)
108 PF13528 Glyco_trans_1_3: Glyc 98.8 1.5E-07 3.3E-12 93.7 15.9 113 229-361 193-317 (318)
109 PF00982 Glyco_transf_20: Glyc 98.7 2.4E-07 5.2E-12 96.0 16.0 260 117-390 141-472 (474)
110 PRK10117 trehalose-6-phosphate 98.7 2.4E-07 5.3E-12 94.9 15.5 264 118-394 124-455 (474)
111 COG3914 Spy Predicted O-linked 98.7 1E-06 2.2E-11 89.7 18.5 332 4-393 258-614 (620)
112 COG0381 WecB UDP-N-acetylgluco 98.6 1.2E-05 2.5E-10 79.3 21.0 344 5-391 3-369 (383)
113 PF02684 LpxB: Lipid-A-disacch 98.6 9.9E-07 2.1E-11 88.4 13.5 239 106-366 71-342 (373)
114 TIGR01426 MGT glycosyltransfer 98.5 3.1E-05 6.6E-10 79.6 24.3 126 229-366 226-361 (392)
115 PF13579 Glyco_trans_4_4: Glyc 98.5 6.1E-07 1.3E-11 79.0 8.5 140 20-195 1-143 (160)
116 COG0380 OtsA Trehalose-6-phosp 98.5 1.2E-05 2.5E-10 82.4 18.5 261 118-391 148-478 (486)
117 PF04007 DUF354: Protein of un 98.4 4.5E-05 9.8E-10 75.5 21.4 217 106-364 72-310 (335)
118 COG0763 LpxB Lipid A disacchar 98.4 1.2E-06 2.5E-11 86.0 9.2 206 107-331 75-289 (381)
119 PLN02205 alpha,alpha-trehalose 98.4 7.1E-06 1.5E-10 91.0 16.5 260 119-392 203-551 (854)
120 PF13477 Glyco_trans_4_2: Glyc 98.4 2.7E-06 6E-11 73.5 10.5 137 7-189 1-139 (139)
121 TIGR00661 MJ1255 conserved hyp 98.3 0.00016 3.6E-09 72.0 22.7 118 230-367 190-317 (321)
122 PF13844 Glyco_transf_41: Glyc 98.3 6.3E-06 1.4E-10 84.3 12.2 169 220-392 276-466 (468)
123 PF02350 Epimerase_2: UDP-N-ac 98.2 9.3E-06 2E-10 81.5 11.0 240 106-364 56-318 (346)
124 PHA03392 egt ecdysteroid UDP-g 98.2 0.00039 8.4E-09 73.5 23.6 122 229-366 297-434 (507)
125 COG3980 spsG Spore coat polysa 98.2 9.3E-05 2E-09 69.2 15.8 88 229-327 159-248 (318)
126 PRK01021 lpxB lipid-A-disaccha 98.1 4.9E-05 1.1E-09 79.7 13.5 201 106-331 299-513 (608)
127 PF09314 DUF1972: Domain of un 98.0 6.1E-05 1.3E-09 67.6 11.0 157 6-197 2-169 (185)
128 COG1819 Glycosyl transferases, 97.9 0.00018 3.8E-09 73.9 12.7 121 231-366 240-370 (406)
129 PF08323 Glyco_transf_5: Starc 97.6 0.0001 2.2E-09 70.3 6.1 43 7-50 1-45 (245)
130 COG4641 Uncharacterized protei 97.6 0.0029 6.2E-08 62.2 15.3 102 291-392 247-361 (373)
131 PRK02797 4-alpha-L-fucosyltran 97.5 0.0096 2.1E-07 57.3 18.0 267 111-394 33-318 (322)
132 COG3660 Predicted nucleoside-d 97.5 0.033 7.1E-07 51.9 20.2 188 114-334 67-274 (329)
133 PRK14089 ipid-A-disaccharide s 97.3 0.0019 4.1E-08 64.5 10.8 91 230-332 169-261 (347)
134 COG1817 Uncharacterized protei 97.2 0.076 1.7E-06 50.9 20.0 221 106-367 73-317 (346)
135 COG4671 Predicted glycosyl tra 97.1 0.025 5.5E-07 55.0 16.0 131 229-366 220-367 (400)
136 PF07429 Glyco_transf_56: 4-al 96.9 0.049 1.1E-06 53.3 15.7 135 229-366 184-335 (360)
137 PF04101 Glyco_tran_28_C: Glyc 96.6 0.00012 2.5E-09 65.6 -4.2 103 260-367 31-147 (167)
138 PF06258 Mito_fiss_Elm1: Mitoc 96.5 0.077 1.7E-06 52.3 14.2 193 113-335 53-259 (311)
139 PRK10422 lipopolysaccharide co 96.2 1.6 3.5E-05 44.0 23.7 99 229-334 184-290 (352)
140 cd03789 GT1_LPS_heptosyltransf 96.1 0.62 1.3E-05 45.2 18.5 98 231-335 124-227 (279)
141 PF12038 DUF3524: Domain of un 96.0 0.086 1.9E-06 46.0 10.1 79 110-194 52-132 (168)
142 KOG3742 Glycogen synthase [Car 95.9 0.003 6.5E-08 62.7 0.9 99 294-392 493-612 (692)
143 PRK10017 colanic acid biosynth 95.8 2.5 5.3E-05 43.8 22.0 116 245-367 260-395 (426)
144 COG0859 RfaF ADP-heptose:LPS h 95.7 0.72 1.6E-05 46.2 17.4 100 229-335 176-280 (334)
145 PF00201 UDPGT: UDP-glucoronos 95.4 0.15 3.3E-06 54.1 12.1 125 229-365 277-410 (500)
146 PF00862 Sucrose_synth: Sucros 95.2 0.16 3.5E-06 52.1 10.3 37 115-154 399-436 (550)
147 PF04464 Glyphos_transf: CDP-G 94.5 0.19 4E-06 51.1 9.3 176 182-366 135-338 (369)
148 PF01075 Glyco_transf_9: Glyco 94.3 0.59 1.3E-05 44.4 11.7 98 229-333 106-210 (247)
149 PF05159 Capsule_synth: Capsul 94.3 0.73 1.6E-05 44.5 12.4 85 243-334 138-227 (269)
150 KOG4626 O-linked N-acetylgluco 94.1 1.3 2.8E-05 46.6 13.8 170 219-392 749-940 (966)
151 PLN02448 UDP-glycosyltransfera 93.9 1.3 2.8E-05 46.5 14.2 125 229-365 275-416 (459)
152 PF15024 Glyco_transf_18: Glyc 93.9 0.61 1.3E-05 48.8 11.4 150 229-392 277-455 (559)
153 PRK14986 glycogen phosphorylas 93.2 0.5 1.1E-05 52.0 9.7 131 226-356 540-702 (815)
154 PLN02670 transferase, transfer 92.8 2 4.4E-05 45.0 13.3 74 291-366 345-431 (472)
155 PLN02410 UDP-glucoronosyl/UDP- 92.4 3 6.4E-05 43.6 14.0 72 291-366 330-412 (451)
156 PF12000 Glyco_trans_4_3: Gkyc 92.1 0.5 1.1E-05 42.0 6.7 91 115-211 64-170 (171)
157 cd04300 GT1_Glycogen_Phosphory 92.0 0.7 1.5E-05 50.9 9.0 131 226-356 527-689 (797)
158 PF10087 DUF2325: Uncharacteri 91.9 1.2 2.6E-05 35.5 8.3 72 263-334 2-84 (97)
159 PF00343 Phosphorylase: Carboh 91.9 1.9 4E-05 47.0 11.8 131 226-356 441-603 (713)
160 PLN03004 UDP-glycosyltransfera 91.5 1.2 2.5E-05 46.5 9.7 72 291-364 340-424 (451)
161 COG0058 GlgP Glucan phosphoryl 91.3 1.3 2.9E-05 48.2 10.0 123 227-349 485-629 (750)
162 PLN02562 UDP-glycosyltransfera 90.1 2.8 6.1E-05 43.8 11.1 126 229-365 274-414 (448)
163 TIGR02193 heptsyl_trn_I lipopo 90.1 4.2 9E-05 40.3 12.0 126 229-362 180-319 (319)
164 PLN02173 UDP-glucosyl transfer 89.8 5.2 0.00011 41.7 12.7 74 291-366 323-410 (449)
165 PLN03007 UDP-glucosyltransfera 89.7 8.6 0.00019 40.6 14.5 72 292-365 352-441 (482)
166 PRK14985 maltodextrin phosphor 89.5 0.78 1.7E-05 50.3 6.5 130 226-356 526-688 (798)
167 PLN02210 UDP-glucosyl transfer 89.5 5.7 0.00012 41.6 12.9 130 229-366 270-417 (456)
168 PLN00164 glucosyltransferase; 89.2 8 0.00017 40.8 13.8 74 291-366 345-433 (480)
169 PLN02208 glycosyltransferase f 89.1 10 0.00022 39.6 14.3 131 229-366 252-403 (442)
170 TIGR02195 heptsyl_trn_II lipop 89.1 3.2 6.8E-05 41.4 10.4 99 229-334 175-279 (334)
171 PLN00414 glycosyltransferase f 88.9 4.9 0.00011 41.9 11.8 130 229-366 253-404 (446)
172 TIGR02093 P_ylase glycogen/sta 88.7 1.2 2.7E-05 48.9 7.3 131 226-357 524-687 (794)
173 PLN02764 glycosyltransferase f 88.4 11 0.00023 39.4 13.8 73 291-365 323-408 (453)
174 PLN02555 limonoid glucosyltran 87.7 11 0.00025 39.6 13.6 71 292-366 344-431 (480)
175 TIGR03609 S_layer_CsaB polysac 87.0 13 0.00029 36.2 13.2 142 182-333 128-277 (298)
176 PLN02167 UDP-glycosyltransfera 86.7 11 0.00023 39.9 12.9 71 291-365 346-435 (475)
177 PLN02554 UDP-glycosyltransfera 86.5 7.3 0.00016 41.1 11.6 69 291-363 348-439 (481)
178 PRK10964 ADP-heptose:LPS hepto 84.9 12 0.00027 37.0 11.8 94 233-334 183-281 (322)
179 PLN02863 UDP-glucoronosyl/UDP- 84.5 15 0.00033 38.7 12.7 68 292-363 350-432 (477)
180 PLN02152 indole-3-acetate beta 84.2 17 0.00037 38.0 12.8 74 291-366 333-419 (455)
181 PLN02207 UDP-glycosyltransfera 83.7 21 0.00046 37.4 13.2 71 291-363 338-425 (468)
182 PF11440 AGT: DNA alpha-glucos 81.6 51 0.0011 31.6 23.0 289 20-364 1-353 (355)
183 PF06925 MGDG_synth: Monogalac 80.9 2.1 4.6E-05 38.0 4.1 70 106-195 78-151 (169)
184 PRK10916 ADP-heptose:LPS hepto 80.7 6.9 0.00015 39.3 8.2 99 229-334 181-289 (348)
185 PF08288 PIGA: PIGA (GPI ancho 76.6 2.9 6.3E-05 32.4 3.0 46 107-154 40-87 (90)
186 KOG3349 Predicted glycosyltran 76.0 17 0.00036 31.4 7.6 93 231-332 6-107 (170)
187 COG1887 TagB Putative glycosyl 74.6 55 0.0012 33.5 12.6 138 223-367 202-356 (388)
188 PF01408 GFO_IDH_MocA: Oxidore 74.5 20 0.00044 29.2 8.1 72 256-333 21-94 (120)
189 PF11997 DUF3492: Domain of un 73.5 13 0.00028 35.9 7.4 76 117-194 172-258 (268)
190 TIGR02201 heptsyl_trn_III lipo 73.1 35 0.00076 34.1 10.9 99 229-334 182-288 (344)
191 PLN02992 coniferyl-alcohol glu 72.2 9.5 0.00021 40.1 6.6 73 291-365 344-428 (481)
192 COG1927 Mtd Coenzyme F420-depe 71.6 20 0.00042 32.6 7.3 96 232-347 7-113 (277)
193 PLN02534 UDP-glycosyltransfera 71.4 1E+02 0.0022 32.6 14.1 70 292-363 351-443 (491)
194 PRK05380 pyrG CTP synthetase; 70.4 1.4E+02 0.0031 31.7 14.5 93 243-335 271-382 (533)
195 PF03016 Exostosin: Exostosin 70.3 6.1 0.00013 38.6 4.5 55 294-348 229-287 (302)
196 cd01967 Nitrogenase_MoFe_alpha 70.0 1E+02 0.0023 31.5 13.8 110 240-363 134-257 (406)
197 COG2327 WcaK Polysaccharide py 69.0 1.3E+02 0.0028 30.6 13.3 101 261-366 241-352 (385)
198 COG2984 ABC-type uncharacteriz 68.1 65 0.0014 31.6 10.7 85 251-335 149-249 (322)
199 TIGR00288 conserved hypothetic 64.1 38 0.00082 29.8 7.5 67 242-309 89-156 (160)
200 PF01113 DapB_N: Dihydrodipico 63.1 12 0.00027 31.2 4.4 43 293-335 59-101 (124)
201 PF01975 SurE: Survival protei 62.3 10 0.00022 34.6 4.0 37 6-48 1-37 (196)
202 PF04230 PS_pyruv_trans: Polys 61.6 93 0.002 29.1 10.9 36 293-333 249-284 (286)
203 COG3414 SgaB Phosphotransferas 60.9 20 0.00043 28.4 4.8 81 263-363 5-92 (93)
204 cd01080 NAD_bind_m-THF_DH_Cycl 60.4 39 0.00085 30.0 7.2 87 246-336 30-118 (168)
205 PF13407 Peripla_BP_4: Peripla 60.1 76 0.0016 29.7 9.9 59 301-361 55-114 (257)
206 cd00027 BRCT Breast Cancer Sup 59.9 46 0.00099 23.4 6.6 62 261-332 2-65 (72)
207 COG1553 DsrE Uncharacterized c 59.3 16 0.00034 30.4 4.1 40 6-46 1-40 (126)
208 KOG1050 Trehalose-6-phosphate 58.8 1.1E+02 0.0024 34.1 11.6 140 228-367 275-443 (732)
209 PLN03015 UDP-glucosyl transfer 57.6 76 0.0017 33.3 9.9 70 292-363 342-425 (470)
210 PF02670 DXP_reductoisom: 1-de 56.5 54 0.0012 27.7 7.0 89 239-332 31-121 (129)
211 TIGR01012 Sa_S2_E_A ribosomal 56.1 54 0.0012 29.9 7.4 97 241-339 43-147 (196)
212 PF11997 DUF3492: Domain of un 55.4 14 0.0003 35.7 3.7 40 6-46 1-41 (268)
213 PF03033 Glyco_transf_28: Glyc 54.7 13 0.00028 31.3 3.2 23 23-46 11-34 (139)
214 PRK05447 1-deoxy-D-xylulose 5- 53.0 56 0.0012 33.2 7.7 89 239-334 34-124 (385)
215 cd01972 Nitrogenase_VnfE_like 52.5 2E+02 0.0042 29.8 12.0 111 241-363 137-264 (426)
216 COG4567 Response regulator con 52.4 1.1E+02 0.0024 26.6 8.1 129 258-386 7-151 (182)
217 PRK13302 putative L-aspartate 52.2 78 0.0017 30.5 8.4 71 258-333 29-99 (271)
218 PRK04020 rps2P 30S ribosomal p 52.0 79 0.0017 29.0 7.8 97 241-339 49-153 (204)
219 TIGR01361 DAHP_synth_Bsub phos 50.9 2.2E+02 0.0048 27.3 11.2 117 234-364 28-158 (260)
220 cd05565 PTS_IIB_lactose PTS_II 50.0 28 0.0006 27.9 4.1 71 263-333 4-80 (99)
221 PRK00207 sulfur transfer compl 49.6 21 0.00045 30.1 3.5 39 6-46 1-40 (128)
222 PF02826 2-Hacid_dh_C: D-isome 49.6 67 0.0014 28.7 7.1 74 261-334 37-129 (178)
223 TIGR01283 nifE nitrogenase mol 49.4 2.3E+02 0.005 29.6 12.1 111 240-364 167-295 (456)
224 PLN02327 CTP synthase 48.3 3.8E+02 0.0082 28.8 18.6 94 242-335 279-401 (557)
225 TIGR01761 thiaz-red thiazoliny 48.3 1.6E+02 0.0035 29.5 10.1 91 229-333 3-98 (343)
226 PRK13396 3-deoxy-7-phosphohept 48.0 3.1E+02 0.0066 27.6 12.6 117 231-365 102-235 (352)
227 TIGR01088 aroQ 3-dehydroquinat 47.3 53 0.0011 28.1 5.5 90 273-362 31-138 (141)
228 KOG0832 Mitochondrial/chloropl 47.1 2.3E+02 0.0051 26.4 9.9 36 303-339 175-212 (251)
229 TIGR00853 pts-lac PTS system, 46.4 23 0.0005 28.1 3.1 70 263-333 7-83 (95)
230 PTZ00254 40S ribosomal protein 46.2 1.1E+02 0.0023 29.1 7.9 99 240-339 51-157 (249)
231 cd01750 GATase1_CobQ Type 1 gl 45.9 65 0.0014 29.2 6.5 68 263-334 3-81 (194)
232 PRK06849 hypothetical protein; 45.7 1.2E+02 0.0025 31.0 9.0 36 1-46 1-36 (389)
233 PRK00994 F420-dependent methyl 45.7 1.1E+02 0.0023 28.7 7.5 97 231-347 6-113 (277)
234 PRK13015 3-dehydroquinate dehy 45.3 1.8E+02 0.0039 25.1 8.4 91 273-363 33-141 (146)
235 PLN03007 UDP-glucosyltransfera 45.0 26 0.00055 37.1 4.1 40 1-46 1-41 (482)
236 COG0673 MviM Predicted dehydro 44.8 1.3E+02 0.0029 29.6 9.2 67 262-333 31-99 (342)
237 PF10686 DUF2493: Protein of u 44.7 1.3E+02 0.0028 22.4 8.1 60 229-290 3-64 (71)
238 smart00115 CASc Caspase, inter 44.3 35 0.00076 32.3 4.6 45 1-46 3-51 (241)
239 PRK13398 3-deoxy-7-phosphohept 44.3 3E+02 0.0065 26.5 13.9 116 232-363 28-159 (266)
240 PLN02928 oxidoreductase family 43.8 95 0.0021 31.2 7.8 43 291-333 216-263 (347)
241 PRK08410 2-hydroxyacid dehydro 43.6 1.3E+02 0.0029 29.6 8.7 56 293-360 188-248 (311)
242 KOG1192 UDP-glucuronosyl and U 43.4 3.2E+02 0.007 28.6 12.3 50 317-366 366-424 (496)
243 cd05564 PTS_IIB_chitobiose_lic 42.1 36 0.00078 27.0 3.6 70 263-333 3-79 (96)
244 COG1692 Calcineurin-like phosp 42.0 1.6E+02 0.0035 27.8 8.1 100 231-334 2-116 (266)
245 PF10649 DUF2478: Protein of u 41.6 33 0.00072 30.1 3.6 34 301-334 93-132 (159)
246 PRK05395 3-dehydroquinate dehy 40.7 65 0.0014 27.7 5.1 90 273-362 33-140 (146)
247 KOG1021 Acetylglucosaminyltran 40.6 1.6E+02 0.0034 31.0 9.1 71 292-363 334-408 (464)
248 PF02951 GSH-S_N: Prokaryotic 39.6 52 0.0011 27.3 4.3 39 6-46 1-39 (119)
249 PF00072 Response_reg: Respons 39.4 1.8E+02 0.004 22.7 8.3 87 273-359 12-112 (112)
250 PLN02173 UDP-glucosyl transfer 39.4 39 0.00085 35.3 4.4 41 1-47 1-42 (449)
251 PRK08572 rps17p 30S ribosomal 39.1 33 0.00072 27.8 2.9 43 456-498 2-48 (108)
252 COG1830 FbaB DhnA-type fructos 38.9 1.9E+02 0.0042 27.6 8.4 44 323-366 200-261 (265)
253 PF01531 Glyco_transf_11: Glyc 38.0 1.7E+02 0.0036 28.6 8.4 64 243-308 189-254 (298)
254 PF00533 BRCT: BRCA1 C Terminu 37.6 72 0.0016 23.3 4.6 65 259-332 7-72 (78)
255 COG2910 Putative NADH-flavin r 37.2 40 0.00087 30.3 3.4 32 6-46 1-32 (211)
256 PRK06932 glycerate dehydrogena 37.2 1.5E+02 0.0033 29.3 8.0 43 292-334 188-235 (314)
257 cd01425 RPS2 Ribosomal protein 36.6 3.3E+02 0.0071 24.7 9.9 30 301-331 127-156 (193)
258 PF13905 Thioredoxin_8: Thiore 36.0 1.7E+02 0.0038 22.3 6.8 66 244-309 16-85 (95)
259 cd00032 CASc Caspase, interleu 35.8 52 0.0011 31.1 4.3 45 1-46 4-53 (243)
260 COG2247 LytB Putative cell wal 35.6 2.6E+02 0.0056 27.6 8.8 76 256-333 73-163 (337)
261 PF13241 NAD_binding_7: Putati 35.5 60 0.0013 26.0 4.0 39 297-335 56-95 (103)
262 PRK10017 colanic acid biosynth 35.5 3.4E+02 0.0073 28.2 10.5 103 232-334 3-157 (426)
263 PRK13397 3-deoxy-7-phosphohept 35.5 4E+02 0.0086 25.4 12.7 113 237-365 21-149 (250)
264 PLN02208 glycosyltransferase f 34.9 49 0.0011 34.5 4.3 39 1-46 1-40 (442)
265 PF09949 DUF2183: Uncharacteri 34.9 1.2E+02 0.0026 24.3 5.6 39 248-286 52-92 (100)
266 PRK00048 dihydrodipicolinate r 34.9 1.3E+02 0.0029 28.6 7.0 43 292-334 51-93 (257)
267 KOG0780 Signal recognition par 34.9 3.7E+02 0.008 27.5 9.9 156 234-392 159-342 (483)
268 PF02441 Flavoprotein: Flavopr 34.5 75 0.0016 26.6 4.7 35 6-46 1-35 (129)
269 PLN00414 glycosyltransferase f 34.5 51 0.0011 34.4 4.3 39 1-46 1-40 (446)
270 TIGR00337 PyrG CTP synthase. C 34.3 6E+02 0.013 27.1 18.6 76 260-335 289-382 (525)
271 PRK08673 3-deoxy-7-phosphohept 34.2 4.9E+02 0.011 26.0 12.3 114 235-364 97-226 (335)
272 PRK08887 nicotinic acid mononu 34.0 2.3E+02 0.0049 25.2 7.9 68 246-327 84-151 (174)
273 PLN02696 1-deoxy-D-xylulose-5- 34.0 1.4E+02 0.003 31.1 7.2 89 240-333 91-181 (454)
274 cd01976 Nitrogenase_MoFe_alpha 34.0 5.5E+02 0.012 26.5 14.0 89 261-363 173-269 (421)
275 cd01965 Nitrogenase_MoFe_beta_ 33.5 2.7E+02 0.0059 28.8 9.6 112 241-364 132-273 (428)
276 PRK15438 erythronate-4-phospha 33.3 1.8E+02 0.0039 29.6 7.9 77 259-335 115-210 (378)
277 PF11238 DUF3039: Protein of u 33.3 34 0.00073 24.2 1.8 16 316-331 15-30 (58)
278 cd06289 PBP1_MalI_like Ligand- 33.3 4E+02 0.0086 24.7 11.2 61 301-365 55-116 (268)
279 COG1519 KdtA 3-deoxy-D-manno-o 33.1 2.8E+02 0.006 28.5 9.0 86 245-333 63-154 (419)
280 TIGR01282 nifD nitrogenase mol 33.0 6E+02 0.013 26.7 13.3 109 241-363 180-304 (466)
281 cd00466 DHQase_II Dehydroquina 32.8 85 0.0019 26.8 4.5 90 273-362 31-138 (140)
282 TIGR01658 EYA-cons_domain eyes 32.8 1E+02 0.0023 29.1 5.4 51 248-301 216-268 (274)
283 COG0111 SerA Phosphoglycerate 32.8 1.9E+02 0.004 28.8 7.8 88 261-360 143-249 (324)
284 PRK06249 2-dehydropantoate 2-r 31.8 62 0.0013 31.9 4.3 36 1-46 1-36 (313)
285 PLN00016 RNA-binding protein; 31.7 66 0.0014 32.6 4.6 36 6-46 53-88 (378)
286 PF04430 DUF498: Protein of un 31.6 83 0.0018 25.6 4.3 42 248-289 41-86 (110)
287 cd00316 Oxidoreductase_nitroge 31.6 2.1E+02 0.0045 29.1 8.3 109 240-363 126-250 (399)
288 PF06418 CTP_synth_N: CTP synt 31.6 3.7E+02 0.0081 25.8 9.0 78 112-191 128-214 (276)
289 COG4370 Uncharacterized protei 31.5 1.1E+02 0.0025 29.8 5.6 143 239-388 238-405 (412)
290 PRK08305 spoVFB dipicolinate s 31.5 60 0.0013 29.6 3.7 40 1-46 1-41 (196)
291 cd05212 NAD_bind_m-THF_DH_Cycl 31.3 3.4E+02 0.0073 23.2 8.7 70 258-329 26-97 (140)
292 TIGR03630 arch_S17P archaeal r 30.9 67 0.0015 25.8 3.4 40 458-497 2-45 (102)
293 TIGR00243 Dxr 1-deoxy-D-xylulo 30.9 1.3E+02 0.0029 30.5 6.3 90 239-333 34-125 (389)
294 PF01220 DHquinase_II: Dehydro 30.6 1.1E+02 0.0023 26.3 4.8 90 273-362 32-139 (140)
295 cd01539 PBP1_GGBP Periplasmic 30.4 2.9E+02 0.0062 26.7 8.8 34 301-334 57-91 (303)
296 PRK01372 ddl D-alanine--D-alan 30.4 73 0.0016 31.1 4.6 41 5-46 4-44 (304)
297 COG0373 HemA Glutamyl-tRNA red 30.1 3.5E+02 0.0075 27.9 9.2 76 261-341 203-281 (414)
298 PRK13304 L-aspartate dehydroge 29.6 3E+02 0.0065 26.3 8.5 69 260-334 26-94 (265)
299 cd06267 PBP1_LacI_sugar_bindin 29.5 4.4E+02 0.0096 24.1 10.9 60 301-364 55-114 (264)
300 PF08660 Alg14: Oligosaccharid 29.0 1E+02 0.0022 27.4 4.7 74 109-195 84-160 (170)
301 cd06167 LabA_like LabA_like pr 28.7 2.8E+02 0.006 23.5 7.5 66 239-305 78-146 (149)
302 COG2120 Uncharacterized protei 28.4 4E+02 0.0086 25.0 9.0 40 5-49 10-49 (237)
303 cd06312 PBP1_ABC_sugar_binding 28.3 4.3E+02 0.0094 24.7 9.5 64 301-364 57-121 (271)
304 PRK06718 precorrin-2 dehydroge 28.2 4E+02 0.0087 24.3 8.7 107 251-363 26-141 (202)
305 PRK15409 bifunctional glyoxyla 28.2 2.7E+02 0.0059 27.6 8.1 42 293-334 192-238 (323)
306 COG2894 MinD Septum formation 27.9 5.1E+02 0.011 24.3 9.2 119 7-142 3-135 (272)
307 PLN02562 UDP-glycosyltransfera 27.7 84 0.0018 32.8 4.6 41 1-46 1-42 (448)
308 cd05125 Mth938_2P1-like Mth938 27.6 1.7E+02 0.0038 24.0 5.5 43 248-290 42-88 (114)
309 cd03129 GAT1_Peptidase_E_like 27.6 4.5E+02 0.0098 23.9 9.1 77 259-335 28-124 (210)
310 cd05312 NAD_bind_1_malic_enz N 27.5 3.9E+02 0.0085 25.9 8.7 41 291-331 93-138 (279)
311 cd01544 PBP1_GalR Ligand-bindi 27.1 5.2E+02 0.011 24.1 10.0 64 298-366 49-112 (270)
312 PF02882 THF_DHG_CYH_C: Tetrah 27.0 3.9E+02 0.0085 23.4 8.0 53 258-310 34-88 (160)
313 KOG2884 26S proteasome regulat 26.7 3.6E+02 0.0078 25.0 7.6 114 229-362 108-227 (259)
314 PRK10840 transcriptional regul 26.7 4.8E+02 0.01 23.5 9.5 103 261-364 4-126 (216)
315 cd01538 PBP1_ABC_xylose_bindin 26.6 4.9E+02 0.011 24.7 9.7 35 301-335 55-90 (288)
316 cd05311 NAD_bind_2_malic_enz N 26.6 3.2E+02 0.007 25.4 7.9 36 294-330 90-125 (226)
317 COG1879 RbsB ABC-type sugar tr 26.3 3.9E+02 0.0084 26.1 9.0 64 300-365 90-158 (322)
318 cd00762 NAD_bind_malic_enz NAD 26.3 3.1E+02 0.0068 26.1 7.7 40 292-331 95-139 (254)
319 COG0757 AroQ 3-dehydroquinate 26.2 2.1E+02 0.0046 24.4 5.7 90 273-362 32-139 (146)
320 cd06284 PBP1_LacI_like_6 Ligan 26.0 5.3E+02 0.011 23.8 10.4 60 301-365 55-114 (267)
321 COG0504 PyrG CTP synthase (UTP 26.0 8E+02 0.017 25.9 12.0 37 7-45 2-38 (533)
322 cd06305 PBP1_methylthioribose_ 25.9 5.4E+02 0.012 23.9 9.9 60 301-363 55-115 (273)
323 TIGR03609 S_layer_CsaB polysac 25.5 4.9E+02 0.011 25.1 9.4 88 240-334 10-108 (298)
324 PF06506 PrpR_N: Propionate ca 25.5 2.4E+02 0.0051 25.0 6.6 9 182-190 35-43 (176)
325 PF13380 CoA_binding_2: CoA bi 25.4 1.2E+02 0.0026 24.9 4.2 35 6-46 1-35 (116)
326 TIGR00075 hypD hydrogenase exp 25.4 6.6E+02 0.014 25.4 9.9 92 256-363 132-240 (369)
327 PRK06719 precorrin-2 dehydroge 25.3 86 0.0019 27.4 3.6 33 4-46 12-44 (157)
328 COG3737 Uncharacterized conser 25.3 1.6E+02 0.0035 24.3 4.7 47 242-288 51-101 (127)
329 PRK04531 acetylglutamate kinas 25.2 3.7E+02 0.0079 27.6 8.6 120 229-364 37-163 (398)
330 cd06301 PBP1_rhizopine_binding 25.2 5.6E+02 0.012 23.8 10.3 62 301-364 56-119 (272)
331 COG1052 LdhA Lactate dehydroge 25.1 3.8E+02 0.0083 26.6 8.4 54 295-360 194-252 (324)
332 PLN02764 glycosyltransferase f 25.0 1E+02 0.0022 32.3 4.6 41 1-47 1-42 (453)
333 cd03813 GT1_like_3 This family 24.8 76 0.0016 33.4 3.7 39 7-46 1-40 (475)
334 PF00852 Glyco_transf_10: Glyc 24.7 3.7E+02 0.008 27.0 8.4 72 294-367 220-301 (349)
335 PF12738 PTCB-BRCT: twin BRCT 24.3 2.6E+02 0.0056 19.6 6.0 59 263-332 3-62 (63)
336 PRK00257 erythronate-4-phospha 24.0 3.4E+02 0.0073 27.7 8.0 76 260-335 116-210 (381)
337 COG0062 Uncharacterized conser 24.0 2E+02 0.0042 26.5 5.7 100 229-335 50-161 (203)
338 PRK04155 chaperone protein Hch 23.9 1.4E+02 0.0031 29.1 5.1 40 6-46 50-98 (287)
339 cd06309 PBP1_YtfQ_like Peripla 23.8 5.9E+02 0.013 23.8 9.5 64 301-364 55-120 (273)
340 PF03358 FMN_red: NADPH-depend 23.7 1.1E+02 0.0024 26.1 4.0 38 6-46 1-39 (152)
341 PF01936 NYN: NYN domain; Int 23.7 2.1E+02 0.0045 24.0 5.7 66 240-306 75-143 (146)
342 PRK13288 pyrophosphatase PpaX; 23.6 5.5E+02 0.012 23.2 9.5 113 240-360 83-212 (214)
343 cd06313 PBP1_ABC_sugar_binding 23.5 5.2E+02 0.011 24.3 9.1 62 301-363 55-118 (272)
344 TIGR00036 dapB dihydrodipicoli 23.3 2.3E+02 0.005 27.2 6.4 42 293-334 60-101 (266)
345 COG0052 RpsB Ribosomal protein 23.3 5.2E+02 0.011 24.5 8.3 25 315-339 169-195 (252)
346 COG1618 Predicted nucleotide k 23.3 2E+02 0.0043 25.5 5.2 69 297-365 96-178 (179)
347 PF01488 Shikimate_DH: Shikima 23.3 1.2E+02 0.0026 25.6 4.0 88 262-354 38-132 (135)
348 PF01993 MTD: methylene-5,6,7, 23.1 32 0.00069 32.1 0.4 96 232-347 6-112 (276)
349 TIGR01768 GGGP-family geranylg 22.9 1.2E+02 0.0026 28.3 4.1 71 236-310 4-80 (223)
350 PLN02410 UDP-glucoronosyl/UDP- 22.5 1.1E+02 0.0025 31.9 4.4 41 1-47 1-44 (451)
351 cd03147 GATase1_Ydr533c_like T 22.4 1.4E+02 0.003 28.0 4.6 39 7-46 1-46 (231)
352 PF03447 NAD_binding_3: Homose 22.3 1E+02 0.0022 25.1 3.2 42 293-334 49-92 (117)
353 PRK08306 dipicolinate synthase 22.2 2.2E+02 0.0048 27.8 6.1 22 23-45 11-32 (296)
354 TIGR01454 AHBA_synth_RP 3-amin 21.9 5.8E+02 0.013 22.8 9.3 115 238-358 74-203 (205)
355 PRK13181 hisH imidazole glycer 21.8 4.5E+02 0.0098 23.7 7.8 61 271-335 11-82 (199)
356 TIGR03855 NAD_NadX aspartate d 21.7 3E+02 0.0064 25.8 6.6 67 261-333 2-69 (229)
357 PRK05282 (alpha)-aspartyl dipe 21.6 6.8E+02 0.015 23.5 9.2 89 245-335 18-123 (233)
358 COG1029 FwdB Formylmethanofura 21.6 7.8E+02 0.017 24.8 9.4 103 229-333 246-367 (429)
359 PRK06091 membrane protein FdrA 21.4 6.1E+02 0.013 27.2 9.4 55 312-366 265-320 (555)
360 PRK12595 bifunctional 3-deoxy- 21.4 8.5E+02 0.019 24.6 12.8 107 242-364 129-251 (360)
361 PRK06487 glycerate dehydrogena 21.2 2.5E+02 0.0055 27.7 6.4 73 261-333 149-234 (317)
362 TIGR02536 eut_hyp ethanolamine 21.2 2.3E+02 0.0051 26.1 5.6 68 259-334 19-99 (207)
363 PF01012 ETF: Electron transfe 21.0 3E+02 0.0065 23.9 6.3 88 244-331 17-120 (164)
364 KOG2842 Interferon-related pro 21.0 1E+02 0.0022 31.0 3.4 142 312-456 235-393 (427)
365 PRK05583 ribosomal protein L7A 20.9 4.5E+02 0.0097 21.1 6.9 74 243-321 21-97 (104)
366 COG2085 Predicted dinucleotide 20.9 4.7E+02 0.01 24.1 7.4 98 261-364 25-124 (211)
367 COG0281 SfcA Malic enzyme [Ene 20.9 4.2E+02 0.0091 27.3 7.7 85 246-331 185-298 (432)
368 cd03146 GAT1_Peptidase_E Type 20.7 6.6E+02 0.014 23.0 10.4 91 243-335 16-124 (212)
369 PRK05647 purN phosphoribosylgl 20.7 1.5E+02 0.0033 27.1 4.3 42 108-153 71-112 (200)
370 cd01971 Nitrogenase_VnfN_like 20.6 6.5E+02 0.014 26.0 9.6 112 240-364 131-260 (427)
371 PF02233 PNTB: NAD(P) transhyd 20.6 2.3E+02 0.005 29.6 6.0 131 230-360 309-461 (463)
372 cd01749 GATase1_PB Glutamine A 20.6 3.3E+02 0.0072 24.3 6.6 66 265-335 4-79 (183)
373 PF04413 Glycos_transf_N: 3-De 20.5 3.7E+02 0.008 24.2 6.8 87 244-333 34-126 (186)
374 TIGR02634 xylF D-xylose ABC tr 20.5 6.8E+02 0.015 24.1 9.3 34 301-334 54-88 (302)
375 PRK14569 D-alanyl-alanine synt 20.5 1.2E+02 0.0026 29.6 3.9 40 5-45 3-42 (296)
376 PRK13940 glutamyl-tRNA reducta 20.4 6.2E+02 0.013 26.1 9.2 70 261-336 206-275 (414)
377 cd05014 SIS_Kpsf KpsF-like pro 20.4 2.3E+02 0.005 23.2 5.2 72 262-333 2-82 (128)
378 COG3563 KpsC Capsule polysacch 20.3 3.3E+02 0.0072 28.5 6.8 77 250-334 171-253 (671)
379 PRK06436 glycerate dehydrogena 20.0 3.3E+02 0.0073 26.7 6.9 41 293-333 165-210 (303)
No 1
>PLN02501 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=9.7e-81 Score=636.18 Aligned_cols=463 Identities=54% Similarity=0.975 Sum_probs=421.1
Q ss_pred cEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCC
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTS 85 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (518)
++|+|||++.+|||||++++++.+|.||++.|+++||++.||++..+|+.+||++++|.+|++|+.|++.|++.++++.+
T Consensus 323 r~~~ivTtAslPWmTGtavnpL~rAayLa~~~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r~g~~~ 402 (794)
T PLN02501 323 RHVAIVTTASLPWMTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEERIGFKA 402 (794)
T ss_pred CeEEEEEcccCcccccccccHHHHHHHhcccCCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHhcCCCC
Confidence 89999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcCCEEEEEeCChhhhhhhhcchHH
Q 010098 86 TFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRL 165 (518)
Q Consensus 86 ~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~ 165 (518)
.+.+.|||++|....++|+|+.++.+.+.+++|||||+++|++++|++||.+|+++++|+|.++||+|+.|..+++.+.+
T Consensus 403 ~~~i~fYpg~~~~~~~SI~p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~PVVasyHTny~eYl~~y~~g~L 482 (794)
T PLN02501 403 DFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGAL 482 (794)
T ss_pred CceEEeecchhccCCccccchHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcCCeEEEEeCCcHHHHhHhcchhH
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHhhhhccEEEEeChhhhccCCCceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEeecccCCHH
Q 010098 166 QAFLLEFVNSWLARVHCHKVIRLSAATQEYPNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYE 245 (518)
Q Consensus 166 ~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~ 245 (518)
...+.+.+++++.++|||.|+++|..+++++.+.+.+++|||+.+|.+..........+...+.+.++|+||+.+.||++
T Consensus 483 ~~~llk~l~~~v~r~hcD~VIaPS~atq~L~~~vI~nVnGVDte~F~P~~r~~~~r~lgi~~~~kgiLfVGRLa~EKGld 562 (794)
T PLN02501 483 QAFFVKHINNWVTRAYCHKVLRLSAATQDLPKSVICNVHGVNPKFLKIGEKVAEERELGQQAFSKGAYFLGKMVWAKGYR 562 (794)
T ss_pred HHHHHHHHHHHHHHhhCCEEEcCCHHHHHhcccceeecccccccccCCcchhHHHHhcCCccccCceEEEEcccccCCHH
Confidence 88888888999998889999999999998887777778999999999876654444555554456789999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcC
Q 010098 246 ELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMG 325 (518)
Q Consensus 246 ~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G 325 (518)
.|++|+..+..+.++++|+|+|+|++.++++++++++++.+.|.|+.++..++|+.+|+||+||.+|+||++++||||||
T Consensus 563 ~LLeAla~L~~~~pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~dd~~~lyasaDVFVlPS~sEgFGlVlLEAMA~G 642 (794)
T PLN02501 563 ELIDLLAKHKNELDGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMG 642 (794)
T ss_pred HHHHHHHHHHhhCCCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCCCCHHHHHHhCCEEEECCCcccchHHHHHHHHcC
Confidence 99999999988888999999999999999999999999988888888888899999999999999999999999999999
Q ss_pred CeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHhCCCCCCChHHHhcCCHHHHHHHHHHHHHhcCCcccc---CCC
Q 010098 326 KIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEEPAQPTDAQTHQLSWESATERFLQVAELVGDVVTK---RSK 402 (518)
Q Consensus 326 ~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~~~~l~~~~~~~~sw~~~~~~~~~~y~~~~~~~~~---~~~ 402 (518)
+|||+++.++.+++.++.+|++++|+++++++|.+++++++.+....++..+||+++++++++.-+..+..+.. ..+
T Consensus 643 lPVVATd~pG~e~V~~g~nGll~~D~EafAeAI~~LLsd~~~rl~~~a~~~~SWeAaadrLle~~~~~~~~~~~~~~~~~ 722 (794)
T PLN02501 643 KFVVCADHPSNEFFRSFPNCLTYKTSEDFVAKVKEALANEPQPLTPEQRYNLSWEAATQRFMEYSDLDKVLNNGDDAKLS 722 (794)
T ss_pred CCEEEecCCCCceEeecCCeEecCCHHHHHHHHHHHHhCchhhhHHHHHhhCCHHHHHHHHHHhhccccccccccccccc
Confidence 99999999997778889999999999999999999999887655445567999999999999999977644431 111
Q ss_pred ---CCCCCCcccCcchHHHHHHHHHHhhhhhccccchhhhhcCCCCCCCCchHHHHHhCCCCccccCcc
Q 010098 403 ---SPSRHLESESLNSKRIIEDAFGYLHYVASGFETSRRALGAIPGSLQPDEQLCKELGLVTELGKGHC 468 (518)
Q Consensus 403 ---~~~~~~~~~~~~l~~~~d~~l~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (518)
..........++|.+.+|+++++.|++++|+|.+|+++||+||++++|+|+|+++||.+|++++..
T Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~g~~~~r~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (794)
T PLN02501 723 KSGGKSITKSVSMPNLSEMVDGGLAFAHYCLTGNEFLRLCTGAIPGTRDYDKQHCKDLHLLPPHVENPI 791 (794)
T ss_pred cccccchhhhccCCcHHHHhhhHHHHHHHHhhccHHHHHHhcCCCCCCCcCHHHHHhcCCCCCCCCCCC
Confidence 122223344488999999999999999999999999999999999999999999999999987653
No 2
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=4.1e-75 Score=590.52 Aligned_cols=462 Identities=76% Similarity=1.220 Sum_probs=409.9
Q ss_pred CCccccEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcc
Q 010098 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDR 80 (518)
Q Consensus 1 M~~~~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 80 (518)
|+++ |||+|||++|+||++|+++++..++.+|+++|.|+|+|++||+...++..+||++++|..+..++.+++.|...+
T Consensus 1 ~~~~-mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~ 79 (462)
T PLN02846 1 MQKK-QHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEER 79 (462)
T ss_pred CCCC-CEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCe
Confidence 5566 999999999999999999999999999999974699999999987778888999999999999999999998777
Q ss_pred cCCCCCCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcCCEEEEEeCChhhhhhhh
Q 010098 81 TGFTSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKRE 160 (518)
Q Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~ 160 (518)
+...+.+++++||.++....+.+.+..++.+.+++++|||||+++|+.++|+.+|..+.+++.++|.++||++..|..++
T Consensus 80 v~r~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k~~~vV~tyHT~y~~Y~~~~ 159 (462)
T PLN02846 80 ISFLPKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKTKFRLVIGIVHTNYLEYVKRE 159 (462)
T ss_pred EEEecccccccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHhcCCcEEEEECCChHHHHHHh
Confidence 77889999999999877767777788999999999999999999999999987788898888888899999999998877
Q ss_pred cchHHHHHHHHHHHHHHhhhhccEEEEeChhhhccCCCceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEeecc
Q 010098 161 KNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVW 240 (518)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~ 240 (518)
+.+.....+.+.+.+++.+.+||.+++.|+..+++.+..+++++|||+.+|.+..........+...+.+.++|+||+.+
T Consensus 160 ~~g~~~~~l~~~~~~~~~r~~~d~vi~pS~~~~~l~~~~i~~v~GVd~~~f~~~~~~~~~~~~~~~~~~~~~l~vGRL~~ 239 (462)
T PLN02846 160 KNGRVKAFLLKYINSWVVDIYCHKVIRLSAATQDYPRSIICNVHGVNPKFLEIGKLKLEQQKNGEQAFTKGAYYIGKMVW 239 (462)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCEEEccCHHHHHHhhCEEecCceechhhcCCCcccHhhhcCCCCCcceEEEEEecCcc
Confidence 76666777788888888888899999999988888777777789999999987654422111222222457999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHH
Q 010098 241 SKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAE 320 (518)
Q Consensus 241 ~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lE 320 (518)
.||++.|++++.++.+..|+++|+|+|+|+++++++++++++++.++++.+..+.+++|+.+|+||+||.+|+||++++|
T Consensus 240 eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~~~~~~~~~~~DvFv~pS~~Et~g~v~lE 319 (462)
T PLN02846 240 SKGYKELLKLLHKHQKELSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGRDHADPLFHDYKVFLNPSTTDVVCTTTAE 319 (462)
T ss_pred cCCHHHHHHHHHHHHhhCCCeEEEEECCCccHHHHHHHHHhcCCcEEEECCCCCHHHHHHhCCEEEECCCcccchHHHHH
Confidence 99999999999999888889999999999999999999999998887888888888999999999999999999999999
Q ss_pred HHHcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHhCCCCCCChHHHhcCCHHHHHHHHHHHHHhcCCccccC
Q 010098 321 ALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEEPAQPTDAQTHQLSWESATERFLQVAELVGDVVTKR 400 (518)
Q Consensus 321 Ama~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~~~~l~~~~~~~~sw~~~~~~~~~~y~~~~~~~~~~ 400 (518)
|||||+|||+++.++.+++.++.||+.++|.+++++++.++++++..+++.++++.|||+++++++++.|+..+..+..+
T Consensus 320 AmA~G~PVVa~~~~~~~~v~~~~ng~~~~~~~~~a~ai~~~l~~~~~~~~~~a~~~~SWe~~~~~l~~~~~~~~~~~~~~ 399 (462)
T PLN02846 320 ALAMGKIVVCANHPSNEFFKQFPNCRTYDDGKGFVRATLKALAEEPAPLTDAQRHELSWEAATERFLRVADLDLPSSAKP 399 (462)
T ss_pred HHHcCCcEEEecCCCcceeecCCceEecCCHHHHHHHHHHHHccCchhHHHHHHHhCCHHHHHHHHHHHhccCCcCcccc
Confidence 99999999999999999999999999999999999999999997666666777799999999999999999988765554
Q ss_pred CCCCCCCCcccCcchHHHHHHHHHHhhhhhccccchhhhhcCCCCCCCCchHHHHHhCCCCcc
Q 010098 401 SKSPSRHLESESLNSKRIIEDAFGYLHYVASGFETSRRALGAIPGSLQPDEQLCKELGLVTEL 463 (518)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~~d~~l~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~ 463 (518)
.+.......+.+++|.+.+|++++++|++++|.|..|+++||+||++++++|+|+|+||.+|.
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (462)
T PLN02846 400 NKSSLKNFMSTSPNLKKNMEDASAYLHNVASGFETSRRAFGAIPGSLQPDEQQCKELGLALQT 462 (462)
T ss_pred ccccccchhccCccHhhhhhhHHHHHHHHhhhhHHHHHHccCCCCCCCCCHHHHHhcCCCCCC
Confidence 444445566666889999999999999999999999999999999999999999999999873
No 3
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=1.6e-37 Score=325.29 Aligned_cols=356 Identities=18% Similarity=0.174 Sum_probs=252.1
Q ss_pred ccccEEEEEeec-cCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhccc
Q 010098 3 RKQQHIAIFTTA-SLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRT 81 (518)
Q Consensus 3 ~~~~rI~ivt~~-~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 81 (518)
+++|||++++.. ++|..+|++.+...++++|.+.| |+|+++++... . +.. +.. . .+
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G-~eV~vlt~~~~--~-----~~~--~~g--~-----------~v 112 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMG-DEVLVVTTDEG--V-----PQE--FHG--A-----------KV 112 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCC-CeEEEEecCCC--C-----Ccc--ccC--c-----------ee
Confidence 356999999864 35577898999999999999998 99999988221 0 100 000 0 00
Q ss_pred CCCCCCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhh
Q 010098 82 GFTSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKRE 160 (518)
Q Consensus 82 ~~~~~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~ 160 (518)
.....+.++.+.. . .........+.+.+++.+||+||+|++....+. +..+++..+ |+|.++|+..+.+....
T Consensus 113 ~~~~~~~~~~~~~-~---~~~~~~~~~l~~~i~~~kpDiIh~~~~~~~~~~--~~~~ak~~~ip~V~~~h~~~~~~~~~~ 186 (465)
T PLN02871 113 IGSWSFPCPFYQK-V---PLSLALSPRIISEVARFKPDLIHASSPGIMVFG--ALFYAKLLCVPLVMSYHTHVPVYIPRY 186 (465)
T ss_pred eccCCcCCccCCC-c---eeeccCCHHHHHHHHhCCCCEEEECCCchhHHH--HHHHHHHhCCCEEEEEecCchhhhhcc
Confidence 0000011111111 0 000001124677788899999999987654332 333445545 89999998766554332
Q ss_pred cchHHHHHHHHHHHHHHhhhhccEEEEeChhhhccC--------CCceecccccCCCCcCcchhh-HHHhhc-CCCCccc
Q 010098 161 KNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYP--------NSIVCNVHGVNPKFLEIGEKK-MEQQQN-GNKAFTK 230 (518)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~--------~~~~~~~~GVd~~~~~~~~~~-~~~~~~-~~~~~~~ 230 (518)
....+...+. .+.+++.+. +|.++++|+..++.. .+..+..+|+|.+.|.+.... ..+... ...++.+
T Consensus 187 ~~~~~~~~~~-~~~r~~~~~-ad~ii~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~ 264 (465)
T PLN02871 187 TFSWLVKPMW-DIIRFLHRA-ADLTLVTSPALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRSEEMRARLSGGEPEKP 264 (465)
T ss_pred cchhhHHHHH-HHHHHHHhh-CCEEEECCHHHHHHHHHcCCCCcCeEEEeCCccCccccCCccccHHHHHHhcCCCCCCe
Confidence 2222222222 223444443 899999997776631 223344579999877654322 122222 2233568
Q ss_pred EEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCC--CChHHHHhhcCeeEec
Q 010098 231 GAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGR--DHADPIFHDYKVFLNP 308 (518)
Q Consensus 231 ~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~--~~~~~l~~~adv~v~p 308 (518)
+|+|+|++.+.||++.+++++++ .++++|+|+|+|+..++++++++. .++.|.|.. +++.++|+.+|+||+|
T Consensus 265 ~i~~vGrl~~~K~~~~li~a~~~----~~~~~l~ivG~G~~~~~l~~~~~~--~~V~f~G~v~~~ev~~~~~~aDv~V~p 338 (465)
T PLN02871 265 LIVYVGRLGAEKNLDFLKRVMER----LPGARLAFVGDGPYREELEKMFAG--TPTVFTGMLQGDELSQAYASGDVFVMP 338 (465)
T ss_pred EEEEeCCCchhhhHHHHHHHHHh----CCCcEEEEEeCChHHHHHHHHhcc--CCeEEeccCCHHHHHHHHHHCCEEEEC
Confidence 89999999999999999999865 468999999999988889888774 357787765 5677999999999999
Q ss_pred CCCCCCchHHHHHHHcCCeEEeeCCCC-cccccc---CCcEEeeC--CHHHHHHHHHHHHhCCCC--CCChHHH---hcC
Q 010098 309 STTDVVCTATAEALAMGKIVVCANHPS-NDFFKQ---FPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT---HQL 377 (518)
Q Consensus 309 S~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~---~~~g~~~~--d~~~l~~~i~~ll~~~~~--~l~~~~~---~~~ 377 (518)
|..|+||++++||||||+|||+++.++ .|++.+ +.+|++++ |+++++++|.++++|++. +|+++++ ++|
T Consensus 339 S~~E~~g~~vlEAmA~G~PVI~s~~gg~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~f 418 (465)
T PLN02871 339 SESETLGFVVLEAMASGVPVVAARAGGIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPELRERMGAAAREEVEKW 418 (465)
T ss_pred CcccccCcHHHHHHHcCCCEEEcCCCCcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999998 899998 99999974 999999999999998875 7888777 789
Q ss_pred CHHHHHHHHHH-HHHhcCC
Q 010098 378 SWESATERFLQ-VAELVGD 395 (518)
Q Consensus 378 sw~~~~~~~~~-~y~~~~~ 395 (518)
||+.+++++++ .|+....
T Consensus 419 sw~~~a~~l~~~~Y~~~~~ 437 (465)
T PLN02871 419 DWRAATRKLRNEQYSAAIW 437 (465)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 99999999998 7997663
No 4
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=1.2e-37 Score=337.25 Aligned_cols=381 Identities=16% Similarity=0.113 Sum_probs=252.8
Q ss_pred cccEEEEEeeccCC-----------cccccccchHHHHHHHHhcCC-eeEEEEeccCCcccccccCCCCcccCChhHHHH
Q 010098 4 KQQHIAIFTTASLP-----------WLTGTAVNPLFRAAYLAKDGE-RRVTLVIPWLSLIHQKQVYPGNITFASPKEQEA 71 (518)
Q Consensus 4 ~~~rI~ivt~~~~P-----------~~~G~~~~~~~~a~~L~~~gg-~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~ 71 (518)
+++.|++|+-..+| ..+|..++..++++.|++.|| |+|+|+|-.....+....|+.......+...++
T Consensus 168 ~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~ 247 (1050)
T TIGR02468 168 KKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSEN 247 (1050)
T ss_pred CceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccccccccccc
Confidence 45899999966553 346677788999999999865 499999985532111111221111111100000
Q ss_pred HHHHhhhcccCCCC---CCcccccCc-ccccccccccch----hhHHhhcC--------------CCCCcEEEEcCCchh
Q 010098 72 YVRWWLEDRTGFTS---TFDTRFYPG-KFAADKKSILAV----GDITEIIP--------------DEEADIAVLEEPEHL 129 (518)
Q Consensus 72 ~~~~~~~~~~~~~~---~~~i~~~~~-~~~~~~~~i~~~----~~l~~~i~--------------~~~~Dvi~~~~~~~~ 129 (518)
.. ......+ -.++++.|. +|..+...+-.+ ..+...+. ...||+||.|+....
T Consensus 248 ~~-----~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG 322 (1050)
T TIGR02468 248 DG-----DEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAG 322 (1050)
T ss_pred cc-----ccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHH
Confidence 00 0001111 135566666 344444331111 11122221 114999999987766
Q ss_pred hhhhchHHHHhhcC-CEEEEEeCChhhhhhhh-cchH---------HHHHHHHHHHHHHhhhhccEEEEeChhhhc----
Q 010098 130 TWFHHGKRWKAKFR-FVVGIVHTNYLEYVKRE-KNDR---------LQAFLLEFVNSWLARVHCHKVIRLSAATQE---- 194 (518)
Q Consensus 130 ~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~-~~~~---------~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~---- 194 (518)
..+..+++.++ |+|+|+|+......... ..+. ......-....+... .||.||++|...++
T Consensus 323 ---~aa~~L~~~lgVP~V~T~HSLgr~K~~~ll~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~-~Ad~VIasT~qE~~eq~~ 398 (1050)
T TIGR02468 323 ---DSAALLSGALNVPMVLTGHSLGRDKLEQLLKQGRMSKEEINSTYKIMRRIEAEELSLD-ASEIVITSTRQEIEEQWG 398 (1050)
T ss_pred ---HHHHHHHHhhCCCEEEECccchhhhhhhhcccccccccccccccchHHHHHHHHHHHH-hcCEEEEeCHHHHHHHHH
Confidence 33666778877 99999998754432211 0110 000001111233333 38999999966554
Q ss_pred -c---C----------------------CCceecccccCCCCcCcchhhHH--------------------HhhcCCCCc
Q 010098 195 -Y---P----------------------NSIVCNVHGVNPKFLEIGEKKME--------------------QQQNGNKAF 228 (518)
Q Consensus 195 -~---~----------------------~~~~~~~~GVd~~~~~~~~~~~~--------------------~~~~~~~~~ 228 (518)
| . .+..++++|||+..|.|...... .......++
T Consensus 399 lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~pd 478 (1050)
T TIGR02468 399 LYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWSEIMRFFTNPR 478 (1050)
T ss_pred HhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccchhhHHHHhhcccCC
Confidence 1 1 13456678999988876421110 011223456
Q ss_pred ccEEEEEEeecccCCHHHHHHHHHHHHHhc--CCcEEEEEeCCCCh-----------HHHHHHHHHcCCe--EEEeCC--
Q 010098 229 TKGAYYIGRMVWSKGYEELLGLLNIYHKEL--AGLEMDLYGNGEDF-----------DQIQRAAKKLKLV--VRVYPG-- 291 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~--~~~~l~ivG~g~~~-----------~~l~~~~~~~~l~--v~~~~~-- 291 (518)
.++|+|+||+.++||++.||+|+.+++... +++. +|+|+|++. ..++.+++++++. +.|.|.
T Consensus 479 kpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~g~V~FlG~v~ 557 (1050)
T TIGR02468 479 KPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLYGQVAYPKHHK 557 (1050)
T ss_pred CcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCCCCeEEecCCCC
Confidence 789999999999999999999999987543 4555 466876542 4567888888886 555553
Q ss_pred CCChHHHHhhc----CeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhC
Q 010098 292 RDHADPIFHDY----KVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAE 364 (518)
Q Consensus 292 ~~~~~~l~~~a----dv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~ 364 (518)
.+++.++|+.| |+||+||.+|+||++++||||||+|||+|+.|| .|++.++.+|++++ |+++|+++|.++++|
T Consensus 558 ~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG~~EII~~g~nGlLVdP~D~eaLA~AL~~LL~D 637 (1050)
T TIGR02468 558 QSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIHRVLDNGLLVDPHDQQAIADALLKLVAD 637 (1050)
T ss_pred HHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCCcHHHhccCCcEEEECCCCHHHHHHHHHHHhhC
Confidence 56777999988 699999999999999999999999999999998 99999999999985 999999999999999
Q ss_pred CCC--CCChHHH---hcCCHHHHHHHHHHHHHhcC
Q 010098 365 EPA--QPTDAQT---HQLSWESATERFLQVAELVG 394 (518)
Q Consensus 365 ~~~--~l~~~~~---~~~sw~~~~~~~~~~y~~~~ 394 (518)
++. +|+++++ ++|||+.++++|++.++...
T Consensus 638 pelr~~m~~~gr~~v~~FSWe~ia~~yl~~i~~~~ 672 (1050)
T TIGR02468 638 KQLWAECRQNGLKNIHLFSWPEHCKTYLSRIASCR 672 (1050)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHh
Confidence 886 8888777 77999999999999998654
No 5
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=4.4e-37 Score=316.15 Aligned_cols=349 Identities=15% Similarity=0.114 Sum_probs=246.9
Q ss_pred EEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCCC
Q 010098 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 86 (518)
Q Consensus 7 rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (518)
||+++++.|.|..+|.+..+..+++.|.+.| |+|+|+++............+++ ++...+.
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G-~~V~v~~~~~~~~~~~~~~~~~i------------------~v~~~p~ 61 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRG-HKVVVITHAYGNRVGIRYLTNGL------------------KVYYLPF 61 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcC-CeeEEEeccCCcCCCcccccCce------------------eEEEecc
Confidence 7999999999999999999999999999998 99999998321000000000000 0110000
Q ss_pred CcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHH
Q 010098 87 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRL 165 (518)
Q Consensus 87 ~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~ 165 (518)
..... ..... .....+..+.+.+++.+||+||+|++...... .+..+++..+ |+|.+.|+.+.... .
T Consensus 62 ~~~~~-~~~~~---~~~~~~~~l~~~~~~~~~DiIh~~~~~~~~~~-~~~~~~~~~~~~~v~t~h~~~~~~~-------~ 129 (398)
T cd03796 62 VVFYN-QSTLP---TFFGTFPLLRNILIRERITIVHGHQAFSALAH-EALLHARTMGLKTVFTDHSLFGFAD-------A 129 (398)
T ss_pred eeccC-Ccccc---chhhhHHHHHHHHHhcCCCEEEECCCCchHHH-HHHHHhhhcCCcEEEEecccccccc-------h
Confidence 00000 00000 00112345777788889999999987544111 1223445445 89999996542110 0
Q ss_pred HHHHHHHHHHHHhhhhccEEEEeChhhhcc-------CC-CceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEe
Q 010098 166 QAFLLEFVNSWLARVHCHKVIRLSAATQEY-------PN-SIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGR 237 (518)
Q Consensus 166 ~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~-------~~-~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr 237 (518)
.........++..+ ++|.++++|...++. .. +....++|+|...|.+.... ..++.++++|+||
T Consensus 130 ~~~~~~~~~~~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~~-------~~~~~~~i~~~gr 201 (398)
T cd03796 130 SSIHTNKLLRFSLA-DVDHVICVSHTSKENTVLRASLDPERVSVIPNAVDSSDFTPDPSK-------RDNDKITIVVISR 201 (398)
T ss_pred hhHHhhHHHHHhhc-cCCEEEEecHhHhhHHHHHhCCChhhEEEEcCccCHHHcCCCccc-------CCCCceEEEEEec
Confidence 01111222233333 379999999776542 12 23455679998776543221 2234688999999
Q ss_pred ecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCe--EEEeCCC--CChHHHHhhcCeeEecCCCCC
Q 010098 238 MVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGR--DHADPIFHDYKVFLNPSTTDV 313 (518)
Q Consensus 238 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~--v~~~~~~--~~~~~l~~~adv~v~pS~~E~ 313 (518)
+.++||++.+++++..+.++.++++|+++|+|+..+.++++++++++. +.+.|.. +++.++|+.+|++++||..|+
T Consensus 202 l~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~ 281 (398)
T cd03796 202 LVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEA 281 (398)
T ss_pred cchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhc
Confidence 999999999999999998888999999999999889999999998875 5667754 567799999999999999999
Q ss_pred CchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeCCHHHHHHHHHHHHhCCCC--CCChHHH----hcCCHHHHHHHH
Q 010098 314 VCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQT----HQLSWESATERF 386 (518)
Q Consensus 314 ~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~~~--~l~~~~~----~~~sw~~~~~~~ 386 (518)
||++++||||||+|||+++.|+ .|++.++.+++..+|+++++++|.++++++.. .+.++++ ++|||+.+++++
T Consensus 282 ~g~~~~EAma~G~PVI~s~~gg~~e~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~ 361 (398)
T cd03796 282 FCIAIVEAASCGLLVVSTRVGGIPEVLPPDMILLAEPDVESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSWEDVAKRT 361 (398)
T ss_pred cCHHHHHHHHcCCCEEECCCCCchhheeCCceeecCCCHHHHHHHHHHHHhChhhhhhHHHHHHHHHHhhCCHHHHHHHH
Confidence 9999999999999999999998 89998876555556999999999999987654 3444444 889999999999
Q ss_pred HHHHHhcC
Q 010098 387 LQVAELVG 394 (518)
Q Consensus 387 ~~~y~~~~ 394 (518)
+++|+...
T Consensus 362 ~~~y~~l~ 369 (398)
T cd03796 362 EKVYDRIL 369 (398)
T ss_pred HHHHHHHh
Confidence 99999765
No 6
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=5.7e-36 Score=309.41 Aligned_cols=369 Identities=15% Similarity=0.066 Sum_probs=248.7
Q ss_pred cEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhh-hcccCCC
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWL-EDRTGFT 84 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~ 84 (518)
|||++++..|+|..+|++.++..++++|.+.| |+|+|+|+... ||.......... ..+..... ..++.
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G-~~V~vit~~~~-------~~~~~~~~~~~~-~~~~~~~~~~i~v~-- 69 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARG-HEVRVITAPPY-------YPQWRVGEGYSA-WRYRRESEGGVTVW-- 69 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCC-CeEEEEecCCC-------CCCCCCCccccc-ccceeeecCCeEEE--
Confidence 79999999999999999999999999999998 99999997311 111000000000 00000000 00011
Q ss_pred CCCcccccCccccccccccc-----ch---hhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhh
Q 010098 85 STFDTRFYPGKFAADKKSIL-----AV---GDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLE 155 (518)
Q Consensus 85 ~~~~i~~~~~~~~~~~~~i~-----~~---~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~ 155 (518)
+++.+........+.+. .+ ..+.+.++ .+||+||+|++...... .+..+++..+ |++.++|+.+++
T Consensus 70 ---r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Div~~~~p~~~~~~-~~~~~~~~~~~~~v~~~~d~~~~ 144 (412)
T PRK10307 70 ---RCPLYVPKQPSGLKRLLHLGSFALSSFFPLLAQRR-WRPDRVIGVVPTLFCAP-GARLLARLSGARTWLHIQDYEVD 144 (412)
T ss_pred ---EccccCCCCccHHHHHHHHHHHHHHHHHHHhhccC-CCCCEEEEeCCcHHHHH-HHHHHHHhhCCCEEEEeccCCHH
Confidence 11110000000000000 01 11222222 68999999987654222 1333455555 888888866543
Q ss_pred hhhhhc--chHHHHHHHHHHHHHHhhhhccEEEEeChhhhccC------C-CceecccccCCCCcCcchh---hHHHhhc
Q 010098 156 YVKREK--NDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYP------N-SIVCNVHGVNPKFLEIGEK---KMEQQQN 223 (518)
Q Consensus 156 ~~~~~~--~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~------~-~~~~~~~GVd~~~~~~~~~---~~~~~~~ 223 (518)
.....+ .+.....+...+.+++.+. +|.++++|+..++.. . +..+..+|+|.+.|.+... ...+.+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-ad~ii~~S~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~ 223 (412)
T PRK10307 145 AAFGLGLLKGGKVARLATAFERSLLRR-FDNVSTISRSMMNKAREKGVAAEKVIFFPNWSEVARFQPVADADVDALRAQL 223 (412)
T ss_pred HHHHhCCccCcHHHHHHHHHHHHHHhh-CCEEEecCHHHHHHHHHcCCCcccEEEECCCcCHhhcCCCCccchHHHHHHc
Confidence 321111 1111222333344444443 899999998877632 1 2334557999877654322 1234456
Q ss_pred CCCCcccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCe-EEEeCCC--CChHHHHh
Q 010098 224 GNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV-VRVYPGR--DHADPIFH 300 (518)
Q Consensus 224 ~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~-v~~~~~~--~~~~~l~~ 300 (518)
+.+++.++++|+|++.+.||++.|++|+.++. +.++++|+|+|+|+..++++++++.+++. +.+.|.. +++.++|+
T Consensus 224 ~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l~-~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~ 302 (412)
T PRK10307 224 GLPDGKKIVLYSGNIGEKQGLELVIDAARRLR-DRPDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALLK 302 (412)
T ss_pred CCCCCCEEEEEcCccccccCHHHHHHHHHHhc-cCCCeEEEEECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHH
Confidence 66666789999999999999999999999885 45789999999999999999999988776 6667644 46669999
Q ss_pred hcCeeEecCCCCC----CchHHHHHHHcCCeEEeeCCCC---ccccccCCcEEee--CCHHHHHHHHHHHHhCCCC--CC
Q 010098 301 DYKVFLNPSTTDV----VCTATAEALAMGKIVVCANHPS---NDFFKQFPNCRTY--DGRNGFVEATLKALAEEPA--QP 369 (518)
Q Consensus 301 ~adv~v~pS~~E~----~~~~~lEAma~G~PVV~t~~g~---~e~i~~~~~g~~~--~d~~~l~~~i~~ll~~~~~--~l 369 (518)
.||++++||..|+ +|.+++||||||+|||+|+.++ .+++. .+|+++ +|+++++++|.++++|++. +|
T Consensus 303 ~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~--~~G~~~~~~d~~~la~~i~~l~~~~~~~~~~ 380 (412)
T PRK10307 303 MADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTELGQLVE--GIGVCVEPESVEALVAAIAALARQALLRPKL 380 (412)
T ss_pred hcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHh--CCcEEeCCCCHHHHHHHHHHHHhCHHHHHHH
Confidence 9999999999888 6888999999999999999875 46776 588887 4999999999999998875 88
Q ss_pred ChHHH----hcCCHHHHHHHHHHHHHhcC
Q 010098 370 TDAQT----HQLSWESATERFLQVAELVG 394 (518)
Q Consensus 370 ~~~~~----~~~sw~~~~~~~~~~y~~~~ 394 (518)
+++++ ++|||+.+++++.++|+...
T Consensus 381 ~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 409 (412)
T PRK10307 381 GTVAREYAERTLDKENVLRQFIADIRGLV 409 (412)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHh
Confidence 88888 68999999999999999654
No 7
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=2.1e-35 Score=308.74 Aligned_cols=373 Identities=16% Similarity=0.145 Sum_probs=241.7
Q ss_pred cEEEEEeeccCCc--ccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhh------
Q 010098 6 QHIAIFTTASLPW--LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWL------ 77 (518)
Q Consensus 6 ~rI~ivt~~~~P~--~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~------ 77 (518)
|||++||..+.|. .+|.+.....++++|++.| |+|.|++|.+...... .+........ ...+.|.
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G-~~V~v~~p~y~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~ 73 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALG-HDVRVLLPGYPAIREK--LRDAQVVGRL----DLFTVLFGHLEGD 73 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCC-CcEEEEecCCcchhhh--hcCceEEEEe----eeEEEEEEeEEcC
Confidence 7999999998888 7898888999999999998 9999999976432111 0000000000 0000000
Q ss_pred hcccCCCCCCc----ccccCcccccccccccchhhHHhhcC--CCCCcEEEEcCCchhhhhhchHHHHhhc------CCE
Q 010098 78 EDRTGFTSTFD----TRFYPGKFAADKKSILAVGDITEIIP--DEEADIAVLEEPEHLTWFHHGKRWKAKF------RFV 145 (518)
Q Consensus 78 ~~~~~~~~~~~----i~~~~~~~~~~~~~i~~~~~l~~~i~--~~~~Dvi~~~~~~~~~~~~~~~~~~~~~------~~~ 145 (518)
..++.+..... -..|.. .....+..+......++++ ..+|||||+|++... +. +..++..+ .|+
T Consensus 74 gv~v~~v~~~~~~~~~~~y~~-~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~-~~--~~~l~~~~~~~~~~~~~ 149 (466)
T PRK00654 74 GVPVYLIDAPHLFDRPSGYGY-PDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTG-LI--PALLKEKYWRGYPDIKT 149 (466)
T ss_pred CceEEEEeCHHHcCCCCCCCC-cChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHH-HH--HHHHHHhhhccCCCCCE
Confidence 00000000000 000100 0000010001111223332 248999999986554 33 33343331 389
Q ss_pred EEEEeCChhh-hh-----hhhcch--HH-HHHH-----HHHHHHHHhhhhccEEEEeChhhhccC---------------
Q 010098 146 VGIVHTNYLE-YV-----KREKND--RL-QAFL-----LEFVNSWLARVHCHKVIRLSAATQEYP--------------- 196 (518)
Q Consensus 146 v~~~h~~~~~-~~-----~~~~~~--~~-~~~~-----~~~~~~~~~~~~ad~vi~~S~~~~~~~--------------- 196 (518)
|+|+|..... .. ...... .+ ...+ ...+ +...+ +||.|+++|+..++..
T Consensus 150 v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~ 227 (466)
T PRK00654 150 VFTIHNLAYQGLFPAEILGELGLPAEAFHLEGLEFYGQISFL-KAGLY-YADRVTTVSPTYAREITTPEFGYGLEGLLRA 227 (466)
T ss_pred EEEcCCCcCCCcCCHHHHHHcCCChHHcCchhhhcCCcccHH-HHHHH-hcCcCeeeCHHHHHHhccccCCcChHHHHHh
Confidence 9999965211 00 000000 00 0000 0011 11122 4899999997765421
Q ss_pred --CCceecccccCCCCcCcchh-------------------hHHHhhcCCCC-cccEEEEEEeecccCCHHHHHHHHHHH
Q 010098 197 --NSIVCNVHGVNPKFLEIGEK-------------------KMEQQQNGNKA-FTKGAYYIGRMVWSKGYEELLGLLNIY 254 (518)
Q Consensus 197 --~~~~~~~~GVd~~~~~~~~~-------------------~~~~~~~~~~~-~~~~il~vGr~~~~Kg~~~ll~a~~~l 254 (518)
.+...++||||.+.|.|... ...+...++++ +.++++|+||+.++||++.+++|+.++
T Consensus 228 ~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l 307 (466)
T PRK00654 228 RSGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPEL 307 (466)
T ss_pred cccCceEecCCCCccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHH
Confidence 13345668999988766421 12234455553 578999999999999999999999998
Q ss_pred HHhcCCcEEEEEeCCCC--hHHHHHHHHHcCCeEEEeCCCCC--hHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEe
Q 010098 255 HKELAGLEMDLYGNGED--FDQIQRAAKKLKLVVRVYPGRDH--ADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVC 330 (518)
Q Consensus 255 ~~~~~~~~l~ivG~g~~--~~~l~~~~~~~~l~v~~~~~~~~--~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~ 330 (518)
.++ +++|+|+|+|+. .+.+++++++++..+.++.+.++ ...+|+.||+||+||.+|+||++++|||+||+|+|+
T Consensus 308 ~~~--~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~ 385 (466)
T PRK00654 308 LEQ--GGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIV 385 (466)
T ss_pred Hhc--CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEE
Confidence 765 799999999864 47888899888877666555443 347899999999999999999999999999999999
Q ss_pred eCCCC-ccccccC------CcEEeeC--CHHHHHHHHHHHHh---CCCC--CCChHHH-hcCCHHHHHHHHHHHHHhc
Q 010098 331 ANHPS-NDFFKQF------PNCRTYD--GRNGFVEATLKALA---EEPA--QPTDAQT-HQLSWESATERFLQVAELV 393 (518)
Q Consensus 331 t~~g~-~e~i~~~------~~g~~~~--d~~~l~~~i~~ll~---~~~~--~l~~~~~-~~~sw~~~~~~~~~~y~~~ 393 (518)
++.|| .|++.++ .+|++++ |+++++++|.++++ +++. +|++++. ++|||+.++++|+++|+..
T Consensus 386 ~~~gG~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~lY~~~ 463 (466)
T PRK00654 386 RRTGGLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYRQPPLWRALQRQAMAQDFSWDKSAEEYLELYRRL 463 (466)
T ss_pred eCCCCccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Confidence 99998 9999888 8999974 99999999999887 3333 6666666 8899999999999999864
No 8
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=3e-35 Score=303.47 Aligned_cols=364 Identities=16% Similarity=0.104 Sum_probs=246.3
Q ss_pred EEEEeeccCCcc-------cccccchHHHHHHHHhcCCeeEEEEeccCCcccccccC-CCCcccCChhHHHHHHHHhhhc
Q 010098 8 IAIFTTASLPWL-------TGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVY-PGNITFASPKEQEAYVRWWLED 79 (518)
Q Consensus 8 I~ivt~~~~P~~-------~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~ 79 (518)
|++++....|+. +|.+.++..++++|.++| |+|+|+|++.......... -+++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~GG~e~~v~~la~~L~~~G-~~V~v~~~~~~~~~~~~~~~~~~~~v~--------------- 64 (405)
T TIGR03449 1 VAMISMHTSPLQQPGTGDAGGMNVYILETATELARRG-IEVDIFTRATRPSQPPVVEVAPGVRVR--------------- 64 (405)
T ss_pred CeEEeccCCccccCCCcCCCCceehHHHHHHHHhhCC-CEEEEEecccCCCCCCccccCCCcEEE---------------
Confidence 578888888866 888999999999999998 9999999843211110000 0011000
Q ss_pred ccCCCCCCcccccCcccccccccccchhhHHhhcC--CCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhh
Q 010098 80 RTGFTSTFDTRFYPGKFAADKKSILAVGDITEIIP--DEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEY 156 (518)
Q Consensus 80 ~~~~~~~~~i~~~~~~~~~~~~~i~~~~~l~~~i~--~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~ 156 (518)
++...+...... .++..... .+....+..+++ ..+||+||+|..... +. +..+++..+ |+|.++|+.....
T Consensus 65 ~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~Diih~h~~~~~-~~--~~~~~~~~~~p~v~t~h~~~~~~ 138 (405)
T TIGR03449 65 NVVAGPYEGLDK--EDLPTQLC-AFTGGVLRAEARHEPGYYDLIHSHYWLSG-QV--GWLLRDRWGVPLVHTAHTLAAVK 138 (405)
T ss_pred EecCCCcccCCH--HHHHHHHH-HHHHHHHHHHhhccCCCCCeEEechHHHH-HH--HHHHHHhcCCCEEEeccchHHHH
Confidence 000000000000 00000000 000111223333 247999999985443 22 333444445 8999999764321
Q ss_pred hhhhcch-HHHHHHHHHHHHHHhhhhccEEEEeChhhhc-c------C-CCceecccccCCCCcCcchhhHHHhhcCCCC
Q 010098 157 VKREKND-RLQAFLLEFVNSWLARVHCHKVIRLSAATQE-Y------P-NSIVCNVHGVNPKFLEIGEKKMEQQQNGNKA 227 (518)
Q Consensus 157 ~~~~~~~-~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~-~------~-~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~ 227 (518)
....... ...........+.+.+ .||.++++|+...+ + . .+..+..+|+|.+.|.+......+...+.+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~e~~~~~-~~d~vi~~s~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~ 217 (405)
T TIGR03449 139 NAALADGDTPEPEARRIGEQQLVD-NADRLIANTDEEARDLVRHYDADPDRIDVVAPGADLERFRPGDRATERARLGLPL 217 (405)
T ss_pred HHhccCCCCCchHHHHHHHHHHHH-hcCeEEECCHHHHHHHHHHcCCChhhEEEECCCcCHHHcCCCcHHHHHHhcCCCC
Confidence 1110000 0011122222233333 37999999976444 1 1 1233556899998776554444455566666
Q ss_pred cccEEEEEEeecccCCHHHHHHHHHHHHHhcCC--cEEEEEeC----C-CChHHHHHHHHHcCCe--EEEeCCC--CChH
Q 010098 228 FTKGAYYIGRMVWSKGYEELLGLLNIYHKELAG--LEMDLYGN----G-EDFDQIQRAAKKLKLV--VRVYPGR--DHAD 296 (518)
Q Consensus 228 ~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~--~~l~ivG~----g-~~~~~l~~~~~~~~l~--v~~~~~~--~~~~ 296 (518)
+.++|+|+|++.+.||++.++++++++.++.|+ ++|+++|+ | +..++++++++++++. +.+.|.. +++.
T Consensus 218 ~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~ 297 (405)
T TIGR03449 218 DTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELV 297 (405)
T ss_pred CCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHH
Confidence 678999999999999999999999999887776 99999996 3 3457888999988875 6666654 4566
Q ss_pred HHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC--CCCh
Q 010098 297 PIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTD 371 (518)
Q Consensus 297 ~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~--~l~~ 371 (518)
++|+.||++++||..|+||++++|||+||+|||+++.|+ .|++.++.+|++++ |+++++++|.+++++++. +|++
T Consensus 298 ~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~ 377 (405)
T TIGR03449 298 HVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGGLPVAVADGETGLLVDGHDPADWADALARLLDDPRTRIRMGA 377 (405)
T ss_pred HHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCCcHhhhccCCceEECCCCCHHHHHHHHHHHHhCHHHHHHHHH
Confidence 999999999999999999999999999999999999998 99999999999975 999999999999998775 7777
Q ss_pred HHH---hcCCHHHHHHHHHHHHHhcC
Q 010098 372 AQT---HQLSWESATERFLQVAELVG 394 (518)
Q Consensus 372 ~~~---~~~sw~~~~~~~~~~y~~~~ 394 (518)
+++ ++|||+.++++++++|+...
T Consensus 378 ~~~~~~~~fsw~~~~~~~~~~y~~~~ 403 (405)
T TIGR03449 378 AAVEHAAGFSWAATADGLLSSYRDAL 403 (405)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 766 78999999999999998643
No 9
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=3.6e-35 Score=298.93 Aligned_cols=350 Identities=18% Similarity=0.173 Sum_probs=247.2
Q ss_pred cEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCC
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTS 85 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (518)
|||++++. |..+|.+.....++++|.+.| |+|+|++..... ......+ .+.+.. .....
T Consensus 1 mki~~~~~---p~~gG~~~~~~~la~~L~~~G-~~v~v~~~~~~~-~~~~~~~-~~~~~~-------------~~~~~-- 59 (371)
T cd04962 1 MKIGIVCY---PTYGGSGVVATELGKALARRG-HEVHFITSSRPF-RLDEYSP-NIFFHE-------------VEVPQ-- 59 (371)
T ss_pred CceeEEEE---eCCCCccchHHHHHHHHHhcC-CceEEEecCCCc-chhhhcc-CeEEEE-------------ecccc--
Confidence 68999973 778999999999999999998 999999872100 0000000 000000 00000
Q ss_pred CCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhc-hHHHHhh-cCCEEEEEeCChhhhhhhhcch
Q 010098 86 TFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHH-GKRWKAK-FRFVVGIVHTNYLEYVKREKND 163 (518)
Q Consensus 86 ~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~-~~~~~~~-~~~~v~~~h~~~~~~~~~~~~~ 163 (518)
......+. ........+.+.+++.+||+||+|++....+... ...+.++ ..|++.++|...........
T Consensus 60 -~~~~~~~~------~~~~~~~~l~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~-- 130 (371)
T cd04962 60 -YPLFQYPP------YDLALASKIAEVAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITLVGQDP-- 130 (371)
T ss_pred -cchhhcch------hHHHHHHHHHHHHhcCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccccccccc--
Confidence 00000000 0011134577778889999999997643211111 1111111 23889999964322111100
Q ss_pred HHHHHHHHHHHHHHhhhhccEEEEeChhhhcc-------CCCceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEE
Q 010098 164 RLQAFLLEFVNSWLARVHCHKVIRLSAATQEY-------PNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIG 236 (518)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~-------~~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vG 236 (518)
....+.++..+ .||.+++.|+..++. ..+..+..+|++...+.+......+...+..++.+.++|+|
T Consensus 131 -----~~~~~~~~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~i~vi~n~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g 204 (371)
T cd04962 131 -----SFQPATRFSIE-KSDGVTAVSESLRQETYELFDITKEIEVIPNFVDEDRFRPKPDEALKRRLGAPEGEKVLIHIS 204 (371)
T ss_pred -----cchHHHHHHHh-hCCEEEEcCHHHHHHHHHhcCCcCCEEEecCCcCHhhcCCCchHHHHHhcCCCCCCeEEEEec
Confidence 11112222223 379999999877662 12233445788877665544433344555666678899999
Q ss_pred eecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCe--EEEeCCCCChHHHHhhcCeeEecCCCCCC
Q 010098 237 RMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRDHADPIFHDYKVFLNPSTTDVV 314 (518)
Q Consensus 237 r~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~--v~~~~~~~~~~~l~~~adv~v~pS~~E~~ 314 (518)
++.+.||++.+++++.++.++ ++++++++|.|++.+.+++.++++++. +.+.|..+++.++|+.||++|+||..|+|
T Consensus 205 ~l~~~K~~~~li~a~~~l~~~-~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~v~ps~~E~~ 283 (371)
T cd04962 205 NFRPVKRIDDVIRIFAKVRKE-VPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSEKESF 283 (371)
T ss_pred ccccccCHHHHHHHHHHHHhc-CCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCEEEeCCCcCCC
Confidence 999999999999999998765 469999999999999999999888764 67788888999999999999999999999
Q ss_pred chHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC--CCChHHH----hcCCHHHHHHH
Q 010098 315 CTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT----HQLSWESATER 385 (518)
Q Consensus 315 ~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~--~l~~~~~----~~~sw~~~~~~ 385 (518)
|++++|||+||+|||+|+.|+ .|++.++.+|++++ |++++++++.+++++++. +|+++++ ++|||+.++++
T Consensus 284 ~~~~~EAma~g~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~ 363 (371)
T cd04962 284 GLAALEAMACGVPVVASNAGGIPEVVKHGETGFLVDVGDVEAMAEYALSLLEDDELWQEFSRAARNRAAERFDSERIVPQ 363 (371)
T ss_pred ccHHHHHHHcCCCEEEeCCCCchhhhcCCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999999999999998 99999999999975 999999999999998875 7777666 78999999999
Q ss_pred HHHHHHh
Q 010098 386 FLQVAEL 392 (518)
Q Consensus 386 ~~~~y~~ 392 (518)
+.++|+.
T Consensus 364 ~~~~y~~ 370 (371)
T cd04962 364 YEALYRR 370 (371)
T ss_pred HHHHHHh
Confidence 9999984
No 10
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=3e-34 Score=290.09 Aligned_cols=347 Identities=18% Similarity=0.210 Sum_probs=249.3
Q ss_pred EEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCCC
Q 010098 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 86 (518)
Q Consensus 7 rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (518)
||++++..|+|..+|++.++..++++|.+.| |+|+++++.... ....+. .. ..+..
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g-~~v~~~~~~~~~--~~~~~~--------~~----------~~~~~--- 56 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARG-HEVLVIAPGPFR--ESEGPA--------RV----------VPVPS--- 56 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCC-CEEEEEeCCchh--hccCCC--------Cc----------eeecc---
Confidence 7999999999998999999999999999998 999999883211 000000 00 00000
Q ss_pred CcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHH
Q 010098 87 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRL 165 (518)
Q Consensus 87 ~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~ 165 (518)
.....+.. . .........+.+.+++.+||+||++.+....+. +..++++.+ |++..+|+.++.+.........
T Consensus 57 ~~~~~~~~-~---~~~~~~~~~~~~~~~~~~pdii~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 130 (364)
T cd03814 57 VPLPGYPE-I---RLALPPRRRVRRLLDAFAPDVVHIATPGPLGLA--ALRAARRLGIPVVTSYHTDFPEYLRYYGLGPL 130 (364)
T ss_pred cccCcccc-e---EecccchhhHHHHHHhcCCCEEEEeccchhhHH--HHHHHHHcCCCEEEEEecChHHHhhhcccchH
Confidence 00111110 0 000111334667778889999999987665444 444555555 8999999887765543322222
Q ss_pred HHHHHHHHHHHHhhhhccEEEEeChhhhccC-----CCceecccccCCCCcCcchhhHH-HhhcCCCCcccEEEEEEeec
Q 010098 166 QAFLLEFVNSWLARVHCHKVIRLSAATQEYP-----NSIVCNVHGVNPKFLEIGEKKME-QQQNGNKAFTKGAYYIGRMV 239 (518)
Q Consensus 166 ~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~-----~~~~~~~~GVd~~~~~~~~~~~~-~~~~~~~~~~~~il~vGr~~ 239 (518)
. .....+.+++.+ .+|.+++.|+..++.. .+..+..+|+|.+.+.+...... ....+ ..+.+.++|+|++.
T Consensus 131 ~-~~~~~~~~~~~~-~~d~i~~~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~G~~~ 207 (364)
T cd03814 131 S-WLAWAYLRWFHN-RADRVLVPSPSLADELRARGFRRVRLWPRGVDTELFHPRRRDEALRARLG-PPDRPVLLYVGRLA 207 (364)
T ss_pred h-HhhHHHHHHHHH-hCCEEEeCCHHHHHHHhccCCCceeecCCCccccccCcccccHHHHHHhC-CCCCeEEEEEeccc
Confidence 2 221223333333 3799999998877632 22233446888877765433221 22222 34467899999999
Q ss_pred ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeC--CCCChHHHHhhcCeeEecCCCCCCchH
Q 010098 240 WSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYP--GRDHADPIFHDYKVFLNPSTTDVVCTA 317 (518)
Q Consensus 240 ~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~--~~~~~~~l~~~adv~v~pS~~E~~~~~ 317 (518)
+.||++.+++++.++..+ ++++|+++|+|++.+.++ ....++.+.| +.+++.++|+.||++++||..|++|++
T Consensus 208 ~~k~~~~~i~~~~~l~~~-~~~~l~i~G~~~~~~~~~----~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~ 282 (364)
T cd03814 208 PEKNLEALLDADLPLRRR-PPVRLVIVGDGPARARLE----ARYPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLV 282 (364)
T ss_pred cccCHHHHHHHHHHhhhc-CCceEEEEeCCchHHHHh----ccCCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcH
Confidence 999999999999999877 899999999988776665 3344577777 455677999999999999999999999
Q ss_pred HHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC--CCChHHH---hcCCHHHHHHHHHHH
Q 010098 318 TAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT---HQLSWESATERFLQV 389 (518)
Q Consensus 318 ~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~--~l~~~~~---~~~sw~~~~~~~~~~ 389 (518)
++||||||+|||+++.++ .|++.++.+|++++ |.++++++|.++++|++. +++++++ ++|+|+.+++++.++
T Consensus 283 ~lEa~a~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (364)
T cd03814 283 VLEAMASGLPVVAPDAGGPADIVTDGENGLLVEPGDAEAFAAALAALLADPELRRRMAARARAEAERRSWEAFLDNLLEA 362 (364)
T ss_pred HHHHHHcCCCEEEcCCCCchhhhcCCcceEEcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHh
Confidence 999999999999999998 89999989999874 888899999999999886 7777777 589999999999998
Q ss_pred HH
Q 010098 390 AE 391 (518)
Q Consensus 390 y~ 391 (518)
|+
T Consensus 363 ~~ 364 (364)
T cd03814 363 YR 364 (364)
T ss_pred hC
Confidence 84
No 11
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=4.1e-34 Score=291.82 Aligned_cols=345 Identities=13% Similarity=0.111 Sum_probs=241.0
Q ss_pred cEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCC
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTS 85 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (518)
.+|+.+..+. ..+|.......++++|.+.| |++++++... .+. + . ...... .+..
T Consensus 2 ~~il~ii~~~--~~GG~e~~~~~l~~~l~~~~-~~~~v~~~~~--~~~---~---------~---~~~~~~---~i~~-- 56 (374)
T TIGR03088 2 PLIVHVVYRF--DVGGLENGLVNLINHLPADR-YRHAVVALTE--VSA---F---------R---KRIQRP---DVAF-- 56 (374)
T ss_pred ceEEEEeCCC--CCCcHHHHHHHHHhhccccc-cceEEEEcCC--CCh---h---------H---HHHHhc---CceE--
Confidence 5899998887 45787788889999999987 9998887511 000 0 0 000000 0000
Q ss_pred CCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-C-EEEEEeCChhhhhhhhcch
Q 010098 86 TFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-F-VVGIVHTNYLEYVKREKND 163 (518)
Q Consensus 86 ~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~-~v~~~h~~~~~~~~~~~~~ 163 (518)
..+...+ ...+..+..+.+++++.+||+||+|+.... . +...+...+ | .+.+.|... .+... ..
T Consensus 57 -~~~~~~~------~~~~~~~~~l~~~l~~~~~Divh~~~~~~~--~--~~~~~~~~~~~~~i~~~h~~~-~~~~~--~~ 122 (374)
T TIGR03088 57 -YALHKQP------GKDVAVYPQLYRLLRQLRPDIVHTRNLAAL--E--AQLPAALAGVPARIHGEHGRD-VFDLD--GS 122 (374)
T ss_pred -EEeCCCC------CCChHHHHHHHHHHHHhCCCEEEEcchhHH--H--HHHHHHhcCCCeEEEeecCcc-cccch--hh
Confidence 0010000 011112445778888999999999976433 1 111222223 3 344444221 11100 00
Q ss_pred HHHHHHHHHHHHHHhhhhccEEEEeChhhhccC-------C-CceecccccCCCCcCcchhhH--HHhhcCCCCcccEEE
Q 010098 164 RLQAFLLEFVNSWLARVHCHKVIRLSAATQEYP-------N-SIVCNVHGVNPKFLEIGEKKM--EQQQNGNKAFTKGAY 233 (518)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~-------~-~~~~~~~GVd~~~~~~~~~~~--~~~~~~~~~~~~~il 233 (518)
. .....+.++..+. +|.++++|+..+++. . +..+..+|+|.+.|.+..... .........+.++++
T Consensus 123 ~---~~~~~~~~~~~~~-~~~~i~vs~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 198 (374)
T TIGR03088 123 N---WKYRWLRRLYRPL-IHHYVAVSRDLEDWLRGPVKVPPAKIHQIYNGVDTERFHPSRGDRSPILPPDFFADESVVVG 198 (374)
T ss_pred H---HHHHHHHHHHHhc-CCeEEEeCHHHHHHHHHhcCCChhhEEEeccCccccccCCCccchhhhhHhhcCCCCCeEEE
Confidence 1 1122233334333 799999998776632 2 223455799988776543211 111222344578999
Q ss_pred EEEeecccCCHHHHHHHHHHHHHhcC----CcEEEEEeCCCChHHHHHHHHHcCCe--EEEeCCCCChHHHHhhcCeeEe
Q 010098 234 YIGRMVWSKGYEELLGLLNIYHKELA----GLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRDHADPIFHDYKVFLN 307 (518)
Q Consensus 234 ~vGr~~~~Kg~~~ll~a~~~l~~~~~----~~~l~ivG~g~~~~~l~~~~~~~~l~--v~~~~~~~~~~~l~~~adv~v~ 307 (518)
|+||+.+.||++.+++++.++.++.+ +++|+++|+|+..+++++.++++++. +.+.|..+++.++|+.+|++|+
T Consensus 199 ~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ 278 (374)
T TIGR03088 199 TVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVL 278 (374)
T ss_pred EEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCEEEe
Confidence 99999999999999999999987765 68999999999889999999998876 4456778899999999999999
Q ss_pred cCCCCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEee--CCHHHHHHHHHHHHhCCCC--CCChHHH----hcCC
Q 010098 308 PSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTY--DGRNGFVEATLKALAEEPA--QPTDAQT----HQLS 378 (518)
Q Consensus 308 pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~--~d~~~l~~~i~~ll~~~~~--~l~~~~~----~~~s 378 (518)
||..|+||++++|||+||+|||+|+.|+ .|++.++.+|+++ +|+++++++|.+++++++. .++++++ ++||
T Consensus 279 pS~~Eg~~~~~lEAma~G~Pvv~s~~~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs 358 (374)
T TIGR03088 279 PSLAEGISNTILEAMASGLPVIATAVGGNPELVQHGVTGALVPPGDAVALARALQPYVSDPAARRAHGAAGRARAEQQFS 358 (374)
T ss_pred ccccccCchHHHHHHHcCCCEEEcCCCCcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999998 9999999999987 4999999999999998775 6777666 7999
Q ss_pred HHHHHHHHHHHHHhc
Q 010098 379 WESATERFLQVAELV 393 (518)
Q Consensus 379 w~~~~~~~~~~y~~~ 393 (518)
|+.+++++.++|+..
T Consensus 359 ~~~~~~~~~~~y~~~ 373 (374)
T TIGR03088 359 INAMVAAYAGLYDQL 373 (374)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999853
No 12
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=7.5e-34 Score=291.53 Aligned_cols=266 Identities=13% Similarity=0.097 Sum_probs=203.5
Q ss_pred HHhhcCCCCCcEEEEcCCchhhhhhchHHHHh--hcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEE
Q 010098 109 ITEIIPDEEADIAVLEEPEHLTWFHHGKRWKA--KFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKV 185 (518)
Q Consensus 109 l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~--~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v 185 (518)
+.+.+++.+||+||+|..... .. +..++. ... +++.++|..... ... .. ..........+.+ ||.+
T Consensus 110 ~~~~~~~~~~diihaH~~~~~-~~--~~~~~~~~~~~~~~~~t~Hg~d~~-~~~-~~----~~~~~~~~~~~~~--ad~v 178 (406)
T PRK15427 110 CAQVATPFVADVFIAHFGPAG-VT--AAKLRELGVLRGKIATIFHGIDIS-SRE-VL----NHYTPEYQQLFRR--GDLM 178 (406)
T ss_pred HhhhhccCCCCEEEEcCChHH-HH--HHHHHHhCCCCCCeEEEEcccccc-cch-hh----hhhhHHHHHHHHh--CCEE
Confidence 344567889999999987544 22 333433 222 678899954221 100 00 0111112222333 7999
Q ss_pred EEeChhhhccC------C-CceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEeecccCCHHHHHHHHHHHHHhc
Q 010098 186 IRLSAATQEYP------N-SIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKEL 258 (518)
Q Consensus 186 i~~S~~~~~~~------~-~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~ 258 (518)
+++|+..++.. . +..+..+|+|.+.|.+.... .......++|+||+.+.||++.+++|+..++++.
T Consensus 179 v~~S~~~~~~l~~~g~~~~ki~vi~nGvd~~~f~~~~~~-------~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~ 251 (406)
T PRK15427 179 LPISDLWAGRLQKMGCPPEKIAVSRMGVDMTRFSPRPVK-------APATPLEIISVARLTEKKGLHVAIEACRQLKEQG 251 (406)
T ss_pred EECCHHHHHHHHHcCCCHHHEEEcCCCCCHHHcCCCccc-------cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhC
Confidence 99998776632 1 22344579998877543211 1123467999999999999999999999999888
Q ss_pred CCcEEEEEeCCCChHHHHHHHHHcCCe--EEEeCCC--CChHHHHhhcCeeEecCCC------CCCchHHHHHHHcCCeE
Q 010098 259 AGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGR--DHADPIFHDYKVFLNPSTT------DVVCTATAEALAMGKIV 328 (518)
Q Consensus 259 ~~~~l~ivG~g~~~~~l~~~~~~~~l~--v~~~~~~--~~~~~l~~~adv~v~pS~~------E~~~~~~lEAma~G~PV 328 (518)
++++++++|+|+..++++++++++++. +.+.|.. +++.++|+.||+||+||.. |++|++++||||||+||
T Consensus 252 ~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PV 331 (406)
T PRK15427 252 VAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPV 331 (406)
T ss_pred CCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCE
Confidence 899999999999999999999999876 5666754 4566999999999999974 99999999999999999
Q ss_pred EeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHh-CCCC--CCChHHH----hcCCHHHHHHHHHHHHHh
Q 010098 329 VCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALA-EEPA--QPTDAQT----HQLSWESATERFLQVAEL 392 (518)
Q Consensus 329 V~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~-~~~~--~l~~~~~----~~~sw~~~~~~~~~~y~~ 392 (518)
|+|+.++ +|++.++.+|++++ |+++++++|.++++ |++. +|+++++ ++|+|+..++++.++|+.
T Consensus 332 I~t~~~g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 332 VSTLHSGIPELVEADKSGWLVPENDAQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred EEeCCCCchhhhcCCCceEEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 9999998 99999999999974 99999999999999 8875 8888887 889999999999999974
No 13
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=2.2e-34 Score=299.22 Aligned_cols=364 Identities=15% Similarity=0.126 Sum_probs=230.1
Q ss_pred EEEEEeecc-----------CCcccccccchHHHHHHHHhcCCe--eEEEEeccCCcccccccCCCCcccCChhHHHHHH
Q 010098 7 HIAIFTTAS-----------LPWLTGTAVNPLFRAAYLAKDGER--RVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYV 73 (518)
Q Consensus 7 rI~ivt~~~-----------~P~~~G~~~~~~~~a~~L~~~gg~--~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 73 (518)
+|++++... .|..+|.+.++..+++.|++.| | +|+|+|.......-...|... .. +.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~GG~~~~v~~La~~L~~~G-~~~~V~v~t~~~~~~~~~~~~~~~--~~--~~----- 71 (439)
T TIGR02472 2 YLLLLSLHGLIRGHDLELGRDADTGGQTKYVLELARALARRS-EVEQVDLVTRLIKDAKVSPDYAQP--IE--RI----- 71 (439)
T ss_pred eEEEEeCCcCCCCCccccCCCCCCCCcchHHHHHHHHHHhCC-CCcEEEEEeccccCcCCCCccCCC--ee--Ee-----
Confidence 566776444 4888999999999999999998 6 999999732110000001100 00 00
Q ss_pred HHhhhcccCCCCCCcccccCcccccccccc----cchhhHHhhcCCC--CCcEEEEcCCchhhhhhchHHHHhhcC-CEE
Q 010098 74 RWWLEDRTGFTSTFDTRFYPGKFAADKKSI----LAVGDITEIIPDE--EADIAVLEEPEHLTWFHHGKRWKAKFR-FVV 146 (518)
Q Consensus 74 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i----~~~~~l~~~i~~~--~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v 146 (518)
..-..-.++++.+.++....... .....+.+.+++. +|||||+|+... ++. +..+++..+ |+|
T Consensus 72 -------~~gv~v~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~DvIH~h~~~~-~~~--~~~~~~~~~~p~V 141 (439)
T TIGR02472 72 -------APGARIVRLPFGPRRYLRKELLWPYLDELADNLLQHLRQQGHLPDLIHAHYADA-GYV--GARLSRLLGVPLI 141 (439)
T ss_pred -------CCCcEEEEecCCCCCCcChhhhhhhHHHHHHHHHHHHHHcCCCCCEEEEcchhH-HHH--HHHHHHHhCCCEE
Confidence 00000011222221111100000 0113355555533 699999998643 333 444555555 999
Q ss_pred EEEeCChhhhhhhhc-c----hHHHHH--HHH--HHHHHHhhhhccEEEEeChhh-hc-------cC-CCceecccccCC
Q 010098 147 GIVHTNYLEYVKREK-N----DRLQAF--LLE--FVNSWLARVHCHKVIRLSAAT-QE-------YP-NSIVCNVHGVNP 208 (518)
Q Consensus 147 ~~~h~~~~~~~~~~~-~----~~~~~~--~~~--~~~~~~~~~~ad~vi~~S~~~-~~-------~~-~~~~~~~~GVd~ 208 (518)
.|.|+.......... . ...... +.. ...++..+ .+|.||++|... ++ ++ .+..++++|||+
T Consensus 142 ~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpnGvd~ 220 (439)
T TIGR02472 142 FTGHSLGREKRRRLLAAGLKPQQIEKQYNISRRIEAEEETLA-HASLVITSTHQEIEEQYALYDSYQPERMQVIPPGVDL 220 (439)
T ss_pred EecccccchhhhhcccCCCChhhhhhhcchHHHHHHHHHHHH-hCCEEEECCHHHHHHHHHhccCCCccceEEECCCcCh
Confidence 999964322111000 0 000000 000 01222333 389999998542 22 22 234456689999
Q ss_pred CCcCcchhhHH-------HhhcCCCCcccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEE-EEeCCCChH-------
Q 010098 209 KFLEIGEKKME-------QQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMD-LYGNGEDFD------- 273 (518)
Q Consensus 209 ~~~~~~~~~~~-------~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~-ivG~g~~~~------- 273 (518)
+.|.+...... .......++.++|+|+||+.+.||++.|++|+.++.....+.+++ ++|+|++.+
T Consensus 221 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~ 300 (439)
T TIGR02472 221 SRFYPPQSSEETSEIDNLLAPFLKDPEKPPILAISRPDRRKNIPSLVEAYGRSPKLQEMANLVLVLGCRDDIRKMESQQR 300 (439)
T ss_pred hhcCCCCccccchhHHHHHHhhccccCCcEEEEEcCCcccCCHHHHHHHHHhChhhhhhccEEEEeCCccccccccHHHH
Confidence 87765422110 112333445779999999999999999999998643222223443 568776532
Q ss_pred ----HHHHHHHHcCCe--EEEeCC--CCChHHHHhhc----CeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-ccccc
Q 010098 274 ----QIQRAAKKLKLV--VRVYPG--RDHADPIFHDY----KVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFK 340 (518)
Q Consensus 274 ----~l~~~~~~~~l~--v~~~~~--~~~~~~l~~~a----dv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~ 340 (518)
+++.+++++++. +.|.|. .+++.++|+.| |+||+||..|+||++++||||||+|||+|+.|+ .|++.
T Consensus 301 ~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~ 380 (439)
T TIGR02472 301 EVLQKVLLLIDRYDLYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGGPRDIIA 380 (439)
T ss_pred HHHHHHHHHHHHcCCCceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCCcHHHhc
Confidence 234556777765 556553 56777999977 999999999999999999999999999999998 99999
Q ss_pred cCCcEEeeC--CHHHHHHHHHHHHhCCCC--CCChHHH----hcCCHHHHHHHHHHHHH
Q 010098 341 QFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT----HQLSWESATERFLQVAE 391 (518)
Q Consensus 341 ~~~~g~~~~--d~~~l~~~i~~ll~~~~~--~l~~~~~----~~~sw~~~~~~~~~~y~ 391 (518)
++.+|++++ |+++++++|.++++|++. +|+++++ ++|||+.++++|+++.+
T Consensus 381 ~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~~ 439 (439)
T TIGR02472 381 NCRNGLLVDVLDLEAIASALEDALSDSSQWQLWSRNGIEGVRRHYSWDAHVEKYLRILQ 439 (439)
T ss_pred CCCcEEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 999999974 999999999999999876 7888876 78999999999998753
No 14
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=5.7e-34 Score=299.23 Aligned_cols=375 Identities=15% Similarity=0.176 Sum_probs=244.4
Q ss_pred cEEEEEeeccCCc--ccccccchHHHHHHHHhcCCeeEEEEeccCCccccccc------CCCCcccCChhHHHHHHHHhh
Q 010098 6 QHIAIFTTASLPW--LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQV------YPGNITFASPKEQEAYVRWWL 77 (518)
Q Consensus 6 ~rI~ivt~~~~P~--~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~------~p~~~~~~~~~~~~~~~~~~~ 77 (518)
|||+++|.-+.|+ .||.+.....++++|++.| |+|.|++|.+........ ....+.+.... ..++.|.
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G-~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 76 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALG-HDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRT---LYVKVFE 76 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcC-CeEEEEecCCcChhhhhccCeEEEEEEEEeecCce---eEEEEEE
Confidence 7999999998897 7888888899999999998 999999997643211100 00000000000 0000000
Q ss_pred ----hcccCCCCC---Ccc--cccCccc-ccccccccchhhHHhhcC--CCCCcEEEEcCCchhhhhhchHHHHhhc---
Q 010098 78 ----EDRTGFTST---FDT--RFYPGKF-AADKKSILAVGDITEIIP--DEEADIAVLEEPEHLTWFHHGKRWKAKF--- 142 (518)
Q Consensus 78 ----~~~~~~~~~---~~i--~~~~~~~-~~~~~~i~~~~~l~~~i~--~~~~Dvi~~~~~~~~~~~~~~~~~~~~~--- 142 (518)
...+.+... +.- ..|..-+ ....+.........++++ ..+|||||+|++... +. +..++...
T Consensus 77 ~~~~~v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~-~~--~~~l~~~~~~~ 153 (473)
T TIGR02095 77 GVVEGVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTA-LV--PALLKAVYRPN 153 (473)
T ss_pred EEECCceEEEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHH-HH--HHHHHhhccCC
Confidence 000000000 000 0111000 000111111122233332 368999999986544 22 23333332
Q ss_pred -CCEEEEEeCChhh-hhh-----hhcchHHHHHH---------HHHHHHHHhhhhccEEEEeChhhhcc-C---------
Q 010098 143 -RFVVGIVHTNYLE-YVK-----REKNDRLQAFL---------LEFVNSWLARVHCHKVIRLSAATQEY-P--------- 196 (518)
Q Consensus 143 -~~~v~~~h~~~~~-~~~-----~~~~~~~~~~~---------~~~~~~~~~~~~ad~vi~~S~~~~~~-~--------- 196 (518)
.|.|+|+|..... ... ..+... .... ...+...+ + +||.|+++|+..++. .
T Consensus 154 ~~~~v~TiH~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~-~-~ad~v~tVS~~~~~ei~~~~~~~~l~ 230 (473)
T TIGR02095 154 PIKTVFTIHNLAYQGVFPADDFSELGLPP-EYFHMEGLEFYGRVNFLKGGI-V-YADRVTTVSPTYAREILTPEFGYGLD 230 (473)
T ss_pred CCCEEEEcCCCccCCcCCHHHHHHcCCCh-HHcCchhhhcCCchHHHHHHH-H-hCCcCeecCHhHHHHhcCCcCCccch
Confidence 4899999965311 000 000000 0000 01111112 2 489999999765542 1
Q ss_pred -------CCceecccccCCCCcCcchh-------------------hHHHhhcCCCC--cccEEEEEEeecccCCHHHHH
Q 010098 197 -------NSIVCNVHGVNPKFLEIGEK-------------------KMEQQQNGNKA--FTKGAYYIGRMVWSKGYEELL 248 (518)
Q Consensus 197 -------~~~~~~~~GVd~~~~~~~~~-------------------~~~~~~~~~~~--~~~~il~vGr~~~~Kg~~~ll 248 (518)
.+...+.||||.+.|.|... ...++..+++. +.++|+|+||+.++||++.++
T Consensus 231 ~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li 310 (473)
T TIGR02095 231 GVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPLFGVISRLTQQKGVDLLL 310 (473)
T ss_pred hHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEecCccccChHHHH
Confidence 23445668999988775421 12334455543 678999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCC--hHHHHHHHHHcCCeEEEeCCCCC--hHHHHhhcCeeEecCCCCCCchHHHHHHHc
Q 010098 249 GLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLVVRVYPGRDH--ADPIFHDYKVFLNPSTTDVVCTATAEALAM 324 (518)
Q Consensus 249 ~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~~~l~v~~~~~~~~--~~~l~~~adv~v~pS~~E~~~~~~lEAma~ 324 (518)
+|+.++.+. +++|+|+|+|+. .+++++++++++.++.++++.++ ...+|+.||++++||..|+||++++|||+|
T Consensus 311 ~a~~~l~~~--~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~ 388 (473)
T TIGR02095 311 AALPELLEL--GGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAGADFILMPSRFEPCGLTQLYAMRY 388 (473)
T ss_pred HHHHHHHHc--CcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHC
Confidence 999999765 599999999953 56788888887766777776554 348999999999999999999999999999
Q ss_pred CCeEEeeCCCC-ccccccC------CcEEeeC--CHHHHHHHHHHHHh----CCCC--CCChHHH-hcCCHHHHHHHHHH
Q 010098 325 GKIVVCANHPS-NDFFKQF------PNCRTYD--GRNGFVEATLKALA----EEPA--QPTDAQT-HQLSWESATERFLQ 388 (518)
Q Consensus 325 G~PVV~t~~g~-~e~i~~~------~~g~~~~--d~~~l~~~i~~ll~----~~~~--~l~~~~~-~~~sw~~~~~~~~~ 388 (518)
|+|||+++.|| .|++.++ .+|++++ |+++++++|.++++ +++. +|++++. ++|||++++++|++
T Consensus 389 G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~ 468 (473)
T TIGR02095 389 GTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQDPSLWEALQKNAMSQDFSWDKSAKQYVE 468 (473)
T ss_pred CCCeEEccCCCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 99999999998 9999988 8999974 99999999999887 6654 7777776 78999999999999
Q ss_pred HHHh
Q 010098 389 VAEL 392 (518)
Q Consensus 389 ~y~~ 392 (518)
+|+.
T Consensus 469 ~Y~~ 472 (473)
T TIGR02095 469 LYRS 472 (473)
T ss_pred HHHh
Confidence 9984
No 15
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-34 Score=271.25 Aligned_cols=348 Identities=17% Similarity=0.180 Sum_probs=248.0
Q ss_pred cEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCccccccc-CC-CCcccCChhHHHHHHHHhhhcccCC
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQV-YP-GNITFASPKEQEAYVRWWLEDRTGF 83 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~-~p-~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (518)
.+||++++.|+|..+|+..+++.+++.|.+.| |.|.+++..+.+. ..+ |- ++......+. .+.+
T Consensus 1 ~~i~mVsdff~P~~ggveshiy~lSq~li~lg-hkVvvithayg~r--~girylt~glkVyylp~-----------~v~~ 66 (426)
T KOG1111|consen 1 SRILMVSDFFYPSTGGVESHIYALSQCLIRLG-HKVVVITHAYGNR--VGIRYLTNGLKVYYLPA-----------VVGY 66 (426)
T ss_pred CcceeeCcccccCCCChhhhHHHhhcchhhcC-CeEEEEeccccCc--cceeeecCCceEEEEee-----------eeee
Confidence 47999999999999999999999999999999 9999998855321 100 10 1100000000 0000
Q ss_pred CCCCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcc
Q 010098 84 TSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKN 162 (518)
Q Consensus 84 ~~~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~ 162 (518)
+-.-.|. -... ++-++..+.+++..++|.|++++. +.+.+...++-.+ +.++|-|+.|..-.
T Consensus 67 ----n~tT~pt----v~~~---~Pllr~i~lrE~I~ivhghs~fS~-lahe~l~hartMGlktVfTdHSlfGfad----- 129 (426)
T KOG1111|consen 67 ----NQTTFPT----VFSD---FPLLRPILLRERIEIVHGHSPFSY-LAHEALMHARTMGLKTVFTDHSLFGFAD----- 129 (426)
T ss_pred ----cccchhh----hhcc---CcccchhhhhhceEEEecCChHHH-HHHHHHHHHHhcCceEEEeccccccccc-----
Confidence 0000010 0000 223667777789999999998765 2223333455555 88999997654321
Q ss_pred hHHHHHHHHHHHH-HHhhhhccEEEEeChhhhcc--------CCCceecccccCCCCcCcchhhHHHhhcCCCCcccEEE
Q 010098 163 DRLQAFLLEFVNS-WLARVHCHKVIRLSAATQEY--------PNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAY 233 (518)
Q Consensus 163 ~~~~~~~~~~~~~-~~~~~~ad~vi~~S~~~~~~--------~~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il 233 (518)
+.+.+...+.. -+. ..|.+||+|...++- +.+..++++.++...|.|.... ....+...|+
T Consensus 130 --~~si~~n~ll~~sL~--~id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~------~~S~~i~~iv 199 (426)
T KOG1111|consen 130 --IGSILTNKLLPLSLA--NIDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPDAAD------KPSADIITIV 199 (426)
T ss_pred --hhhhhhcceeeeeec--CCCcEEEEeecCCCceEEEeccCHhHeeeccceeeccccccCccc------cCCCCeeEEE
Confidence 11112221111 111 369999999877771 3455666778888888774332 1122247899
Q ss_pred EEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCe--EEEeCC--CCChHHHHhhcCeeEecC
Q 010098 234 YIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPG--RDHADPIFHDYKVFLNPS 309 (518)
Q Consensus 234 ~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~--v~~~~~--~~~~~~l~~~adv~v~pS 309 (518)
.++|+.++||+|.++++++++.+++|+++++|+|+||.+..+++..+++.+. +.+.|. .+++.+.|..-|+|++||
T Consensus 200 v~sRLvyrKGiDll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntS 279 (426)
T KOG1111|consen 200 VASRLVYRKGIDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTS 279 (426)
T ss_pred EEeeeeeccchHHHHHHHHHHHhcCCCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccH
Confidence 9999999999999999999999999999999999999998888888888776 667774 556669999999999999
Q ss_pred CCCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEee-CCHHHHHHHHHHHHhCCCC---CCChHHHhcCCHHHHHH
Q 010098 310 TTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTY-DGRNGFVEATLKALAEEPA---QPTDAQTHQLSWESATE 384 (518)
Q Consensus 310 ~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~-~d~~~l~~~i~~ll~~~~~---~l~~~~~~~~sw~~~~~ 384 (518)
.+|.||++++|||+||+|||+|+.|| +|++.++ .-... .++++++++++++++.-.. ++-+.-.+.|+|+++++
T Consensus 280 lTEafc~~ivEAaScGL~VVsTrVGGIpeVLP~d-~i~~~~~~~~dl~~~v~~ai~~~~~~p~~~h~~v~~~y~w~dVa~ 358 (426)
T KOG1111|consen 280 LTEAFCMVIVEAASCGLPVVSTRVGGIPEVLPED-MITLGEPGPDDLVGAVEKAITKLRTLPLEFHDRVKKMYSWKDVAE 358 (426)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeecCCccccCCcc-ceeccCCChHHHHHHHHHHHHHhccCchhHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999 9999664 22222 4889999999998876554 33344448999999999
Q ss_pred HHHHHHHhcCC
Q 010098 385 RFLQVAELVGD 395 (518)
Q Consensus 385 ~~~~~y~~~~~ 395 (518)
+.+++|..+..
T Consensus 359 rTekvy~r~~~ 369 (426)
T KOG1111|consen 359 RTEKVYDRAAT 369 (426)
T ss_pred HHHHHHHHHhh
Confidence 99999997764
No 16
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=7.3e-34 Score=291.36 Aligned_cols=350 Identities=15% Similarity=0.125 Sum_probs=235.2
Q ss_pred cEEEEEeeccCCcc-cccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCC
Q 010098 6 QHIAIFTTASLPWL-TGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFT 84 (518)
Q Consensus 6 ~rI~ivt~~~~P~~-~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (518)
|||+++++.|+|.. +|++.+...+++.|.+. ++|+|++....... . +++..... +.|
T Consensus 1 mkI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~--~~v~v~~~~~~~~~----~-~~~~~~~~-------~~~-------- 58 (388)
T TIGR02149 1 MKVTVLTREYPPNVYGGAGVHVEELTRELARL--MDVDVRCFGDQRFD----S-EGLTVKGY-------RPW-------- 58 (388)
T ss_pred CeeEEEecccCccccccHhHHHHHHHHHHHHh--cCeeEEcCCCchhc----C-CCeEEEEe-------cCh--------
Confidence 78999999999886 88888999999999874 56777765211000 0 01000000 000
Q ss_pred CCCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhc-c
Q 010098 85 STFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREK-N 162 (518)
Q Consensus 85 ~~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~-~ 162 (518)
... ......... ...++.......++|+||+|..... +. +....+..+ |++.+.|+..+....... .
T Consensus 59 --~~~----~~~~~~~~~--~~~~~~~~~~~~~~divh~~~~~~~-~~--~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~ 127 (388)
T TIGR02149 59 --SEL----KEANKALGT--FSVDLAMANDPVDADVVHSHTWYTF-LA--GHLAKKLYDKPLVVTAHSLEPLRPWKEEQL 127 (388)
T ss_pred --hhc----cchhhhhhh--hhHHHHHhhCCCCCCeEeecchhhh-hH--HHHHHHhcCCCEEEEeeccccccccccccc
Confidence 000 000000000 0111222233457999999986543 22 222223334 899999976432111000 0
Q ss_pred hHHHHHHHHHHHHHHhhhhccEEEEeChhhhcc--------C-CCceecccccCCCCcCcchhhHHHhhcCCCCcccEEE
Q 010098 163 DRLQAFLLEFVNSWLARVHCHKVIRLSAATQEY--------P-NSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAY 233 (518)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~--------~-~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il 233 (518)
+. ...+...+.+...+ .+|.++++|+.+++. . .+..+..+|+|+..+.+......+...+.+.+.++++
T Consensus 128 ~~-~~~~~~~~~~~~~~-~ad~vi~~S~~~~~~~~~~~~~~~~~~i~vi~ng~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 205 (388)
T TIGR02149 128 GG-GYKLSSWAEKTAIE-AADRVIAVSGGMREDILKYYPDLDPEKVHVIYNGIDTKEYKPDDGNVVLDRYGIDRSRPYIL 205 (388)
T ss_pred cc-chhHHHHHHHHHHh-hCCEEEEccHHHHHHHHHHcCCCCcceEEEecCCCChhhcCCCchHHHHHHhCCCCCceEEE
Confidence 00 00122223333333 389999999877652 1 1223455799988777654444455666666678999
Q ss_pred EEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCh----HHHHHHHHHcCC---eEEEeCC---CCChHHHHhhcC
Q 010098 234 YIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDF----DQIQRAAKKLKL---VVRVYPG---RDHADPIFHDYK 303 (518)
Q Consensus 234 ~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~----~~l~~~~~~~~l---~v~~~~~---~~~~~~l~~~ad 303 (518)
|+||+.+.||++.+++++.++. ++++++++|+|++. +.+++.++.++. .+.++++ .+++.++|+.||
T Consensus 206 ~~Grl~~~Kg~~~li~a~~~l~---~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aD 282 (388)
T TIGR02149 206 FVGRITRQKGVPHLLDAVHYIP---KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAE 282 (388)
T ss_pred EEcccccccCHHHHHHHHHHHh---hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCC
Confidence 9999999999999999998875 36889999887653 455666666654 2555543 456679999999
Q ss_pred eeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC--CH------HHHHHHHHHHHhCCCC--CCChH
Q 010098 304 VFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GR------NGFVEATLKALAEEPA--QPTDA 372 (518)
Q Consensus 304 v~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~--d~------~~l~~~i~~ll~~~~~--~l~~~ 372 (518)
++|+||..|++|++++|||+||+|||+|+.|+ .|++.++.+|++++ |+ ++++++|.++++|++. +|+++
T Consensus 283 v~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~ 362 (388)
T TIGR02149 283 VFVCPSIYEPLGIVNLEAMACGTPVVASATGGIPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLADPELAKKMGIA 362 (388)
T ss_pred EEEeCCccCCCChHHHHHHHcCCCEEEeCCCCHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 99999999999999999999999999999998 99999999999974 66 8999999999998875 78777
Q ss_pred HH----hcCCHHHHHHHHHHHHHhc
Q 010098 373 QT----HQLSWESATERFLQVAELV 393 (518)
Q Consensus 373 ~~----~~~sw~~~~~~~~~~y~~~ 393 (518)
++ ++|||+.+++++.++|+..
T Consensus 363 a~~~~~~~~s~~~~~~~~~~~y~~~ 387 (388)
T TIGR02149 363 GRKRAEEEFSWGSIAKKTVEMYRKV 387 (388)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 76 7899999999999999853
No 17
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=3.6e-33 Score=284.58 Aligned_cols=344 Identities=11% Similarity=0.012 Sum_probs=232.4
Q ss_pred EEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCCC
Q 010098 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 86 (518)
Q Consensus 7 rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (518)
||+++++.+ ..+|++.....++++|.+.| |+|+++++... +. .| ... ..+... . ..
T Consensus 1 ki~~~~~~~--~~GGv~~~~~~l~~~l~~~g-~~v~~~~~~~~--~~--~~---------~~~-~~~~~~----~---~g 56 (372)
T cd03792 1 KVLHVNSTP--YGGGVAEILHSLVPLMRDLG-VDTRWEVIKGD--PE--FF---------NVT-KKFHNA----L---QG 56 (372)
T ss_pred CeEEEeCCC--CCCcHHHHHHHHHHHHHHcC-CCceEEecCCC--hh--HH---------HHH-HHhhHh----h---cC
Confidence 689999876 55888888889999999998 99999987210 00 00 000 000000 0 00
Q ss_pred CcccccCcccccccccccchh-hHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhh-cCCEEEEEeCChhhhhhhhcchH
Q 010098 87 FDTRFYPGKFAADKKSILAVG-DITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAK-FRFVVGIVHTNYLEYVKREKNDR 164 (518)
Q Consensus 87 ~~i~~~~~~~~~~~~~i~~~~-~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~-~~~~v~~~h~~~~~~~~~~~~~~ 164 (518)
..+.. +..+...... .+. .+...+...+||+||+|++....+. . +.+. ..|+|.+.|+....+.
T Consensus 57 ~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~Dvv~~h~~~~~~~~---~-~~~~~~~~~i~~~H~~~~~~~------- 122 (372)
T cd03792 57 ADIEL-SEEEKEIYLE--WNEENAERPLLDLDADVVVIHDPQPLALP---L-FKKKRGRPWIWRCHIDLSSPN------- 122 (372)
T ss_pred CCCCC-CHHHHHHHHH--HHHHHhccccccCCCCEEEECCCCchhHH---H-hhhcCCCeEEEEeeeecCCCc-------
Confidence 01100 1110000000 000 0111344678999999988744221 1 2222 2388899997653221
Q ss_pred HHHHHHHHHHHHHhhhhccEEEEeChhh-hc-cCCCceecccccCCCC-c----CcchhhHHHhhcCCCCcccEEEEEEe
Q 010098 165 LQAFLLEFVNSWLARVHCHKVIRLSAAT-QE-YPNSIVCNVHGVNPKF-L----EIGEKKMEQQQNGNKAFTKGAYYIGR 237 (518)
Q Consensus 165 ~~~~~~~~~~~~~~~~~ad~vi~~S~~~-~~-~~~~~~~~~~GVd~~~-~----~~~~~~~~~~~~~~~~~~~~il~vGr 237 (518)
...++.+.+.+.+ +|.+++.|... .. +..+..+.++|||+.. + .+......+...+.+++.++++++||
T Consensus 123 --~~~~~~~~~~~~~--~d~~i~~~~~~~~~~~~~~~~vipngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vgr 198 (372)
T cd03792 123 --RRVWDFLQPYIED--YDAAVFHLPEYVPPQVPPRKVIIPPSIDPLSGKNRELSPADIEYILEKYGIDPERPYITQVSR 198 (372)
T ss_pred --HHHHHHHHHHHHh--CCEEeecHHHhcCCCCCCceEEeCCCCCCCccccCCCCHHHHHHHHHHhCCCCCCcEEEEEec
Confidence 1122333344444 58888888332 22 2333345567998742 1 11122233445666677899999999
Q ss_pred ecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCh-----HHHHHHHHHcCC--eEEEeCCC----CChHHHHhhcCeeE
Q 010098 238 MVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDF-----DQIQRAAKKLKL--VVRVYPGR----DHADPIFHDYKVFL 306 (518)
Q Consensus 238 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~-----~~l~~~~~~~~l--~v~~~~~~----~~~~~l~~~adv~v 306 (518)
+.+.||++.+++++..+.+..++++|+++|+|+.. +.++++.+..++ .+.+++.. +++.++|+.+|+|+
T Consensus 199 l~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v 278 (372)
T cd03792 199 FDPWKDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVL 278 (372)
T ss_pred cccccCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEE
Confidence 99999999999999999888789999999998642 234444444444 36666644 45559999999999
Q ss_pred ecCCCCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeCCHHHHHHHHHHHHhCCCC--CCChHHH----hcCCH
Q 010098 307 NPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQT----HQLSW 379 (518)
Q Consensus 307 ~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~~~--~l~~~~~----~~~sw 379 (518)
+||..|+||++++||||||+|||+++.++ .+++.++.+|++++++++++++|.+++++++. .|+++++ ++|||
T Consensus 279 ~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~~~~~i~~~~~g~~~~~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~ 358 (372)
T cd03792 279 QKSIREGFGLTVTEALWKGKPVIAGPVGGIPLQIEDGETGFLVDTVEEAAVRILYLLRDPELRRKMGANAREHVRENFLI 358 (372)
T ss_pred eCCCccCCCHHHHHHHHcCCCEEEcCCCCchhhcccCCceEEeCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCH
Confidence 99999999999999999999999999988 99999999999999999999999999998775 7877776 68999
Q ss_pred HHHHHHHHHHHHh
Q 010098 380 ESATERFLQVAEL 392 (518)
Q Consensus 380 ~~~~~~~~~~y~~ 392 (518)
+.++++++++|+.
T Consensus 359 ~~~~~~~~~~~~~ 371 (372)
T cd03792 359 TRHLKDYLYLISK 371 (372)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999984
No 18
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.7e-33 Score=300.55 Aligned_cols=384 Identities=16% Similarity=0.141 Sum_probs=244.5
Q ss_pred cccEEEEEeeccCCc--ccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCC-C--CcccCC-hhHHHHHHHHhh
Q 010098 4 KQQHIAIFTTASLPW--LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYP-G--NITFAS-PKEQEAYVRWWL 77 (518)
Q Consensus 4 ~~~rI~ivt~~~~P~--~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p-~--~~~~~~-~~~~~~~~~~~~ 77 (518)
++|||++|+.-..|+ .||-+-....+..+|++.| |+|.|++|.|.......+.. . ...+.. ........+.|.
T Consensus 480 ~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~G-hdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ 558 (977)
T PLN02939 480 SGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKG-HLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWT 558 (977)
T ss_pred CCCEEEEEEcccccccccccHHHHHHHHHHHHHHcC-CeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEEE
Confidence 569999999999897 4777777788889999998 99999999775322110000 0 000000 000000000000
Q ss_pred h----cccCCCC-CCc-ccccCcc-c---ccccccccchhhHHhhcC--CCCCcEEEEcCCchhhhhhchHHHHh-----
Q 010098 78 E----DRTGFTS-TFD-TRFYPGK-F---AADKKSILAVGDITEIIP--DEEADIAVLEEPEHLTWFHHGKRWKA----- 140 (518)
Q Consensus 78 ~----~~~~~~~-~~~-i~~~~~~-~---~~~~~~i~~~~~l~~~i~--~~~~Dvi~~~~~~~~~~~~~~~~~~~----- 140 (518)
. ..+.+.. ... ..|.... | ....+..+..+...+++. ..+|||||+|++...... ..+..
T Consensus 559 ~~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~---pll~~~y~~~ 635 (977)
T PLN02939 559 GTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVA---PLYWDLYAPK 635 (977)
T ss_pred EEECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHH---HHHHHHHhhc
Confidence 0 0001100 000 0010000 1 011111111222333443 368999999998765211 11111
Q ss_pred hcC--CEEEEEeCC-hhhh-----hhhhcchH--H--HHHH----HHHHHHHHhhh--hccEEEEeChhhhcc-------
Q 010098 141 KFR--FVVGIVHTN-YLEY-----VKREKNDR--L--QAFL----LEFVNSWLARV--HCHKVIRLSAATQEY------- 195 (518)
Q Consensus 141 ~~~--~~v~~~h~~-~~~~-----~~~~~~~~--~--~~~~----~~~~~~~~~~~--~ad~vi~~S~~~~~~------- 195 (518)
.+. +.|+|+|.. |... ....+... + ...+ ...+ +++... +||.|+++|+..++-
T Consensus 636 ~~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~i-N~LK~GIv~AD~VtTVSptYA~EI~te~G~ 714 (977)
T PLN02939 636 GFNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNAHGRI-NVVKGAIVYSNIVTTVSPTYAQEVRSEGGR 714 (977)
T ss_pred cCCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhccCCch-HHHHHHHHhCCeeEeeeHHHHHHHHHHhcc
Confidence 122 799999955 1110 00000000 0 0000 0111 111211 589999999766542
Q ss_pred ---------CCCceecccccCCCCcCcchh-------------------hHHHhhcCCCC---cccEEEEEEeecccCCH
Q 010098 196 ---------PNSIVCNVHGVNPKFLEIGEK-------------------KMEQQQNGNKA---FTKGAYYIGRMVWSKGY 244 (518)
Q Consensus 196 ---------~~~~~~~~~GVd~~~~~~~~~-------------------~~~~~~~~~~~---~~~~il~vGr~~~~Kg~ 244 (518)
..+...++||||++.|.|... ...+...+++. +.++|+|+||+.++||+
T Consensus 715 GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKGi 794 (977)
T PLN02939 715 GLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVPQKGV 794 (977)
T ss_pred chHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeecCCcccCh
Confidence 123356678999988776532 22344566653 46899999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCCh---HHHHHHHHHcCCe--EEEeCCCCChH--HHHhhcCeeEecCCCCCCchH
Q 010098 245 EELLGLLNIYHKELAGLEMDLYGNGEDF---DQIQRAAKKLKLV--VRVYPGRDHAD--PIFHDYKVFLNPSTTDVVCTA 317 (518)
Q Consensus 245 ~~ll~a~~~l~~~~~~~~l~ivG~g~~~---~~l~~~~~~~~l~--v~~~~~~~~~~--~l~~~adv~v~pS~~E~~~~~ 317 (518)
+.+++|+.++.. ++++|+|+|+|++. +.++.+++++++. +.+.+.+++.. .+|+.+|+||+||.+|+||++
T Consensus 795 DlLleA~~~Ll~--~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADIFLmPSr~EPfGLv 872 (977)
T PLN02939 795 HLIRHAIYKTAE--LGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASDMFIIPSMFEPCGLT 872 (977)
T ss_pred HHHHHHHHHHhh--cCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCEEEECCCccCCcHH
Confidence 999999988864 37999999999763 6788888888764 67778777654 799999999999999999999
Q ss_pred HHHHHHcCCeEEeeCCCC-cccccc---------CCcEEeeC--CHHHHHHHHHHHHh----CCCC--CCChHHH-hcCC
Q 010098 318 TAEALAMGKIVVCANHPS-NDFFKQ---------FPNCRTYD--GRNGFVEATLKALA----EEPA--QPTDAQT-HQLS 378 (518)
Q Consensus 318 ~lEAma~G~PVV~t~~g~-~e~i~~---------~~~g~~~~--d~~~l~~~i~~ll~----~~~~--~l~~~~~-~~~s 378 (518)
++|||+||+|+|+++.|| .|.|.+ +.+|++++ |+++++++|.++++ |++. +|++++. +.||
T Consensus 873 qLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~dpe~~~~L~~~am~~dFS 952 (977)
T PLN02939 873 QMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYKRKPEVWKQLVQKDMNIDFS 952 (977)
T ss_pred HHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCC
Confidence 999999999999999998 888765 57899974 99999999998875 4443 6666655 7899
Q ss_pred HHHHHHHHHHHHHhcC
Q 010098 379 WESATERFLQVAELVG 394 (518)
Q Consensus 379 w~~~~~~~~~~y~~~~ 394 (518)
|+.++++|.++|+...
T Consensus 953 We~~A~qYeeLY~~ll 968 (977)
T PLN02939 953 WDSSASQYEELYQRAV 968 (977)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999664
No 19
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=4.5e-33 Score=296.39 Aligned_cols=273 Identities=11% Similarity=0.082 Sum_probs=194.4
Q ss_pred CCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchH--HHHH--HHHHHH-HHHhhhhccEEEEeC
Q 010098 116 EEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDR--LQAF--LLEFVN-SWLARVHCHKVIRLS 189 (518)
Q Consensus 116 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~--~~~~--~~~~~~-~~~~~~~ad~vi~~S 189 (518)
.+||+||+|++... ..|..++++++ |.+.|.|+............. .... +...+. .......||.||+.|
T Consensus 384 ~~pDlIHahy~d~g---lva~lla~~lgVP~v~t~HsL~~~K~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~AD~IItsT 460 (784)
T TIGR02470 384 GKPDLIIGNYSDGN---LVASLLARKLGVTQCTIAHALEKTKYPDSDIYWQEFEDKYHFSCQFTADLIAMNAADFIITST 460 (784)
T ss_pred CCCCEEEECCCchH---HHHHHHHHhcCCCEEEECCcchhhcccccccccccchhHHHhhhhhhHHHHHHhcCCEEEECc
Confidence 46999999998776 33666888887 999999977332211111000 0001 111110 112222489999999
Q ss_pred hhhh--------cc--------------------C-CCceecccccCCCCcCcchhhHH-------------------Hh
Q 010098 190 AATQ--------EY--------------------P-NSIVCNVHGVNPKFLEIGEKKME-------------------QQ 221 (518)
Q Consensus 190 ~~~~--------~~--------------------~-~~~~~~~~GVd~~~~~~~~~~~~-------------------~~ 221 (518)
.... +| . .+..++.+|+|+..|.|...... +.
T Consensus 461 ~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~ 540 (784)
T TIGR02470 461 YQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDE 540 (784)
T ss_pred HHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHH
Confidence 5321 11 1 22234456999876655432211 12
Q ss_pred hcCC--CCcccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC------------hHHHHHHHHHcCCe--
Q 010098 222 QNGN--KAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED------------FDQIQRAAKKLKLV-- 285 (518)
Q Consensus 222 ~~~~--~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~------------~~~l~~~~~~~~l~-- 285 (518)
..+. ++++++|+++||+.+.||++.|++|+.++....++++|+|+|++.+ .+++.++++++++.
T Consensus 541 ~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~ 620 (784)
T TIGR02470 541 HYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQ 620 (784)
T ss_pred HhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCe
Confidence 2332 4567899999999999999999999988866566799999998652 14566788888876
Q ss_pred EEEeCCC---CChHHHHhh----cCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC--CHHHHH
Q 010098 286 VRVYPGR---DHADPIFHD----YKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFV 355 (518)
Q Consensus 286 v~~~~~~---~~~~~l~~~----adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~ 355 (518)
+.+.|.. .+..++|+. +|+||+||++|+||++++||||||+|||+|+.|| .|++.++.+|++++ |+++++
T Consensus 621 V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG~~EiV~dg~tGfLVdp~D~eaLA 700 (784)
T TIGR02470 621 IRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGGPLEIIQDGVSGFHIDPYHGEEAA 700 (784)
T ss_pred EEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHH
Confidence 5566643 345567752 4699999999999999999999999999999999 99999999999985 999999
Q ss_pred HHHHHHH----hCCCC--CCChHHH----hcCCHHHHHHHHHHHHH
Q 010098 356 EATLKAL----AEEPA--QPTDAQT----HQLSWESATERFLQVAE 391 (518)
Q Consensus 356 ~~i~~ll----~~~~~--~l~~~~~----~~~sw~~~~~~~~~~y~ 391 (518)
++|.+++ +|++. +|+++++ ++|||+.++++++++..
T Consensus 701 ~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~~ 746 (784)
T TIGR02470 701 EKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSERLLTLAG 746 (784)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 9999886 45554 7888776 78999999999998875
No 20
>PLN02316 synthase/transferase
Probab=100.00 E-value=3.1e-33 Score=303.96 Aligned_cols=365 Identities=15% Similarity=0.131 Sum_probs=239.4
Q ss_pred cccEEEEEeeccCCc--ccccccchHHHHHHHHhcCCeeEEEEeccCCccccccc--CCCCcccCChhHHHHHHHHhhh-
Q 010098 4 KQQHIAIFTTASLPW--LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQV--YPGNITFASPKEQEAYVRWWLE- 78 (518)
Q Consensus 4 ~~~rI~ivt~~~~P~--~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~- 78 (518)
.+|||++|+.-+.|. .||.+.....++++|++.| |+|.|++|.+........ .+....+.- .. ..++.|..
T Consensus 586 ~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~G-h~V~VitP~Y~~i~~~~~~~~~~~~~~~~-~~--~~~~v~~~~ 661 (1036)
T PLN02316 586 PPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLN-HNVDIILPKYDCLNLSHVKDLHYQRSYSW-GG--TEIKVWFGK 661 (1036)
T ss_pred CCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcC-CEEEEEecCCcccchhhcccceEEEEecc-CC--EEEEEEEEE
Confidence 459999999999895 5888888889999999998 999999997643111000 000000000 00 00000000
Q ss_pred ---cccCCCCCCcccccCc--cc---ccccccccchhhHHhhcC--CCCCcEEEEcCCchhhhhhchHHHHhh-----c-
Q 010098 79 ---DRTGFTSTFDTRFYPG--KF---AADKKSILAVGDITEIIP--DEEADIAVLEEPEHLTWFHHGKRWKAK-----F- 142 (518)
Q Consensus 79 ---~~~~~~~~~~i~~~~~--~~---~~~~~~i~~~~~l~~~i~--~~~~Dvi~~~~~~~~~~~~~~~~~~~~-----~- 142 (518)
..+.+..... .+|.. -| ....+..+......+++. ..+|||||+|+.... +. +..++.. +
T Consensus 662 ~~GV~vyfl~~~~-~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~ta-lv--a~llk~~~~~~~~~ 737 (1036)
T PLN02316 662 VEGLSVYFLEPQN-GMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSA-PV--AWLFKDHYAHYGLS 737 (1036)
T ss_pred ECCcEEEEEeccc-cccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHH-HH--HHHHHHhhhhhccC
Confidence 0000000000 00000 00 001111111112223332 357999999987543 22 2223221 1
Q ss_pred -CCEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEEEEeChhhhc-c------C---CCceecccccCCCCc
Q 010098 143 -RFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQE-Y------P---NSIVCNVHGVNPKFL 211 (518)
Q Consensus 143 -~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~-~------~---~~~~~~~~GVd~~~~ 211 (518)
.|+|+|+|... +.. ..+...+. +||.|+++|+..++ + . .+...+++|||++.|
T Consensus 738 ~~p~V~TiHnl~--~~~------------n~lk~~l~--~AD~ViTVS~tya~EI~~~~~l~~~~~Kl~vI~NGID~~~w 801 (1036)
T PLN02316 738 KARVVFTIHNLE--FGA------------NHIGKAMA--YADKATTVSPTYSREVSGNSAIAPHLYKFHGILNGIDPDIW 801 (1036)
T ss_pred CCCEEEEeCCcc--cch------------hHHHHHHH--HCCEEEeCCHHHHHHHHhccCcccccCCEEEEECCcccccc
Confidence 28999999432 110 01112222 37999999977654 1 1 234566689999876
Q ss_pred Ccchh--------------------hHHHhhcCCC-CcccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 010098 212 EIGEK--------------------KMEQQQNGNK-AFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGE 270 (518)
Q Consensus 212 ~~~~~--------------------~~~~~~~~~~-~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~ 270 (518)
.|... ...+...+++ .+.++|+|+||+.++||++.|++|+.++.+. +++|+|+|+|+
T Consensus 802 ~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~~--~~qlVIvG~Gp 879 (1036)
T PLN02316 802 DPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLER--NGQVVLLGSAP 879 (1036)
T ss_pred CCcccccccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhhc--CcEEEEEeCCC
Confidence 55321 1123445665 3578999999999999999999999988753 79999999997
Q ss_pred C---hHHHHHHHHHcCC----eEEEeCCCCChH--HHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-ccccc
Q 010098 271 D---FDQIQRAAKKLKL----VVRVYPGRDHAD--PIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFK 340 (518)
Q Consensus 271 ~---~~~l~~~~~~~~l----~v~~~~~~~~~~--~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~ 340 (518)
+ .+.++++++++++ .+.+++++++.. .+|+.||+||+||.+|+||++.+|||+||+|+|++++|| .|.|.
T Consensus 880 d~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~ 959 (1036)
T PLN02316 880 DPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVF 959 (1036)
T ss_pred CHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhcc
Confidence 6 3678888887765 366777776653 799999999999999999999999999999999999999 89887
Q ss_pred cC-------------CcEEeeC--CHHHHHHHHHHHHhCC-CC--CCChHHH----hcCCHHHHHHHHHHHHHhcC
Q 010098 341 QF-------------PNCRTYD--GRNGFVEATLKALAEE-PA--QPTDAQT----HQLSWESATERFLQVAELVG 394 (518)
Q Consensus 341 ~~-------------~~g~~~~--d~~~l~~~i~~ll~~~-~~--~l~~~~~----~~~sw~~~~~~~~~~y~~~~ 394 (518)
++ .+|++++ |+++++.+|.+++.+. +. .++..++ +.|||+.++++|+++|+.+.
T Consensus 960 d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~a~ 1035 (1036)
T PLN02316 960 DVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHSAR 1035 (1036)
T ss_pred ccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHh
Confidence 74 6899985 9999999999999874 22 4444444 78999999999999998653
No 21
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=100.00 E-value=2e-32 Score=277.15 Aligned_cols=352 Identities=22% Similarity=0.248 Sum_probs=247.3
Q ss_pred EEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCCC
Q 010098 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 86 (518)
Q Consensus 7 rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (518)
||+++++.|+|..+|.+.....++++|.+.| |+|+++++........... .. ...+ ....
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g-~~v~v~~~~~~~~~~~~~~---------~~----~~~~---~~~~--- 60 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRG-HEVYVVAPSYPGAPEEEEV---------VV----VRPF---RVPT--- 60 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcC-CeEEEEeCCCCCCCccccc---------cc----cccc---cccc---
Confidence 6999999999999999999999999999998 9999998843211110000 00 0000 0000
Q ss_pred CcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHH
Q 010098 87 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRL 165 (518)
Q Consensus 87 ~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~ 165 (518)
.. ..+. .........+...+++.+||+||++++...... +..++++.+ |++.++|+.+..+.........
T Consensus 61 ---~~-~~~~---~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 131 (374)
T cd03817 61 ---FK-YPDF---RLPLPIPRALIIILKELGPDIVHTHTPFSLGLL--GLRVARKLGIPVVATYHTMYEDYTHYVPLGRL 131 (374)
T ss_pred ---ch-hhhh---hccccHHHHHHHHHhhcCCCEEEECCchhhhhH--HHHHHHHcCCCEEEEecCCHHHHHHHHhcccc
Confidence 00 0000 000001233555677889999999988665433 444555555 8999999887655443322111
Q ss_pred -HHHHHH-HHHHHHhhhhccEEEEeChhhhccC------CCceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEe
Q 010098 166 -QAFLLE-FVNSWLARVHCHKVIRLSAATQEYP------NSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGR 237 (518)
Q Consensus 166 -~~~~~~-~~~~~~~~~~ad~vi~~S~~~~~~~------~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr 237 (518)
...... ...+...+ .||.+++.|+..++.. .+..+..+|+|...+.+......+.......+.+.++|+|+
T Consensus 132 ~~~~~~~~~~~~~~~~-~~d~i~~~s~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~ 210 (374)
T cd03817 132 LARAVVRRKLSRRFYN-RCDAVIAPSEKIADLLREYGVKRPIEVIPTGIDLDRFEPVDGDDERRKLGIPEDEPVLLYVGR 210 (374)
T ss_pred hhHHHHHHHHHHHHhh-hCCEEEeccHHHHHHHHhcCCCCceEEcCCccchhccCccchhHHHHhcCCCCCCeEEEEEee
Confidence 111111 22233333 3899999998776632 22344456888877665443333334444556788999999
Q ss_pred ecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCe--EEEeCCC--CChHHHHhhcCeeEecCCCCC
Q 010098 238 MVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGR--DHADPIFHDYKVFLNPSTTDV 313 (518)
Q Consensus 238 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~--v~~~~~~--~~~~~l~~~adv~v~pS~~E~ 313 (518)
+.+.||++.+++++.++.++.++++++++|+|+..+.+++.++++++. +.+.|.. +++.++|+.||++++||..|+
T Consensus 211 ~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~ 290 (374)
T cd03817 211 LAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTET 290 (374)
T ss_pred eecccCHHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccC
Confidence 999999999999999998887899999999999888899988877764 5566654 566699999999999999999
Q ss_pred CchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC-CHHHHHHHHHHHHhCCCC--CCChHHH---hcCCHHHHHHHH
Q 010098 314 VCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD-GRNGFVEATLKALAEEPA--QPTDAQT---HQLSWESATERF 386 (518)
Q Consensus 314 ~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~-d~~~l~~~i~~ll~~~~~--~l~~~~~---~~~sw~~~~~~~ 386 (518)
+|++++|||+||+|||+++.++ .|++.++.+|++++ +.++++++|.+++++++. +|+++++ ++++ ..+++
T Consensus 291 ~~~~~~Ea~~~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 367 (374)
T cd03817 291 QGLVLLEAMAAGLPVVAVDAPGLPDLVADGENGFLFPPGDEALAEALLRLLQDPELRRRLSKNAEESAEKFS---FAKKV 367 (374)
T ss_pred cChHHHHHHHcCCcEEEeCCCChhhheecCceeEEeCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 9999999999999999999998 99999999999985 222999999999999886 7777777 3343 45566
Q ss_pred HHHHH
Q 010098 387 LQVAE 391 (518)
Q Consensus 387 ~~~y~ 391 (518)
.++|+
T Consensus 368 ~~~~~ 372 (374)
T cd03817 368 EKLYE 372 (374)
T ss_pred HHHHh
Confidence 66665
No 22
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=3e-33 Score=291.83 Aligned_cols=383 Identities=14% Similarity=0.102 Sum_probs=239.0
Q ss_pred cccEEEEEeeccCCc--ccccccchHHHHHHHHhcCCeeEEEEeccCCccccccc-CCCCcccCCh-h-------HHHHH
Q 010098 4 KQQHIAIFTTASLPW--LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQV-YPGNITFASP-K-------EQEAY 72 (518)
Q Consensus 4 ~~~rI~ivt~~~~P~--~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~-~p~~~~~~~~-~-------~~~~~ 72 (518)
++|||++|+.-..|+ .+|-+-..-.+.++|.+.| |+|.|+.|.+...+.... ......+..+ . .....
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g-~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHG-VEVRTLVPGYPAVLAGIEDAEQVHSFPDLFGGPARLLAARAGG 80 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCC-CcEEEEeCCCcchhhhhcCceEEEEEeeeCCceEEEEEEEeCC
Confidence 459999999988886 4666666677889999998 999999997754321100 0000000000 0 00000
Q ss_pred HHHhhhcccCCCCCCcccccCc----cc-ccccccccchhhHHhhc----CCCCCcEEEEcCCchhhhhhchHHHHh--h
Q 010098 73 VRWWLEDRTGFTSTFDTRFYPG----KF-AADKKSILAVGDITEII----PDEEADIAVLEEPEHLTWFHHGKRWKA--K 141 (518)
Q Consensus 73 ~~~~~~~~~~~~~~~~i~~~~~----~~-~~~~~~i~~~~~l~~~i----~~~~~Dvi~~~~~~~~~~~~~~~~~~~--~ 141 (518)
+..++-..-.+.... -..|.. .| ....+..+......+++ .+.+|||||+|+.... ++ +..+.. +
T Consensus 81 v~~~~~~~~~~f~r~-~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~-l~--~~~l~~~~~ 156 (485)
T PRK14099 81 LDLFVLDAPHLYDRP-GNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAG-LA--PAYLHYSGR 156 (485)
T ss_pred ceEEEEeChHhhCCC-CCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHH-HH--HHHHHhCCC
Confidence 000000000000000 000100 00 01111111112222222 3578999999996544 33 222321 2
Q ss_pred cC-CEEEEEeCCh-hhhhhh-----hcchH--HHHHHHHH-----HHHHHhhhhccEEEEeChhhhccC-----------
Q 010098 142 FR-FVVGIVHTNY-LEYVKR-----EKNDR--LQAFLLEF-----VNSWLARVHCHKVIRLSAATQEYP----------- 196 (518)
Q Consensus 142 ~~-~~v~~~h~~~-~~~~~~-----~~~~~--~~~~~~~~-----~~~~~~~~~ad~vi~~S~~~~~~~----------- 196 (518)
.+ |.|.|+|... ...... .+... .......+ +.+...+ +||.|+++|+..++..
T Consensus 157 ~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~-~ad~vitVS~~~a~ei~~~~~g~gl~~ 235 (485)
T PRK14099 157 PAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQ-LADRITTVSPTYALEIQGPEAGMGLDG 235 (485)
T ss_pred CCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHH-hcCeeeecChhHHHHHhcccCCcChHH
Confidence 23 8999999652 110000 00000 00000000 1122222 3899999997766521
Q ss_pred ------CCceecccccCCCCcCcchh-------------------hHHHhhcCCC--CcccEEEEEEeecccCCHHHHHH
Q 010098 197 ------NSIVCNVHGVNPKFLEIGEK-------------------KMEQQQNGNK--AFTKGAYYIGRMVWSKGYEELLG 249 (518)
Q Consensus 197 ------~~~~~~~~GVd~~~~~~~~~-------------------~~~~~~~~~~--~~~~~il~vGr~~~~Kg~~~ll~ 249 (518)
.+...+.||||++.|.|... ...++..+++ ++.++++++||+.++||++.+++
T Consensus 236 ~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~li~~VgRL~~~KG~d~Li~ 315 (485)
T PRK14099 236 LLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPDALLLGVISRLSWQKGLDLLLE 315 (485)
T ss_pred HHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCcccCCcEEEEEecCCccccHHHHHH
Confidence 12345568999988776432 1223445554 34678999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEEeCCCC--hHHHHHHHHHcCCeEE-EeCCCCChHHHH-hhcCeeEecCCCCCCchHHHHHHHcC
Q 010098 250 LLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLVVR-VYPGRDHADPIF-HDYKVFLNPSTTDVVCTATAEALAMG 325 (518)
Q Consensus 250 a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~~~l~v~-~~~~~~~~~~l~-~~adv~v~pS~~E~~~~~~lEAma~G 325 (518)
|+.++.+. +++|+++|+|+. .+.+++++++++..+. +.|..+++..+| +.||+|++||.+|+||++++|||+||
T Consensus 316 A~~~l~~~--~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G 393 (485)
T PRK14099 316 ALPTLLGE--GAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQAGADALLVPSRFEPCGLTQLCALRYG 393 (485)
T ss_pred HHHHHHhc--CcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHhcCCEEEECCccCCCcHHHHHHHHCC
Confidence 99988754 799999999874 5778888887765554 555555666766 57999999999999999999999999
Q ss_pred CeEEeeCCCC-ccccccC---------CcEEeeC--CHHHHHHHHHH---HHhCCCC--CCChHHH-hcCCHHHHHHHHH
Q 010098 326 KIVVCANHPS-NDFFKQF---------PNCRTYD--GRNGFVEATLK---ALAEEPA--QPTDAQT-HQLSWESATERFL 387 (518)
Q Consensus 326 ~PVV~t~~g~-~e~i~~~---------~~g~~~~--d~~~l~~~i~~---ll~~~~~--~l~~~~~-~~~sw~~~~~~~~ 387 (518)
+|+|+++.|| .|.+.++ .+|++++ |+++++++|.+ +++|++. +|+++++ ++|||++++++|+
T Consensus 394 ~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~~d~~~~~~l~~~~~~~~fSw~~~a~~y~ 473 (485)
T PRK14099 394 AVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALFADPVAWRRLQRNGMTTDVSWRNPAQHYA 473 (485)
T ss_pred CCcEEeCCCCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhcCChHHHHHHHH
Confidence 9888899988 8888765 6899974 99999999997 5666654 7777776 8899999999999
Q ss_pred HHHHhcC
Q 010098 388 QVAELVG 394 (518)
Q Consensus 388 ~~y~~~~ 394 (518)
++|+...
T Consensus 474 ~lY~~l~ 480 (485)
T PRK14099 474 ALYRSLV 480 (485)
T ss_pred HHHHHHH
Confidence 9999654
No 23
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=6.6e-33 Score=284.69 Aligned_cols=350 Identities=15% Similarity=0.128 Sum_probs=233.0
Q ss_pred cEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCC
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTS 85 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (518)
|||++++..+. .+|.+..+..+++.|.++| |+|+|+|+.... ...+. +. .... ..+....
T Consensus 1 mkIl~~~~~~~--~gG~e~~~~~la~~L~~~G-~~V~v~~~~~~~---~~~~~--------~~----~~~~--~~i~~~~ 60 (392)
T cd03805 1 LRVAFIHPDLG--IGGAERLVVDAALALQSRG-HEVTIYTSHHDP---SHCFE--------ET----KDGT--LPVRVRG 60 (392)
T ss_pred CeEEEECCCCC--CchHHHHHHHHHHHHHhCC-CeEEEEcCCCCc---hhcch--------hc----cCCe--eEEEEEe
Confidence 78999987663 5787888899999999998 999999872210 00000 00 0000 0000000
Q ss_pred CCcccccCccccccccccc-chh----hHH-hhcCCCCCcEEEEcCCchhhhhhchHHHHhhcCCEEEEEeCChhhhhhh
Q 010098 86 TFDTRFYPGKFAADKKSIL-AVG----DIT-EIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKR 159 (518)
Q Consensus 86 ~~~i~~~~~~~~~~~~~i~-~~~----~l~-~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~ 159 (518)
. ..+..+......+. .+. .+. ..+...++|+||++......++ .....+ .|++++.|........
T Consensus 61 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~---~~~~~~-~~~i~~~h~~~~~~~~- 131 (392)
T cd03805 61 D----WLPRSIFGRFHILCAYLRMLYLALYLLLLPDEKYDVFIVDQVSACVPL---LKLFSP-SKILFYCHFPDQLLAQ- 131 (392)
T ss_pred E----EEcchhhHhHHHHHHHHHHHHHHHHHHhcccCCCCEEEEcCcchHHHH---HHHhcC-CcEEEEEecChHHhcC-
Confidence 0 00000000000000 000 011 1356678999999875433111 112222 4888898843221111
Q ss_pred hcchHHH---HHHHHHHHHHHhhhhccEEEEeChhhhccC--------CCce-ecccccCCCCcCcchhhHHHhhcCCCC
Q 010098 160 EKNDRLQ---AFLLEFVNSWLARVHCHKVIRLSAATQEYP--------NSIV-CNVHGVNPKFLEIGEKKMEQQQNGNKA 227 (518)
Q Consensus 160 ~~~~~~~---~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~--------~~~~-~~~~GVd~~~~~~~~~~~~~~~~~~~~ 227 (518)
..+... ......+.++..+. +|.++++|+..++.. .+.. +..+|+|.+.+.+..............
T Consensus 132 -~~~~~~~~~~~~~~~~e~~~~~~-ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~~~~~~~~~~~~~~~ 209 (392)
T cd03805 132 -RGSLLKRLYRKPFDWLEEFTTGM-ADKIVVNSNFTASVFKKTFPSLAKNPREVVYPCVDTDSFESTSEDPDPGLLIPKS 209 (392)
T ss_pred -CCcHHHHHHHHHHHHHHHHHhhC-ceEEEEcChhHHHHHHHHhcccccCCcceeCCCcCHHHcCcccccccccccccCC
Confidence 111111 12223333444443 899999998877632 1222 455789987776533221122233445
Q ss_pred cccEEEEEEeecccCCHHHHHHHHHHHHHhc---CCcEEEEEeCCCCh--------HHHHHHHHH-cCCe--EEEeCCCC
Q 010098 228 FTKGAYYIGRMVWSKGYEELLGLLNIYHKEL---AGLEMDLYGNGEDF--------DQIQRAAKK-LKLV--VRVYPGRD 293 (518)
Q Consensus 228 ~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~---~~~~l~ivG~g~~~--------~~l~~~~~~-~~l~--v~~~~~~~ 293 (518)
+.+.++++|++.+.||++.+++++.++.++. ++++|+++|+|+.. +++++++++ +++. +.+.|...
T Consensus 210 ~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~ 289 (392)
T cd03805 210 GKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSIS 289 (392)
T ss_pred CceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCC
Confidence 5788999999999999999999999998887 89999999998653 678888888 7764 67778665
Q ss_pred Ch--HHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC-CHHHHHHHHHHHHhCCCC--
Q 010098 294 HA--DPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD-GRNGFVEATLKALAEEPA-- 367 (518)
Q Consensus 294 ~~--~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~-d~~~l~~~i~~ll~~~~~-- 367 (518)
+. .++|+.||++++||..|+||++++||||||+|||+++.++ .|++.++.+|++++ |+++++++|.+++++++.
T Consensus 290 ~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~~~~~~~~a~~i~~l~~~~~~~~ 369 (392)
T cd03805 290 DSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGGPLETVVDGETGFLCEPTPEEFAEAMLKLANDPDLAD 369 (392)
T ss_pred hHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCCcHHHhccCCceEEeCCCHHHHHHHHHHHHhChHHHH
Confidence 44 4899999999999999999999999999999999999998 89999999999875 999999999999999875
Q ss_pred CCChHHH----hcCCHHHHHHHH
Q 010098 368 QPTDAQT----HQLSWESATERF 386 (518)
Q Consensus 368 ~l~~~~~----~~~sw~~~~~~~ 386 (518)
+|+++++ ++|||+.+++++
T Consensus 370 ~~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 370 RMGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred HHHHHHHHHHHHhcCHHHHhhhC
Confidence 7888776 789999998764
No 24
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=100.00 E-value=1.6e-32 Score=275.31 Aligned_cols=320 Identities=15% Similarity=0.076 Sum_probs=230.0
Q ss_pred cEEEEEeeccCC----cccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhccc
Q 010098 6 QHIAIFTTASLP----WLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRT 81 (518)
Q Consensus 6 ~rI~ivt~~~~P----~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 81 (518)
|||+++++.+.| ..+|.+..+..++++|.+.| |+|+++++......... .+ . ...
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g-~~V~v~~~~~~~~~~~~-~~---------~----------~~~ 59 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARG-HEVTLFASGDSKTAAPL-VP---------V----------VPE 59 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcC-ceEEEEecCCCCcccce-ee---------c----------cCC
Confidence 799999998854 78888888999999999998 99999998432110000 00 0 000
Q ss_pred CCCCCCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhh
Q 010098 82 GFTSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKRE 160 (518)
Q Consensus 82 ~~~~~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~ 160 (518)
.. .... .. ...........+.+++++.+||+||+|......+ +.+..+ |++.+.|.....+...
T Consensus 60 ~~----~~~~-~~---~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~------~~~~~~~~~v~~~h~~~~~~~~~- 124 (335)
T cd03802 60 PL----RLDA-PG---RDRAEAEALALAERALAAGDFDIVHNHSLHLPLP------FARPLPVPVVTTLHGPPDPELLK- 124 (335)
T ss_pred Cc----cccc-ch---hhHhhHHHHHHHHHHHhcCCCCEEEecCcccchh------hhcccCCCEEEEecCCCCcccch-
Confidence 00 0000 00 0011111244577888899999999998776622 223333 8999999665432210
Q ss_pred cchHHHHHHHHHHHHHHhhhhccEEEEeChhhhccCC---CceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEe
Q 010098 161 KNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPN---SIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGR 237 (518)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~---~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr 237 (518)
...... ..+.+++.|+..++... +..++.+|+|.+.|.+. +.....++|+|+
T Consensus 125 ------------~~~~~~--~~~~~~~~s~~~~~~~~~~~~~~vi~ngvd~~~~~~~-----------~~~~~~i~~~Gr 179 (335)
T cd03802 125 ------------LYYAAR--PDVPFVSISDAQRRPWPPLPWVATVHNGIDLDDYPFR-----------GPKGDYLLFLGR 179 (335)
T ss_pred ------------HHHhhC--cCCeEEEecHHHHhhcccccccEEecCCcChhhCCCC-----------CCCCCEEEEEEe
Confidence 111112 36889999988777543 34455679998877641 122567999999
Q ss_pred ecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHc---CCeEEEeCCCCCh--HHHHhhcCeeEecCC-C
Q 010098 238 MVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKL---KLVVRVYPGRDHA--DPIFHDYKVFLNPST-T 311 (518)
Q Consensus 238 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~---~l~v~~~~~~~~~--~~l~~~adv~v~pS~-~ 311 (518)
+.+.||++.+++++.+ .+++|+++|.|++.+.+....+.. +..+.+.|..++. .++|+.+|++++||. .
T Consensus 180 ~~~~Kg~~~li~~~~~-----~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~ 254 (335)
T cd03802 180 ISPEKGPHLAIRAARR-----AGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWE 254 (335)
T ss_pred eccccCHHHHHHHHHh-----cCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCccc
Confidence 9999999999999743 379999999998877766665554 3457888876544 589999999999997 6
Q ss_pred CCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeCCHHHHHHHHHHHHhCCCCCCChHHHhcCCHHHHHHHHHHHH
Q 010098 312 DVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYDGRNGFVEATLKALAEEPAQPTDAQTHQLSWESATERFLQVA 390 (518)
Q Consensus 312 E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~~~~l~~~~~~~~sw~~~~~~~~~~y 390 (518)
|+||++++||||||+|||+++.|+ .|++.++.+|++++++++++++|.++.+.+.....+.+.++|||+.++++++++|
T Consensus 255 E~~~~~~lEAma~G~PvI~~~~~~~~e~i~~~~~g~l~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~y 334 (335)
T cd03802 255 EPFGLVMIEAMACGTPVIAFRRGAVPEVVEDGVTGFLVDSVEELAAAVARADRLDRAACRRRAERRFSAARMVDDYLALY 334 (335)
T ss_pred CCcchHHHHHHhcCCCEEEeCCCCchhheeCCCcEEEeCCHHHHHHHHHHHhccHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999999999999999999998 9999999999999889999999999876543333333449999999999999998
Q ss_pred H
Q 010098 391 E 391 (518)
Q Consensus 391 ~ 391 (518)
+
T Consensus 335 ~ 335 (335)
T cd03802 335 R 335 (335)
T ss_pred C
Confidence 5
No 25
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=7.1e-33 Score=289.38 Aligned_cols=384 Identities=15% Similarity=0.107 Sum_probs=241.6
Q ss_pred CCccccEEEEEeeccCCc--ccccccchHHHHHHHHhcCCeeEEEEeccCCccccccc-CCCC---cccCChhHHHHHHH
Q 010098 1 MDRKQQHIAIFTTASLPW--LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQV-YPGN---ITFASPKEQEAYVR 74 (518)
Q Consensus 1 M~~~~~rI~ivt~~~~P~--~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~-~p~~---~~~~~~~~~~~~~~ 74 (518)
|.++.|||+++++-..|+ .+|-+-..-.+.++|++.| |+|.|+.|.+....+... .+.. ..+..+-. ...
T Consensus 1 ~~~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g-~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~--~~~- 76 (489)
T PRK14098 1 MSRRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEG-FEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLK--EKT- 76 (489)
T ss_pred CCCCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCC-CeEEEEcCCCCchhhhhhccccceEEEEEEEeec--Cee-
Confidence 555569999999888886 4666666677889999998 999999997754322100 0000 00000000 000
Q ss_pred Hhhhc----------ccCCC--CCC--cccccCc-----cc-ccccccccchhhHHhhcC--CCCCcEEEEcCCchhhhh
Q 010098 75 WWLED----------RTGFT--STF--DTRFYPG-----KF-AADKKSILAVGDITEIIP--DEEADIAVLEEPEHLTWF 132 (518)
Q Consensus 75 ~~~~~----------~~~~~--~~~--~i~~~~~-----~~-~~~~~~i~~~~~l~~~i~--~~~~Dvi~~~~~~~~~~~ 132 (518)
.+... .+.+. +.+ +-..|.. -| ....+..+......++++ ..+|||||+|+.... +.
T Consensus 77 ~~~~~~~~~~~~~~v~~~~~~~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~-l~ 155 (489)
T PRK14098 77 DLLHVKVTALPSSKIQTYFLYNEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAG-LV 155 (489)
T ss_pred EEEEEEEecccCCCceEEEEeCHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHH-HH
Confidence 00000 00000 000 0000100 00 011111111122233333 357999999985543 33
Q ss_pred hchHHHHhhc-------C-CEEEEEeCChhhhhhh-hcchH-HHHHHHHHH---------HHHHhhhhccEEEEeChhhh
Q 010098 133 HHGKRWKAKF-------R-FVVGIVHTNYLEYVKR-EKNDR-LQAFLLEFV---------NSWLARVHCHKVIRLSAATQ 193 (518)
Q Consensus 133 ~~~~~~~~~~-------~-~~v~~~h~~~~~~~~~-~~~~~-~~~~~~~~~---------~~~~~~~~ad~vi~~S~~~~ 193 (518)
+..+..+. + |.|.|+|......... ..... +.......+ .+...+ +||.|+++|+..+
T Consensus 156 --~~~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~n~lk~~i~-~ad~VitVS~~~a 232 (489)
T PRK14098 156 --PLLLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGDEVNMLYTGVE-HADLLTTTSPRYA 232 (489)
T ss_pred --HHHHHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCCcccHHHHHHH-hcCcceeeCHHHH
Confidence 22233222 3 8999999653211000 00000 000000000 011111 4899999997666
Q ss_pred ccC------------------CCceecccccCCCCcCcchhh-------------------HHHhhcCCC--CcccEEEE
Q 010098 194 EYP------------------NSIVCNVHGVNPKFLEIGEKK-------------------MEQQQNGNK--AFTKGAYY 234 (518)
Q Consensus 194 ~~~------------------~~~~~~~~GVd~~~~~~~~~~-------------------~~~~~~~~~--~~~~~il~ 234 (518)
+.. .+...++||||++.|.|.... ..++..+++ ++.+++++
T Consensus 233 ~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~~~~~~~i~~ 312 (489)
T PRK14098 233 EEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPFDEETPLVGV 312 (489)
T ss_pred HHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCCccCCCEEEE
Confidence 521 123445689999887764321 122234443 35789999
Q ss_pred EEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC--hHHHHHHHHHcCCeEEEeCCCCCh--HHHHhhcCeeEecCC
Q 010098 235 IGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLVVRVYPGRDHA--DPIFHDYKVFLNPST 310 (518)
Q Consensus 235 vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~~~l~v~~~~~~~~~--~~l~~~adv~v~pS~ 310 (518)
+||+.++||++.+++|+.++.+. +++|+|+|+|+. .+.+++++++++..+.+.+..++. ..+|+.||+|++||.
T Consensus 313 vgRl~~~KG~d~li~a~~~l~~~--~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~aDi~l~PS~ 390 (489)
T PRK14098 313 IINFDDFQGAELLAESLEKLVEL--DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAGLDMLLMPGK 390 (489)
T ss_pred eccccccCcHHHHHHHHHHHHhc--CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHhCCEEEeCCC
Confidence 99999999999999999998754 799999999875 478899988887678888766654 589999999999999
Q ss_pred CCCCchHHHHHHHcCCeEEeeCCCC-cccccc----CCcEEeeC--CHHHHHHHHHHHH---hCCCC--CCChHHH-hcC
Q 010098 311 TDVVCTATAEALAMGKIVVCANHPS-NDFFKQ----FPNCRTYD--GRNGFVEATLKAL---AEEPA--QPTDAQT-HQL 377 (518)
Q Consensus 311 ~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~----~~~g~~~~--d~~~l~~~i~~ll---~~~~~--~l~~~~~-~~~ 377 (518)
.|+||++.+|||+||+|+|+++.|| .|.+.+ +.+|++++ |+++++++|.+++ +|++. ++++++. ++|
T Consensus 391 ~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~~~~~~~~~~~~~~~~f 470 (489)
T PRK14098 391 IESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYHDEERWEELVLEAMERDF 470 (489)
T ss_pred CCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999998 777753 67999974 9999999999865 44443 5555544 889
Q ss_pred CHHHHHHHHHHHHHhcC
Q 010098 378 SWESATERFLQVAELVG 394 (518)
Q Consensus 378 sw~~~~~~~~~~y~~~~ 394 (518)
||+..+++|+++|+...
T Consensus 471 sw~~~a~~y~~lY~~~~ 487 (489)
T PRK14098 471 SWKNSAEEYAQLYRELL 487 (489)
T ss_pred ChHHHHHHHHHHHHHHh
Confidence 99999999999999653
No 26
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=2.4e-32 Score=291.53 Aligned_cols=279 Identities=11% Similarity=0.003 Sum_probs=205.3
Q ss_pred hhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEE-EEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhcc
Q 010098 106 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVG-IVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCH 183 (518)
Q Consensus 106 ~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~-~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 183 (518)
...+.+++++.+|||||+|..... ++ +...++..+ |+|. +.|+..+... . ..+ ......+...+....++
T Consensus 389 ~~~L~~~lk~~kpDIVH~h~~~a~-~l--g~lAa~~~gvPvIv~t~h~~~~~~~-~---~~~-~~~~~~l~~~l~~~~~~ 460 (694)
T PRK15179 389 TTKLTDVMRSSVPSVVHIWQDGSI-FA--CALAALLAGVPRIVLSVRTMPPVDR-P---DRY-RVEYDIIYSELLKMRGV 460 (694)
T ss_pred HHHHHHHHHHcCCcEEEEeCCcHH-HH--HHHHHHHcCCCEEEEEeCCCccccc-h---hHH-HHHHHHHHHHHHhcCCe
Confidence 456888899999999999987664 22 222333333 6654 5564322111 0 111 11122222333333345
Q ss_pred EEEEeChhhhc-------cCC-CceecccccCCCCcCcchhhHH-Hh--hcCCCCcccEEEEEEeecccCCHHHHHHHHH
Q 010098 184 KVIRLSAATQE-------YPN-SIVCNVHGVNPKFLEIGEKKME-QQ--QNGNKAFTKGAYYIGRMVWSKGYEELLGLLN 252 (518)
Q Consensus 184 ~vi~~S~~~~~-------~~~-~~~~~~~GVd~~~~~~~~~~~~-~~--~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~ 252 (518)
.+++.|+..++ .+. +..++.||||...|.+.+.... .. ....+++.++|+++||+.+.||++.+++|+.
T Consensus 461 i~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a 540 (694)
T PRK15179 461 ALSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQ 540 (694)
T ss_pred EEEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHhcCCCchhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHH
Confidence 66666765433 122 3345568999877654332211 11 1122344678999999999999999999999
Q ss_pred HHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCe--EEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEe
Q 010098 253 IYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVC 330 (518)
Q Consensus 253 ~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~--v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~ 330 (518)
++.++.|+++|+|+|+|+..+.++++++++++. +.|.|..+++..+|+.+|+||+||.+|+||++++||||||+|||+
T Consensus 541 ~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVa 620 (694)
T PRK15179 541 RFAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLSRRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVT 620 (694)
T ss_pred HHHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEE
Confidence 998889999999999999999999999999876 667788888999999999999999999999999999999999999
Q ss_pred eCCCC-ccccccCCcEEeeC--C--HHHHHHHHHHHHhCCCC--CCChHHH----hcCCHHHHHHHHHHHHHh
Q 010098 331 ANHPS-NDFFKQFPNCRTYD--G--RNGFVEATLKALAEEPA--QPTDAQT----HQLSWESATERFLQVAEL 392 (518)
Q Consensus 331 t~~g~-~e~i~~~~~g~~~~--d--~~~l~~~i~~ll~~~~~--~l~~~~~----~~~sw~~~~~~~~~~y~~ 392 (518)
|+.|| .|++.++.+|++++ | +++++++|.+++.+... .++++++ ++|||+.++++++++|+.
T Consensus 621 t~~gG~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~~~FS~~~~~~~~~~lY~~ 693 (694)
T PRK15179 621 TLAGGAGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWASARFSLNQMIASTVRCYQM 693 (694)
T ss_pred ECCCChHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHHHHHHhCCHHHHHHHHHHHhCC
Confidence 99998 99999999999974 4 56899999998876554 5666665 789999999999999974
No 27
>PLN00142 sucrose synthase
Probab=100.00 E-value=1.7e-32 Score=291.89 Aligned_cols=274 Identities=12% Similarity=0.104 Sum_probs=193.4
Q ss_pred CCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcch--HHHH--HHHH-HHHHHHhhhhccEEEEeC
Q 010098 116 EEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKND--RLQA--FLLE-FVNSWLARVHCHKVIRLS 189 (518)
Q Consensus 116 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~--~~~~--~~~~-~~~~~~~~~~ad~vi~~S 189 (518)
.+||+||.|++... ..|..++++++ |.+.|.|+............ .... .+.. ..........||.||+.|
T Consensus 407 ~~PDlIHaHYwdsg---~vA~~La~~lgVP~v~T~HsL~k~K~~~~~~~~~~~e~~y~~~~r~~aE~~a~~~Ad~IIasT 483 (815)
T PLN00142 407 GKPDLIIGNYSDGN---LVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKFDDKYHFSCQFTADLIAMNHADFIITST 483 (815)
T ss_pred CCCCEEEECCccHH---HHHHHHHHHhCCCEEEEcccchhhhccccCCcccccchhhhhhhchHHHHHHHHhhhHHHhCc
Confidence 45999999998876 34677888888 99999997743322111110 0000 0110 111112222489999998
Q ss_pred hhhhc--------c---------------------CCCceecccccCCCCcCcchhhHH-------------------Hh
Q 010098 190 AATQE--------Y---------------------PNSIVCNVHGVNPKFLEIGEKKME-------------------QQ 221 (518)
Q Consensus 190 ~~~~~--------~---------------------~~~~~~~~~GVd~~~~~~~~~~~~-------------------~~ 221 (518)
..... + ..+..+..+|+|...|.|...... ..
T Consensus 484 ~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~~e 563 (815)
T PLN00142 484 YQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQNDE 563 (815)
T ss_pred HHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHhhHHhhcccchhhcCChHHHHH
Confidence 44331 1 112233446999875543321111 11
Q ss_pred hcCC--CCcccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC------h------HHHHHHHHHcCCe--
Q 010098 222 QNGN--KAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED------F------DQIQRAAKKLKLV-- 285 (518)
Q Consensus 222 ~~~~--~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~------~------~~l~~~~~~~~l~-- 285 (518)
..+. +++.++|+++||+.+.||++.|++|+.++.+..++++|+|+|+|.+ . +.+.++++++++.
T Consensus 564 ~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~ 643 (815)
T PLN00142 564 HIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQ 643 (815)
T ss_pred HhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCc
Confidence 1232 3456799999999999999999999999877777899999998721 1 3467788888876
Q ss_pred EEEeCCCC---ChHHHHh----hcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC--CHHHHH
Q 010098 286 VRVYPGRD---HADPIFH----DYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFV 355 (518)
Q Consensus 286 v~~~~~~~---~~~~l~~----~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~ 355 (518)
+.+.|... ...++|+ .+|+||+||.+|+||++++||||||+|||+|+.|| .|++.+|.+|++++ |+++++
T Consensus 644 V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG~~EIV~dG~tG~LV~P~D~eaLA 723 (815)
T PLN00142 644 FRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGGPAEIIVDGVSGFHIDPYHGDEAA 723 (815)
T ss_pred EEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHH
Confidence 55556432 3344544 46999999999999999999999999999999999 99999999999985 999999
Q ss_pred HHHHHHH----hCCCC--CCChHHH----hcCCHHHHHHHHHHHHHh
Q 010098 356 EATLKAL----AEEPA--QPTDAQT----HQLSWESATERFLQVAEL 392 (518)
Q Consensus 356 ~~i~~ll----~~~~~--~l~~~~~----~~~sw~~~~~~~~~~y~~ 392 (518)
++|.+++ +|++. +|+++++ ++|||+.++++++++...
T Consensus 724 ~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~FSWe~~A~rll~L~~~ 770 (815)
T PLN00142 724 NKIADFFEKCKEDPSYWNKISDAGLQRIYECYTWKIYAERLLTLGGV 770 (815)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 9998754 56665 8888876 689999999999998753
No 28
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=100.00 E-value=2.2e-32 Score=281.95 Aligned_cols=360 Identities=14% Similarity=0.098 Sum_probs=230.7
Q ss_pred ccEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCC
Q 010098 5 QQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFT 84 (518)
Q Consensus 5 ~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (518)
.+||+++++.. .|.+.+++.+++.|+++| |+|+|++...........-.+++.+. .+...
T Consensus 3 ~~~~~~~~~~~----~~~~~R~~~~a~~L~~~G-~~V~ii~~~~~~~~~~~~~~~~v~~~---------------~~~~~ 62 (415)
T cd03816 3 RKRVCVLVLGD----IGRSPRMQYHALSLAKHG-WKVDLVGYLETPPHDEILSNPNITIH---------------PLPPP 62 (415)
T ss_pred ccEEEEEEecc----cCCCHHHHHHHHHHHhcC-ceEEEEEecCCCCCHHHhcCCCEEEE---------------ECCCC
Confidence 37899999854 566889999999999998 99999987211000000000000000 00000
Q ss_pred CCCcccccCcccccccccccc-hhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhh-hc
Q 010098 85 STFDTRFYPGKFAADKKSILA-VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKR-EK 161 (518)
Q Consensus 85 ~~~~i~~~~~~~~~~~~~i~~-~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~-~~ 161 (518)
. ......+.........+.. +.-+..+++..+||+||+|++........+..+++..+ |+|.+.|+.+...... ..
T Consensus 63 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~~~~~~~ 141 (415)
T cd03816 63 P-QRLNKLPFLLFAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTILALKLG 141 (415)
T ss_pred c-cccccchHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHHHhcccC
Confidence 0 0000000000000000000 11122345667899999998654322111222344334 8999999654322111 11
Q ss_pred chHHHHHHHHHHHHHHhhhhccEEEEeChhhhccC------CCc-eecccccCCCCcCcchhhHHHhh------------
Q 010098 162 NDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYP------NSI-VCNVHGVNPKFLEIGEKKMEQQQ------------ 222 (518)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~------~~~-~~~~~GVd~~~~~~~~~~~~~~~------------ 222 (518)
.......+..++.+++.+. ||.+|++|+.+++.. .+. .+..+|. ...|.+.........
T Consensus 142 ~~~~~~~~~~~~e~~~~~~-ad~ii~vS~~~~~~l~~~~~~~~ki~vI~Ng~-~~~f~p~~~~~~~~~~~~~~~~~~~~~ 219 (415)
T cd03816 142 ENHPLVRLAKWYEKLFGRL-ADYNLCVTKAMKEDLQQFNNWKIRATVLYDRP-PEQFRPLPLEEKHELFLKLAKTFLTRE 219 (415)
T ss_pred CCCHHHHHHHHHHHHHhhc-CCEeeecCHHHHHHHHhhhccCCCeeecCCCC-HHHceeCcHHHHHHHHHhccccccccc
Confidence 1111223555556666665 899999998887732 222 2333553 333333222111110
Q ss_pred -----cC-CCCcccEEEEEEeecccCCHHHHHHHHHHHHHh------cCCcEEEEEeCCCChHHHHHHHHHcCCe-EEEe
Q 010098 223 -----NG-NKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKE------LAGLEMDLYGNGEDFDQIQRAAKKLKLV-VRVY 289 (518)
Q Consensus 223 -----~~-~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~------~~~~~l~ivG~g~~~~~l~~~~~~~~l~-v~~~ 289 (518)
.+ .++...+++++||+.+.||++.|++|+..+++. .|+++|+|+|+|+..+++++++++++++ +.++
T Consensus 220 ~~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~~~~~ 299 (415)
T cd03816 220 LRIGAVQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKELKLKKVTIR 299 (415)
T ss_pred cccccceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHHHcCCCcEEEE
Confidence 01 123345788899999999999999999998753 4689999999999999999999999986 4445
Q ss_pred C---CCCChHHHHhhcCeeEecC---CCCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeCCHHHHHHHHHHHH
Q 010098 290 P---GRDHADPIFHDYKVFLNPS---TTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYDGRNGFVEATLKAL 362 (518)
Q Consensus 290 ~---~~~~~~~l~~~adv~v~pS---~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~d~~~l~~~i~~ll 362 (518)
+ +.+++.++|+.||+++.|+ ..|++|++++||||||+|||+++.++ .|+++++.+|++++|+++++++|.+++
T Consensus 300 ~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~~~G~lv~d~~~la~~i~~ll 379 (415)
T cd03816 300 TPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVKHGENGLVFGDSEELAEQLIDLL 379 (415)
T ss_pred cCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhcCCCCEEEECCHHHHHHHHHHHH
Confidence 4 3467779999999999753 35789999999999999999999988 999999999999999999999999999
Q ss_pred hC---CCC--CCChHHH--hcCCHHHHHHHHH
Q 010098 363 AE---EPA--QPTDAQT--HQLSWESATERFL 387 (518)
Q Consensus 363 ~~---~~~--~l~~~~~--~~~sw~~~~~~~~ 387 (518)
+| ++. +|+++++ ..++|+...++.+
T Consensus 380 ~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~ 411 (415)
T cd03816 380 SNFPNRGKLNSLKKGAQEESELRWDENWDRVV 411 (415)
T ss_pred hcCCCHHHHHHHHHHHHHhhhcCHHHHHHHHh
Confidence 99 554 8888887 6788888776654
No 29
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=2.5e-32 Score=287.61 Aligned_cols=371 Identities=16% Similarity=0.163 Sum_probs=237.2
Q ss_pred EEEEEeeccCCc--ccccccchHHHHHHHHhcCCeeEEEEeccCCccccccc-CCCC-----cccCChhHHHHHHHHhh-
Q 010098 7 HIAIFTTASLPW--LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQV-YPGN-----ITFASPKEQEAYVRWWL- 77 (518)
Q Consensus 7 rI~ivt~~~~P~--~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~-~p~~-----~~~~~~~~~~~~~~~~~- 77 (518)
||++||..+.|+ .||.+.....++++|++.| |+|+|++|.+........ .... +.+.... ..++.|.
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G-~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 76 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLG-HDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRP---EYVGVFEL 76 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCC-CeEEEEecCCcchhhHhccCeEEEEEEeeccCCce---eEEEEEEE
Confidence 699999888786 7898888899999999998 999999996643211100 0000 0000000 0000000
Q ss_pred ---hcccCCCCC--C--cc-----cccCcccccccccccchhhHHhhcC--CCCCcEEEEcCCchhhhhhchHHHHhhc-
Q 010098 78 ---EDRTGFTST--F--DT-----RFYPGKFAADKKSILAVGDITEIIP--DEEADIAVLEEPEHLTWFHHGKRWKAKF- 142 (518)
Q Consensus 78 ---~~~~~~~~~--~--~i-----~~~~~~~~~~~~~i~~~~~l~~~i~--~~~~Dvi~~~~~~~~~~~~~~~~~~~~~- 142 (518)
...+.+... + +. ..+... ....+.........+++. ..+|||||+|+.... +. +..++...
T Consensus 77 ~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~-~~--~~~l~~~~~ 152 (476)
T cd03791 77 PVDGVPVYFLDNPDYFDRPGLYDDSGYDYE-DNAERFALFSRAALELLRRLGWKPDIIHCHDWHTG-LV--PALLKEKYA 152 (476)
T ss_pred EeCCceEEEEcChHHcCCCCCCCccCCCCc-cHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHH-HH--HHHHHHhhc
Confidence 000000000 0 00 000000 000011111112233333 378999999987654 22 22233332
Q ss_pred -----C-CEEEEEeCChhhhhhhhcchHHHH--------H---------HHHHHHHHHhhhhccEEEEeChhhhccC---
Q 010098 143 -----R-FVVGIVHTNYLEYVKREKNDRLQA--------F---------LLEFVNSWLARVHCHKVIRLSAATQEYP--- 196 (518)
Q Consensus 143 -----~-~~v~~~h~~~~~~~~~~~~~~~~~--------~---------~~~~~~~~~~~~~ad~vi~~S~~~~~~~--- 196 (518)
+ |+|+|+|+....... ....+.. . ... +.+...+ +||.++++|+..++..
T Consensus 153 ~~~~~~~~~v~tiH~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~ad~v~~vS~~~~~~i~~~ 228 (476)
T cd03791 153 DPFFKNIKTVFTIHNLAYQGVF--PLEALEDLGLPWEELFHIDGLEFYGQVN-FLKAGIV-YADAVTTVSPTYAREILTP 228 (476)
T ss_pred cccCCCCCEEEEeCCCCCCCCC--CHHHHHHcCCCccchhhhcccccCCccc-HHHHHHH-hcCcCeecCHhHHHHhCCC
Confidence 3 899999965321100 0000000 0 001 1122222 3899999997665421
Q ss_pred --------------CCceecccccCCCCcCcchhhH-------------------HHhhcCC--CCcccEEEEEEeeccc
Q 010098 197 --------------NSIVCNVHGVNPKFLEIGEKKM-------------------EQQQNGN--KAFTKGAYYIGRMVWS 241 (518)
Q Consensus 197 --------------~~~~~~~~GVd~~~~~~~~~~~-------------------~~~~~~~--~~~~~~il~vGr~~~~ 241 (518)
.+...++||+|.+.+.+..... .++..+. .++.++++|+||+.++
T Consensus 229 ~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~~ 308 (476)
T cd03791 229 EFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQ 308 (476)
T ss_pred CCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEeecccc
Confidence 2344566899998877543221 2334444 3568899999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEeCCCC--hHHHHHHHHHcCCeEEEeCCCCCh--HHHHhhcCeeEecCCCCCCchH
Q 010098 242 KGYEELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLVVRVYPGRDHA--DPIFHDYKVFLNPSTTDVVCTA 317 (518)
Q Consensus 242 Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~~~l~v~~~~~~~~~--~~l~~~adv~v~pS~~E~~~~~ 317 (518)
||++.+++++.++.+. +++|+++|+|+. .+.++++++++..++.++++..+. ..+|+.||++++||..|+||++
T Consensus 309 Kg~~~li~a~~~l~~~--~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~ 386 (476)
T cd03791 309 KGIDLLLEALPELLEL--GGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGADFFLMPSRFEPCGLT 386 (476)
T ss_pred ccHHHHHHHHHHHHHc--CcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhCCEEECCCCCCCCcHH
Confidence 9999999999998765 499999999865 366777777765556666655433 3789999999999999999999
Q ss_pred HHHHHHcCCeEEeeCCCC-ccccccCC------cEEeeC--CHHHHHHHHHHHHhCC---CC--CCChHHH-hcCCHHHH
Q 010098 318 TAEALAMGKIVVCANHPS-NDFFKQFP------NCRTYD--GRNGFVEATLKALAEE---PA--QPTDAQT-HQLSWESA 382 (518)
Q Consensus 318 ~lEAma~G~PVV~t~~g~-~e~i~~~~------~g~~~~--d~~~l~~~i~~ll~~~---~~--~l~~~~~-~~~sw~~~ 382 (518)
++|||+||+|||+++.|| .|++.++. +|++++ |+++++++|.++++.. +. ++++++. +.|||+.+
T Consensus 387 ~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~fsw~~~ 466 (476)
T cd03791 387 QMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYRDPEAWRKLQRNAMAQDFSWDRS 466 (476)
T ss_pred HHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhccCCChHHH
Confidence 999999999999999998 99999987 999974 8999999999988643 22 5666665 78999999
Q ss_pred HHHHHHHHH
Q 010098 383 TERFLQVAE 391 (518)
Q Consensus 383 ~~~~~~~y~ 391 (518)
+++|+++|+
T Consensus 467 a~~~~~~y~ 475 (476)
T cd03791 467 AKEYLELYR 475 (476)
T ss_pred HHHHHHHHh
Confidence 999999997
No 30
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=4.5e-32 Score=278.82 Aligned_cols=269 Identities=13% Similarity=0.048 Sum_probs=189.3
Q ss_pred CCCCCcEEEEcCCchhhhhhchHHHHhhcC--CEEEEEeCChhh------hhhhhcchHH-HHHHHHHH--HHHHhhhhc
Q 010098 114 PDEEADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLE------YVKREKNDRL-QAFLLEFV--NSWLARVHC 182 (518)
Q Consensus 114 ~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~--~~v~~~h~~~~~------~~~~~~~~~~-~~~~~~~~--~~~~~~~~a 182 (518)
+..+||+||+|.....+.+ +...+. |+|.+.|..+.. +......... ...+.... .....+ .|
T Consensus 84 ~~~~pdvi~~h~~~~~~~~-----l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a 157 (396)
T cd03818 84 KGFRPDVIVAHPGWGETLF-----LKDVWPDAPLIGYFEFYYRAEGADVGFDPEFPPSLDDALRLRNRNALILLALA-QA 157 (396)
T ss_pred cCCCCCEEEECCccchhhh-----HHHhCCCCCEEEEEeeeecCCCCCCCCCCCCCCchhHHHHHHHhhhHhHHHHH-hC
Confidence 4568999999976544333 444443 777766532211 1110001100 01111110 111122 38
Q ss_pred cEEEEeChhhhccC-----CCceecccccCCCCcCcchhhHHHhh--cCCCCcccEEEEEEe-ecccCCHHHHHHHHHHH
Q 010098 183 HKVIRLSAATQEYP-----NSIVCNVHGVNPKFLEIGEKKMEQQQ--NGNKAFTKGAYYIGR-MVWSKGYEELLGLLNIY 254 (518)
Q Consensus 183 d~vi~~S~~~~~~~-----~~~~~~~~GVd~~~~~~~~~~~~~~~--~~~~~~~~~il~vGr-~~~~Kg~~~ll~a~~~l 254 (518)
|.+|++|+..++.. .+..++.+|+|.+.|.+......... ....++.++|+|+|| +.+.||++.+++|+.++
T Consensus 158 d~vi~~s~~~~~~~~~~~~~ki~vI~ngvd~~~f~~~~~~~~~~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l 237 (396)
T cd03818 158 DAGVSPTRWQRSTFPAELRSRISVIHDGIDTDRLRPDPQARLRLPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPRL 237 (396)
T ss_pred CEEECCCHHHHhhCcHhhccceEEeCCCccccccCCCchhhhcccccccCCCCCeEEEEECCCcccccCHHHHHHHHHHH
Confidence 99999998887743 23445668999988876543222111 112345678999997 99999999999999999
Q ss_pred HHhcCCcEEEEEeCCCC---------hHHHHHHHHHcC----C-eEEEeCCC--CChHHHHhhcCeeEecCCCCCCchHH
Q 010098 255 HKELAGLEMDLYGNGED---------FDQIQRAAKKLK----L-VVRVYPGR--DHADPIFHDYKVFLNPSTTDVVCTAT 318 (518)
Q Consensus 255 ~~~~~~~~l~ivG~g~~---------~~~l~~~~~~~~----l-~v~~~~~~--~~~~~l~~~adv~v~pS~~E~~~~~~ 318 (518)
.++.|+++|+|+|++.. .+..+++.++++ . .+.+.|.. ++..++|+.+|++++||..|++|+++
T Consensus 238 ~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~l 317 (396)
T cd03818 238 LRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSL 317 (396)
T ss_pred HHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHH
Confidence 98899999999997421 112223333332 2 36777755 45569999999999999999999999
Q ss_pred HHHHHcCCeEEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC--CCChHHH----hcCCHHHHHHHHHH
Q 010098 319 AEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT----HQLSWESATERFLQ 388 (518)
Q Consensus 319 lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~--~l~~~~~----~~~sw~~~~~~~~~ 388 (518)
+||||||+|||+|+.|+ .|++.++.+|++++ |+++++++|.++++|++. +|+++++ ++|||+.+++++++
T Consensus 318 lEAmA~G~PVIas~~~g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~~~~~~~~~ 396 (396)
T cd03818 318 LEAMACGCLVVGSDTAPVREVITDGENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALRYDLLSVCLPRQLA 396 (396)
T ss_pred HHHHHCCCCEEEcCCCCchhhcccCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHHHHHHHHhC
Confidence 99999999999999998 99999999999974 999999999999999875 8888877 66999999998863
No 31
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=4.2e-32 Score=278.88 Aligned_cols=357 Identities=15% Similarity=0.099 Sum_probs=235.0
Q ss_pred EEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCccccccc-CCCCcccCChhHHHHHHHHhhhcccCCCC
Q 010098 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQV-YPGNITFASPKEQEAYVRWWLEDRTGFTS 85 (518)
Q Consensus 7 rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (518)
++++.+....|..+|++..+..++.+|++.| |+|+|++........... ..+++.+. ++..
T Consensus 8 ~~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g-~~V~v~~~~~~~~~~~~~~~~~~~~~~---------------~~~~-- 69 (398)
T cd03800 8 HGSPLAQPGGADTGGQNVYVLELARALARLG-HEVDIFTRRIDDALPPIVELAPGVRVV---------------RVPA-- 69 (398)
T ss_pred cccccccCCCCCCCceeehHHHHHHHHhccC-ceEEEEEecCCcccCCccccccceEEE---------------eccc--
Confidence 3444444445677898999999999999998 999999873321110000 00111000 0000
Q ss_pred CCcccccCcccccccccccchhhHHhhcCCC--CCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcc
Q 010098 86 TFDTRFYPGKFAADKKSILAVGDITEIIPDE--EADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKN 162 (518)
Q Consensus 86 ~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~--~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~ 162 (518)
......+.+. ...........+.+.++.. +||+||+|..... +. +..+++..+ |.|.+.|+...........
T Consensus 70 -~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~-~~--~~~~~~~~~~~~i~~~h~~~~~~~~~~~~ 144 (398)
T cd03800 70 -GPAEYLPKEE-LWPYLDEFADDLLRFLRREGGRPDLIHAHYWDSG-LV--ALLLARRLGIPLVHTFHSLGAVKRRHLGA 144 (398)
T ss_pred -ccccCCChhh-cchhHHHHHHHHHHHHHhcCCCccEEEEecCccc-hH--HHHHHhhcCCceEEEeecccccCCccccc
Confidence 0000000000 0000000122344555555 8999999976543 22 344555555 8999999654322111110
Q ss_pred hHH-HHHHHHHHHHHHhhhhccEEEEeChhhhcc-----C--C-CceecccccCCCCcCcchhhHH-HhhcCCCCcccEE
Q 010098 163 DRL-QAFLLEFVNSWLARVHCHKVIRLSAATQEY-----P--N-SIVCNVHGVNPKFLEIGEKKME-QQQNGNKAFTKGA 232 (518)
Q Consensus 163 ~~~-~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~-----~--~-~~~~~~~GVd~~~~~~~~~~~~-~~~~~~~~~~~~i 232 (518)
... .........+...+ .+|.+++.|+..++. . . +..+..+|+|...+.+...... +.....+.+.+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~-~ad~ii~~s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~i 223 (398)
T cd03800 145 ADTYEPARRIEAEERLLR-AADRVIASTPQEAEELYSLYGAYPRRIRVVPPGVDLERFTPYGRAEARRARLLRDPDKPRI 223 (398)
T ss_pred ccccchhhhhhHHHHHHh-hCCEEEEcCHHHHHHHHHHccccccccEEECCCCCccceecccchhhHHHhhccCCCCcEE
Confidence 000 01111112233333 389999999776542 1 1 2345557999877655433222 2223344557899
Q ss_pred EEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCh------HHHHHHHHHcCCe--EEEeCCC--CChHHHHhhc
Q 010098 233 YYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDF------DQIQRAAKKLKLV--VRVYPGR--DHADPIFHDY 302 (518)
Q Consensus 233 l~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~------~~l~~~~~~~~l~--v~~~~~~--~~~~~l~~~a 302 (518)
+|+||+.+.||++.+++++..+.++.++++|+++|++... ..++.+++.+++. +.++|.. +++.++++.|
T Consensus 224 ~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 303 (398)
T cd03800 224 LAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAA 303 (398)
T ss_pred EEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhC
Confidence 9999999999999999999999888889999999987652 3456677777654 5667754 4566999999
Q ss_pred CeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC--CCChHHH---
Q 010098 303 KVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT--- 374 (518)
Q Consensus 303 dv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~--~l~~~~~--- 374 (518)
|++++||..|++|++++||||||+|||+++.++ .|++.++.+|++++ |+++++++|.+++++++. .++++++
T Consensus 304 di~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~ 383 (398)
T cd03800 304 DVFVNPALYEPFGLTALEAMACGLPVVATAVGGPRDIVVDGVTGLLVDPRDPEALAAALRRLLTDPALRRRLSRAGLRRA 383 (398)
T ss_pred CEEEecccccccCcHHHHHHhcCCCEEECCCCCHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988 99999999999974 899999999999998765 6777666
Q ss_pred -hcCCHHHHHHHHH
Q 010098 375 -HQLSWESATERFL 387 (518)
Q Consensus 375 -~~~sw~~~~~~~~ 387 (518)
++|||+.++++|+
T Consensus 384 ~~~~s~~~~~~~~~ 397 (398)
T cd03800 384 RARYTWERVAARLL 397 (398)
T ss_pred HHhCCHHHHHHHHh
Confidence 7899999999886
No 32
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=1.3e-31 Score=271.24 Aligned_cols=328 Identities=14% Similarity=0.095 Sum_probs=225.6
Q ss_pred EEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCCC
Q 010098 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 86 (518)
Q Consensus 7 rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (518)
||+++++.+ ..+|....+..+++.|.+.| |+|+++++.. ... .... .... .....
T Consensus 1 kIl~~~~~~--~~GG~~~~~~~l~~~L~~~~-~~v~~i~~~~--~~~-----------~~~~--~~~~----~~~~~--- 55 (358)
T cd03812 1 KILHIVGTM--NRGGIETFIMNYYRNLDRSK-IQFDFLVTSK--EEG-----------DYDD--EIEK----LGGKI--- 55 (358)
T ss_pred CEEEEeCCC--CCccHHHHHHHHHHhcCccc-eEEEEEEeCC--CCc-----------chHH--HHHH----cCCeE---
Confidence 689998877 56888888889999999887 9999998821 100 0000 0000 00000
Q ss_pred CcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-C-EEEEEeCChhhhhhhhcchH
Q 010098 87 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-F-VVGIVHTNYLEYVKREKNDR 164 (518)
Q Consensus 87 ~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~-~v~~~h~~~~~~~~~~~~~~ 164 (518)
+.+..... ........+.+++++.+||+||+|.+.... + ...+.+..+ + .+...|..+..... ...
T Consensus 56 ~~~~~~~~------~~~~~~~~~~~~~~~~~~Dvv~~~~~~~~~-~--~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~ 123 (358)
T cd03812 56 YYIPARKK------NPLKYFKKLYKLIKKNKYDIVHVHGSSASG-F--ILLAAKKAGVKVRIAHSHNTSDSHDK---KKK 123 (358)
T ss_pred EEecCCCc------cHHHHHHHHHHHHhcCCCCEEEEeCcchhH-H--HHHHHhhCCCCeEEEEeccccccccc---cch
Confidence 00000000 011113346667788999999999987442 2 233444444 4 45566654322111 100
Q ss_pred HHHHHHHHHHHHHhhhhccEEEEeChhhhccC------CCceecccccCCCCcCcchhh-HHHhhcCCCCcccEEEEEEe
Q 010098 165 LQAFLLEFVNSWLARVHCHKVIRLSAATQEYP------NSIVCNVHGVNPKFLEIGEKK-MEQQQNGNKAFTKGAYYIGR 237 (518)
Q Consensus 165 ~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~------~~~~~~~~GVd~~~~~~~~~~-~~~~~~~~~~~~~~il~vGr 237 (518)
......+.....+ .+|.++++|+...+.. .+..+..+|+|.+.+.+.... ..........+.+.|+|+|+
T Consensus 124 --~~~~~~~~~~~~~-~~~~~i~~s~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGr 200 (358)
T cd03812 124 --ILKYKVLRKLINR-LATDYLACSEEAGKWLFGKVKNKKFKVIPNGIDLEKFIFNEEIRKKRRELGILEDKFVIGHVGR 200 (358)
T ss_pred --hhHHHHHHHHHHh-cCCEEEEcCHHHHHHHHhCCCcccEEEEeccCcHHHcCCCchhhhHHHHcCCCCCCEEEEEEec
Confidence 0011222333333 3799999997766632 233455679998766543221 11233444566789999999
Q ss_pred ecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCe--EEEeCCCCChHHHHhhcCeeEecCCCCCCc
Q 010098 238 MVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRDHADPIFHDYKVFLNPSTTDVVC 315 (518)
Q Consensus 238 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~--v~~~~~~~~~~~l~~~adv~v~pS~~E~~~ 315 (518)
+.++||++.+++++..+.++.++++++++|+|+..+.+++.++++++. +.+.|..+++.++|+.||++|+||..|++|
T Consensus 201 ~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~E~~~ 280 (358)
T cd03812 201 FSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDVFLFPSLYEGLP 280 (358)
T ss_pred cccccChHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEecccccCCC
Confidence 999999999999999999888999999999999989999998888765 667777888999999999999999999999
Q ss_pred hHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC-CHHHHHHHHHHHHhCCCC--CCChHHH
Q 010098 316 TATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD-GRNGFVEATLKALAEEPA--QPTDAQT 374 (518)
Q Consensus 316 ~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~-d~~~l~~~i~~ll~~~~~--~l~~~~~ 374 (518)
++++||||||+|||+|+.|+ .|++.++.+++..+ ++++++++|.++++|++. .+...+.
T Consensus 281 ~~~lEAma~G~PvI~s~~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~~ 343 (358)
T cd03812 281 LVLIEAQASGLPCILSDTITKEVDLTDLVKFLSLDESPEIWAEEILKLKSEDRRERSSESIKK 343 (358)
T ss_pred HHHHHHHHhCCCEEEEcCCchhhhhccCccEEeCCCCHHHHHHHHHHHHhCcchhhhhhhhhh
Confidence 99999999999999999998 88888855544444 679999999999999997 4554444
No 33
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=3.2e-31 Score=268.25 Aligned_cols=353 Identities=16% Similarity=0.097 Sum_probs=234.4
Q ss_pred EEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCCC
Q 010098 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 86 (518)
Q Consensus 7 rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (518)
||++++..+.|..+|.+.....++++|.+.| |+|+++++......... ..... ... ....
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g-~~v~v~~~~~~~~~~~~-~~~~~----~~~-----------~~~~--- 60 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLG-HEVTVATTDAGGDPLLV-ALNGV----PVK-----------LFSI--- 60 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcC-CcEEEEecCCCCccchh-hccCc----eee-----------eccc---
Confidence 6999999998899998999999999999998 99999988321110000 00000 000 0000
Q ss_pred CcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHH
Q 010098 87 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRL 165 (518)
Q Consensus 87 ~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~ 165 (518)
. ........ .................++|+||+++........ +..+.++.+ |++.+.|+....+... ...+
T Consensus 61 ~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~ 133 (375)
T cd03821 61 N-VAYGLNLA---RYLFPPSLLAWLRLNIREADIVHVHGLWSYPSLA-AARAARKYGIPYVVSPHGMLDPWALP--HKAL 133 (375)
T ss_pred c-hhhhhhhh---hhccChhHHHHHHHhCCCCCEEEEecccchHHHH-HHHHHHHhCCCEEEEccccccccccc--cchh
Confidence 0 00000000 0000001112222345679999999854432221 233444444 8999999765443311 1111
Q ss_pred HHHHHHHH-HHHHhhhhccEEEEeChhhhcc------CCCceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEee
Q 010098 166 QAFLLEFV-NSWLARVHCHKVIRLSAATQEY------PNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRM 238 (518)
Q Consensus 166 ~~~~~~~~-~~~~~~~~ad~vi~~S~~~~~~------~~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~ 238 (518)
...+.... .+...+ .++.+++.|...... ..+..+.++|+|.+.+.+......+.......+.+.++|+|++
T Consensus 134 ~~~~~~~~~~~~~~~-~~~~i~~~s~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~ 212 (375)
T cd03821 134 KKRLAWFLFERRLLQ-AAAAVHATSEQEAAEIRRLGLKAPIAVIPNGVDIPPFAALPSRGRRRKFPILPDKRIILFLGRL 212 (375)
T ss_pred hhHHHHHHHHHHHHh-cCCEEEECCHHHHHHHHhhCCcccEEEcCCCcChhccCcchhhhhhhhccCCCCCcEEEEEeCc
Confidence 12221111 222222 378888888554432 2233455579998776654332223334455667899999999
Q ss_pred cccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC--hHHHHHHHHHcCCe--EEEeCCCC--ChHHHHhhcCeeEecCCCC
Q 010098 239 VWSKGYEELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLV--VRVYPGRD--HADPIFHDYKVFLNPSTTD 312 (518)
Q Consensus 239 ~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~~~l~--v~~~~~~~--~~~~l~~~adv~v~pS~~E 312 (518)
.+.||++.+++++.++.++.++++|+++|.+.. ...++.+++++++. +.+.|..+ +..++|+.||++++||..|
T Consensus 213 ~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e 292 (375)
T cd03821 213 HPKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSE 292 (375)
T ss_pred chhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccccC
Confidence 999999999999999998889999999998654 34555555677664 66777665 6669999999999999999
Q ss_pred CCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC-CHHHHHHHHHHHHhCCCC--CCChHHH----hcCCHHHHHH
Q 010098 313 VVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD-GRNGFVEATLKALAEEPA--QPTDAQT----HQLSWESATE 384 (518)
Q Consensus 313 ~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~-d~~~l~~~i~~ll~~~~~--~l~~~~~----~~~sw~~~~~ 384 (518)
+||++++|||+||+|||+++.++ .+++.+ ..|++++ +.++++++|.+++++++. .++++++ ++|||+..++
T Consensus 293 ~~~~~~~Eama~G~PvI~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 371 (375)
T cd03821 293 NFGIVVAEALACGTPVVTTDKVPWQELIEY-GCGWVVDDDVDALAAALRRALELPQRLKAMGENGRALVEERFSWTAIAQ 371 (375)
T ss_pred CCCcHHHHHHhcCCCEEEcCCCCHHHHhhc-CceEEeCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999988 888888 7788764 679999999999999865 6776665 8999999999
Q ss_pred HHHH
Q 010098 385 RFLQ 388 (518)
Q Consensus 385 ~~~~ 388 (518)
++++
T Consensus 372 ~~~~ 375 (375)
T cd03821 372 QLLE 375 (375)
T ss_pred HhhC
Confidence 8863
No 34
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=1.5e-31 Score=272.76 Aligned_cols=253 Identities=17% Similarity=0.223 Sum_probs=199.7
Q ss_pred CCCCCcEEEEcCCchhhhhhchHHHHhhcC--CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEEEEeChh
Q 010098 114 PDEEADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAA 191 (518)
Q Consensus 114 ~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~ 191 (518)
...++|+||+|+.... + ..+..+.. +.+.++|..+... .+.+ ++.++++|+.
T Consensus 96 ~~~~~~vi~v~~~~~~--~---~~~~~~~~~~~~v~~~h~~~~~~-------------------~~~~--~~~ii~~S~~ 149 (380)
T PRK15484 96 TITKDSVIVIHNSMKL--Y---RQIRERAPQAKLVMHMHNAFEPE-------------------LLDK--NAKIIVPSQF 149 (380)
T ss_pred CCCCCcEEEEeCcHHh--H---HHHHhhCCCCCEEEEEecccChh-------------------Hhcc--CCEEEEcCHH
Confidence 3466999999986543 2 22444433 7888999543211 1112 5999999988
Q ss_pred hhccC-----C-CceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEE
Q 010098 192 TQEYP-----N-SIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDL 265 (518)
Q Consensus 192 ~~~~~-----~-~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i 265 (518)
.++.. . +..+.++|+|.+.|.+......+...+.+.+.++++|+||+.+.||++.|++|+.++.++.|+++|++
T Consensus 150 ~~~~~~~~~~~~~i~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvi 229 (380)
T PRK15484 150 LKKFYEERLPNADISIVPNGFCLETYQSNPQPNLRQQLNISPDETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVV 229 (380)
T ss_pred HHHHHHhhCCCCCEEEecCCCCHHHcCCcchHHHHHHhCCCCCCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEE
Confidence 87742 2 23345579998777654444344555666567889999999999999999999999998899999999
Q ss_pred EeCCCCh---------HHHHHHHHHcCCeEEEeCCC--CChHHHHhhcCeeEecCC-CCCCchHHHHHHHcCCeEEeeCC
Q 010098 266 YGNGEDF---------DQIQRAAKKLKLVVRVYPGR--DHADPIFHDYKVFLNPST-TDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 266 vG~g~~~---------~~l~~~~~~~~l~v~~~~~~--~~~~~l~~~adv~v~pS~-~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
+|+|+.. +.+++++++++..+.+.|.. +++.++|+.||++|+||. .|+||++++||||||+|||+|+.
T Consensus 230 vG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~ 309 (380)
T PRK15484 230 VGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTK 309 (380)
T ss_pred EeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCC
Confidence 9987631 35666777778778888865 467799999999999997 59999999999999999999999
Q ss_pred CC-ccccccCCcEEe-e--CCHHHHHHHHHHHHhCCCC-CCChHHH----hcCCHHHHHHHHHHHHHh
Q 010098 334 PS-NDFFKQFPNCRT-Y--DGRNGFVEATLKALAEEPA-QPTDAQT----HQLSWESATERFLQVAEL 392 (518)
Q Consensus 334 g~-~e~i~~~~~g~~-~--~d~~~l~~~i~~ll~~~~~-~l~~~~~----~~~sw~~~~~~~~~~y~~ 392 (518)
|+ .|++.++.+|++ + .|+++++++|.++++|++. +++++++ ++|||+.+++++++.|+.
T Consensus 310 gg~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d~~~~~~~~~ar~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 310 GGITEFVLEGITGYHLAEPMTSDSIISDINRTLADPELTQIAEQAKDFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred CCcHhhcccCCceEEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 98 999999999984 3 3999999999999999876 7777776 789999999999999974
No 35
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=100.00 E-value=3e-31 Score=266.96 Aligned_cols=352 Identities=19% Similarity=0.149 Sum_probs=250.6
Q ss_pred EEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCCC
Q 010098 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 86 (518)
Q Consensus 7 rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (518)
||++++..+.|..+|.+.....+++.|.+.| |+|+++++............ .. .. ...
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g-~~v~i~~~~~~~~~~~~~~~-----~~-~~------------~~~--- 58 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARG-HEVTVLTPGDGGLPDEEEVG-----GI-VV------------VRP--- 58 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcC-ceEEEEecCCCCCCceeeec-----Cc-ce------------ecC---
Confidence 6999999998887888889999999999987 99999988332111100000 00 00 000
Q ss_pred CcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHH
Q 010098 87 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRL 165 (518)
Q Consensus 87 ~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~ 165 (518)
..................+...+++.+||+||++++...... ....+..+ |++.++|+......... ...
T Consensus 59 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~---~~~~~~~~~~~i~~~h~~~~~~~~~~--~~~ 129 (374)
T cd03801 59 ----PPLLRVRRLLLLLLLALRLRRLLRRERFDVVHAHDWLALLAA---ALAARLLGIPLVLTVHGLEFGRPGNE--LGL 129 (374)
T ss_pred ----CcccccchhHHHHHHHHHHHHHhhhcCCcEEEEechhHHHHH---HHHHHhcCCcEEEEeccchhhccccc--hhH
Confidence 000000000111111334667788889999999998777433 12334434 89999997755432211 111
Q ss_pred HHHHHHHHHHHHhhhhccEEEEeChhhhccC--------CCceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEe
Q 010098 166 QAFLLEFVNSWLARVHCHKVIRLSAATQEYP--------NSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGR 237 (518)
Q Consensus 166 ~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~--------~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr 237 (518)
.............+. +|.+++.|+..++.. .+..+..+|++...+.+.. ...........+.+.++|+|+
T Consensus 130 ~~~~~~~~~~~~~~~-~d~~i~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~g~ 207 (374)
T cd03801 130 LLKLARALERRALRR-ADRIIAVSEATREELRELGGVPPEKITVIPNGVDTERFRPAP-RAARRRLGIPEDEPVILFVGR 207 (374)
T ss_pred HHHHHHHHHHHHHHh-CCEEEEecHHHHHHHHhcCCCCCCcEEEecCcccccccCccc-hHHHhhcCCcCCCeEEEEecc
Confidence 222333333333333 799999998777632 1334445688887765433 222223334455788999999
Q ss_pred ecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCe--EEEeCCC--CChHHHHhhcCeeEecCCCCC
Q 010098 238 MVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGR--DHADPIFHDYKVFLNPSTTDV 313 (518)
Q Consensus 238 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~--v~~~~~~--~~~~~l~~~adv~v~pS~~E~ 313 (518)
+...||++.+++++..+.+..++++|+++|+++..+.+++.+++++.. +.+.+.. ++..++|+.||++++|+..|+
T Consensus 208 ~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~ 287 (374)
T cd03801 208 LVPRKGVDLLLEALAKLRKEYPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEG 287 (374)
T ss_pred hhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhcc
Confidence 999999999999999998888899999999888888888887776654 6667765 778899999999999999999
Q ss_pred CchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC--CCChHHH----hcCCHHHHHH
Q 010098 314 VCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT----HQLSWESATE 384 (518)
Q Consensus 314 ~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~--~l~~~~~----~~~sw~~~~~ 384 (518)
+|++++|||+||+|||+++.++ .+++.++.+|++++ |+++++++|.+++++++. +++++++ +.|+|+..++
T Consensus 288 ~~~~~~Ea~~~g~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (374)
T cd03801 288 FGLVLLEAMAAGLPVVASDVGGIPEVVEDGETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAARERVAERFSWDRVAA 367 (374)
T ss_pred ccchHHHHHHcCCcEEEeCCCChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999999987 99999899999975 689999999999999875 6666655 8999999999
Q ss_pred HHHHHHH
Q 010098 385 RFLQVAE 391 (518)
Q Consensus 385 ~~~~~y~ 391 (518)
++.++|+
T Consensus 368 ~~~~~~~ 374 (374)
T cd03801 368 RTEEVYY 374 (374)
T ss_pred HHHHhhC
Confidence 9999874
No 36
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=100.00 E-value=2.2e-31 Score=266.27 Aligned_cols=331 Identities=16% Similarity=0.155 Sum_probs=235.1
Q ss_pred EEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCCC
Q 010098 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 86 (518)
Q Consensus 7 rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (518)
||++++..+.| .+|.+.....++++|.+.| |+|++++..... ......++++.+.. ..
T Consensus 1 kI~i~~~~~~~-~gG~~~~~~~l~~~L~~~g-~~v~v~~~~~~~-~~~~~~~~~~~~~~---------------~~---- 58 (348)
T cd03820 1 KILFVIPSLGN-AGGAERVLSNLANALAEKG-HEVTIISLDKGE-PPFYELDPKIKVID---------------LG---- 58 (348)
T ss_pred CeEEEeccccC-CCChHHHHHHHHHHHHhCC-CeEEEEecCCCC-CCccccCCccceee---------------cc----
Confidence 68999998876 7887788888999999888 999999883321 00000011110000 00
Q ss_pred CcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcCCEEEEEeCChhhhhhhhcchHHH
Q 010098 87 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRLQ 166 (518)
Q Consensus 87 ~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~ 166 (518)
.... ............+.+++++.+||+||++.+....+. ..+..+..|++.+.|.........
T Consensus 59 ----~~~~--~~~~~~~~~~~~~~~~l~~~~~d~i~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~------- 122 (348)
T cd03820 59 ----DKRD--SKLLARFKKLRRLRKLLKNNKPDVVISFLTSLLTFL---ASLGLKIVKLIVSEHNSPDAYKKR------- 122 (348)
T ss_pred ----cccc--cchhccccchHHHHHhhcccCCCEEEEcCchHHHHH---HHHhhccccEEEecCCCccchhhh-------
Confidence 0000 000111112445788888899999999998733222 222222137888888665433211
Q ss_pred HHHHHHHHHHHhhhhccEEEEeChhhhcc-----CCCceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEeeccc
Q 010098 167 AFLLEFVNSWLARVHCHKVIRLSAATQEY-----PNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWS 241 (518)
Q Consensus 167 ~~~~~~~~~~~~~~~ad~vi~~S~~~~~~-----~~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~ 241 (518)
.......+...+ .||.+++.|+..+.. ..+..+..+|++...+... .....+.++|+|++.+.
T Consensus 123 -~~~~~~~~~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~----------~~~~~~~i~~~g~~~~~ 190 (348)
T cd03820 123 -LRRLLLRRLLYR-RADAVVVLTEEDRALYYKKFNKNVVVIPNPLPFPPEEPS----------SDLKSKRILAVGRLVPQ 190 (348)
T ss_pred -hHHHHHHHHHHh-cCCEEEEeCHHHHHHhhccCCCCeEEecCCcChhhcccc----------CCCCCcEEEEEEeeccc
Confidence 011112233333 379999999887421 2233344467766554322 12336789999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCe--EEEeCCCCChHHHHhhcCeeEecCCCCCCchHHH
Q 010098 242 KGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATA 319 (518)
Q Consensus 242 Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~--v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~l 319 (518)
||++.+++++.++.+..++++|+++|++++.+.+++.++++++. +.+.+..+++.++|+.||++++||..|++|++++
T Consensus 191 K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~i~ps~~e~~~~~~~ 270 (348)
T cd03820 191 KGFDLLIEAWAKIAKKHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGFTKNIEEYYAKASIFVLTSRFEGFPMVLL 270 (348)
T ss_pred cCHHHHHHHHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCEEEeCccccccCHHHH
Confidence 99999999999998888999999999999998898888888765 5566677888899999999999999999999999
Q ss_pred HHHHcCCeEEeeCCCC--ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC--CCChHHH---hcCCHHHHHHHHH
Q 010098 320 EALAMGKIVVCANHPS--NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT---HQLSWESATERFL 387 (518)
Q Consensus 320 EAma~G~PVV~t~~g~--~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~--~l~~~~~---~~~sw~~~~~~~~ 387 (518)
|||+||+|||+++.++ .+++.++.+|++++ |+++++++|.++++|++. +|+++++ ++|+|+++++++.
T Consensus 271 Ea~a~G~Pvi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (348)
T cd03820 271 EAMAFGLPVISFDCPTGPSEIIEDGVNGLLVPNGDVEALAEALLRLMEDEELRKRMGANARESAERFSIENIIKQWE 347 (348)
T ss_pred HHHHcCCCEEEecCCCchHhhhccCcceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCHHHHHHHhc
Confidence 9999999999999764 67777777999875 889999999999999886 7777665 8999999998875
No 37
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=100.00 E-value=1.2e-31 Score=272.51 Aligned_cols=339 Identities=14% Similarity=0.055 Sum_probs=231.1
Q ss_pred EEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCCC
Q 010098 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 86 (518)
Q Consensus 7 rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (518)
||+++++.|+|. +++.+..+++.|. | |+|++++...........-...+........ .....+
T Consensus 1 ~~~~~~~~~~~~---~e~~~~~~~~~l~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------- 63 (367)
T cd05844 1 RVLIFRPLLLAP---SETFVRNQAEALR--R-FRPVYVGGRRLGPAPLGALAVRLADLAGGKA-GLRLGA---------- 63 (367)
T ss_pred CEEEEeCCCCCC---chHHHHHHHHhcc--c-CCcEEEEeeccCCCCCcccceeeeecccchh-HHHHHH----------
Confidence 589999999775 5778888888884 5 7888887622110000000000000000000 000000
Q ss_pred CcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHH
Q 010098 87 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRL 165 (518)
Q Consensus 87 ~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~ 165 (518)
..........+..++++.+||+||+|..... +. +..++++.+ |++.++|+.............
T Consensus 64 ------------~~~~~~~~~~~~~~~~~~~~dvvh~~~~~~~-~~--~~~~~~~~~~p~i~~~h~~~~~~~~~~~~~~- 127 (367)
T cd05844 64 ------------LRLLTGSAPQLRRLLRRHRPDLVHAHFGFDG-VY--ALPLARRLGVPLVVTFHGFDATTSLALLLRS- 127 (367)
T ss_pred ------------HHhccccccHHHHHHHhhCCCEEEeccCchH-HH--HHHHHHHcCCCEEEEEeCccccccchhhccc-
Confidence 0000000122455677889999999976544 22 333556555 999999954222111111000
Q ss_pred HHHHHHHHHHHHhhhhccEEEEeChhhhccCC-------CceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEee
Q 010098 166 QAFLLEFVNSWLARVHCHKVIRLSAATQEYPN-------SIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRM 238 (518)
Q Consensus 166 ~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~-------~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~ 238 (518)
.........+.+.+ .+|.++++|+..++... +..+..+|+|...+.+.. .....+.++|+|++
T Consensus 128 ~~~~~~~~~~~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~i~vi~~g~d~~~~~~~~---------~~~~~~~i~~~G~~ 197 (367)
T cd05844 128 RWALYARRRRRLAR-RAALFIAVSQFIRDRLLALGFPPEKVHVHPIGVDTAKFTPAT---------PARRPPRILFVGRF 197 (367)
T ss_pred chhHHHHHHHHHHH-hcCEEEECCHHHHHHHHHcCCCHHHeEEecCCCCHHhcCCCC---------CCCCCcEEEEEEee
Confidence 01122223333333 37999999988877321 233445688876665321 11235789999999
Q ss_pred cccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCe--EEEeCCC--CChHHHHhhcCeeEecCC----
Q 010098 239 VWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGR--DHADPIFHDYKVFLNPST---- 310 (518)
Q Consensus 239 ~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~--v~~~~~~--~~~~~l~~~adv~v~pS~---- 310 (518)
.+.||++.+++++..+.++.++++|+++|+|+..++++++++++++. +.+.|.. +++.++|+.+|++|+||.
T Consensus 198 ~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~ 277 (367)
T cd05844 198 VEKKGPLLLLEAFARLARRVPEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPS 277 (367)
T ss_pred ccccChHHHHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCC
Confidence 99999999999999998888999999999998888899999987653 6677755 456699999999999996
Q ss_pred --CCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC--CCChHHH----hcCCH
Q 010098 311 --TDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT----HQLSW 379 (518)
Q Consensus 311 --~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~--~l~~~~~----~~~sw 379 (518)
.|+||++++|||+||+|||+++.++ .|++.++.+|++++ |+++++++|.++++|++. +++++++ ++|||
T Consensus 278 ~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~ 357 (367)
T cd05844 278 GDAEGLPVVLLEAQASGVPVVATRHGGIPEAVEDGETGLLVPEGDVAALAAALGRLLADPDLRARMGAAGRRRVEERFDL 357 (367)
T ss_pred CCccCCchHHHHHHHcCCCEEEeCCCCchhheecCCeeEEECCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHCCH
Confidence 5999999999999999999999998 89999999999984 999999999999998875 7777666 78999
Q ss_pred HHHHHHHHH
Q 010098 380 ESATERFLQ 388 (518)
Q Consensus 380 ~~~~~~~~~ 388 (518)
+..++++.+
T Consensus 358 ~~~~~~l~~ 366 (367)
T cd05844 358 RRQTAKLEA 366 (367)
T ss_pred HHHHHHHhc
Confidence 999999875
No 38
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=4.8e-31 Score=267.03 Aligned_cols=336 Identities=15% Similarity=0.111 Sum_probs=235.0
Q ss_pred EEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCCC
Q 010098 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 86 (518)
Q Consensus 7 rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (518)
||+++++.+ ..+|.......+++.|.+.| |+|++++..... .....+ .. . .. .....
T Consensus 1 ~il~~~~~~--~~gG~~~~~~~l~~~L~~~g-~~v~v~~~~~~~--~~~~~~--------~~--~---~~--~~~~~--- 57 (360)
T cd04951 1 KILYVITGL--GLGGAEKQVVDLADQFVAKG-HQVAIISLTGES--EVKPPI--------DA--T---II--LNLNM--- 57 (360)
T ss_pred CeEEEecCC--CCCCHHHHHHHHHHhcccCC-ceEEEEEEeCCC--Cccchh--------hc--c---ce--EEecc---
Confidence 588888765 45787888889999999998 999999862110 000000 00 0 00 00000
Q ss_pred CcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhc--CCEEEEEeCChhhhhhhhcchH
Q 010098 87 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKF--RFVVGIVHTNYLEYVKREKNDR 164 (518)
Q Consensus 87 ~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~--~~~v~~~h~~~~~~~~~~~~~~ 164 (518)
...+. ..+.....+.+++++.+||+||+|.+... ++ +..+.... .+++.+.|+.... +
T Consensus 58 ---~~~~~------~~~~~~~~~~~~~~~~~pdiv~~~~~~~~-~~--~~l~~~~~~~~~~v~~~h~~~~~-------~- 117 (360)
T cd04951 58 ---SKNPL------SFLLALWKLRKILRQFKPDVVHAHMFHAN-IF--ARLLRLFLPSPPLICTAHSKNEG-------G- 117 (360)
T ss_pred ---cccch------hhHHHHHHHHHHHHhcCCCEEEEcccchH-HH--HHHHHhhCCCCcEEEEeeccCch-------h-
Confidence 00000 01111344677788899999999987543 22 11122212 2788888854321 1
Q ss_pred HHHHHHHHHHHHHhhhhccEEEEeChhhhcc-------C-CCceecccccCCCCcCcchh--hHHHhhcCCCCcccEEEE
Q 010098 165 LQAFLLEFVNSWLARVHCHKVIRLSAATQEY-------P-NSIVCNVHGVNPKFLEIGEK--KMEQQQNGNKAFTKGAYY 234 (518)
Q Consensus 165 ~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~-------~-~~~~~~~~GVd~~~~~~~~~--~~~~~~~~~~~~~~~il~ 234 (518)
.......++..+ .++.++++|+...+. + ++....++|+|...+.+... ...+...+..++.++++|
T Consensus 118 ---~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~i~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 193 (360)
T cd04951 118 ---RLRMLAYRLTDF-LSDLTTNVSKEALDYFIASKAFNANKSFVVYNGIDTDRFRKDPARRLKIRNALGVKNDTFVILA 193 (360)
T ss_pred ---HHHHHHHHHHhh-ccCceEEEcHHHHHHHHhccCCCcccEEEEccccchhhcCcchHHHHHHHHHcCcCCCCEEEEE
Confidence 111222223333 368888888665552 2 23344557998876654332 222334555566789999
Q ss_pred EEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCe--EEEeCCCCChHHHHhhcCeeEecCCCC
Q 010098 235 IGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRDHADPIFHDYKVFLNPSTTD 312 (518)
Q Consensus 235 vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~--v~~~~~~~~~~~l~~~adv~v~pS~~E 312 (518)
+|++.+.||++.+++++.++.++.|+++|+++|+|++.+++++.++++++. +.+.|..+++.++|+.||++++||..|
T Consensus 194 ~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~s~~e 273 (360)
T cd04951 194 VGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLFVLSSAWE 273 (360)
T ss_pred EeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccccHHHHHHhhceEEeccccc
Confidence 999999999999999999998888999999999999999999988888764 677888889999999999999999999
Q ss_pred CCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEee--CCHHHHHHHHHHHHhCCCC---CCChH---HHhcCCHHHHH
Q 010098 313 VVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTY--DGRNGFVEATLKALAEEPA---QPTDA---QTHQLSWESAT 383 (518)
Q Consensus 313 ~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~--~d~~~l~~~i~~ll~~~~~---~l~~~---~~~~~sw~~~~ 383 (518)
++|++++|||++|+|||+++.|+ .|++.+ +|+.+ +|+++++++|.+++++++. .++++ ..++|||+.++
T Consensus 274 ~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~ 351 (360)
T cd04951 274 GFGLVVAEAMACELPVVATDAGGVREVVGD--SGLIVPISDPEALANKIDEILKMSGEERDIIGARRERIVKKFSINSIV 351 (360)
T ss_pred CCChHHHHHHHcCCCEEEecCCChhhEecC--CceEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999998 899877 55554 6999999999999965543 34433 22899999999
Q ss_pred HHHHHHHH
Q 010098 384 ERFLQVAE 391 (518)
Q Consensus 384 ~~~~~~y~ 391 (518)
+++.++|+
T Consensus 352 ~~~~~~y~ 359 (360)
T cd04951 352 QQWLTLYT 359 (360)
T ss_pred HHHHHHhh
Confidence 99999996
No 39
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=100.00 E-value=4.7e-31 Score=267.55 Aligned_cols=331 Identities=14% Similarity=0.101 Sum_probs=226.3
Q ss_pred cEEEEEeeccCCcccccccchHHHHHHHHhcC-CeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCC
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDG-ERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFT 84 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~g-g~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (518)
|||+++++++ |..+|++..+..++++|.+.| ||+|+++++... .. . .+.... ......
T Consensus 1 mkI~~~~~~~-~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~--~~-------------~---~~~~~~--~~~~~~ 59 (359)
T PRK09922 1 MKIAFIGEAV-SGFGGMETVISNVINTFEESKINCEMFFFCRNDK--MD-------------K---AWLKEI--KYAQSF 59 (359)
T ss_pred CeeEEecccc-cCCCchhHHHHHHHHHhhhcCcceeEEEEecCCC--CC-------------h---HHHHhc--chhccc
Confidence 7999998765 555888899999999999993 399999987220 00 0 000000 000000
Q ss_pred CCCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC---CEEEEEeCChhhhhhhhc
Q 010098 85 STFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR---FVVGIVHTNYLEYVKREK 161 (518)
Q Consensus 85 ~~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~---~~v~~~h~~~~~~~~~~~ 161 (518)
+...+.+... ......+.+.+++.+||+||++++... ++ +....+..+ +++.+.|.......
T Consensus 60 ~~~~~~~~~~--------~~~~~~l~~~l~~~~~Dii~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~h~~~~~~~---- 124 (359)
T PRK09922 60 SNIKLSFLRR--------AKHVYNFSKWLKETQPDIVICIDVISC-LY--ANKARKKSGKQFKIFSWPHFSLDHKK---- 124 (359)
T ss_pred ccchhhhhcc--------cHHHHHHHHHHHhcCCCEEEEcCHHHH-HH--HHHHHHHhCCCCeEEEEecCcccccc----
Confidence 1111111110 011345778899999999999986544 23 222333333 34555664322110
Q ss_pred chHHHHHHHHHHHHHHhhhhccEEEEeChhhhccCC-------CceecccccCCCCcCcchhhHHHhhcCCCCcccEEEE
Q 010098 162 NDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPN-------SIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYY 234 (518)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~-------~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~ 234 (518)
. . .. ..+ . .||.++++|+..++... +..+..+|+|.+.+..... ...+.+.++|
T Consensus 125 ~-------~-~~-~~~-~-~~d~~i~~S~~~~~~~~~~~~~~~ki~vi~N~id~~~~~~~~~--------~~~~~~~i~~ 185 (359)
T PRK09922 125 H-------A-EC-KKI-T-CADYHLAISSGIKEQMMARGISAQRISVIYNPVEIKTIIIPPP--------ERDKPAVFLY 185 (359)
T ss_pred h-------h-hh-hhh-h-cCCEEEEcCHHHHHHHHHcCCCHHHEEEEcCCCCHHHccCCCc--------ccCCCcEEEE
Confidence 0 0 00 111 2 37999999988876321 1233446787543221100 1123678999
Q ss_pred EEeecc--cCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCe--EEEeCCCCC----hHHHHhhcCeeE
Q 010098 235 IGRMVW--SKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRDH----ADPIFHDYKVFL 306 (518)
Q Consensus 235 vGr~~~--~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~--v~~~~~~~~----~~~l~~~adv~v 306 (518)
+||+.+ .||++.+++++.++. ++++|+++|+|++.+++++.++++++. +.+.|..++ ..++|+.+|++|
T Consensus 186 ~Grl~~~~~k~~~~l~~a~~~~~---~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v 262 (359)
T PRK09922 186 VGRLKFEGQKNVKELFDGLSQTT---GEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALL 262 (359)
T ss_pred EEEEecccCcCHHHHHHHHHhhC---CCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEE
Confidence 999974 599999999998764 379999999999999999999988875 667776554 346777899999
Q ss_pred ecCCCCCCchHHHHHHHcCCeEEeeC-CCC-ccccccCCcEEee--CCHHHHHHHHHHHHhCCCCCCChHH---HhcCCH
Q 010098 307 NPSTTDVVCTATAEALAMGKIVVCAN-HPS-NDFFKQFPNCRTY--DGRNGFVEATLKALAEEPAQPTDAQ---THQLSW 379 (518)
Q Consensus 307 ~pS~~E~~~~~~lEAma~G~PVV~t~-~g~-~e~i~~~~~g~~~--~d~~~l~~~i~~ll~~~~~~l~~~~---~~~~sw 379 (518)
+||..|+||++++||||||+|||+++ .++ .|++.++.+|+++ +|+++++++|.+++++++.+...+. .++|+-
T Consensus 263 ~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 342 (359)
T PRK09922 263 LTSKFEGFPMTLLEAMSYGIPCISSDCMSGPRDIIKPGLNGELYTPGNIDEFVGKLNKVISGEVKYQHDAIPNSIERFYE 342 (359)
T ss_pred ECCcccCcChHHHHHHHcCCCEEEeCCCCChHHHccCCCceEEECCCCHHHHHHHHHHHHhCcccCCHHHHHHHHHHhhH
Confidence 99999999999999999999999999 777 8999999999997 4999999999999999986422222 288999
Q ss_pred HHHHHHHHHHHHhcC
Q 010098 380 ESATERFLQVAELVG 394 (518)
Q Consensus 380 ~~~~~~~~~~y~~~~ 394 (518)
+..++++.++|+...
T Consensus 343 ~~~~~~~~~~~~~~~ 357 (359)
T PRK09922 343 VLYFKNLNNALFSKL 357 (359)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998543
No 40
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=7.9e-31 Score=265.88 Aligned_cols=342 Identities=14% Similarity=0.101 Sum_probs=221.7
Q ss_pred EEEEEeec-cCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCC
Q 010098 7 HIAIFTTA-SLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTS 85 (518)
Q Consensus 7 rI~ivt~~-~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (518)
||+|++.. ++|..+|++.....++++|.+.| |+|+|+++..........+ +++ ++...+
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g-~~v~v~~~~~~~~~~~~~~-~~i------------------~~~~~~ 60 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARG-HEVTVYCRSPYPKQKETEY-NGV------------------RLIHIP 60 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcC-CCEEEEEccCCCCCccccc-CCc------------------eEEEcC
Confidence 68999765 56677888888899999999998 9999998832110000000 000 001000
Q ss_pred CCcccccCcccccccccccchhhHHhhc-CCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcch
Q 010098 86 TFDTRFYPGKFAADKKSILAVGDITEII-PDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKND 163 (518)
Q Consensus 86 ~~~i~~~~~~~~~~~~~i~~~~~l~~~i-~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~ 163 (518)
...... .......+..+...+ .+.++|++|...+.... + ..+.++.+ |++.+.|+..... ....
T Consensus 61 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~v~~~h~~~~~~---~~~~ 126 (363)
T cd04955 61 APEIGG-------LGTIIYDILAILHALFVKRDIDHVHALGPAIAP-F---LPLLRLKGKKVVVNMDGLEWKR---AKWG 126 (363)
T ss_pred CCCccc-------hhhhHHHHHHHHHHHhccCCeEEEEecCccHHH-H---HHHHHhcCCCEEEEccCcceee---cccc
Confidence 000000 000000111122222 34556777666655421 1 22333334 8898988642111 1111
Q ss_pred HHHHHHHHHHHHHHhhhhccEEEEeChhhhccC-----CCceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEee
Q 010098 164 RLQAFLLEFVNSWLARVHCHKVIRLSAATQEYP-----NSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRM 238 (518)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~-----~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~ 238 (518)
.....+.+...++..+. +|.++++|+..++.. .......+|+|...+.+ ........+..+ ...++|+|++
T Consensus 127 ~~~~~~~~~~~~~~~~~-ad~ii~~s~~~~~~~~~~~~~~~~~i~ngv~~~~~~~--~~~~~~~~~~~~-~~~i~~~G~~ 202 (363)
T cd04955 127 RPAKRYLKFGEKLAVKF-ADRLIADSPGIKEYLKEKYGRDSTYIPYGADHVVSSE--EDEILKKYGLEP-GRYYLLVGRI 202 (363)
T ss_pred cchhHHHHHHHHHHHhh-ccEEEeCCHHHHHHHHHhcCCCCeeeCCCcChhhcch--hhhhHHhcCCCC-CcEEEEEecc
Confidence 11222333334444443 899999998877632 23345557888876543 111122233333 4568899999
Q ss_pred cccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHH-HcCC--eEEEeCCCCC--hHHHHhhcCeeEecCCC-C
Q 010098 239 VWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAK-KLKL--VVRVYPGRDH--ADPIFHDYKVFLNPSTT-D 312 (518)
Q Consensus 239 ~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~-~~~l--~v~~~~~~~~--~~~l~~~adv~v~pS~~-E 312 (518)
.+.||++.+++++.++.. +++|+++|+|+....+.+.++ .++. .+++.|...+ ..++|+.+|++++||.. |
T Consensus 203 ~~~Kg~~~li~a~~~l~~---~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e 279 (363)
T cd04955 203 VPENNIDDLIEAFSKSNS---GKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHGHSVG 279 (363)
T ss_pred cccCCHHHHHHHHHhhcc---CceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeCCccCC
Confidence 999999999999988754 799999999876655555544 3443 4777775544 44899999999999988 9
Q ss_pred CCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeCCHHHHHHHHHHHHhCCCC--CCChHHH----hcCCHHHHHHH
Q 010098 313 VVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQT----HQLSWESATER 385 (518)
Q Consensus 313 ~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~~~--~l~~~~~----~~~sw~~~~~~ 385 (518)
+||++++|||+||+|||+|+.|+ .|++.+ +|+++++.+.++++|.+++++++. +++++++ ++|||+.++++
T Consensus 280 ~~~~~~~EAma~G~PvI~s~~~~~~e~~~~--~g~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~ 357 (363)
T cd04955 280 GTNPSLLEAMAYGCPVLASDNPFNREVLGD--KAIYFKVGDDLASLLEELEADPEEVSAMAKAARERIREKYTWEKIADQ 357 (363)
T ss_pred CCChHHHHHHHcCCCEEEecCCccceeecC--CeeEecCchHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999998 888866 677765444499999999999865 7777766 57999999999
Q ss_pred HHHHHH
Q 010098 386 FLQVAE 391 (518)
Q Consensus 386 ~~~~y~ 391 (518)
++++|+
T Consensus 358 ~~~~y~ 363 (363)
T cd04955 358 YEELYK 363 (363)
T ss_pred HHHHhC
Confidence 999985
No 41
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.98 E-value=7.9e-31 Score=264.33 Aligned_cols=342 Identities=15% Similarity=0.069 Sum_probs=241.4
Q ss_pred EEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCCC
Q 010098 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 86 (518)
Q Consensus 7 rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (518)
||++++..+.+ +|.+.....+++.|.+.| |+|.+++..... . + . ..... ..+..
T Consensus 1 ~i~~i~~~~~~--gG~~~~~~~l~~~l~~~~-~~v~~~~~~~~~--~---~---------~---~~~~~---~~i~v--- 54 (365)
T cd03807 1 KVLHVITGLDV--GGAERMLVRLLKGLDRDR-FEHVVISLTDRG--E---L---------G---EELEE---AGVPV--- 54 (365)
T ss_pred CeEEEEeeccC--ccHHHHHHHHHHHhhhcc-ceEEEEecCcch--h---h---------h---HHHHh---cCCeE---
Confidence 68999998865 888888899999999888 999999872100 0 0 0 00000 00000
Q ss_pred CcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHh--hcCCEEEEEeCChhhhhhhhcchH
Q 010098 87 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKA--KFRFVVGIVHTNYLEYVKREKNDR 164 (518)
Q Consensus 87 ~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~--~~~~~v~~~h~~~~~~~~~~~~~~ 164 (518)
..+.. +. .......+..+.+++++.+||+||++......+. ..... ...+++.+.|....... .
T Consensus 55 ~~~~~-~~----~~~~~~~~~~~~~~~~~~~~div~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~------~ 120 (365)
T cd03807 55 YCLGK-RP----GRPDPGALLRLYKLIRRLRPDVVHTWMYHADLYG---GLAARLAGVPPVIWGIRHSDLDLG------K 120 (365)
T ss_pred EEEec-cc----ccccHHHHHHHHHHHHhhCCCEEEeccccccHHH---HHHHHhcCCCcEEEEecCCccccc------c
Confidence 00000 00 0111112445777788899999999876543211 11222 22378888886543321 1
Q ss_pred HHHHHHHHHHHHHhhhhccEEEEeChhhhccC------C-CceecccccCCCCcCcchhhH--HHhhcCCCCcccEEEEE
Q 010098 165 LQAFLLEFVNSWLARVHCHKVIRLSAATQEYP------N-SIVCNVHGVNPKFLEIGEKKM--EQQQNGNKAFTKGAYYI 235 (518)
Q Consensus 165 ~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~------~-~~~~~~~GVd~~~~~~~~~~~--~~~~~~~~~~~~~il~v 235 (518)
........+...+.+. +|.+++.|+..++.. . +..+..+|+|...+.+..... .+.+.+.+++.+.++|+
T Consensus 121 ~~~~~~~~~~~~~~~~-~~~~i~~s~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 199 (365)
T cd03807 121 KSTRLVARLRRLLSSF-IPLIVANSAAAAEYHQAIGYPPKKIVVIPNGVDTERFSPDLDARARLREELGLPEDTFLIGIV 199 (365)
T ss_pred hhHhHHHHHHHHhccc-cCeEEeccHHHHHHHHHcCCChhheeEeCCCcCHHhcCCcccchHHHHHhcCCCCCCeEEEEe
Confidence 1122333334444443 799899997776632 1 223445688876655433221 22345556667889999
Q ss_pred EeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHH-HcCCe--EEEeCCCCChHHHHhhcCeeEecCCCC
Q 010098 236 GRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAK-KLKLV--VRVYPGRDHADPIFHDYKVFLNPSTTD 312 (518)
Q Consensus 236 Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~-~~~l~--v~~~~~~~~~~~l~~~adv~v~pS~~E 312 (518)
|++.+.||++.+++++..+.++.++++|+++|.++.....+.... ++++. +.+.+..++..++|+.||++++||..|
T Consensus 200 G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~e 279 (365)
T cd03807 200 ARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGERSDVPALLNALDVFVLSSLSE 279 (365)
T ss_pred cccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccccccHHHHHHhCCEEEeCCccc
Confidence 999999999999999999988888999999999988777777766 66654 566777889999999999999999999
Q ss_pred CCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEee--CCHHHHHHHHHHHHhCCCC--CCChHHH----hcCCHHHHH
Q 010098 313 VVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTY--DGRNGFVEATLKALAEEPA--QPTDAQT----HQLSWESAT 383 (518)
Q Consensus 313 ~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~--~d~~~l~~~i~~ll~~~~~--~l~~~~~----~~~sw~~~~ 383 (518)
++|++++|||+||+|||+++.++ .|++.+ +|+++ +|+++++++|.+++++++. +++++++ ++|||+..+
T Consensus 280 ~~~~~~~Ea~a~g~PvI~~~~~~~~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (365)
T cd03807 280 GFPNVLLEAMACGLPVVATDVGDNAELVGD--TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIEENFSIEAMV 357 (365)
T ss_pred cCCcHHHHHHhcCCCEEEcCCCChHHHhhc--CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999998 888877 67765 4999999999999999865 6666665 789999999
Q ss_pred HHHHHHHH
Q 010098 384 ERFLQVAE 391 (518)
Q Consensus 384 ~~~~~~y~ 391 (518)
+++.++|+
T Consensus 358 ~~~~~~y~ 365 (365)
T cd03807 358 EAYEELYR 365 (365)
T ss_pred HHHHHHhC
Confidence 99999985
No 42
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.98 E-value=7e-31 Score=265.54 Aligned_cols=331 Identities=17% Similarity=0.142 Sum_probs=227.7
Q ss_pred EEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCCC
Q 010098 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 86 (518)
Q Consensus 7 rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (518)
||++++..|+|..+|.+.....++++|.+.| |+|+++++... ... . .. . ... ......+.
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g-~~v~v~~~~~~--~~~----------~-~~--~--~~~--~~~~~~~~ 60 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARG-IEVAVLCASPE--PKG----------R-DE--E--RNG--HRVIRAPS 60 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCC-CceEEEecCCC--Ccc----------h-hh--h--ccC--ceEEEeec
Confidence 6999999999988998888899999999998 99999987221 000 0 00 0 000 00000000
Q ss_pred C-cccccCcccccccccccchhhHHh-hcCCCCCcEEEEcCCchhhhhhchHHHHhhcCCEEEEEeCChhhhhhhhcchH
Q 010098 87 F-DTRFYPGKFAADKKSILAVGDITE-IIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDR 164 (518)
Q Consensus 87 ~-~i~~~~~~~~~~~~~i~~~~~l~~-~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~ 164 (518)
. .....+ ........ .+...+||+||++.+.....+ ...+.....+.+.++|+......
T Consensus 61 ~~~~~~~~----------~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~--~~~~~~~~~~~i~~~h~~~~~~~------- 121 (357)
T cd03795 61 LLNVASTP----------FSPSFFKQLKKLAKKADVIHLHFPNPLADL--ALLLLPRKKPVVVHWHSDIVKQK------- 121 (357)
T ss_pred cccccccc----------ccHHHHHHHHhcCCCCCEEEEecCcchHHH--HHHHhccCceEEEEEcChhhccc-------
Confidence 0 000000 00000111 155778999999987765333 12222222378889996532210
Q ss_pred HHHHHHHHHHHHHhhhhccEEEEeChhhhcc-------CCCceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEe
Q 010098 165 LQAFLLEFVNSWLARVHCHKVIRLSAATQEY-------PNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGR 237 (518)
Q Consensus 165 ~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~-------~~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr 237 (518)
........+.++..+. ||.+++.|+...+. ..+....++|+|...+.+...... .......+.+.++|+|+
T Consensus 122 ~~~~~~~~~~~~~~~~-~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~gi~~~~~~~~~~~~~-~~~~~~~~~~~i~~~G~ 199 (357)
T cd03795 122 LLLKLYRPLQRRFLRR-ADAIVATSPNYAETSPVLRRFRDKVRVIPLGLDPARYPRPDALEE-AIWRRAAGRPFFLFVGR 199 (357)
T ss_pred hhhhhhhHHHHHHHHh-cCEEEeCcHHHHHHHHHhcCCccceEEecCCCChhhcCCcchhhh-HhhcCCCCCcEEEEecc
Confidence 0112222333333333 79999999776652 233345557999877665432211 11223445789999999
Q ss_pred ecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCe--EEEeCCCCC--hHHHHhhcCeeEecCC--C
Q 010098 238 MVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRDH--ADPIFHDYKVFLNPST--T 311 (518)
Q Consensus 238 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~--v~~~~~~~~--~~~l~~~adv~v~pS~--~ 311 (518)
+.+.||++.+++++.++. +++|+++|+|+..+.+++.+++++.. +.+.|..++ ..++|+.||++++||. .
T Consensus 200 ~~~~K~~~~li~a~~~l~----~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~ 275 (357)
T cd03795 200 LVYYKGLDVLLEAAAALP----DAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERS 275 (357)
T ss_pred cccccCHHHHHHHHHhcc----CcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccc
Confidence 999999999999998876 79999999999888899888777654 667776554 5599999999999985 6
Q ss_pred CCCchHHHHHHHcCCeEEeeCCCC-cccccc-CCcEEee--CCHHHHHHHHHHHHhCCCC--CCChHHH----hcCCHHH
Q 010098 312 DVVCTATAEALAMGKIVVCANHPS-NDFFKQ-FPNCRTY--DGRNGFVEATLKALAEEPA--QPTDAQT----HQLSWES 381 (518)
Q Consensus 312 E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~-~~~g~~~--~d~~~l~~~i~~ll~~~~~--~l~~~~~----~~~sw~~ 381 (518)
|+||++++|||+||+|||+++.++ .+.+.+ +.+|+++ +|+++++++|.++++|++. .|+++++ ++|||+.
T Consensus 276 e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~ 355 (357)
T cd03795 276 EAFGIVLLEAMAFGKPVISTEIGTGGSYVNLHGVTGLVVPPGDPAALAEAIRRLLEDPELRERLGEAARERAEEEFTADR 355 (357)
T ss_pred cccchHHHHHHHcCCCEEecCCCCchhHHhhCCCceEEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHhcchHh
Confidence 999999999999999999999987 777775 8999987 4899999999999999876 7887777 7899987
Q ss_pred H
Q 010098 382 A 382 (518)
Q Consensus 382 ~ 382 (518)
+
T Consensus 356 ~ 356 (357)
T cd03795 356 M 356 (357)
T ss_pred h
Confidence 6
No 43
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.98 E-value=1e-30 Score=264.65 Aligned_cols=337 Identities=18% Similarity=0.090 Sum_probs=230.9
Q ss_pred EEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCCC
Q 010098 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 86 (518)
Q Consensus 7 rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (518)
||+||++. +|..+|.+.....+++.|.+.| |+|++++.... ... .. .... . ....
T Consensus 1 kI~~v~~~-~~~~gG~~~~~~~l~~~L~~~g-~~v~v~~~~~~--~~~-~~-------~~~~--~-------~~~~---- 55 (366)
T cd03822 1 RIALVSPY-PPRKCGIATFTTDLVNALSARG-PDVLVVSVAAL--YPS-LL-------YGGE--Q-------EVVR---- 55 (366)
T ss_pred CeEEecCC-CCCCCcHHHHHHHHHHHhhhcC-CeEEEEEeecc--cCc-cc-------CCCc--c-------ccee----
Confidence 68999764 5878999999999999999998 99999976221 000 00 0000 0 0000
Q ss_pred CcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchh--hhh-hchHHHHhhcC-CEEEEEeCChhhhhhhhcc
Q 010098 87 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHL--TWF-HHGKRWKAKFR-FVVGIVHTNYLEYVKREKN 162 (518)
Q Consensus 87 ~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~--~~~-~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~ 162 (518)
... ......+..+.+.+++.+||+||++..... ... .......+..+ |+|.++|+......
T Consensus 56 -~~~---------~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~----- 120 (366)
T cd03822 56 -VIV---------LDNPLDYRRAARAIRLSGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEP----- 120 (366)
T ss_pred -eee---------cCCchhHHHHHHHHhhcCCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCcccc-----
Confidence 000 000111334667788889999999873221 111 00111112234 89999996511110
Q ss_pred hHHHHHHHHHHHHHHhhhhccEEEEeC-hhhhccC-----CCceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEE
Q 010098 163 DRLQAFLLEFVNSWLARVHCHKVIRLS-AATQEYP-----NSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIG 236 (518)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~ad~vi~~S-~~~~~~~-----~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vG 236 (518)
. .....+.+.+.+ .+|.+++.| +..+++. .+..+..+|++...+...... .......+.+.++|+|
T Consensus 121 ~----~~~~~~~~~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~G 192 (366)
T cd03822 121 R----PGDRALLRLLLR-RADAVIVMSSELLRALLLRAYPEKIAVIPHGVPDPPAEPPESL---KALGGLDGRPVLLTFG 192 (366)
T ss_pred c----hhhhHHHHHHHh-cCCEEEEeeHHHHHHHHhhcCCCcEEEeCCCCcCcccCCchhh---HhhcCCCCCeEEEEEe
Confidence 0 111122222233 379999996 5555532 344455578887665433221 2222344578899999
Q ss_pred eecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHH-----HHHHHcCCe--EEEeCC---CCChHHHHhhcCeeE
Q 010098 237 RMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQ-----RAAKKLKLV--VRVYPG---RDHADPIFHDYKVFL 306 (518)
Q Consensus 237 r~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~-----~~~~~~~l~--v~~~~~---~~~~~~l~~~adv~v 306 (518)
++.+.||++.+++++.++.++.++++|+++|++....... ++++++++. +.+.++ .++..++|+.||+++
T Consensus 193 ~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v 272 (366)
T cd03822 193 LLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVV 272 (366)
T ss_pred eccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEE
Confidence 9999999999999999999888999999999976543322 125666654 566766 446679999999999
Q ss_pred ecCCCC--CCchHHHHHHHcCCeEEeeCCCCccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC--CCChHHH---hcC
Q 010098 307 NPSTTD--VVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT---HQL 377 (518)
Q Consensus 307 ~pS~~E--~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~--~l~~~~~---~~~ 377 (518)
+||..| ++|++++|||+||+|||+++.++.+.+.++.+|++++ |+++++++|.+++++++. +|+++++ ++|
T Consensus 273 ~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~~~~i~~~~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 352 (366)
T cd03822 273 LPYRSADQTQSGVLAYAIGFGKPVISTPVGHAEEVLDGGTGLLVPPGDPAALAEAIRRLLADPELAQALRARAREYARAM 352 (366)
T ss_pred ecccccccccchHHHHHHHcCCCEEecCCCChheeeeCCCcEEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhC
Confidence 999999 9999999999999999999999877777788898874 899999999999998765 7888776 569
Q ss_pred CHHHHHHHHHHHHH
Q 010098 378 SWESATERFLQVAE 391 (518)
Q Consensus 378 sw~~~~~~~~~~y~ 391 (518)
||+.+++++.++|+
T Consensus 353 s~~~~~~~~~~~~~ 366 (366)
T cd03822 353 SWERVAERYLRLLA 366 (366)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999999884
No 44
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.98 E-value=9.4e-31 Score=266.15 Aligned_cols=364 Identities=17% Similarity=0.153 Sum_probs=238.8
Q ss_pred EEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCCC
Q 010098 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 86 (518)
Q Consensus 7 rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (518)
||+++++.+.|..+|.+.....++++|.+.| |+|+++++...........+ ... .. ...+ .+...+.
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g-~~v~~~~~~~~~~~~~~~~~--~~~---~~-~~~~------~~~~~~~ 67 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRG-HEVTVITGSPNYPSGKIYKG--YKR---EE-VDGV------RVHRVPL 67 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCC-ceEEEEecCCCccccccccc--ceE---Ee-cCCe------EEEEEec
Confidence 6999999998888999999999999999998 99999987321111100000 000 00 0000 0000000
Q ss_pred CcccccCcccccccccc-cchhhHHhhc-CCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhc--
Q 010098 87 FDTRFYPGKFAADKKSI-LAVGDITEII-PDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREK-- 161 (518)
Q Consensus 87 ~~i~~~~~~~~~~~~~i-~~~~~l~~~i-~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~-- 161 (518)
..... ...+....... ..+....... +..+||+||++++.....+ .+....+..+ |++.++|+.++.......
T Consensus 68 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~-~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~ 145 (394)
T cd03794 68 PPYKK-NGLLKRLLNYLSFALSALLALLKRRRRPDVIIATSPPLLIAL-AALLLARLKGAPFVLEVRDLWPESAVALGLL 145 (394)
T ss_pred CCCCc-cchHHHHHhhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHH-HHHHHHHhcCCCEEEEehhhcchhHHHccCc
Confidence 00000 00000000000 0011122222 4778999999984433222 1233344434 899999976654432211
Q ss_pred -chHHHHHHHHHHHHHHhhhhccEEEEeChhhhccC-------CCceecccccCCCCcCcchhhHHHhhcCCCCcccEEE
Q 010098 162 -NDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYP-------NSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAY 233 (518)
Q Consensus 162 -~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~-------~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il 233 (518)
.......+...+.++..+ .+|.+++.|+..++.. .+..+..+|++...+.+..............+...++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~-~~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (394)
T cd03794 146 KNGSLLYRLLRKLERLIYR-RADAIVVISPGMREYLVRRGVPPEKISVIPNGVDLELFKPPPADESLRKELGLDDKFVVL 224 (394)
T ss_pred cccchHHHHHHHHHHHHHh-cCCEEEEECHHHHHHHHhcCCCcCceEEcCCCCCHHHcCCccchhhhhhccCCCCcEEEE
Confidence 111111233333333333 3899999998777743 2233444688776655433221122223344578899
Q ss_pred EEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCe-EEEeCCC--CChHHHHhhcCeeEecCC
Q 010098 234 YIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV-VRVYPGR--DHADPIFHDYKVFLNPST 310 (518)
Q Consensus 234 ~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~-v~~~~~~--~~~~~l~~~adv~v~pS~ 310 (518)
|+|++.+.||++.+++++.++.+. ++++|+++|+|+..+.+++.+...++. +.+++.. ++..++|+.||++++||.
T Consensus 225 ~~G~~~~~k~~~~l~~~~~~l~~~-~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~ 303 (394)
T cd03794 225 YAGNIGRAQGLDTLLEAAALLKDR-PDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADVGLVPLK 303 (394)
T ss_pred EecCcccccCHHHHHHHHHHHhhc-CCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCeeEEecc
Confidence 999999999999999999999877 889999999999888888876666654 6677744 466699999999999998
Q ss_pred CCCC-----chHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC--CCChHHH----hc
Q 010098 311 TDVV-----CTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT----HQ 376 (518)
Q Consensus 311 ~E~~-----~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~--~l~~~~~----~~ 376 (518)
.|++ |++++|||+||+|||+++.++ .+++.++.+|++++ |+++++++|.++++|++. .++++++ ++
T Consensus 304 ~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 383 (394)
T cd03794 304 PGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEEAGAGLVVPPGDPEALAAAILELLDDPEERAEMGENGRRYVEEK 383 (394)
T ss_pred CcccccccCchHHHHHHHCCCcEEEecCCCchhhhccCCcceEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 7765 889999999999999999998 88888888898874 899999999999988876 7777766 59
Q ss_pred CCHHHHHHHHH
Q 010098 377 LSWESATERFL 387 (518)
Q Consensus 377 ~sw~~~~~~~~ 387 (518)
|||+.++++++
T Consensus 384 ~s~~~~~~~~~ 394 (394)
T cd03794 384 FSREKLAERLL 394 (394)
T ss_pred hcHHHHHHhcC
Confidence 99999998763
No 45
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.98 E-value=2.7e-30 Score=265.59 Aligned_cols=361 Identities=15% Similarity=0.078 Sum_probs=227.7
Q ss_pred EEEEeecc-CCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccc---c--CCCCcccCChhHHHHHHHHhhhccc
Q 010098 8 IAIFTTAS-LPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQ---V--YPGNITFASPKEQEAYVRWWLEDRT 81 (518)
Q Consensus 8 I~ivt~~~-~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~---~--~p~~~~~~~~~~~~~~~~~~~~~~~ 81 (518)
|+++|..+ +|...|+.++++.++++|++. |+|+++|...+..+... . +.+.+............+.. .
T Consensus 1 iL~~~~~~P~P~~~G~~~r~~~~~~~L~~~--~~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~ 74 (397)
T TIGR03087 1 ILYLVHRIPYPPNKGDKIRSFHLLRHLAAR--HRVHLGTFVDDPEDWQYAAALRPLCEEVCVVPLDPRVARLRSL----L 74 (397)
T ss_pred CeeecCCCCCCCCCCCcEeHHHHHHHHHhc--CcEEEEEeCCCcccHHHHHHHHHHhheeEEeecCcHHHHHHHH----h
Confidence 57787655 355678899999999999773 89999987321111100 0 00000000000000000000 0
Q ss_pred CCCCCCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcCCEEEEEeCChhhh-hhhh
Q 010098 82 GFTSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEY-VKRE 160 (518)
Q Consensus 82 ~~~~~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~-~~~~ 160 (518)
...... |.... ..........+.+.+++.++|+||+++....... . ......|.|.+.|+..... ....
T Consensus 75 ~l~~~~-----p~~~~-~~~~~~~~~~l~~~~~~~~~D~v~~~~~~~~~~~---~-~~~~~~p~i~~~~d~~~~~~~~~~ 144 (397)
T TIGR03087 75 GLLTGE-----PLSLP-YYRSRRLARWVNALLAAEPVDAIVVFSSAMAQYV---T-PHVRGVPRIVDFVDVDSDKWLQYA 144 (397)
T ss_pred hhcCCC-----CCcch-hhCCHHHHHHHHHHHhhCCCCEEEEeccccceec---c-ccccCCCeEeehhhHHHHHHHHHH
Confidence 000000 00000 0001112345677788899999999976443111 0 0111138888888542211 1110
Q ss_pred c-chHHHH-------HHHHHHHHHHhhhhccEEEEeChhhhccC--------CCceecccccCCCCcCcchhhHHHhhcC
Q 010098 161 K-NDRLQA-------FLLEFVNSWLARVHCHKVIRLSAATQEYP--------NSIVCNVHGVNPKFLEIGEKKMEQQQNG 224 (518)
Q Consensus 161 ~-~~~~~~-------~~~~~~~~~~~~~~ad~vi~~S~~~~~~~--------~~~~~~~~GVd~~~~~~~~~~~~~~~~~ 224 (518)
. ...... .....+.+.+.+ .+|.++++|+..++.. .+..+..+|||.+.|.+.... ...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~e~~~~~-~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipngvd~~~f~~~~~~----~~~ 219 (397)
T TIGR03087 145 RTKRWPLRWIYRREGRLLLAYERAIAA-RFDAATFVSRAEAELFRRLAPEAAGRITAFPNGVDADFFSPDRDY----PNP 219 (397)
T ss_pred hccCcchhHHHHHHHHHHHHHHHHHHh-hCCeEEEcCHHHHHHHHHhCCCCCCCeEEeecccchhhcCCCccc----cCC
Confidence 0 000011 111222333333 3899999998776631 233455679999887653221 111
Q ss_pred CCCcccEEEEEEeecccCCHHHHH----HHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHh
Q 010098 225 NKAFTKGAYYIGRMVWSKGYEELL----GLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH 300 (518)
Q Consensus 225 ~~~~~~~il~vGr~~~~Kg~~~ll----~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~ 300 (518)
...+.+.++|+|++.+.||++.++ +++..+.+..|+++|+|+|+|+.. +++++... .++++.|..+++..+|+
T Consensus 220 ~~~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~~-~~~~l~~~--~~V~~~G~v~~~~~~~~ 296 (397)
T TIGR03087 220 YPPGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKPSP-AVRALAAL--PGVTVTGSVADVRPYLA 296 (397)
T ss_pred CCCCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCChH-HHHHhccC--CCeEEeeecCCHHHHHH
Confidence 223457899999999999999888 566667777899999999998753 44444332 24778888889999999
Q ss_pred hcCeeEecCC-CCCCchHHHHHHHcCCeEEeeCCCCccccccCCcEEee-CCHHHHHHHHHHHHhCCCC--CCChHHH--
Q 010098 301 DYKVFLNPST-TDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTY-DGRNGFVEATLKALAEEPA--QPTDAQT-- 374 (518)
Q Consensus 301 ~adv~v~pS~-~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~-~d~~~l~~~i~~ll~~~~~--~l~~~~~-- 374 (518)
.||++|+||. .||+|++++||||||+|||+|+.++..+...+.+|+++ +|+++++++|.++++|++. +|+++++
T Consensus 297 ~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i~~~~~~g~lv~~~~~~la~ai~~ll~~~~~~~~~~~~ar~~ 376 (397)
T TIGR03087 297 HAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGIDALPGAELLVAADPADFAAAILALLANPAEREELGQAARRR 376 (397)
T ss_pred hCCEEEecccccCCcccHHHHHHHcCCCEEecCcccccccccCCcceEeCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 9999999996 69999999999999999999998654444444566665 6999999999999999875 8888877
Q ss_pred --hcCCHHHHHHHHHHHHHh
Q 010098 375 --HQLSWESATERFLQVAEL 392 (518)
Q Consensus 375 --~~~sw~~~~~~~~~~y~~ 392 (518)
++|||+..++++.++|+.
T Consensus 377 v~~~fsw~~~~~~~~~~l~~ 396 (397)
T TIGR03087 377 VLQHYHWPRNLARLDALLEQ 396 (397)
T ss_pred HHHhCCHHHHHHHHHHHhcC
Confidence 689999999999999864
No 46
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=5.3e-31 Score=276.32 Aligned_cols=266 Identities=15% Similarity=0.159 Sum_probs=205.2
Q ss_pred CCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhh-----hh-cchHHHHHHHHH---HHHHHhhhhccEE
Q 010098 116 EEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVK-----RE-KNDRLQAFLLEF---VNSWLARVHCHKV 185 (518)
Q Consensus 116 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~-----~~-~~~~~~~~~~~~---~~~~~~~~~ad~v 185 (518)
.++|++|+|+....++. +..+++..+ |+|.+.|+.+..... .. ..+..+..+.+. +.+...+ .||.|
T Consensus 172 ~~~dviH~~s~~~~g~~--~~~~~~~~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ad~I 248 (475)
T cd03813 172 PKADVYHAVSTGYAGLL--GALAKARRGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQ-AADRI 248 (475)
T ss_pred CCCCEEeccCcchHHHH--HHHHHHHhCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH-hCCEE
Confidence 46899999987655444 444555555 999999987543211 00 011222222222 2223333 38999
Q ss_pred EEeChhhhcc------C-CCceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEeecccCCHHHHHHHHHHHHHhc
Q 010098 186 IRLSAATQEY------P-NSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKEL 258 (518)
Q Consensus 186 i~~S~~~~~~------~-~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~ 258 (518)
+++|+..++. . .+..+++||+|.+.|.+.... ....+.+.|+|+||+.+.||++.+++|+..++++.
T Consensus 249 i~~s~~~~~~~~~~g~~~~ki~vIpNgid~~~f~~~~~~------~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~ 322 (475)
T cd03813 249 TTLYEGNRERQIEDGADPEKIRVIPNGIDPERFAPARRA------RPEKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKI 322 (475)
T ss_pred EecCHHHHHHHHHcCCCHHHeEEeCCCcCHHHcCCcccc------ccCCCCcEEEEEeccccccCHHHHHHHHHHHHHhC
Confidence 9999877663 1 233455689998777643221 12334689999999999999999999999999889
Q ss_pred CCcEEEEEeCCCC----hHHHHHHHHHcCCe--EEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeC
Q 010098 259 AGLEMDLYGNGED----FDQIQRAAKKLKLV--VRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCAN 332 (518)
Q Consensus 259 ~~~~l~ivG~g~~----~~~l~~~~~~~~l~--v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~ 332 (518)
|+++|+|+|+|++ .++++++++++++. +++.| .+++.++|+.+|++|+||..|+||++++||||||+|||+|+
T Consensus 323 p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd 401 (475)
T cd03813 323 PDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATD 401 (475)
T ss_pred CCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEECC
Confidence 9999999999853 36678888888874 55666 88899999999999999999999999999999999999999
Q ss_pred CCC-cccccc------CCcEEeeC--CHHHHHHHHHHHHhCCCC--CCChHHH----hcCCHHHHHHHHHHHHH
Q 010098 333 HPS-NDFFKQ------FPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT----HQLSWESATERFLQVAE 391 (518)
Q Consensus 333 ~g~-~e~i~~------~~~g~~~~--d~~~l~~~i~~ll~~~~~--~l~~~~~----~~~sw~~~~~~~~~~y~ 391 (518)
.|+ .|++.+ |.+|++++ |+++++++|.++++|++. +|+++++ +.|+|+.++++|.++|+
T Consensus 402 ~g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~~~~~~~~~~~a~~~v~~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 402 VGSCRELIEGADDEALGPAGEVVPPADPEALARAILRLLKDPELRRAMGEAGRKRVERYYTLERMIDSYRRLYL 475 (475)
T ss_pred CCChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 998 999988 56898874 999999999999999876 7888777 78999999999999985
No 47
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.97 E-value=2.6e-30 Score=262.24 Aligned_cols=317 Identities=17% Similarity=0.116 Sum_probs=230.4
Q ss_pred cEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCC
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTS 85 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (518)
|||+++++. +..+|.+.....++++|.+.| |+|++++... .
T Consensus 1 MkIl~~~~~--~~~gG~~~~~~~l~~~l~~~G-~~v~v~~~~~-------------------------------~----- 41 (365)
T cd03825 1 MKVLHLNTS--DISGGAARAAYRLHRALQAAG-VDSTMLVQEK-------------------------------K----- 41 (365)
T ss_pred CeEEEEecC--CCCCcHHHHHHHHHHHHHhcC-CceeEEEeec-------------------------------c-----
Confidence 799999874 455888899999999999998 9999998711 0
Q ss_pred CCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhc--C-CEEEEEeCChhhhhhhh--
Q 010098 86 TFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKF--R-FVVGIVHTNYLEYVKRE-- 160 (518)
Q Consensus 86 ~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~--~-~~v~~~h~~~~~~~~~~-- 160 (518)
.+.+.++..+||+||+|......+. ..+..+. + |.|.++|+.++......
T Consensus 42 ----------------------~~~~~~~~~~~diih~~~~~~~~~~---~~~~~~~~~~~~~v~~~hd~~~~~~~~~~~ 96 (365)
T cd03825 42 ----------------------ALISKIEIINADIVHLHWIHGGFLS---IEDLSKLLDRKPVVWTLHDMWPFTGGCHYP 96 (365)
T ss_pred ----------------------hhhhChhcccCCEEEEEccccCccC---HHHHHHHHcCCCEEEEcccCcccccccCCc
Confidence 0344566788999999885443211 1122222 3 89999997543211000
Q ss_pred -------------------cchHHHHHHHHHHHHHHhhhhccEEEEeChhhhccC--------CCceecccccCCCCcCc
Q 010098 161 -------------------KNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYP--------NSIVCNVHGVNPKFLEI 213 (518)
Q Consensus 161 -------------------~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~--------~~~~~~~~GVd~~~~~~ 213 (518)
................+.. .++.++++|+..++.. .+..+..+|+|.+.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~ 175 (365)
T cd03825 97 GGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAWAD-LNLTIVAPSRWLADCARSSSLFKGIPIEVIPNGIDTTIFRP 175 (365)
T ss_pred cccccccccCCCCCCCCCCCcccHHHHHHHHHHHHhcc-CCcEEEehhHHHHHHHHhccccCCCceEEeCCCCcccccCC
Confidence 0001111222222222212 2678999997776642 23345557999887766
Q ss_pred chhhHHHhhcCCCCcccEEEEEEeecc--cCCHHHHHHHHHHHHHh-cCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeC
Q 010098 214 GEKKMEQQQNGNKAFTKGAYYIGRMVW--SKGYEELLGLLNIYHKE-LAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYP 290 (518)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~il~vGr~~~--~Kg~~~ll~a~~~l~~~-~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~ 290 (518)
......+...+.+.+.+++++.|+... .||++.+++++..+.++ .++++++++|+++..... ..+..+.+.|
T Consensus 176 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~~~~-----~~~~~v~~~g 250 (365)
T cd03825 176 RDKREARKRLGLPADKKIILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDPEIPP-----DLPFPVHYLG 250 (365)
T ss_pred CcHHHHHHHhCCCCCCeEEEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCchhhhc-----cCCCceEecC
Confidence 555545555666666677777777655 89999999999998765 578999999998754331 2344567777
Q ss_pred CCC---ChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhC
Q 010098 291 GRD---HADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAE 364 (518)
Q Consensus 291 ~~~---~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~ 364 (518)
..+ ++.++|+.||++++||..|+||++++|||+||+|||+++.++ .|++.++.+|++++ |++++++++.+++++
T Consensus 251 ~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~ 330 (365)
T cd03825 251 SLNDDESLALIYSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLAD 330 (365)
T ss_pred CcCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCCChhheeCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 666 345889999999999999999999999999999999999987 89999988999875 899999999999998
Q ss_pred CCC--CCChHHH----hcCCHHHHHHHHHHHHHh
Q 010098 365 EPA--QPTDAQT----HQLSWESATERFLQVAEL 392 (518)
Q Consensus 365 ~~~--~l~~~~~----~~~sw~~~~~~~~~~y~~ 392 (518)
++. +++++++ ++|||+..+++|.++|+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~~ 364 (365)
T cd03825 331 PDEREELGEAARELAENEFDSRVQAKRYLSLYEE 364 (365)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 874 7777666 789999999999999974
No 48
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.97 E-value=1.5e-30 Score=265.39 Aligned_cols=275 Identities=11% Similarity=0.003 Sum_probs=198.8
Q ss_pred hhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEE-EEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhh---
Q 010098 106 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVV-GIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARV--- 180 (518)
Q Consensus 106 ~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v-~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 180 (518)
+..+..++++.+||+||+|..... .+ +...+...+ |++ .+.|..++... ..........+.+.
T Consensus 269 ~~~l~~~ir~~rpDIVHt~~~~a~-l~--g~laA~lagvpviv~~~h~~~~~~~---------~r~~~~e~~~~~~a~~i 336 (578)
T PRK15490 269 IKHLVPHLCERKLDYLSVWQDGAC-LM--IALAALIAGVPRIQLGLRGLPPVVR---------KRLFKPEYEPLYQALAV 336 (578)
T ss_pred HHHHHHHHHHcCCCEEEEcCcccH-HH--HHHHHHhcCCCEEEEeecccCCcch---------hhHHHHHHHHhhhhcee
Confidence 456888899999999999986653 22 222222223 664 45664221110 11111111112221
Q ss_pred --hccEEEEeChhhhc-------cCC-CceecccccCCCCcCcchhhH--HHh--hcCCCCcccEEEEEEeecccCCHHH
Q 010098 181 --HCHKVIRLSAATQE-------YPN-SIVCNVHGVNPKFLEIGEKKM--EQQ--QNGNKAFTKGAYYIGRMVWSKGYEE 246 (518)
Q Consensus 181 --~ad~vi~~S~~~~~-------~~~-~~~~~~~GVd~~~~~~~~~~~--~~~--~~~~~~~~~~il~vGr~~~~Kg~~~ 246 (518)
.+| +++.|..+++ .+. +..++.||||++.|.+..... .+. ..+.+++.++++++||+.+.||...
T Consensus 337 ~~~sd-~v~~s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~ 415 (578)
T PRK15490 337 VPGVD-FMSNNHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFA 415 (578)
T ss_pred Eecch-hhhccHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCCcEEEEEEEEehhcCHHH
Confidence 244 5666655444 222 344566899998776643211 111 1223445678999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCe--EEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHc
Q 010098 247 LLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAM 324 (518)
Q Consensus 247 ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~--v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~ 324 (518)
+++++.++.+..|+++|+|+|+|+..++++++++++++. +.|.|..+++.++|+.+|+||+||.+|+||++++|||||
T Consensus 416 LI~A~a~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~ 495 (578)
T PRK15490 416 WIDFAARYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNVFILFSRYEGLPNVLIEAQMV 495 (578)
T ss_pred HHHHHHHHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCEEEEcccccCccHHHHHHHHh
Confidence 999999988888999999999999999999999999874 778888889999999999999999999999999999999
Q ss_pred CCeEEeeCCCC-ccccccCCcEEeeC--CHHHHHHHH---HHHHhCCCC--CCChHHH----hcCCHHHHHHHHHHHHHh
Q 010098 325 GKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEAT---LKALAEEPA--QPTDAQT----HQLSWESATERFLQVAEL 392 (518)
Q Consensus 325 G~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i---~~ll~~~~~--~l~~~~~----~~~sw~~~~~~~~~~y~~ 392 (518)
|+|||+|+.|+ .|++.++.+|++++ |++++++++ .++.++... .|+++++ ++|||+.++++|.++|..
T Consensus 496 GlPVVATdvGG~~EiV~dG~nG~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 496 GVPVISTPAGGSAECFIEGVSGFILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred CCCEEEeCCCCcHHHcccCCcEEEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 99999999998 99999999999975 777777765 333433332 4666666 789999999999999985
Q ss_pred c
Q 010098 393 V 393 (518)
Q Consensus 393 ~ 393 (518)
.
T Consensus 576 ~ 576 (578)
T PRK15490 576 Q 576 (578)
T ss_pred c
Confidence 3
No 49
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.97 E-value=1.4e-29 Score=255.58 Aligned_cols=354 Identities=19% Similarity=0.164 Sum_probs=244.3
Q ss_pred EEEEeeccCCc-ccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCCC
Q 010098 8 IAIFTTASLPW-LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 86 (518)
Q Consensus 8 I~ivt~~~~P~-~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (518)
|++++..++|. .+|.+.....+++.|.+.| |+|+++++........ .... ... . ........
T Consensus 1 iLii~~~~p~~~~~g~~~~~~~~~~~l~~~g-~~v~v~~~~~~~~~~~--~~~~---~~~-~----------~~~~~~~~ 63 (377)
T cd03798 1 ILVISSLYPPPNNGGGGIFVKELARALAKRG-VEVTVLAPGPWGPKLL--DLLK---GRL-V----------GVERLPVL 63 (377)
T ss_pred CeEeccCCCCCCCchHHHHHHHHHHHHHHCC-CceEEEecCCCCCCch--hhcc---ccc-c----------cccccccC
Confidence 57888888654 6787888899999999988 9999998832111000 0000 000 0 00000000
Q ss_pred CcccccCcccccccccccchhhHHhhcC--CCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcch
Q 010098 87 FDTRFYPGKFAADKKSILAVGDITEIIP--DEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKND 163 (518)
Q Consensus 87 ~~i~~~~~~~~~~~~~i~~~~~l~~~i~--~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~ 163 (518)
......... ..........+.+.++ ..+||+||++.+....+. ...+.+..+ |++.++|+..........
T Consensus 64 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~dii~~~~~~~~~~~--~~~~~~~~~~~~i~~~h~~~~~~~~~~~-- 136 (377)
T cd03798 64 LPVVPLLKG---PLLYLLAARALLKLLKLKRFRPDLIHAHFAYPDGFA--AALLKRKLGIPLVVTLHGSDVNLLPRKR-- 136 (377)
T ss_pred cchhhcccc---chhHHHHHHHHHHHHhcccCCCCEEEEeccchHHHH--HHHHHHhcCCCEEEEeecchhcccCchh--
Confidence 000000000 0111112445677787 889999999976655443 333444444 899999976543321110
Q ss_pred HHHHHHHHHHHHHHhhhhccEEEEeChhhhcc------CC-CceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEE
Q 010098 164 RLQAFLLEFVNSWLARVHCHKVIRLSAATQEY------PN-SIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIG 236 (518)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~------~~-~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vG 236 (518)
..+...+...+ .+|.+++.|+..++. .. +..+..+|+|...+.+...... .........+.++|+|
T Consensus 137 -----~~~~~~~~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~g 209 (377)
T cd03798 137 -----LLRALLRRALR-RADAVIAVSEALADELKALGIDPEKVTVIPNGVDTERFSPADRAEA-RKLGLPEDKKVILFVG 209 (377)
T ss_pred -----hHHHHHHHHHh-cCCeEEeCCHHHHHHHHHhcCCCCceEEcCCCcCcccCCCcchHHH-HhccCCCCceEEEEec
Confidence 12222222233 379999999887764 22 2234446888877765433222 2223344578899999
Q ss_pred eecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCe--EEEeCCCC--ChHHHHhhcCeeEecCCCC
Q 010098 237 RMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRD--HADPIFHDYKVFLNPSTTD 312 (518)
Q Consensus 237 r~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~--v~~~~~~~--~~~~l~~~adv~v~pS~~E 312 (518)
++.+.||++.+++++..+.++.++++++++|.+++.+.+++.++++++. +.+.|..+ +..++|+.||++++||..|
T Consensus 210 ~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~ 289 (377)
T cd03798 210 RLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLRE 289 (377)
T ss_pred cCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhhc
Confidence 9999999999999999998888899999999999888888888877654 56677654 4559999999999999999
Q ss_pred CCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCCCCChHHH----hcCCHHHHHHH
Q 010098 313 VVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPAQPTDAQT----HQLSWESATER 385 (518)
Q Consensus 313 ~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~~l~~~~~----~~~sw~~~~~~ 385 (518)
++|++++|||+||+|||+++.++ .+++.++.+|++++ |+++++++|.++++++...+..+++ ++|+|+..+++
T Consensus 290 ~~~~~~~Ea~~~G~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 369 (377)
T cd03798 290 GFGLVLLEAMACGLPVVATDVGGIPEIITDGENGLLVPPGDPEALAEAILRLLADPWLRLGRAARRRVAERFSWENVAER 369 (377)
T ss_pred cCChHHHHHHhcCCCEEEecCCChHHHhcCCcceeEECCCCHHHHHHHHHHHhcCcHHHHhHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999999998 89999999988864 9999999999999988753333333 89999999999
Q ss_pred HHHHHHh
Q 010098 386 FLQVAEL 392 (518)
Q Consensus 386 ~~~~y~~ 392 (518)
+.++|+.
T Consensus 370 ~~~~~~~ 376 (377)
T cd03798 370 LLELYRE 376 (377)
T ss_pred HHHHHhh
Confidence 9999874
No 50
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.97 E-value=2.5e-30 Score=261.32 Aligned_cols=325 Identities=15% Similarity=0.108 Sum_probs=229.4
Q ss_pred EEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCCC
Q 010098 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 86 (518)
Q Consensus 7 rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (518)
||+++++.|+|. +...+..+++.|.+.| |+|++++......... .. . .........+.
T Consensus 1 ki~~~~~~~~~~---~~~~~~~~~~~L~~~g-~~v~v~~~~~~~~~~~--~~-~--~~~~~~~~~~~------------- 58 (355)
T cd03799 1 KIAYLVKEFPRL---SETFILREILALEAAG-HEVEIFSLRPPEDTLV--HP-E--DRAELARTRYL------------- 58 (355)
T ss_pred CEEEECCCCCCc---chHHHHHHHHHHHhCC-CeEEEEEecCcccccc--cc-c--ccccccchHHH-------------
Confidence 699999998443 4677888899999998 9999998732110000 00 0 00000000000
Q ss_pred CcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhc-C-CEEEEEeCChhhhhhhhcchH
Q 010098 87 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKF-R-FVVGIVHTNYLEYVKREKNDR 164 (518)
Q Consensus 87 ~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~-~-~~v~~~h~~~~~~~~~~~~~~ 164 (518)
......+.....+.+.+++.++|+||+|........ ..+..+. + +++.++|....... . ..
T Consensus 59 ----------~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~---~~ 121 (355)
T cd03799 59 ----------ARSLALLAQALVLARELRRLGIDHIHAHFGTTPATV---AMLASRLGGIPYSFTAHGKDIFRS-P---DA 121 (355)
T ss_pred ----------HHHHHHHHHHHHHHHHHHhcCCCEEEECCCCchHHH---HHHHHHhcCCCEEEEEeccccccc-C---ch
Confidence 000111111233555667789999999987544222 2233332 3 88888884422111 0 00
Q ss_pred HHHHHHHHHHHHHhhhhccEEEEeChhhhccCC--------CceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEE
Q 010098 165 LQAFLLEFVNSWLARVHCHKVIRLSAATQEYPN--------SIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIG 236 (518)
Q Consensus 165 ~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~--------~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vG 236 (518)
......+. .+|.+++.|+..++... +..+..+|+|.+.+.+.. .........++|+|
T Consensus 122 ------~~~~~~~~--~~~~vi~~s~~~~~~l~~~~~~~~~~~~vi~~~~d~~~~~~~~-------~~~~~~~~~i~~~g 186 (355)
T cd03799 122 ------IDLDEKLA--RADFVVAISEYNRQQLIRLLGCDPDKIHVVHCGVDLERFPPRP-------PPPPGEPLRILSVG 186 (355)
T ss_pred ------HHHHHHHh--hCCEEEECCHHHHHHHHHhcCCCcccEEEEeCCcCHHHcCCcc-------ccccCCCeEEEEEe
Confidence 11122222 27999999988877422 223445688877665432 11223367899999
Q ss_pred eecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCe--EEEeCCC--CChHHHHhhcCeeEecCCC-
Q 010098 237 RMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGR--DHADPIFHDYKVFLNPSTT- 311 (518)
Q Consensus 237 r~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~--v~~~~~~--~~~~~l~~~adv~v~pS~~- 311 (518)
++.+.||++.+++++.++....++++++++|.|+..+.+++.++++++. +.+.|.. +++.++|+.||++++||..
T Consensus 187 ~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~ 266 (355)
T cd03799 187 RLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTA 266 (355)
T ss_pred eeccccCHHHHHHHHHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceec
Confidence 9999999999999999998877899999999999999999998887664 6677765 5666999999999999998
Q ss_pred -----CCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC--CCChHHH----hcC
Q 010098 312 -----DVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT----HQL 377 (518)
Q Consensus 312 -----E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~--~l~~~~~----~~~ 377 (518)
|++|++++|||+||+|||+++.++ .+++.++.+|++++ |+++++++|.+++++++. +++++++ ++|
T Consensus 267 ~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~~ 346 (355)
T cd03799 267 ADGDREGLPVVLMEAMAMGLPVISTDVSGIPELVEDGETGLLVPPGDPEALADAIERLLDDPELRREMGEAGRARVEEEF 346 (355)
T ss_pred CCCCccCccHHHHHHHHcCCCEEecCCCCcchhhhCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999987 89999998999874 899999999999999885 7777776 789
Q ss_pred CHHHHHHH
Q 010098 378 SWESATER 385 (518)
Q Consensus 378 sw~~~~~~ 385 (518)
||+..+++
T Consensus 347 s~~~~~~~ 354 (355)
T cd03799 347 DIRKQAAR 354 (355)
T ss_pred CHHHHhhc
Confidence 99998875
No 51
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.97 E-value=7.2e-30 Score=256.49 Aligned_cols=335 Identities=18% Similarity=0.155 Sum_probs=230.4
Q ss_pred EEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCCC
Q 010098 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 86 (518)
Q Consensus 7 rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (518)
||+++++. .+|.......++++|.+.| |+|+++++...... .....++. ....+.
T Consensus 1 kIl~i~~~----~~g~~~~~~~l~~~L~~~g-~~v~~~~~~~~~~~--~~~~~~~~------------------~~~~~~ 55 (359)
T cd03808 1 KILHIVTV----DGGLYSFRLPLIKALRAAG-YEVHVVAPPGDELE--ELEALGVK------------------VIPIPL 55 (359)
T ss_pred CeeEEEec----chhHHHHHHHHHHHHHhcC-CeeEEEecCCCccc--ccccCCce------------------EEeccc
Confidence 68899887 4677778888999999988 99999988321100 00000000 000000
Q ss_pred CcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHh--hcCCEEEEEeCChhhhhhhhcchH
Q 010098 87 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKA--KFRFVVGIVHTNYLEYVKREKNDR 164 (518)
Q Consensus 87 ~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~--~~~~~v~~~h~~~~~~~~~~~~~~ 164 (518)
.... . ...........+.+.+++.+||+||++..... ++ +....+ ...+++...|......... .
T Consensus 56 ~~~~---~---~~~~~~~~~~~~~~~~~~~~~dvv~~~~~~~~-~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~----~ 122 (359)
T cd03808 56 DRRG---I---NPFKDLKALLRLYRLLRKERPDIVHTHTPKPG-IL--GRLAARLAGVPKVIYTVHGLGFVFTSG----G 122 (359)
T ss_pred cccc---c---ChHhHHHHHHHHHHHHHhcCCCEEEEccccch-hH--HHHHHHHcCCCCEEEEecCcchhhccc----h
Confidence 0000 0 00111112345677788899999999976543 22 222333 2226777777553322211 1
Q ss_pred HHHHHHHHHHHHHhhhhccEEEEeChhhhccCC---------CceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEE
Q 010098 165 LQAFLLEFVNSWLARVHCHKVIRLSAATQEYPN---------SIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYI 235 (518)
Q Consensus 165 ~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~---------~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~v 235 (518)
........+.++..+. +|.+++.|+..++... ......+|++...+.+.... ...+.+.++|+
T Consensus 123 ~~~~~~~~~~~~~~~~-~d~ii~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~ 194 (359)
T cd03808 123 LKRRLYLLLERLALRF-TDKVIFQNEDDRDLALKLGIIKKKKTVLIPGSGVDLDRFSPSPEP-------IPEDDPVFLFV 194 (359)
T ss_pred hHHHHHHHHHHHHHhh-ccEEEEcCHHHHHHHHHhcCCCcCceEEecCCCCChhhcCccccc-------cCCCCcEEEEE
Confidence 1223344444444443 7999999987776321 12223346776655432211 12346899999
Q ss_pred EeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHH-HHHcCC--eEEEeCCCCChHHHHhhcCeeEecCCCC
Q 010098 236 GRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRA-AKKLKL--VVRVYPGRDHADPIFHDYKVFLNPSTTD 312 (518)
Q Consensus 236 Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~-~~~~~l--~v~~~~~~~~~~~l~~~adv~v~pS~~E 312 (518)
|++.+.||++.+++++..+.++.++++|+++|.++........ +.+.+. .+.+.|..+++.++|+.||++++||..|
T Consensus 195 G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~i~ps~~e 274 (359)
T cd03808 195 ARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADVFVLPSYRE 274 (359)
T ss_pred eccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHHHhccEEEecCccc
Confidence 9999999999999999999888889999999998876555443 444443 4677888889999999999999999999
Q ss_pred CCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC--CCChHHH----hcCCHHHHH
Q 010098 313 VVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT----HQLSWESAT 383 (518)
Q Consensus 313 ~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~--~l~~~~~----~~~sw~~~~ 383 (518)
++|++++|||+||+|||+++.++ .+++.++.+|++++ |+++++++|.+++++++. +++++++ ++|||+.++
T Consensus 275 ~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 354 (359)
T cd03808 275 GLPRVLLEAMAMGRPVIATDVPGCREAVIDGVNGFLVPPGDAEALADAIERLIEDPELRARMGQAARKRAEEEFDEEIVV 354 (359)
T ss_pred CcchHHHHHHHcCCCEEEecCCCchhhhhcCcceEEECCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999997 99999899999874 899999999999998876 7777766 889999999
Q ss_pred HHHH
Q 010098 384 ERFL 387 (518)
Q Consensus 384 ~~~~ 387 (518)
++++
T Consensus 355 ~~~~ 358 (359)
T cd03808 355 KKLL 358 (359)
T ss_pred HHhh
Confidence 8876
No 52
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.97 E-value=4.6e-30 Score=258.79 Aligned_cols=341 Identities=16% Similarity=0.121 Sum_probs=231.4
Q ss_pred EEEEEeeccCCcc-cccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCC
Q 010098 7 HIAIFTTASLPWL-TGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTS 85 (518)
Q Consensus 7 rI~ivt~~~~P~~-~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (518)
||++++..++|.. +|.......++++|.++| |+|+++++.... .....+. ..... ....+ .....
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g-~~v~v~~~~~~~--~~~~~~~----~~~~~---~~~~~--~~~~~-- 66 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRG-HEVAVLTAGEDP--PRQDKEV----IGVVV---YGRPI--DEVLR-- 66 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcC-CceEEEeCCCCC--CCccccc----cccee---ecccc--ccccC--
Confidence 6999999998764 555566778899999998 999999883211 1100000 00000 00000 00000
Q ss_pred CCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchH
Q 010098 86 TFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDR 164 (518)
Q Consensus 86 ~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~ 164 (518)
......... ............+.+.+++.+||+||++.+...... ...+.++.+ |++.++|+.+.....
T Consensus 67 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~--~~~~~~~~~~~~i~~~hd~~~~~~~------ 136 (359)
T cd03823 67 -SALPRDLFH-LSDYDNPAVVAEFARLLEDFRPDVVHFHHLQGLGVS--ILRAARDRGIPIVLTLHDYWLICPR------ 136 (359)
T ss_pred -CCchhhhhH-HHhccCHHHHHHHHHHHHHcCCCEEEECCccchHHH--HHHHHHhcCCCEEEEEeeeeeecch------
Confidence 000000000 000001111345677788889999999987544222 222344444 899999955322110
Q ss_pred HHHHHHHHHHHHHhhhhccEEEEeChhhhccC-------CCceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEe
Q 010098 165 LQAFLLEFVNSWLARVHCHKVIRLSAATQEYP-------NSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGR 237 (518)
Q Consensus 165 ~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~-------~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr 237 (518)
...... ..|.+++.|+..++.. .+..+..+|+|...+.+... ..+.+.+.++|+|+
T Consensus 137 ---------~~~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~~~vi~n~~~~~~~~~~~~-------~~~~~~~~i~~~G~ 199 (359)
T cd03823 137 ---------QGLFKK-GGDAVIAPSRFLLDRYVANGLFAEKISVIRNGIDLDRAKRPRR-------APPGGRLRFGFIGQ 199 (359)
T ss_pred ---------hhhhcc-CCCEEEEeCHHHHHHHHHcCCCccceEEecCCcChhhcccccc-------CCCCCceEEEEEec
Confidence 011111 1399999998776632 23344456888876653221 23344678999999
Q ss_pred ecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCC--CChHHHHhhcCeeEecCC-CCCC
Q 010098 238 MVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGR--DHADPIFHDYKVFLNPST-TDVV 314 (518)
Q Consensus 238 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~--~~~~~l~~~adv~v~pS~-~E~~ 314 (518)
+.+.||++.+++++.++.+ ++++|+++|.++......... .....+.+.|.. +++.++|+.||++++||. .|++
T Consensus 200 ~~~~k~~~~li~~~~~l~~--~~~~l~i~G~~~~~~~~~~~~-~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~ 276 (359)
T cd03823 200 LTPHKGVDLLLEAFKRLPR--GDIELVIVGNGLELEEESYEL-EGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENF 276 (359)
T ss_pred CccccCHHHHHHHHHHHHh--cCcEEEEEcCchhhhHHHHhh-cCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCC
Confidence 9999999999999999876 689999999988765544433 334457777765 566799999999999997 8999
Q ss_pred chHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC--CCChHHHhcCCHHHHHHHHHHH
Q 010098 315 CTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQTHQLSWESATERFLQV 389 (518)
Q Consensus 315 ~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~--~l~~~~~~~~sw~~~~~~~~~~ 389 (518)
|++++|||+||+|||+++.++ .|++.++.+|++++ |.+++++++.++++|++. .+++++++.++.+.++++++++
T Consensus 277 ~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (359)
T cd03823 277 PLVIREALAAGVPVIASDIGGMAELVRDGVNGLLFPPGDAEDLAAALERLIDDPDLLERLRAGIEPPRSIEDQAEEYLKL 356 (359)
T ss_pred ChHHHHHHHCCCCEEECCCCCHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhChHHHHHHHHhHHHhhhHHHHHHHHHHH
Confidence 999999999999999999998 99999998999874 799999999999998876 7888888777779999999999
Q ss_pred HH
Q 010098 390 AE 391 (518)
Q Consensus 390 y~ 391 (518)
|+
T Consensus 357 ~~ 358 (359)
T cd03823 357 YR 358 (359)
T ss_pred hh
Confidence 86
No 53
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.97 E-value=3e-30 Score=261.16 Aligned_cols=343 Identities=16% Similarity=0.065 Sum_probs=231.4
Q ss_pred EEEEEeeccCC-cccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCC
Q 010098 7 HIAIFTTASLP-WLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTS 85 (518)
Q Consensus 7 rI~ivt~~~~P-~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (518)
||++++..+.| ..+|++.....++++|.+.| |+|+++++........ .. . .. .....+ ...
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~-~~v~~~~~~~~~~~~~--~~------~-~~--~~~~~~---~~~--- 62 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLD-PEEVLLLLPGAPGLLL--LP------L-RA--ALRLLL---RLP--- 62 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcC-CceEEEEecCcccccc--cc------c-hh--cccccc---ccc---
Confidence 68999999988 89999999999999999998 9999998833111100 00 0 00 000000 000
Q ss_pred CCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcCCEEEEEeCChhhhhhhhcchHH
Q 010098 86 TFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRL 165 (518)
Q Consensus 86 ~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~ 165 (518)
..................+...+||+||+++...... .....|++.++|+.++..........
T Consensus 63 ---------~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~-------~~~~~~~i~~~hd~~~~~~~~~~~~~- 125 (365)
T cd03809 63 ---------RRLLWGLLFLLRAGDRLLLLLLGLDLLHSPHNTAPLL-------RLRGVPVVVTIHDLIPLRFPEYFSPG- 125 (365)
T ss_pred ---------cccccchhhHHHHHHHHHhhhcCCCeeeecccccCcc-------cCCCCCEEEEeccchhhhCcccCCHH-
Confidence 0000011111122234445557899999998766511 12223899999976543322221211
Q ss_pred HHHHHHHHHHHHhhhhccEEEEeChhhhccC--------CCceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEe
Q 010098 166 QAFLLEFVNSWLARVHCHKVIRLSAATQEYP--------NSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGR 237 (518)
Q Consensus 166 ~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~--------~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr 237 (518)
.........+...+. +|.+++.|+..++.. .+..+..+|++...+....... ........+.+.++|+|+
T Consensus 126 ~~~~~~~~~~~~~~~-~d~~i~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~G~ 203 (365)
T cd03809 126 FRRYFRRLLRRALRR-ADAIITVSEATKRDLLRYLGVPPDKIVVIPLGVDPRFRPPPAEAE-VLRALYLLPRPYFLYVGT 203 (365)
T ss_pred HHHHHHHHHHHHHHH-cCEEEEccHHHHHHHHHHhCcCHHHEEeeccccCccccCCCchHH-HHHHhcCCCCCeEEEeCC
Confidence 122233333333332 799999998776631 2233445688887765443322 222333445788999999
Q ss_pred ecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCh-HHHHHHHHHcCCe--EEEeCCC--CChHHHHhhcCeeEecCCCC
Q 010098 238 MVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDF-DQIQRAAKKLKLV--VRVYPGR--DHADPIFHDYKVFLNPSTTD 312 (518)
Q Consensus 238 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~-~~l~~~~~~~~l~--v~~~~~~--~~~~~l~~~adv~v~pS~~E 312 (518)
+.+.||++.+++++..+.+..++++|+++|.+... .......++++.. +.+.|.. +++.++|+.||++++||..|
T Consensus 204 ~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e 283 (365)
T cd03809 204 IEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYE 283 (365)
T ss_pred CccccCHHHHHHHHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccchhc
Confidence 99999999999999999988888999999986653 3333333444443 6677765 45569999999999999999
Q ss_pred CCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEee--CCHHHHHHHHHHHHhCCCC--CCChHHH---hcCCHHHHHH
Q 010098 313 VVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTY--DGRNGFVEATLKALAEEPA--QPTDAQT---HQLSWESATE 384 (518)
Q Consensus 313 ~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~--~d~~~l~~~i~~ll~~~~~--~l~~~~~---~~~sw~~~~~ 384 (518)
++|++++|||++|+|||+++.|+ .|++.+ +|+++ +|+++++++|.++++|++. .++++++ ++|||++.++
T Consensus 284 ~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~sw~~~~~ 361 (365)
T cd03809 284 GFGLPVLEAMACGTPVIASNISSLPEVAGD--AALYFDPLDPEALAAAIERLLEDPALREELRERGLARAKRFSWEKTAR 361 (365)
T ss_pred cCCCCHHHHhcCCCcEEecCCCCccceecC--ceeeeCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999987 888855 34443 5899999999999998886 7777765 8999999999
Q ss_pred HHHH
Q 010098 385 RFLQ 388 (518)
Q Consensus 385 ~~~~ 388 (518)
++++
T Consensus 362 ~~~~ 365 (365)
T cd03809 362 RTLD 365 (365)
T ss_pred HHhC
Confidence 8863
No 54
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.97 E-value=4.9e-30 Score=259.37 Aligned_cols=314 Identities=17% Similarity=0.155 Sum_probs=220.4
Q ss_pred cccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCCCCcccccCcccccc
Q 010098 20 TGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTSTFDTRFYPGKFAAD 99 (518)
Q Consensus 20 ~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (518)
+|.+.....++++|.+.| |+|+++++.. ... .. ... ..+.. ..+...... .
T Consensus 10 gG~e~~~~~l~~~L~~~g-~~v~v~~~~~--~~~-------------~~----~~~---~~~~~---~~~~~~~~~---~ 60 (355)
T cd03819 10 GGVERGTLELARALVERG-HRSLVASAGG--RLV-------------AE----LEA---EGSRH---IKLPFISKN---P 60 (355)
T ss_pred CcHHHHHHHHHHHHHHcC-CEEEEEcCCC--chH-------------HH----HHh---cCCeE---EEccccccc---h
Confidence 888889999999999998 9999997711 000 00 000 00000 001110100 0
Q ss_pred cccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHh
Q 010098 100 KKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLA 178 (518)
Q Consensus 100 ~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (518)
...+.....+.+.+++.+||+||+++.... +. +..+.+..+ |++.++|+.+.... .....+.
T Consensus 61 ~~~~~~~~~l~~~~~~~~~dii~~~~~~~~-~~--~~~~~~~~~~~~i~~~h~~~~~~~--------------~~~~~~~ 123 (355)
T cd03819 61 LRILLNVARLRRLIREEKVDIVHARSRAPA-WS--AYLAARRTRPPFVTTVHGFYSVNF--------------RYNAIMA 123 (355)
T ss_pred hhhHHHHHHHHHHHHHcCCCEEEECCCchh-HH--HHHHHHhcCCCEEEEeCCchhhHH--------------HHHHHHH
Confidence 111112445677788899999999986543 22 222334444 89999996654321 1112222
Q ss_pred hhhccEEEEeChhhhccCC--------CceecccccCCCCcCcchhhH-----HHhhcCCCCcccEEEEEEeecccCCHH
Q 010098 179 RVHCHKVIRLSAATQEYPN--------SIVCNVHGVNPKFLEIGEKKM-----EQQQNGNKAFTKGAYYIGRMVWSKGYE 245 (518)
Q Consensus 179 ~~~ad~vi~~S~~~~~~~~--------~~~~~~~GVd~~~~~~~~~~~-----~~~~~~~~~~~~~il~vGr~~~~Kg~~ 245 (518)
+ +|.+++.|+..++... +.....+|+|...+.+..... .+...+.+++.++++|+||+.++||++
T Consensus 124 ~--~~~vi~~s~~~~~~~~~~~~~~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~ 201 (355)
T cd03819 124 R--GDRVIAVSNFIADHIRENYGVDPDRIRVIPRGVDLDRFDPGAVPPERILALAREWPLPKGKPVILLPGRLTRWKGQE 201 (355)
T ss_pred h--cCEEEEeCHHHHHHHHHhcCCChhhEEEecCCccccccCccccchHHHHHHHHHcCCCCCceEEEEeeccccccCHH
Confidence 2 7999999987766321 233445799987775433211 123344456678899999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCChH----HHHHHHHHcCCe--EEEeCCCCChHHHHhhcCeeEecC-CCCCCchHH
Q 010098 246 ELLGLLNIYHKELAGLEMDLYGNGEDFD----QIQRAAKKLKLV--VRVYPGRDHADPIFHDYKVFLNPS-TTDVVCTAT 318 (518)
Q Consensus 246 ~ll~a~~~l~~~~~~~~l~ivG~g~~~~----~l~~~~~~~~l~--v~~~~~~~~~~~l~~~adv~v~pS-~~E~~~~~~ 318 (518)
.+++++.++++..++++++++|.++..+ .+.+.++++++. +.++|..+++.++|+.||++++|| ..|++|+++
T Consensus 202 ~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l 281 (355)
T cd03819 202 VFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTA 281 (355)
T ss_pred HHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHH
Confidence 9999999998877899999999987643 344566666653 778888889999999999999999 799999999
Q ss_pred HHHHHcCCeEEeeCCCC-ccccccCCcEEee--CCHHHHHHHHHHHHh-CCCC--CCChHHH----hcCCHHH
Q 010098 319 AEALAMGKIVVCANHPS-NDFFKQFPNCRTY--DGRNGFVEATLKALA-EEPA--QPTDAQT----HQLSWES 381 (518)
Q Consensus 319 lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~--~d~~~l~~~i~~ll~-~~~~--~l~~~~~----~~~sw~~ 381 (518)
+||||||+|||+++.++ .|++.++.+|+++ +|+++++++|..++. +++. +++++++ ++|||+.
T Consensus 282 ~EA~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~~~~ 354 (355)
T cd03819 282 VEAQAMGRPVIASDHGGARETVRPGETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVETLFSYDR 354 (355)
T ss_pred HHHHhcCCCEEEcCCCCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999987 9999999899986 499999999976665 4444 7777777 8888875
No 55
>PLN02275 transferase, transferring glycosyl groups
Probab=99.97 E-value=3.5e-29 Score=254.59 Aligned_cols=244 Identities=10% Similarity=0.038 Sum_probs=173.3
Q ss_pred cCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhh-hhcchHHHHHHHHHHHHHHhhhhccEEEEeCh
Q 010098 113 IPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVK-REKNDRLQAFLLEFVNSWLARVHCHKVIRLSA 190 (518)
Q Consensus 113 i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~ 190 (518)
++..+||+||++++........+..+++..+ |+|.++|+.+..... ..........+...+.+++.+. ||.++++|+
T Consensus 96 ~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-ad~ii~~S~ 174 (371)
T PLN02275 96 VKIPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHNFGYTLLALSLGRSHPLVRLYRWYERHYGKM-ADGHLCVTK 174 (371)
T ss_pred hhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCCccHHHHhcccCCCCHHHHHHHHHHHHHHhh-CCEEEECCH
Confidence 4567899999998665322111222333334 899999965321111 1111222334555556666665 899999998
Q ss_pred hhhccCCC-----ceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEeecccCCHHHHHHHHHHHH----------
Q 010098 191 ATQEYPNS-----IVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYH---------- 255 (518)
Q Consensus 191 ~~~~~~~~-----~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~---------- 255 (518)
.+++...+ ..+..+| +.+.|.+..... ... .+...+++++|++.+.||++.+++|+..+.
T Consensus 175 ~~~~~l~~~~g~~i~vi~n~-~~~~f~~~~~~~---~~~-~~~~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~ 249 (371)
T PLN02275 175 AMQHELDQNWGIRATVLYDQ-PPEFFRPASLEI---RLR-PNRPALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNES 249 (371)
T ss_pred HHHHHHHHhcCCCeEEECCC-CHHHcCcCCchh---ccc-CCCcEEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccc
Confidence 88774321 1222344 334444322110 111 122457789999999999999999998874
Q ss_pred -------HhcCCcEEEEEeCCCChHHHHHHHHHcCCeE-EEeCC---CCChHHHHhhcCeeEecC---CCCCCchHHHHH
Q 010098 256 -------KELAGLEMDLYGNGEDFDQIQRAAKKLKLVV-RVYPG---RDHADPIFHDYKVFLNPS---TTDVVCTATAEA 321 (518)
Q Consensus 256 -------~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v-~~~~~---~~~~~~l~~~adv~v~pS---~~E~~~~~~lEA 321 (518)
+..|+++|+++|+|++.+++++++++++++. .++++ .+++.++|+.||+||.|+ ..|++|++++||
T Consensus 250 ~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEA 329 (371)
T PLN02275 250 DSASGKQSLYPRLLFIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDM 329 (371)
T ss_pred cccccccccCCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHH
Confidence 2357899999999999999999999999874 45553 567779999999999863 248899999999
Q ss_pred HHcCCeEEeeCCCC-ccccccCCcEEeeCCHHHHHHHHHHHH
Q 010098 322 LAMGKIVVCANHPS-NDFFKQFPNCRTYDGRNGFVEATLKAL 362 (518)
Q Consensus 322 ma~G~PVV~t~~g~-~e~i~~~~~g~~~~d~~~l~~~i~~ll 362 (518)
||||+|||+++.|+ +|++.++.+|++++|+++++++|.+++
T Consensus 330 mA~G~PVVa~~~gg~~eiv~~g~~G~lv~~~~~la~~i~~l~ 371 (371)
T PLN02275 330 FGCGLPVCAVSYSCIGELVKDGKNGLLFSSSSELADQLLELL 371 (371)
T ss_pred HHCCCCEEEecCCChHHHccCCCCeEEECCHHHHHHHHHHhC
Confidence 99999999999988 999999999999999999999998874
No 56
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.97 E-value=1.2e-29 Score=264.76 Aligned_cols=265 Identities=13% Similarity=0.109 Sum_probs=194.1
Q ss_pred hhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEEEEeC
Q 010098 111 EIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLS 189 (518)
Q Consensus 111 ~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S 189 (518)
+.+...++||+|++.+....+. .+..... |++.++|..............+............. .+|.+|++|
T Consensus 205 ~~L~~~~~di~i~dr~~~~~~~----~~~~~~~~~~v~~lH~~h~~~~~~~~~~~~~~~~y~~~~~~~~--~~D~iI~~S 278 (500)
T TIGR02918 205 KQLNLTKKDIIILDRSTGIGQA----VLENKGPAKLGVVVHAEHFSESATNETYILWNNYYEYQFSNAD--YIDFFITAT 278 (500)
T ss_pred HHHhCCCCCEEEEcCCcccchH----HHhcCCCceEEEEEChhhhcCccCcchhHHHHHHHHHHHhchh--hCCEEEECC
Confidence 3345567999999887654222 1222223 78889996542221111111100111111112222 379999999
Q ss_pred hhhhccC-----------CCceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEeecccCCHHHHHHHHHHHHHhc
Q 010098 190 AATQEYP-----------NSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKEL 258 (518)
Q Consensus 190 ~~~~~~~-----------~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~ 258 (518)
+..++.. .+..++++|++...+.+. .......|+|+||+.+.||++.+++|+.++.+..
T Consensus 279 ~~~~~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~~----------~~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~~~ 348 (500)
T TIGR02918 279 DIQNQILKNQFKKYYNIEPRIYTIPVGSLDELQYPE----------QERKPFSIITASRLAKEKHIDWLVKAVVKAKKSV 348 (500)
T ss_pred HHHHHHHHHHhhhhcCCCCcEEEEcCCCcccccCcc----------cccCCeEEEEEeccccccCHHHHHHHHHHHHhhC
Confidence 8655521 122344457654443221 0112467999999999999999999999999999
Q ss_pred CCcEEEEEeCCCChHHHHHHHHHcCCe--EEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCC-C
Q 010098 259 AGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP-S 335 (518)
Q Consensus 259 ~~~~l~ivG~g~~~~~l~~~~~~~~l~--v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g-~ 335 (518)
|+++|+|+|+|++.+.++++++++++. +.+.| ..+..++|+.||+||+||..|+||++++||||||+|||+++.+ |
T Consensus 349 p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G-~~~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G 427 (500)
T TIGR02918 349 PELTFDIYGEGGEKQKLQKIINENQAQDYIHLKG-HRNLSEVYKDYELYLSASTSEGFGLTLMEAVGSGLGMIGFDVNYG 427 (500)
T ss_pred CCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcC-CCCHHHHHHhCCEEEEcCccccccHHHHHHHHhCCCEEEecCCCC
Confidence 999999999999999999999998875 45555 5688899999999999999999999999999999999999986 5
Q ss_pred -ccccccCCcEEeeC------C----HHHHHHHHHHHHhCCCC-CCChHHH---hcCCHHHHHHHHHHHHHh
Q 010098 336 -NDFFKQFPNCRTYD------G----RNGFVEATLKALAEEPA-QPTDAQT---HQLSWESATERFLQVAEL 392 (518)
Q Consensus 336 -~e~i~~~~~g~~~~------d----~~~l~~~i~~ll~~~~~-~l~~~~~---~~~sw~~~~~~~~~~y~~ 392 (518)
+|++.++.+|++++ | +++++++|.++++++.. +|+++++ ++|||+.+++++.++++.
T Consensus 428 ~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~~fs~~~v~~~w~~ll~~ 499 (500)
T TIGR02918 428 NPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFNSNDIDAFHEYSYQIAEGFLTANIIEKWKKLVRE 499 (500)
T ss_pred CHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 89999999999974 2 88999999999954433 7888777 899999999999999874
No 57
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.97 E-value=3.7e-29 Score=255.96 Aligned_cols=349 Identities=11% Similarity=-0.007 Sum_probs=209.8
Q ss_pred cEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccc---cCCCCcccCChhHHHHHHHHhhhcccC
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQ---VYPGNITFASPKEQEAYVRWWLEDRTG 82 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~ 82 (518)
|||+.|.+.. ..+|++.-+..+++.|.++| |+|.++........+.. .|+..+. ..+.. ..+ ......+..
T Consensus 1 mkil~i~~~l--~~GGaeri~~~L~~~l~~~G-~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~-~~~~~~~~~ 74 (405)
T PRK10125 1 MNILQFNVRL--AEGGAAGVALDLHQRALQQG-LASHFVYGYGKGGKESVSHQNYPQVIK-HTPRM-TAM-ANIALFRLF 74 (405)
T ss_pred CeEEEEEeee--cCCchhHHHHHHHHHHHhcC-CeEEEEEecCCCcccccccCCcceEEE-ecccH-HHH-HHHHHHHhc
Confidence 7999999866 55787777889999999998 99999877321111100 0110000 00000 000 000000000
Q ss_pred CCCCCcccccCcccccccccccchhhHHhhc-CCCCCcEEEEcCCchh--hhhhchH-----HHHhhcCCEEEEEeCChh
Q 010098 83 FTSTFDTRFYPGKFAADKKSILAVGDITEII-PDEEADIAVLEEPEHL--TWFHHGK-----RWKAKFRFVVGIVHTNYL 154 (518)
Q Consensus 83 ~~~~~~i~~~~~~~~~~~~~i~~~~~l~~~i-~~~~~Dvi~~~~~~~~--~~~~~~~-----~~~~~~~~~v~~~h~~~~ 154 (518)
- .........+.++| ++.+|||||+|..... ++..... .+.....|+|.|.|+.++
T Consensus 75 ~----------------~~~~~~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~ 138 (405)
T PRK10125 75 N----------------RDLFGNFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWS 138 (405)
T ss_pred c----------------hhhcchHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccc
Confidence 0 00001133456656 5889999999986653 1110000 112222399999998764
Q ss_pred hh-----------hh--h--------hcch--HHHHHHHHHHHHHHhhh--hccEEEEeChhhhcc-----C-CCceecc
Q 010098 155 EY-----------VK--R--------EKND--RLQAFLLEFVNSWLARV--HCHKVIRLSAATQEY-----P-NSIVCNV 203 (518)
Q Consensus 155 ~~-----------~~--~--------~~~~--~~~~~~~~~~~~~~~~~--~ad~vi~~S~~~~~~-----~-~~~~~~~ 203 (518)
.. .+ . +... ......+..-.+.+... .++.+|++|+..++. . .+..++.
T Consensus 139 ~tg~c~~~~~C~~~~~~c~~Cp~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~~~~~~i~vI~ 218 (405)
T PRK10125 139 VTGRCAFTDGCEGWKTGCQKCPTLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIIN 218 (405)
T ss_pred cCCCcCCCcccccccccCCCCCCccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHHcCCCCEEEeC
Confidence 41 00 0 0000 00111111112222221 258899999877762 2 2344556
Q ss_pred cccCCCCcCcchhhHHHhhcCCCCcccEEEEEEee--cccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHH
Q 010098 204 HGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRM--VWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKK 281 (518)
Q Consensus 204 ~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~--~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~ 281 (518)
+|||++.+.+..... ....+++.+.++++|+. .+.||++.+++|+.++. ++++|+++|.|+...
T Consensus 219 NGid~~~~~~~~~~~---~~~~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l~---~~~~L~ivG~g~~~~-------- 284 (405)
T PRK10125 219 NGIDMATEAILAELP---PVRETQGKPKIAVVAHDLRYDGKTDQQLVREMMALG---DKIELHTFGKFSPFT-------- 284 (405)
T ss_pred CCcCccccccccccc---ccccCCCCCEEEEEEeccccCCccHHHHHHHHHhCC---CCeEEEEEcCCCccc--------
Confidence 799974322211110 01112346789999994 36899999999998763 479999999875422
Q ss_pred cCCeEEEeCCC---CChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC--CHHHHH
Q 010098 282 LKLVVRVYPGR---DHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFV 355 (518)
Q Consensus 282 ~~l~v~~~~~~---~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~ 355 (518)
...+.+++.. .+..++|+.+|+||+||..|+||++++||||||+|||+|+.|| +|++.++ +|++++ |+++++
T Consensus 285 -~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG~~Eiv~~~-~G~lv~~~d~~~La 362 (405)
T PRK10125 285 -AGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAAREVLQKS-GGKTVSEEEVLQLA 362 (405)
T ss_pred -ccceEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCChHHhEeCC-cEEEECCCCHHHHH
Confidence 1134555533 3456889999999999999999999999999999999999998 8988775 899974 999999
Q ss_pred HHHHHHHhCCCC-CCChHHH----hcCCHHHHHHHHHHHHHh
Q 010098 356 EATLKALAEEPA-QPTDAQT----HQLSWESATERFLQVAEL 392 (518)
Q Consensus 356 ~~i~~ll~~~~~-~l~~~~~----~~~sw~~~~~~~~~~y~~ 392 (518)
+.+...+.+... .+.++++ ++|||+.++++|+++|+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~~ 404 (405)
T PRK10125 363 QLSKPEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQN 404 (405)
T ss_pred hccCHHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 865433222211 1112233 789999999999999974
No 58
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.97 E-value=8.2e-29 Score=247.97 Aligned_cols=318 Identities=18% Similarity=0.163 Sum_probs=220.1
Q ss_pred EEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCCC
Q 010098 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 86 (518)
Q Consensus 7 rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (518)
||++++..+. .+|.......++++|.+.| |+|++++......... ... . .. . .. ....
T Consensus 1 kIl~~~~~~~--~gG~~~~~~~l~~~l~~~g-~~v~v~~~~~~~~~~~-~~~------~-~~--~---~~---~~~~--- 58 (353)
T cd03811 1 KILFVIPSLG--GGGAERVLLNLANGLDKRG-YDVTLVVLRDEGDYLE-LLP------S-NV--K---LI---PVRV--- 58 (353)
T ss_pred CeEEEeeccc--CCCcchhHHHHHHHHHhcC-ceEEEEEcCCCCcccc-ccc------c-ch--h---hh---ceee---
Confidence 6899998874 6887888899999998888 9999998833111000 000 0 00 0 00 0000
Q ss_pred CcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhh-cCCEEEEEeCChhhhhhhhcchHH
Q 010098 87 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAK-FRFVVGIVHTNYLEYVKREKNDRL 165 (518)
Q Consensus 87 ~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~-~~~~v~~~h~~~~~~~~~~~~~~~ 165 (518)
... ...........+.+.+++.+||+||++.. ....+ ...+..+ ..|++.++|+.+..........
T Consensus 59 --~~~------~~~~~~~~~~~~~~~~~~~~~dii~~~~~-~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-- 125 (353)
T cd03811 59 --LKL------KSLRDLLAILRLRRLLRKEKPDVVISHLT-TTPNV--LALLAARLGTKLIVWEHNSLSLELKRKLRL-- 125 (353)
T ss_pred --eec------ccccchhHHHHHHHHHHhcCCCEEEEcCc-cchhH--HHHHHhhcCCceEEEEcCcchhhhccchhH--
Confidence 000 00111112445778888889999999987 22122 1223322 2389999997765433211110
Q ss_pred HHHHHHHHHHHHhhhhccEEEEeChhhhcc-----C---CCceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEe
Q 010098 166 QAFLLEFVNSWLARVHCHKVIRLSAATQEY-----P---NSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGR 237 (518)
Q Consensus 166 ~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~-----~---~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr 237 (518)
. .......+ .+|.+++.|+..++. . .+..+..+|++...+........ ......+.+.++|+|+
T Consensus 126 ----~-~~~~~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~g~ 197 (353)
T cd03811 126 ----L-LLIRKLYR-RADKIVAVSEGVKEDLLKLLGIPPDKIEVIYNPIDIEEIRALAEEPL--ELGIPPDGPVILAVGR 197 (353)
T ss_pred ----H-HHHHhhcc-ccceEEEeccchhhhHHHhhcCCccccEEecCCcChhhcCcccchhh--hcCCCCCceEEEEEec
Confidence 0 12222222 379999999887773 2 23344557888877654332211 2233455788999999
Q ss_pred ecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCe--EEEeCCCCChHHHHhhcCeeEecCCCCCCc
Q 010098 238 MVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRDHADPIFHDYKVFLNPSTTDVVC 315 (518)
Q Consensus 238 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~--v~~~~~~~~~~~l~~~adv~v~pS~~E~~~ 315 (518)
+.+.||++.+++++.++....++++|+++|.|+..+.+++.++++++. +.+.+..++..++++.||++++||..|++|
T Consensus 198 ~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~ps~~e~~~ 277 (353)
T cd03811 198 LSPQKGFDTLIRAFALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSRYEGFP 277 (353)
T ss_pred chhhcChHHHHHHHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCEEEeCcccCCCC
Confidence 999999999999999998888899999999999988888888888765 567788888899999999999999999999
Q ss_pred hHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC--CHHHH---HHHHHHHHhCCCC
Q 010098 316 TATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGF---VEATLKALAEEPA 367 (518)
Q Consensus 316 ~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l---~~~i~~ll~~~~~ 367 (518)
++++|||+||+|||+++.++ .|++.++.+|++++ |++++ ++++.++.++++.
T Consensus 278 ~~~~Ea~~~G~PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~ 335 (353)
T cd03811 278 NVLLEAMALGTPVVATDCPGPREILEDGENGLLVPVGDEAALAAAALALLDLLLDPEL 335 (353)
T ss_pred cHHHHHHHhCCCEEEcCCCChHHHhcCCCceEEECCCCHHHHHHHHHHHHhccCChHH
Confidence 99999999999999999998 99999999999974 78888 5555555555443
No 59
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.97 E-value=7.2e-29 Score=255.72 Aligned_cols=196 Identities=16% Similarity=0.046 Sum_probs=156.3
Q ss_pred hccEEEEeChhhhcc-----CC--CceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEeecccCCHHHHHHHHHH
Q 010098 181 HCHKVIRLSAATQEY-----PN--SIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNI 253 (518)
Q Consensus 181 ~ad~vi~~S~~~~~~-----~~--~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~ 253 (518)
.||.++++|+.+++. .. +..++.+|+|.+.+.+... ......+.++|+||+.+.||++.+++|+.+
T Consensus 189 ~aD~ii~~S~~~~~~~~~~~~~~~~~~vi~~gvd~~~~~~~~~-------~~~~~~~~il~vgr~~~~K~~~~li~A~~~ 261 (419)
T cd03806 189 FADVVMVNSTWTRNHIRSLWKRNTKPSIVYPPCDVEELLKLPL-------DEKTRENQILSIAQFRPEKNHPLQLRAFAK 261 (419)
T ss_pred cCCEEEECCHHHHHHHHHHhCcCCCcEEEcCCCCHHHhccccc-------ccccCCcEEEEEEeecCCCCHHHHHHHHHH
Confidence 499999999877763 11 2334456888765543221 112235789999999999999999999999
Q ss_pred HHHhcCC-----cEEEEEeCCCC------hHHHHHHHHHcCCe--EEEeCC--CCChHHHHhhcCeeEecCCCCCCchHH
Q 010098 254 YHKELAG-----LEMDLYGNGED------FDQIQRAAKKLKLV--VRVYPG--RDHADPIFHDYKVFLNPSTTDVVCTAT 318 (518)
Q Consensus 254 l~~~~~~-----~~l~ivG~g~~------~~~l~~~~~~~~l~--v~~~~~--~~~~~~l~~~adv~v~pS~~E~~~~~~ 318 (518)
+.+..|+ ++|+|+|++.. .++++++++++++. ++|.+. .++..++|+.||++++||..|+||+++
T Consensus 262 l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~~E~Fgi~~ 341 (419)
T cd03806 262 LLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLHTMWNEHFGIGV 341 (419)
T ss_pred HHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEECCccCCcccHH
Confidence 9887654 99999998743 36778888888875 667775 456669999999999999999999999
Q ss_pred HHHHHcCCeEEeeCCCC--ccccc---cCCcEEeeCCHHHHHHHHHHHHhCCCC---CCChHHH---hcCCHHHHH
Q 010098 319 AEALAMGKIVVCANHPS--NDFFK---QFPNCRTYDGRNGFVEATLKALAEEPA---QPTDAQT---HQLSWESAT 383 (518)
Q Consensus 319 lEAma~G~PVV~t~~g~--~e~i~---~~~~g~~~~d~~~l~~~i~~ll~~~~~---~l~~~~~---~~~sw~~~~ 383 (518)
+||||||+|||+++.|| .+++. ++.+|++++|+++++++|.+++++++. .++++++ ++|||+...
T Consensus 342 lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~d~~~la~ai~~ll~~~~~~~~~~~~~~~~~~~~fs~~~f~ 417 (419)
T cd03806 342 VEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLASTAEEYAEAIEKILSLSEEERLRIRRAARSSVKRFSDEEFE 417 (419)
T ss_pred HHHHHcCCcEEEEcCCCCchheeeccCCCCceEEeCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCHHHhc
Confidence 99999999999999876 57888 899999999999999999999998764 3433333 789998764
No 60
>PLN02949 transferase, transferring glycosyl groups
Probab=99.97 E-value=3.2e-28 Score=251.66 Aligned_cols=207 Identities=13% Similarity=0.062 Sum_probs=163.9
Q ss_pred hccEEEEeChhhhccC-------CCceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEeecccCCHHHHHHHHHH
Q 010098 181 HCHKVIRLSAATQEYP-------NSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNI 253 (518)
Q Consensus 181 ~ad~vi~~S~~~~~~~-------~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~ 253 (518)
.||.|+++|+.+++.. .+..+..+|+|.+.+...+. ....+.+.++++||+.++||++.+|+|+.+
T Consensus 220 ~ad~ii~nS~~t~~~l~~~~~~~~~i~vvyp~vd~~~~~~~~~-------~~~~~~~~il~vGR~~~~Kg~~llI~A~~~ 292 (463)
T PLN02949 220 CAHLAMVNSSWTKSHIEALWRIPERIKRVYPPCDTSGLQALPL-------ERSEDPPYIISVAQFRPEKAHALQLEAFAL 292 (463)
T ss_pred CCCEEEECCHHHHHHHHHHcCCCCCeEEEcCCCCHHHcccCCc-------cccCCCCEEEEEEeeeccCCHHHHHHHHHH
Confidence 4899999998887732 12233345676544321110 111235789999999999999999999998
Q ss_pred HHHh----cCCcEEEEEeCCCC------hHHHHHHHHHcCCe--EEEeCCC--CChHHHHhhcCeeEecCCCCCCchHHH
Q 010098 254 YHKE----LAGLEMDLYGNGED------FDQIQRAAKKLKLV--VRVYPGR--DHADPIFHDYKVFLNPSTTDVVCTATA 319 (518)
Q Consensus 254 l~~~----~~~~~l~ivG~g~~------~~~l~~~~~~~~l~--v~~~~~~--~~~~~l~~~adv~v~pS~~E~~~~~~l 319 (518)
+.++ .++++|+|+|+++. .++++++++++++. +.|.+.. ++..++|+.||++++||..|+||++++
T Consensus 293 l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvl 372 (463)
T PLN02949 293 ALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVV 372 (463)
T ss_pred HHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHH
Confidence 7653 46899999999743 25688899998876 6677754 566699999999999999999999999
Q ss_pred HHHHcCCeEEeeCCCC--cccccc---CCcEEeeCCHHHHHHHHHHHHhCC-CC--CCChHHH---hcCCHHHHHHHHHH
Q 010098 320 EALAMGKIVVCANHPS--NDFFKQ---FPNCRTYDGRNGFVEATLKALAEE-PA--QPTDAQT---HQLSWESATERFLQ 388 (518)
Q Consensus 320 EAma~G~PVV~t~~g~--~e~i~~---~~~g~~~~d~~~l~~~i~~ll~~~-~~--~l~~~~~---~~~sw~~~~~~~~~ 388 (518)
||||||+|||+++.|| .|++.+ +.+|++++|+++++++|.++++++ +. +|+++++ ++|||+...+++.+
T Consensus 373 EAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~FS~e~~~~~~~~ 452 (463)
T PLN02949 373 EYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLATTVEEYADAILEVLRMRETERLEIAAAARKRANRFSEQRFNEDFKD 452 (463)
T ss_pred HHHHcCCcEEEeCCCCCcceeeecCCCCcccccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 9999999999999988 477765 678999999999999999999864 33 7887777 78999999999999
Q ss_pred HHHhcC
Q 010098 389 VAELVG 394 (518)
Q Consensus 389 ~y~~~~ 394 (518)
.++...
T Consensus 453 ~i~~l~ 458 (463)
T PLN02949 453 AIRPIL 458 (463)
T ss_pred HHHHHH
Confidence 998543
No 61
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.96 E-value=1.1e-27 Score=246.53 Aligned_cols=254 Identities=15% Similarity=0.107 Sum_probs=187.6
Q ss_pred CCCCcEEEEcCCchhhhhhchHHHHhhcC-C-EEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEEEEeChhh
Q 010098 115 DEEADIAVLEEPEHLTWFHHGKRWKAKFR-F-VVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAAT 192 (518)
Q Consensus 115 ~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~-~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~ 192 (518)
+.++|++|++........ ...+.++.. + +|.+.|... .+....... . ..+.+.+.+ .+|.++++|+..
T Consensus 125 ~~~~~v~~sy~~~~~~~~--~~~l~~~~~~~~~i~~~Hg~d-~~~~~~~~~-----~-~~~~~~~~~-~~d~ii~~S~~~ 194 (407)
T cd04946 125 DGQGTVFYSYWLHETAYA--LALLKKEYLRKRVISRAHGYD-LYEDRYPSG-----Y-IPLRRYLLS-SLDAVFPCSEQG 194 (407)
T ss_pred ccCceEEEEecCchHHHH--HHHHHHhcCCceEEEEeccch-hhhhhcccc-----c-hHHHHHHHh-cCCEEEECCHHH
Confidence 456788888766555322 233555545 3 899999542 222111110 1 111222222 379999999887
Q ss_pred hccCC--------CceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEeecccCCHHHHHHHHHHHHHhcC--CcE
Q 010098 193 QEYPN--------SIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELA--GLE 262 (518)
Q Consensus 193 ~~~~~--------~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~--~~~ 262 (518)
+++.. +..+..+|++...+... ...++.+.++++|++.+.||++.+++++.++.+..| +++
T Consensus 195 ~~~l~~~~~~~~~ki~vi~~gv~~~~~~~~---------~~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~ 265 (407)
T cd04946 195 RNYLQKRYPAYKEKIKVSYLGVSDPGIISK---------PSKDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIK 265 (407)
T ss_pred HHHHHHHCCCccccEEEEECCcccccccCC---------CCCCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEE
Confidence 76421 22344468876544321 112336789999999999999999999999998876 466
Q ss_pred EEEEeCCCChHHHHHHHHHcCCe--EEEeCCCCC--hHHHHhh--cCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-
Q 010098 263 MDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRDH--ADPIFHD--YKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS- 335 (518)
Q Consensus 263 l~ivG~g~~~~~l~~~~~~~~l~--v~~~~~~~~--~~~l~~~--adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~- 335 (518)
++++|+|++.+.+++++++++.+ +.+.|..++ +.++|+. +|+|++||..|++|++++||||||+|||+|+.||
T Consensus 266 ~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg~ 345 (407)
T cd04946 266 WTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGT 345 (407)
T ss_pred EEEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCCc
Confidence 78899999999999998876654 667776664 4488875 7899999999999999999999999999999998
Q ss_pred ccccccCCcEEeeC---CHHHHHHHHHHHHhCCCC--CCChHHH----hcCCHHHHHHHHH
Q 010098 336 NDFFKQFPNCRTYD---GRNGFVEATLKALAEEPA--QPTDAQT----HQLSWESATERFL 387 (518)
Q Consensus 336 ~e~i~~~~~g~~~~---d~~~l~~~i~~ll~~~~~--~l~~~~~----~~~sw~~~~~~~~ 387 (518)
.|++.++.+|++++ |+++++++|.++++|++. +|+++++ ++|||+...+++.
T Consensus 346 ~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 346 PEIVDNGGNGLLLSKDPTPNELVSSLSKFIDNEEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred HHHhcCCCcEEEeCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 99999998998863 789999999999998876 8888888 8999999998875
No 62
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.96 E-value=1.2e-26 Score=234.79 Aligned_cols=252 Identities=14% Similarity=0.126 Sum_probs=176.6
Q ss_pred HHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcCCEEEEEeCChh-------hhhhhhcchH--HHHHHHHHHHHHHhh
Q 010098 109 ITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYL-------EYVKREKNDR--LQAFLLEFVNSWLAR 179 (518)
Q Consensus 109 l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~-------~~~~~~~~~~--~~~~~~~~~~~~~~~ 179 (518)
+.+.+...++|+|++++......+ ......+.+.++|+... .+........ ........+..+..+
T Consensus 75 ~~~~~~~~~~D~v~~~~~~~~~~~-----~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (351)
T cd03804 75 AIEQFDLSGYDLVISSSHAVAKGV-----ITRPDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRIWDRR 149 (351)
T ss_pred HHHhccccCCCEEEEcCcHHhccc-----cCCCCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHHHHHHHHHH
Confidence 444566778999998775433111 11222378888886421 1111111100 001112222222121
Q ss_pred h--hccEEEEeChhhhcc-----CCCceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEeecccCCHHHHHHHHH
Q 010098 180 V--HCHKVIRLSAATQEY-----PNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLN 252 (518)
Q Consensus 180 ~--~ad~vi~~S~~~~~~-----~~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~ 252 (518)
. ++|.++++|+.+++. ..+..+..+|+|.+.+.+.. ...+.++|+|++.+.||++.+++++.
T Consensus 150 ~~~~~d~ii~~S~~~~~~~~~~~~~~~~vi~~~~d~~~~~~~~-----------~~~~~il~~G~~~~~K~~~~li~a~~ 218 (351)
T cd03804 150 SAARVDYFIANSRFVARRIKKYYGRDATVIYPPVDTDRFTPAE-----------EKEDYYLSVGRLVPYKRIDLAIEAFN 218 (351)
T ss_pred HhcCCCEEEECCHHHHHHHHHHhCCCcEEECCCCCHhhcCcCC-----------CCCCEEEEEEcCccccChHHHHHHHH
Confidence 1 489999999887763 22333444677776655322 12457899999999999999999997
Q ss_pred HHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCC--hHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEe
Q 010098 253 IYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDH--ADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVC 330 (518)
Q Consensus 253 ~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~--~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~ 330 (518)
++ + ++|+++|+|++.+.+++ ...-++.+.|..++ ..++|+.||++++||. |+||++++||||||+|||+
T Consensus 219 ~~----~-~~l~ivG~g~~~~~l~~---~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~Pvi~ 289 (351)
T cd03804 219 KL----G-KRLVVIGDGPELDRLRA---KAGPNVTFLGRVSDEELRDLYARARAFLFPAE-EDFGIVPVEAMASGTPVIA 289 (351)
T ss_pred HC----C-CcEEEEECChhHHHHHh---hcCCCEEEecCCCHHHHHHHHHhCCEEEECCc-CCCCchHHHHHHcCCCEEE
Confidence 64 3 78999999988777766 33445888887665 5699999999999999 9999999999999999999
Q ss_pred eCCCC-ccccccCCcEEee--CCHHHHHHHHHHHHhCCC-C--CCChHHHhcCCHHHHHHHH
Q 010098 331 ANHPS-NDFFKQFPNCRTY--DGRNGFVEATLKALAEEP-A--QPTDAQTHQLSWESATERF 386 (518)
Q Consensus 331 t~~g~-~e~i~~~~~g~~~--~d~~~l~~~i~~ll~~~~-~--~l~~~~~~~~sw~~~~~~~ 386 (518)
++.|+ .|++.++.+|+++ +|+++++++|.++++|++ . .+++++ ++|+|++..+++
T Consensus 290 ~~~~~~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 350 (351)
T cd03804 290 YGKGGALETVIDGVTGILFEEQTVESLAAAVERFEKNEDFDPQAIRAHA-ERFSESRFREKI 350 (351)
T ss_pred eCCCCCcceeeCCCCEEEeCCCCHHHHHHHHHHHHhCcccCHHHHHHHH-HhcCHHHHHHHh
Confidence 99987 9999999999987 489999999999999985 2 222222 679999998775
No 63
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.95 E-value=4.2e-27 Score=239.96 Aligned_cols=260 Identities=17% Similarity=0.183 Sum_probs=194.3
Q ss_pred hcCCCCCcEEEEcCCchhhhhhchHHHHhh-cCCEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEEEEeCh
Q 010098 112 IIPDEEADIAVLEEPEHLTWFHHGKRWKAK-FRFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSA 190 (518)
Q Consensus 112 ~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~-~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~ 190 (518)
++...++|+++++.+....+. . +... ..+.+.++|+.............++. ..+.....+.+ +|.+++.|+
T Consensus 94 l~~~~~~diii~~~~~~~~~~--~--~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~d~ii~~s~ 166 (372)
T cd04949 94 LNKDTKPDVFILDRPTLDGQA--L--LNMKKAAKVVVVLHSNHVSDNNDPVHSLINN-FYEYVFENLDK--VDGVIVATE 166 (372)
T ss_pred HhcCCCCCEEEECCccccchh--H--HhccCCceEEEEEChHHhCCcccccccccch-hhHHHHhChhh--CCEEEEccH
Confidence 333478999999988766431 1 2222 12678889965422211110111111 22222223333 699999997
Q ss_pred hhhcc-----CC--CceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEE
Q 010098 191 ATQEY-----PN--SIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEM 263 (518)
Q Consensus 191 ~~~~~-----~~--~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l 263 (518)
..++. .. +..+.++|++...+.+.. ........++++||+.++||++.+++++.++..+.|+++|
T Consensus 167 ~~~~~l~~~~~~~~~v~~ip~g~~~~~~~~~~--------~~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l 238 (372)
T cd04949 167 QQKQDLQKQFGNYNPIYTIPVGSIDPLKLPAQ--------FKQRKPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATL 238 (372)
T ss_pred HHHHHHHHHhCCCCceEEEcccccChhhcccc--------hhhcCCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEE
Confidence 77652 11 123445678776554321 0112256789999999999999999999999999999999
Q ss_pred EEEeCCCChHHHHHHHHHcCCe--EEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCC-C-cccc
Q 010098 264 DLYGNGEDFDQIQRAAKKLKLV--VRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP-S-NDFF 339 (518)
Q Consensus 264 ~ivG~g~~~~~l~~~~~~~~l~--v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g-~-~e~i 339 (518)
+++|.|+....++..++++++. +.+.|..+++.++|+.||++|+||..|+||++++||||||+|||+++.+ + .+++
T Consensus 239 ~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v 318 (372)
T cd04949 239 DIYGYGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYGPSEII 318 (372)
T ss_pred EEEEeCchHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCCcHHHc
Confidence 9999999888888888887765 5667778889999999999999999999999999999999999999987 5 8999
Q ss_pred ccCCcEEeeC--CHHHHHHHHHHHHhCCCC--CCChHHH---hcCCHHHHHHHH
Q 010098 340 KQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT---HQLSWESATERF 386 (518)
Q Consensus 340 ~~~~~g~~~~--d~~~l~~~i~~ll~~~~~--~l~~~~~---~~~sw~~~~~~~ 386 (518)
.++.+|++++ |+++++++|.+++++++. +++++++ ++|||+++++++
T Consensus 319 ~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~w 372 (372)
T cd04949 319 EDGENGYLVPKGDIEALAEAIIELLNDPKLLQKFSEAAYENAERYSEENVWEKW 372 (372)
T ss_pred ccCCCceEeCCCcHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHHHHHhcC
Confidence 9999999986 999999999999999865 7888777 899999998763
No 64
>PHA01630 putative group 1 glycosyl transferase
Probab=99.95 E-value=2.1e-26 Score=228.68 Aligned_cols=221 Identities=14% Similarity=0.095 Sum_probs=164.0
Q ss_pred CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEEEEeChhhhccC--------CCceecccccCCCCcCcch
Q 010098 144 FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYP--------NSIVCNVHGVNPKFLEIGE 215 (518)
Q Consensus 144 ~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~--------~~~~~~~~GVd~~~~~~~~ 215 (518)
|+++++|+.+ ++...+..+.....+|.++++|+.+++.. ++..+++||||++.|.+..
T Consensus 71 ~~v~e~~~~~--------------~l~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~g~~~~~~i~vIpNGVd~~~f~~~~ 136 (331)
T PHA01630 71 NIVFEVADTD--------------AISHTALYFFRNQPVDEIVVPSQWSKNAFYTSGLKIPQPIYVIPHNLNPRMFEYKP 136 (331)
T ss_pred ceEEEEEeec--------------hhhHHHHHHHhhccCCEEEECCHHHHHHHHHcCCCCCCCEEEECCCCCHHHcCCCc
Confidence 7899999622 12222333441223799999998887631 1334556899988776432
Q ss_pred hhHHHhhcCCCCcccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCe-EEEeCCCCC
Q 010098 216 KKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV-VRVYPGRDH 294 (518)
Q Consensus 216 ~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~-v~~~~~~~~ 294 (518)
.. .....+++++|++.++||++.|++|++++.++.++++++++|++.....+. ++. .....+.++
T Consensus 137 ~~--------~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~~~~l~------~~~~~~~~v~~~~ 202 (331)
T PHA01630 137 KE--------KPHPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNMLDPRLF------GLNGVKTPLPDDD 202 (331)
T ss_pred cc--------cCCCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCcccchhhc------cccceeccCCHHH
Confidence 11 112456667788899999999999999998888899999999765443221 221 111235567
Q ss_pred hHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEee---------------------CCHH
Q 010098 295 ADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTY---------------------DGRN 352 (518)
Q Consensus 295 ~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~---------------------~d~~ 352 (518)
+.++|+.||+||+||..|+||++++||||||+|||+|+.|| .|++.++.||+++ .|.+
T Consensus 203 l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~ 282 (331)
T PHA01630 203 IYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIE 282 (331)
T ss_pred HHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccccccCCCHH
Confidence 77999999999999999999999999999999999999998 8999998887664 2778
Q ss_pred HHHHHHHHHHhCC--CC---CCChHHH---hcCCHHHHHHHHHHHHHh
Q 010098 353 GFVEATLKALAEE--PA---QPTDAQT---HQLSWESATERFLQVAEL 392 (518)
Q Consensus 353 ~l~~~i~~ll~~~--~~---~l~~~~~---~~~sw~~~~~~~~~~y~~ 392 (518)
++++++.+++.|+ +. .++.+++ ++|||++++++++++|+.
T Consensus 283 ~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 283 DAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999885 22 3333333 899999999999999974
No 65
>PHA01633 putative glycosyl transferase group 1
Probab=99.93 E-value=3e-24 Score=210.86 Aligned_cols=221 Identities=18% Similarity=0.166 Sum_probs=159.4
Q ss_pred CCEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEEEEeChhhhccCC-----CceecccccCCCCcCcchh-
Q 010098 143 RFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPN-----SIVCNVHGVNPKFLEIGEK- 216 (518)
Q Consensus 143 ~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~-----~~~~~~~GVd~~~~~~~~~- 216 (518)
++.+.++|..+.. ...++++.+. +.+|++|+.+++... ....+++|+|++.|.+...
T Consensus 71 ~~~~tt~~g~~~~---------------~~y~~~m~~~--~~vIavS~~t~~~L~~~G~~~~i~I~~GVD~~~f~p~~~~ 133 (335)
T PHA01633 71 KYFYTTCDGIPNI---------------EIVNKYLLQD--VKFIPNSKFSAENLQEVGLQVDLPVFHGINFKIVENAEKL 133 (335)
T ss_pred CceEEeeCCcCch---------------HHHHHHHhcC--CEEEeCCHHHHHHHHHhCCCCceeeeCCCChhhcCccchh
Confidence 4788888865531 1235555664 899999988877321 1234567999988876432
Q ss_pred -hHHHhhcCCC-CcccEEEEEEeecccCCHHHHHHHHHHHHHhcCC----cEEEEEeCCCChHHHHHHHHHcCC--eEEE
Q 010098 217 -KMEQQQNGNK-AFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAG----LEMDLYGNGEDFDQIQRAAKKLKL--VVRV 288 (518)
Q Consensus 217 -~~~~~~~~~~-~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~----~~l~ivG~g~~~~~l~~~~~~~~l--~v~~ 288 (518)
...++..+.. ++.+.++++||+.++||++.|++|+.++.++.|+ ++++++|.+ . .+++++ .+++
T Consensus 134 ~~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~----~----~~~l~l~~~V~f 205 (335)
T PHA01633 134 VPQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHK----Q----FTQLEVPANVHF 205 (335)
T ss_pred hHHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHH----H----HHHcCCCCcEEE
Confidence 1222333322 3467899999999999999999999999887775 477777731 2 233344 3666
Q ss_pred eC---C--CCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-cccccc------------------CCc
Q 010098 289 YP---G--RDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQ------------------FPN 344 (518)
Q Consensus 289 ~~---~--~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~------------------~~~ 344 (518)
.+ . .+++.++|+.+|+||+||..|+||++++||||||+|||+++.++ .|+..+ ...
T Consensus 206 ~g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~ 285 (335)
T PHA01633 206 VAEFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQ 285 (335)
T ss_pred EecCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCc
Confidence 64 2 34566999999999999999999999999999999999999987 775442 234
Q ss_pred EEeeC--CHHHHHHHHHHHHhCCCC-CCChHHH---hcCCHHHHHHHHHH
Q 010098 345 CRTYD--GRNGFVEATLKALAEEPA-QPTDAQT---HQLSWESATERFLQ 388 (518)
Q Consensus 345 g~~~~--d~~~l~~~i~~ll~~~~~-~l~~~~~---~~~sw~~~~~~~~~ 388 (518)
|+.++ |+++++++|..+++..+. ..+.+++ ++|+|+++.+++++
T Consensus 286 g~~~~~~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f~~~~~~~~~~~ 335 (335)
T PHA01633 286 KWKIHKFQIEDMANAIILAFELQDREERSMKLKELAKKYDIRNLYTRFLE 335 (335)
T ss_pred eeeecCCCHHHHHHHHHHHHhccChhhhhHHHHHHHHhcCHHHHHHHhhC
Confidence 56654 999999999999765543 3344444 99999999998864
No 66
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.90 E-value=4.7e-23 Score=208.95 Aligned_cols=332 Identities=14% Similarity=0.095 Sum_probs=209.1
Q ss_pred cEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCC-CCcccCChhHHHHHHHHhhhcccCCC
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYP-GNITFASPKEQEAYVRWWLEDRTGFT 84 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (518)
|||+|++... +|.......++++|.+.| |+|++++..... ....+. .++.+. ++..
T Consensus 2 ~~i~i~~~g~----gG~~~~~~~la~~L~~~g-~ev~vv~~~~~~--~~~~~~~~g~~~~---------------~~~~- 58 (357)
T PRK00726 2 KKILLAGGGT----GGHVFPALALAEELKKRG-WEVLYLGTARGM--EARLVPKAGIEFH---------------FIPS- 58 (357)
T ss_pred cEEEEEcCcc----hHhhhHHHHHHHHHHhCC-CEEEEEECCCch--hhhccccCCCcEE---------------EEec-
Confidence 6888887643 464555568999999998 999999873210 000000 010000 0000
Q ss_pred CCCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcch
Q 010098 85 STFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKND 163 (518)
Q Consensus 85 ~~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~ 163 (518)
+...-.....+.......+..+..+.+++++.+||+||+|..... +. +...++..+ |++.+.|+..+.
T Consensus 59 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~ik~~~pDvv~~~~~~~~-~~--~~~~~~~~~~p~v~~~~~~~~~-------- 127 (357)
T PRK00726 59 GGLRRKGSLANLKAPFKLLKGVLQARKILKRFKPDVVVGFGGYVS-GP--GGLAARLLGIPLVIHEQNAVPG-------- 127 (357)
T ss_pred cCcCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcch-hH--HHHHHHHcCCCEEEEcCCCCcc--------
Confidence 000000000000000111222456778889999999999985443 22 222333333 777665532211
Q ss_pred HHHHHHHHHHHHHHhhhhccEEEEeChhhhc-c-CCCceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEeeccc
Q 010098 164 RLQAFLLEFVNSWLARVHCHKVIRLSAATQE-Y-PNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWS 241 (518)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~-~-~~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~ 241 (518)
...+++.+. +|.+++.++.... . ..+..+..+|++.+.+.+.. .....+.+++.++++++|+....
T Consensus 128 --------~~~r~~~~~-~d~ii~~~~~~~~~~~~~~i~vi~n~v~~~~~~~~~---~~~~~~~~~~~~~i~~~gg~~~~ 195 (357)
T PRK00726 128 --------LANKLLARF-AKKVATAFPGAFPEFFKPKAVVTGNPVREEILALAA---PPARLAGREGKPTLLVVGGSQGA 195 (357)
T ss_pred --------HHHHHHHHH-hchheECchhhhhccCCCCEEEECCCCChHhhcccc---hhhhccCCCCCeEEEEECCcHhH
Confidence 123444443 7999988864321 2 23344555788876654322 11233444557788899988888
Q ss_pred CCHHHHH-HHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHH
Q 010098 242 KGYEELL-GLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAE 320 (518)
Q Consensus 242 Kg~~~ll-~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lE 320 (518)
|++..++ +|+.++.+. + ..+.++|+|+. +.+++..+ +++++.+.+..++..++|+.||+++.+|- +.+++|
T Consensus 196 ~~~~~~l~~a~~~~~~~-~-~~~~~~G~g~~-~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d~~i~~~g----~~~~~E 267 (357)
T PRK00726 196 RVLNEAVPEALALLPEA-L-QVIHQTGKGDL-EEVRAAYA-AGINAEVVPFIDDMAAAYAAADLVICRAG----ASTVAE 267 (357)
T ss_pred HHHHHHHHHHHHHhhhC-c-EEEEEcCCCcH-HHHHHHhh-cCCcEEEeehHhhHHHHHHhCCEEEECCC----HHHHHH
Confidence 8876555 999888654 3 56778899875 55555556 78777778877889999999999998762 689999
Q ss_pred HHHcCCeEEeeCCCC---------ccccccCCcEEeeC--C--HHHHHHHHHHHHhCCCC--CCChHHH---hcCCHHHH
Q 010098 321 ALAMGKIVVCANHPS---------NDFFKQFPNCRTYD--G--RNGFVEATLKALAEEPA--QPTDAQT---HQLSWESA 382 (518)
Q Consensus 321 Ama~G~PVV~t~~g~---------~e~i~~~~~g~~~~--d--~~~l~~~i~~ll~~~~~--~l~~~~~---~~~sw~~~ 382 (518)
||+||+|||++..++ .+.+.+..+|++++ | +++++++|.++++|++. +|+++++ +.++-+.+
T Consensus 268 a~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (357)
T PRK00726 268 LAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALGKPDAAERL 347 (357)
T ss_pred HHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCcCHHHHH
Confidence 999999999997642 25677778888863 5 99999999999999876 7888777 66777778
Q ss_pred HHHHHHHHH
Q 010098 383 TERFLQVAE 391 (518)
Q Consensus 383 ~~~~~~~y~ 391 (518)
++.+++..+
T Consensus 348 ~~~~~~~~~ 356 (357)
T PRK00726 348 ADLIEELAR 356 (357)
T ss_pred HHHHHHHhh
Confidence 777776543
No 67
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.90 E-value=1.1e-22 Score=208.09 Aligned_cols=345 Identities=13% Similarity=0.073 Sum_probs=209.4
Q ss_pred CCccccEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHH-----H
Q 010098 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVR-----W 75 (518)
Q Consensus 1 M~~~~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-----~ 75 (518)
|.++ +||+|+|.++ .+|-......+++.|.++| |+|.++++.+... .| .+ .. .....|.. .
T Consensus 1 ~~~~-~rili~t~~~---G~GH~~~a~al~~~l~~~g-~~~~~~~d~~~~~-----~~-~~--~~-~~~~~y~~~~~~~~ 66 (380)
T PRK13609 1 MIKN-PKVLILTAHY---GNGHVQVAKTLEQTFRQKG-IKDVIVCDLFGES-----HP-VI--TE-ITKYLYLKSYTIGK 66 (380)
T ss_pred CCCC-CeEEEEEcCC---CchHHHHHHHHHHHHHhcC-CCcEEEEEhHHhc-----ch-HH--HH-HHHHHHHHHHHHhH
Confidence 6666 7999999887 3354444466779999988 8877776633110 11 00 00 00001100 0
Q ss_pred hhhcccCCCCCCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChh
Q 010098 76 WLEDRTGFTSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYL 154 (518)
Q Consensus 76 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~ 154 (518)
++........ .. .+..+. ...........+.+++++.+||+||++.+...... .......+ |++. .++++.
T Consensus 67 ~~~~~~~~~~-~~--~~~~~~-~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~~---~~~~~~~~ip~~~-~~td~~ 138 (380)
T PRK13609 67 ELYRLFYYGV-EK--IYDKKI-FSWYANFGRKRLKLLLQAEKPDIVINTFPIIAVPE---LKKQTGISIPTYN-VLTDFC 138 (380)
T ss_pred HHHHHHHhcc-Cc--ccchHH-HHHHHHHHHHHHHHHHHHhCcCEEEEcChHHHHHH---HHHhcCCCCCeEE-EeCCCC
Confidence 0000000000 00 000000 00001111356888899999999999877654111 11122223 6553 333331
Q ss_pred hhhhhhcchHHHHHHHHHHHHHHhhhhccEEEEeChhhhccC------CCceecccccCC--CCcCcchhhHHHhhcCCC
Q 010098 155 EYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYP------NSIVCNVHGVNP--KFLEIGEKKMEQQQNGNK 226 (518)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~------~~~~~~~~GVd~--~~~~~~~~~~~~~~~~~~ 226 (518)
.. ..|+.+ .+|.+++.|+..++.. .+.+. +.|++. .+.........+...+.+
T Consensus 139 ~~-----------------~~~~~~-~ad~i~~~s~~~~~~l~~~gi~~~ki~-v~G~p~~~~f~~~~~~~~~~~~~~l~ 199 (380)
T PRK13609 139 LH-----------------KIWVHR-EVDRYFVATDHVKKVLVDIGVPPEQVV-ETGIPIRSSFELKINPDIIYNKYQLC 199 (380)
T ss_pred CC-----------------cccccC-CCCEEEECCHHHHHHHHHcCCChhHEE-EECcccChHHcCcCCHHHHHHHcCCC
Confidence 10 123333 3799999998877632 22222 235544 222222222334456665
Q ss_pred Cccc-EEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeC-CC-ChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcC
Q 010098 227 AFTK-GAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGN-GE-DFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYK 303 (518)
Q Consensus 227 ~~~~-~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~-g~-~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~ad 303 (518)
++.+ ++++.|+....|++..+++++.+ .++++++++|+ +. ..+.+++.++.++.+++++|..+++.++|+.||
T Consensus 200 ~~~~~il~~~G~~~~~k~~~~li~~l~~----~~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD 275 (380)
T PRK13609 200 PNKKILLIMAGAHGVLGNVKELCQSLMS----VPDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRVTS 275 (380)
T ss_pred CCCcEEEEEcCCCCCCcCHHHHHHHHhh----CCCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHhcc
Confidence 5555 45556888888999999998743 36899988754 22 356777777766656888888888889999999
Q ss_pred eeEecCCCCCCchHHHHHHHcCCeEEeeC-CCCc-----cccccCCcEEeeCCHHHHHHHHHHHHhCCCC--CCChHHH-
Q 010098 304 VFLNPSTTDVVCTATAEALAMGKIVVCAN-HPSN-----DFFKQFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQT- 374 (518)
Q Consensus 304 v~v~pS~~E~~~~~~lEAma~G~PVV~t~-~g~~-----e~i~~~~~g~~~~d~~~l~~~i~~ll~~~~~--~l~~~~~- 374 (518)
++|. ++.|++++|||+||+|||+++ .++. +++.+...++...|+++++++|.++++|++. +|+++++
T Consensus 276 ~~v~----~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~~~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~ 351 (380)
T PRK13609 276 CMIT----KPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGAAVVIRDDEEVFAKTEALLQDDMKLLQMKEAMKS 351 (380)
T ss_pred EEEe----CCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCcEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 9884 456999999999999999986 4542 2444444555567999999999999998875 7777766
Q ss_pred --hcCCHHHHHHHHHHHHHhcC
Q 010098 375 --HQLSWESATERFLQVAELVG 394 (518)
Q Consensus 375 --~~~sw~~~~~~~~~~y~~~~ 394 (518)
+.++++.+++.+++.++...
T Consensus 352 ~~~~~s~~~i~~~i~~~~~~~~ 373 (380)
T PRK13609 352 LYLPEPADHIVDDILAENHVEP 373 (380)
T ss_pred hCCCchHHHHHHHHHHhhhhhh
Confidence 66899999999999887544
No 68
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.89 E-value=2e-22 Score=203.64 Aligned_cols=239 Identities=15% Similarity=0.136 Sum_probs=167.6
Q ss_pred hhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccE
Q 010098 106 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHK 184 (518)
Q Consensus 106 ~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 184 (518)
...+.+++++.+||+||++.+... +. +...++..+ |+++..|..++. ...+++.+. +|.
T Consensus 78 ~~~~~~~i~~~~pDvI~~~~~~~~-~~--~~~~a~~~~~p~v~~~~~~~~~----------------~~~~~~~~~-~~~ 137 (350)
T cd03785 78 VLQARKILKKFKPDVVVGFGGYVS-GP--VGLAAKLLGIPLVIHEQNAVPG----------------LANRLLARF-ADR 137 (350)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcc-hH--HHHHHHHhCCCEEEEcCCCCcc----------------HHHHHHHHh-hCE
Confidence 345677788999999999976543 22 222344444 777544432211 112334443 799
Q ss_pred EEEeChhhhcc--CCCceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEeecccCCHHH-HHHHHHHHHHhcCCc
Q 010098 185 VIRLSAATQEY--PNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEE-LLGLLNIYHKELAGL 261 (518)
Q Consensus 185 vi~~S~~~~~~--~~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~-ll~a~~~l~~~~~~~ 261 (518)
+++.|+..+++ ..+.....+|++.+.+.+... +...+.+++.++++++|+....|+... +++++..+.+ +++
T Consensus 138 vi~~s~~~~~~~~~~~~~~i~n~v~~~~~~~~~~---~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~--~~~ 212 (350)
T cd03785 138 VALSFPETAKYFPKDKAVVTGNPVREEILALDRE---RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLR--KRL 212 (350)
T ss_pred EEEcchhhhhcCCCCcEEEECCCCchHHhhhhhh---HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhc--cCe
Confidence 99999888774 233445567888776654222 444555666778888887777777754 5588887763 356
Q ss_pred E-EEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----
Q 010098 262 E-MDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS----- 335 (518)
Q Consensus 262 ~-l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~----- 335 (518)
+ +.++|.| +.+++++.+++++.++.+.+..++..++|+.||++|.+|- +++++|||++|+|||+++.++
T Consensus 213 ~~~~i~G~g-~~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~v~~sg----~~t~~Eam~~G~Pvv~~~~~~~~~~~ 287 (350)
T cd03785 213 QVIHQTGKG-DLEEVKKAYEELGVNYEVFPFIDDMAAAYAAADLVISRAG----ASTVAELAALGLPAILIPLPYAADDH 287 (350)
T ss_pred EEEEEcCCc-cHHHHHHHHhccCCCeEEeehhhhHHHHHHhcCEEEECCC----HhHHHHHHHhCCCEEEeecCCCCCCc
Confidence 6 4577887 6677888877765557788877899999999999998762 689999999999999987542
Q ss_pred ----ccccccCCcEEeeC----CHHHHHHHHHHHHhCCCC--CCChHHH
Q 010098 336 ----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEPA--QPTDAQT 374 (518)
Q Consensus 336 ----~e~i~~~~~g~~~~----d~~~l~~~i~~ll~~~~~--~l~~~~~ 374 (518)
.+.+.+..+|++++ |+++++++|.++++|++. +|+++++
T Consensus 288 ~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~ 336 (350)
T cd03785 288 QTANARALVKAGAAVLIPQEELTPERLAAALLELLSDPERLKAMAEAAR 336 (350)
T ss_pred HHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 35677778888874 799999999999987765 6777666
No 69
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.89 E-value=9.9e-22 Score=201.14 Aligned_cols=278 Identities=14% Similarity=0.095 Sum_probs=170.5
Q ss_pred hhcCCCCCcEEEEcCCchhhhhhchHHHHhh-cC-CEEEEEeCChhh-hhhhhcchHHH--------------H--HHHH
Q 010098 111 EIIPDEEADIAVLEEPEHLTWFHHGKRWKAK-FR-FVVGIVHTNYLE-YVKREKNDRLQ--------------A--FLLE 171 (518)
Q Consensus 111 ~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~-~~-~~v~~~h~~~~~-~~~~~~~~~~~--------------~--~~~~ 171 (518)
+.+...++||+|+|+.... + .+..+++. .. |.|+|.|..... +... +...+- . .-..
T Consensus 142 ~~~~~~~~dViH~HeWm~g--~-a~~~lK~~~~~VptVfTtHAT~~GR~l~~-g~~~~y~~l~~~~~d~eA~~~~I~~r~ 217 (590)
T cd03793 142 EQFDDEPAVVAHFHEWQAG--V-GLPLLRKRKVDVSTIFTTHATLLGRYLCA-GNVDFYNNLDYFDVDKEAGKRGIYHRY 217 (590)
T ss_pred hhccCCCCeEEEEcchhHh--H-HHHHHHHhCCCCCEEEEeccccccccccc-CCcccchhhhhcchhhhhhcccchHHH
Confidence 3333467999999998665 1 12334323 23 799999954211 1000 000000 0 0111
Q ss_pred HHHHHHhhhhccEEEEeChhhhcc-------CCCceecccccCCCCcCcchhhH-----------------HHhhcCCCC
Q 010098 172 FVNSWLARVHCHKVIRLSAATQEY-------PNSIVCNVHGVNPKFLEIGEKKM-----------------EQQQNGNKA 227 (518)
Q Consensus 172 ~~~~~~~~~~ad~vi~~S~~~~~~-------~~~~~~~~~GVd~~~~~~~~~~~-----------------~~~~~~~~~ 227 (518)
.+.++..+ .||.++++|+.+++- +.. .+.+||+|++.|....... .....+.++
T Consensus 218 ~iE~~aa~-~Ad~fttVS~it~~E~~~Ll~~~pd-~ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~~~~ 295 (590)
T cd03793 218 CIERAAAH-CAHVFTTVSEITAYEAEHLLKRKPD-VVLPNGLNVKKFSALHEFQNLHAQSKEKINEFVRGHFYGHYDFDL 295 (590)
T ss_pred HHHHHHHh-hCCEEEECChHHHHHHHHHhCCCCC-EEeCCCcchhhcccchhhhhhhHHhhhhhhHHHHHHHhhhcCCCC
Confidence 13334444 499999999888771 222 3777899998886543210 122234455
Q ss_pred cccEEEE-EEeecc-cCCHHHHHHHHHHHHHh----cCC---cEEEEEeCCCC------------hHHHHH---------
Q 010098 228 FTKGAYY-IGRMVW-SKGYEELLGLLNIYHKE----LAG---LEMDLYGNGED------------FDQIQR--------- 277 (518)
Q Consensus 228 ~~~~il~-vGr~~~-~Kg~~~ll~a~~~l~~~----~~~---~~l~ivG~g~~------------~~~l~~--------- 277 (518)
+.++++| +||++. +||++.+|+|+.++... ..+ +-|+++-.+.. .+++++
T Consensus 296 d~tli~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i 375 (590)
T cd03793 296 DKTLYFFTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKI 375 (590)
T ss_pred CCeEEEEEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHh
Confidence 6677777 799998 99999999999998652 223 23333322111 011111
Q ss_pred ----------------------------------------------------------HHHHcCCe--------EEEeC-
Q 010098 278 ----------------------------------------------------------AAKKLKLV--------VRVYP- 290 (518)
Q Consensus 278 ----------------------------------------------------------~~~~~~l~--------v~~~~- 290 (518)
.+++.++. +.|++
T Consensus 376 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~ 455 (590)
T cd03793 376 GKRLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPE 455 (590)
T ss_pred hhhhhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEccc
Confidence 11221221 22222
Q ss_pred ---C-----CCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----ccccccC-C-cEEee-------
Q 010098 291 ---G-----RDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQF-P-NCRTY------- 348 (518)
Q Consensus 291 ---~-----~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~~-~-~g~~~------- 348 (518)
+ -.+..++|+.||+||+||.+|+||++++||||||+|||+|+.+| .|.+.++ . ++++.
T Consensus 456 ~L~~~~~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~ 535 (590)
T cd03793 456 FLSSTNPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSP 535 (590)
T ss_pred ccCCCCCcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCccch
Confidence 1 12355999999999999999999999999999999999999975 4555544 2 34443
Q ss_pred -CCHHHHHHHHHHHHhCCCC-CCChH-----HHhcCCHHHHHHHHHHHHHhcC
Q 010098 349 -DGRNGFVEATLKALAEEPA-QPTDA-----QTHQLSWESATERFLQVAELVG 394 (518)
Q Consensus 349 -~d~~~l~~~i~~ll~~~~~-~l~~~-----~~~~~sw~~~~~~~~~~y~~~~ 394 (518)
++.++++++|.++++.+.. .+... ..+.|+|++.+..|.++|+.+.
T Consensus 536 ~e~v~~La~~m~~~~~~~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al 588 (590)
T cd03793 536 DESVQQLTQYMYEFCQLSRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLAL 588 (590)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 1567888999998855433 22222 1288999999999999999775
No 70
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=1.6e-21 Score=198.97 Aligned_cols=377 Identities=15% Similarity=0.119 Sum_probs=231.7
Q ss_pred cEEEEEeeccCC--cccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCC----cccCCh----hHH----HH
Q 010098 6 QHIAIFTTASLP--WLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGN----ITFASP----KEQ----EA 71 (518)
Q Consensus 6 ~rI~ivt~~~~P--~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~----~~~~~~----~~~----~~ 71 (518)
|||++++....| ..+|-+-....+.+.|.+.| ++|+|+.|.+...... +.+. .++... ... ..
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g-~~v~v~lP~y~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRG-VDVRVLLPSYPKVQKE--WRDLLKVVGKFGVLKGGRAQLFIVKEY 77 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcC-CeEEEEcCCchhhhhh--hccccceeeEeeeeecccceEEEEEee
Confidence 688999988888 45787888888889999998 9999999976421111 1100 000000 000 00
Q ss_pred H----HHHhhhcccCCCCC--CcccccCcccccccccccchhhHHhhcCC----CCCcEEEEcCCchhhhhhchHHHHhh
Q 010098 72 Y----VRWWLEDRTGFTST--FDTRFYPGKFAADKKSILAVGDITEIIPD----EEADIAVLEEPEHLTWFHHGKRWKAK 141 (518)
Q Consensus 72 ~----~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~i~~~~~l~~~i~~----~~~Dvi~~~~~~~~~~~~~~~~~~~~ 141 (518)
. +...+...-.+... -....+.. ...+.........+.+.. ..|||||+|+.... +. ...++..
T Consensus 78 ~~~~~v~~~lid~~~~f~r~~~~~~~~~d---~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~-L~--~~~lk~~ 151 (487)
T COG0297 78 GKDGGVDLYLIDNPALFKRPDSTLYGYYD---NAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTG-LL--PAYLKQR 151 (487)
T ss_pred cccCCCcEEEecChhhcCccccccCCCCc---HHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHH-HH--HHHHhhc
Confidence 0 00000000000000 00001111 011111111111222211 56999999998665 22 3334443
Q ss_pred ---c-C-CEEEEEeCC-----hh-hhhhhhcchHHHHH--------HHHHHHHHHhhhhccEEEEeChhhhc-cC-----
Q 010098 142 ---F-R-FVVGIVHTN-----YL-EYVKREKNDRLQAF--------LLEFVNSWLARVHCHKVIRLSAATQE-YP----- 196 (518)
Q Consensus 142 ---~-~-~~v~~~h~~-----~~-~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ad~vi~~S~~~~~-~~----- 196 (518)
. . |.|+|+|.. +. .+............ ...++...+. +||.|.++|+...+ +.
T Consensus 152 ~~~~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~~~~l~~~~~~~~lK~gi~--~ad~vttVSptYa~Ei~t~~~g 229 (487)
T COG0297 152 YRSGYIIPTVFTIHNLAYQGLFRLQYLEELGLPFEAYASFGLEFYGQISFLKGGLY--YADAVTTVSPTYAGEIYTPEYG 229 (487)
T ss_pred ccccccCCeEEEEeeceeecccchhhHHHhcCCHHHhhhceeeecCcchhhhhhhe--eccEEEEECHHHHHhhcccccc
Confidence 1 2 899999944 11 11111111110000 0011111111 58999999955544 21
Q ss_pred -----------CCceecccccCCCCcCcchhh-------------------HHHhhcCCC--CcccEEEEEEeecccCCH
Q 010098 197 -----------NSIVCNVHGVNPKFLEIGEKK-------------------MEQQQNGNK--AFTKGAYYIGRMVWSKGY 244 (518)
Q Consensus 197 -----------~~~~~~~~GVd~~~~~~~~~~-------------------~~~~~~~~~--~~~~~il~vGr~~~~Kg~ 244 (518)
.+..-+.||+|....+|.... ......+++ .+.|.+.++||+.++||+
T Consensus 230 ~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~~~~~pl~~~vsRl~~QKG~ 309 (487)
T COG0297 230 EGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDVDLPGPLFGFVSRLTAQKGL 309 (487)
T ss_pred ccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCCCCCCcEEEEeeccccccch
Confidence 112334468887766554322 111224444 357999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCC--hHHHHHHHHHcCCeEEEeCCCCChH--HHHhhcCeeEecCCCCCCchHHHH
Q 010098 245 EELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLVVRVYPGRDHAD--PIFHDYKVFLNPSTTDVVCTATAE 320 (518)
Q Consensus 245 ~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~~~l~v~~~~~~~~~~--~l~~~adv~v~pS~~E~~~~~~lE 320 (518)
+.+++++..+.+.. .++++.|.|+. .+.+..+++++...+.+..+.++.- .+++.+|++++||++|++|++-++
T Consensus 310 dl~~~~i~~~l~~~--~~~vilG~gd~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD~~lmPSrfEPcGL~ql~ 387 (487)
T COG0297 310 DLLLEAIDELLEQG--WQLVLLGTGDPELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGADVILMPSRFEPCGLTQLY 387 (487)
T ss_pred hHHHHHHHHHHHhC--ceEEEEecCcHHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcCCEEEeCCcCcCCcHHHHH
Confidence 99999999998874 99999999943 4778888888877555555555444 899999999999999999999999
Q ss_pred HHHcCCeEEeeCCCC-cccccc--------CCcEEeeC--CHHHHHHHHHHHHhCCCC------CCChHHH-hcCCHHHH
Q 010098 321 ALAMGKIVVCANHPS-NDFFKQ--------FPNCRTYD--GRNGFVEATLKALAEEPA------QPTDAQT-HQLSWESA 382 (518)
Q Consensus 321 Ama~G~PVV~t~~g~-~e~i~~--------~~~g~~~~--d~~~l~~~i~~ll~~~~~------~l~~~~~-~~~sw~~~ 382 (518)
||..|++.|+...|| .+.+.+ ..+|+++. |+++++.+|.+.+.--.. .+..++. ..|||+..
T Consensus 388 amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~~~~~w~~~~~~~m~~d~sw~~s 467 (487)
T COG0297 388 AMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPLLWRKVQPNAMGADFSWDLS 467 (487)
T ss_pred HHHcCCcceEcccCCccceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcccccCchhH
Confidence 999999999999999 666654 58899873 999999999988753222 2222222 79999999
Q ss_pred HHHHHHHHHhcCC
Q 010098 383 TERFLQVAELVGD 395 (518)
Q Consensus 383 ~~~~~~~y~~~~~ 395 (518)
+++|.+.|+....
T Consensus 468 a~~y~~lY~~~~~ 480 (487)
T COG0297 468 AKEYVELYKPLLS 480 (487)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999997663
No 71
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.89 E-value=8.6e-23 Score=212.34 Aligned_cols=260 Identities=11% Similarity=0.064 Sum_probs=174.0
Q ss_pred CCcEEEEcCCchhhhhhchHHHHhhcC--CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEEEEeChh-hh
Q 010098 117 EADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAA-TQ 193 (518)
Q Consensus 117 ~~Dvi~~~~~~~~~~~~~~~~~~~~~~--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~-~~ 193 (518)
..|+|++|++..+ .+ +..+.++.. ++++..|+.++.+........ ...+.+. +. .||.|...+.. .+
T Consensus 131 ~~d~iwihDyhl~-ll--p~~lr~~~~~~~i~~f~HipfP~~e~~~~lp~-~~~ll~~----~l--~~D~igF~t~~~~~ 200 (460)
T cd03788 131 PGDLVWVHDYHLL-LL--PQMLRERGPDARIGFFLHIPFPSSEIFRCLPW-REELLRG----LL--GADLIGFQTERYAR 200 (460)
T ss_pred CCCEEEEeChhhh-HH--HHHHHhhCCCCeEEEEEeCCCCChHHHhhCCC-hHHHHHH----Hh--cCCEEEECCHHHHH
Confidence 4699999998655 23 344544433 789999998876543211111 1111111 11 24666555522 22
Q ss_pred cc--------------------C---CCceecccccCCCCcCcchhhHH-----HhhcCCCCcccEEEEEEeecccCCHH
Q 010098 194 EY--------------------P---NSIVCNVHGVNPKFLEIGEKKME-----QQQNGNKAFTKGAYYIGRMVWSKGYE 245 (518)
Q Consensus 194 ~~--------------------~---~~~~~~~~GVd~~~~~~~~~~~~-----~~~~~~~~~~~~il~vGr~~~~Kg~~ 245 (518)
.+ . .+..+.++|||++.|.+...... +...+...+.++|+++||+.+.||++
T Consensus 201 ~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~~~~~~~~~~~~~~~~~~~il~vgRl~~~Kgi~ 280 (460)
T cd03788 201 NFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPEVQERAAELRERLGGRKLIVGVDRLDYSKGIP 280 (460)
T ss_pred HHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCchhHHHHHHHHHhcCCCEEEEEecCccccCCHH
Confidence 21 0 11233446999887764322111 11123344578999999999999999
Q ss_pred HHHHHHHHHHHhcCC----cEEEEEeCC-----CCh----HHHHHHHHHcCC--------eEEEeC---CCCChHHHHhh
Q 010098 246 ELLGLLNIYHKELAG----LEMDLYGNG-----EDF----DQIQRAAKKLKL--------VVRVYP---GRDHADPIFHD 301 (518)
Q Consensus 246 ~ll~a~~~l~~~~~~----~~l~ivG~g-----~~~----~~l~~~~~~~~l--------~v~~~~---~~~~~~~l~~~ 301 (518)
.+++|+.++.++.|+ ++|+++|.+ ++. +++++++++++. .+.+++ +.++..++|+.
T Consensus 281 ~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~ 360 (460)
T cd03788 281 ERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRA 360 (460)
T ss_pred HHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHh
Confidence 999999999888886 578888753 222 333444433321 244554 34566699999
Q ss_pred cCeeEecCCCCCCchHHHHHHHcCCe----EEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC---CCCh
Q 010098 302 YKVFLNPSTTDVVCTATAEALAMGKI----VVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA---QPTD 371 (518)
Q Consensus 302 adv~v~pS~~E~~~~~~lEAma~G~P----VV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~---~l~~ 371 (518)
||+||+||..|+||++++||||||+| ||+|+.+| .+. +.+|++++ |+++++++|.++++++.. .+.+
T Consensus 361 aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~---~~~g~lv~p~d~~~la~ai~~~l~~~~~e~~~~~~ 437 (460)
T cd03788 361 ADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE---LSGALLVNPYDIDEVADAIHRALTMPLEERRERHR 437 (460)
T ss_pred ccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh---cCCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999 99998876 555 46788874 999999999999998754 4444
Q ss_pred HHH---hcCCHHHHHHHHHHH
Q 010098 372 AQT---HQLSWESATERFLQV 389 (518)
Q Consensus 372 ~~~---~~~sw~~~~~~~~~~ 389 (518)
+++ .+|||+..++++++.
T Consensus 438 ~~~~~v~~~~~~~w~~~~l~~ 458 (460)
T cd03788 438 KLREYVRTHDVQAWANSFLDD 458 (460)
T ss_pred HHHHHHHhCCHHHHHHHHHHh
Confidence 444 789999999998864
No 72
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.89 E-value=7e-22 Score=199.57 Aligned_cols=238 Identities=13% Similarity=0.088 Sum_probs=163.2
Q ss_pred hhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccE
Q 010098 106 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHK 184 (518)
Q Consensus 106 ~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 184 (518)
...+.+++++.+||+||++.+... +. +...++..+ |++...+.... ....+++.+. +|.
T Consensus 79 ~~~l~~~i~~~~pDvVi~~~~~~~-~~--~~~~~~~~~~p~v~~~~~~~~----------------~~~~~~~~~~-~d~ 138 (348)
T TIGR01133 79 VFQARRILKKFKPDAVIGFGGYVS-GP--AGLAAKLLGIPLFHHEQNAVP----------------GLTNKLLSRF-AKK 138 (348)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccc-HH--HHHHHHHcCCCEEEECCCCCc----------------cHHHHHHHHH-hCe
Confidence 445778899999999999976543 22 222333334 66532221110 0123444554 899
Q ss_pred EEEeChhhhccCCCceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEeecccCCHHH-HHHHHHHHHHhcCCcEE
Q 010098 185 VIRLSAATQEYPNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEE-LLGLLNIYHKELAGLEM 263 (518)
Q Consensus 185 vi~~S~~~~~~~~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~-ll~a~~~l~~~~~~~~l 263 (518)
+++.|+..+++.. ..+..+|++..++.+... ....+.+++.++++++|+....|++.. +++++.++.+. +.++
T Consensus 139 ii~~~~~~~~~~~-~~~i~n~v~~~~~~~~~~---~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~--~~~~ 212 (348)
T TIGR01133 139 VLISFPGAKDHFE-AVLVGNPVRQEIRSLPVP---RERFGLREGKPTILVLGGSQGAKILNELVPKALAKLAEK--GIQI 212 (348)
T ss_pred eEECchhHhhcCC-ceEEcCCcCHHHhcccch---hhhcCCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhhc--CcEE
Confidence 9999998887653 345557887665543211 223455556788999998877888654 55888887653 4556
Q ss_pred EEEeCCCChHHHHHHHHHcCCeEEE-eCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-------
Q 010098 264 DLYGNGEDFDQIQRAAKKLKLVVRV-YPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS------- 335 (518)
Q Consensus 264 ~ivG~g~~~~~l~~~~~~~~l~v~~-~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~------- 335 (518)
++++++.+.+.+++.++++++...+ +. ..+..++|+.||++|.+| + |++++|||++|+|+|+++.++
T Consensus 213 ~~~~g~~~~~~l~~~~~~~~l~~~v~~~-~~~~~~~l~~ad~~v~~~---g-~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~ 287 (348)
T TIGR01133 213 VHQTGKNDLEKVKNVYQELGIEAIVTFI-DENMAAAYAAADLVISRA---G-ASTVAELAAAGVPAILIPYPYAADDQYY 287 (348)
T ss_pred EEECCcchHHHHHHHHhhCCceEEecCc-ccCHHHHHHhCCEEEECC---C-hhHHHHHHHcCCCEEEeeCCCCccchhh
Confidence 4444433457888888888875443 33 338889999999999865 2 789999999999999998753
Q ss_pred -ccccccCCcEEeeC----CHHHHHHHHHHHHhCCCC--CCChHHH
Q 010098 336 -NDFFKQFPNCRTYD----GRNGFVEATLKALAEEPA--QPTDAQT 374 (518)
Q Consensus 336 -~e~i~~~~~g~~~~----d~~~l~~~i~~ll~~~~~--~l~~~~~ 374 (518)
.+++.++.+|++++ ++++++++|.++++|++. +|+++++
T Consensus 288 ~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~ 333 (348)
T TIGR01133 288 NAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAMAEAAR 333 (348)
T ss_pred HHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 24788888999873 499999999999998775 6777666
No 73
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.88 E-value=6.5e-21 Score=179.39 Aligned_cols=222 Identities=18% Similarity=0.158 Sum_probs=165.1
Q ss_pred EEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCCCC
Q 010098 8 IAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTSTF 87 (518)
Q Consensus 8 I~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (518)
|+++++.+.|..+|.+.....+++.|.+.| |+|++++. .
T Consensus 1 i~~i~~~~~~~~~G~~~~~~~l~~~L~~~g-~~v~v~~~--------------------~-------------------- 39 (229)
T cd01635 1 ILLVSTPLLPGGGGVELVLLDLAKALARRG-HEVEVVAL--------------------L-------------------- 39 (229)
T ss_pred CeeeccccCCCCCCchhHHHHHHHHHHHcC-CeEEEEEe--------------------c--------------------
Confidence 577888887878898999999999999998 99999851 0
Q ss_pred cccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHH
Q 010098 88 DTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQ 166 (518)
Q Consensus 88 ~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~ 166 (518)
...+.+.+++.+||+||++++...... .....+..+ |++.+.|+.++........
T Consensus 40 ------------------~~~~~~~~~~~~~D~i~~~~~~~~~~~--~~~~~~~~~~~~i~~~h~~~~~~~~~~~~---- 95 (229)
T cd01635 40 ------------------LLLLLRILRGFKPDVVHAHGYYPAPLA--LLLAARLLGIPLVLTVHGVNRSLLEGVPL---- 95 (229)
T ss_pred ------------------hHHHHHHHhhcCCCEEEEcCCCcHHHH--HHHHHhhCCCCEEEEEcCccHhhcccCcH----
Confidence 111344455678999999998777443 112333434 8999999777654322110
Q ss_pred HHHHHHHHHHHhhhhccEEEEeChhhhccCCCceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEeecccCCHHH
Q 010098 167 AFLLEFVNSWLARVHCHKVIRLSAATQEYPNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEE 246 (518)
Q Consensus 167 ~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ 246 (518)
......... ++.. |+|++.++||++.
T Consensus 96 ----~~~~~~~~~--~~~~------------------------------------------------~~g~~~~~k~~~~ 121 (229)
T cd01635 96 ----SLLALSIGL--ADKV------------------------------------------------FVGRLAPEKGLDD 121 (229)
T ss_pred ----HHHHHHHhh--cceE------------------------------------------------EEEeecccCCHHH
Confidence 011111111 1222 9999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCC--eEEEeCCC---CChHHHHhhcCeeEecCCCCCCchHHHHH
Q 010098 247 LLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKL--VVRVYPGR---DHADPIFHDYKVFLNPSTTDVVCTATAEA 321 (518)
Q Consensus 247 ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l--~v~~~~~~---~~~~~l~~~adv~v~pS~~E~~~~~~lEA 321 (518)
+++++..+.++.++++++++|.+.+....+..+.+++. ++.+.+.. +....+++.||++++||..|++|++++||
T Consensus 122 ~~~a~~~l~~~~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Ea 201 (229)
T cd01635 122 LIEAFALLKERGPDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEA 201 (229)
T ss_pred HHHHHHHHHHhCCCeEEEEEeCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHH
Confidence 99999999988899999999998887776664555544 36677763 34446666699999999999999999999
Q ss_pred HHcCCeEEeeCCCC-ccccccCCcEEee
Q 010098 322 LAMGKIVVCANHPS-NDFFKQFPNCRTY 348 (518)
Q Consensus 322 ma~G~PVV~t~~g~-~e~i~~~~~g~~~ 348 (518)
|+||+|||+|+.++ .|++.++.+|+++
T Consensus 202 m~~g~pvi~s~~~~~~e~i~~~~~g~~~ 229 (229)
T cd01635 202 MACGLPVIATDVGGPPEIVEDGLTGLLV 229 (229)
T ss_pred HhCCCCEEEcCCCCcceEEECCCceEEC
Confidence 99999999999997 8889888888863
No 74
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.87 E-value=5.3e-22 Score=179.44 Aligned_cols=155 Identities=18% Similarity=0.238 Sum_probs=133.4
Q ss_pred HhhcCCCCcccEEEEEEeecccCCHHHHHHHHHHHHHh-cCCcEEEEEeCCCChHHHHHHHHHcCCe--EEEeCCCC--C
Q 010098 220 QQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKE-LAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRD--H 294 (518)
Q Consensus 220 ~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~-~~~~~l~ivG~g~~~~~l~~~~~~~~l~--v~~~~~~~--~ 294 (518)
+...+.+.+.+.|+|+|++.+.||++.+++++..+..+ .++++++++|.++....++..++.+++. +.+++... +
T Consensus 6 ~~~~~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 85 (172)
T PF00534_consen 6 REKLKIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDDE 85 (172)
T ss_dssp HHHTTT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHH
T ss_pred HHHcCCCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEcccccccccccccccccccccccccccccccc
Confidence 44555666789999999999999999999999999875 7899999999888888899999988874 77777766 7
Q ss_pred hHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC--CC
Q 010098 295 ADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QP 369 (518)
Q Consensus 295 ~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~--~l 369 (518)
..++|+.||++++||..|+||++++|||+||+|||+++.++ .|++.++.+|++++ |+++++++|.+++++++. .|
T Consensus 86 l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~~~~~~l 165 (172)
T PF00534_consen 86 LDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDPELRQKL 165 (172)
T ss_dssp HHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccceeccccccccccccccccccccccceeeccccCCceeeccccceEEeCCCCHHHHHHHHHHHHCCHHHHHHH
Confidence 77999999999999999999999999999999999999887 99999999999985 889999999999998854 66
Q ss_pred ChHHH
Q 010098 370 TDAQT 374 (518)
Q Consensus 370 ~~~~~ 374 (518)
+++++
T Consensus 166 ~~~~~ 170 (172)
T PF00534_consen 166 GKNAR 170 (172)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66655
No 75
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.87 E-value=3.4e-20 Score=188.86 Aligned_cols=256 Identities=18% Similarity=0.096 Sum_probs=165.1
Q ss_pred CCCCcEEEEcCCchhhhhhchHHHHhhcCCEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEEEEeChhhhc
Q 010098 115 DEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQE 194 (518)
Q Consensus 115 ~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~ 194 (518)
+.+.++++.+.|....+. .. ....++|+.+++.+...... . ..... ..+.+.+. ||.|++.|+..++
T Consensus 100 ~~~~~i~~~~~P~~~~~~---~~--~~~~~~Vyd~~D~~~~~~~~--~----~~~~~-~e~~~~~~-ad~vi~~S~~l~~ 166 (373)
T cd04950 100 GFGRPILWYYTPYTLPVA---AL--LQASLVVYDCVDDLSAFPGG--P----PELLE-AERRLLKR-ADLVFTTSPSLYE 166 (373)
T ss_pred CCCCcEEEEeCccHHHHH---hh--cCCCeEEEEcccchhccCCC--C----HHHHH-HHHHHHHh-CCEEEECCHHHHH
Confidence 445567777666555222 11 22237888888766543311 1 11112 23333333 7999999988877
Q ss_pred cC----CCceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 010098 195 YP----NSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGE 270 (518)
Q Consensus 195 ~~----~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~ 270 (518)
.. .+.....+|+|.+.|.+................+.++|+|++..+++++.+.+++ +..|+++|+++|.++
T Consensus 167 ~~~~~~~~i~~i~ngvd~~~f~~~~~~~~~~~~~~~~~~~~i~y~G~l~~~~d~~ll~~la----~~~p~~~~vliG~~~ 242 (373)
T cd04950 167 AKRRLNPNVVLVPNGVDYEHFAAARDPPPPPADLAALPRPVIGYYGAIAEWLDLELLEALA----KARPDWSFVLIGPVD 242 (373)
T ss_pred HHhhCCCCEEEcccccCHHHhhcccccCCChhHHhcCCCCEEEEEeccccccCHHHHHHHH----HHCCCCEEEEECCCc
Confidence 42 2334455799988776533221100111123468999999999988887665554 456899999999983
Q ss_pred ChHHHHHHHHHcCCeEEEeCCC--CChHHHHhhcCeeEecCC-----CCCCchHHHHHHHcCCeEEeeCCCCccccccCC
Q 010098 271 DFDQIQRAAKKLKLVVRVYPGR--DHADPIFHDYKVFLNPST-----TDVVCTATAEALAMGKIVVCANHPSNDFFKQFP 343 (518)
Q Consensus 271 ~~~~l~~~~~~~~l~v~~~~~~--~~~~~l~~~adv~v~pS~-----~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~ 343 (518)
.......+ .. .-+++++|.. +++..+++.+|++++|+. .+++|++++||||||+|||+|+.+. +.....
T Consensus 243 ~~~~~~~~-~~-~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~~--~~~~~~ 318 (373)
T cd04950 243 VSIDPSAL-LR-LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLPE--VRRYED 318 (373)
T ss_pred CccChhHh-cc-CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcHH--HHhhcC
Confidence 33222222 11 2347788854 577799999999999985 2468999999999999999998754 333334
Q ss_pred cEEee-CCHHHHHHHHHHHHhCCCC-CCChH--HHhcCCHHHHHHHHHHHHH
Q 010098 344 NCRTY-DGRNGFVEATLKALAEEPA-QPTDA--QTHQLSWESATERFLQVAE 391 (518)
Q Consensus 344 ~g~~~-~d~~~l~~~i~~ll~~~~~-~l~~~--~~~~~sw~~~~~~~~~~y~ 391 (518)
++++. +|+++++++|.+++.++.. ...+. ..+.+||++.++++.+..+
T Consensus 319 ~~~~~~~d~~~~~~ai~~~l~~~~~~~~~~~~~~~~~~sW~~~a~~~~~~l~ 370 (373)
T cd04950 319 EVVLIADDPEEFVAAIEKALLEDGPARERRRLRLAAQNSWDARAAEMLEALQ 370 (373)
T ss_pred cEEEeCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 45544 5899999999998766544 22222 2388999999999996654
No 76
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.86 E-value=1.6e-20 Score=194.83 Aligned_cols=270 Identities=14% Similarity=0.023 Sum_probs=175.1
Q ss_pred hHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEEE
Q 010098 108 DITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVI 186 (518)
Q Consensus 108 ~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi 186 (518)
.+.+++++.+||++|+++.+....+ ...+++.+ |++.+-|......... ......+.+++.+. +|.|+
T Consensus 115 ~~~~~l~~~~Pd~v~~~~~~~~~~~---l~~~~~~~ip~vl~~~~~~~~s~~~-------~~~~~~~~r~~~~~-~d~ii 183 (425)
T PRK05749 115 AVRRFLRFWRPKLVIIMETELWPNL---IAELKRRGIPLVLANARLSERSFKR-------YQKFKRFYRLLFKN-IDLVL 183 (425)
T ss_pred HHHHHHHhhCCCEEEEEecchhHHH---HHHHHHCCCCEEEEeccCChhhHHH-------HHHHHHHHHHHHHh-CCEEE
Confidence 4778899999999998865533212 12334444 7766544332111110 01122233333332 79999
Q ss_pred EeChhhhccCCCc-----eecccccCCCCcCcch----hhHHHhhcCCCCcccEEEEEEeecccCCHHHHHHHHHHHHHh
Q 010098 187 RLSAATQEYPNSI-----VCNVHGVNPKFLEIGE----KKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKE 257 (518)
Q Consensus 187 ~~S~~~~~~~~~~-----~~~~~GVd~~~~~~~~----~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~ 257 (518)
++|+..++...+. +..+.+++.+.+.+.. ....+...+ ++.++++++|+ ..|+.+.+++|+.++.++
T Consensus 184 ~~S~~~~~~l~~~g~~~~i~vi~n~~~d~~~~~~~~~~~~~~r~~~~--~~~~vil~~~~--~~~~~~~ll~A~~~l~~~ 259 (425)
T PRK05749 184 AQSEEDAERFLALGAKNEVTVTGNLKFDIEVPPELAARAATLRRQLA--PNRPVWIAAST--HEGEEELVLDAHRALLKQ 259 (425)
T ss_pred ECCHHHHHHHHHcCCCCCcEecccccccCCCChhhHHHHHHHHHHhc--CCCcEEEEeCC--CchHHHHHHHHHHHHHHh
Confidence 9998887742111 2222223332221111 111122232 34577788776 468899999999999888
Q ss_pred cCCcEEEEEeCCCCh-HHHHHHHHHcCCeEE-EeC--------------CCCChHHHHhhcCee-EecCCCCCCchHHHH
Q 010098 258 LAGLEMDLYGNGEDF-DQIQRAAKKLKLVVR-VYP--------------GRDHADPIFHDYKVF-LNPSTTDVVCTATAE 320 (518)
Q Consensus 258 ~~~~~l~ivG~g~~~-~~l~~~~~~~~l~v~-~~~--------------~~~~~~~l~~~adv~-v~pS~~E~~~~~~lE 320 (518)
.|+++|+|+|+|+++ ++++++++++|+... +.+ ...++.++|+.||++ +.+|..|++|.+++|
T Consensus 260 ~~~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~lE 339 (425)
T PRK05749 260 FPNLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNPLE 339 (425)
T ss_pred CCCcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCHHH
Confidence 899999999999886 789999999888532 222 234677999999985 556888999999999
Q ss_pred HHHcCCeEEeeCCC-C-cccccc---CCcEEeeCCHHHHHHHHHHHHhCCCC--CCChHHHhcC-CHHHHHHHHHHHHHh
Q 010098 321 ALAMGKIVVCANHP-S-NDFFKQ---FPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQTHQL-SWESATERFLQVAEL 392 (518)
Q Consensus 321 Ama~G~PVV~t~~g-~-~e~i~~---~~~g~~~~d~~~l~~~i~~ll~~~~~--~l~~~~~~~~-sw~~~~~~~~~~y~~ 392 (518)
|||||+|||+++.. + .|+.+. +..++.++|+++++++|.++++|++. +|++++++.. +....++++++.++.
T Consensus 340 Ama~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~~~~~~~~~~~l~~ 419 (425)
T PRK05749 340 PAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVEDAEDLAKAVTYLLTDPDARQAYGEAGVAFLKQNQGALQRTLQLLEP 419 (425)
T ss_pred HHHhCCCEEECCCccCHHHHHHHHHHCCCeEEECCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 99999999998763 3 554433 22333357999999999999998876 8888888222 124677777777764
No 77
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.86 E-value=1.5e-20 Score=194.08 Aligned_cols=257 Identities=14% Similarity=0.086 Sum_probs=173.3
Q ss_pred CcEEEEcCCchhhhhhchHHHHhhcC--CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEEEEeChhhhc-
Q 010098 118 ADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQE- 194 (518)
Q Consensus 118 ~Dvi~~~~~~~~~~~~~~~~~~~~~~--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~- 194 (518)
-|+|++|+...+ ++ +..+.++.. ++.+..|..++...-..... +... +.+-+. .||.|-..+....+
T Consensus 128 ~d~vwvhDYhl~-l~--p~~lr~~~~~~~igfFlHipfP~~e~f~~lp-~r~~----il~gll--~~dligF~t~~~~~~ 197 (456)
T TIGR02400 128 GDIVWVHDYHLM-LL--PAMLRELGVQNKIGFFLHIPFPSSEIYRTLP-WRRE----LLEGLL--AYDLVGFQTYDDARN 197 (456)
T ss_pred CCEEEEecchhh-HH--HHHHHhhCCCCeEEEEEeCCCCChHHHhhCC-cHHH----HHHHHh--cCCEEEECCHHHHHH
Confidence 489999997655 23 444554433 56688898877644221111 1111 111112 36888888854443
Q ss_pred cC-------------------CC---ceecccccCCCCcCcchhhH--------HHhhcCCCCcccEEEEEEeecccCCH
Q 010098 195 YP-------------------NS---IVCNVHGVNPKFLEIGEKKM--------EQQQNGNKAFTKGAYYIGRMVWSKGY 244 (518)
Q Consensus 195 ~~-------------------~~---~~~~~~GVd~~~~~~~~~~~--------~~~~~~~~~~~~~il~vGr~~~~Kg~ 244 (518)
+. .. ..+.++|||++.|.+..... .+... .+.++|+++||+++.||+
T Consensus 198 Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~vIl~VgRLd~~KGi 274 (456)
T TIGR02400 198 FLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESL---KGRKLIIGVDRLDYSKGL 274 (456)
T ss_pred HHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHc---CCCeEEEEccccccccCH
Confidence 10 01 12334699998775432111 11122 246899999999999999
Q ss_pred HHHHHHHHHHHHhcCC----cEEEEEe-----CCCChHHHHHHHHHc----C-----C---eEEEeCC---CCChHHHHh
Q 010098 245 EELLGLLNIYHKELAG----LEMDLYG-----NGEDFDQIQRAAKKL----K-----L---VVRVYPG---RDHADPIFH 300 (518)
Q Consensus 245 ~~ll~a~~~l~~~~~~----~~l~ivG-----~g~~~~~l~~~~~~~----~-----l---~v~~~~~---~~~~~~l~~ 300 (518)
+.+++|++++.+++|+ +.|+++| ++++.+++++.++++ + . .+.++++ .++..++|+
T Consensus 275 ~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~ 354 (456)
T TIGR02400 275 PERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYR 354 (456)
T ss_pred HHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHH
Confidence 9999999999888886 4577774 344455555555543 1 1 2444443 455669999
Q ss_pred hcCeeEecCCCCCCchHHHHHHHcCCe----EEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC---CCC
Q 010098 301 DYKVFLNPSTTDVVCTATAEALAMGKI----VVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA---QPT 370 (518)
Q Consensus 301 ~adv~v~pS~~E~~~~~~lEAma~G~P----VV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~---~l~ 370 (518)
.||+|++||..||||++++||||||+| +|+|+.+| .+.+. +|++++ |+++++++|.++++++.. +..
T Consensus 355 aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l~---~gllVnP~d~~~lA~aI~~aL~~~~~er~~r~ 431 (456)
T TIGR02400 355 AADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQELN---GALLVNPYDIDGMADAIARALTMPLEEREERH 431 (456)
T ss_pred hCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChHHhC---CcEEECCCCHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999 99998876 66663 688764 999999999999997754 223
Q ss_pred hHHH---hcCCHHHHHHHHHHHH
Q 010098 371 DAQT---HQLSWESATERFLQVA 390 (518)
Q Consensus 371 ~~~~---~~~sw~~~~~~~~~~y 390 (518)
++.+ .++|+...++++++..
T Consensus 432 ~~~~~~v~~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 432 RAMMDKLRKNDVQRWREDFLSDL 454 (456)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHh
Confidence 3223 7799999999988654
No 78
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.85 E-value=1.6e-20 Score=192.25 Aligned_cols=257 Identities=13% Similarity=0.134 Sum_probs=173.5
Q ss_pred hhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccE
Q 010098 106 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHK 184 (518)
Q Consensus 106 ~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 184 (518)
...+.+++++++||+||++.|... +. ........+ |+ +++++++... ..|+.+. +|.
T Consensus 93 ~~~l~~~l~~~kPDvVi~~~p~~~--~~-~l~~~~~~~iP~-~~v~td~~~~-----------------~~w~~~~-~d~ 150 (391)
T PRK13608 93 LNKLINLLIKEKPDLILLTFPTPV--MS-VLTEQFNINIPV-ATVMTDYRLH-----------------KNWITPY-STR 150 (391)
T ss_pred HHHHHHHHHHhCcCEEEECCcHHH--HH-HHHHhcCCCCCE-EEEeCCCCcc-----------------cccccCC-CCE
Confidence 356888899999999999877543 21 111122223 65 4556565211 1233333 899
Q ss_pred EEEeChhhhccCC------Cceeccccc--CCCCcCcchhhHHHhhcCCCCcccE-EEEEEeecccCCHHHHHHHHHHHH
Q 010098 185 VIRLSAATQEYPN------SIVCNVHGV--NPKFLEIGEKKMEQQQNGNKAFTKG-AYYIGRMVWSKGYEELLGLLNIYH 255 (518)
Q Consensus 185 vi~~S~~~~~~~~------~~~~~~~GV--d~~~~~~~~~~~~~~~~~~~~~~~~-il~vGr~~~~Kg~~~ll~a~~~l~ 255 (518)
+++.|+.+++... +.+ .+.|+ +..+.........+...+.+++.+. +++.|++...||++.+++++.
T Consensus 151 ~~v~s~~~~~~l~~~gi~~~ki-~v~GiPv~~~f~~~~~~~~~~~~~~l~~~~~~ilv~~G~lg~~k~~~~li~~~~--- 226 (391)
T PRK13608 151 YYVATKETKQDFIDVGIDPSTV-KVTGIPIDNKFETPIDQKQWLIDNNLDPDKQTILMSAGAFGVSKGFDTMITDIL--- 226 (391)
T ss_pred EEECCHHHHHHHHHcCCCHHHE-EEECeecChHhcccccHHHHHHHcCCCCCCCEEEEECCCcccchhHHHHHHHHH---
Confidence 9999988876421 111 12344 3333322223333445566555554 567889988899999999863
Q ss_pred HhcCCcEEEEEeC-CCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 256 KELAGLEMDLYGN-GED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 256 ~~~~~~~l~ivG~-g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
+..++++++++++ ++. .+++++.... ...+.++|..+++.++|+.||++|. ++.|+++.|||+||+|+|+++.
T Consensus 227 ~~~~~~~~vvv~G~~~~l~~~l~~~~~~-~~~v~~~G~~~~~~~~~~~aDl~I~----k~gg~tl~EA~a~G~PvI~~~~ 301 (391)
T PRK13608 227 AKSANAQVVMICGKSKELKRSLTAKFKS-NENVLILGYTKHMNEWMASSQLMIT----KPGGITISEGLARCIPMIFLNP 301 (391)
T ss_pred hcCCCceEEEEcCCCHHHHHHHHHHhcc-CCCeEEEeccchHHHHHHhhhEEEe----CCchHHHHHHHHhCCCEEECCC
Confidence 3346788876653 321 2344433222 2247788888899999999999996 3568999999999999999964
Q ss_pred -CCc-----cccccCCcEEeeCCHHHHHHHHHHHHhCCCC--CCChHHH---hcCCHHHHHHHHHHHHHhc
Q 010098 334 -PSN-----DFFKQFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQT---HQLSWESATERFLQVAELV 393 (518)
Q Consensus 334 -g~~-----e~i~~~~~g~~~~d~~~l~~~i~~ll~~~~~--~l~~~~~---~~~sw~~~~~~~~~~y~~~ 393 (518)
++. .++.+...|+..+|+++++++|.++++|++. +|+++++ +.++++.+++.+++.++..
T Consensus 302 ~pgqe~~N~~~~~~~G~g~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~l~~l~~~~ 372 (391)
T PRK13608 302 APGQELENALYFEEKGFGKIADTPEEAIKIVASLTNGNEQLTNMISTMEQDKIKYATQTICRDLLDLIGHS 372 (391)
T ss_pred CCCcchhHHHHHHhCCcEEEeCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhh
Confidence 442 3445667787788999999999999998876 8888887 6799999999999988743
No 79
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.84 E-value=4.4e-20 Score=188.61 Aligned_cols=259 Identities=10% Similarity=0.014 Sum_probs=173.1
Q ss_pred hhHHhhcCCCCCcEEEEcCCchhhhh-hchHHHHh--hcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhc
Q 010098 107 GDITEIIPDEEADIAVLEEPEHLTWF-HHGKRWKA--KFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHC 182 (518)
Q Consensus 107 ~~l~~~i~~~~~Dvi~~~~~~~~~~~-~~~~~~~~--~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 182 (518)
..+.++|++++||+||++.|...... .....+.+ ..+ |++.++ +++.... ..|+.+. +
T Consensus 90 ~~l~~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~~~~-tD~~~~~----------------~~w~~~~-~ 151 (382)
T PLN02605 90 REVAKGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFTTVV-TDLGTCH----------------PTWFHKG-V 151 (382)
T ss_pred HHHHHHHHhcCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEEEEE-CCCCCcC----------------cccccCC-C
Confidence 45778899999999999876532110 00111221 123 665544 4542100 1233333 8
Q ss_pred cEEEEeChhhhcc------CCCc-eecccccCCCCcCc-chhhHHHhhcCCCCcccEEEEEEeecccCCHHHHHHHHHHH
Q 010098 183 HKVIRLSAATQEY------PNSI-VCNVHGVNPKFLEI-GEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIY 254 (518)
Q Consensus 183 d~vi~~S~~~~~~------~~~~-~~~~~GVd~~~~~~-~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l 254 (518)
|.+++.|+..++. +.+. .+..++++.++..+ ......+...+++++.++|+++|+....|++..+++++..+
T Consensus 152 d~~~~~s~~~~~~l~~~g~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~ 231 (382)
T PLN02605 152 TRCFCPSEEVAKRALKRGLEPSQIRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDS 231 (382)
T ss_pred CEEEECCHHHHHHHHHcCCCHHHEEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHh
Confidence 9999999877663 2222 22223555555432 23334566778888889999999999999999999999765
Q ss_pred HH----hcCCcE-EEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeE
Q 010098 255 HK----ELAGLE-MDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIV 328 (518)
Q Consensus 255 ~~----~~~~~~-l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PV 328 (518)
.. ..++.+ ++++|.++. .+.+++. ..+..++++|..+++.++|+.||++|.++ .|++++||||||+||
T Consensus 232 ~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~--~~~~~v~~~G~~~~~~~l~~aaDv~V~~~----g~~ti~EAma~g~Pv 305 (382)
T PLN02605 232 LYDKNLGKPIGQVVVICGRNKKLQSKLESR--DWKIPVKVRGFVTNMEEWMGACDCIITKA----GPGTIAEALIRGLPI 305 (382)
T ss_pred hccccccCCCceEEEEECCCHHHHHHHHhh--cccCCeEEEeccccHHHHHHhCCEEEECC----CcchHHHHHHcCCCE
Confidence 31 135565 566776532 3444443 12345788898999999999999999865 488999999999999
Q ss_pred EeeCC------CCccccccCCcEEeeCCHHHHHHHHHHHHhC-CCC--CCChHHH---hcCCHHHHHHHHHHH
Q 010098 329 VCANH------PSNDFFKQFPNCRTYDGRNGFVEATLKALAE-EPA--QPTDAQT---HQLSWESATERFLQV 389 (518)
Q Consensus 329 V~t~~------g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~~-~~~--~l~~~~~---~~~sw~~~~~~~~~~ 389 (518)
|+++. ++.+.+.++..|+...|+++++++|.++++| ++. +|+++++ ...+++.+++.+.+.
T Consensus 306 I~~~~~pgqe~gn~~~i~~~g~g~~~~~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~~a~~~i~~~l~~~ 378 (382)
T PLN02605 306 ILNGYIPGQEEGNVPYVVDNGFGAFSESPKEIARIVAEWFGDKSDELEAMSENALKLARPEAVFDIVHDLHEL 378 (382)
T ss_pred EEecCCCccchhhHHHHHhCCceeecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 99984 3344455566677778999999999999988 554 7777777 456667777666544
No 80
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.81 E-value=1.3e-19 Score=198.41 Aligned_cols=265 Identities=12% Similarity=0.034 Sum_probs=174.0
Q ss_pred CcEEEEcCCchhhhhhchHHHHhhcC--CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEEEEeChhhhc-
Q 010098 118 ADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQE- 194 (518)
Q Consensus 118 ~Dvi~~~~~~~~~~~~~~~~~~~~~~--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~- 194 (518)
-|+|.+|+...+ .+ ...+.++.. ++.+..|+.+|.+.-...... ...+++.+ . .||.|-+.+....+
T Consensus 148 ~d~vWvhDYhL~-ll--p~~lR~~~~~~~igfFlHiPFPs~e~fr~lp~-r~~il~gl----l--~aDligF~t~~y~r~ 217 (797)
T PLN03063 148 GDVVWCHDYHLM-FL--PQYLKEYNNKMKVGWFLHTPFPSSEIYKTLPS-RSELLRAV----L--TADLIGFHTYDFARH 217 (797)
T ss_pred CCEEEEecchhh-hH--HHHHHHhCCCCcEEEEecCCCCCHHHHhhCCC-HHHHHHHH----h--cCCEEEeCCHHHHHH
Confidence 389999996554 33 444555544 688889988887653322221 11122111 1 24555555533322
Q ss_pred -----------------c--C---CCceecccccCCCCcCcchhhH-----HHhhcCCCCcccEEEEEEeecccCCHHHH
Q 010098 195 -----------------Y--P---NSIVCNVHGVNPKFLEIGEKKM-----EQQQNGNKAFTKGAYYIGRMVWSKGYEEL 247 (518)
Q Consensus 195 -----------------~--~---~~~~~~~~GVd~~~~~~~~~~~-----~~~~~~~~~~~~~il~vGr~~~~Kg~~~l 247 (518)
+ . .+..+.++|||+..|.+..... .........+.++|+++||+++.||++.+
T Consensus 218 Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~lIl~VgRLd~~KGi~~l 297 (797)
T PLN03063 218 FLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRFFAGRKVILGVDRLDMIKGIPQK 297 (797)
T ss_pred HHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhcCCCeEEEEecccccccCHHHH
Confidence 1 1 1122344699987765332111 10101111246899999999999999999
Q ss_pred HHHHHHHHHhcCCcE--EEE--Ee-----CCCChHHHHHHHHHcC--Ce----------EEEeC---CCCChHHHHhhcC
Q 010098 248 LGLLNIYHKELAGLE--MDL--YG-----NGEDFDQIQRAAKKLK--LV----------VRVYP---GRDHADPIFHDYK 303 (518)
Q Consensus 248 l~a~~~l~~~~~~~~--l~i--vG-----~g~~~~~l~~~~~~~~--l~----------v~~~~---~~~~~~~l~~~ad 303 (518)
++|++++.+.+|+++ +++ ++ ++++.+++++.++++. ++ ++++. +.++...+|+.||
T Consensus 298 L~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~AD 377 (797)
T PLN03063 298 YLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITD 377 (797)
T ss_pred HHHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCC
Confidence 999999998888863 333 33 3444556666666553 22 22232 2345559999999
Q ss_pred eeEecCCCCCCchHHHHHHHcCCe----EEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC---CCChHH
Q 010098 304 VFLNPSTTDVVCTATAEALAMGKI----VVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA---QPTDAQ 373 (518)
Q Consensus 304 v~v~pS~~E~~~~~~lEAma~G~P----VV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~---~l~~~~ 373 (518)
+||+||..||+|++++||||||+| +|+|+.+| .+.+ +.+|++++ |+++++++|.++++.+.. ...+..
T Consensus 378 vfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l--~~~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~ 455 (797)
T PLN03063 378 VMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQSL--GAGALLVNPWNITEVSSAIKEALNMSDEERETRHRHN 455 (797)
T ss_pred EEEeCccccccCcchhhHheeecCCCCCEEeeCCcCchhhh--cCCeEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999999999999999999 99999887 6665 45788874 999999999999995543 222222
Q ss_pred H---hcCCHHHHHHHHHHHHHhcC
Q 010098 374 T---HQLSWESATERFLQVAELVG 394 (518)
Q Consensus 374 ~---~~~sw~~~~~~~~~~y~~~~ 394 (518)
+ .+++|...++.+++.++...
T Consensus 456 ~~~v~~~~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 456 FQYVKTHSAQKWADDFMSELNDII 479 (797)
T ss_pred HHhhhhCCHHHHHHHHHHHHHHHh
Confidence 2 88999999999999888654
No 81
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.78 E-value=2.3e-18 Score=173.12 Aligned_cols=212 Identities=17% Similarity=0.195 Sum_probs=155.5
Q ss_pred ccEEEEeChhhhccCCCc---------eecccccCCCCcCcchhhH---HH----hhcCCCCcccEEEEEEeecccCCHH
Q 010098 182 CHKVIRLSAATQEYPNSI---------VCNVHGVNPKFLEIGEKKM---EQ----QQNGNKAFTKGAYYIGRMVWSKGYE 245 (518)
Q Consensus 182 ad~vi~~S~~~~~~~~~~---------~~~~~GVd~~~~~~~~~~~---~~----~~~~~~~~~~~il~vGr~~~~Kg~~ 245 (518)
+|++++.|..+....+.. .....++|...+.+..... .+ ...+.........-+.++.+.||+.
T Consensus 210 ~~~~~~ns~~~~~~f~~~~~~L~~~d~~~~y~ei~~s~~~~~~~~~~~~~~~~~r~~~~v~~~d~~~~siN~~~pgkd~~ 289 (495)
T KOG0853|consen 210 AWKILVNSYFTKRQFKATFVSLSNSDITSTYPEIDGSWFTYGQYESHLELRLPVRLYRGVSGIDRFFPSINRFEPGKDQD 289 (495)
T ss_pred cceEecchhhhhhhhhhhhhhcCCCCcceeeccccchhccccccccchhcccccceeeeecccceEeeeeeecCCCCCce
Confidence 689999987776643222 2222356655544311111 01 1122233345666778899999999
Q ss_pred HHHHHHHHHHHhc-----CCcEEEEEeCC-CC---------hHHHHHHHHHcCCe--EE-EeCCCCChHH--HHhhcC-e
Q 010098 246 ELLGLLNIYHKEL-----AGLEMDLYGNG-ED---------FDQIQRAAKKLKLV--VR-VYPGRDHADP--IFHDYK-V 304 (518)
Q Consensus 246 ~ll~a~~~l~~~~-----~~~~l~ivG~g-~~---------~~~l~~~~~~~~l~--v~-~~~~~~~~~~--l~~~ad-v 304 (518)
.+++++.++.... ++.+++++|+. .+ .+++.++++++++. .. +.....+... +++.++ +
T Consensus 290 l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~~v 369 (495)
T KOG0853|consen 290 LALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKGV 369 (495)
T ss_pred eehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCCchHHHHHHHHhcceE
Confidence 9999999998776 45788888832 11 27788899999874 33 3345555554 444444 6
Q ss_pred eEecCCCCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC-CHH---HHHHHHHHHHhCCCC--CCChHHH---
Q 010098 305 FLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD-GRN---GFVEATLKALAEEPA--QPTDAQT--- 374 (518)
Q Consensus 305 ~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~-d~~---~l~~~i~~ll~~~~~--~l~~~~~--- 374 (518)
|+.|.. |.||++++|||+||+|||+|+.|| .|++.++.+|++.+ +.+ .+++++.++..|++. +|+++++
T Consensus 370 ~~qPa~-E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV 448 (495)
T KOG0853|consen 370 LYQPAN-EHFGIVPIEAMACGLPVVATNNGGPAEIVVHGVTGLLIDPGQEAVAELADALLKLRRDPELWARMGKNGLKRV 448 (495)
T ss_pred EecCCC-CCccceeHHHHhcCCCEEEecCCCceEEEEcCCcceeeCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 777877 999999999999999999999999 99999999999986 666 599999999999998 9999998
Q ss_pred -hcCCHHHHHHHHHHHHHhcC
Q 010098 375 -HQLSWESATERFLQVAELVG 394 (518)
Q Consensus 375 -~~~sw~~~~~~~~~~y~~~~ 394 (518)
+.|||.++.+++.+......
T Consensus 449 ~e~fs~~~~~~ri~~~~~~~~ 469 (495)
T KOG0853|consen 449 KEMFSWQHYSERIASVLGKYL 469 (495)
T ss_pred HHHHhHHHHHHHHHHHhHhcC
Confidence 66999999999999888544
No 82
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.77 E-value=3.3e-17 Score=166.55 Aligned_cols=265 Identities=11% Similarity=0.063 Sum_probs=157.8
Q ss_pred hhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccE
Q 010098 106 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHK 184 (518)
Q Consensus 106 ~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 184 (518)
+..+.+.+++.+||+||+|......+. +...++..+ |++.+-+.. ..+... ..+.... ......+. ||.
T Consensus 75 ~~~l~~~l~~~~pDiv~~~gd~~~~la--~a~aa~~~~ipv~h~~~g~-~s~~~~---~~~~~~~---~r~~~~~~-ad~ 144 (365)
T TIGR00236 75 LEGLEELLLEEKPDIVLVQGDTTTTLA--GALAAFYLQIPVGHVEAGL-RTGDRY---SPMPEEI---NRQLTGHI-ADL 144 (365)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchHHHH--HHHHHHHhCCCEEEEeCCC-CcCCCC---CCCccHH---HHHHHHHH-HHh
Confidence 456888899999999999976444333 344555555 776433221 100000 0000011 11222333 799
Q ss_pred EEEeChhhhccC------CC-ceeccccc-CCCCcCc--chhhHHHhhcCCCCcccEEEEEE-ee-cccCCHHHHHHHHH
Q 010098 185 VIRLSAATQEYP------NS-IVCNVHGV-NPKFLEI--GEKKMEQQQNGNKAFTKGAYYIG-RM-VWSKGYEELLGLLN 252 (518)
Q Consensus 185 vi~~S~~~~~~~------~~-~~~~~~GV-d~~~~~~--~~~~~~~~~~~~~~~~~~il~vG-r~-~~~Kg~~~ll~a~~ 252 (518)
+++.|+..++.. .. ..+..+++ |...... ..........+ .+.+++++.+ +. ...||++.+++++.
T Consensus 145 ~~~~s~~~~~~l~~~G~~~~~I~vign~~~d~~~~~~~~~~~~~~~~~~~--~~~~~vl~~~hr~~~~~k~~~~ll~a~~ 222 (365)
T TIGR00236 145 HFAPTEQAKDNLLRENVKADSIFVTGNTVIDALLTNVEIAYSSPVLSEFG--EDKRYILLTLHRRENVGEPLENIFKAIR 222 (365)
T ss_pred ccCCCHHHHHHHHHcCCCcccEEEeCChHHHHHHHHHhhccchhHHHhcC--CCCCEEEEecCchhhhhhHHHHHHHHHH
Confidence 999998877732 21 22233454 3221111 10111122232 2234556555 43 34589999999999
Q ss_pred HHHHhcCCcEEEEEeCCCChHHHHHHHHHcCC--eEEEeCCCC--ChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeE
Q 010098 253 IYHKELAGLEMDLYGNGEDFDQIQRAAKKLKL--VVRVYPGRD--HADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIV 328 (518)
Q Consensus 253 ~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l--~v~~~~~~~--~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PV 328 (518)
++.+..|++++++.|.+... ....+.+.++. ++.+.+... +...+++.+|+++.+| |..++|||+||+||
T Consensus 223 ~l~~~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S-----g~~~~EA~a~g~Pv 296 (365)
T TIGR00236 223 EIVEEFEDVQIVYPVHLNPV-VREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDS-----GGVQEEAPSLGKPV 296 (365)
T ss_pred HHHHHCCCCEEEEECCCChH-HHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECC-----hhHHHHHHHcCCCE
Confidence 99877888999888653221 11122333332 466777443 4558899999999887 56689999999999
Q ss_pred Eee-CCCC-ccccccCCcEEeeCCHHHHHHHHHHHHhCCCC--CCChHHH---hcCCHHHHHHHHHH
Q 010098 329 VCA-NHPS-NDFFKQFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQT---HQLSWESATERFLQ 388 (518)
Q Consensus 329 V~t-~~g~-~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~~~--~l~~~~~---~~~sw~~~~~~~~~ 388 (518)
|++ +.++ ++.+..+.++++..|++++++++.++++|++. +++++.. ...+++++++.+.+
T Consensus 297 I~~~~~~~~~e~~~~g~~~lv~~d~~~i~~ai~~ll~~~~~~~~~~~~~~~~g~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 297 LVLRDTTERPETVEAGTNKLVGTDKENITKAAKRLLTDPDEYKKMSNASNPYGDGEASERIVEELLN 363 (365)
T ss_pred EECCCCCCChHHHhcCceEEeCCCHHHHHHHHHHHHhChHHHHHhhhcCCCCcCchHHHHHHHHHHh
Confidence 997 5566 78887766555546999999999999998764 4544332 33455555555544
No 83
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.75 E-value=5.9e-18 Score=185.68 Aligned_cols=263 Identities=11% Similarity=0.093 Sum_probs=170.0
Q ss_pred CcEEEEcCCchhhhhhchHHHHhhcC--CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEEEEeChhhhc-
Q 010098 118 ADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQE- 194 (518)
Q Consensus 118 ~Dvi~~~~~~~~~~~~~~~~~~~~~~--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~- 194 (518)
-|+|.+|+...+ .+ +..+.++.. ++-+..|..+|...-..... +...+.+. +. .||.|-..+....+
T Consensus 134 ~d~vwvhDYhl~-l~--p~~lr~~~~~~~igfFlH~pfP~~~~f~~lp-~~~~ll~~----ll--~~Dligf~t~~~~r~ 203 (726)
T PRK14501 134 GDVVWVHDYQLM-LL--PAMLRERLPDARIGFFLHIPFPSFEVFRLLP-WREEILEG----LL--GADLIGFHTYDYVRH 203 (726)
T ss_pred CCEEEEeCchhh-hH--HHHHHhhCCCCcEEEEeeCCCCChHHHhhCC-ChHHHHHH----Hh--cCCeEEeCCHHHHHH
Confidence 489999987665 22 444555543 67778888877543221111 11111111 11 24666655533222
Q ss_pred -------------------cCC---CceecccccCCCCcCcchhhHH----Hhh-cCCCCcccEEEEEEeecccCCHHHH
Q 010098 195 -------------------YPN---SIVCNVHGVNPKFLEIGEKKME----QQQ-NGNKAFTKGAYYIGRMVWSKGYEEL 247 (518)
Q Consensus 195 -------------------~~~---~~~~~~~GVd~~~~~~~~~~~~----~~~-~~~~~~~~~il~vGr~~~~Kg~~~l 247 (518)
+.. +..+.++|||++.|.+...... ... .....+.++|+++||+++.||+..+
T Consensus 204 Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~~il~VgRl~~~Kgi~~~ 283 (726)
T PRK14501 204 FLSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQDLRGRKIILSIDRLDYTKGIPRR 283 (726)
T ss_pred HHHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHHHHHHcCCCEEEEEecCcccccCHHHH
Confidence 111 1223346999987764321111 000 0112346799999999999999999
Q ss_pred HHHHHHHHHhcCC----cEEEEEeCC-----CChHHHHHHHHHc----C--------CeEEEeC---CCCChHHHHhhcC
Q 010098 248 LGLLNIYHKELAG----LEMDLYGNG-----EDFDQIQRAAKKL----K--------LVVRVYP---GRDHADPIFHDYK 303 (518)
Q Consensus 248 l~a~~~l~~~~~~----~~l~ivG~g-----~~~~~l~~~~~~~----~--------l~v~~~~---~~~~~~~l~~~ad 303 (518)
++|++++.+.+|+ ++|+++|.+ ++.+++++.++++ + ..+.++. +.++...+|+.||
T Consensus 284 l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aD 363 (726)
T PRK14501 284 LLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAAD 363 (726)
T ss_pred HHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhcc
Confidence 9999999888886 688888743 2233444444332 2 1244333 3456669999999
Q ss_pred eeEecCCCCCCchHHHHHHHc-----CCeEEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC---CCChH
Q 010098 304 VFLNPSTTDVVCTATAEALAM-----GKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA---QPTDA 372 (518)
Q Consensus 304 v~v~pS~~E~~~~~~lEAma~-----G~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~---~l~~~ 372 (518)
+|++||..||||++++||||| |.||++...|+ .++. +|++++ |+++++++|.++++++.. ...++
T Consensus 364 v~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~----~~llv~P~d~~~la~ai~~~l~~~~~e~~~r~~~ 439 (726)
T PRK14501 364 VALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAELA----EALLVNPNDIEGIAAAIKRALEMPEEEQRERMQA 439 (726)
T ss_pred EEEecccccccCcccceEEEEcCCCCceEEEecccchhHHhC----cCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999 45677767776 5554 477764 999999999999997643 22223
Q ss_pred HH---hcCCHHHHHHHHHHHHHhcC
Q 010098 373 QT---HQLSWESATERFLQVAELVG 394 (518)
Q Consensus 373 ~~---~~~sw~~~~~~~~~~y~~~~ 394 (518)
++ .+|||+..++++++.|+.+.
T Consensus 440 ~~~~v~~~~~~~w~~~~l~~l~~~~ 464 (726)
T PRK14501 440 MQERLRRYDVHKWASDFLDELREAA 464 (726)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 33 78999999999999999764
No 84
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.75 E-value=5.1e-17 Score=165.09 Aligned_cols=261 Identities=12% Similarity=0.036 Sum_probs=163.4
Q ss_pred hhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccE
Q 010098 106 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHK 184 (518)
Q Consensus 106 ~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 184 (518)
...+.+.+++.+||+||+|......+. +...++..+ |++.+.+.... +... .... ....++.+. +|.
T Consensus 77 ~~~l~~~l~~~~pDvV~~~g~~~~~~~--~~~aa~~~~iPvv~~~~g~~s-~~~~-~~~~-------~~r~~~~~~-ad~ 144 (363)
T cd03786 77 LIGLEAVLLEEKPDLVLVLGDTNETLA--AALAAFKLGIPVAHVEAGLRS-FDRG-MPDE-------ENRHAIDKL-SDL 144 (363)
T ss_pred HHHHHHHHHHhCCCEEEEeCCchHHHH--HHHHHHHcCCCEEEEeccccc-CCCC-CCch-------HHHHHHHHH-hhh
Confidence 455777788889999999975433333 333445545 87765543211 1000 0011 112223333 799
Q ss_pred EEEeChhhhccC------CCce-eccccc-CCCCcCcchh--hHHHhhcCCCCcccEEEEEEeecc---cCCHHHHHHHH
Q 010098 185 VIRLSAATQEYP------NSIV-CNVHGV-NPKFLEIGEK--KMEQQQNGNKAFTKGAYYIGRMVW---SKGYEELLGLL 251 (518)
Q Consensus 185 vi~~S~~~~~~~------~~~~-~~~~GV-d~~~~~~~~~--~~~~~~~~~~~~~~~il~vGr~~~---~Kg~~~ll~a~ 251 (518)
+++.|+..++.. .+.+ +..+++ |...+..... ...+...+.++...++++.|+... .||++.+++++
T Consensus 145 ~~~~s~~~~~~l~~~G~~~~kI~vign~v~d~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~al 224 (363)
T cd03786 145 HFAPTEEARRNLLQEGEPPERIFVVGNTMIDALLRLLELAKKELILELLGLLPKKYILVTLHRVENVDDGEQLEEILEAL 224 (363)
T ss_pred ccCCCHHHHHHHHHcCCCcccEEEECchHHHHHHHHHHhhccchhhhhcccCCCCEEEEEeCCccccCChHHHHHHHHHH
Confidence 999998877742 2222 223443 3222111111 111123444444556778888764 79999999999
Q ss_pred HHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCC---eEEEeC--CCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCC
Q 010098 252 NIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKL---VVRVYP--GRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGK 326 (518)
Q Consensus 252 ~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l---~v~~~~--~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~ 326 (518)
.++... ++.+++.|.++..+.+++.++++++ .+.+.+ ..+++..+|+.||++|.+|. | .+.|||++|+
T Consensus 225 ~~l~~~--~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg----g-i~~Ea~~~g~ 297 (363)
T cd03786 225 AELAEE--DVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG----G-IQEEASFLGV 297 (363)
T ss_pred HHHHhc--CCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc----c-HHhhhhhcCC
Confidence 988654 5777777776667888888877753 466665 45667799999999999984 3 5799999999
Q ss_pred eEEeeCCC-C-ccccccCCcEEeeCCHHHHHHHHHHHHhCCCC--CCChHHHhcCCHHHHHHHHHH
Q 010098 327 IVVCANHP-S-NDFFKQFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQTHQLSWESATERFLQ 388 (518)
Q Consensus 327 PVV~t~~g-~-~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~~~--~l~~~~~~~~sw~~~~~~~~~ 388 (518)
|||+++.. . .+.+++|.++.+.+|+++++++|.++++++.. .|. ...|.-.+.++++.+
T Consensus 298 PvI~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~i~~ll~~~~~~~~~~---~~~~~~~~a~~~I~~ 360 (363)
T cd03786 298 PVLNLRDRTERPETVESGTNVLVGTDPEAILAAIEKLLSDEFAYSLMS---INPYGDGNASERIVE 360 (363)
T ss_pred CEEeeCCCCccchhhheeeEEecCCCHHHHHHHHHHHhcCchhhhcCC---CCCCCCCHHHHHHHH
Confidence 99999753 3 67776665444445899999999999998775 443 323333344455444
No 85
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.73 E-value=4.1e-15 Score=139.79 Aligned_cols=270 Identities=14% Similarity=0.094 Sum_probs=176.8
Q ss_pred hhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC--CEEEEEeCChhh--hhhh----hcch--HH-HHHHHHHHHHHHhh
Q 010098 111 EIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLE--YVKR----EKND--RL-QAFLLEFVNSWLAR 179 (518)
Q Consensus 111 ~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~--~~v~~~h~~~~~--~~~~----~~~~--~~-~~~~~~~~~~~~~~ 179 (518)
+.+-+..|||.+-....+.++- +.+.+. |++..+|-.-.. ..+. ...+ .+ +-.+++.+...+..
T Consensus 144 Eai~r~~Pdi~IDtMGY~fs~p-----~~r~l~~~~V~aYvHYP~iS~DML~~l~qrq~s~~l~~~KlaY~rlFa~lY~~ 218 (465)
T KOG1387|consen 144 EAIIRFPPDIFIDTMGYPFSYP-----IFRRLRRIPVVAYVHYPTISTDMLKKLFQRQKSGILVWGKLAYWRLFALLYQS 218 (465)
T ss_pred HHHHhCCchheEecCCCcchhH-----HHHHHccCceEEEEecccccHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHh
Confidence 3456778999887765444222 223333 899888854211 1111 1111 01 11112222112211
Q ss_pred h--hccEEEEeChhhhc----cCCCceecccccCCCCcCcchhhHHHhhcCC-CCcccEEEEEEeecccCCHHHHHHHHH
Q 010098 180 V--HCHKVIRLSAATQE----YPNSIVCNVHGVNPKFLEIGEKKMEQQQNGN-KAFTKGAYYIGRMVWSKGYEELLGLLN 252 (518)
Q Consensus 180 ~--~ad~vi~~S~~~~~----~~~~~~~~~~GVd~~~~~~~~~~~~~~~~~~-~~~~~~il~vGr~~~~Kg~~~ll~a~~ 252 (518)
+ .||.+++.|..+++ ++.+..+.+ .++|...+..+...+. ....+.++++|.+.++||.. +++.+.
T Consensus 219 ~G~~ad~vm~NssWT~nHI~qiW~~~~~~i------VyPPC~~e~lks~~~te~~r~~~ll~l~Q~RPEKnH~-~Lql~A 291 (465)
T KOG1387|consen 219 AGSKADIVMTNSSWTNNHIKQIWQSNTCSI------VYPPCSTEDLKSKFGTEGERENQLLSLAQFRPEKNHK-ILQLFA 291 (465)
T ss_pred ccccceEEEecchhhHHHHHHHhhccceeE------EcCCCCHHHHHHHhcccCCcceEEEEEeecCcccccH-HHHHHH
Confidence 1 58999999987776 344322211 1222222222322222 34578899999999999999 666555
Q ss_pred HHHHhc------CCcEEEEEeCCCCh------HHHHHHHHHcCCe--EEEe--CCCCChHHHHhhcCeeEecCCCCCCch
Q 010098 253 IYHKEL------AGLEMDLYGNGEDF------DQIQRAAKKLKLV--VRVY--PGRDHADPIFHDYKVFLNPSTTDVVCT 316 (518)
Q Consensus 253 ~l~~~~------~~~~l~ivG~g~~~------~~l~~~~~~~~l~--v~~~--~~~~~~~~l~~~adv~v~pS~~E~~~~ 316 (518)
....+. ++++|.++|+.... ..++.++..++++ +.|. .+++++.+++..|.+.|+.-+.|.||+
T Consensus 292 l~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGI 371 (465)
T KOG1387|consen 292 LYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKATIGVHTMWNEHFGI 371 (465)
T ss_pred HHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEecCCHHHHHHHhccceeehhhhhhhhcch
Confidence 443333 45899999996653 4567778888876 3343 378888899999999999999999999
Q ss_pred HHHHHHHcCCeEEeeCCCC--cccccc---CCcEEeeCCHHHHHHHHHHHHhCCCC---CCChHHH---hcCCHHHHHHH
Q 010098 317 ATAEALAMGKIVVCANHPS--NDFFKQ---FPNCRTYDGRNGFVEATLKALAEEPA---QPTDAQT---HQLSWESATER 385 (518)
Q Consensus 317 ~~lEAma~G~PVV~t~~g~--~e~i~~---~~~g~~~~d~~~l~~~i~~ll~~~~~---~l~~~~~---~~~sw~~~~~~ 385 (518)
.+.|+||+|+-.|+.+.|| -+++.+ ..+|++..+.++.+++|.+++..... .|+++|| .+|+=....+.
T Consensus 372 sVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE~~F~kd 451 (465)
T KOG1387|consen 372 SVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLAPTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGELKFDKD 451 (465)
T ss_pred hHHHHHhcCceEEEeCCCCCceeeeeccCCccceeecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 9999999999999999988 677754 56899999999999999999986554 6677777 67776666666
Q ss_pred HHHHHHh
Q 010098 386 FLQVAEL 392 (518)
Q Consensus 386 ~~~~y~~ 392 (518)
+...+..
T Consensus 452 ~~~~i~k 458 (465)
T KOG1387|consen 452 WENPICK 458 (465)
T ss_pred HhHHHHH
Confidence 6555553
No 86
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.73 E-value=8.8e-17 Score=164.43 Aligned_cols=245 Identities=13% Similarity=0.049 Sum_probs=153.2
Q ss_pred hhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccE
Q 010098 106 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHK 184 (518)
Q Consensus 106 ~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 184 (518)
...+.+++++.+||+||++..... +.. ....+++.+ |++...+.. .+.. . ....++. .+. +|.
T Consensus 74 ~~~~~~~l~~~kPdivi~~~~~~~-~~~-~a~~a~~~~ip~i~~~~~~--~~~~--~--------~~~~~~~-~~~-~d~ 137 (380)
T PRK00025 74 RRRLKRRLLAEPPDVFIGIDAPDF-NLR-LEKKLRKAGIPTIHYVSPS--VWAW--R--------QGRAFKI-AKA-TDH 137 (380)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCC-CHH-HHHHHHHCCCCEEEEeCCc--hhhc--C--------chHHHHH-HHH-Hhh
Confidence 456788899999999999864322 111 122333334 776554421 1100 0 0111222 232 799
Q ss_pred EEEeChhhhccCCCc-e-ecccccCCC-CcC-cchhhHHHhhcCCCCcccEEE-EEE-eeccc-CCHHHHHHHHHHHHHh
Q 010098 185 VIRLSAATQEYPNSI-V-CNVHGVNPK-FLE-IGEKKMEQQQNGNKAFTKGAY-YIG-RMVWS-KGYEELLGLLNIYHKE 257 (518)
Q Consensus 185 vi~~S~~~~~~~~~~-~-~~~~GVd~~-~~~-~~~~~~~~~~~~~~~~~~~il-~vG-r~~~~-Kg~~~ll~a~~~l~~~ 257 (518)
+++.|+..+++..+. . +.+.|.+.. .+. .......+...+.+++.++++ +.| +.... ++++.+++++..+.++
T Consensus 138 i~~~~~~~~~~~~~~g~~~~~~G~p~~~~~~~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~ 217 (380)
T PRK00025 138 VLALFPFEAAFYDKLGVPVTFVGHPLADAIPLLPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQR 217 (380)
T ss_pred heeCCccCHHHHHhcCCCeEEECcCHHHhcccccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999998776643221 1 222343321 111 112223344566655566544 444 33333 4578999999999888
Q ss_pred cCCcEEEEEeC-CCChHHHHHHHHHc-CCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEee----
Q 010098 258 LAGLEMDLYGN-GEDFDQIQRAAKKL-KLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCA---- 331 (518)
Q Consensus 258 ~~~~~l~ivG~-g~~~~~l~~~~~~~-~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t---- 331 (518)
.|+++++++|+ ++..+++++.++++ ++.+.++. .+..++|+.||++|.+| |.+++|||+||+|+|++
T Consensus 218 ~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~aDl~v~~s-----G~~~lEa~a~G~PvI~~~~~~ 290 (380)
T PRK00025 218 YPDLRFVLPLVNPKRREQIEEALAEYAGLEVTLLD--GQKREAMAAADAALAAS-----GTVTLELALLKVPMVVGYKVS 290 (380)
T ss_pred CCCeEEEEecCChhhHHHHHHHHhhcCCCCeEEEc--ccHHHHHHhCCEEEECc-----cHHHHHHHHhCCCEEEEEccC
Confidence 88999999986 55567788888877 66665544 47889999999999987 88889999999999987
Q ss_pred -------------CCCC-ccccccCC--cEEee--CCHHHHHHHHHHHHhCCCC--CCChHH
Q 010098 332 -------------NHPS-NDFFKQFP--NCRTY--DGRNGFVEATLKALAEEPA--QPTDAQ 373 (518)
Q Consensus 332 -------------~~g~-~e~i~~~~--~g~~~--~d~~~l~~~i~~ll~~~~~--~l~~~~ 373 (518)
+.++ ++++.++. .+++. .|++++++++.++++|++. +|++++
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 352 (380)
T PRK00025 291 PLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGARRQALLEGF 352 (380)
T ss_pred HHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 2223 45555543 33443 3899999999999998875 555543
No 87
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.70 E-value=5.9e-16 Score=155.07 Aligned_cols=237 Identities=12% Similarity=0.011 Sum_probs=143.6
Q ss_pred HHhhcCCCCC-cEEEEcCCchhhh-h-hchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccE
Q 010098 109 ITEIIPDEEA-DIAVLEEPEHLTW-F-HHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHK 184 (518)
Q Consensus 109 l~~~i~~~~~-Dvi~~~~~~~~~~-~-~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 184 (518)
+...+...++ |+||+++|...+. + .......++.+ |+|.++|+.++..... ... ..+ ...++.+. ||.
T Consensus 55 ~~~~~~~~~~~Dvv~~~~P~~~~~~~~~~~~~~~k~~~~k~i~~ihD~~~~~~~~--~~~----~~~-~~~~~~~~-aD~ 126 (333)
T PRK09814 55 LDGILASLKPGDIVIFQFPTWNGFEFDRLFVDKLKKKQVKIIILIHDIEPLRFDS--NYY----LMK-EEIDMLNL-ADV 126 (333)
T ss_pred HHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHHHcCCEEEEEECCcHHHhccc--cch----hhH-HHHHHHHh-CCE
Confidence 3445555667 9999999876532 1 11111223334 8999999877543211 111 122 22333333 899
Q ss_pred EEEeChhhhccCCCcee-cccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEE
Q 010098 185 VIRLSAATQEYPNSIVC-NVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEM 263 (518)
Q Consensus 185 vi~~S~~~~~~~~~~~~-~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l 263 (518)
+|+.|+.+++...+... ...-++...|+........ ......+.++|+|++...+++ ....++++|
T Consensus 127 iI~~S~~~~~~l~~~g~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~i~yaG~l~k~~~l----------~~~~~~~~l 193 (333)
T PRK09814 127 LIVHSKKMKDRLVEEGLTTDKIIVQGIFDYLNDIELV---KTPSFQKKINFAGNLEKSPFL----------KNWSQGIKL 193 (333)
T ss_pred EEECCHHHHHHHHHcCCCcCceEeccccccccccccc---ccccCCceEEEecChhhchHH----------HhcCCCCeE
Confidence 99999988885432211 0010111222211100000 112235689999999843321 113467999
Q ss_pred EEEeCCCChHHHHHHHHHcCCeEEEeCCCC--ChHHHHhhcCeeEecC-C----------CCCCchHHHHHHHcCCeEEe
Q 010098 264 DLYGNGEDFDQIQRAAKKLKLVVRVYPGRD--HADPIFHDYKVFLNPS-T----------TDVVCTATAEALAMGKIVVC 330 (518)
Q Consensus 264 ~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~--~~~~l~~~adv~v~pS-~----------~E~~~~~~lEAma~G~PVV~ 330 (518)
+++|+|++.+ ...-++++.|..+ +..++|+. |+.+.+. . .-.+|.++.|+||||+|||+
T Consensus 194 ~i~G~g~~~~-------~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~ 265 (333)
T PRK09814 194 TVFGPNPEDL-------ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIV 265 (333)
T ss_pred EEECCCcccc-------ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEE
Confidence 9999998654 2233577877544 44477777 5443332 1 13589999999999999999
Q ss_pred eCCCC-ccccccCCcEEeeCCHHHHHHHHHHHHhCCCCCCChHHH
Q 010098 331 ANHPS-NDFFKQFPNCRTYDGRNGFVEATLKALAEEPAQPTDAQT 374 (518)
Q Consensus 331 t~~g~-~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~~~~l~~~~~ 374 (518)
++.++ .++++++.+|+++++.+++++++.++.++.-.+|+++++
T Consensus 266 ~~~~~~~~~V~~~~~G~~v~~~~el~~~l~~~~~~~~~~m~~n~~ 310 (333)
T PRK09814 266 WSKAAIADFIVENGLGFVVDSLEELPEIIDNITEEEYQEMVENVK 310 (333)
T ss_pred CCCccHHHHHHhCCceEEeCCHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99987 999999999999999999999999853322126666665
No 88
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.68 E-value=6.4e-17 Score=139.93 Aligned_cols=131 Identities=24% Similarity=0.280 Sum_probs=95.2
Q ss_pred ccEEEEEEeecccCCHHHHHH-HHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEe
Q 010098 229 TKGAYYIGRMVWSKGYEELLG-LLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLN 307 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~~ll~-a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~ 307 (518)
.+.++++|++.+.|+++.+++ ++.++.++.|+++|.++|.+++ +++++ . ..++++++..++..++++.||+.+.
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~--~l~~~-~--~~~v~~~g~~~e~~~~l~~~dv~l~ 76 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD--ELKRL-R--RPNVRFHGFVEELPEILAAADVGLI 76 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS---HHCCH-H--HCTEEEE-S-HHHHHHHHC-SEEEE
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH--HHHHh-c--CCCEEEcCCHHHHHHHHHhCCEEEE
Confidence 467889999999999999999 9999999999999999999776 35444 1 2268888887777799999999999
Q ss_pred cCC-CCCCchHHHHHHHcCCeEEeeCCCCccccccCCcE-EeeCCHHHHHHHHHHHHhC
Q 010098 308 PST-TDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNC-RTYDGRNGFVEATLKALAE 364 (518)
Q Consensus 308 pS~-~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g-~~~~d~~~l~~~i~~ll~~ 364 (518)
|+. .+++|++++|||++|+|||+++.+..+++.....+ ++.+|+++++++|.++++|
T Consensus 77 p~~~~~~~~~k~~e~~~~G~pvi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 77 PSRFNEGFPNKLLEAMAAGKPVIASDNGAEGIVEEDGCGVLVANDPEELAEAIERLLND 135 (135)
T ss_dssp -BSS-SCC-HHHHHHHCTT--EEEEHHHCHCHS---SEEEE-TT-HHHHHHHHHHHHH-
T ss_pred EeeCCCcCcHHHHHHHHhCCCEEECCcchhhheeecCCeEEECCCHHHHHHHHHHHhcC
Confidence 985 77899999999999999999999555566544444 4457999999999999876
No 89
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=7.4e-15 Score=146.29 Aligned_cols=205 Identities=20% Similarity=0.274 Sum_probs=155.4
Q ss_pred ccEEEEeChhhhcc-----CC-CceecccccCCCCcCcchhhHHHhhcCCCCc--ccEEEEEEeecccCCHHHHHHHHHH
Q 010098 182 CHKVIRLSAATQEY-----PN-SIVCNVHGVNPKFLEIGEKKMEQQQNGNKAF--TKGAYYIGRMVWSKGYEELLGLLNI 253 (518)
Q Consensus 182 ad~vi~~S~~~~~~-----~~-~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~--~~~il~vGr~~~~Kg~~~ll~a~~~ 253 (518)
++.+++.+...... .. ......++++...+... ......+ ...++++|++.+.||++.+++++..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~ 223 (381)
T COG0438 151 ADRVIAVSPALKELLEALGVPNKIVVIPNGIDTEKFAPA-------RIGLLPEGGKFVVLYVGRLDPEKGLDLLIEAAAK 223 (381)
T ss_pred ccEEEECCHHHHHHHHHhCCCCCceEecCCcCHHHcCcc-------ccCCCcccCceEEEEeeccChhcCHHHHHHHHHH
Confidence 58888888665432 11 22233346666554432 1111222 3689999999999999999999999
Q ss_pred HHHhcCCcEEEEEeCCCC-hHHHHHHHHHcCC--eEEEeCCCC--ChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeE
Q 010098 254 YHKELAGLEMDLYGNGED-FDQIQRAAKKLKL--VVRVYPGRD--HADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIV 328 (518)
Q Consensus 254 l~~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l--~v~~~~~~~--~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PV 328 (518)
+....++..+.++|.++. .+.+...+.+++. .+.+.|... +...+++.+|++++||..|+||++++|||++|+||
T Consensus 224 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g~pv 303 (381)
T COG0438 224 LKKRGPDIKLVIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAAGTPV 303 (381)
T ss_pred hhhhcCCeEEEEEcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHhcCCcE
Confidence 988877799999999987 3666667777764 355666554 55578888999999998899999999999999999
Q ss_pred EeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC--CCChHHH----hcCCHHHHHHHHHHHHHhc
Q 010098 329 VCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT----HQLSWESATERFLQVAELV 393 (518)
Q Consensus 329 V~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~--~l~~~~~----~~~sw~~~~~~~~~~y~~~ 393 (518)
|+++.++ .+++.++.+|++++ |.+++++++..++++.+. .+++.++ +.|+|+...+++.+++...
T Consensus 304 i~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (381)
T COG0438 304 IASDVGGIPEVVEDGETGLLVPPGDVEELADALEQLLEDPELREELGEAARERVEEEFSWERIAEQLLELYEEL 377 (381)
T ss_pred EECCCCChHHHhcCCCceEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 9999986 88998877677654 689999999999998843 4443222 6899999999999998854
No 90
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=3.3e-14 Score=133.89 Aligned_cols=357 Identities=15% Similarity=0.114 Sum_probs=210.1
Q ss_pred cEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCC
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTS 85 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (518)
+|+++|.-. . -|-+-++..-|..|++.| ++|+++.-..+...++..-.+++++.. .+
T Consensus 13 ~ra~vvVLG---D-vGRSPRMqYHA~Sla~~g-f~VdliGy~~s~p~e~l~~hprI~ih~------------------m~ 69 (444)
T KOG2941|consen 13 KRAIVVVLG---D-VGRSPRMQYHALSLAKLG-FQVDLIGYVESIPLEELLNHPRIRIHG------------------MP 69 (444)
T ss_pred ceEEEEEec---c-cCCChHHHHHHHHHHHcC-CeEEEEEecCCCChHHHhcCCceEEEe------------------CC
Confidence 666666532 2 344667888999999999 999999652211111110001222211 11
Q ss_pred CCcc-cccCcccccccccccc-hhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhh-hhhhc
Q 010098 86 TFDT-RFYPGKFAADKKSILA-VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEY-VKREK 161 (518)
Q Consensus 86 ~~~i-~~~~~~~~~~~~~i~~-~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~-~~~~~ 161 (518)
..+. ...|.....-.+.... ..-+..++-...+|++.+++|..+..+.....+..-.+ +.+...| +|.-. .....
T Consensus 70 ~l~~~~~~p~~~~l~lKvf~Qfl~Ll~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWH-Ny~Ysl~l~~~ 148 (444)
T KOG2941|consen 70 NLPFLQGGPRVLFLPLKVFWQFLSLLWALFVLRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWH-NYGYSLQLKLK 148 (444)
T ss_pred CCcccCCCchhhhhHHHHHHHHHHHHHHHHhccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEeh-hhHHHHHHHhh
Confidence 1111 1111100000111000 11123333466799999999987765433222322223 7888888 64321 11111
Q ss_pred ch--HHHHHHHHHHHHHHhhhhccEEEEeChhhhccCCCc-e----ec----cc----------------ccCCCCcCc-
Q 010098 162 ND--RLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPNSI-V----CN----VH----------------GVNPKFLEI- 213 (518)
Q Consensus 162 ~~--~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~-~----~~----~~----------------GVd~~~~~~- 213 (518)
.+ ...-.+.++..+.+.+. ||.-+|+|+++++...+. . .. +. +-|...|..
T Consensus 149 ~g~~h~lV~l~~~~E~~fgk~-a~~nLcVT~AMr~dL~qnWgi~ra~v~YDrPps~~~~l~~~H~lf~~l~~d~~~f~ar 227 (444)
T KOG2941|consen 149 LGFQHPLVRLVRWLEKYFGKL-ADYNLCVTKAMREDLIQNWGINRAKVLYDRPPSKPTPLDEQHELFMKLAGDHSPFRAR 227 (444)
T ss_pred cCCCCchHHHHHHHHHHhhcc-cccchhhHHHHHHHHHHhcCCceeEEEecCCCCCCCchhHHHHHHhhhccccchhhhc
Confidence 11 11223445555555665 999999999998621100 0 00 00 111111110
Q ss_pred --chhhHH----Hhhc--C----CCCcccEEEEEEeecccCCHHHHHHHHHHHHHh-------cCCcEEEEEeCCCChHH
Q 010098 214 --GEKKME----QQQN--G----NKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKE-------LAGLEMDLYGNGEDFDQ 274 (518)
Q Consensus 214 --~~~~~~----~~~~--~----~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~-------~~~~~l~ivG~g~~~~~ 274 (518)
..+... ..+. + .+....+++......+..++..|++|+....++ .|.+-.+|.|.|+..+.
T Consensus 228 ~~q~~~~~~taf~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGPlkE~ 307 (444)
T KOG2941|consen 228 EPQDKALERTAFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGPLKEK 307 (444)
T ss_pred ccccchhhhhhHhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCchhHH
Confidence 000000 0000 0 011123344444567889999999999744221 36678888999999999
Q ss_pred HHHHHHHcCCe-EEE---eCCCCChHHHHhhcC--eeEecCC-CCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEE
Q 010098 275 IQRAAKKLKLV-VRV---YPGRDHADPIFHDYK--VFLNPST-TDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCR 346 (518)
Q Consensus 275 l~~~~~~~~l~-v~~---~~~~~~~~~l~~~ad--v~v~pS~-~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~ 346 (518)
..+.++++++. +.+ +...+|.+.+++.|| |++.+|. .-..|+++.+...||+||++-+... .|+++++.||+
T Consensus 308 Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkcl~ELVkh~eNGl 387 (444)
T KOG2941|consen 308 YSQEIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKCLDELVKHGENGL 387 (444)
T ss_pred HHHHHHHhcccceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecchhHHHHHhcCCCce
Confidence 99999999876 333 556788889999999 4555554 4458999999999999999999998 99999999999
Q ss_pred eeCCHHHHHHHHHHHHhCCCC------CCChHHH--hcCCHHHHHHHHH
Q 010098 347 TYDGRNGFVEATLKALAEEPA------QPTDAQT--HQLSWESATERFL 387 (518)
Q Consensus 347 ~~~d~~~l~~~i~~ll~~~~~------~l~~~~~--~~~sw~~~~~~~~ 387 (518)
+++|.+++++.+..++++-+. ++.++.+ +...|+..-++..
T Consensus 388 vF~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~~e~RW~~~W~~~~ 436 (444)
T KOG2941|consen 388 VFEDSEELAEQLQMLFKNFPDNADELNQLKKNLREEQELRWDESWERTA 436 (444)
T ss_pred EeccHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhHHHHHHHhh
Confidence 999999999999999985442 4555555 5666766555443
No 91
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.58 E-value=1.3e-13 Score=141.88 Aligned_cols=182 Identities=13% Similarity=0.078 Sum_probs=131.8
Q ss_pred cccCCCCcCcchhh--------HHHhhcCCCCcccEEEEEEeecccCCHHHHHHHHHHHHHhcCC----cEEEEEeCCCC
Q 010098 204 HGVNPKFLEIGEKK--------MEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAG----LEMDLYGNGED 271 (518)
Q Consensus 204 ~GVd~~~~~~~~~~--------~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~----~~l~ivG~g~~ 271 (518)
.|||++.|...... ..+...+ +.++|++++|+++.||+...++|++++.+++|+ +.|+.+|.+..
T Consensus 255 iGID~~~f~~~~~~~~~~~~~~~lr~~~~---~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr 331 (487)
T TIGR02398 255 VGTDPERIRSALAAASIREMMERIRSELA---GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAA 331 (487)
T ss_pred CEecHHHHHHHhcCchHHHHHHHHHHHcC---CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCc
Confidence 48888776432111 1122233 478999999999999999999999999999996 68999987531
Q ss_pred ---------hHHHHHHHHHcCC--------eEEEe-CC--CCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCC----e
Q 010098 272 ---------FDQIQRAAKKLKL--------VVRVY-PG--RDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGK----I 327 (518)
Q Consensus 272 ---------~~~l~~~~~~~~l--------~v~~~-~~--~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~----P 327 (518)
..++++++.+.+- .+.++ +. .++...+|+.|||++.||..||+.++..|++||+. |
T Consensus 332 ~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~Gv 411 (487)
T TIGR02398 332 SGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGV 411 (487)
T ss_pred ccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCC
Confidence 2455555555421 13443 33 34555899999999999999999999999999998 9
Q ss_pred EEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC----CCChHHH--hcCCHHHHHHHHHHHHH
Q 010098 328 VVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA----QPTDAQT--HQLSWESATERFLQVAE 391 (518)
Q Consensus 328 VV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~----~l~~~~~--~~~sw~~~~~~~~~~y~ 391 (518)
+|.|+.+| .+.+ .++++++ |+++++++|.++++.+.. ++.+... ..++-..-++.+++..+
T Consensus 412 LILSefaGaa~~l---~~AllVNP~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~d~~~W~~~fl~~l~ 481 (487)
T TIGR02398 412 LVLSEFAGAAVEL---KGALLTNPYDPVRMDETIYVALAMPKAEQQARMREMFDAVNYYDVQRWADEFLAAVS 481 (487)
T ss_pred EEEeccccchhhc---CCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhh
Confidence 99999987 6555 3467764 999999999999998775 2222111 55666666666665444
No 92
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.57 E-value=1.7e-13 Score=139.62 Aligned_cols=204 Identities=11% Similarity=0.026 Sum_probs=129.3
Q ss_pred hhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccE
Q 010098 106 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHK 184 (518)
Q Consensus 106 ~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 184 (518)
+..+.+.+++++||+|+++.....++. ....++..+ |++..+. ++... | ....++.+.+. ||.
T Consensus 78 ~~~~~~~l~~~kPd~vi~~g~~~~~~~--~a~aa~~~gip~v~~i~---P~~wa------w----~~~~~r~l~~~-~d~ 141 (385)
T TIGR00215 78 RKEVVQLAKQAKPDLLVGIDAPDFNLT--KELKKKDPGIKIIYYIS---PQVWA------W----RKWRAKKIEKA-TDF 141 (385)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCccHH--HHHHHhhCCCCEEEEeC---CcHhh------c----CcchHHHHHHH-HhH
Confidence 445778899999999999986444433 222334444 6663332 11110 0 01114455554 899
Q ss_pred EEEeChhhhccCCC----ceecccccCCCCcCc-chhhHHHhhcCCCCcccEEEEEE--eecc-cCCHHHHHHHHHHHHH
Q 010098 185 VIRLSAATQEYPNS----IVCNVHGVNPKFLEI-GEKKMEQQQNGNKAFTKGAYYIG--RMVW-SKGYEELLGLLNIYHK 256 (518)
Q Consensus 185 vi~~S~~~~~~~~~----~~~~~~GVd~~~~~~-~~~~~~~~~~~~~~~~~~il~vG--r~~~-~Kg~~~ll~a~~~l~~ 256 (518)
+++.++..+++..+ .....|++....... ..+...++..+.+++.++|+.+| |..+ .|++..+++++..+.+
T Consensus 142 v~~~~~~e~~~~~~~g~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~ 221 (385)
T TIGR00215 142 LLAILPFEKAFYQKKNVPCRFVGHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQ 221 (385)
T ss_pred hhccCCCcHHHHHhcCCCEEEECCchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHH
Confidence 99999887765332 112223332222111 12233344566766677776553 6555 7899999999999988
Q ss_pred hcCCcEEEEEe-CCCChHHHHHHHHHcCCe--EEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeC
Q 010098 257 ELAGLEMDLYG-NGEDFDQIQRAAKKLKLV--VRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCAN 332 (518)
Q Consensus 257 ~~~~~~l~ivG-~g~~~~~l~~~~~~~~l~--v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~ 332 (518)
..|++++++.+ ++...+.+++..+.++.. +.++.+ +..++|+.||++|.+| |.+++|+|+||+|+|...
T Consensus 222 ~~p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~l~aADl~V~~S-----Gt~tlEa~a~G~P~Vv~y 293 (385)
T TIGR00215 222 QEPDLRRVLPVVNFKRRLQFEQIKAEYGPDLQLHLIDG--DARKAMFAADAALLAS-----GTAALEAALIKTPMVVGY 293 (385)
T ss_pred hCCCeEEEEEeCCchhHHHHHHHHHHhCCCCcEEEECc--hHHHHHHhCCEEeecC-----CHHHHHHHHcCCCEEEEE
Confidence 88899887654 444466677766666443 444433 5678999999999999 788889999999988884
No 93
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.51 E-value=9.5e-14 Score=145.33 Aligned_cols=157 Identities=11% Similarity=0.095 Sum_probs=131.7
Q ss_pred ccEEEEEE--eecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCh---HHHHHHHHHcCCe------------------
Q 010098 229 TKGAYYIG--RMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDF---DQIQRAAKKLKLV------------------ 285 (518)
Q Consensus 229 ~~~il~vG--r~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~---~~l~~~~~~~~l~------------------ 285 (518)
...+++++ |+ +.|.++.+|+++.++..+.|+++|.+.|.+.+. +.++++++++++.
T Consensus 319 ~~~~I~v~idrL-~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 397 (519)
T TIGR03713 319 YETEIGFWIDGL-SDEELQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQP 397 (519)
T ss_pred cceEEEEEcCCC-ChHHHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhh
Confidence 45677888 99 999999999999999999999999999987643 5666665655333
Q ss_pred -------------EEEeCCCC--ChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCCccccccCCcEEeeCC
Q 010098 286 -------------VRVYPGRD--HADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDG 350 (518)
Q Consensus 286 -------------v~~~~~~~--~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~~d 350 (518)
+.+.+... ++.+.|..+.++|.+|..|+|+ +++||++.|+|+| +.|..++|.++.||++++|
T Consensus 398 ~~~~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqI--nyg~~~~V~d~~NG~li~d 474 (519)
T TIGR03713 398 ILQTDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQI--NKVETDYVEHNKNGYIIDD 474 (519)
T ss_pred cccchhhcccccEEEEEecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCee--ecCCceeeEcCCCcEEeCC
Confidence 44555566 7779999999999999999999 9999999999999 5556999999999999999
Q ss_pred HHHHHHHHHHHHhCCCC--CCChHHH---hcCCHHHHHHHHHHH
Q 010098 351 RNGFVEATLKALAEEPA--QPTDAQT---HQLSWESATERFLQV 389 (518)
Q Consensus 351 ~~~l~~~i~~ll~~~~~--~l~~~~~---~~~sw~~~~~~~~~~ 389 (518)
..+|++++..+|.++.. +++..+. ++||-+++.+++.+.
T Consensus 475 ~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS~~~i~~kW~~~ 518 (519)
T TIGR03713 475 ISELLKALDYYLDNLKNWNYSLAYSIKLIDDYSSENIIERLNEL 518 (519)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 99999999999999865 5665555 788888888776653
No 94
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.50 E-value=6.3e-13 Score=145.34 Aligned_cols=260 Identities=11% Similarity=0.048 Sum_probs=165.8
Q ss_pred CcEEEEcCCchhhhhhchHHHHhhcC--CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEEEEeChhhhc-
Q 010098 118 ADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQE- 194 (518)
Q Consensus 118 ~Dvi~~~~~~~~~~~~~~~~~~~~~~--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~- 194 (518)
-|+|.+|+...+ ++ ...+.++.. ++-+..|..||...-...... ...+++ -+. .||.|=+.+....+
T Consensus 232 gD~VWVHDYHL~-Ll--P~~LR~~~p~~~IGfFlHiPFPs~Eifr~LP~-r~elL~----glL--~aDlIGFqT~~y~rh 301 (934)
T PLN03064 232 GDVVWCHDYHLM-FL--PKCLKEYNSNMKVGWFLHTPFPSSEIHRTLPS-RSELLR----SVL--AADLVGFHTYDYARH 301 (934)
T ss_pred CCEEEEecchhh-HH--HHHHHHhCCCCcEEEEecCCCCChHHHhhCCc-HHHHHH----HHh--cCCeEEeCCHHHHHH
Confidence 389999986544 33 444555544 677788988876543221211 111111 111 35777777743333
Q ss_pred c-------------------CCCce---ecccccCCCCcCcchhh--------HHHhhcCCCCcccEEEEEEeecccCCH
Q 010098 195 Y-------------------PNSIV---CNVHGVNPKFLEIGEKK--------MEQQQNGNKAFTKGAYYIGRMVWSKGY 244 (518)
Q Consensus 195 ~-------------------~~~~~---~~~~GVd~~~~~~~~~~--------~~~~~~~~~~~~~~il~vGr~~~~Kg~ 244 (518)
+ ..+.+ ..+.|||+..|...... ..+... ...++|++++|+++.||+
T Consensus 302 Fl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~---~g~kiIlgVDRLD~~KGI 378 (934)
T PLN03064 302 FVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELKERF---AGRKVMLGVDRLDMIKGI 378 (934)
T ss_pred HHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHHHHh---CCceEEEEeeccccccCH
Confidence 1 01111 11238888776532111 111122 236799999999999999
Q ss_pred HHHHHHHHHHHHhcCCcE--EEEE-------eCCCChHHH----HHHHHHcCC--------eEEEeC---CCCChHHHHh
Q 010098 245 EELLGLLNIYHKELAGLE--MDLY-------GNGEDFDQI----QRAAKKLKL--------VVRVYP---GRDHADPIFH 300 (518)
Q Consensus 245 ~~ll~a~~~l~~~~~~~~--l~iv-------G~g~~~~~l----~~~~~~~~l--------~v~~~~---~~~~~~~l~~ 300 (518)
...++|++++.+++|+++ ++++ +++++.+++ .+++.+.+- .+.++. +.++...+|+
T Consensus 379 ~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~ 458 (934)
T PLN03064 379 PQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYA 458 (934)
T ss_pred HHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHH
Confidence 999999999988989864 6666 444444443 343333321 133332 3345559999
Q ss_pred hcCeeEecCCCCCCchHHHHHHHc-----CCeEEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCC-C--CC
Q 010098 301 DYKVFLNPSTTDVVCTATAEALAM-----GKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEP-A--QP 369 (518)
Q Consensus 301 ~adv~v~pS~~E~~~~~~lEAma~-----G~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~-~--~l 369 (518)
.||||+.||..||++++..||||| |.+|+ |+..| .+.+ +.++++++ |.++++++|.++++-+. + ..
T Consensus 459 ~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLIL-SEfaGaa~~L--~~~AllVNP~D~~~vA~AI~~AL~M~~~Er~~r 535 (934)
T PLN03064 459 VTDVALVTSLRDGMNLVSYEFVACQDSKKGVLIL-SEFAGAAQSL--GAGAILVNPWNITEVAASIAQALNMPEEEREKR 535 (934)
T ss_pred hCCEEEeCccccccCchHHHHHHhhcCCCCCeEE-eCCCchHHHh--CCceEEECCCCHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999999999999999999 55555 87776 6666 44677765 99999999999998444 3 22
Q ss_pred ChHHH---hcCCHHHHHHHHHHHHHhc
Q 010098 370 TDAQT---HQLSWESATERFLQVAELV 393 (518)
Q Consensus 370 ~~~~~---~~~sw~~~~~~~~~~y~~~ 393 (518)
.+..+ ..++|..-++.+++.....
T Consensus 536 ~~~~~~~V~~~d~~~Wa~~fl~~L~~~ 562 (934)
T PLN03064 536 HRHNFMHVTTHTAQEWAETFVSELNDT 562 (934)
T ss_pred HHHHHhhcccCCHHHHHHHHHHHHHHH
Confidence 22222 7889999999888766644
No 95
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.50 E-value=3.7e-12 Score=135.09 Aligned_cols=164 Identities=10% Similarity=0.078 Sum_probs=127.6
Q ss_pred CCcccEEEEEEeecccCCHHHHHHHHHHHHH--hc--CCcEEEEEeCCCC--------hHHHHHHHHH--cCCeEEEeCC
Q 010098 226 KAFTKGAYYIGRMVWSKGYEELLGLLNIYHK--EL--AGLEMDLYGNGED--------FDQIQRAAKK--LKLVVRVYPG 291 (518)
Q Consensus 226 ~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~--~~--~~~~l~ivG~g~~--------~~~l~~~~~~--~~l~v~~~~~ 291 (518)
+++.+++.+++|+..+||.+++++++.++.+ .. .++++++.|.+.. .+.+.+++++ ...++.|+.+
T Consensus 386 dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~~ 465 (601)
T TIGR02094 386 DPDVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLEN 465 (601)
T ss_pred CCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEcC
Confidence 4567899999999999999999999988864 21 3699999999863 3455566665 3445677766
Q ss_pred CCChH--HHHhhcCeeEe-cCC-CCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC--------------CHH
Q 010098 292 RDHAD--PIFHDYKVFLN-PST-TDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--------------GRN 352 (518)
Q Consensus 292 ~~~~~--~l~~~adv~v~-pS~-~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~--------------d~~ 352 (518)
++..- .+++.||++++ ||. .|++|++-+=||..|.+.+++-.|. .|.. ++.|||.+. |.+
T Consensus 466 Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~-~~~nGf~f~~~~~~~~~~~~d~~da~ 544 (601)
T TIGR02094 466 YDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGY-DGDNGWAIGDGEEYDDEEEQDRLDAE 544 (601)
T ss_pred CCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccC-CCCcEEEECCCccccccccccCCCHH
Confidence 65443 88999999999 999 9999999999999999999998876 5655 678999853 677
Q ss_pred HHHHHHHHHH-----hCCC-----C--CCChHHH-h---cCCHHHHHHHHHHHH
Q 010098 353 GFVEATLKAL-----AEEP-----A--QPTDAQT-H---QLSWESATERFLQVA 390 (518)
Q Consensus 353 ~l~~~i~~ll-----~~~~-----~--~l~~~~~-~---~~sw~~~~~~~~~~y 390 (518)
+|.++|++.+ ++++ . ++.+++. . .|||++++++|.+.|
T Consensus 545 ~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 545 ALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred HHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 8888887655 2222 1 4445555 3 699999999999987
No 96
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.34 E-value=8.1e-11 Score=118.45 Aligned_cols=250 Identities=12% Similarity=0.048 Sum_probs=134.5
Q ss_pred hhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcCCEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEE
Q 010098 106 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKV 185 (518)
Q Consensus 106 ~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v 185 (518)
.....+++++++||+||.+...... .+. ++.++..+-..+|+.... . ...++++.++ ++.+
T Consensus 80 ~~~~~~i~~~~kPdvvi~~Ggy~s~---p~~-~aa~~~~~p~~i~e~n~~------~--------g~~nr~~~~~-a~~v 140 (352)
T PRK12446 80 VMDAYVRIRKLKPDVIFSKGGFVSV---PVV-IGGWLNRVPVLLHESDMT------P--------GLANKIALRF-ASKI 140 (352)
T ss_pred HHHHHHHHHhcCCCEEEecCchhhH---HHH-HHHHHcCCCEEEECCCCC------c--------cHHHHHHHHh-hCEE
Confidence 3445677899999999997754431 112 333333222234433211 0 1124444554 7888
Q ss_pred EEeChhhhc-cCCCceeccccc--CCCCcCcchhhHHHhhcCCCCcccEEEEEEeecccCCHHH-HHHHHHHHHHhcCCc
Q 010098 186 IRLSAATQE-YPNSIVCNVHGV--NPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEE-LLGLLNIYHKELAGL 261 (518)
Q Consensus 186 i~~S~~~~~-~~~~~~~~~~GV--d~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~-ll~a~~~l~~~~~~~ 261 (518)
++.-+...+ ++...+ .+.|. ...+.... ........+.+++.+.|+.+|.-.-.+.+.. +.+++..+. .++
T Consensus 141 ~~~f~~~~~~~~~~k~-~~tG~Pvr~~~~~~~-~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~---~~~ 215 (352)
T PRK12446 141 FVTFEEAAKHLPKEKV-IYTGSPVREEVLKGN-REKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL---LKY 215 (352)
T ss_pred EEEccchhhhCCCCCe-EEECCcCCccccccc-chHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc---cCc
Confidence 776554444 333222 23343 33443222 2223334555566777777765444455533 333444332 246
Q ss_pred EEEEE-eCCCChHHHHHHHHHcCCeEEEeCCC-CChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCC-----
Q 010098 262 EMDLY-GNGEDFDQIQRAAKKLKLVVRVYPGR-DHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP----- 334 (518)
Q Consensus 262 ~l~iv-G~g~~~~~l~~~~~~~~l~v~~~~~~-~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g----- 334 (518)
+++++ |.. +.++... ... ....++.. ++++++|+.||++|.- +-++++.|++++|+|+|....+
T Consensus 216 ~vv~~~G~~-~~~~~~~---~~~-~~~~~~f~~~~m~~~~~~adlvIsr----~G~~t~~E~~~~g~P~I~iP~~~~~~~ 286 (352)
T PRK12446 216 QIVHLCGKG-NLDDSLQ---NKE-GYRQFEYVHGELPDILAITDFVISR----AGSNAIFEFLTLQKPMLLIPLSKFASR 286 (352)
T ss_pred EEEEEeCCc-hHHHHHh---hcC-CcEEecchhhhHHHHHHhCCEEEEC----CChhHHHHHHHcCCCEEEEcCCCCCCC
Confidence 65554 432 2222221 112 23445555 5799999999998854 3488999999999999988542
Q ss_pred C-----ccccccCCcEEeeC----CHHHHHHHHHHHHhCCCCCCChHHHhcCCHHHHHHHHHHHH
Q 010098 335 S-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEPAQPTDAQTHQLSWESATERFLQVA 390 (518)
Q Consensus 335 ~-----~e~i~~~~~g~~~~----d~~~l~~~i~~ll~~~~~~l~~~~~~~~sw~~~~~~~~~~y 390 (518)
+ .+.+.+...+.... +++.+.+++.++++|++. +. ...+.+...+.++++.+..
T Consensus 287 ~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~-~~-~~~~~~~~~~aa~~i~~~i 349 (352)
T PRK12446 287 GDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEK-YK-TALKKYNGKEAIQTIIDHI 349 (352)
T ss_pred chHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHH-HH-HHHHHcCCCCHHHHHHHHH
Confidence 2 33444545555432 788999999999877543 11 1223344444555544443
No 97
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.29 E-value=2.5e-10 Score=113.82 Aligned_cols=238 Identities=16% Similarity=0.138 Sum_probs=143.5
Q ss_pred hhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccE
Q 010098 106 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHK 184 (518)
Q Consensus 106 ~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 184 (518)
.....+.+++.+||+|+....... ..+...+...+ |++.......+. ..+++..+. |+.
T Consensus 80 ~~~a~~il~~~kPd~vig~Ggyvs---~P~~~Aa~~~~iPv~ihEqn~~~G----------------~ank~~~~~-a~~ 139 (357)
T COG0707 80 VLQARKILKKLKPDVVIGTGGYVS---GPVGIAAKLLGIPVIIHEQNAVPG----------------LANKILSKF-AKK 139 (357)
T ss_pred HHHHHHHHHHcCCCEEEecCCccc---cHHHHHHHhCCCCEEEEecCCCcc----------------hhHHHhHHh-hce
Confidence 455677899999999999876554 12222333333 555333322221 124555554 677
Q ss_pred EEEeChhhhccCCC--ceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEeecccCCHHHHH-HHHHHHHHhcCCc
Q 010098 185 VIRLSAATQEYPNS--IVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELL-GLLNIYHKELAGL 261 (518)
Q Consensus 185 vi~~S~~~~~~~~~--~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll-~a~~~l~~~~~~~ 261 (518)
|.+.-+....+..+ .....+.|..++.. .+....+ ..... +.++|+.+|.-.-.+.+..++ ++...+.+ ++
T Consensus 140 V~~~f~~~~~~~~~~~~~~tG~Pvr~~~~~-~~~~~~~-~~~~~-~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~---~~ 213 (357)
T COG0707 140 VASAFPKLEAGVKPENVVVTGIPVRPEFEE-LPAAEVR-KDGRL-DKKTILVTGGSQGAKALNDLVPEALAKLAN---RI 213 (357)
T ss_pred eeeccccccccCCCCceEEecCcccHHhhc-cchhhhh-hhccC-CCcEEEEECCcchhHHHHHHHHHHHHHhhh---Ce
Confidence 76665544444332 22222334445543 2222212 11111 467777776543333343333 33333332 46
Q ss_pred EEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCC-C-----
Q 010098 262 EMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP-S----- 335 (518)
Q Consensus 262 ~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g-~----- 335 (518)
+++...+....++++.....++. +++.+..+++.++|+.||+.|.=+ -++++.|.+++|+|+|--..+ +
T Consensus 214 ~v~~~~G~~~~~~~~~~~~~~~~-~~v~~f~~dm~~~~~~ADLvIsRa----Ga~Ti~E~~a~g~P~IliP~p~~~~~~Q 288 (357)
T COG0707 214 QVIHQTGKNDLEELKSAYNELGV-VRVLPFIDDMAALLAAADLVISRA----GALTIAELLALGVPAILVPYPPGADGHQ 288 (357)
T ss_pred EEEEEcCcchHHHHHHHHhhcCc-EEEeeHHhhHHHHHHhccEEEeCC----cccHHHHHHHhCCCEEEeCCCCCccchH
Confidence 66555443336777777777776 788888999999999999999443 478999999999999988664 2
Q ss_pred ---ccccccCCcEEeeC----CHHHHHHHHHHHHhCCCC--CCChHHH
Q 010098 336 ---NDFFKQFPNCRTYD----GRNGFVEATLKALAEEPA--QPTDAQT 374 (518)
Q Consensus 336 ---~e~i~~~~~g~~~~----d~~~l~~~i~~ll~~~~~--~l~~~~~ 374 (518)
...+++...+.+.+ +++.+.+.|.+++++++. .|.++++
T Consensus 289 ~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~ 336 (357)
T COG0707 289 EYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAK 336 (357)
T ss_pred HHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34556666777764 577999999999998765 7766666
No 98
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.28 E-value=4.3e-12 Score=101.80 Aligned_cols=85 Identities=24% Similarity=0.366 Sum_probs=78.4
Q ss_pred eeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeCCHHHHHHHHHHHHhCCCC--CCChHHH----hc
Q 010098 304 VFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQT----HQ 376 (518)
Q Consensus 304 v~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~~~--~l~~~~~----~~ 376 (518)
++++|+..++++..++|+||||+|||+++.++ .+++.++..++.++|++++.+++..+++|++. +++++++ ++
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~ll~~~~~~~~ia~~a~~~v~~~ 80 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITYNDPEELAEKIEYLLENPEERRRIAKNARERVLKR 80 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999987 88999999999999999999999999999987 8888887 79
Q ss_pred CCHHHHHHHHHH
Q 010098 377 LSWESATERFLQ 388 (518)
Q Consensus 377 ~sw~~~~~~~~~ 388 (518)
|+|++.++++++
T Consensus 81 ~t~~~~~~~il~ 92 (92)
T PF13524_consen 81 HTWEHRAEQILE 92 (92)
T ss_pred CCHHHHHHHHHC
Confidence 999999999874
No 99
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.21 E-value=6.5e-10 Score=114.15 Aligned_cols=101 Identities=11% Similarity=0.049 Sum_probs=66.8
Q ss_pred ChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----cccccc-CCcEE-eeC----CHHHHHHHHHHHH
Q 010098 294 HADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQ-FPNCR-TYD----GRNGFVEATLKAL 362 (518)
Q Consensus 294 ~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~-~~~g~-~~~----d~~~l~~~i~~ll 362 (518)
+..++++.||+.|+||.+|++|.+.+|+.++|+|.|+|+..| .+.+.+ ...|. +++ +.++.++.|.+.+
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~la~~l 541 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQLADFL 541 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHHHHHHH
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 445999999999999999999999999999999999999975 444432 23444 332 6666655555554
Q ss_pred h----CCCC---CCChHHH---hcCCHHHHHHHHHHHHHhcC
Q 010098 363 A----EEPA---QPTDAQT---HQLSWESATERFLQVAELVG 394 (518)
Q Consensus 363 ~----~~~~---~l~~~~~---~~~sw~~~~~~~~~~y~~~~ 394 (518)
. -... .+.+++. +.++|+....-|.++|+.+.
T Consensus 542 ~~f~~~~~rqri~~Rn~ae~LS~~~dW~~~~~yY~~Ay~~AL 583 (633)
T PF05693_consen 542 YKFCQLSRRQRIIQRNRAERLSDLADWKNFGKYYEKAYDLAL 583 (633)
T ss_dssp HHHHT--HHHHHHHHHHHHHHGGGGBHHHHCHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3 2222 2222333 88999999999999999766
No 100
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.13 E-value=5.1e-09 Score=113.41 Aligned_cols=165 Identities=12% Similarity=0.075 Sum_probs=122.0
Q ss_pred CCcccEEEEEEeecccCCHHHHHHHHHHHHHhc----CCcEEEEEeCCCCh--------HHHHHHHH--HcCCeEEEeCC
Q 010098 226 KAFTKGAYYIGRMVWSKGYEELLGLLNIYHKEL----AGLEMDLYGNGEDF--------DQIQRAAK--KLKLVVRVYPG 291 (518)
Q Consensus 226 ~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~----~~~~l~ivG~g~~~--------~~l~~~~~--~~~l~v~~~~~ 291 (518)
+++.++|.|+.|+..+|+.++++..+.++.+-. .++++++.|.+... +.+.++++ +...++.|+.+
T Consensus 475 dpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVvfle~ 554 (778)
T cd04299 475 DPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIVFLED 554 (778)
T ss_pred CCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEEEEcC
Confidence 355668999999999999999999988885521 35999999996531 24445555 22334667676
Q ss_pred CCChH--HHHhhcCeeEecCC--CCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC--------------CHH
Q 010098 292 RDHAD--PIFHDYKVFLNPST--TDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--------------GRN 352 (518)
Q Consensus 292 ~~~~~--~l~~~adv~v~pS~--~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~--------------d~~ 352 (518)
++..- .+++.||++++||+ .|..|++=+=||..|.+-+++-.|. .|.. ++.|||.+. |.+
T Consensus 555 Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~-~g~nGwaig~~~~~~~~~~~d~~da~ 633 (778)
T cd04299 555 YDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGY-DGENGWAIGDGDEYEDDEYQDAEEAE 633 (778)
T ss_pred CCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCcccccc-CCCCceEeCCCccccChhhcchhhHH
Confidence 65433 88999999999999 9999999999999999999998886 6665 789999853 345
Q ss_pred HHHHHHHHHH----hCC------CC--CCChHHH----hcCCHHHHHHHHHHHHH
Q 010098 353 GFVEATLKAL----AEE------PA--QPTDAQT----HQLSWESATERFLQVAE 391 (518)
Q Consensus 353 ~l~~~i~~ll----~~~------~~--~l~~~~~----~~~sw~~~~~~~~~~y~ 391 (518)
+|.+.|++.+ -+. .. +|.+++. ..|||++++++|.+-|=
T Consensus 634 ~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y 688 (778)
T cd04299 634 ALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERFY 688 (778)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhH
Confidence 6666665432 232 22 4444444 48999999999987654
No 101
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.09 E-value=7.3e-09 Score=100.88 Aligned_cols=261 Identities=13% Similarity=0.129 Sum_probs=149.2
Q ss_pred EEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCCC
Q 010098 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 86 (518)
Q Consensus 7 rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (518)
||+|.+++..-...|=-.+.+.+|+.|.++| ++|+.++.... ......+... ++
T Consensus 1 ~i~ir~Da~~~iG~GHv~Rcl~LA~~l~~~g-~~v~f~~~~~~-----------------~~~~~~i~~~-----g~--- 54 (279)
T TIGR03590 1 KILFRADASSEIGLGHVMRCLTLARALHAQG-AEVAFACKPLP-----------------GDLIDLLLSA-----GF--- 54 (279)
T ss_pred CEEEEecCCccccccHHHHHHHHHHHHHHCC-CEEEEEeCCCC-----------------HHHHHHHHHc-----CC---
Confidence 6899999985555665556678889998887 99999987210 1100111111 11
Q ss_pred CcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcCCEEEEEeCChhhhhhhhcchHHH
Q 010098 87 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRLQ 166 (518)
Q Consensus 87 ~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~ 166 (518)
.....+... ........+.+.+++.+||++++.......-+ -..++ ...+.+..+- ++...
T Consensus 55 -~v~~~~~~~----~~~~d~~~~~~~l~~~~~d~vV~D~y~~~~~~--~~~~k-~~~~~l~~iD-D~~~~---------- 115 (279)
T TIGR03590 55 -PVYELPDES----SRYDDALELINLLEEEKFDILIVDHYGLDADW--EKLIK-EFGRKILVID-DLADR---------- 115 (279)
T ss_pred -eEEEecCCC----chhhhHHHHHHHHHhcCCCEEEEcCCCCCHHH--HHHHH-HhCCeEEEEe-cCCCC----------
Confidence 000001100 00001234677788889999998876433222 12222 2244444443 22111
Q ss_pred HHHHHHHHHHHhhhhccEEEEeChhhhc--cC---CCceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEeeccc
Q 010098 167 AFLLEFVNSWLARVHCHKVIRLSAATQE--YP---NSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWS 241 (518)
Q Consensus 167 ~~~~~~~~~~~~~~~ad~vi~~S~~~~~--~~---~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~ 241 (518)
...||.++-.+..... |. ........|.+.-.+.+.-....+......+...+++++|.....
T Consensus 116 ------------~~~~D~vin~~~~~~~~~y~~~~~~~~~~l~G~~Y~~lr~eF~~~~~~~~~~~~~~~iLi~~GG~d~~ 183 (279)
T TIGR03590 116 ------------PHDCDLLLDQNLGADASDYQGLVPANCRLLLGPSYALLREEFYQLATANKRRKPLRRVLVSFGGADPD 183 (279)
T ss_pred ------------CcCCCEEEeCCCCcCHhHhcccCcCCCeEEecchHHhhhHHHHHhhHhhhcccccCeEEEEeCCcCCc
Confidence 0137999888754222 21 111222346543222211111001011111224678889988887
Q ss_pred CCHHHHHHHHHHHHHhcCCcEE-EEEeCC-CChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHH
Q 010098 242 KGYEELLGLLNIYHKELAGLEM-DLYGNG-EDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATA 319 (518)
Q Consensus 242 Kg~~~ll~a~~~l~~~~~~~~l-~ivG~g-~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~l 319 (518)
+....+++++.++. +++++ +++|.+ +..+++++.++..+ ++++++..+++.++|+.||++|.+ .|.++.
T Consensus 184 ~~~~~~l~~l~~~~---~~~~i~vv~G~~~~~~~~l~~~~~~~~-~i~~~~~~~~m~~lm~~aDl~Is~-----~G~T~~ 254 (279)
T TIGR03590 184 NLTLKLLSALAESQ---INISITLVTGSSNPNLDELKKFAKEYP-NIILFIDVENMAELMNEADLAIGA-----AGSTSW 254 (279)
T ss_pred CHHHHHHHHHhccc---cCceEEEEECCCCcCHHHHHHHHHhCC-CEEEEeCHHHHHHHHHHCCEEEEC-----CchHHH
Confidence 76678888886542 34444 356765 34677888777654 577888889999999999999985 478999
Q ss_pred HHHHcCCeEEeeCC
Q 010098 320 EALAMGKIVVCANH 333 (518)
Q Consensus 320 EAma~G~PVV~t~~ 333 (518)
|++++|+|+|+...
T Consensus 255 E~~a~g~P~i~i~~ 268 (279)
T TIGR03590 255 ERCCLGLPSLAICL 268 (279)
T ss_pred HHHHcCCCEEEEEe
Confidence 99999999998765
No 102
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.05 E-value=2e-09 Score=110.42 Aligned_cols=125 Identities=11% Similarity=0.254 Sum_probs=104.4
Q ss_pred ccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCC-CC-ChHHHHhhcCee
Q 010098 229 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPG-RD-HADPIFHDYKVF 305 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~-~~-~~~~l~~~adv~ 305 (518)
...+++++. +..|+++.++.+..|+++|.| |.+.+ ...++++ .++. ++..+.+ .. ++.++|..||++
T Consensus 282 ~~~~l~~t~-------s~~I~~i~~Lv~~lPd~~f~I-ga~te~s~kL~~L-~~y~-nvvly~~~~~~~l~~ly~~~dly 351 (438)
T TIGR02919 282 RKQALILTN-------SDQIEHLEEIVQALPDYHFHI-AALTEMSSKLMSL-DKYD-NVKLYPNITTQKIQELYQTCDIY 351 (438)
T ss_pred cccEEEECC-------HHHHHHHHHHHHhCCCcEEEE-EecCcccHHHHHH-HhcC-CcEEECCcChHHHHHHHHhccEE
Confidence 345666662 899999999999999999999 87776 6788888 6663 4555554 44 677999999999
Q ss_pred EecCCCCCCchHHHHHHHcCCeEEeeCCC-C-ccccccCCcEEee--CCHHHHHHHHHHHHhCCC
Q 010098 306 LNPSTTDVVCTATAEALAMGKIVVCANHP-S-NDFFKQFPNCRTY--DGRNGFVEATLKALAEEP 366 (518)
Q Consensus 306 v~pS~~E~~~~~~lEAma~G~PVV~t~~g-~-~e~i~~~~~g~~~--~d~~~l~~~i~~ll~~~~ 366 (518)
+..|..|++++++.||++.|+||++.+.. + .+++.+ |.++ +|+++|+++|.+++++++
T Consensus 352 Ldin~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~---g~l~~~~~~~~m~~~i~~lL~d~~ 413 (438)
T TIGR02919 352 LDINHGNEILNAVRRAFEYNLLILGFEETAHNRDFIAS---ENIFEHNEVDQLISKLKDLLNDPN 413 (438)
T ss_pred EEccccccHHHHHHHHHHcCCcEEEEecccCCcccccC---CceecCCCHHHHHHHHHHHhcCHH
Confidence 99999999999999999999999999987 3 677766 5554 599999999999999875
No 103
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=99.00 E-value=6.1e-08 Score=95.74 Aligned_cols=251 Identities=12% Similarity=0.035 Sum_probs=156.9
Q ss_pred hHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcCC-EEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEEE
Q 010098 108 DITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRF-VVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVI 186 (518)
Q Consensus 108 ~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~-~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi 186 (518)
.+.+++...+||++++.+.+....+ .....++..| ++....-....+.++. +........+.++ |.|+
T Consensus 114 ~v~rFl~~~~P~l~Ii~EtElWPnl--i~e~~~~~~p~~LvNaRLS~rS~~~y~-------k~~~~~~~~~~~i--~li~ 182 (419)
T COG1519 114 AVRRFLRKWRPKLLIIMETELWPNL--INELKRRGIPLVLVNARLSDRSFARYA-------KLKFLARLLFKNI--DLIL 182 (419)
T ss_pred HHHHHHHhcCCCEEEEEeccccHHH--HHHHHHcCCCEEEEeeeechhhhHHHH-------HHHHHHHHHHHhc--ceee
Confidence 3678888999999888776554333 1223333225 3444443333333221 1222334444554 9999
Q ss_pred EeChhhhccCC----Cceecccc---cCCCCcC--cchhhHHHhhcCCCCcccEEEEEEeecccCCHHHHHHHHHHHHHh
Q 010098 187 RLSAATQEYPN----SIVCNVHG---VNPKFLE--IGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKE 257 (518)
Q Consensus 187 ~~S~~~~~~~~----~~~~~~~G---Vd~~~~~--~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~ 257 (518)
++|+..++... +. +.+.| .|.+.-+ .......+...+. ..++++..++ ...--+.+++++..++++
T Consensus 183 aQse~D~~Rf~~LGa~~-v~v~GNlKfd~~~~~~~~~~~~~~r~~l~~--~r~v~iaaST--H~GEeei~l~~~~~l~~~ 257 (419)
T COG1519 183 AQSEEDAQRFRSLGAKP-VVVTGNLKFDIEPPPQLAAELAALRRQLGG--HRPVWVAAST--HEGEEEIILDAHQALKKQ 257 (419)
T ss_pred ecCHHHHHHHHhcCCcc-eEEecceeecCCCChhhHHHHHHHHHhcCC--CCceEEEecC--CCchHHHHHHHHHHHHhh
Confidence 99988877321 11 11211 2221111 1111112222322 2567666666 333445689999999999
Q ss_pred cCCcEEEEEeCCCCh-HHHHHHHHHcCCeEEEeC----C-----------CCChHHHHhhcCe-eEecCCCCCCchHHHH
Q 010098 258 LAGLEMDLYGNGEDF-DQIQRAAKKLKLVVRVYP----G-----------RDHADPIFHDYKV-FLNPSTTDVVCTATAE 320 (518)
Q Consensus 258 ~~~~~l~ivG~g~~~-~~l~~~~~~~~l~v~~~~----~-----------~~~~~~l~~~adv-~v~pS~~E~~~~~~lE 320 (518)
+|+..++++-..+++ ..+++++++.|+.+.... + .-++..+|..+|+ ||--|..+--|.-++|
T Consensus 258 ~~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN~LE 337 (419)
T COG1519 258 FPNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHNPLE 337 (419)
T ss_pred CCCceEEEecCChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCChhh
Confidence 999999999998884 889999999998755322 1 1133478889995 6666877777999999
Q ss_pred HHHcCCeEEeeCCCC-----ccccccCCcEEeeCCHHHHHHHHHHHHhCCCC--CCChHHH
Q 010098 321 ALAMGKIVVCANHPS-----NDFFKQFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQT 374 (518)
Q Consensus 321 Ama~G~PVV~t~~g~-----~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~~~--~l~~~~~ 374 (518)
++++|+|||.-.+-. .+-+.+...|+.++|.+.++.++..+++|++. +|++++.
T Consensus 338 pa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~~~~~l~~~v~~l~~~~~~r~~~~~~~~ 398 (419)
T COG1519 338 PAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVEDADLLAKAVELLLADEDKREAYGRAGL 398 (419)
T ss_pred HHHcCCCEEeCCccccHHHHHHHHHhcCCeEEECCHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999997753 34445667788899977888888887776543 5555444
No 104
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.86 E-value=1e-07 Score=98.19 Aligned_cols=120 Identities=17% Similarity=0.000 Sum_probs=75.7
Q ss_pred ccEEEEEEeeccc---CCHHHHHHHHHHHHHhcCCcEEE-EEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCe
Q 010098 229 TKGAYYIGRMVWS---KGYEELLGLLNIYHKELAGLEMD-LYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKV 304 (518)
Q Consensus 229 ~~~il~vGr~~~~---Kg~~~ll~a~~~l~~~~~~~~l~-ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv 304 (518)
..+++..|+.... +-...+++++.. . +.+++ ..|...... ....-++.+.+. .+..+++..||+
T Consensus 240 ~~v~v~~Gs~~~~~~~~~~~~~~~a~~~----~-~~~~i~~~g~~~~~~------~~~~~~v~~~~~-~p~~~ll~~~d~ 307 (401)
T cd03784 240 PPVYVGFGSMVVRDPEALARLDVEAVAT----L-GQRAILSLGWGGLGA------EDLPDNVRVVDF-VPHDWLLPRCAA 307 (401)
T ss_pred CcEEEeCCCCcccCHHHHHHHHHHHHHH----c-CCeEEEEccCccccc------cCCCCceEEeCC-CCHHHHhhhhhe
Confidence 4566777877542 233444555532 2 34544 455433222 122223444444 456789999999
Q ss_pred eEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----ccccccCCcEEeeC----CHHHHHHHHHHHHhC
Q 010098 305 FLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAE 364 (518)
Q Consensus 305 ~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~~~~g~~~~----d~~~l~~~i~~ll~~ 364 (518)
+| +-+-..++.||+++|+|+|.....+ .+.+.....|...+ +++++.+++.+++++
T Consensus 308 ~I----~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~ 372 (401)
T cd03784 308 VV----HHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDP 372 (401)
T ss_pred ee----ecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCH
Confidence 99 3344689999999999999997654 34444555565542 789999999999874
No 105
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=98.84 E-value=5.3e-09 Score=93.99 Aligned_cols=168 Identities=20% Similarity=0.176 Sum_probs=84.5
Q ss_pred EEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCCCCcc
Q 010098 10 IFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTSTFDT 89 (518)
Q Consensus 10 ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 89 (518)
+++..+.+..+|++.....++++|.++| |+|+++++........ . .. ..... ...
T Consensus 2 li~~~~~~~~GG~e~~~~~l~~~l~~~G-~~v~v~~~~~~~~~~~----~-------~~----------~~~~~---~~~ 56 (177)
T PF13439_consen 2 LITNIFLPNIGGAERVVLNLARALAKRG-HEVTVVSPGVKDPIEE----E-------LV----------KIFVK---IPY 56 (177)
T ss_dssp EEECC-TTSSSHHHHHHHHHHHHHHHTT--EEEEEESS-TTS-SS----T-------EE----------EE------TT-
T ss_pred EEEEecCCCCChHHHHHHHHHHHHHHCC-CEEEEEEcCCCccchh----h-------cc----------ceeee---eec
Confidence 4556666889999999999999999998 9999998843111000 0 00 00000 000
Q ss_pred cccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcCCEEEEEeCChhh-hhhhhcchHHHHH
Q 010098 90 RFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLE-YVKREKNDRLQAF 168 (518)
Q Consensus 90 ~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~-~~~~~~~~~~~~~ 168 (518)
.. .. ...........+.+.+++.+||+||++.+....+. ..... ..|.+.+.|+.+.. .......+.. ..
T Consensus 57 ~~-~~---~~~~~~~~~~~~~~~i~~~~~DiVh~~~~~~~~~~---~~~~~-~~~~v~~~H~~~~~~~~~~~~~~~~-~~ 127 (177)
T PF13439_consen 57 PI-RK---RFLRSFFFMRRLRRLIKKEKPDIVHIHGPPAFWIA---LLACR-KVPIVYTIHGPYFERRFLKSKLSPY-SY 127 (177)
T ss_dssp SS-TS---S--HHHHHHHHHHHHHHHHT-SEEECCTTHCCCHH---HHHHH-CSCEEEEE-HHH--HHTTTTSCCCH-HH
T ss_pred cc-cc---ccchhHHHHHHHHHHHHHcCCCeEEecccchhHHH---HHhcc-CCCEEEEeCCCcccccccccccchh-hh
Confidence 00 00 01111122455777888889999999987655222 11222 34999999976631 1111111111 11
Q ss_pred HHHHHHHHHhhhhccEEEEeChhhhcc------C-CCceecccccCCCCcC
Q 010098 169 LLEFVNSWLARVHCHKVIRLSAATQEY------P-NSIVCNVHGVNPKFLE 212 (518)
Q Consensus 169 ~~~~~~~~~~~~~ad~vi~~S~~~~~~------~-~~~~~~~~GVd~~~~~ 212 (518)
+.........+ .+|.++++|+..++. + .+..++.+|||.+.|.
T Consensus 128 ~~~~~~~~~~~-~~~~ii~vS~~~~~~l~~~~~~~~ki~vI~ngid~~~F~ 177 (177)
T PF13439_consen 128 LNFRIERKLYK-KADRIIAVSESTKDELIKFGIPPEKIHVIYNGIDTDRFR 177 (177)
T ss_dssp HHHCTTHHHHC-CSSEEEESSHHHHHHHHHHT--SS-EEE----B-CCCH-
T ss_pred hhhhhhhhHHh-cCCEEEEECHHHHHHHHHhCCcccCCEEEECCccHHHcC
Confidence 22222222222 379999999888773 2 3445566899998763
No 106
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.80 E-value=9.7e-07 Score=89.42 Aligned_cols=261 Identities=12% Similarity=0.087 Sum_probs=135.6
Q ss_pred hhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccE
Q 010098 106 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHK 184 (518)
Q Consensus 106 ~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 184 (518)
+..+.+++.+++||+|+++......+- ++..+...+ |++ .+|.....+.. .-...++...+. ||.
T Consensus 82 ~~~~~~~~~~~~Pd~vlv~GD~~~~la--~alaA~~~~IPv~-HveaG~rs~~~----------~eE~~r~~i~~l-a~l 147 (365)
T TIGR03568 82 IIGFSDAFERLKPDLVVVLGDRFEMLA--AAIAAALLNIPIA-HIHGGEVTEGA----------IDESIRHAITKL-SHL 147 (365)
T ss_pred HHHHHHHHHHhCCCEEEEeCCchHHHH--HHHHHHHhCCcEE-EEECCccCCCC----------chHHHHHHHHHH-Hhh
Confidence 456788899999999999985544223 344555555 555 33322111110 011223333444 677
Q ss_pred EEEeChhhhc-cC-----CCceecc--cccCCCC-cCcchhhHHHhhcCCCCcccEE-EEEEeec--ccCCHHHHHHHHH
Q 010098 185 VIRLSAATQE-YP-----NSIVCNV--HGVNPKF-LEIGEKKMEQQQNGNKAFTKGA-YYIGRMV--WSKGYEELLGLLN 252 (518)
Q Consensus 185 vi~~S~~~~~-~~-----~~~~~~~--~GVd~~~-~~~~~~~~~~~~~~~~~~~~~i-l~vGr~~--~~Kg~~~ll~a~~ 252 (518)
.++.++..++ +. ...+.++ .++|.-. .............+.+.+.+++ +.+-+-. .....+.+.+.+.
T Consensus 148 ~f~~t~~~~~~L~~eg~~~~~i~~tG~~~iD~l~~~~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~ 227 (365)
T TIGR03568 148 HFVATEEYRQRVIQMGEDPDRVFNVGSPGLDNILSLDLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLK 227 (365)
T ss_pred ccCCCHHHHHHHHHcCCCCCcEEEECCcHHHHHHhhhccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHH
Confidence 8888866665 21 2222211 2444311 1111222333444544333443 3333322 2333333444444
Q ss_pred HHHHhcCCcEEEEEeCCCChHHHHHHHHHc---CCeEEEeCC--CCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCe
Q 010098 253 IYHKELAGLEMDLYGNGEDFDQIQRAAKKL---KLVVRVYPG--RDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKI 327 (518)
Q Consensus 253 ~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~---~l~v~~~~~--~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~P 327 (518)
.+.+...++.++.-..++..+.+.+.++.+ .-.+++.++ +.+...+++.|+++|--|. | .+.||.++|+|
T Consensus 228 ~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~vitdSS----g-gi~EA~~lg~P 302 (365)
T TIGR03568 228 ALDELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADAVIGNSS----S-GIIEAPSFGVP 302 (365)
T ss_pred HHHHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCEEEEcCh----h-HHHhhhhcCCC
Confidence 443332234332212223333333333332 123677774 5566699999999995442 2 34899999999
Q ss_pred EEeeCCCC-ccccccCCcEEeeC-CHHHHHHHHHHHHhCCCC--CCChHHHhcCCHHHHHHHHHHH
Q 010098 328 VVCANHPS-NDFFKQFPNCRTYD-GRNGFVEATLKALAEEPA--QPTDAQTHQLSWESATERFLQV 389 (518)
Q Consensus 328 VV~t~~g~-~e~i~~~~~g~~~~-d~~~l~~~i~~ll~~~~~--~l~~~~~~~~sw~~~~~~~~~~ 389 (518)
||+- +. +|.+..+.|.+.++ |++++.+++.++++ +.. .+ .....-|...+..+++.++
T Consensus 303 vv~l--~~R~e~~~~g~nvl~vg~~~~~I~~a~~~~~~-~~~~~~~-~~~~~pygdg~as~rI~~~ 364 (365)
T TIGR03568 303 TINI--GTRQKGRLRADSVIDVDPDKEEIVKAIEKLLD-PAFKKSL-KNVKNPYGDGNSSERIIEI 364 (365)
T ss_pred EEee--cCCchhhhhcCeEEEeCCCHHHHHHHHHHHhC-hHHHHHH-hhCCCCCCCChHHHHHHHh
Confidence 9954 45 78888888888665 99999999999543 221 11 1111345555666666543
No 107
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.79 E-value=1.1e-07 Score=97.33 Aligned_cols=181 Identities=17% Similarity=0.047 Sum_probs=114.2
Q ss_pred HHHHhhhhccEEEEeChhhhccCCCc-e-ecccccCC-CCcCcchhhHHHhhcCCCCcccEEE-EEEee--cccCCHHHH
Q 010098 174 NSWLARVHCHKVIRLSAATQEYPNSI-V-CNVHGVNP-KFLEIGEKKMEQQQNGNKAFTKGAY-YIGRM--VWSKGYEEL 247 (518)
Q Consensus 174 ~~~~~~~~ad~vi~~S~~~~~~~~~~-~-~~~~GVd~-~~~~~~~~~~~~~~~~~~~~~~~il-~vGr~--~~~Kg~~~l 247 (518)
+++..+. |+.|++..+...++..+. . +...|-.. +.+..... . +.+++.+.++ +.|.- ...+++..+
T Consensus 154 n~l~~~~-a~~v~~~~~~t~~~l~~~g~k~~~vGnPv~d~l~~~~~----~--~l~~~~~~lllLpGSR~ae~~~~lp~~ 226 (396)
T TIGR03492 154 WLMRSRR-CLAVFVRDRLTARDLRRQGVRASYLGNPMMDGLEPPER----K--PLLTGRFRIALLPGSRPPEAYRNLKLL 226 (396)
T ss_pred HHhhchh-hCEEeCCCHHHHHHHHHCCCeEEEeCcCHHhcCccccc----c--ccCCCCCEEEEECCCCHHHHHccHHHH
Confidence 3444454 999999997777754321 1 11112111 11111111 0 2333334444 44432 335788899
Q ss_pred HHHHHHHHHhcCCcEEEEEe-CCCChHHHHHHHHHcCCe----------------EEEeCCCCChHHHHhhcCeeEecCC
Q 010098 248 LGLLNIYHKELAGLEMDLYG-NGEDFDQIQRAAKKLKLV----------------VRVYPGRDHADPIFHDYKVFLNPST 310 (518)
Q Consensus 248 l~a~~~l~~~~~~~~l~ivG-~g~~~~~l~~~~~~~~l~----------------v~~~~~~~~~~~l~~~adv~v~pS~ 310 (518)
++++..+.++ +++.+++.- ++.+.+.+++..++.+.. +.+.....+..++|+.||+.|..|
T Consensus 227 l~al~~L~~~-~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADlvI~rS- 304 (396)
T TIGR03492 227 LRALEALPDS-QPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADLGIAMA- 304 (396)
T ss_pred HHHHHHHhhC-CCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCEEEECc-
Confidence 9999999766 778877654 445567777766655543 344556678889999999999886
Q ss_pred CCCCchHHHHHHHcCCeEEeeCCCC----cccccc-----CCcEEeeC-CHHHHHHHHHHHHhCCCC
Q 010098 311 TDVVCTATAEALAMGKIVVCANHPS----NDFFKQ-----FPNCRTYD-GRNGFVEATLKALAEEPA 367 (518)
Q Consensus 311 ~E~~~~~~lEAma~G~PVV~t~~g~----~e~i~~-----~~~g~~~~-d~~~l~~~i~~ll~~~~~ 367 (518)
|.+..|++++|+|+|....++ ..+.+. +....+.+ +++.+++++.++++|++.
T Consensus 305 ----Gt~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~~~ 367 (396)
T TIGR03492 305 ----GTATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLADPEL 367 (396)
T ss_pred ----CHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcCHHH
Confidence 677799999999999997443 233333 33333343 789999999999988654
No 108
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.79 E-value=1.5e-07 Score=93.73 Aligned_cols=113 Identities=17% Similarity=0.165 Sum_probs=77.5
Q ss_pred ccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCC-CChHHHHhhcCeeEe
Q 010098 229 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGR-DHADPIFHDYKVFLN 307 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~-~~~~~l~~~adv~v~ 307 (518)
..+++++|..... .+++++ +..++.+++++|.+..... .-++++.... .+..++++.||++|.
T Consensus 193 ~~iLv~~gg~~~~----~~~~~l----~~~~~~~~~v~g~~~~~~~--------~~ni~~~~~~~~~~~~~m~~ad~vIs 256 (318)
T PF13528_consen 193 PKILVYFGGGGPG----DLIEAL----KALPDYQFIVFGPNAADPR--------PGNIHVRPFSTPDFAELMAAADLVIS 256 (318)
T ss_pred CEEEEEeCCCcHH----HHHHHH----HhCCCCeEEEEcCCccccc--------CCCEEEeecChHHHHHHHHhCCEEEE
Confidence 5678899887555 556665 3466789999977531111 3346666644 788899999999996
Q ss_pred cCCCCCCchHHHHHHHcCCeEEeeCCCC-------ccccccCCcEEeeC----CHHHHHHHHHHH
Q 010098 308 PSTTDVVCTATAEALAMGKIVVCANHPS-------NDFFKQFPNCRTYD----GRNGFVEATLKA 361 (518)
Q Consensus 308 pS~~E~~~~~~lEAma~G~PVV~t~~g~-------~e~i~~~~~g~~~~----d~~~l~~~i~~l 361 (518)
-+ --+++.||+++|+|+|+-...+ .+.+++...|...+ +++.+.++|+++
T Consensus 257 ~~----G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 257 KG----GYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred CC----CHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhcC
Confidence 54 2345999999999999997743 33444555555532 778888887753
No 109
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=98.74 E-value=2.4e-07 Score=96.03 Aligned_cols=260 Identities=10% Similarity=0.057 Sum_probs=134.0
Q ss_pred CCcEEEEcCCchhhhhhchHHHHhhcC--CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEEEEeChhhhc
Q 010098 117 EADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQE 194 (518)
Q Consensus 117 ~~Dvi~~~~~~~~~~~~~~~~~~~~~~--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~ 194 (518)
+-|+|.+|+...+ .+ ...+.++.. ++.+..|+.+|...-...... ...+++ -+. .||.|-..+....+
T Consensus 141 ~~D~VWVhDYhL~-ll--P~~LR~~~~~~~IgfFlHiPFPs~e~fr~lP~-r~eiL~----glL--~aDlIgFqt~~~~~ 210 (474)
T PF00982_consen 141 PGDLVWVHDYHLM-LL--PQMLRERGPDARIGFFLHIPFPSSEIFRCLPW-REEILR----GLL--GADLIGFQTFEYAR 210 (474)
T ss_dssp TT-EEEEESGGGT-TH--HHHHHHTT--SEEEEEE-S----HHHHTTSTT-HHHHHH----HHT--TSSEEEESSHHHHH
T ss_pred CCCEEEEeCCcHH-HH--HHHHHhhcCCceEeeEEecCCCCHHHHhhCCc-HHHHHH----Hhh--cCCEEEEecHHHHH
Confidence 4689999987655 23 444555544 577788988876543222221 111111 111 36888888854444
Q ss_pred -c-------------CCC-------cee----cccccCCCCcCcchh--------hHHHhhcCCCCcccEEEEEEeeccc
Q 010098 195 -Y-------------PNS-------IVC----NVHGVNPKFLEIGEK--------KMEQQQNGNKAFTKGAYYIGRMVWS 241 (518)
Q Consensus 195 -~-------------~~~-------~~~----~~~GVd~~~~~~~~~--------~~~~~~~~~~~~~~~il~vGr~~~~ 241 (518)
+ ... ..+ .+.|||++.+..... ...+... ..+.++|+-+.|++..
T Consensus 211 nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~--~~~~~ii~gvDrld~~ 288 (474)
T PF00982_consen 211 NFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKF--KGKRKIIVGVDRLDYT 288 (474)
T ss_dssp HHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHHHT--TT-SEEEEEE--B-GG
T ss_pred HHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhc--CCCcEEEEEeccchhh
Confidence 1 110 011 112777766542111 1111112 2224889999999999
Q ss_pred CCHHHHHHHHHHHHHhcCC----cEEEEEeCCC--C-------hHHHHHHHHHcCC--------eEEEeCC---CCChHH
Q 010098 242 KGYEELLGLLNIYHKELAG----LEMDLYGNGE--D-------FDQIQRAAKKLKL--------VVRVYPG---RDHADP 297 (518)
Q Consensus 242 Kg~~~ll~a~~~l~~~~~~----~~l~ivG~g~--~-------~~~l~~~~~~~~l--------~v~~~~~---~~~~~~ 297 (518)
||+..=+.|++++.+++|+ +.|+-++... + .+++++++.+.+- .+.++.. .++.-.
T Consensus 289 kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~a 368 (474)
T PF00982_consen 289 KGIPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLA 368 (474)
T ss_dssp G-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHH
Confidence 9999999999999998876 5565555411 1 1444444443321 1454442 233448
Q ss_pred HHhhcCeeEecCCCCCCchHHHHHHHcCCe----EEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC-CC
Q 010098 298 IFHDYKVFLNPSTTDVVCTATAEALAMGKI----VVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA-QP 369 (518)
Q Consensus 298 l~~~adv~v~pS~~E~~~~~~lEAma~G~P----VV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~-~l 369 (518)
+|+.||+++.+|..||.-++..|+.+|..+ +|.|...| .+.+.+ .+++++ |.+++|++|.++++-+.. +.
T Consensus 369 ly~~aDv~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefaGaa~~L~~--~al~VNP~d~~~~A~ai~~AL~M~~~Er~ 446 (474)
T PF00982_consen 369 LYRAADVALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFAGAAEQLSE--AALLVNPWDIEEVADAIHEALTMPPEERK 446 (474)
T ss_dssp HHHH-SEEEE--SSBS--HHHHHHHHHS-TS--EEEEETTBGGGGT-TT--S-EEE-TT-HHHHHHHHHHHHT--HHHHH
T ss_pred HHHhhhhEEecchhhccCCcceEEEEEecCCCCceEeeccCCHHHHcCC--ccEEECCCChHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999765 77777765 666633 335554 999999999999986653 11
Q ss_pred ChHHH-----hcCCHHHHHHHHHHHH
Q 010098 370 TDAQT-----HQLSWESATERFLQVA 390 (518)
Q Consensus 370 ~~~~~-----~~~sw~~~~~~~~~~y 390 (518)
....+ ..++-..-++.+++..
T Consensus 447 ~r~~~~~~~v~~~~~~~W~~~~l~~L 472 (474)
T PF00982_consen 447 ERHARLREYVREHDVQWWAESFLRDL 472 (474)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhCCHHHHHHHHHHHh
Confidence 11111 5555555555555543
No 110
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=98.74 E-value=2.4e-07 Score=94.88 Aligned_cols=264 Identities=13% Similarity=0.052 Sum_probs=160.3
Q ss_pred CcEEEEcCCchhhhhhchHHHHhhcC--CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEEEEeChhhhc-
Q 010098 118 ADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQE- 194 (518)
Q Consensus 118 ~Dvi~~~~~~~~~~~~~~~~~~~~~~--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~- 194 (518)
-|+|.+|+...+ .+ +..+.++.. ++-+..|..+|...-...... ...+ .+-+. .||.|=+.+....+
T Consensus 124 ~D~VWVHDYhL~-ll--p~~LR~~~~~~~IgFFlHiPFPs~eifr~LP~-r~ei----l~glL--~aDlIGFqt~~y~rn 193 (474)
T PRK10117 124 DDIIWIHDYHLL-PF--ASELRKRGVNNRIGFFLHIPFPTPEIFNALPP-HDEL----LEQLC--DYDLLGFQTENDRLA 193 (474)
T ss_pred CCEEEEeccHhh-HH--HHHHHHhCCCCcEEEEEeCCCCChHHHhhCCC-hHHH----HHHHH--hCccceeCCHHHHHH
Confidence 489999997655 23 344544433 677888988776442211111 1111 11111 24666666643332
Q ss_pred c--------------------CCCc---eecccccCCCCcCcchhhHH---Hhhc-CCCCcccEEEEEEeecccCCHHHH
Q 010098 195 Y--------------------PNSI---VCNVHGVNPKFLEIGEKKME---QQQN-GNKAFTKGAYYIGRMVWSKGYEEL 247 (518)
Q Consensus 195 ~--------------------~~~~---~~~~~GVd~~~~~~~~~~~~---~~~~-~~~~~~~~il~vGr~~~~Kg~~~l 247 (518)
+ ..+. ...+.|||++.|........ .... ..-.+.++|+-+.|++.-||+..=
T Consensus 194 Fl~~~~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~~~~~~~~~lr~~~~~~~lilgVDRLDytKGi~~r 273 (474)
T PRK10117 194 FLDCLSNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAGPLPPKLAQLKAELKNVQNIFSVERLDYSKGLPER 273 (474)
T ss_pred HHHHHHHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhchHHHHHHHHHHHcCCCeEEEEecccccccCHHHH
Confidence 1 0110 11113888766542111100 0010 011236789999999999999999
Q ss_pred HHHHHHHHHhcCC----cEEEEEeCCC-----C----hHHHHHHHHHcCCe--------EEEeC---CCCChHHHHhhcC
Q 010098 248 LGLLNIYHKELAG----LEMDLYGNGE-----D----FDQIQRAAKKLKLV--------VRVYP---GRDHADPIFHDYK 303 (518)
Q Consensus 248 l~a~~~l~~~~~~----~~l~ivG~g~-----~----~~~l~~~~~~~~l~--------v~~~~---~~~~~~~l~~~ad 303 (518)
++|++++.+++|+ +.|+-+.... + ..++++++.+.+-. ++++. +.++...+|+.||
T Consensus 274 l~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~AD 353 (474)
T PRK10117 274 FLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSD 353 (474)
T ss_pred HHHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhcc
Confidence 9999999998886 4565554321 1 23444444443321 44333 2333448999999
Q ss_pred eeEecCCCCCCchHHHHHHHcCC-----eEEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC----CCCh
Q 010098 304 VFLNPSTTDVVCTATAEALAMGK-----IVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA----QPTD 371 (518)
Q Consensus 304 v~v~pS~~E~~~~~~lEAma~G~-----PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~----~l~~ 371 (518)
|++.++..||.-++..|+.||-. ..|.|...| .+.+. ..++++ |.++++++|.++++-+.. ++..
T Consensus 354 v~lVTplRDGMNLVAkEyva~q~~~~~GvLILSefAGaA~~L~---~AllVNP~d~~~~A~Ai~~AL~Mp~~Er~~R~~~ 430 (474)
T PRK10117 354 VGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT---SALIVNPYDRDEVAAALDRALTMPLAERISRHAE 430 (474)
T ss_pred EEEecccccccccccchheeeecCCCCccEEEecccchHHHhC---CCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999975 377787766 66663 356664 999999999999997765 2222
Q ss_pred HHH--hcCCHHHHHHHHHHHHHhcC
Q 010098 372 AQT--HQLSWESATERFLQVAELVG 394 (518)
Q Consensus 372 ~~~--~~~sw~~~~~~~~~~y~~~~ 394 (518)
.-. ..++-..-++.+++..+...
T Consensus 431 l~~~v~~~dv~~W~~~fL~~L~~~~ 455 (474)
T PRK10117 431 MLDVIVKNDINHWQECFISDLKQIV 455 (474)
T ss_pred HHHHhhhCCHHHHHHHHHHHHHHhh
Confidence 111 66777777777877666443
No 111
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1e-06 Score=89.68 Aligned_cols=332 Identities=12% Similarity=0.031 Sum_probs=192.1
Q ss_pred cccEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCC
Q 010098 4 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGF 83 (518)
Q Consensus 4 ~~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (518)
++.||++++...-+...| .-...+.+++-+.. .||..+.... |. . +.....++-. +.
T Consensus 258 ~rlRvGylS~dlr~Havg--~l~~~v~e~hDRdk-fEvfay~~g~---------~~-----~-dal~~rI~a~----~~- 314 (620)
T COG3914 258 KRLRVGYLSSDLRSHAVG--FLLRWVFEYHDRDK-FEVFAYSLGP---------PH-----T-DALQERISAA----VE- 314 (620)
T ss_pred cceeEEEeccccccchHH--HHHHHHHHHhchhh-eEEEEEecCC---------CC-----c-hhHHHHHHHh----hh-
Confidence 447999999988777666 12223336666655 7777775521 10 0 1111111111 11
Q ss_pred CCCCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcCCEEEEEeCChhhhhhhhcch
Q 010098 84 TSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKND 163 (518)
Q Consensus 84 ~~~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~ 163 (518)
.+++.+ .- .-..+.+.|.+.+.||.+--+......- ...++.+..|+..+.-.. +. ..+..
T Consensus 315 ------~~~~~~----~~---dd~e~a~~I~~d~IdILvDl~g~T~d~r--~~v~A~RpAPiqvswlGy-~a---T~g~p 375 (620)
T COG3914 315 ------KWYPIG----RM---DDAEIANAIRTDGIDILVDLDGHTVDTR--CQVFAHRPAPIQVSWLGY-PA---TTGSP 375 (620)
T ss_pred ------heeccC----Cc---CHHHHHHHHHhcCCeEEEeccCceeccc--hhhhhcCCCceEEeeccc-cc---ccCCC
Confidence 111110 00 0223566688888999876554332111 333556655776655422 11 10100
Q ss_pred HHHHHHHHHHHHHHhhhhccEEEEeChhhhccCCCcee-cccccCC-CCcCcchhhHHHhhcCCCCcccEEEEEEeeccc
Q 010098 164 RLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPNSIVC-NVHGVNP-KFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWS 241 (518)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~-~~~GVd~-~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~ 241 (518)
. + -+- -+|..+.+ +..+++..+.+. .+...-+ +.+.+......+...+++++..+ |.+--...
T Consensus 376 ~--------~---DY~-I~D~y~vP-p~ae~yysEkl~RLp~cy~p~d~~~~v~p~~sR~~lglp~~avV--f~c~~n~~ 440 (620)
T COG3914 376 N--------M---DYF-ISDPYTVP-PTAEEYYSEKLWRLPQCYQPVDGFEPVTPPPSRAQLGLPEDAVV--FCCFNNYF 440 (620)
T ss_pred c--------c---eEE-eeCceecC-chHHHHHHHHHHhcccccCCCCCcccCCCCcchhhcCCCCCeEE--EEecCCcc
Confidence 0 0 000 14555555 344443332222 2211111 33334444455677888876644 44444677
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEeCCCC---hHHHHHHHHHcCCe---EEEeCCCCChH--HHHhhcCeeEecCCCCC
Q 010098 242 KGYEELLGLLNIYHKELAGLEMDLYGNGED---FDQIQRAAKKLKLV---VRVYPGRDHAD--PIFHDYKVFLNPSTTDV 313 (518)
Q Consensus 242 Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~---~~~l~~~~~~~~l~---v~~~~~~~~~~--~l~~~adv~v~pS~~E~ 313 (518)
|-...+++.+.++.+..|+-.|++.|+|++ ...+++++++.|+. .+|.++..+.. +-|..+|+++-+.-+-
T Consensus 441 K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTyPY~- 519 (620)
T COG3914 441 KITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYPYG- 519 (620)
T ss_pred cCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeecccCC-
Confidence 888899999999999999999999999876 37889999999987 45555443333 7788999998765443
Q ss_pred CchHHHHHHHcCCeEEeeCCCC------ccccc-cCCcEEeeCCHHHHHHHHHHHHhCCCC--CCChHHH------hcCC
Q 010098 314 VCTATAEALAMGKIVVCANHPS------NDFFK-QFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQT------HQLS 378 (518)
Q Consensus 314 ~~~~~lEAma~G~PVV~t~~g~------~e~i~-~~~~g~~~~d~~~l~~~i~~ll~~~~~--~l~~~~~------~~~s 378 (518)
-.++.+||+.||+|||+--... ..++. -|..-++.++.++.++.-..+-+|... +.+.+-+ .-|+
T Consensus 520 g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e~vA~s~~dYV~~av~~g~dral~q~~r~~l~~~r~tspL~d 599 (620)
T COG3914 520 GHTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPELVADSRADYVEKAVAFGSDRALRQQVRAELKRSRQTSPLFD 599 (620)
T ss_pred CccchHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCchhhcCCHHHHHHHHHHhcccHHHHHhhHHHHHhccccCcccC
Confidence 3788999999999999863311 22222 234445567888888888887777644 2222211 3577
Q ss_pred HHHHHHHHHHHHHhc
Q 010098 379 WESATERFLQVAELV 393 (518)
Q Consensus 379 w~~~~~~~~~~y~~~ 393 (518)
-+..++++...|...
T Consensus 600 ~~~far~le~~y~~M 614 (620)
T COG3914 600 PKAFARKLETLYWGM 614 (620)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888888744
No 112
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.57 E-value=1.2e-05 Score=79.26 Aligned_cols=344 Identities=13% Similarity=0.076 Sum_probs=184.4
Q ss_pred ccEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCC
Q 010098 5 QQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFT 84 (518)
Q Consensus 5 ~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (518)
.+||++|..+- |. ++-+.-+..++.+.++.+..|+.+. |- | +.+-...+...+ .+. .
T Consensus 3 ~~Kv~~I~GTR-PE----~iKmapli~~~~~~~~~~~~vi~TG-----QH--~-------d~em~~~~le~~---~i~-~ 59 (383)
T COG0381 3 MLKVLTIFGTR-PE----AIKMAPLVKALEKDPDFELIVIHTG-----QH--R-------DYEMLDQVLELF---GIR-K 59 (383)
T ss_pred ceEEEEEEecC-HH----HHHHhHHHHHHHhCCCCceEEEEec-----cc--c-------cHHHHHHHHHHh---CCC-C
Confidence 36999998776 43 2234445688888765677777661 11 0 001111122211 111 1
Q ss_pred CCCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcch
Q 010098 85 STFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKND 163 (518)
Q Consensus 85 ~~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~ 163 (518)
|++.+.....+..........+..+.+++.+++||+|.+|......+. ++.++...+ |+-..-- -...+..+
T Consensus 60 pdy~L~i~~~~~tl~~~t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA--~alaa~~~~IpV~HvEA-GlRt~~~~---- 132 (383)
T COG0381 60 PDYDLNIMKPGQTLGEITGNIIEGLSKVLEEEKPDLVLVHGDTNTTLA--GALAAFYLKIPVGHVEA-GLRTGDLY---- 132 (383)
T ss_pred CCcchhccccCCCHHHHHHHHHHHHHHHHHhhCCCEEEEeCCcchHHH--HHHHHHHhCCceEEEec-ccccCCCC----
Confidence 333333321222222222223556788899999999999987666444 344444444 4332221 11111111
Q ss_pred HHHHHHHHHHHHHHhhhhccEEEEeChhhhcc------CCCceecc-c-ccCCC-Cc--CcchhhHHHhh-cCCCCcccE
Q 010098 164 RLQAFLLEFVNSWLARVHCHKVIRLSAATQEY------PNSIVCNV-H-GVNPK-FL--EIGEKKMEQQQ-NGNKAFTKG 231 (518)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~------~~~~~~~~-~-GVd~~-~~--~~~~~~~~~~~-~~~~~~~~~ 231 (518)
+-.-+++.+...-+|.-++.++..++. +++.+.++ + -+|.- .. ........... ......+.+
T Consensus 133 -----~PEE~NR~l~~~~S~~hfapte~ar~nLl~EG~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~~~~~~~i 207 (383)
T COG0381 133 -----FPEEINRRLTSHLSDLHFAPTEIARKNLLREGVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLDDKDKKYI 207 (383)
T ss_pred -----CcHHHHHHHHHHhhhhhcCChHHHHHHHHHcCCCccceEEeCChHHHHHHHHHhhhccchhhHHhhhccccCcEE
Confidence 111122222222378888999777763 23222221 2 12210 00 00101111111 222222333
Q ss_pred EEEEEeecc-cCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHH-HHcCCe--EEEeCCCC--ChHHHHhhcCee
Q 010098 232 AYYIGRMVW-SKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAA-KKLKLV--VRVYPGRD--HADPIFHDYKVF 305 (518)
Q Consensus 232 il~vGr~~~-~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~-~~~~l~--v~~~~~~~--~~~~l~~~adv~ 305 (518)
++..-|-.. .+++..+++++.++..+++++.++.--. +. ..+++.. +.++.. +..+.+.+ +.-.++..|-+.
T Consensus 208 LvT~HRreN~~~~~~~i~~al~~i~~~~~~~~viyp~H-~~-~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~i 285 (383)
T COG0381 208 LVTAHRRENVGEPLEEICEALREIAEEYPDVIVIYPVH-PR-PRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFLI 285 (383)
T ss_pred EEEcchhhcccccHHHHHHHHHHHHHhCCCceEEEeCC-CC-hhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceEE
Confidence 344444333 3889999999999999887777666443 33 4444444 445544 56666554 444777777555
Q ss_pred EecCCCCCCchHHHHHHHcCCeEEeeCCCC--ccccccCCcEEeeCCHHHHHHHHHHHHhCCCC--CCChHHHhcCCHHH
Q 010098 306 LNPSTTDVVCTATAEALAMGKIVVCANHPS--NDFFKQFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQTHQLSWES 381 (518)
Q Consensus 306 v~pS~~E~~~~~~lEAma~G~PVV~t~~g~--~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~~~--~l~~~~~~~~sw~~ 381 (518)
+--| |.-.=||-..|+||++-+... +|-++.|.+-++-.|.+.+.+++..++++++. +|+... ..|.=.+
T Consensus 286 ltDS-----GgiqEEAp~lg~Pvl~lR~~TERPE~v~agt~~lvg~~~~~i~~~~~~ll~~~~~~~~m~~~~-npYgdg~ 359 (383)
T COG0381 286 LTDS-----GGIQEEAPSLGKPVLVLRDTTERPEGVEAGTNILVGTDEENILDAATELLEDEEFYERMSNAK-NPYGDGN 359 (383)
T ss_pred EecC-----CchhhhHHhcCCcEEeeccCCCCccceecCceEEeCccHHHHHHHHHHHhhChHHHHHHhccc-CCCcCcc
Confidence 5333 667889999999999998875 88777766666556899999999999998775 454322 2333344
Q ss_pred HHHHHHHHHH
Q 010098 382 ATERFLQVAE 391 (518)
Q Consensus 382 ~~~~~~~~y~ 391 (518)
+.+++.++..
T Consensus 360 as~rIv~~l~ 369 (383)
T COG0381 360 ASERIVEILL 369 (383)
T ss_pred hHHHHHHHHH
Confidence 5555555544
No 113
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.55 E-value=9.9e-07 Score=88.35 Aligned_cols=239 Identities=14% Similarity=0.031 Sum_probs=141.8
Q ss_pred hhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-C--EEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhc
Q 010098 106 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-F--VVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHC 182 (518)
Q Consensus 106 ~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~--~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 182 (518)
...+.+.+.+.+||++++-+....++- .+...++.+ + +++.+- . . .|.|+.. -.+.+.+. +
T Consensus 71 ~~~~~~~~~~~~pd~vIlID~pgFNlr--lak~lk~~~~~~~viyYI~-P--q------vWAWr~~----R~~~i~~~-~ 134 (373)
T PF02684_consen 71 FRKLVERIKEEKPDVVILIDYPGFNLR--LAKKLKKRGIPIKVIYYIS-P--Q------VWAWRPG----RAKKIKKY-V 134 (373)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCccHH--HHHHHHHhCCCceEEEEEC-C--c------eeeeCcc----HHHHHHHH-H
Confidence 344677788999999998887666544 233334434 3 444433 1 1 1111111 12223333 7
Q ss_pred cEEEEeChhhhccCCCceeccc--ccCC-CCcCcchh-hHHHhhcCCCCcccE-EEEEE-eecc-cCCHHHHHHHHHHHH
Q 010098 183 HKVIRLSAATQEYPNSIVCNVH--GVNP-KFLEIGEK-KMEQQQNGNKAFTKG-AYYIG-RMVW-SKGYEELLGLLNIYH 255 (518)
Q Consensus 183 d~vi~~S~~~~~~~~~~~~~~~--GVd~-~~~~~~~~-~~~~~~~~~~~~~~~-il~vG-r~~~-~Kg~~~ll~a~~~l~ 255 (518)
|.++|.=+...++.++...... |-.. +...+... ...+... .+++.++ .+..| |-.. .+.+..+++++.++.
T Consensus 135 D~ll~ifPFE~~~y~~~g~~~~~VGHPl~d~~~~~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~ 213 (373)
T PF02684_consen 135 DHLLVIFPFEPEFYKKHGVPVTYVGHPLLDEVKPEPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLK 213 (373)
T ss_pred hheeECCcccHHHHhccCCCeEEECCcchhhhccCCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999988887665433332 2221 21222211 2222233 4444554 44555 3332 567789999999999
Q ss_pred HhcCCcEEEEEeCCCCh-HHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeC-C
Q 010098 256 KELAGLEMDLYGNGEDF-DQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCAN-H 333 (518)
Q Consensus 256 ~~~~~~~l~ivG~g~~~-~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~-~ 333 (518)
+++|++++++....... +.+++.....+..+.+.....+..++++.||+.+..| |++.+|++.+|+|.|..- .
T Consensus 214 ~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~al~~S-----GTaTLE~Al~g~P~Vv~Yk~ 288 (373)
T PF02684_consen 214 KQRPDLQFVVPVAPEVHEELIEEILAEYPPDVSIVIIEGESYDAMAAADAALAAS-----GTATLEAALLGVPMVVAYKV 288 (373)
T ss_pred HhCCCeEEEEecCCHHHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcchhhcC-----CHHHHHHHHhCCCEEEEEcC
Confidence 99999999988764443 3356666655555454444556778999999998887 999999999999977663 3
Q ss_pred CC------ccccccCCcEEe--------e------C-CHHHHHHHHHHHHhCCC
Q 010098 334 PS------NDFFKQFPNCRT--------Y------D-GRNGFVEATLKALAEEP 366 (518)
Q Consensus 334 g~------~e~i~~~~~g~~--------~------~-d~~~l~~~i~~ll~~~~ 366 (518)
.. .-+++-.--|+. + + +++.+++++..+++|++
T Consensus 289 ~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~ 342 (373)
T PF02684_consen 289 SPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPE 342 (373)
T ss_pred cHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHH
Confidence 32 222221111111 1 1 67778888887777654
No 114
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.53 E-value=3.1e-05 Score=79.59 Aligned_cols=126 Identities=17% Similarity=0.118 Sum_probs=76.1
Q ss_pred ccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEE-EEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEe
Q 010098 229 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEM-DLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLN 307 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l-~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~ 307 (518)
..+++..|++...+. . +++.+.....+. +.++ +..|.+.+.+.++. ..-++.+.+..+ ..+++..||++|.
T Consensus 226 ~~v~vs~Gs~~~~~~-~-~~~~~~~al~~~-~~~~i~~~g~~~~~~~~~~----~~~~v~~~~~~p-~~~ll~~~~~~I~ 297 (392)
T TIGR01426 226 PVVLISLGTVFNNQP-S-FYRTCVEAFRDL-DWHVVLSVGRGVDPADLGE----LPPNVEVRQWVP-QLEILKKADAFIT 297 (392)
T ss_pred CEEEEecCccCCCCH-H-HHHHHHHHHhcC-CCeEEEEECCCCChhHhcc----CCCCeEEeCCCC-HHHHHhhCCEEEE
Confidence 345667777643332 2 333332222333 3444 44565544433322 233455544443 4589999999996
Q ss_pred cCCCCCCchHHHHHHHcCCeEEeeCCCC-----ccccccCCcEEeeC----CHHHHHHHHHHHHhCCC
Q 010098 308 PSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEP 366 (518)
Q Consensus 308 pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~~~~g~~~~----d~~~l~~~i~~ll~~~~ 366 (518)
.+- ..++.||+++|+|+|+....+ .+.+.+...|...+ ++++++++|.++++|++
T Consensus 298 hgG----~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~ 361 (392)
T TIGR01426 298 HGG----MNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPR 361 (392)
T ss_pred CCC----chHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCHH
Confidence 542 357999999999999986654 33344445555432 67899999999998764
No 115
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=98.46 E-value=6.1e-07 Score=78.99 Aligned_cols=140 Identities=19% Similarity=0.179 Sum_probs=70.2
Q ss_pred cccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCCCCcccccCcccccc
Q 010098 20 TGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTSTFDTRFYPGKFAAD 99 (518)
Q Consensus 20 ~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (518)
||.+.++..+++.|.++| |+|+|+++........... +++.+. ++.. ...+. .
T Consensus 1 GG~~~~~~~l~~~L~~~G-~~V~v~~~~~~~~~~~~~~-~~~~~~---------------~~~~------~~~~~----~ 53 (160)
T PF13579_consen 1 GGIERYVRELARALAARG-HEVTVVTPQPDPEDDEEEE-DGVRVH---------------RLPL------PRRPW----P 53 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT--EEEEEEE---GGG-SEEE-TTEEEE---------------EE--------S-SSS----G
T ss_pred CCHHHHHHHHHHHHHHCC-CEEEEEecCCCCccccccc-CCceEE---------------eccC------Cccch----h
Confidence 577888899999999998 9999999833221110000 011000 0110 00000 0
Q ss_pred cccccchhhHHhhc--CCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHH
Q 010098 100 KKSILAVGDITEII--PDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSW 176 (518)
Q Consensus 100 ~~~i~~~~~l~~~i--~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (518)
.........+..++ .+.+||+||++++. ..+. +..+.+..+ |+|.++|+...... ..+...+.+.+.++
T Consensus 54 ~~~~~~~~~~~~~l~~~~~~~Dvv~~~~~~-~~~~--~~~~~~~~~~p~v~~~h~~~~~~~-----~~~~~~~~~~~~~~ 125 (160)
T PF13579_consen 54 LRLLRFLRRLRRLLAARRERPDVVHAHSPT-AGLV--AALARRRRGIPLVVTVHGTLFRRG-----SRWKRRLYRWLERR 125 (160)
T ss_dssp GGHCCHHHHHHHHCHHCT---SEEEEEHHH-HHHH--HHHHHHHHT--EEEE-SS-T-----------HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhhccCCeEEEecccc-hhHH--HHHHHHccCCcEEEEECCCchhhc-----cchhhHHHHHHHHH
Confidence 01111245577788 88999999999954 3233 222332445 99999996432211 22333444455555
Q ss_pred HhhhhccEEEEeChhhhcc
Q 010098 177 LARVHCHKVIRLSAATQEY 195 (518)
Q Consensus 177 ~~~~~ad~vi~~S~~~~~~ 195 (518)
..+. ||.++++|+..++.
T Consensus 126 ~~~~-ad~vi~~S~~~~~~ 143 (160)
T PF13579_consen 126 LLRR-ADRVIVVSEAMRRY 143 (160)
T ss_dssp HHHH--SEEEESSHHHHHH
T ss_pred HHhc-CCEEEECCHHHHHH
Confidence 5554 89999999988874
No 116
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=98.46 E-value=1.2e-05 Score=82.38 Aligned_cols=261 Identities=12% Similarity=0.059 Sum_probs=155.9
Q ss_pred CcEEEEcCCchhhhhhchHHHHhhcC--CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEEEEeChhhhc-
Q 010098 118 ADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQE- 194 (518)
Q Consensus 118 ~Dvi~~~~~~~~~~~~~~~~~~~~~~--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~- 194 (518)
=|+|.+|+...+ ++ ...+..+.. ++.+..|..+|.-.-..-.. ..+.+..-+. .||.|=..++..++
T Consensus 148 gDiIWVhDYhL~-L~--P~mlR~~~~~~~IgfFlHiPfPssEvfr~lP-----~r~eIl~gll--~~dligFqt~~y~~n 217 (486)
T COG0380 148 GDIIWVHDYHLL-LV--PQMLRERIPDAKIGFFLHIPFPSSEVFRCLP-----WREEILEGLL--GADLIGFQTESYARN 217 (486)
T ss_pred CCEEEEEechhh-hh--HHHHHHhCCCceEEEEEeCCCCCHHHHhhCc-----hHHHHHHHhh--cCCeeEecCHHHHHH
Confidence 399999987655 23 344555544 56778888776532111111 1111111111 36777777755554
Q ss_pred c-------CC-------------Cceecc----cccCCCCcCcchhhH-----HH-hhcCCCCcccEEEEEEeecccCCH
Q 010098 195 Y-------PN-------------SIVCNV----HGVNPKFLEIGEKKM-----EQ-QQNGNKAFTKGAYYIGRMVWSKGY 244 (518)
Q Consensus 195 ~-------~~-------------~~~~~~----~GVd~~~~~~~~~~~-----~~-~~~~~~~~~~~il~vGr~~~~Kg~ 244 (518)
+ .. ...+.+ -|||+..|.-..... .. .........++|+.+-|++.-||+
T Consensus 218 F~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~~el~~~~~~~~kiivgvDRlDy~kGi 297 (486)
T COG0380 218 FLDLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKVLELKAELGRNKKLIVGVDRLDYSKGI 297 (486)
T ss_pred HHHHHHHhccccccccccccccCCceEEEEEEeeecCHHHHHHhhcCCchhhHHHHHHHHhcCCceEEEEehhcccccCc
Confidence 1 10 111111 278886654322111 11 111122337889999999999999
Q ss_pred HHHHHHHHHHHHhcCC----cEEEEEeCCCC---h------HHHHHHHHHcCC--------eEEEeC---CCCChHHHHh
Q 010098 245 EELLGLLNIYHKELAG----LEMDLYGNGED---F------DQIQRAAKKLKL--------VVRVYP---GRDHADPIFH 300 (518)
Q Consensus 245 ~~ll~a~~~l~~~~~~----~~l~ivG~g~~---~------~~l~~~~~~~~l--------~v~~~~---~~~~~~~l~~ 300 (518)
..=+.|++++..++|+ +.|+-++.... . .+++..+.+.+- .+.++. ++++...+|+
T Consensus 298 ~~rl~Afe~lL~~~Pe~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~ 377 (486)
T COG0380 298 PQRLLAFERLLEEYPEWRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYR 377 (486)
T ss_pred HHHHHHHHHHHHhChhhhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHh
Confidence 9999999999988886 45555554322 1 233333333321 144433 3445558899
Q ss_pred hcCeeEecCCCCCCchHHHHHHHcC----CeEEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC----CC
Q 010098 301 DYKVFLNPSTTDVVCTATAEALAMG----KIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA----QP 369 (518)
Q Consensus 301 ~adv~v~pS~~E~~~~~~lEAma~G----~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~----~l 369 (518)
.+|+++.++..||..++..|+.||- -+.|-|+..| ...+.+ .++++ |.++++++|.+.++-+.+ ++
T Consensus 378 ~aDv~lVtplrDGMNLvakEyVa~q~~~~G~LiLSeFaGaa~~L~~---AliVNP~d~~~va~ai~~AL~m~~eEr~~r~ 454 (486)
T COG0380 378 AADVMLVTPLRDGMNLVAKEYVAAQRDKPGVLILSEFAGAASELRD---ALIVNPWDTKEVADAIKRALTMSLEERKERH 454 (486)
T ss_pred hhceeeeccccccccHHHHHHHHhhcCCCCcEEEeccccchhhhcc---CEeECCCChHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999999999999984 4677777765 555533 56664 999999999999986654 11
Q ss_pred ChHHH--hcCCHHHHHHHHHHHHH
Q 010098 370 TDAQT--HQLSWESATERFLQVAE 391 (518)
Q Consensus 370 ~~~~~--~~~sw~~~~~~~~~~y~ 391 (518)
..--. ..++-..-++.+++...
T Consensus 455 ~~~~~~v~~~d~~~W~~~fl~~la 478 (486)
T COG0380 455 EKLLKQVLTHDVARWANSFLDDLA 478 (486)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 11111 45555666666555544
No 117
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.43 E-value=4.5e-05 Score=75.47 Aligned_cols=217 Identities=13% Similarity=0.046 Sum_probs=123.9
Q ss_pred hhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccE
Q 010098 106 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHK 184 (518)
Q Consensus 106 ~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 184 (518)
...+.+++++++||++++...... .+.+..++ |.|....+...... .+...- .||.
T Consensus 72 ~~~l~~~~~~~~pDv~is~~s~~a------~~va~~lgiP~I~f~D~e~a~~~----------------~~Lt~P-la~~ 128 (335)
T PF04007_consen 72 QYKLLKLIKKFKPDVAISFGSPEA------ARVAFGLGIPSIVFNDTEHAIAQ----------------NRLTLP-LADV 128 (335)
T ss_pred HHHHHHHHHhhCCCEEEecCcHHH------HHHHHHhCCCeEEEecCchhhcc----------------ceeehh-cCCe
Confidence 445777788899999998765444 22445555 77766654332211 111111 3799
Q ss_pred EEEeChhh----hccCCC-ceecccccCC----CCcCcchhhHHHhhcCCCCcccEEEEEEeecccCC------HHHHHH
Q 010098 185 VIRLSAAT----QEYPNS-IVCNVHGVNP----KFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKG------YEELLG 249 (518)
Q Consensus 185 vi~~S~~~----~~~~~~-~~~~~~GVd~----~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg------~~~ll~ 249 (518)
++++...- +++..+ .+...+|++. ..|.|.+. .....+.++ .++|+. |..+.+- -..+-+
T Consensus 129 i~~P~~~~~~~~~~~G~~~~i~~y~G~~E~ayl~~F~Pd~~--vl~~lg~~~-~~yIvv--R~~~~~A~y~~~~~~i~~~ 203 (335)
T PF04007_consen 129 IITPEAIPKEFLKRFGAKNQIRTYNGYKELAYLHPFKPDPE--VLKELGLDD-EPYIVV--RPEAWKASYDNGKKSILPE 203 (335)
T ss_pred eECCcccCHHHHHhcCCcCCEEEECCeeeEEeecCCCCChh--HHHHcCCCC-CCEEEE--EeccccCeeecCccchHHH
Confidence 99887433 333333 3333567764 33554432 344566554 344431 4433221 123445
Q ss_pred HHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEE
Q 010098 250 LLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVV 329 (518)
Q Consensus 250 a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV 329 (518)
.+..+.+.. +. ++++...++..+ +.++++ +.+....-+..+++..||++|--+ |+...||...|+|.|
T Consensus 204 ii~~L~~~~-~~-vV~ipr~~~~~~---~~~~~~--~~i~~~~vd~~~Ll~~a~l~Ig~g-----gTMa~EAA~LGtPaI 271 (335)
T PF04007_consen 204 IIEELEKYG-RN-VVIIPRYEDQRE---LFEKYG--VIIPPEPVDGLDLLYYADLVIGGG-----GTMAREAALLGTPAI 271 (335)
T ss_pred HHHHHHhhC-ce-EEEecCCcchhh---HHhccC--ccccCCCCCHHHHHHhcCEEEeCC-----cHHHHHHHHhCCCEE
Confidence 555555543 33 566655443322 233344 344444446668999999999433 788999999999999
Q ss_pred eeCCC---C-ccccccCCcEEee--CCHHHHHHHHHHHHhC
Q 010098 330 CANHP---S-NDFFKQFPNCRTY--DGRNGFVEATLKALAE 364 (518)
Q Consensus 330 ~t~~g---~-~e~i~~~~~g~~~--~d~~~l~~~i~~ll~~ 364 (518)
.+-.| + .+++.+ .|+++ .|++++.+.+.+....
T Consensus 272 s~~~g~~~~vd~~L~~--~Gll~~~~~~~ei~~~v~~~~~~ 310 (335)
T PF04007_consen 272 SCFPGKLLAVDKYLIE--KGLLYHSTDPDEIVEYVRKNLGK 310 (335)
T ss_pred EecCCcchhHHHHHHH--CCCeEecCCHHHHHHHHHHhhhc
Confidence 98554 2 333433 35554 6999999877765543
No 118
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.40 E-value=1.2e-06 Score=85.97 Aligned_cols=206 Identities=15% Similarity=0.055 Sum_probs=125.7
Q ss_pred hhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcCCEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEEE
Q 010098 107 GDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVI 186 (518)
Q Consensus 107 ~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi 186 (518)
+++.+.+...+||++++-+....++- -....++.+|.+-++|---|. .|.|+..- ...+.+ ++|+++
T Consensus 75 ~~~~~~i~~~kpD~~i~IDsPdFnl~--vak~lrk~~p~i~iihYV~Ps------VWAWr~~R----a~~i~~-~~D~lL 141 (381)
T COG0763 75 RELVRYILANKPDVLILIDSPDFNLR--VAKKLRKAGPKIKIIHYVSPS------VWAWRPKR----AVKIAK-YVDHLL 141 (381)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCchH--HHHHHHHhCCCCCeEEEECcc------eeeechhh----HHHHHH-HhhHee
Confidence 34666677889999988876655443 233444445666666622222 11111110 112223 489999
Q ss_pred EeChhhhccCCCceecc--ccc---CCCCcCcchhhHHHhhcCCCCcccE-EEEEEe-ec-ccCCHHHHHHHHHHHHHhc
Q 010098 187 RLSAATQEYPNSIVCNV--HGV---NPKFLEIGEKKMEQQQNGNKAFTKG-AYYIGR-MV-WSKGYEELLGLLNIYHKEL 258 (518)
Q Consensus 187 ~~S~~~~~~~~~~~~~~--~GV---d~~~~~~~~~~~~~~~~~~~~~~~~-il~vGr-~~-~~Kg~~~ll~a~~~l~~~~ 258 (518)
+.-+...++..+..... -|- |.-.+.+. +...+...+.+.+.+. .+..|+ -. -.+....+++++.+++.+.
T Consensus 142 ailPFE~~~y~k~g~~~~yVGHpl~d~i~~~~~-r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~ 220 (381)
T COG0763 142 AILPFEPAFYDKFGLPCTYVGHPLADEIPLLPD-REAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARY 220 (381)
T ss_pred eecCCCHHHHHhcCCCeEEeCChhhhhcccccc-HHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhC
Confidence 99988888655432221 132 22222222 2335666766655544 455563 22 2567889999999999999
Q ss_pred CCcEEEEEeCCCChHHHHHHH-HHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEee
Q 010098 259 AGLEMDLYGNGEDFDQIQRAA-KKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCA 331 (518)
Q Consensus 259 ~~~~l~ivG~g~~~~~l~~~~-~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t 331 (518)
|+.++++--.....+.++... +........+..-....+.+..||+.+..| |++.+|+|.+|+|+|.+
T Consensus 221 ~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~al~aS-----GT~tLE~aL~g~P~Vv~ 289 (381)
T COG0763 221 PDLKFVLPLVNAKYRRIIEEALKWEVAGLSLILIDGEKRKAFAAADAALAAS-----GTATLEAALAGTPMVVA 289 (381)
T ss_pred CCceEEEecCcHHHHHHHHHHhhccccCceEEecCchHHHHHHHhhHHHHhc-----cHHHHHHHHhCCCEEEE
Confidence 999999987755544444333 333322233333345668999999988877 99999999999998877
No 119
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.40 E-value=7.1e-06 Score=90.98 Aligned_cols=260 Identities=11% Similarity=0.011 Sum_probs=156.3
Q ss_pred cEEEEcCCchhhhhhchHHHHhhcC--CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEEEEeChhhhc-c
Q 010098 119 DIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQE-Y 195 (518)
Q Consensus 119 Dvi~~~~~~~~~~~~~~~~~~~~~~--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~-~ 195 (518)
|+|.+|+...+ .+ ...+.++.. ++-+..|..+|...-..... +...+++ -+. .||.|=+.+....+ +
T Consensus 203 d~VWVhDYhL~-ll--P~~LR~~~~~~~IgfFlHiPFPs~eifr~LP-~r~eiL~----glL--~aDlIGFht~~yar~F 272 (854)
T PLN02205 203 DFVWIHDYHLM-VL--PTFLRKRFNRVKLGFFLHSPFPSSEIYKTLP-IREELLR----ALL--NSDLIGFHTFDYARHF 272 (854)
T ss_pred CEEEEeCchhh-HH--HHHHHhhCCCCcEEEEecCCCCChHHHhhCC-cHHHHHH----HHh--cCCeEEecCHHHHHHH
Confidence 89999997655 23 344555544 67778898887654322111 1111111 111 36777777744433 1
Q ss_pred ------------CC-----------Cce---ecccccCCCCcCcchh-----h---HHHhhcCCCCcccEEEEEEeeccc
Q 010098 196 ------------PN-----------SIV---CNVHGVNPKFLEIGEK-----K---MEQQQNGNKAFTKGAYYIGRMVWS 241 (518)
Q Consensus 196 ------------~~-----------~~~---~~~~GVd~~~~~~~~~-----~---~~~~~~~~~~~~~~il~vGr~~~~ 241 (518)
.. +.+ ..+.|||+..|..... . ..+...+ ....++|+-+.|++.-
T Consensus 273 l~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~ilgVDrlD~~ 351 (854)
T PLN02205 273 LSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEAKVKELIKQFC-DQDRIMLLGVDDMDIF 351 (854)
T ss_pred HHHHHHHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcChhHHHHHHHHHHHhc-cCCCEEEEEccCcccc
Confidence 00 000 1112778765532111 0 1111121 1236899999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCc----EEEEEeC-----CCCh----HHHHHHHHHcCC--------eEEEeC---CCCChHH
Q 010098 242 KGYEELLGLLNIYHKELAGL----EMDLYGN-----GEDF----DQIQRAAKKLKL--------VVRVYP---GRDHADP 297 (518)
Q Consensus 242 Kg~~~ll~a~~~l~~~~~~~----~l~ivG~-----g~~~----~~l~~~~~~~~l--------~v~~~~---~~~~~~~ 297 (518)
||+..=+.|++++.+++|++ .|+-+.. +++. .++++++.+.+- .+.++. +..+.-.
T Consensus 352 KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~a 431 (854)
T PLN02205 352 KGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVA 431 (854)
T ss_pred cCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHH
Confidence 99999999999999999874 5554443 2222 334444444321 144443 2334448
Q ss_pred HHhhcCeeEecCCCCCCchHHHHHHHcCC-------------------eEEeeCCCC-ccccccCCcEEeeC--CHHHHH
Q 010098 298 IFHDYKVFLNPSTTDVVCTATAEALAMGK-------------------IVVCANHPS-NDFFKQFPNCRTYD--GRNGFV 355 (518)
Q Consensus 298 l~~~adv~v~pS~~E~~~~~~lEAma~G~-------------------PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~ 355 (518)
+|+.||+++.++..||.-++..|+.+|.. ..|.|...| ...+ ...+.++ |.++++
T Consensus 432 ly~~ADv~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L---~~Ai~VNP~d~~~~a 508 (854)
T PLN02205 432 YYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPSL---SGAIRVNPWNIDAVA 508 (854)
T ss_pred HHHhccEEEeccccccccccchheeEEccCccccccccccccccCCCCceEeeeccchhHHh---CcCeEECCCCHHHHH
Confidence 89999999999999999999999999864 266666654 4444 2355554 999999
Q ss_pred HHHHHHHhCCCC----CCChHHH--hcCCHHHHHHHHHHHHHh
Q 010098 356 EATLKALAEEPA----QPTDAQT--HQLSWESATERFLQVAEL 392 (518)
Q Consensus 356 ~~i~~ll~~~~~----~l~~~~~--~~~sw~~~~~~~~~~y~~ 392 (518)
++|.++++-+.. ++.+..+ ..++-..-++.+++..+.
T Consensus 509 ~ai~~AL~m~~~Er~~R~~~~~~~v~~~d~~~W~~~fl~~l~~ 551 (854)
T PLN02205 509 DAMDSALEMAEPEKQLRHEKHYRYVSTHDVGYWARSFLQDLER 551 (854)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 999999997765 2222222 555666666666655543
No 120
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.39 E-value=2.7e-06 Score=73.49 Aligned_cols=137 Identities=21% Similarity=0.189 Sum_probs=77.1
Q ss_pred EEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCCC
Q 010098 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 86 (518)
Q Consensus 7 rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (518)
||+++++.+. .....++++|.+.| |+|+++++.... .....++++.+.. ...
T Consensus 1 KIl~i~~~~~-------~~~~~~~~~L~~~g-~~V~ii~~~~~~--~~~~~~~~i~~~~---------------~~~--- 52 (139)
T PF13477_consen 1 KILLIGNTPS-------TFIYNLAKELKKRG-YDVHIITPRNDY--EKYEIIEGIKVIR---------------LPS--- 52 (139)
T ss_pred CEEEEecCcH-------HHHHHHHHHHHHCC-CEEEEEEcCCCc--hhhhHhCCeEEEE---------------ecC---
Confidence 6889988762 25678899999998 999999982210 0000001111000 000
Q ss_pred CcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC--CEEEEEeCChhhhhhhhcchH
Q 010098 87 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLEYVKREKNDR 164 (518)
Q Consensus 87 ~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~--~~v~~~h~~~~~~~~~~~~~~ 164 (518)
+.+. ....+ ....+.+.+++.+||+||+|.+...+.+ +..+++..+ |+|.+.|+... +... ..
T Consensus 53 ------~~k~--~~~~~-~~~~l~k~ik~~~~DvIh~h~~~~~~~~--~~l~~~~~~~~~~i~~~hg~~~-~~~~-~~-- 117 (139)
T PF13477_consen 53 ------PRKS--PLNYI-KYFRLRKIIKKEKPDVIHCHTPSPYGLF--AMLAKKLLKNKKVIYTVHGSDF-YNSS-KK-- 117 (139)
T ss_pred ------CCCc--cHHHH-HHHHHHHHhccCCCCEEEEecCChHHHH--HHHHHHHcCCCCEEEEecCCee-ecCC-ch--
Confidence 0000 01111 1336888999999999999998775455 333434443 79999995422 1111 11
Q ss_pred HHHHHHHHHHHHHhhhhccEEEEeC
Q 010098 165 LQAFLLEFVNSWLARVHCHKVIRLS 189 (518)
Q Consensus 165 ~~~~~~~~~~~~~~~~~ad~vi~~S 189 (518)
..+.+.+.+++.+. +|.+++.|
T Consensus 118 --~~~~~~~~~~~~k~-~~~ii~~~ 139 (139)
T PF13477_consen 118 --KKLKKFIIKFAFKR-ADKIIVQS 139 (139)
T ss_pred --HHHHHHHHHHHHHh-CCEEEEcC
Confidence 11344455555553 79999876
No 121
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.31 E-value=0.00016 Score=72.04 Aligned_cols=118 Identities=15% Similarity=0.130 Sum_probs=71.2
Q ss_pred cEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCC-CChHHHHhhcCeeEec
Q 010098 230 KGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGR-DHADPIFHDYKVFLNP 308 (518)
Q Consensus 230 ~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~-~~~~~l~~~adv~v~p 308 (518)
.+++|.|. .+...+++++. +.+++.+++ |..+... +.+.-++.+.+.. ++..++|..||++|.-
T Consensus 190 ~iLv~~g~----~~~~~l~~~l~----~~~~~~~i~-~~~~~~~------~~~~~~v~~~~~~~~~~~~~l~~ad~vI~~ 254 (321)
T TIGR00661 190 YILVYIGF----EYRYKILELLG----KIANVKFVC-YSYEVAK------NSYNENVEIRRITTDNFKELIKNAELVITH 254 (321)
T ss_pred cEEEECCc----CCHHHHHHHHH----hCCCeEEEE-eCCCCCc------cccCCCEEEEECChHHHHHHHHhCCEEEEC
Confidence 34555443 35566677763 344555444 4322111 1222345555544 4788999999999976
Q ss_pred CCCCCCchHHHHHHHcCCeEEeeCCCC-cc------ccccCCcEEeeC--CHHHHHHHHHHHHhCCCC
Q 010098 309 STTDVVCTATAEALAMGKIVVCANHPS-ND------FFKQFPNCRTYD--GRNGFVEATLKALAEEPA 367 (518)
Q Consensus 309 S~~E~~~~~~lEAma~G~PVV~t~~g~-~e------~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~ 367 (518)
+- ..++.||+++|+|+|....++ .| .+.+...|...+ +. ++.+++.+.++++..
T Consensus 255 ~G----~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~-~~~~~~~~~~~~~~~ 317 (321)
T TIGR00661 255 GG----FSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKEL-RLLEAILDIRNMKRY 317 (321)
T ss_pred CC----hHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhH-HHHHHHHhccccccc
Confidence 52 346999999999999998754 23 355555565553 44 666666666666543
No 122
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.30 E-value=6.3e-06 Score=84.26 Aligned_cols=169 Identities=13% Similarity=0.011 Sum_probs=105.5
Q ss_pred HhhcCCCCcccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-hHHHHHHHHHcCCe---EEEeCCCCCh
Q 010098 220 QQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLV---VRVYPGRDHA 295 (518)
Q Consensus 220 ~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l~---v~~~~~~~~~ 295 (518)
+..++++++..+ |.+--...|=-+..++++.++.++.|+.+|++...... .+.+++.+.+.|+. +.|.+ ....
T Consensus 276 R~~~gLp~d~vv--F~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~-~~~~ 352 (468)
T PF13844_consen 276 RAQYGLPEDAVV--FGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSP-VAPR 352 (468)
T ss_dssp TGGGT--SSSEE--EEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE----H
T ss_pred HHHcCCCCCceE--EEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcC-CCCH
Confidence 345677766543 44444567888999999999999999999988876443 57788888899987 44444 3233
Q ss_pred H---HHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC------ccccc-cCCcEEeeCCHHHHHHHHHHHHhCC
Q 010098 296 D---PIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS------NDFFK-QFPNCRTYDGRNGFVEATLKALAEE 365 (518)
Q Consensus 296 ~---~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~------~e~i~-~~~~g~~~~d~~~l~~~i~~ll~~~ 365 (518)
+ ..++.+|+++-|-.+- -+++.+||++||+|||+-.... ..++. -|-.-++..|.+++++.-.++.+|+
T Consensus 353 ~ehl~~~~~~DI~LDT~p~n-G~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~s~~eYv~~Av~La~D~ 431 (468)
T PF13844_consen 353 EEHLRRYQLADICLDTFPYN-GGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIADSEEEYVEIAVRLATDP 431 (468)
T ss_dssp HHHHHHGGG-SEEE--SSS---SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-SSHHHHHHHHHHHHH-H
T ss_pred HHHHHHhhhCCEEeeCCCCC-CcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCCCHHHHHHHHHHHhCCH
Confidence 3 5667899999875443 4899999999999999986532 22222 1334456679999999999999998
Q ss_pred CC--CCChHHH------hcCCHHHHHHHHHHHHHh
Q 010098 366 PA--QPTDAQT------HQLSWESATERFLQVAEL 392 (518)
Q Consensus 366 ~~--~l~~~~~------~~~sw~~~~~~~~~~y~~ 392 (518)
+. .+++.-+ .-|+-...++.++++|+.
T Consensus 432 ~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~ 466 (468)
T PF13844_consen 432 ERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQ 466 (468)
T ss_dssp HHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHH
Confidence 85 4444333 447777888888888874
No 123
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.20 E-value=9.3e-06 Score=81.48 Aligned_cols=240 Identities=13% Similarity=0.094 Sum_probs=132.4
Q ss_pred hhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccE
Q 010098 106 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHK 184 (518)
Q Consensus 106 ~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 184 (518)
...+.+.+.+.+||+|+++......+. ++..+...+ | |..+|.-...+....+. .-...+..+.+. ||.
T Consensus 56 ~~~~~~~~~~~~Pd~Vlv~GD~~~~la--~alaA~~~~ip-v~HieaGlRs~d~~~g~------~de~~R~~i~~l-a~l 125 (346)
T PF02350_consen 56 IIELADVLEREKPDAVLVLGDRNEALA--AALAAFYLNIP-VAHIEAGLRSGDRTEGM------PDEINRHAIDKL-AHL 125 (346)
T ss_dssp HHHHHHHHHHHT-SEEEEETTSHHHHH--HHHHHHHTT-E-EEEES-----S-TTSST------THHHHHHHHHHH--SE
T ss_pred HHHHHHHHHhcCCCEEEEEcCCchHHH--HHHHHHHhCCC-EEEecCCCCccccCCCC------chhhhhhhhhhh-hhh
Confidence 455777888899999999987665333 344455555 5 44444332222222111 122234444555 899
Q ss_pred EEEeChhhhcc------CCCceecc--cccCCCCcCc-chhhHH-Hhhc-CCCCcccEEEEEE-eecc---cCCHHHHHH
Q 010098 185 VIRLSAATQEY------PNSIVCNV--HGVNPKFLEI-GEKKME-QQQN-GNKAFTKGAYYIG-RMVW---SKGYEELLG 249 (518)
Q Consensus 185 vi~~S~~~~~~------~~~~~~~~--~GVd~~~~~~-~~~~~~-~~~~-~~~~~~~~il~vG-r~~~---~Kg~~~ll~ 249 (518)
.++.++..++. +.+.+..+ .++|.-.... ...... .... .... .++++... +... ......+.+
T Consensus 126 hf~~t~~~~~~L~~~G~~~~rI~~vG~~~~D~l~~~~~~~~~~~~~~~i~~~~~-~~~iLvt~H~~t~~~~~~~~~~i~~ 204 (346)
T PF02350_consen 126 HFAPTEEARERLLQEGEPPERIFVVGNPGIDALLQNKEEIEEKYKNSGILQDAP-KPYILVTLHPVTNEDNPERLEQILE 204 (346)
T ss_dssp EEESSHHHHHHHHHTT--GGGEEE---HHHHHHHHHHHTTCC-HHHHHHHHCTT-SEEEEEE-S-CCCCTHH--HHHHHH
T ss_pred hccCCHHHHHHHHhcCCCCCeEEEEChHHHHHHHHhHHHHhhhhhhHHHHhccC-CCEEEEEeCcchhcCChHHHHHHHH
Confidence 99999777662 22222222 1344321110 000000 0011 0122 44444433 3222 345678888
Q ss_pred HHHHHHHhcCCcEEEEEeCCCC--hHHHHHHHHHcCCeEEEeCC--CCChHHHHhhcCeeEecCCCCCCchHHH-HHHHc
Q 010098 250 LLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLVVRVYPG--RDHADPIFHDYKVFLNPSTTDVVCTATA-EALAM 324 (518)
Q Consensus 250 a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~~~l~v~~~~~--~~~~~~l~~~adv~v~pS~~E~~~~~~l-EAma~ 324 (518)
++..+.+. +++.+++.....+ ...+.+..+++. +++++.+ +.+.-.+++.|++.|--| | .+. ||.++
T Consensus 205 ~l~~L~~~-~~~~vi~~~hn~p~~~~~i~~~l~~~~-~v~~~~~l~~~~~l~ll~~a~~vvgdS-----s-GI~eEa~~l 276 (346)
T PF02350_consen 205 ALKALAER-QNVPVIFPLHNNPRGSDIIIEKLKKYD-NVRLIEPLGYEEYLSLLKNADLVVGDS-----S-GIQEEAPSL 276 (346)
T ss_dssp HHHHHHHH-TTEEEEEE--S-HHHHHHHHHHHTT-T-TEEEE----HHHHHHHHHHESEEEESS-----H-HHHHHGGGG
T ss_pred HHHHHHhc-CCCcEEEEecCCchHHHHHHHHhcccC-CEEEECCCCHHHHHHHHhcceEEEEcC-----c-cHHHHHHHh
Confidence 88888777 6888888876333 456666666663 6777664 445558999999998554 5 566 99999
Q ss_pred CCeEEeeCCCC--ccccccCCcEEeeCCHHHHHHHHHHHHhC
Q 010098 325 GKIVVCANHPS--NDFFKQFPNCRTYDGRNGFVEATLKALAE 364 (518)
Q Consensus 325 G~PVV~t~~g~--~e~i~~~~~g~~~~d~~~l~~~i~~ll~~ 364 (518)
|+|+|.-+..+ ++-...+.+-++-.|++++.+++.+++++
T Consensus 277 g~P~v~iR~~geRqe~r~~~~nvlv~~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 277 GKPVVNIRDSGERQEGRERGSNVLVGTDPEAIIQAIEKALSD 318 (346)
T ss_dssp T--EEECSSS-S-HHHHHTTSEEEETSSHHHHHHHHHHHHH-
T ss_pred CCeEEEecCCCCCHHHHhhcceEEeCCCHHHHHHHHHHHHhC
Confidence 99999996654 78888888877445999999999999976
No 124
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.20 E-value=0.00039 Score=73.46 Aligned_cols=122 Identities=16% Similarity=0.078 Sum_probs=75.6
Q ss_pred ccEEEEEEeeccc-CC----HHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHh--h
Q 010098 229 TKGAYYIGRMVWS-KG----YEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--D 301 (518)
Q Consensus 229 ~~~il~vGr~~~~-Kg----~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~ 301 (518)
..+++..|..... +. +..+++++ .+.+ .++++..+++..+ ..+.-++.+. +.-...++++ .
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~----~~l~-~~viw~~~~~~~~------~~~p~Nv~i~-~w~Pq~~lL~hp~ 364 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTF----KKLP-YNVLWKYDGEVEA------INLPANVLTQ-KWFPQRAVLKHKN 364 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHH----HhCC-CeEEEEECCCcCc------ccCCCceEEe-cCCCHHHHhcCCC
Confidence 3566777876532 22 34455555 3444 4666655433221 1122233333 3345567884 5
Q ss_pred cCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----ccccccCCcEEeeC----CHHHHHHHHHHHHhCCC
Q 010098 302 YKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEP 366 (518)
Q Consensus 302 adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~~~~g~~~~----d~~~l~~~i~~ll~~~~ 366 (518)
+++|| +-|-..++.||+.+|+|+|+-...+ ...+...+.|...+ +.+++.++|.++++|+.
T Consensus 365 v~~fI----tHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~~ 434 (507)
T PHA03392 365 VKAFV----TQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIENPK 434 (507)
T ss_pred CCEEE----ecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCCHH
Confidence 88888 3345678999999999999997754 34444555565542 78999999999998754
No 125
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.17 E-value=9.3e-05 Score=69.24 Aligned_cols=88 Identities=14% Similarity=0.232 Sum_probs=62.3
Q ss_pred ccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEE-EeCC-CChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeE
Q 010098 229 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDL-YGNG-EDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFL 306 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i-vG~g-~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v 306 (518)
..+++..|.-++ || +.++.+..+.+. ++.+.+ +|++ +....+++.++++. +++++-..+++.++|.+||+.|
T Consensus 159 r~ilI~lGGsDp-k~--lt~kvl~~L~~~--~~nl~iV~gs~~p~l~~l~k~~~~~~-~i~~~~~~~dma~LMke~d~aI 232 (318)
T COG3980 159 RDILITLGGSDP-KN--LTLKVLAELEQK--NVNLHIVVGSSNPTLKNLRKRAEKYP-NINLYIDTNDMAELMKEADLAI 232 (318)
T ss_pred heEEEEccCCCh-hh--hHHHHHHHhhcc--CeeEEEEecCCCcchhHHHHHHhhCC-CeeeEecchhHHHHHHhcchhe
Confidence 346667776443 33 445666666554 355544 3543 34677888877665 4777788899999999999888
Q ss_pred ecCCCCCCchHHHHHHHcCCe
Q 010098 307 NPSTTDVVCTATAEALAMGKI 327 (518)
Q Consensus 307 ~pS~~E~~~~~~lEAma~G~P 327 (518)
... |.++.||+..|+|
T Consensus 233 ~Aa-----GstlyEa~~lgvP 248 (318)
T COG3980 233 SAA-----GSTLYEALLLGVP 248 (318)
T ss_pred ecc-----chHHHHHHHhcCC
Confidence 654 8899999999999
No 126
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.08 E-value=4.9e-05 Score=79.70 Aligned_cols=201 Identities=8% Similarity=-0.034 Sum_probs=117.6
Q ss_pred hhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC---CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhc
Q 010098 106 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR---FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHC 182 (518)
Q Consensus 106 ~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~---~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 182 (518)
...+.+.+.+++||++++-+....++- .+...++.+ |+++.+--.. +.|+.. -.+.+.+. +
T Consensus 299 ~~~l~~~i~~~kPD~vIlID~PgFNlr--LAK~lkk~Gi~ipviyYVsPqV---------WAWR~~----Rikki~k~-v 362 (608)
T PRK01021 299 YRKLYKTILKTNPRTVICIDFPDFHFL--LIKKLRKRGYKGKIVHYVCPSI---------WAWRPK----RKTILEKY-L 362 (608)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCHH--HHHHHHhcCCCCCEEEEECccc---------eeeCcc----hHHHHHHH-h
Confidence 344677788899999998776666553 233444445 5555443111 111111 12223333 7
Q ss_pred cEEEEeChhhhccCCCceeccc--ccCC-CCcCc-chhhHHHhhcCCCCcccE-EEEEE-eecc-cCCHHHHHHHHH--H
Q 010098 183 HKVIRLSAATQEYPNSIVCNVH--GVNP-KFLEI-GEKKMEQQQNGNKAFTKG-AYYIG-RMVW-SKGYEELLGLLN--I 253 (518)
Q Consensus 183 d~vi~~S~~~~~~~~~~~~~~~--GVd~-~~~~~-~~~~~~~~~~~~~~~~~~-il~vG-r~~~-~Kg~~~ll~a~~--~ 253 (518)
|.++|.=+...++.++...++. |-.. +.... ......++..+.+++.++ .+..| |-.+ .+.+..+++++. +
T Consensus 363 D~ll~IfPFE~~~y~~~gv~v~yVGHPL~d~i~~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~ 442 (608)
T PRK01021 363 DLLLLILPFEQNLFKDSPLRTVYLGHPLVETISSFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASS 442 (608)
T ss_pred hhheecCccCHHHHHhcCCCeEEECCcHHhhcccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999988887654433322 2211 11111 122233455666544444 45556 3322 556788888887 4
Q ss_pred HHHhcCCcEEEEEeCCCC-hHHHHHHHHHcC-CeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEee
Q 010098 254 YHKELAGLEMDLYGNGED-FDQIQRAAKKLK-LVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCA 331 (518)
Q Consensus 254 l~~~~~~~~l~ivG~g~~-~~~l~~~~~~~~-l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t 331 (518)
+.+ +.++++....+. .+.+++..+..+ +.+.+..+. +..++++.||+.+..| |++.+|++.+|+|.|..
T Consensus 443 l~~---~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ii~~~-~~~~~m~aaD~aLaaS-----GTaTLEaAL~g~PmVV~ 513 (608)
T PRK01021 443 LAS---THQLLVSSANPKYDHLILEVLQQEGCLHSHIVPSQ-FRYELMRECDCALAKC-----GTIVLETALNQTPTIVT 513 (608)
T ss_pred hcc---CeEEEEecCchhhHHHHHHHHhhcCCCCeEEecCc-chHHHHHhcCeeeecC-----CHHHHHHHHhCCCEEEE
Confidence 432 577766543222 466677665544 244544332 2469999999999888 99999999999997775
No 127
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=98.01 E-value=6.1e-05 Score=67.60 Aligned_cols=157 Identities=20% Similarity=0.180 Sum_probs=89.7
Q ss_pred cEEEEEeeccCCc-ccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCC
Q 010098 6 QHIAIFTTASLPW-LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFT 84 (518)
Q Consensus 6 ~rI~ivt~~~~P~-~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (518)
+||+|+.+--.|. .+|.++...+++..|.++| ++|+|.|...........| +++ +....
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g-~~v~Vyc~~~~~~~~~~~y-~gv------------------~l~~i 61 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKG-IDVTVYCRSDYYPYKEFEY-NGV------------------RLVYI 61 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCC-ceEEEEEccCCCCCCCccc-CCe------------------EEEEe
Confidence 4899999987775 6888888888999999998 9999998732111110001 110 11110
Q ss_pred CCCcccccCccccccccccc-chhhHHhhc---CC--CCCcEEEEcCCchhhhhhchHHHHhhcC----CEEEEEeCChh
Q 010098 85 STFDTRFYPGKFAADKKSIL-AVGDITEII---PD--EEADIAVLEEPEHLTWFHHGKRWKAKFR----FVVGIVHTNYL 154 (518)
Q Consensus 85 ~~~~i~~~~~~~~~~~~~i~-~~~~l~~~i---~~--~~~Dvi~~~~~~~~~~~~~~~~~~~~~~----~~v~~~h~~~~ 154 (518)
+.... .....+. .+..+...+ ++ .+.|+++++.....+++ ..+.+++. +++...| ..
T Consensus 62 ~~~~~--------g~~~si~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~---~~~~r~~~~~g~~v~vN~D--Gl 128 (185)
T PF09314_consen 62 PAPKN--------GSAESIIYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFF---LPFLRKLRKKGGKVVVNMD--GL 128 (185)
T ss_pred CCCCC--------CchHHHHHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHH---HHHHHhhhhcCCcEEECCC--cc
Confidence 00000 0011111 122233332 32 36889998877633233 22444332 4555544 44
Q ss_pred hhhhhhcchHHHHHHHHHHHHHHhhhhccEEEEeChhhhccCC
Q 010098 155 EYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPN 197 (518)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~ 197 (518)
++.+ .+.+...+.+++...++..+. ||.+|+.|+.++++.+
T Consensus 129 EWkR-~KW~~~~k~~lk~~E~~avk~-ad~lIaDs~~I~~y~~ 169 (185)
T PF09314_consen 129 EWKR-AKWGRPAKKYLKFSEKLAVKY-ADRLIADSKGIQDYIK 169 (185)
T ss_pred hhhh-hhcCHHHHHHHHHHHHHHHHh-CCEEEEcCHHHHHHHH
Confidence 4443 356666677777777777776 9999999999998644
No 128
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.85 E-value=0.00018 Score=73.87 Aligned_cols=121 Identities=14% Similarity=0.080 Sum_probs=78.9
Q ss_pred EEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEE-eCCCCChHHHHhhcCeeEecC
Q 010098 231 GAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRV-YPGRDHADPIFHDYKVFLNPS 309 (518)
Q Consensus 231 ~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~-~~~~~~~~~l~~~adv~v~pS 309 (518)
+.+..|..... ..+++.+....... +.++++...+ .+.... ++..++ .-++....+++..||++|...
T Consensus 240 vyvslGt~~~~---~~l~~~~~~a~~~l-~~~vi~~~~~-~~~~~~------~~p~n~~v~~~~p~~~~l~~ad~vI~hG 308 (406)
T COG1819 240 VYVSLGTVGNA---VELLAIVLEALADL-DVRVIVSLGG-ARDTLV------NVPDNVIVADYVPQLELLPRADAVIHHG 308 (406)
T ss_pred EEEEcCCcccH---HHHHHHHHHHHhcC-CcEEEEeccc-cccccc------cCCCceEEecCCCHHHHhhhcCEEEecC
Confidence 33455555433 45555544444443 5777776654 221222 222222 235566678999999999654
Q ss_pred CCCCCchHHHHHHHcCCeEEeeCCCC-----ccccccCCcEEee----CCHHHHHHHHHHHHhCCC
Q 010098 310 TTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTY----DGRNGFVEATLKALAEEP 366 (518)
Q Consensus 310 ~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~~~~g~~~----~d~~~l~~~i~~ll~~~~ 366 (518)
--.++.||+.+|+|+|.-..+. .+-+++-..|... -+++.++++|.++++|+.
T Consensus 309 ----G~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~ 370 (406)
T COG1819 309 ----GAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDS 370 (406)
T ss_pred ----CcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHH
Confidence 3567999999999999987664 5566666777653 289999999999998765
No 129
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=97.61 E-value=0.0001 Score=70.32 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=33.7
Q ss_pred EEEEEeeccCC--cccccccchHHHHHHHHhcCCeeEEEEeccCCc
Q 010098 7 HIAIFTTASLP--WLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSL 50 (518)
Q Consensus 7 rI~ivt~~~~P--~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~ 50 (518)
||++||.-+.| ..+|-+.....++++|++.| |+|+|++|.+..
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G-~~V~Vi~P~y~~ 45 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQG-HDVRVIMPKYGF 45 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT--EEEEEEE-THH
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcC-CeEEEEEccchh
Confidence 79999999999 56888888888999999999 999999997743
No 130
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.56 E-value=0.0029 Score=62.16 Aligned_cols=102 Identities=15% Similarity=0.168 Sum_probs=80.1
Q ss_pred CCCChHHHHhhcCeeEecCC---CCC---CchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeCCHHHHHHHHHHHHh
Q 010098 291 GRDHADPIFHDYKVFLNPST---TDV---VCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYDGRNGFVEATLKALA 363 (518)
Q Consensus 291 ~~~~~~~l~~~adv~v~pS~---~E~---~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~d~~~l~~~i~~ll~ 363 (518)
+...+...++..|++++-++ .++ +.+-+.|+|+||.|.++....+ ..++.+|..-.++.|.+++.+.+..++.
T Consensus 247 ~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~~~~~~e~~f~pgk~~iv~~d~kdl~~~~~yll~ 326 (373)
T COG4641 247 PKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITDYWKDLEKFFKPGKDIIVYQDSKDLKEKLKYLLN 326 (373)
T ss_pred ccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCccccccHHHHHHhcCCchheEEecCHHHHHHHHHHHhc
Confidence 44666778888888877543 233 3788999999999999888877 8888888888888999999999999999
Q ss_pred CCCC--CCChHHH----hcCCHHHHHHHHHHHHHh
Q 010098 364 EEPA--QPTDAQT----HQLSWESATERFLQVAEL 392 (518)
Q Consensus 364 ~~~~--~l~~~~~----~~~sw~~~~~~~~~~y~~ 392 (518)
.+++ ++++.+. ..++.+.-...+++....
T Consensus 327 h~~erkeiae~~ye~V~~~ht~~~r~~~~~~~i~s 361 (373)
T COG4641 327 HPDERKEIAECAYERVLARHTYEERIFKLLNEIAS 361 (373)
T ss_pred CcchHHHHHHhhHHHHHHhccHHHHHHHHHHHHHH
Confidence 8875 6666555 557777777777766663
No 131
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=97.53 E-value=0.0096 Score=57.29 Aligned_cols=267 Identities=13% Similarity=0.034 Sum_probs=146.4
Q ss_pred hhcCCCCCcEEEEcCCchhhhhhchHHHHhhcCCEEEEEeCChhh-hhhhhcchHHHHHHHHHHHHHHhhhhccEEEEeC
Q 010098 111 EIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLE-YVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLS 189 (518)
Q Consensus 111 ~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S 189 (518)
...+..+.+-+++|.-+...++ .+.+..+..+.-+..|....+ | +....++.++...+.+...+. ..+|++..
T Consensus 33 ~~a~~~r~~rff~HGqFn~~lw--lall~g~~~~~q~yWhiWGaDLY---e~~~~lk~rlfy~lRR~aq~r-vg~v~atr 106 (322)
T PRK02797 33 AKAKANRAQRFFLHGQFNPTLW--LALLSGKIKPKQFYWHIWGADLY---EESKGLKFRLFYPLRRLAQKR-VGHVFATR 106 (322)
T ss_pred HHHhhCccceEEEecCCCHHHH--HHHHhCCcCccceEEEEEChhhh---hcccchhHHHHHHHHHHHHhh-cCeEEEec
Confidence 3334456777788876554333 233444544444444533222 3 223455556666665555443 57888843
Q ss_pred hhhhccCCCceecccccCCCCcCcchhhHHHh-hcCCCCcccEEEEEEee-cccCCHHHHHHHHHHHHHhcCCcEEEEE-
Q 010098 190 AATQEYPNSIVCNVHGVNPKFLEIGEKKMEQQ-QNGNKAFTKGAYYIGRM-VWSKGYEELLGLLNIYHKELAGLEMDLY- 266 (518)
Q Consensus 190 ~~~~~~~~~~~~~~~GVd~~~~~~~~~~~~~~-~~~~~~~~~~il~vGr~-~~~Kg~~~ll~a~~~l~~~~~~~~l~iv- 266 (518)
..-.+..+....+.|- .-+|+......... .....+..++.+-+|+- ++..+..++++++.+... .++++++.
T Consensus 107 -GD~~~~a~~~~~v~~~-llyfpt~m~~~l~~~~~~~~~~~~~tIlvGNSgd~SN~Hie~L~~l~~~~~--~~v~ii~Pl 182 (322)
T PRK02797 107 -GDLSYFAQRHPKVPGS-LLYFPTRMDPSLNTMANDRQRAGKMTILVGNSGDRSNRHIEALRALHQQFG--DNVKIIVPM 182 (322)
T ss_pred -chHHHHHHhcCCCCcc-EEecCCcchhhhccccccccCCCceEEEEeCCCCCcccHHHHHHHHHHHhC--CCeEEEEEC
Confidence 2222211111111111 01111111111000 00011223455567764 456677788888866543 37888774
Q ss_pred eC--CCC--hHHHHHHHHHcCC--eEEEeC---CCCChHHHHhhcCeeEecC-CCCCCchHHHHHHHcCCeEEeeCC-CC
Q 010098 267 GN--GED--FDQIQRAAKKLKL--VVRVYP---GRDHADPIFHDYKVFLNPS-TTDVVCTATAEALAMGKIVVCANH-PS 335 (518)
Q Consensus 267 G~--g~~--~~~l~~~~~~~~l--~v~~~~---~~~~~~~l~~~adv~v~pS-~~E~~~~~~lEAma~G~PVV~t~~-g~ 335 (518)
|- |.. .+++++..+++-. ++.++. +.++..++++.||+.++.- +.++.|+.++ .+.+|+||+.++. +.
T Consensus 183 sYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~l-Li~~G~~v~l~r~n~f 261 (322)
T PRK02797 183 GYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCL-LIQLGKPVVLSRDNPF 261 (322)
T ss_pred CcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHH-HHHCCCcEEEecCCch
Confidence 33 222 3566666665543 344433 5666669999999888775 6889997666 8999999999955 44
Q ss_pred -ccccccCCcEEee-C--CHHHHHHHHHHHHhCCCCCCChHHHhcCCHHHHHHHHHHHHHhcC
Q 010098 336 -NDFFKQFPNCRTY-D--GRNGFVEATLKALAEEPAQPTDAQTHQLSWESATERFLQVAELVG 394 (518)
Q Consensus 336 -~e~i~~~~~g~~~-~--d~~~l~~~i~~ll~~~~~~l~~~~~~~~sw~~~~~~~~~~y~~~~ 394 (518)
.++.+.+..-+.. + |...+.++=+++.......+ .|+-++..+.+.++++.+.
T Consensus 262 wqdl~e~gv~Vlf~~d~L~~~~v~e~~rql~~~dk~~I------~Ff~pn~~~~W~~~l~~~~ 318 (322)
T PRK02797 262 WQDLTEQGLPVLFTGDDLDEDIVREAQRQLASVDKNII------AFFSPNYLQGWRNALAIAA 318 (322)
T ss_pred HHHHHhCCCeEEecCCcccHHHHHHHHHHHHhhCccee------eecCHhHHHHHHHHHHHhh
Confidence 7777776666443 2 55555555444433322222 2888999999999998665
No 132
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.49 E-value=0.033 Score=51.94 Aligned_cols=188 Identities=15% Similarity=0.090 Sum_probs=103.1
Q ss_pred CCCCCcEEEEcCCchhhhhhchHHHHhhcCC--EEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEEEEeChh
Q 010098 114 PDEEADIAVLEEPEHLTWFHHGKRWKAKFRF--VVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAA 191 (518)
Q Consensus 114 ~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~--~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~ 191 (518)
.+..||+++...-... .....++++++. +|...+-..+ +. . -|.||+.-..
T Consensus 67 p~~~Pdl~I~aGrrta---~l~~~lkk~~~~~~vVqI~~Prlp-~~---------------------~--fDlvivp~HD 119 (329)
T COG3660 67 PEQRPDLIITAGRRTA---PLAFYLKKKFGGIKVVQIQDPRLP-YN---------------------H--FDLVIVPYHD 119 (329)
T ss_pred ccCCCceEEecccchh---HHHHHHHHhcCCceEEEeeCCCCC-cc---------------------c--ceEEeccchh
Confidence 3456999998876554 223447777763 3333332221 11 1 2777777643
Q ss_pred hhcc-C--CCceecccccCCC----CcCcchhhHHHhhcCCCCcccEEEEEEeecccCCH-----HHHHHHHHHHHHhcC
Q 010098 192 TQEY-P--NSIVCNVHGVNPK----FLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGY-----EELLGLLNIYHKELA 259 (518)
Q Consensus 192 ~~~~-~--~~~~~~~~GVd~~----~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~-----~~ll~a~~~l~~~~~ 259 (518)
-.+. . ...+..++|...+ +..+... ..+.........+.++||.-.+.-.+ ..+..++.+..++ .
T Consensus 120 ~~~~~s~~~~Nilpi~Gs~h~Vt~~~lAa~~e--~~~~~~p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~-~ 196 (329)
T COG3660 120 WREELSDQGPNILPINGSPHNVTSQRLAALRE--AFKHLLPLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILEN-Q 196 (329)
T ss_pred hhhhhhccCCceeeccCCCCcccHHHhhhhHH--HHHhhCCCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHh-C
Confidence 3331 1 1223333444332 2221111 11122222335677889976655444 2344444443332 2
Q ss_pred CcEEEEEeCCCChHHHHHHHHH-cC-CeEEEeCC----CCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 260 GLEMDLYGNGEDFDQIQRAAKK-LK-LVVRVYPG----RDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 260 ~~~l~ivG~g~~~~~l~~~~~~-~~-l~v~~~~~----~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
...+++--+....+.++..++. +. ....++.+ .....++++.||.+|.+.-+- +-.-||.|.|+||-+...
T Consensus 197 g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSi---nM~sEAasTgkPv~~~~~ 273 (329)
T COG3660 197 GGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSI---NMCSEAASTGKPVFILEP 273 (329)
T ss_pred CceEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecchh---hhhHHHhccCCCeEEEec
Confidence 4677777776677888887765 32 22445543 344559999999999875432 235799999999988755
Q ss_pred C
Q 010098 334 P 334 (518)
Q Consensus 334 g 334 (518)
+
T Consensus 274 ~ 274 (329)
T COG3660 274 P 274 (329)
T ss_pred C
Confidence 3
No 133
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.30 E-value=0.0019 Score=64.55 Aligned_cols=91 Identities=13% Similarity=-0.021 Sum_probs=62.2
Q ss_pred cEEEEEEee--cccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEe
Q 010098 230 KGAYYIGRM--VWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLN 307 (518)
Q Consensus 230 ~~il~vGr~--~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~ 307 (518)
.+.++-|+- +-.+.+..+++++.++.++. ..+++.+.. +.+.+++...+.. ...+. ++..++|+.||+.+.
T Consensus 169 ~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~--~~~~i~~a~-~~~~i~~~~~~~~-~~~~~---~~~~~~m~~aDlal~ 241 (347)
T PRK14089 169 TIAFMPGSRKSEIKRLMPIFKELAKKLEGKE--KILVVPSFF-KGKDLKEIYGDIS-EFEIS---YDTHKALLEAEFAFI 241 (347)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHhhcC--cEEEEeCCC-cHHHHHHHHhcCC-CcEEe---ccHHHHHHhhhHHHh
Confidence 344455532 22356678889998888653 677777764 3356666554332 33344 256689999999998
Q ss_pred cCCCCCCchHHHHHHHcCCeEEeeC
Q 010098 308 PSTTDVVCTATAEALAMGKIVVCAN 332 (518)
Q Consensus 308 pS~~E~~~~~~lEAma~G~PVV~t~ 332 (518)
.| |++.+|++.+|+|.|..-
T Consensus 242 ~S-----GT~TLE~al~g~P~Vv~Y 261 (347)
T PRK14089 242 CS-----GTATLEAALIGTPFVLAY 261 (347)
T ss_pred cC-----cHHHHHHHHhCCCEEEEE
Confidence 77 889999999999988853
No 134
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.23 E-value=0.076 Score=50.92 Aligned_cols=221 Identities=13% Similarity=0.073 Sum_probs=121.4
Q ss_pred hhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccE
Q 010098 106 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHK 184 (518)
Q Consensus 106 ~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 184 (518)
...|.+++.+++||+.+.-.... ..+.+..++ |.|....+...... ++...-+ |+.
T Consensus 73 ~~~L~ki~~~~kpdv~i~~~s~~------l~rvafgLg~psIi~~D~ehA~~q----------------nkl~~Pl-a~~ 129 (346)
T COG1817 73 VYKLSKIIAEFKPDVAIGKHSPE------LPRVAFGLGIPSIIFVDNEHAEAQ----------------NKLTLPL-ADV 129 (346)
T ss_pred HHHHHHHHhhcCCceEeecCCcc------hhhHHhhcCCceEEecCChhHHHH----------------hhcchhh-hhh
Confidence 44578889999999987632221 223445555 66654432221111 3333333 898
Q ss_pred EEEeChhhhc----cC--CCceecccccCC----CCcCcchhhHHHhhcCCCCcccEEEE------EEeecccCCHHHHH
Q 010098 185 VIRLSAATQE----YP--NSIVCNVHGVNP----KFLEIGEKKMEQQQNGNKAFTKGAYY------IGRMVWSKGYEELL 248 (518)
Q Consensus 185 vi~~S~~~~~----~~--~~~~~~~~GVd~----~~~~~~~~~~~~~~~~~~~~~~~il~------vGr~~~~Kg~~~ll 248 (518)
+++++....+ .- +..+...+|+-. ..|.|.+ ..-++.+...+.+.|++ ..-....++.+.+.
T Consensus 130 ii~P~~~~~~~~~~~G~~p~~i~~~~giae~~~v~~f~pd~--evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~ 207 (346)
T COG1817 130 IITPEAIDEEELLDFGADPNKISGYNGIAELANVYGFVPDP--EVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLP 207 (346)
T ss_pred eecccccchHHHHHhCCCccceecccceeEEeecccCCCCH--HHHHHcCCCCCCceEEEeeccccceeeccccchhhHH
Confidence 8888855442 21 223444455432 2244433 33455666554334331 11233466777778
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeC-CCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCe
Q 010098 249 GLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYP-GRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKI 327 (518)
Q Consensus 249 ~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~-~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~P 327 (518)
++++.+.+.. .+++-.... .++..+.+. +.+.. ...|.-+++-.|++.+-. -|+---||+..|+|
T Consensus 208 ~li~~l~k~g----iV~ipr~~~---~~eife~~~--n~i~pk~~vD~l~Llyya~lvig~-----ggTMarEaAlLGtp 273 (346)
T COG1817 208 DLIKELKKYG----IVLIPREKE---QAEIFEGYR--NIIIPKKAVDTLSLLYYATLVIGA-----GGTMAREAALLGTP 273 (346)
T ss_pred HHHHHHHhCc----EEEecCchh---HHHHHhhhc--cccCCcccccHHHHHhhhheeecC-----CchHHHHHHHhCCc
Confidence 8887776542 444443222 222222222 22222 233334677778887733 37778999999999
Q ss_pred EEeeCCCC----ccccccCCcEEee--CCHHHHHHHHHHHHhCCCC
Q 010098 328 VVCANHPS----NDFFKQFPNCRTY--DGRNGFVEATLKALAEEPA 367 (518)
Q Consensus 328 VV~t~~g~----~e~i~~~~~g~~~--~d~~~l~~~i~~ll~~~~~ 367 (518)
.|.+..|- .+... ..|.++ .|+.+..+...+.+.++..
T Consensus 274 aIs~~pGkll~vdk~li--e~G~~~~s~~~~~~~~~a~~~l~~~~~ 317 (346)
T COG1817 274 AISCYPGKLLAVDKYLI--EKGLLYHSTDEIAIVEYAVRNLKYRRL 317 (346)
T ss_pred eEEecCCccccccHHHH--hcCceeecCCHHHHHHHHHHHhhchhh
Confidence 99998651 23322 456665 3888888888888877753
No 135
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=97.13 E-value=0.025 Score=55.04 Aligned_cols=131 Identities=15% Similarity=0.117 Sum_probs=77.5
Q ss_pred ccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcE---EEEEeCCCChHHHHHHHHHcC--CeEEEeCCCCChHHHHhhcC
Q 010098 229 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLE---MDLYGNGEDFDQIQRAAKKLK--LVVRVYPGRDHADPIFHDYK 303 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~---l~ivG~g~~~~~l~~~~~~~~--l~v~~~~~~~~~~~l~~~ad 303 (518)
..+++.+|. -.-|.+++-.++ ......++++ +++.|.--..++..++.+.-. -.++++...++..++++.|+
T Consensus 220 ~~Ilvs~GG--G~dG~eLi~~~l-~A~~~l~~l~~~~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~ 296 (400)
T COG4671 220 FDILVSVGG--GADGAELIETAL-AAAQLLAGLNHKWLIVTGPFMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGAR 296 (400)
T ss_pred ceEEEecCC--ChhhHHHHHHHH-HHhhhCCCCCcceEEEeCCCCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhh
Confidence 556667764 233444333333 2223334443 445554222333344433333 34778888999999999999
Q ss_pred eeEecCCCCCCchHHHHHHHcCCeEEeeCCC--Ccccccc----CCcEEe----eC--CHHHHHHHHHHHHhCCC
Q 010098 304 VFLNPSTTDVVCTATAEALAMGKIVVCANHP--SNDFFKQ----FPNCRT----YD--GRNGFVEATLKALAEEP 366 (518)
Q Consensus 304 v~v~pS~~E~~~~~~lEAma~G~PVV~t~~g--~~e~i~~----~~~g~~----~~--d~~~l~~~i~~ll~~~~ 366 (518)
..|.-+- =+++.|-+++|||.+.-... +.|-... .+-|++ .+ +++.++++|..+++.|+
T Consensus 297 ~vVSm~G----YNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~P~ 367 (400)
T COG4671 297 LVVSMGG----YNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALARPS 367 (400)
T ss_pred eeeeccc----chhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccCCC
Confidence 9886543 35788999999997776554 3332211 233433 22 78889999998887543
No 136
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=96.89 E-value=0.049 Score=53.28 Aligned_cols=135 Identities=16% Similarity=0.076 Sum_probs=87.0
Q ss_pred ccEEEEEEee-cccCCHHHHHHHHHHHHHhcCCcEEEEE-eCCCC----hHHHHHHHHHc-CC-eEEEe---CCCCChHH
Q 010098 229 TKGAYYIGRM-VWSKGYEELLGLLNIYHKELAGLEMDLY-GNGED----FDQIQRAAKKL-KL-VVRVY---PGRDHADP 297 (518)
Q Consensus 229 ~~~il~vGr~-~~~Kg~~~ll~a~~~l~~~~~~~~l~iv-G~g~~----~~~l~~~~~~~-~l-~v~~~---~~~~~~~~ 297 (518)
.+.-+.+|+- ++..+..++++++.+.. ..++++++- |-|.. .+++++.++++ +. ++.++ .+.++.-+
T Consensus 184 ~~ltILvGNSgd~sNnHieaL~~L~~~~--~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~ 261 (360)
T PF07429_consen 184 GKLTILVGNSGDPSNNHIEALEALKQQF--GDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLA 261 (360)
T ss_pred CceEEEEcCCCCCCccHHHHHHHHHHhc--CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHH
Confidence 3445567754 45666777777766533 346887763 44432 35566666654 32 24443 35666669
Q ss_pred HHhhcCeeEecC-CCCCCchHHHHHHHcCCeEEeeCCC-C-ccccccCCcEEee-C--CHHHHHHHHHHHHhCCC
Q 010098 298 IFHDYKVFLNPS-TTDVVCTATAEALAMGKIVVCANHP-S-NDFFKQFPNCRTY-D--GRNGFVEATLKALAEEP 366 (518)
Q Consensus 298 l~~~adv~v~pS-~~E~~~~~~lEAma~G~PVV~t~~g-~-~e~i~~~~~g~~~-~--d~~~l~~~i~~ll~~~~ 366 (518)
+++.||+.++.. +..+.|+.++ .+.+|+||+.++.. . .++.+.+..-+.. | |...+.++=+++..-+.
T Consensus 262 lL~~cDl~if~~~RQQgiGnI~l-Ll~~G~~v~L~~~np~~~~l~~~~ipVlf~~d~L~~~~v~ea~rql~~~dk 335 (360)
T PF07429_consen 262 LLSRCDLGIFNHNRQQGIGNICL-LLQLGKKVFLSRDNPFWQDLKEQGIPVLFYGDELDEALVREAQRQLANVDK 335 (360)
T ss_pred HHHhCCEEEEeechhhhHhHHHH-HHHcCCeEEEecCChHHHHHHhCCCeEEeccccCCHHHHHHHHHHHhhCcc
Confidence 999999999997 5888887665 99999999999665 3 6666655444443 3 66777777666665433
No 137
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=96.60 E-value=0.00012 Score=65.55 Aligned_cols=103 Identities=15% Similarity=0.220 Sum_probs=63.5
Q ss_pred CcEEEE-EeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC---
Q 010098 260 GLEMDL-YGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS--- 335 (518)
Q Consensus 260 ~~~l~i-vG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~--- 335 (518)
++++++ .|.. ..+.........+..+.+++..+++.++|+.||+.|.- +-+.++.|++++|+|.|.-..+.
T Consensus 31 ~~~viv~~G~~-~~~~~~~~~~~~~~~v~~~~~~~~m~~~m~~aDlvIs~----aG~~Ti~E~l~~g~P~I~ip~~~~~~ 105 (167)
T PF04101_consen 31 NIQVIVQTGKN-NYEELKIKVENFNPNVKVFGFVDNMAELMAAADLVISH----AGAGTIAEALALGKPAIVIPLPGAAD 105 (167)
T ss_dssp HCCCCCCCTTC-ECHHHCCCHCCTTCCCEEECSSSSHHHHHHHHSEEEEC----S-CHHHHHHHHCT--EEEE--TTT-T
T ss_pred CcEEEEEECCC-cHHHHHHHHhccCCcEEEEechhhHHHHHHHcCEEEeC----CCccHHHHHHHcCCCeeccCCCCcch
Confidence 345544 4544 33333333444445678888888999999999988843 33679999999999987764432
Q ss_pred ------ccccccCCcEEee----CCHHHHHHHHHHHHhCCCC
Q 010098 336 ------NDFFKQFPNCRTY----DGRNGFVEATLKALAEEPA 367 (518)
Q Consensus 336 ------~e~i~~~~~g~~~----~d~~~l~~~i~~ll~~~~~ 367 (518)
...+.+...+... .+++.+.++|.++++++..
T Consensus 106 ~~q~~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~~~ 147 (167)
T PF04101_consen 106 NHQEENAKELAKKGAAIMLDESELNPEELAEAIEELLSDPEK 147 (167)
T ss_dssp -CHHHHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCCCHH-
T ss_pred HHHHHHHHHHHHcCCccccCcccCCHHHHHHHHHHHHcCcHH
Confidence 1223333333332 1577899999999887765
No 138
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.46 E-value=0.077 Score=52.29 Aligned_cols=193 Identities=13% Similarity=0.012 Sum_probs=106.5
Q ss_pred cCCCCCcEEEEcCCchhhhhhchHHHHhhcCCEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEEEEeChhh
Q 010098 113 IPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAAT 192 (518)
Q Consensus 113 i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~ 192 (518)
+....||+|+...-... .....+++..+.-..++|...+... ...+ |.||+....-
T Consensus 53 ~~~~~pdLiIsaGr~t~---~~~~~l~r~~gg~~~~V~i~~P~~~-------------------~~~F--Dlvi~p~HD~ 108 (311)
T PF06258_consen 53 LEPPWPDLIISAGRRTA---PAALALRRASGGRTKTVQIMDPRLP-------------------PRPF--DLVIVPEHDR 108 (311)
T ss_pred ccCCCCcEEEECCCchH---HHHHHHHHHcCCCceEEEEcCCCCC-------------------cccc--CEEEECcccC
Confidence 44456999999887665 2234455555532233332222111 1233 9999987552
Q ss_pred hccCCCceecccccCCCCcCcchhhHHH----hhcCCCCcccEEEEEEeecccC--CHH---HHHHHHHHHHHhcCCcEE
Q 010098 193 QEYPNSIVCNVHGVNPKFLEIGEKKMEQ----QQNGNKAFTKGAYYIGRMVWSK--GYE---ELLGLLNIYHKELAGLEM 263 (518)
Q Consensus 193 ~~~~~~~~~~~~GVd~~~~~~~~~~~~~----~~~~~~~~~~~il~vGr~~~~K--g~~---~ll~a~~~l~~~~~~~~l 263 (518)
-.-. ..+....| .++.+.+....... ......+...+.+.+|.-...- +.+ .+++.+..+.+..+ ..+
T Consensus 109 ~~~~-~Nvl~t~g-a~~~i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~-~~~ 185 (311)
T PF06258_consen 109 LPRG-PNVLPTLG-APNRITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYG-GSL 185 (311)
T ss_pred cCCC-CceEeccc-CCCcCCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCC-CeE
Confidence 2111 11222221 22333332222211 1122223355667788644332 223 67777777766664 889
Q ss_pred EEEeCCCChHHHHHHHHHcC---CeEEEeC--CCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC
Q 010098 264 DLYGNGEDFDQIQRAAKKLK---LVVRVYP--GRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS 335 (518)
Q Consensus 264 ~ivG~g~~~~~l~~~~~~~~---l~v~~~~--~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~ 335 (518)
.|..+.....+.++...++- ..+.++. +......+|+.||.++.+.-+ -.-+.||++.|+||.....++
T Consensus 186 ~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~i~VT~DS---vSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 186 LVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADAIVVTEDS---VSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred EEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCEEEEcCcc---HHHHHHHHHcCCCEEEecCCC
Confidence 99998777665555444332 2344554 344455999999988877533 335899999999999997753
No 139
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.21 E-value=1.6 Score=43.98 Aligned_cols=99 Identities=10% Similarity=0.126 Sum_probs=59.5
Q ss_pred ccEEEEEEeecccCCH--HHHHHHHHHHHHhcCCcEEEEEeCCCC--hHHHHHHHHHcCC-eEE-EeC--CCCChHHHHh
Q 010098 229 TKGAYYIGRMVWSKGY--EELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKL-VVR-VYP--GRDHADPIFH 300 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~--~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~~~l-~v~-~~~--~~~~~~~l~~ 300 (518)
..+++..|.-.+.|.+ +...+.+..+.+. +.+++++|+..+ .+..++.++.... .+. ..| ...+...+++
T Consensus 184 ~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~--~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~ 261 (352)
T PRK10422 184 NYVVIQPTARQIFKCWDNDKFSAVIDALQAR--GYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALID 261 (352)
T ss_pred CeEEEecCCCccccCCCHHHHHHHHHHHHHC--CCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHH
Confidence 4566777765566665 4677777777543 678888876432 2223444443221 222 223 2345558899
Q ss_pred hcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCC
Q 010098 301 DYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP 334 (518)
Q Consensus 301 ~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g 334 (518)
.||++|.... - .+==|.|+|+|+|+--.+
T Consensus 262 ~a~l~v~nDS---G--p~HlAaA~g~P~v~lfGp 290 (352)
T PRK10422 262 HAQLFIGVDS---A--PAHIAAAVNTPLICLFGA 290 (352)
T ss_pred hCCEEEecCC---H--HHHHHHHcCCCEEEEECC
Confidence 9999996643 2 333477899999987443
No 140
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.10 E-value=0.62 Score=45.22 Aligned_cols=98 Identities=15% Similarity=0.074 Sum_probs=62.2
Q ss_pred EEEEEEeecccC--CHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcC-CeEE-EeCC--CCChHHHHhhcCe
Q 010098 231 GAYYIGRMVWSK--GYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLK-LVVR-VYPG--RDHADPIFHDYKV 304 (518)
Q Consensus 231 ~il~vGr~~~~K--g~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~-l~v~-~~~~--~~~~~~l~~~adv 304 (518)
+++..|.-...| ..+.+.+.++.+.++ +++++++|+.++.+..+++.+..+ ..+. +.+. ..+...+++.||+
T Consensus 124 i~i~~~~~~~~k~w~~~~~~~l~~~l~~~--~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l 201 (279)
T cd03789 124 VVLPPGASGPAKRWPAERFAALADRLLAR--GARVVLTGGPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARADL 201 (279)
T ss_pred EEECCCCCCccccCCHHHHHHHHHHHHHC--CCEEEEEechhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCE
Confidence 344444433334 346777788777765 789999998666666666665542 2222 2332 2445588899999
Q ss_pred eEecCCCCCCchHHHHHHHcCCeEEeeCCCC
Q 010098 305 FLNPSTTDVVCTATAEALAMGKIVVCANHPS 335 (518)
Q Consensus 305 ~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~ 335 (518)
+|.+.. |. +--|.|+|+|+|+--.++
T Consensus 202 ~I~~Ds----g~-~HlA~a~~~p~i~l~g~~ 227 (279)
T cd03789 202 VVTNDS----GP-MHLAAALGTPTVALFGPT 227 (279)
T ss_pred EEeeCC----HH-HHHHHHcCCCEEEEECCC
Confidence 997752 33 333579999999885543
No 141
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=95.96 E-value=0.086 Score=46.00 Aligned_cols=79 Identities=15% Similarity=0.126 Sum_probs=47.2
Q ss_pred HhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC--CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEEEE
Q 010098 110 TEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIR 187 (518)
Q Consensus 110 ~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~ 187 (518)
.+......+|+|++++.-.+.-+ ..+...+. |.+..+|.+...|........ ...-.+.+++.-.-||.|+.
T Consensus 52 ~~~~~~~~~dll~aTsmldLa~l---~gL~p~l~~~p~ilYFHENQl~YP~~~~~~r---d~~~~~~ni~saLaAD~v~F 125 (168)
T PF12038_consen 52 QQIPLSHSYDLLFATSMLDLATL---RGLRPDLANVPKILYFHENQLAYPVSPGQER---DFQYGMNNIYSALAADRVVF 125 (168)
T ss_pred hccccccCCCEEEeeccccHHHH---HhhccCCCCCCEEEEEecCcccCCCCCCccc---cccHHHHHHHHHHhceeeee
Confidence 44455667899999987666333 22333434 899999999555543322111 11122233333334899999
Q ss_pred eChhhhc
Q 010098 188 LSAATQE 194 (518)
Q Consensus 188 ~S~~~~~ 194 (518)
.|..-++
T Consensus 126 NS~~nr~ 132 (168)
T PF12038_consen 126 NSAFNRD 132 (168)
T ss_pred cchhhHH
Confidence 9987766
No 142
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=95.86 E-value=0.003 Score=62.66 Aligned_cols=99 Identities=12% Similarity=0.109 Sum_probs=66.0
Q ss_pred ChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----ccccccCC-cEE-eeC----CH----HHHHHHH
Q 010098 294 HADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFP-NCR-TYD----GR----NGFVEAT 358 (518)
Q Consensus 294 ~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~~~-~g~-~~~----d~----~~l~~~i 358 (518)
+.+++.+.|++.|+||.+|++|.+..|+--||+|-|+|+..| .|.+++.. .|+ ++| .+ +++++-+
T Consensus 493 DYeeFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~~~m 572 (692)
T KOG3742|consen 493 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLASFM 572 (692)
T ss_pred CHHHHhccccccccccccCCCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEecccCChhhHHHHHHHHH
Confidence 566999999999999999999999999999999999999864 56665533 333 332 34 4455555
Q ss_pred HHHHhCCCC-CCChHHH-----hcCCHHHHHHHHHHHHHh
Q 010098 359 LKALAEEPA-QPTDAQT-----HQLSWESATERFLQVAEL 392 (518)
Q Consensus 359 ~~ll~~~~~-~l~~~~~-----~~~sw~~~~~~~~~~y~~ 392 (518)
.+....... ++-++-| .-.+|.....-|.+.=..
T Consensus 573 ~~F~~qsRRQRIiqRNrtErLSdLLDWk~lG~~Y~~aR~l 612 (692)
T KOG3742|consen 573 YEFCKQSRRQRIIQRNRTERLSDLLDWKYLGRYYRKARHL 612 (692)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHhHHHHhHHHHHHHHH
Confidence 554433222 2211111 456788777666655443
No 143
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.81 E-value=2.5 Score=43.78 Aligned_cols=116 Identities=11% Similarity=0.111 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeC-------CCCh-HHHHHHHHHcCCe--EEEeC-CCCChH--HHHhhcCeeEecCCC
Q 010098 245 EELLGLLNIYHKELAGLEMDLYGN-------GEDF-DQIQRAAKKLKLV--VRVYP-GRDHAD--PIFHDYKVFLNPSTT 311 (518)
Q Consensus 245 ~~ll~a~~~l~~~~~~~~l~ivG~-------g~~~-~~l~~~~~~~~l~--v~~~~-~~~~~~--~l~~~adv~v~pS~~ 311 (518)
..+.+++..+.++ +.+++++-. ++++ ...+++.+.+.-. +++.. ...+.+ .+++.||++|..-.+
T Consensus 260 ~~la~~i~~Li~~--g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~RlH 337 (426)
T PRK10017 260 KAFAGVVNRIIDE--GYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDPARYHVVMDELNDLEMGKILGACELTVGTRLH 337 (426)
T ss_pred HHHHHHHHHHHHC--CCeEEEEecccCccCCCCchHHHHHHHHHhcccccceeEecCCCChHHHHHHHhhCCEEEEecch
Confidence 3455666666555 455555543 2333 2234554544322 23322 333334 889999999976543
Q ss_pred CCCchHHHHHHHcCCeEEeeCCCC--ccccccC-CcEEee--C--CHHHHHHHHHHHHhCCCC
Q 010098 312 DVVCTATAEALAMGKIVVCANHPS--NDFFKQF-PNCRTY--D--GRNGFVEATLKALAEEPA 367 (518)
Q Consensus 312 E~~~~~~lEAma~G~PVV~t~~g~--~e~i~~~-~~g~~~--~--d~~~l~~~i~~ll~~~~~ 367 (518)
.++=|+++|+|+|+-.... ..++.+- ...++. + +.+++.+.+.+++++.+.
T Consensus 338 -----a~I~a~~~gvP~i~i~Y~~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~r~~ 395 (426)
T PRK10017 338 -----SAIISMNFGTPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQLPA 395 (426)
T ss_pred -----HHHHHHHcCCCEEEeeehHHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHhCHHH
Confidence 5778999999999987642 4444322 122322 2 678899999999987653
No 144
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.73 E-value=0.72 Score=46.19 Aligned_cols=100 Identities=13% Similarity=0.132 Sum_probs=67.8
Q ss_pred ccEEEEEE-eecccCCHH--HHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeC--CCCChHHHHhhcC
Q 010098 229 TKGAYYIG-RMVWSKGYE--ELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYP--GRDHADPIFHDYK 303 (518)
Q Consensus 229 ~~~il~vG-r~~~~Kg~~--~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~--~~~~~~~l~~~ad 303 (518)
..+++..| .-...|++. .+.+.+..+.+++ .+++++|+..+.+..+++.+..+..+.+.+ +..+...+++.||
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~--~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~ 253 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKG--YQVVLFGGPDEEERAEEIAKGLPNAVILAGKTSLEELAALIAGAD 253 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCC--CEEEEecChHHHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcCC
Confidence 35556666 444667654 7777777777764 899999988666677777776654333333 3345558888999
Q ss_pred eeEecCCCCCCchHHHHHHHcCCeEEeeCCCC
Q 010098 304 VFLNPSTTDVVCTATAEALAMGKIVVCANHPS 335 (518)
Q Consensus 304 v~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~ 335 (518)
++|.+.. | .+==|.|.|+|+|+--.+.
T Consensus 254 l~I~~DS----g-~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 254 LVIGNDS----G-PMHLAAALGTPTIALYGPT 280 (334)
T ss_pred EEEccCC----h-HHHHHHHcCCCEEEEECCC
Confidence 9997753 2 3334899999999985443
No 145
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=95.44 E-value=0.15 Score=54.13 Aligned_cols=125 Identities=15% Similarity=0.009 Sum_probs=71.3
Q ss_pred ccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEec
Q 010098 229 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNP 308 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~p 308 (518)
..+++..|.+.. .-.+..++++.+..++.|+ ++++.-.+.....+.+ ++.+. ..-...++++...+-++=
T Consensus 277 ~vv~vsfGs~~~-~~~~~~~~~~~~~~~~~~~-~~iW~~~~~~~~~l~~-------n~~~~-~W~PQ~~lL~hp~v~~fi 346 (500)
T PF00201_consen 277 GVVYVSFGSIVS-SMPEEKLKEIAEAFENLPQ-RFIWKYEGEPPENLPK-------NVLIV-KWLPQNDLLAHPRVKLFI 346 (500)
T ss_dssp EEEEEE-TSSST-T-HHHHHHHHHHHHHCSTT-EEEEEETCSHGCHHHT-------TEEEE-SS--HHHHHTSTTEEEEE
T ss_pred CEEEEecCcccc-hhHHHHHHHHHHHHhhCCC-cccccccccccccccc-------eEEEe-ccccchhhhhcccceeee
Confidence 445566677653 2344445555544466666 7777666532332221 23333 334456888766543332
Q ss_pred CCCCCCchHHHHHHHcCCeEEeeCCCC-----ccccccCCcEEeeC----CHHHHHHHHHHHHhCC
Q 010098 309 STTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEE 365 (518)
Q Consensus 309 S~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~~~~g~~~~----d~~~l~~~i~~ll~~~ 365 (518)
+ -|--+++.||+.+|+|+|+-..-+ ...+.+...|...+ +.+++.++|.++++|+
T Consensus 347 t--HgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~ 410 (500)
T PF00201_consen 347 T--HGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLENP 410 (500)
T ss_dssp E--S--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSH
T ss_pred e--ccccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhh
Confidence 3 345778999999999999997744 34444545565542 7899999999999874
No 146
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=95.17 E-value=0.16 Score=52.14 Aligned_cols=37 Identities=11% Similarity=-0.031 Sum_probs=26.6
Q ss_pred CCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChh
Q 010098 115 DEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYL 154 (518)
Q Consensus 115 ~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~ 154 (518)
...||+||.|+.+.. ..+..++.+++ |...+.|....
T Consensus 399 ~~~PdlI~GnYsDgn---lvA~LLs~~lgv~~~~iaHsLek 436 (550)
T PF00862_consen 399 QGKPDLIIGNYSDGN---LVASLLSRKLGVTQCFIAHSLEK 436 (550)
T ss_dssp TS--SEEEEEHHHHH---HHHHHHHHHHT-EEEEE-SS-HH
T ss_pred CCCCcEEEeccCcch---HHHHHHHhhcCCceehhhhcccc
Confidence 357999999998877 34777889988 89999997743
No 147
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=94.52 E-value=0.19 Score=51.14 Aligned_cols=176 Identities=10% Similarity=0.013 Sum_probs=84.4
Q ss_pred ccEEEEeChhhhccCC------CceecccccCC-C-CcCcch--hhHHHhhcCCCCcccEEEEEEeecccCC------HH
Q 010098 182 CHKVIRLSAATQEYPN------SIVCNVHGVNP-K-FLEIGE--KKMEQQQNGNKAFTKGAYYIGRMVWSKG------YE 245 (518)
Q Consensus 182 ad~vi~~S~~~~~~~~------~~~~~~~GVd~-~-~~~~~~--~~~~~~~~~~~~~~~~il~vGr~~~~Kg------~~ 245 (518)
.|.+++.|+..++... .......|..- + .+.... ........+.+.++++|+|+=+...... ..
T Consensus 135 ~d~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~~~~~~~i~~~~~~~~~~k~ILyaPT~R~~~~~~~~~~~~ 214 (369)
T PF04464_consen 135 YDYFIVSSEFEKEIFKKAFGYPEDKILVTGYPRNDYLFNKSKENRNRIKKKLGIDKDKKVILYAPTWRDNSSNEYFKFFF 214 (369)
T ss_dssp -SEEEESSHHHHHHHHHHTT--GGGEEES--GGGHHHHHSTT-HHHHHHHHTT--SS-EEEEEE----GGG--GGSS---
T ss_pred CcEEEECCHHHHHHHHHHhccCcceEEEeCCCeEhHHhccCHHHHHHHHHHhccCCCCcEEEEeeccccccccccccccc
Confidence 6999999988777321 11122234321 1 111111 1223444666677789999865432211 12
Q ss_pred HHH--HHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHH
Q 010098 246 ELL--GLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALA 323 (518)
Q Consensus 246 ~ll--~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma 323 (518)
..+ +.+. ....+++.+++-............ ......+.......+..+++..||++|.= ++.++.|++.
T Consensus 215 ~~~~~~~l~--~~~~~~~~li~k~Hp~~~~~~~~~-~~~~~~i~~~~~~~~~~~ll~~aDiLITD-----ySSi~fD~~~ 286 (369)
T PF04464_consen 215 SDLDFEKLN--FLLKNNYVLIIKPHPNMKKKFKDF-KEDNSNIIFVSDNEDIYDLLAAADILITD-----YSSIIFDFLL 286 (369)
T ss_dssp -TT-HHHHH--HHHTTTEEEEE--SHHHHTT-----TT-TTTEEE-TT-S-HHHHHHT-SEEEES-----S-THHHHHGG
T ss_pred cccCHHHHH--HHhCCCcEEEEEeCchhhhchhhh-hccCCcEEECCCCCCHHHHHHhcCEEEEe-----chhHHHHHHH
Confidence 222 2222 223447877776641111111111 11222355556667888999999999832 3668999999
Q ss_pred cCCeEEee--CCC------C--ccccccCCcEEeeCCHHHHHHHHHHHHhCCC
Q 010098 324 MGKIVVCA--NHP------S--NDFFKQFPNCRTYDGRNGFVEATLKALAEEP 366 (518)
Q Consensus 324 ~G~PVV~t--~~g------~--~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~~ 366 (518)
+++|||.. |.. | .+ ..+...|-++.|.+++.++|..+++++.
T Consensus 287 l~KPiify~~D~~~Y~~~rg~~~~-~~~~~pg~~~~~~~eL~~~i~~~~~~~~ 338 (369)
T PF04464_consen 287 LNKPIIFYQPDLEEYEKERGFYFD-YEEDLPGPIVYNFEELIEAIENIIENPD 338 (369)
T ss_dssp GT--EEEE-TTTTTTTTTSSBSS--TTTSSSS-EESSHHHHHHHHTTHHHHHH
T ss_pred hCCCEEEEeccHHHHhhccCCCCc-hHhhCCCceeCCHHHHHHHHHhhhhCCH
Confidence 99999965 331 1 12 2233445567799999999999886543
No 148
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=94.30 E-value=0.59 Score=44.39 Aligned_cols=98 Identities=15% Similarity=0.085 Sum_probs=54.3
Q ss_pred ccEEEEEEeecccCCHH--HHHHHHHHHHHhcCCcEEEEEeCCCC--hHHHHHHHHHcCC-eEEEeCC--CCChHHHHhh
Q 010098 229 TKGAYYIGRMVWSKGYE--ELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKL-VVRVYPG--RDHADPIFHD 301 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~--~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~~~l-~v~~~~~--~~~~~~l~~~ 301 (518)
..+++..|.-.+.|.+. ...+.+..+.+.+ ..++++|+..+ .+..+...+.... .+.+.+. ..+...+++.
T Consensus 106 ~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~--~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~ 183 (247)
T PF01075_consen 106 PYIGINPGASWPSKRWPAEKWAELIERLKERG--YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISR 183 (247)
T ss_dssp SEEEEE---SSGGGS--HHHHHHHHHHHCCCT---EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHT
T ss_pred CeEEEeecCCCccccCCHHHHHHHHHHHHhhC--ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhc
Confidence 45677777767777765 4777777776553 78888898665 2333344333321 2334443 2233488889
Q ss_pred cCeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 302 YKVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 302 adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
||++|.+-. | .+==|.|+|+|+|+-=.
T Consensus 184 a~~~I~~Dt----g-~~HlA~a~~~p~v~lfg 210 (247)
T PF01075_consen 184 ADLVIGNDT----G-PMHLAAALGTPTVALFG 210 (247)
T ss_dssp SSEEEEESS----H-HHHHHHHTT--EEEEES
T ss_pred CCEEEecCC----h-HHHHHHHHhCCEEEEec
Confidence 999997753 2 34448999999999843
No 149
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=94.28 E-value=0.73 Score=44.54 Aligned_cols=85 Identities=14% Similarity=0.189 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEeCCC-----ChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchH
Q 010098 243 GYEELLGLLNIYHKELAGLEMDLYGNGE-----DFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTA 317 (518)
Q Consensus 243 g~~~ll~a~~~l~~~~~~~~l~ivG~g~-----~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~ 317 (518)
+...+++.+..+.+..|+.++++-=... ....+.+... ...+.+.....+..+++..||..+.-+ +++
T Consensus 138 ~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Ll~~s~~Vvtin-----Stv 210 (269)
T PF05159_consen 138 SQADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPN--LPNVVIIDDDVNLYELLEQSDAVVTIN-----STV 210 (269)
T ss_pred cHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhc--CCCeEEECCCCCHHHHHHhCCEEEEEC-----CHH
Confidence 5667777887777888888887754321 1122222211 122445566668889999999766443 568
Q ss_pred HHHHHHcCCeEEeeCCC
Q 010098 318 TAEALAMGKIVVCANHP 334 (518)
Q Consensus 318 ~lEAma~G~PVV~t~~g 334 (518)
-+||+.+|+||++...+
T Consensus 211 GlEAll~gkpVi~~G~~ 227 (269)
T PF05159_consen 211 GLEALLHGKPVIVFGRA 227 (269)
T ss_pred HHHHHHcCCceEEecCc
Confidence 99999999999998664
No 150
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.10 E-value=1.3 Score=46.64 Aligned_cols=170 Identities=11% Similarity=-0.005 Sum_probs=106.2
Q ss_pred HHhhcCCCCcccEEEEEEeec-ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCC-ChHHHHHHHHHcCCe-EE-EeCCCCC
Q 010098 219 EQQQNGNKAFTKGAYYIGRMV-WSKGYEELLGLLNIYHKELAGLEMDLYGNGE-DFDQIQRAAKKLKLV-VR-VYPGRDH 294 (518)
Q Consensus 219 ~~~~~~~~~~~~~il~vGr~~-~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~-~~~~l~~~~~~~~l~-v~-~~~~~~~ 294 (518)
.+..++++++..+ | |.+. -.|=-...++.+.++.++.|+..|++.-... -++.++..+.++|++ .+ +|.++.-
T Consensus 749 ~r~~y~Lp~d~vv--f-~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~ 825 (966)
T KOG4626|consen 749 TRSQYGLPEDAVV--F-CNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAA 825 (966)
T ss_pred CCCCCCCCCCeEE--E-eechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccc
Confidence 3456677765533 3 3333 3566668899999999999998887764411 147889999999987 22 3444332
Q ss_pred hH---HHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-------ccccccCCcEEeeCCHHHHHHHHHHHHhC
Q 010098 295 AD---PIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-------NDFFKQFPNCRTYDGRNGFVEATLKALAE 364 (518)
Q Consensus 295 ~~---~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-------~e~i~~~~~g~~~~d~~~l~~~i~~ll~~ 364 (518)
.+ .-...+||.+-+...-| -++-.|.+.+|+|+|+-.... .-...-|-.-++..+.++..+.-.++..|
T Consensus 826 k~eHvrr~~LaDv~LDTplcnG-hTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak~~eEY~~iaV~Latd 904 (966)
T KOG4626|consen 826 KEEHVRRGQLADVCLDTPLCNG-HTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAKNREEYVQIAVRLATD 904 (966)
T ss_pred hHHHHHhhhhhhhcccCcCcCC-cccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhhhHHHHHHHHHHhhcC
Confidence 23 45567888887765544 345689999999999865422 22222222224456888888888888877
Q ss_pred CCC--CCChHHH------hcCCHHHHHHHHHHHHHh
Q 010098 365 EPA--QPTDAQT------HQLSWESATERFLQVAEL 392 (518)
Q Consensus 365 ~~~--~l~~~~~------~~~sw~~~~~~~~~~y~~ 392 (518)
.+. .++..-+ --|+-...+..++..|..
T Consensus 905 ~~~L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~~ 940 (966)
T KOG4626|consen 905 KEYLKKLRAKLRKARASSPLFDTKQYAKGLERLYLQ 940 (966)
T ss_pred HHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHH
Confidence 664 3333222 445555555555555553
No 151
>PLN02448 UDP-glycosyltransferase family protein
Probab=93.93 E-value=1.3 Score=46.49 Aligned_cols=125 Identities=14% Similarity=0.010 Sum_probs=72.9
Q ss_pred ccEEEEEEeecc--cCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeE
Q 010098 229 TKGAYYIGRMVW--SKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFL 306 (518)
Q Consensus 229 ~~~il~vGr~~~--~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v 306 (518)
..+.+..|.... .+-+..++++++ .. +..++++..++ ...+.+... -+..+. +.-...++++..++..
T Consensus 275 ~vvyvsfGs~~~~~~~~~~~~~~~l~---~~--~~~~lw~~~~~-~~~~~~~~~---~~~~v~-~w~pQ~~iL~h~~v~~ 344 (459)
T PLN02448 275 SVLYVSLGSFLSVSSAQMDEIAAGLR---DS--GVRFLWVARGE-ASRLKEICG---DMGLVV-PWCDQLKVLCHSSVGG 344 (459)
T ss_pred ceEEEeecccccCCHHHHHHHHHHHH---hC--CCCEEEEEcCc-hhhHhHhcc---CCEEEe-ccCCHHHHhccCccce
Confidence 456667777643 122344444443 22 45777665433 222333221 123333 4556678898888633
Q ss_pred ecCCCCCCchHHHHHHHcCCeEEeeCCCC-----ccccccC-CcEEee---------CCHHHHHHHHHHHHhCC
Q 010098 307 NPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQF-PNCRTY---------DGRNGFVEATLKALAEE 365 (518)
Q Consensus 307 ~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~~-~~g~~~---------~d~~~l~~~i~~ll~~~ 365 (518)
+-+ -+--++++||+++|+|+|+-...+ ...+.+. ..|+-. -+.+++.+++++++.++
T Consensus 345 fvt--HgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~ 416 (459)
T PLN02448 345 FWT--HCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLE 416 (459)
T ss_pred EEe--cCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCC
Confidence 222 344678999999999999987754 3333331 233332 26789999999999875
No 152
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=93.92 E-value=0.61 Score=48.81 Aligned_cols=150 Identities=22% Similarity=0.250 Sum_probs=99.5
Q ss_pred ccEEEEEEeec-ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEe
Q 010098 229 TKGAYYIGRMV-WSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLN 307 (518)
Q Consensus 229 ~~~il~vGr~~-~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~ 307 (518)
.+..+..|+-. -+||-+..++++.+. -+++-.+.+.......+-..++.+|+ .+..+..++++.+.|||-
T Consensus 277 ~~~AlVyGK~~~~w~~k~~~l~~l~~~----~eih~tV~~~~~~~~~~P~~V~NHG~-----l~~~ef~~lL~~akvfiG 347 (559)
T PF15024_consen 277 KNQALVYGKERYMWKGKEKYLDVLHKY----MEIHGTVYDEPQRPPNVPSFVKNHGI-----LSGDEFQQLLRKAKVFIG 347 (559)
T ss_pred cceeEEEccchhhhcCcHHHHHHHHhh----cEEEEEeccCCCCCcccchhhhhcCc-----CCHHHHHHHHHhhhEeee
Confidence 44555666544 367888888888442 25566665543333445555555553 466777899999999996
Q ss_pred cCC-CCCCchHHHHHHHcCCeEEeeCCC---C---cccccc-------------------CCcEEeeC--CHHHHHHHHH
Q 010098 308 PST-TDVVCTATAEALAMGKIVVCANHP---S---NDFFKQ-------------------FPNCRTYD--GRNGFVEATL 359 (518)
Q Consensus 308 pS~-~E~~~~~~lEAma~G~PVV~t~~g---~---~e~i~~-------------------~~~g~~~~--d~~~l~~~i~ 359 (518)
... +| |=+-+||+|+|+|.|-.... + .+++.+ .+..+.+| |.+++.+||+
T Consensus 348 lGfP~E--gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVytVd~~n~~~v~~Avk 425 (559)
T PF15024_consen 348 LGFPYE--GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYTVDINNSTEVEAAVK 425 (559)
T ss_pred cCCCCC--CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEEEcCCCHHHHHHHHH
Confidence 543 45 34689999999999987542 1 223322 23334454 9999999999
Q ss_pred HHHhCCCCCCChHHHhcCCHHHHHHHHHHHHHh
Q 010098 360 KALAEEPAQPTDAQTHQLSWESATERFLQVAEL 392 (518)
Q Consensus 360 ~ll~~~~~~l~~~~~~~~sw~~~~~~~~~~y~~ 392 (518)
++++++....- -..|+-+.+.+|+..+.+.
T Consensus 426 ~il~~~v~Py~---P~efT~egmLeRv~~~ie~ 455 (559)
T PF15024_consen 426 AILATPVEPYL---PYEFTCEGMLERVNALIEK 455 (559)
T ss_pred HHHhcCCCCcC---CcccCHHHHHHHHHHHHHh
Confidence 99998754111 1478889999999888774
No 153
>PRK14986 glycogen phosphorylase; Provisional
Probab=93.18 E-value=0.5 Score=52.00 Aligned_cols=131 Identities=15% Similarity=0.062 Sum_probs=90.6
Q ss_pred CCcccEEEEEEeecccCCHHH-HHHH---HHHHHHhc----CCcEEEEEeCCCC-h-------HHHHHHHH------HcC
Q 010098 226 KAFTKGAYYIGRMVWSKGYEE-LLGL---LNIYHKEL----AGLEMDLYGNGED-F-------DQIQRAAK------KLK 283 (518)
Q Consensus 226 ~~~~~~il~vGr~~~~Kg~~~-ll~a---~~~l~~~~----~~~~l~ivG~g~~-~-------~~l~~~~~------~~~ 283 (518)
+++...++++-|+..+|...+ ++.. +.++++.- ....+++.|.... . ..+.+.++ ..+
T Consensus 540 dp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~Dp~v~ 619 (815)
T PRK14986 540 NPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQIG 619 (815)
T ss_pred CcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhccChhhc
Confidence 455677788889999999888 5555 44554331 2367777776222 1 22223333 111
Q ss_pred --CeEEEeCCCC--ChHHHHhhcCeeEecCC--CCCCchHHHHHHHcCCeEEeeCCCC-cccccc--CCcEEeeC-CHHH
Q 010098 284 --LVVRVYPGRD--HADPIFHDYKVFLNPST--TDVVCTATAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD-GRNG 353 (518)
Q Consensus 284 --l~v~~~~~~~--~~~~l~~~adv~v~pS~--~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~--~~~g~~~~-d~~~ 353 (518)
+.+.|+..++ -.+.++..||+..+.|+ .|..|+.=+=+|.-|.+.++|-.|. .|+.++ +.||+++. +.++
T Consensus 620 ~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG~eN~~~fG~~~~e 699 (815)
T PRK14986 620 DKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENIFIFGNTAEE 699 (815)
T ss_pred CceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHHhcCCCcEEEeCCCHHH
Confidence 2455666443 44488999999999885 8999999999999999999998887 788776 78999985 5555
Q ss_pred HHH
Q 010098 354 FVE 356 (518)
Q Consensus 354 l~~ 356 (518)
+.+
T Consensus 700 v~~ 702 (815)
T PRK14986 700 VEA 702 (815)
T ss_pred HHH
Confidence 544
No 154
>PLN02670 transferase, transferring glycosyl groups
Probab=92.78 E-value=2 Score=45.03 Aligned_cols=74 Identities=11% Similarity=0.052 Sum_probs=51.5
Q ss_pred CCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----ccccccCCcEEeeC--------CHHHHHHH
Q 010098 291 GRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD--------GRNGFVEA 357 (518)
Q Consensus 291 ~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~~~~g~~~~--------d~~~l~~~ 357 (518)
+.-...++++..++-.+-++ +--++++||+++|+|+|+-...+ ...+..-..|+.++ +.+++.++
T Consensus 345 ~W~PQ~~IL~H~~v~~FvtH--cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~~e~i~~a 422 (472)
T PLN02670 345 GWVPQVKILSHESVGGFLTH--CGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFTSDSVAES 422 (472)
T ss_pred CcCCHHHHhcCcccceeeec--CCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCcHHHHHHH
Confidence 44456678887776333333 44678999999999999987643 33444455665441 57899999
Q ss_pred HHHHHhCCC
Q 010098 358 TLKALAEEP 366 (518)
Q Consensus 358 i~~ll~~~~ 366 (518)
|.+++.+++
T Consensus 423 v~~vm~~~~ 431 (472)
T PLN02670 423 VRLAMVDDA 431 (472)
T ss_pred HHHHhcCcc
Confidence 999998753
No 155
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=92.40 E-value=3 Score=43.60 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=51.0
Q ss_pred CCCChHHHHhhcCe--eEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----ccccccC-CcEEee---CCHHHHHHHHH
Q 010098 291 GRDHADPIFHDYKV--FLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQF-PNCRTY---DGRNGFVEATL 359 (518)
Q Consensus 291 ~~~~~~~l~~~adv--~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~~-~~g~~~---~d~~~l~~~i~ 359 (518)
+.-...++++..++ ||. -+--++++||+++|+|+|+....+ ...+.+. ..|+.. -+.++++++++
T Consensus 330 ~w~PQ~~iL~h~~v~~fvt----H~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~v~~av~ 405 (451)
T PLN02410 330 KWAPQKEVLSHPAVGGFWS----HCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDRGAVERAVK 405 (451)
T ss_pred ccCCHHHHhCCCccCeeee----cCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccHHHHHHHHH
Confidence 45566678888665 662 234568999999999999987653 3333332 456554 28899999999
Q ss_pred HHHhCCC
Q 010098 360 KALAEEP 366 (518)
Q Consensus 360 ~ll~~~~ 366 (518)
+++.+++
T Consensus 406 ~lm~~~~ 412 (451)
T PLN02410 406 RLMVEEE 412 (451)
T ss_pred HHHcCCc
Confidence 9998753
No 156
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=92.10 E-value=0.5 Score=42.02 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=49.2
Q ss_pred CCCCcEEEEcCCchhhhhhchHHHHhhcC--CEEEEEeC----Chhh--hhhhhcchHHHHHHH---HHHHHHHhhhhcc
Q 010098 115 DEEADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHT----NYLE--YVKREKNDRLQAFLL---EFVNSWLARVHCH 183 (518)
Q Consensus 115 ~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~--~~v~~~h~----~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~ad 183 (518)
-+.||||+.|....-+++ ++.-+. |++..+-- ...+ +....... ...... +.....+....||
T Consensus 64 Gf~PDvI~~H~GWGe~Lf-----lkdv~P~a~li~Y~E~~y~~~g~d~~FDpe~p~~-~~~~~~~r~rN~~~l~~l~~~D 137 (171)
T PF12000_consen 64 GFVPDVIIAHPGWGETLF-----LKDVFPDAPLIGYFEFYYRASGADVGFDPEFPPS-LDDRARLRMRNAHNLLALEQAD 137 (171)
T ss_pred CCCCCEEEEcCCcchhhh-----HHHhCCCCcEEEEEEEEecCCCCcCCCCCCCCCC-HHHHHHHHHHhHHHHHHHHhCC
Confidence 456999999998777666 666664 66554321 1100 00000111 111111 1222222222599
Q ss_pred EEEEeChhhhcc-C---CCceeccc-ccCCCCc
Q 010098 184 KVIRLSAATQEY-P---NSIVCNVH-GVNPKFL 211 (518)
Q Consensus 184 ~vi~~S~~~~~~-~---~~~~~~~~-GVd~~~~ 211 (518)
..++.|...+.. | ++++.+++ |||++.+
T Consensus 138 ~~isPT~wQ~~~fP~~~r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 138 AGISPTRWQRSQFPAEFRSKISVIHDGIDTDRF 170 (171)
T ss_pred cCcCCCHHHHHhCCHHHHcCcEEeecccchhhc
Confidence 999999888873 2 34455554 9998764
No 157
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=91.99 E-value=0.7 Score=50.88 Aligned_cols=131 Identities=14% Similarity=0.061 Sum_probs=89.8
Q ss_pred CCcccEEEEEEeecccCCHHH-HHH---HHHHHHHhc----CCcEEEEEeCCCC-h-------HHHHHHHHH------cC
Q 010098 226 KAFTKGAYYIGRMVWSKGYEE-LLG---LLNIYHKEL----AGLEMDLYGNGED-F-------DQIQRAAKK------LK 283 (518)
Q Consensus 226 ~~~~~~il~vGr~~~~Kg~~~-ll~---a~~~l~~~~----~~~~l~ivG~g~~-~-------~~l~~~~~~------~~ 283 (518)
+++...++++-|+..+|...+ ++. .+.++++.- ....+++.|.... . ..+...++. .+
T Consensus 527 dp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~ 606 (797)
T cd04300 527 DPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPDVG 606 (797)
T ss_pred CCCccEEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhcC
Confidence 556777888999999999888 544 455555431 1256666665222 1 222233332 11
Q ss_pred --CeEEEeCCC--CChHHHHhhcCeeEecCC--CCCCchHHHHHHHcCCeEEeeCCCC-cccccc--CCcEEeeC-CHHH
Q 010098 284 --LVVRVYPGR--DHADPIFHDYKVFLNPST--TDVVCTATAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD-GRNG 353 (518)
Q Consensus 284 --l~v~~~~~~--~~~~~l~~~adv~v~pS~--~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~--~~~g~~~~-d~~~ 353 (518)
+.+.|+..+ +-.+.++..||+-.+.|+ .|..|+.=+=+|.-|.+.++|-.|. .|+.+. +.|++++. +.++
T Consensus 607 ~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~e 686 (797)
T cd04300 607 DKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENIFIFGLTAEE 686 (797)
T ss_pred CceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHHHhCcCcEEEeCCCHHH
Confidence 235566644 344588999999998885 8999999999999999999998886 777766 78999986 5555
Q ss_pred HHH
Q 010098 354 FVE 356 (518)
Q Consensus 354 l~~ 356 (518)
+.+
T Consensus 687 v~~ 689 (797)
T cd04300 687 VEA 689 (797)
T ss_pred HHH
Confidence 544
No 158
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=91.93 E-value=1.2 Score=35.53 Aligned_cols=72 Identities=8% Similarity=0.077 Sum_probs=52.0
Q ss_pred EEEEeC-CCChHHHHHHHHHcCCeEEEe---CCCC----ChHHHHhhcCeeEecCC---CCCCchHHHHHHHcCCeEEee
Q 010098 263 MDLYGN-GEDFDQIQRAAKKLKLVVRVY---PGRD----HADPIFHDYKVFLNPST---TDVVCTATAEALAMGKIVVCA 331 (518)
Q Consensus 263 l~ivG~-g~~~~~l~~~~~~~~l~v~~~---~~~~----~~~~l~~~adv~v~pS~---~E~~~~~~lEAma~G~PVV~t 331 (518)
++|+|+ ......+++.++++|....++ ++.. ..+..+..+|+.|++.. ++..-.+--+|-..|+|++.+
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEE
Confidence 567776 345788999999999988777 3222 25577888898777753 344555567788899999999
Q ss_pred CCC
Q 010098 332 NHP 334 (518)
Q Consensus 332 ~~g 334 (518)
+..
T Consensus 82 ~~~ 84 (97)
T PF10087_consen 82 RSR 84 (97)
T ss_pred CCC
Confidence 863
No 159
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=91.86 E-value=1.9 Score=46.95 Aligned_cols=131 Identities=14% Similarity=0.056 Sum_probs=79.3
Q ss_pred CCcccEEEEEEeecccCCHHH-H---HHHHHHHHHhc----CCcEEEEEeCCCC-h---HHHHHHHHH----------cC
Q 010098 226 KAFTKGAYYIGRMVWSKGYEE-L---LGLLNIYHKEL----AGLEMDLYGNGED-F---DQIQRAAKK----------LK 283 (518)
Q Consensus 226 ~~~~~~il~vGr~~~~Kg~~~-l---l~a~~~l~~~~----~~~~l~ivG~g~~-~---~~l~~~~~~----------~~ 283 (518)
+++...++++-|+..+|...+ + ++.+.++++.- ....+++.|..-. . .++-+++.. .+
T Consensus 441 dp~slfdv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d~~gK~iIk~I~~va~~in~Dp~v~ 520 (713)
T PF00343_consen 441 DPDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGDYMGKEIIKLINNVAEVINNDPEVG 520 (713)
T ss_dssp -TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-HHHHHHHHHHHHHHHHHCT-TTTC
T ss_pred CcchhhhhhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHHhcChhhc
Confidence 455667788999999999887 3 45556665542 2367777776322 2 222222211 11
Q ss_pred --CeEEEeCCCC--ChHHHHhhcCeeEecCC--CCCCchHHHHHHHcCCeEEeeCCCC-cccccc--CCcEEeeC-CHHH
Q 010098 284 --LVVRVYPGRD--HADPIFHDYKVFLNPST--TDVVCTATAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD-GRNG 353 (518)
Q Consensus 284 --l~v~~~~~~~--~~~~l~~~adv~v~pS~--~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~--~~~g~~~~-d~~~ 353 (518)
+.+.|+..++ -.+.++..+||-.+.|+ .|..|+.-+=+|.-|.+.+++-.|. -|+.+. ..|++++. +.++
T Consensus 521 ~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~vG~eN~fiFG~~~~e 600 (713)
T PF00343_consen 521 DRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAVGEENIFIFGLTAEE 600 (713)
T ss_dssp CGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-GGGSEEES-BHHH
T ss_pred cceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhcCCCcEEEcCCCHHH
Confidence 2456666554 33488899999999885 8999999999999999999998887 677643 46788885 5555
Q ss_pred HHH
Q 010098 354 FVE 356 (518)
Q Consensus 354 l~~ 356 (518)
+.+
T Consensus 601 v~~ 603 (713)
T PF00343_consen 601 VEE 603 (713)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 160
>PLN03004 UDP-glycosyltransferase
Probab=91.48 E-value=1.2 Score=46.52 Aligned_cols=72 Identities=10% Similarity=-0.010 Sum_probs=50.2
Q ss_pred CCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----ccccc-cCCcEEee-------CCHHHHHHH
Q 010098 291 GRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFK-QFPNCRTY-------DGRNGFVEA 357 (518)
Q Consensus 291 ~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~-~~~~g~~~-------~d~~~l~~~ 357 (518)
+.-...++++.+++-.+-++ +--++++||+++|+|+|+....+ ...+. .-..|... -+.+++.++
T Consensus 340 ~W~PQ~~iL~H~~v~~FvTH--~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~a 417 (451)
T PLN03004 340 SWAPQVPVLNHKAVGGFVTH--CGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKR 417 (451)
T ss_pred eeCCHHHHhCCCccceEecc--CcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHH
Confidence 34566679999998333333 34568999999999999987643 33443 32455443 177899999
Q ss_pred HHHHHhC
Q 010098 358 TLKALAE 364 (518)
Q Consensus 358 i~~ll~~ 364 (518)
|++++++
T Consensus 418 v~~vm~~ 424 (451)
T PLN03004 418 VQEIIGE 424 (451)
T ss_pred HHHHhcC
Confidence 9999975
No 161
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=91.28 E-value=1.3 Score=48.20 Aligned_cols=123 Identities=15% Similarity=0.060 Sum_probs=85.8
Q ss_pred CcccEEEEEEeecccCCHHHHHHHHHHHHHh-----cCCcEEEEEeCCCC-h-------HHHHHHHHHc--CCeEEEeCC
Q 010098 227 AFTKGAYYIGRMVWSKGYEELLGLLNIYHKE-----LAGLEMDLYGNGED-F-------DQIQRAAKKL--KLVVRVYPG 291 (518)
Q Consensus 227 ~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~-----~~~~~l~ivG~g~~-~-------~~l~~~~~~~--~l~v~~~~~ 291 (518)
++...++++=|+..+|...+.+.-+..+... .|.+.+++.|..-. . ..+...++.. .++|.|+..
T Consensus 485 p~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~n 564 (750)
T COG0058 485 PNALFDGQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLPN 564 (750)
T ss_pred CCcceeeeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeCC
Confidence 4567788888999999877655444443322 24455566665221 1 2233333332 245667775
Q ss_pred CC--ChHHHHhhcCeeEecCC--CCCCchHHHHHHHcCCeEEeeCCCC-ccccc--cCCcEEeeC
Q 010098 292 RD--HADPIFHDYKVFLNPST--TDVVCTATAEALAMGKIVVCANHPS-NDFFK--QFPNCRTYD 349 (518)
Q Consensus 292 ~~--~~~~l~~~adv~v~pS~--~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~--~~~~g~~~~ 349 (518)
++ -.+-++..|||-.+.|+ .|..|++=+=||.-|.+-|+|-.|. -|+.+ ++.|||++.
T Consensus 565 YdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~vg~~N~~~fG 629 (750)
T COG0058 565 YDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFG 629 (750)
T ss_pred CChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHhcCCCceEEeC
Confidence 54 33478889999998875 8999999999999999999998887 78776 889999985
No 162
>PLN02562 UDP-glycosyltransferase
Probab=90.09 E-value=2.8 Score=43.75 Aligned_cols=126 Identities=11% Similarity=-0.006 Sum_probs=72.3
Q ss_pred ccEEEEEEeec---ccCCHHHHHHHHHHHHHhcCCcEEEE-EeCC---CChHHHHHHHHHcCCeEEEeCCCCChHHHHhh
Q 010098 229 TKGAYYIGRMV---WSKGYEELLGLLNIYHKELAGLEMDL-YGNG---EDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD 301 (518)
Q Consensus 229 ~~~il~vGr~~---~~Kg~~~ll~a~~~l~~~~~~~~l~i-vG~g---~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~ 301 (518)
..+.+..|.+. ..+-+..++.+++++ +. ++++ +..+ ...+.+.+... -++.+. +.-...++++.
T Consensus 274 svvyvsfGS~~~~~~~~~~~~l~~~l~~~----g~-~fiW~~~~~~~~~l~~~~~~~~~---~~~~v~-~w~PQ~~iL~h 344 (448)
T PLN02562 274 SVIYISFGSWVSPIGESNVRTLALALEAS----GR-PFIWVLNPVWREGLPPGYVERVS---KQGKVV-SWAPQLEVLKH 344 (448)
T ss_pred ceEEEEecccccCCCHHHHHHHHHHHHHC----CC-CEEEEEcCCchhhCCHHHHHHhc---cCEEEE-ecCCHHHHhCC
Confidence 35666777754 233445555555332 22 4444 3321 11222333222 123333 45566788988
Q ss_pred cCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----cccccc-CCcEEeeC--CHHHHHHHHHHHHhCC
Q 010098 302 YKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQ-FPNCRTYD--GRNGFVEATLKALAEE 365 (518)
Q Consensus 302 adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~-~~~g~~~~--d~~~l~~~i~~ll~~~ 365 (518)
.++..+-++ +--++++||+++|+|+|+...-+ ...+.+ -..|+-+. +.+++++++++++.++
T Consensus 345 ~~v~~fvtH--~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~l~~~v~~~l~~~ 414 (448)
T PLN02562 345 QAVGCYLTH--CGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGFGQKEVEEGLRKVMEDS 414 (448)
T ss_pred CccceEEec--CcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCCCHHHHHHHHHHHhCCH
Confidence 775433333 33678999999999999987653 333433 24455442 7899999999999764
No 163
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=90.06 E-value=4.2 Score=40.26 Aligned_cols=126 Identities=15% Similarity=0.052 Sum_probs=73.7
Q ss_pred ccEEEEEEeecccCCH--HHHHHHHHHHHHhcCCcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeC--CCCChHHHHhhcC
Q 010098 229 TKGAYYIGRMVWSKGY--EELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLVVRVYP--GRDHADPIFHDYK 303 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~--~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~--~~~~~~~l~~~ad 303 (518)
..+++..|.-...|.+ +.+.+.+..+.++ +.+++++|++++ .+..+++.+..+. ..+.+ ...+...+++.||
T Consensus 180 ~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~--~~~~vl~~g~~~e~~~~~~i~~~~~~-~~l~g~~sL~el~ali~~a~ 256 (319)
T TIGR02193 180 PYAVLLHATSRDDKTWPEERWRELARLLLAR--GLQIVLPWGNDAEKQRAERIAEALPG-AVVLPKMSLAEVAALLAGAD 256 (319)
T ss_pred CEEEEEeCCCcccCCCCHHHHHHHHHHHHHC--CCeEEEeCCCHHHHHHHHHHHhhCCC-CeecCCCCHHHHHHHHHcCC
Confidence 4566677755566765 4777777777654 678888755554 3445555554432 23334 2334448889999
Q ss_pred eeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-cccc-ccCCc-EEe-----eC-CHHHHHHHHHHHH
Q 010098 304 VFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFF-KQFPN-CRT-----YD-GRNGFVEATLKAL 362 (518)
Q Consensus 304 v~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i-~~~~~-g~~-----~~-d~~~l~~~i~~ll 362 (518)
++|.... .+ +==|.|+|+|+|+--.++ +... .-+.+ ..+ .+ ++++..+++.+++
T Consensus 257 l~I~~DS---gp--~HlAaa~g~P~i~lfg~t~p~~~~P~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 257 AVVGVDT---GL--THLAAALDKPTVTLYGATDPGRTGGYGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred EEEeCCC---hH--HHHHHHcCCCEEEEECCCCHhhcccCCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 9997643 23 333778899999874433 1111 11111 111 12 7888888887653
No 164
>PLN02173 UDP-glucosyl transferase family protein
Probab=89.75 E-value=5.2 Score=41.72 Aligned_cols=74 Identities=9% Similarity=0.052 Sum_probs=51.2
Q ss_pred CCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----ccccccC-CcEEee--C------CHHHHHH
Q 010098 291 GRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQF-PNCRTY--D------GRNGFVE 356 (518)
Q Consensus 291 ~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~~-~~g~~~--~------d~~~l~~ 356 (518)
+.-...++++..++..+-++ +-.++++||+++|+|+|+-..-+ ...+.+. ..|+-+ + +.+++.+
T Consensus 323 ~W~PQ~~iL~H~~v~~FvtH--cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~ 400 (449)
T PLN02173 323 KWSPQLQVLSNKAIGCFMTH--CGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEF 400 (449)
T ss_pred CCCCHHHHhCCCccceEEec--CccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHH
Confidence 44556688988875444443 44678999999999999987643 3444432 344432 1 6799999
Q ss_pred HHHHHHhCCC
Q 010098 357 ATLKALAEEP 366 (518)
Q Consensus 357 ~i~~ll~~~~ 366 (518)
++++++.+++
T Consensus 401 av~~vm~~~~ 410 (449)
T PLN02173 401 SIKEVMEGEK 410 (449)
T ss_pred HHHHHhcCCh
Confidence 9999997654
No 165
>PLN03007 UDP-glucosyltransferase family protein
Probab=89.68 E-value=8.6 Score=40.60 Aligned_cols=72 Identities=13% Similarity=-0.017 Sum_probs=46.7
Q ss_pred CCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----cccccc-CCcEEe---------e---CCHHH
Q 010098 292 RDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQ-FPNCRT---------Y---DGRNG 353 (518)
Q Consensus 292 ~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~-~~~g~~---------~---~d~~~ 353 (518)
.-...+++..+++-.+-++ +--++++||+++|+|+|+...-+ ...+.+ -..|+- . -+.++
T Consensus 352 w~PQ~~iL~h~~v~~fvtH--~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 429 (482)
T PLN03007 352 WAPQVLILDHQATGGFVTH--CGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREK 429 (482)
T ss_pred CCCHHHHhccCccceeeec--CcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHH
Confidence 3455688898876333332 33678999999999999987654 221111 011111 1 17889
Q ss_pred HHHHHHHHHhCC
Q 010098 354 FVEATLKALAEE 365 (518)
Q Consensus 354 l~~~i~~ll~~~ 365 (518)
+.+++++++.++
T Consensus 430 l~~av~~~m~~~ 441 (482)
T PLN03007 430 VEKAVREVIVGE 441 (482)
T ss_pred HHHHHHHHhcCc
Confidence 999999999875
No 166
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=89.52 E-value=0.78 Score=50.34 Aligned_cols=130 Identities=15% Similarity=0.079 Sum_probs=88.5
Q ss_pred CCcccEEEEEEeecccCCHHH-HHHHH---HHHHHhcCC-----cEEEEEeCCCC-h---H----HHHHHHHHcC-----
Q 010098 226 KAFTKGAYYIGRMVWSKGYEE-LLGLL---NIYHKELAG-----LEMDLYGNGED-F---D----QIQRAAKKLK----- 283 (518)
Q Consensus 226 ~~~~~~il~vGr~~~~Kg~~~-ll~a~---~~l~~~~~~-----~~l~ivG~g~~-~---~----~l~~~~~~~~----- 283 (518)
+++...++++-|+..+|...+ ++..+ .++++. |+ ..+++.|.... . . .+...++..+
T Consensus 526 dp~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~-p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v 604 (798)
T PRK14985 526 NPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIREN-PQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPLV 604 (798)
T ss_pred CchhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHhC-CCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhcCChhh
Confidence 455566777789999998887 65554 444433 32 66777776222 1 2 2223332221
Q ss_pred ---CeEEEeCCC--CChHHHHhhcCeeEecCC--CCCCchHHHHHHHcCCeEEeeCCCC-cccccc--CCcEEeeC-CHH
Q 010098 284 ---LVVRVYPGR--DHADPIFHDYKVFLNPST--TDVVCTATAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD-GRN 352 (518)
Q Consensus 284 ---l~v~~~~~~--~~~~~l~~~adv~v~pS~--~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~--~~~g~~~~-d~~ 352 (518)
+.+.|+..+ +-.+.++..+|+..+.|+ .|..|+.=+=+|.-|.+.++|-.|. .|+.+. +.|+|++. +.+
T Consensus 605 ~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~vG~eN~f~fG~~~~ 684 (798)
T PRK14985 605 GDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENIFIFGHTVE 684 (798)
T ss_pred CCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHHhCcCcEEEeCCCHH
Confidence 235566644 344588999999998885 8999999999999999999998886 777765 78999985 555
Q ss_pred HHHH
Q 010098 353 GFVE 356 (518)
Q Consensus 353 ~l~~ 356 (518)
++.+
T Consensus 685 ev~~ 688 (798)
T PRK14985 685 QVKA 688 (798)
T ss_pred HHHH
Confidence 5443
No 167
>PLN02210 UDP-glucosyl transferase
Probab=89.52 E-value=5.7 Score=41.61 Aligned_cols=130 Identities=12% Similarity=0.016 Sum_probs=71.9
Q ss_pred ccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEE-EeCCC---ChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCe
Q 010098 229 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDL-YGNGE---DFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKV 304 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i-vG~g~---~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv 304 (518)
..+.+..|..... .-+.+-+.+.-+... +.+|++ ++... +.+.+++.... + +..+. +.....++++.+++
T Consensus 270 svvyvsfGS~~~~-~~~~~~e~a~~l~~~--~~~flw~~~~~~~~~~~~~~~~~~~~-~-~g~v~-~w~PQ~~iL~h~~v 343 (456)
T PLN02210 270 SVVYISFGSMLES-LENQVETIAKALKNR--GVPFLWVIRPKEKAQNVQVLQEMVKE-G-QGVVL-EWSPQEKILSHMAI 343 (456)
T ss_pred ceEEEEecccccC-CHHHHHHHHHHHHhC--CCCEEEEEeCCccccchhhHHhhccC-C-CeEEE-ecCCHHHHhcCcCc
Confidence 4556667776432 333344444444333 334444 34211 22333333210 1 12222 45566689998883
Q ss_pred eEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----cccccc-CCcEEee--------CCHHHHHHHHHHHHhCCC
Q 010098 305 FLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQ-FPNCRTY--------DGRNGFVEATLKALAEEP 366 (518)
Q Consensus 305 ~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~-~~~g~~~--------~d~~~l~~~i~~ll~~~~ 366 (518)
..+-++ +--++++||+++|+|+|+-...+ ...+.+ -..|... -+.+++.+++++++.+++
T Consensus 344 g~FitH--~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~ 417 (456)
T PLN02210 344 SCFVTH--CGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPA 417 (456)
T ss_pred CeEEee--CCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCch
Confidence 333332 33458999999999999987754 333333 3455443 177899999999997643
No 168
>PLN00164 glucosyltransferase; Provisional
Probab=89.22 E-value=8 Score=40.80 Aligned_cols=74 Identities=8% Similarity=-0.130 Sum_probs=49.8
Q ss_pred CCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----cccc-ccCCcEEeeC---------CHHHHH
Q 010098 291 GRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFF-KQFPNCRTYD---------GRNGFV 355 (518)
Q Consensus 291 ~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i-~~~~~g~~~~---------d~~~l~ 355 (518)
+.-...+++...++-.+-++ +--++++||+++|+|+|+-..-+ ...+ +.-..|+..+ +.+++.
T Consensus 345 ~w~PQ~~iL~h~~vg~fvtH--~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~ 422 (480)
T PLN00164 345 TWAPQKEILAHAAVGGFVTH--CGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELE 422 (480)
T ss_pred ecCCHHHHhcCcccCeEEee--cccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHH
Confidence 44566678888875333332 33568999999999999987643 2233 3334454431 578999
Q ss_pred HHHHHHHhCCC
Q 010098 356 EATLKALAEEP 366 (518)
Q Consensus 356 ~~i~~ll~~~~ 366 (518)
++|.+++.+++
T Consensus 423 ~av~~vm~~~~ 433 (480)
T PLN00164 423 RAVRSLMGGGE 433 (480)
T ss_pred HHHHHHhcCCc
Confidence 99999998753
No 169
>PLN02208 glycosyltransferase family protein
Probab=89.10 E-value=10 Score=39.55 Aligned_cols=131 Identities=11% Similarity=0.039 Sum_probs=73.9
Q ss_pred ccEEEEEEeecccCCHHHHHHHHHHH-HHhcCCcEEEEEeC-C--C----ChHHHHHHHHHcCCeEEEeCCCCChHHHHh
Q 010098 229 TKGAYYIGRMVWSKGYEELLGLLNIY-HKELAGLEMDLYGN-G--E----DFDQIQRAAKKLKLVVRVYPGRDHADPIFH 300 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~~ll~a~~~l-~~~~~~~~l~ivG~-g--~----~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~ 300 (518)
..+.+..|.... -..+.+.+.+..+ ....| +.+++--. + . ..+.+++.++..|+ +..+.-...++++
T Consensus 252 sVvyvSfGS~~~-l~~~q~~e~~~~l~~s~~p-f~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~---~v~~W~PQ~~iL~ 326 (442)
T PLN02208 252 SVVFCSLGSQII-LEKDQFQELCLGMELTGLP-FLIAVKPPRGSSTVQEGLPEGFEERVKGRGV---VWGGWVQQPLILD 326 (442)
T ss_pred cEEEEecccccc-CCHHHHHHHHHHHHhCCCc-EEEEEeCCCcccchhhhCCHHHHHHHhcCCc---EeeccCCHHHHhc
Confidence 455556676652 2444556655544 23332 33333211 1 1 12333444433332 2334455667888
Q ss_pred hcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----cccccc-CCcEEeeC-------CHHHHHHHHHHHHhCCC
Q 010098 301 DYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQ-FPNCRTYD-------GRNGFVEATLKALAEEP 366 (518)
Q Consensus 301 ~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~-~~~g~~~~-------d~~~l~~~i~~ll~~~~ 366 (518)
..++-.+-|+ +--++++||+++|+|+|+-..-+ ...+.+ -..|+..+ +.+++.++|.++++++.
T Consensus 327 H~~v~~FvtH--cG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~ 403 (442)
T PLN02208 327 HPSIGCFVNH--CGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDS 403 (442)
T ss_pred CCccCeEEcc--CCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCc
Confidence 8876444443 44578999999999999987753 232222 34454441 67899999999997663
No 170
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=89.08 E-value=3.2 Score=41.45 Aligned_cols=99 Identities=16% Similarity=0.106 Sum_probs=62.0
Q ss_pred ccEEEEEEee-cccCCHH--HHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEE-EeC--CCCChHHHHhhc
Q 010098 229 TKGAYYIGRM-VWSKGYE--ELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVR-VYP--GRDHADPIFHDY 302 (518)
Q Consensus 229 ~~~il~vGr~-~~~Kg~~--~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~-~~~--~~~~~~~l~~~a 302 (518)
..+++..|.- .+.|.+. ...+.+..+.+. +.++++.|+..+.+..+++.+..+-.+. ..+ ...+...+++.|
T Consensus 175 ~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~--~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~~a 252 (334)
T TIGR02195 175 PIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQ--GYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLIALA 252 (334)
T ss_pred CEEEEcCCCCCCccCCCCHHHHHHHHHHHHHC--CCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHHHhC
Confidence 3445566653 3566554 777777777543 5789999987666666666554432222 223 233555889999
Q ss_pred CeeEecCCCCCCchHHHHHHHcCCeEEeeCCC
Q 010098 303 KVFLNPSTTDVVCTATAEALAMGKIVVCANHP 334 (518)
Q Consensus 303 dv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g 334 (518)
|++|.... - .+==|.|+|+|+|+--.+
T Consensus 253 ~l~I~~DS---G--p~HlAaA~~~P~i~lfG~ 279 (334)
T TIGR02195 253 KAVVTNDS---G--LMHVAAALNRPLVALYGS 279 (334)
T ss_pred CEEEeeCC---H--HHHHHHHcCCCEEEEECC
Confidence 99997643 2 333478999999987443
No 171
>PLN00414 glycosyltransferase family protein
Probab=88.95 E-value=4.9 Score=41.93 Aligned_cols=130 Identities=8% Similarity=0.068 Sum_probs=74.8
Q ss_pred ccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEE---eCCC----ChHHHHHHHHHcCCeEEEeCCCCChHHHHhh
Q 010098 229 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLY---GNGE----DFDQIQRAAKKLKLVVRVYPGRDHADPIFHD 301 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~iv---G~g~----~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~ 301 (518)
..+.+..|.+... ..+.+.+.+.-|....-.+-.++- |.+. ..+.+++.++..|+ +..+.-...++++.
T Consensus 253 sVvyvsfGS~~~~-~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~---vv~~w~PQ~~vL~h 328 (446)
T PLN00414 253 SVVFCAFGTQFFF-EKDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGI---VWEGWVEQPLILSH 328 (446)
T ss_pred ceEEEeecccccC-CHHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCCe---EEeccCCHHHHhcC
Confidence 4445566665432 234555555544444323333332 1111 12345554443332 33345566788887
Q ss_pred cCe--eEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----cccc-ccCCcEEee-------CCHHHHHHHHHHHHhCCC
Q 010098 302 YKV--FLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFF-KQFPNCRTY-------DGRNGFVEATLKALAEEP 366 (518)
Q Consensus 302 adv--~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i-~~~~~g~~~-------~d~~~l~~~i~~ll~~~~ 366 (518)
..+ || + -+--++++||+++|+|+|+-...+ ...+ +.-..|..+ -+.+++.+++++++.++.
T Consensus 329 ~~v~~fv--t--H~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~ 404 (446)
T PLN00414 329 PSVGCFV--N--HCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDS 404 (446)
T ss_pred CccceEE--e--cCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCCh
Confidence 754 66 2 344678999999999999987653 3344 233555444 277899999999997653
No 172
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=88.67 E-value=1.2 Score=48.90 Aligned_cols=131 Identities=14% Similarity=0.073 Sum_probs=89.5
Q ss_pred CCcccEEEEEEeecccCCHHH-HHHH---HHHHHHhcC-----CcEEEEEeCCCC-h---HH----HHHHHHHc------
Q 010098 226 KAFTKGAYYIGRMVWSKGYEE-LLGL---LNIYHKELA-----GLEMDLYGNGED-F---DQ----IQRAAKKL------ 282 (518)
Q Consensus 226 ~~~~~~il~vGr~~~~Kg~~~-ll~a---~~~l~~~~~-----~~~l~ivG~g~~-~---~~----l~~~~~~~------ 282 (518)
+++....+++-|+..+|...+ ++.. +.++++. | ...+++.|.... . .. +...++..
T Consensus 524 dp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~-p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v 602 (794)
T TIGR02093 524 DPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKED-PPKDIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPAV 602 (794)
T ss_pred CccccchhhheechhhhHHHHHHhhhHHHHHHHHhC-CCcCCCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHhccChhh
Confidence 455667778889999999888 5554 4455433 3 346777776222 1 22 22222221
Q ss_pred --CCeEEEeCCC--CChHHHHhhcCeeEecCC--CCCCchHHHHHHHcCCeEEeeCCCC-cccccc--CCcEEeeC-CHH
Q 010098 283 --KLVVRVYPGR--DHADPIFHDYKVFLNPST--TDVVCTATAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD-GRN 352 (518)
Q Consensus 283 --~l~v~~~~~~--~~~~~l~~~adv~v~pS~--~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~--~~~g~~~~-d~~ 352 (518)
.+.+.|+..+ +-.+.++..||+..+.|+ .|..|+.=+=+|.-|.+.++|-.|. .|+.++ +.|++++. +.+
T Consensus 603 ~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~ 682 (794)
T TIGR02093 603 GDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREEVGAENIFIFGLTVE 682 (794)
T ss_pred CCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHHHhCcccEEEcCCCHH
Confidence 1245566644 344588999999998885 8999999999999999999998886 777766 78999986 666
Q ss_pred HHHHH
Q 010098 353 GFVEA 357 (518)
Q Consensus 353 ~l~~~ 357 (518)
++.+.
T Consensus 683 ev~~~ 687 (794)
T TIGR02093 683 EVEAL 687 (794)
T ss_pred HHHHH
Confidence 55543
No 173
>PLN02764 glycosyltransferase family protein
Probab=88.44 E-value=11 Score=39.43 Aligned_cols=73 Identities=11% Similarity=0.015 Sum_probs=49.9
Q ss_pred CCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----cccccc-CCcEEee-------CCHHHHHHH
Q 010098 291 GRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQ-FPNCRTY-------DGRNGFVEA 357 (518)
Q Consensus 291 ~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~-~~~g~~~-------~d~~~l~~~ 357 (518)
+.-...++++...+..+-+ -+--++++||+++|+|+|+-...+ ...+.+ -..|+.. -+.+++.++
T Consensus 323 ~W~PQ~~vL~h~~v~~Fvt--H~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~a 400 (453)
T PLN02764 323 GWVQQPLILSHPSVGCFVS--HCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDA 400 (453)
T ss_pred CCCCHHHHhcCcccCeEEe--cCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHH
Confidence 4456667888765533323 344678999999999999997754 344432 2444432 177899999
Q ss_pred HHHHHhCC
Q 010098 358 TLKALAEE 365 (518)
Q Consensus 358 i~~ll~~~ 365 (518)
++++++++
T Consensus 401 v~~vm~~~ 408 (453)
T PLN02764 401 INSVMKRD 408 (453)
T ss_pred HHHHhcCC
Confidence 99999865
No 174
>PLN02555 limonoid glucosyltransferase
Probab=87.69 E-value=11 Score=39.61 Aligned_cols=71 Identities=21% Similarity=0.237 Sum_probs=47.5
Q ss_pred CCChHHHHhh--cCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----ccccccC-CcEEee------C---CHHHH
Q 010098 292 RDHADPIFHD--YKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQF-PNCRTY------D---GRNGF 354 (518)
Q Consensus 292 ~~~~~~l~~~--adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~~-~~g~~~------~---d~~~l 354 (518)
.-...++++. +.+|| +-+--++++||+++|+|+|+...-+ ...+.+. ..|+.. . +.+++
T Consensus 344 W~PQ~~iL~H~~v~~Fv----tH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v 419 (480)
T PLN02555 344 WCPQEKVLAHPSVACFV----THCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEV 419 (480)
T ss_pred cCCHHHHhCCCccCeEE----ecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHH
Confidence 3445677754 45666 2344678999999999999987643 3333333 445443 1 57899
Q ss_pred HHHHHHHHhCCC
Q 010098 355 VEATLKALAEEP 366 (518)
Q Consensus 355 ~~~i~~ll~~~~ 366 (518)
.++|++++.+++
T Consensus 420 ~~~v~~vm~~~~ 431 (480)
T PLN02555 420 AECLLEATVGEK 431 (480)
T ss_pred HHHHHHHhcCch
Confidence 999999997643
No 175
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=86.96 E-value=13 Score=36.23 Aligned_cols=142 Identities=15% Similarity=0.061 Sum_probs=74.1
Q ss_pred ccEEEEeChhhhccCCCceeccc-ccCCCCcCcchhhHHHhhcCCCCcccEEEEEEeec---ccCCHHHHHHHHHHHHHh
Q 010098 182 CHKVIRLSAATQEYPNSIVCNVH-GVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMV---WSKGYEELLGLLNIYHKE 257 (518)
Q Consensus 182 ad~vi~~S~~~~~~~~~~~~~~~-GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~---~~Kg~~~ll~a~~~l~~~ 257 (518)
+|.+.+--+...++.++...++. +.|+.+.-+.... . .......+.|++.-+-. ..+.++.+.+++..+.++
T Consensus 128 ~~~i~vRD~~S~~~l~~~g~~i~~~~D~a~~l~~~~~--~--~~~~~~~~~i~i~~r~~~~~~~~~~~~l~~~l~~l~~~ 203 (298)
T TIGR03609 128 CRAISVRDAASYRLLKRLGIPAELAADPVWLLPPEPW--P--GGEPLPEPVIVVSLRPWPLLDVSRLLRLLRALDRLQRD 203 (298)
T ss_pred CCEEEEeCHHHHHHHHHhCCCceEeCChhhhCCCCcc--c--ccccCCCCeEEEEECCCCcCCHHHHHHHHHHHHHHHHh
Confidence 68887777666665443322222 3454432211110 0 01111233444333321 112355677777777555
Q ss_pred cCCcEEEEEeC--CCChHHHHHHHHHcCCeEEEeC--CCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 258 LAGLEMDLYGN--GEDFDQIQRAAKKLKLVVRVYP--GRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 258 ~~~~~l~ivG~--g~~~~~l~~~~~~~~l~v~~~~--~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
. +.+++++.. ..|.+..+++.+.+.-...+.. ...+..++++.||++|-...+ .++=|+.+|+|+|+-..
T Consensus 204 ~-g~~v~~i~~~~~~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~RlH-----~~I~A~~~gvP~i~i~y 277 (298)
T TIGR03609 204 T-GAFVLFLPFQQPQDLPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMRLH-----ALILAAAAGVPFVALSY 277 (298)
T ss_pred h-CCeEEEEeCCcchhHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEechH-----HHHHHHHcCCCEEEeec
Confidence 3 456655543 2344444555555432223332 222334778899988877654 57779999999998754
No 176
>PLN02167 UDP-glycosyltransferase family protein
Probab=86.74 E-value=11 Score=39.85 Aligned_cols=71 Identities=14% Similarity=0.076 Sum_probs=47.6
Q ss_pred CCCChHHHHhhcC--eeEecCCCCCCchHHHHHHHcCCeEEeeCCCC----cc--ccccCCcEEee-----------CCH
Q 010098 291 GRDHADPIFHDYK--VFLNPSTTDVVCTATAEALAMGKIVVCANHPS----ND--FFKQFPNCRTY-----------DGR 351 (518)
Q Consensus 291 ~~~~~~~l~~~ad--v~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~----~e--~i~~~~~g~~~-----------~d~ 351 (518)
+.-...++++... .||.- +--++++||+++|+|+|+-...+ +. .++.-..|+.. -+.
T Consensus 346 ~w~PQ~~iL~h~~vg~fvtH----~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~ 421 (475)
T PLN02167 346 GWAPQVEILAHKAIGGFVSH----CGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKA 421 (475)
T ss_pred ccCCHHHHhcCcccCeEEee----CCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccH
Confidence 4456667888755 56622 33458999999999999987654 21 23333445432 167
Q ss_pred HHHHHHHHHHHhCC
Q 010098 352 NGFVEATLKALAEE 365 (518)
Q Consensus 352 ~~l~~~i~~ll~~~ 365 (518)
+++++++++++.++
T Consensus 422 ~~l~~av~~~m~~~ 435 (475)
T PLN02167 422 DEIAGAVRSLMDGE 435 (475)
T ss_pred HHHHHHHHHHhcCC
Confidence 89999999999754
No 177
>PLN02554 UDP-glycosyltransferase family protein
Probab=86.51 E-value=7.3 Score=41.12 Aligned_cols=69 Identities=7% Similarity=0.023 Sum_probs=46.0
Q ss_pred CCCChHHHHhhcC--eeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----c-cccccCCcEEee--------------
Q 010098 291 GRDHADPIFHDYK--VFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----N-DFFKQFPNCRTY-------------- 348 (518)
Q Consensus 291 ~~~~~~~l~~~ad--v~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~-e~i~~~~~g~~~-------------- 348 (518)
+.-...++++... +|| + -+--++++||+.+|+|+|+-...+ . ..++.-..|...
T Consensus 348 ~W~PQ~~iL~H~~v~~Fv--t--H~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~ 423 (481)
T PLN02554 348 GWAPQVAVLAKPAIGGFV--T--HCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEME 423 (481)
T ss_pred eeCCHHHHhCCcccCccc--c--cCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccC
Confidence 3445667885444 455 2 334568999999999999987754 2 223333444432
Q ss_pred C-CHHHHHHHHHHHHh
Q 010098 349 D-GRNGFVEATLKALA 363 (518)
Q Consensus 349 ~-d~~~l~~~i~~ll~ 363 (518)
. +.+++.++|++++.
T Consensus 424 ~~~~e~l~~av~~vm~ 439 (481)
T PLN02554 424 TVTAEEIERGIRCLME 439 (481)
T ss_pred eEcHHHHHHHHHHHhc
Confidence 1 67899999999986
No 178
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=84.91 E-value=12 Score=36.98 Aligned_cols=94 Identities=16% Similarity=0.208 Sum_probs=55.4
Q ss_pred EEEEeecccCCH--HHHHHHHHHHHHhcCCcEEEEEeCCC-ChHHHHHHHHHcCCeEEEeCC--CCChHHHHhhcCeeEe
Q 010098 233 YYIGRMVWSKGY--EELLGLLNIYHKELAGLEMDLYGNGE-DFDQIQRAAKKLKLVVRVYPG--RDHADPIFHDYKVFLN 307 (518)
Q Consensus 233 l~vGr~~~~Kg~--~~ll~a~~~l~~~~~~~~l~ivG~g~-~~~~l~~~~~~~~l~v~~~~~--~~~~~~l~~~adv~v~ 307 (518)
+..|.-...|.+ +...+.+..+.++ +.++++.|+++ +.+..+++.+... .+.+.+. ..+...+++.||++|.
T Consensus 183 ~~~~~s~~~k~Wp~e~~a~li~~l~~~--~~~ivl~~G~~~e~~~~~~i~~~~~-~~~l~g~~sL~elaali~~a~l~I~ 259 (322)
T PRK10964 183 FLHATTRDDKHWPEAHWRELIGLLAPS--GLRIKLPWGAEHEEQRAKRLAEGFP-YVEVLPKLSLEQVARVLAGAKAVVS 259 (322)
T ss_pred EEeCCCcccccCCHHHHHHHHHHHHHC--CCeEEEeCCCHHHHHHHHHHHccCC-cceecCCCCHHHHHHHHHhCCEEEe
Confidence 344443345554 4677777777544 57777763344 4444444443222 2334442 3344488889999997
Q ss_pred cCCCCCCchHHHHHHHcCCeEEeeCCC
Q 010098 308 PSTTDVVCTATAEALAMGKIVVCANHP 334 (518)
Q Consensus 308 pS~~E~~~~~~lEAma~G~PVV~t~~g 334 (518)
... | .+==|.|+|+|+|+-=.+
T Consensus 260 nDS----G-p~HlA~A~g~p~valfGp 281 (322)
T PRK10964 260 VDT----G-LSHLTAALDRPNITLYGP 281 (322)
T ss_pred cCC----c-HHHHHHHhCCCEEEEECC
Confidence 653 2 344488999999987444
No 179
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=84.51 E-value=15 Score=38.67 Aligned_cols=68 Identities=10% Similarity=0.135 Sum_probs=45.0
Q ss_pred CCChHHHHhh--cCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----ccccc-cCCcEEee-------CCHHHHHH
Q 010098 292 RDHADPIFHD--YKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFK-QFPNCRTY-------DGRNGFVE 356 (518)
Q Consensus 292 ~~~~~~l~~~--adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~-~~~~g~~~-------~d~~~l~~ 356 (518)
.-...+++.. +++|| +-+--++++||+++|+|+|+-...+ ...+. .-..|... -+.+++.+
T Consensus 350 w~PQ~~vL~h~~v~~fv----tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~ 425 (477)
T PLN02863 350 WAPQVAILSHRAVGAFL----THCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELAR 425 (477)
T ss_pred CCCHHHHhcCCCcCeEE----ecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHH
Confidence 3445678886 45666 2344568999999999999987653 23322 22444433 16788999
Q ss_pred HHHHHHh
Q 010098 357 ATLKALA 363 (518)
Q Consensus 357 ~i~~ll~ 363 (518)
++.+++.
T Consensus 426 ~v~~~m~ 432 (477)
T PLN02863 426 VFMESVS 432 (477)
T ss_pred HHHHHhh
Confidence 9998874
No 180
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=84.16 E-value=17 Score=37.98 Aligned_cols=74 Identities=12% Similarity=0.034 Sum_probs=49.0
Q ss_pred CCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----ccccccC-CcEEee-------CCHHHHHHH
Q 010098 291 GRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQF-PNCRTY-------DGRNGFVEA 357 (518)
Q Consensus 291 ~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~~-~~g~~~-------~d~~~l~~~ 357 (518)
+.-...++++..++-.+-++ +--++++||+.+|+|+|+-...+ ...+.+. ..|+-. -+.+++.++
T Consensus 333 ~W~PQ~~iL~h~~vg~fvtH--~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~a 410 (455)
T PLN02152 333 SWCSQIEVLRHRAVGCFVTH--CGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRC 410 (455)
T ss_pred eeCCHHHHhCCcccceEEee--CCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHH
Confidence 34456678888886444443 34568999999999999987643 2333331 123321 167899999
Q ss_pred HHHHHhCCC
Q 010098 358 TLKALAEEP 366 (518)
Q Consensus 358 i~~ll~~~~ 366 (518)
+.++++++.
T Consensus 411 v~~vm~~~~ 419 (455)
T PLN02152 411 LEAVMEEKS 419 (455)
T ss_pred HHHHHhhhH
Confidence 999997543
No 181
>PLN02207 UDP-glycosyltransferase
Probab=83.68 E-value=21 Score=37.44 Aligned_cols=71 Identities=14% Similarity=-0.033 Sum_probs=46.7
Q ss_pred CCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----cccccc-CCcEEee-----------CCHHH
Q 010098 291 GRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQ-FPNCRTY-----------DGRNG 353 (518)
Q Consensus 291 ~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~-~~~g~~~-----------~d~~~ 353 (518)
+.-...++++...+-.+-++ +--++++||+++|+|+|+-...+ ...+.+ -..|+-+ -+.++
T Consensus 338 ~W~PQ~~IL~H~~vg~FvTH--~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~ 415 (468)
T PLN02207 338 GWSPQVEILAHKAVGGFVSH--CGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANE 415 (468)
T ss_pred EeCCHHHHhcccccceeeec--CccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHH
Confidence 44556678887766333332 33467899999999999987754 232222 3444411 16789
Q ss_pred HHHHHHHHHh
Q 010098 354 FVEATLKALA 363 (518)
Q Consensus 354 l~~~i~~ll~ 363 (518)
+.++|++++.
T Consensus 416 i~~av~~vm~ 425 (468)
T PLN02207 416 IETAIRCVMN 425 (468)
T ss_pred HHHHHHHHHh
Confidence 9999999996
No 182
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=81.59 E-value=51 Score=31.63 Aligned_cols=289 Identities=19% Similarity=0.201 Sum_probs=125.3
Q ss_pred cccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCCCCcccccCcccccc
Q 010098 20 TGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTSTFDTRFYPGKFAAD 99 (518)
Q Consensus 20 ~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (518)
+|+..+..++-++..+.| |+++++.. ++. .|.+++. +-...+.++.+...-
T Consensus 1 CGVTr~a~e~~~wf~KNg-~~~~i~~a-----~e~-------sftR~ds-------------H~~~~~si~k~~~~e--- 51 (355)
T PF11440_consen 1 CGVTRNALEMRDWFDKNG-VEFTIVSA-----DEK-------SFTRPDS-------------HDSKSFSIPKYLAKE--- 51 (355)
T ss_dssp SHHHHHHHHHHHHHHHTT--EEEEEEE-----TSS---------TTTTS-------------SS-TTTEEEE-TTTH---
T ss_pred CCccccHHHHHHHHHhcC-CeeEEEEe-----ccc-------ccCCccc-------------cccceeeeehhhHHH---
Confidence 466666677778888888 99999977 111 1122121 111223333322100
Q ss_pred cccccchhhHHhhcCCCCCcEEEEcCCchh-------hhhhchHHHHhhcC---CEEEEEeCChhhhhhhhcchHHHHHH
Q 010098 100 KKSILAVGDITEIIPDEEADIAVLEEPEHL-------TWFHHGKRWKAKFR---FVVGIVHTNYLEYVKREKNDRLQAFL 169 (518)
Q Consensus 100 ~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~-------~~~~~~~~~~~~~~---~~v~~~h~~~~~~~~~~~~~~~~~~~ 169 (518)
...+.+.+. ++|++++.+.... +.+ ..+.++.. .+|...|+...-...+ +..
T Consensus 52 ------~de~v~~vN--~yDI~m~nSvPa~~vqE~~iNnY---~kii~~Ik~~ik~V~~~Hdh~~lsI~r--n~~----- 113 (355)
T PF11440_consen 52 ------YDETVKKVN--DYDIVMFNSVPATKVQEAIINNY---EKIIKKIKPSIKVVGFMHDHNKLSIDR--NPY----- 113 (355)
T ss_dssp ------HHHHHHHHT--SSSEEEEEE--BTTS-HHHHHHH---HHHHHCS-TTSEEEEEE---SHHHHTT--BSS-----
T ss_pred ------HHHHHHHhh--ccCEEEEecccCchHHHHHHHHH---HHHHHhccccceeEEEeeccceeeccc--ccc-----
Confidence 112333344 5999988764332 222 23444444 3577888653222211 111
Q ss_pred HHHHHHHHhhhhccEEEEeChhh---h----ccCCCceeccc---ccCC--CCcCcchhhHHHhhcCCCCcccEE---EE
Q 010098 170 LEFVNSWLARVHCHKVIRLSAAT---Q----EYPNSIVCNVH---GVNP--KFLEIGEKKMEQQQNGNKAFTKGA---YY 234 (518)
Q Consensus 170 ~~~~~~~~~~~~ad~vi~~S~~~---~----~~~~~~~~~~~---GVd~--~~~~~~~~~~~~~~~~~~~~~~~i---l~ 234 (518)
+...+.+ ||.|++.|... + ++......... -+.. ++-+|.+-..-+.....+...+.. +|
T Consensus 114 ---le~~m~~--~DvIfshs~~g~f~kv~m~~l~Ps~~~l~~~i~~~p~v~nfqpp~~i~~~Rstywkd~se~nmnv~~y 188 (355)
T PF11440_consen 114 ---LEGTMNE--MDVIFSHSDNGWFSKVLMKELLPSKVSLFDRIKKFPMVFNFQPPMDINKYRSTYWKDVSEKNMNVNRY 188 (355)
T ss_dssp ---HHHHHHH---SEEEES-TTSHHHHTHHHHHS-SS--SSS-------EEE----B-HHHHHHHH---GGGSEEEEEEE
T ss_pred ---HHHHHHh--hcEEEeccccchHHHHHHHhhccccCchhhhhhhcceeeecCCcccHHHHHHHHhhhhHhhhccccee
Confidence 2333344 69999998332 1 22221111111 0111 111122211222233333323444 69
Q ss_pred EEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCe-------------------EEEeCCCCCh
Q 010098 235 IGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV-------------------VRVYPGRDHA 295 (518)
Q Consensus 235 vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~-------------------v~~~~~~~~~ 295 (518)
+||..-.||+..+++.-++..+. ++++-++-|-....+.+ -+.+.+.. +.+++++-..
T Consensus 189 igR~Tt~kG~~~mfD~h~~~lK~-~~~~t~~~GierS~A~~--~i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~ 265 (355)
T PF11440_consen 189 IGRQTTWKGPRRMFDLHEKILKP-AGFKTIMEGIERSPAKI--SIKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRS 265 (355)
T ss_dssp E--SSGGG-HHHHHHHHHHTTTT-TT-EEEEE---SSTHHH--HHHHTT--EEEE-CTGGGG---SSS--EEEESS--HH
T ss_pred eeeeeeecCcHHHhhhHHHhcCC-cchhHHhhhhhcCCcee--eeecCCcccccCccccccCcccCCCCcceecchhhhH
Confidence 99999999999999998886554 67888887753332221 12233322 4455555443
Q ss_pred H--HHHhhcCeeEecC------CCCCCchHHHHHHHcCC-eEEeeCCCC--------ccccccCCcEEee-C--CHHHHH
Q 010098 296 D--PIFHDYKVFLNPS------TTDVVCTATAEALAMGK-IVVCANHPS--------NDFFKQFPNCRTY-D--GRNGFV 355 (518)
Q Consensus 296 ~--~l~~~adv~v~pS------~~E~~~~~~lEAma~G~-PVV~t~~g~--------~e~i~~~~~g~~~-~--d~~~l~ 355 (518)
+ +.++.+-..+.-+ ..+..-.+-+|..|||. ||.-...|. ..++. -..|.++ | |-++-.
T Consensus 266 E~~~~Maks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~~GEN~r~~~D~~~~~~-~~~~~I~~De~dle~T~ 344 (355)
T PF11440_consen 266 EGLERMAKSLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKSWGENNRFTLDGTRYID-HPYSAIYFDENDLESTV 344 (355)
T ss_dssp HHHHHHHTEEEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHHHHHHSB-TTTSSBGGS-S--S-EEE-TTSHHHHH
T ss_pred HHHHHHhhccceeecHHHHHHHHHhhhhhheeeeeeeceeeeeeccccccceeeecCceeec-cCcceeEeccchHHHHH
Confidence 3 4444443333322 23447788999999996 555444442 22222 2344443 2 777777
Q ss_pred HHHHHHHhC
Q 010098 356 EATLKALAE 364 (518)
Q Consensus 356 ~~i~~ll~~ 364 (518)
+.|.++.++
T Consensus 345 ekl~E~a~~ 353 (355)
T PF11440_consen 345 EKLIEVANN 353 (355)
T ss_dssp HHHHHHHT-
T ss_pred HHHHHHhcc
Confidence 777776654
No 183
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=80.86 E-value=2.1 Score=38.02 Aligned_cols=70 Identities=14% Similarity=0.215 Sum_probs=44.9
Q ss_pred hhhHHhhcCCCCCcEEEEcCCchhhh-hhchHHHHhh--c-CCEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhh
Q 010098 106 VGDITEIIPDEEADIAVLEEPEHLTW-FHHGKRWKAK--F-RFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVH 181 (518)
Q Consensus 106 ~~~l~~~i~~~~~Dvi~~~~~~~~~~-~~~~~~~~~~--~-~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (518)
.+.+.++|++.+||+|++..|..... + ..+.++ . .+.+.++-|++.... ..|+.. .
T Consensus 78 ~~~l~~~l~~~~PD~IIsThp~~~~~~l---~~lk~~~~~~~~p~~tvvTD~~~~H----------------~~W~~~-~ 137 (169)
T PF06925_consen 78 ARRLIRLLREFQPDLIISTHPFPAQVPL---SRLKRRGRLPNIPVVTVVTDFDTVH----------------PFWIHP-G 137 (169)
T ss_pred HHHHHHHHhhcCCCEEEECCcchhhhHH---HHHHHhhcccCCcEEEEEcCCCCCC----------------cCeecC-C
Confidence 45688889999999999999986644 3 223222 2 234456777763101 112222 2
Q ss_pred ccEEEEeChhhhcc
Q 010098 182 CHKVIRLSAATQEY 195 (518)
Q Consensus 182 ad~vi~~S~~~~~~ 195 (518)
+|..++.|+..++.
T Consensus 138 ~D~y~Vase~~~~~ 151 (169)
T PF06925_consen 138 VDRYFVASEEVKEE 151 (169)
T ss_pred CCEEEECCHHHHHH
Confidence 79999999888773
No 184
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=80.66 E-value=6.9 Score=39.28 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=60.2
Q ss_pred ccEEEEEEee-cccCCH--HHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCe----EEEeCCC---CChHHH
Q 010098 229 TKGAYYIGRM-VWSKGY--EELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV----VRVYPGR---DHADPI 298 (518)
Q Consensus 229 ~~~il~vGr~-~~~Kg~--~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~----v~~~~~~---~~~~~l 298 (518)
..+++..|.- .+.|.+ +.+.+.+..+.+. ++++++.|+..+.+..++..+..+.. +..+.+. .+...+
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~--~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~al 258 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLIDE--GYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVIL 258 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHHHC--CCeEEEEeCHHhHHHHHHHHHhcccccccceeeccCCCCHHHHHHH
Confidence 3455566653 355654 4566666666533 68899999766666566655544321 1222233 344488
Q ss_pred HhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCC
Q 010098 299 FHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP 334 (518)
Q Consensus 299 ~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g 334 (518)
++.||++|.... - .+==|.|.|+|+|+--.+
T Consensus 259 i~~a~l~I~nDT---G--p~HlAaA~g~P~valfGp 289 (348)
T PRK10916 259 IAACKAIVTNDS---G--LMHVAAALNRPLVALYGP 289 (348)
T ss_pred HHhCCEEEecCC---h--HHHHHHHhCCCEEEEECC
Confidence 999999996643 2 233488999999976433
No 185
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=76.63 E-value=2.9 Score=32.35 Aligned_cols=46 Identities=15% Similarity=0.025 Sum_probs=32.1
Q ss_pred hhHHhhcCCCCCcEEEEcCCchhhhhhchHHH-HhhcC-CEEEEEeCChh
Q 010098 107 GDITEIIPDEEADIAVLEEPEHLTWFHHGKRW-KAKFR-FVVGIVHTNYL 154 (518)
Q Consensus 107 ~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~-~~~~~-~~v~~~h~~~~ 154 (518)
+-++.++.+++.||||.|...+. +.+.+.+ ++-.+ +.|+|-|+.+.
T Consensus 40 pl~R~IlirE~I~IVHgH~a~S~--l~hE~i~hA~~mGlktVfTDHSLfg 87 (90)
T PF08288_consen 40 PLLRNILIRERIDIVHGHQAFST--LCHEAILHARTMGLKTVFTDHSLFG 87 (90)
T ss_pred HHHHHHHHHcCeeEEEeehhhhH--HHHHHHHHHHhCCCcEEeecccccc
Confidence 33788888999999999987554 2223333 44455 89999997653
No 186
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=76.04 E-value=17 Score=31.40 Aligned_cols=93 Identities=15% Similarity=0.166 Sum_probs=60.0
Q ss_pred EEEEEEeecccCCHHHHHHHH------HHHHHhcCCcEEEE-EeCCCC--hHHHHHHHHHcCCeEEEeCCCCChHHHHhh
Q 010098 231 GAYYIGRMVWSKGYEELLGLL------NIYHKELAGLEMDL-YGNGED--FDQIQRAAKKLKLVVRVYPGRDHADPIFHD 301 (518)
Q Consensus 231 ~il~vGr~~~~Kg~~~ll~a~------~~l~~~~~~~~l~i-vG~g~~--~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~ 301 (518)
.++.+|.-. ++.||.++ ..+.+.. =.+|+| +|.|.. .+......+..++.+..+...+.+.+.++.
T Consensus 6 vFVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~G-~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~ 80 (170)
T KOG3349|consen 6 VFVTVGTTS----FDDLISCVLSEEFLQELQKRG-FTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRS 80 (170)
T ss_pred EEEEecccc----HHHHHHHHcCHHHHHHHHHcC-ccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhh
Confidence 445666532 77777654 3333332 245555 566622 233333335667777788888899999999
Q ss_pred cCeeEecCCCCCCchHHHHHHHcCCeEEeeC
Q 010098 302 YKVFLNPSTTDVVCTATAEALAMGKIVVCAN 332 (518)
Q Consensus 302 adv~v~pS~~E~~~~~~lEAma~G~PVV~t~ 332 (518)
||+.|.-. -.-+++|.+..|+|.|+--
T Consensus 81 AdlVIsHA----GaGS~letL~l~KPlivVv 107 (170)
T KOG3349|consen 81 ADLVISHA----GAGSCLETLRLGKPLIVVV 107 (170)
T ss_pred ccEEEecC----CcchHHHHHHcCCCEEEEe
Confidence 99988432 3457999999999977653
No 187
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=74.59 E-value=55 Score=33.48 Aligned_cols=138 Identities=9% Similarity=0.021 Sum_probs=81.6
Q ss_pred cCCCCcccEEEEEEeecccC---C---HHHHHHHHHHHHHhc-CCcEEEEEeCCCCh-HHHHHHHHHcCCeEEEeCCCCC
Q 010098 223 NGNKAFTKGAYYIGRMVWSK---G---YEELLGLLNIYHKEL-AGLEMDLYGNGEDF-DQIQRAAKKLKLVVRVYPGRDH 294 (518)
Q Consensus 223 ~~~~~~~~~il~vGr~~~~K---g---~~~ll~a~~~l~~~~-~~~~l~ivG~g~~~-~~l~~~~~~~~l~v~~~~~~~~ 294 (518)
...+.+.++|+|.-...... + ....++..+...... .+..+++-= .+.. +.+... ....-.+...-...+
T Consensus 202 ~~~~~~k~vIlyaPTfr~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~k~-Hp~is~~~~~~-~~~~~~~~~vs~~~d 279 (388)
T COG1887 202 LPLPQDKKVILYAPTFRDNDVLIGTQFFNLDIDIEKLKEKLGENEYVIIVKP-HPLISDKIDKR-YALDDFVLDVSDNAD 279 (388)
T ss_pred cCCcccCceEEecCCccCCccccchhhhhhhhhHHHHHHhhccCCeEEEEec-Chhhhhhhhhh-hhccceeEecccchh
Confidence 44455688999888776654 2 333444333333333 244444433 3322 222111 111212232334678
Q ss_pred hHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC------cccc---ccCCcEEeeCCHHHHHHHHHHHHhCC
Q 010098 295 ADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS------NDFF---KQFPNCRTYDGRNGFVEATLKALAEE 365 (518)
Q Consensus 295 ~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~------~e~i---~~~~~g~~~~d~~~l~~~i~~ll~~~ 365 (518)
+.+++..+|++|. -++.+..|+|..-+|||-.-... .++. +...-|-++.+.+++.++|.....++
T Consensus 280 i~dll~~sDiLIT-----DySSv~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~~~~~li~ai~~~~~~~ 354 (388)
T COG1887 280 INDLLLVSDILIT-----DYSSVIFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVETQEELIDAIKPYDEDG 354 (388)
T ss_pred HHHHHhhhCEEEe-----echHHHHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCccccccHHHHHHHHHhhhccc
Confidence 8899999999994 35778999999999999884332 1222 22345556678899999999988765
Q ss_pred CC
Q 010098 366 PA 367 (518)
Q Consensus 366 ~~ 367 (518)
+.
T Consensus 355 ~~ 356 (388)
T COG1887 355 NY 356 (388)
T ss_pred ch
Confidence 54
No 188
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=74.46 E-value=20 Score=29.25 Aligned_cols=72 Identities=14% Similarity=0.169 Sum_probs=51.3
Q ss_pred HhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 256 KELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 256 ~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
...++++++-+-+ ++.+..+..+++++.. .+.+.++++. ..|+.+..+..+.-.-.+.+++..|++|++-.-
T Consensus 21 ~~~~~~~v~~v~d-~~~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP 94 (120)
T PF01408_consen 21 RSSPDFEVVAVCD-PDPERAEAFAEKYGIP-----VYTDLEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEKP 94 (120)
T ss_dssp HTTTTEEEEEEEC-SSHHHHHHHHHHTTSE-----EESSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEESS
T ss_pred hcCCCcEEEEEEe-CCHHHHHHHHHHhccc-----chhHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEcC
Confidence 3445676664433 4567777778888876 3466888888 568766666555556678999999999998865
No 189
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=73.51 E-value=13 Score=35.90 Aligned_cols=76 Identities=13% Similarity=0.107 Sum_probs=47.1
Q ss_pred CCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhh-----hhhhcc---hHHHHHHHHHHHHHHhhh--hccEE
Q 010098 117 EADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEY-----VKREKN---DRLQAFLLEFVNSWLARV--HCHKV 185 (518)
Q Consensus 117 ~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~~~--~ad~v 185 (518)
+.|++|+.+....+++ |...+.+.+ |.+.|-|..|..- .+.... ..++..+.+++.....-. +||.|
T Consensus 172 ~advyHsvstGyAgl~--g~~~k~~~g~P~lLTEHGIY~RER~~ei~~a~w~~~~~~~r~~wi~~f~~l~~~~Y~~Ad~I 249 (268)
T PF11997_consen 172 KADVYHSVSTGYAGLL--GALAKYRYGRPFLLTEHGIYTREREIEILQADWIWESPYVRDLWIRFFESLSRLAYRAADRI 249 (268)
T ss_pred CCCEEecCCccHHHHH--HHHHHHHhCCCEEEecCCccHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhCee
Confidence 4799999998877777 555666656 9999999885321 111111 234444444443332222 49999
Q ss_pred EEeChhhhc
Q 010098 186 IRLSAATQE 194 (518)
Q Consensus 186 i~~S~~~~~ 194 (518)
++.++..++
T Consensus 250 ~~l~~~n~~ 258 (268)
T PF11997_consen 250 TPLYEYNRE 258 (268)
T ss_pred cccchhhHH
Confidence 999976554
No 190
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=73.07 E-value=35 Score=34.07 Aligned_cols=99 Identities=16% Similarity=0.233 Sum_probs=58.8
Q ss_pred ccEEEEEEeecccCCH--HHHHHHHHHHHHhcCCcEEEEEeCCCC--hHHHHHHHHHcCCe-EEEeCCC---CChHHHHh
Q 010098 229 TKGAYYIGRMVWSKGY--EELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLV-VRVYPGR---DHADPIFH 300 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~--~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~~~l~-v~~~~~~---~~~~~l~~ 300 (518)
..+++..|.-.+.|.+ +...+.+..+.++ +.+++++|+..+ .+..++..+..+.. +.-+.+. .+...+++
T Consensus 182 ~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~--~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~ 259 (344)
T TIGR02201 182 NYIVIQPTSRWFFKCWDNDRFSALIDALHAR--GYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALID 259 (344)
T ss_pred CEEEEeCCCCccccCCCHHHHHHHHHHHHhC--CCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHH
Confidence 3455666654455544 5666677666543 578899986432 22344444433322 2223333 34558899
Q ss_pred hcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCC
Q 010098 301 DYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP 334 (518)
Q Consensus 301 ~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g 334 (518)
.||++|... +. .+==|.|+|+|+|+--.+
T Consensus 260 ~a~l~Vs~D---SG--p~HlAaA~g~p~v~Lfgp 288 (344)
T TIGR02201 260 HARLFIGVD---SV--PMHMAAALGTPLVALFGP 288 (344)
T ss_pred hCCEEEecC---CH--HHHHHHHcCCCEEEEECC
Confidence 999999764 22 344488999999987443
No 191
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=72.17 E-value=9.5 Score=40.15 Aligned_cols=73 Identities=14% Similarity=0.046 Sum_probs=49.7
Q ss_pred CCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----cccc-ccCCcEEeeC------CHHHHHHHH
Q 010098 291 GRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFF-KQFPNCRTYD------GRNGFVEAT 358 (518)
Q Consensus 291 ~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i-~~~~~g~~~~------d~~~l~~~i 358 (518)
+.-...++++..++-.+-+ -+--++++||+.+|+|+|+-...+ ...+ +.-..|...+ +.+++.++|
T Consensus 344 ~W~PQ~~iL~h~~vg~Fit--H~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~l~~av 421 (481)
T PLN02992 344 SWAPQAEILAHQAVGGFLT--HCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKIEALV 421 (481)
T ss_pred ecCCHHHHhCCcccCeeEe--cCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHHHHHHH
Confidence 3345667888887633323 344678999999999999997754 3333 2334454431 778999999
Q ss_pred HHHHhCC
Q 010098 359 LKALAEE 365 (518)
Q Consensus 359 ~~ll~~~ 365 (518)
.+++.++
T Consensus 422 ~~vm~~~ 428 (481)
T PLN02992 422 RKVMVEE 428 (481)
T ss_pred HHHhcCC
Confidence 9999765
No 192
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=71.58 E-value=20 Score=32.57 Aligned_cols=96 Identities=14% Similarity=0.218 Sum_probs=58.2
Q ss_pred EEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC--hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcC--ee
Q 010098 232 AYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYK--VF 305 (518)
Q Consensus 232 il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~ad--v~ 305 (518)
++-.|++ |...+++.+..=+...+++.+.++|+|.. .+.++.... +.+. ..| ++
T Consensus 7 ~ik~Gni----Gts~v~dlllDErAdRedi~vrVvgsgaKM~Pe~veaav~----------------~~~e~~~pDfvi~ 66 (277)
T COG1927 7 FIKCGNI----GTSPVVDLLLDERADREDIEVRVVGSGAKMDPECVEAAVT----------------EMLEEFNPDFVIY 66 (277)
T ss_pred EEEeccc----chHHHHHHHHHhhcccCCceEEEeccccccChHHHHHHHH----------------HHHHhcCCCEEEE
Confidence 4455665 55566666544445677899999999765 333333211 1222 223 45
Q ss_pred EecCCCCCCchHHHHHHH-cCCeEEe-eCCCC---ccccccCCcEEe
Q 010098 306 LNPSTTDVVCTATAEALA-MGKIVVC-ANHPS---NDFFKQFPNCRT 347 (518)
Q Consensus 306 v~pS~~E~~~~~~lEAma-~G~PVV~-t~~g~---~e~i~~~~~g~~ 347 (518)
+.|.-.-+-|.+.-|.++ +|.|+|. +|.++ .+.+++..-|++
T Consensus 67 isPNpaaPGP~kARE~l~~s~~PaiiigDaPg~~vkdeleeqGlGYI 113 (277)
T COG1927 67 ISPNPAAPGPKKAREILSDSDVPAIIIGDAPGLKVKDELEEQGLGYI 113 (277)
T ss_pred eCCCCCCCCchHHHHHHhhcCCCEEEecCCccchhHHHHHhcCCeEE
Confidence 556556667888888887 6888554 46666 566666666666
No 193
>PLN02534 UDP-glycosyltransferase
Probab=71.39 E-value=1e+02 Score=32.60 Aligned_cols=70 Identities=9% Similarity=-0.072 Sum_probs=44.9
Q ss_pred CCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----ccccc-cCCcEEe-----------------e
Q 010098 292 RDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFK-QFPNCRT-----------------Y 348 (518)
Q Consensus 292 ~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~-~~~~g~~-----------------~ 348 (518)
.-...+++...++-.+- +-+-.++++||+++|+|+|+-...+ ...+. .-..|+- .
T Consensus 351 w~pq~~iL~h~~v~~fv--tH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~ 428 (491)
T PLN02534 351 WAPQVLILSHPAIGGFL--THCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVL 428 (491)
T ss_pred CCCHHHHhcCCccceEE--ecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCc
Confidence 33446788888873222 3345678999999999999987753 12221 1111111 1
Q ss_pred CCHHHHHHHHHHHHh
Q 010098 349 DGRNGFVEATLKALA 363 (518)
Q Consensus 349 ~d~~~l~~~i~~ll~ 363 (518)
-+.+++++++++++.
T Consensus 429 v~~eev~~~v~~~m~ 443 (491)
T PLN02534 429 VKKDEVEKAVKTLMD 443 (491)
T ss_pred cCHHHHHHHHHHHhc
Confidence 257899999999986
No 194
>PRK05380 pyrG CTP synthetase; Validated
Probab=70.41 E-value=1.4e+02 Score=31.72 Aligned_cols=93 Identities=11% Similarity=0.027 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEeCCCC-h-------HHHHHHHHHcCCeEE--EeCC--CC--ChHHHHhhcCeeEec
Q 010098 243 GYEELLGLLNIYHKELAGLEMDLYGNGED-F-------DQIQRAAKKLKLVVR--VYPG--RD--HADPIFHDYKVFLNP 308 (518)
Q Consensus 243 g~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~-------~~l~~~~~~~~l~v~--~~~~--~~--~~~~l~~~adv~v~p 308 (518)
++...-+.+.++......+++-++|.-.+ . +.++......+..+. +... .+ +..+.+..+|-+|+|
T Consensus 271 ~~~~w~~~~~~~~~~~~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlp 350 (533)
T PRK05380 271 DLSEWEELVERLKNPKGEVTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVP 350 (533)
T ss_pred CHHHHHHHHHHHhCCCCceEEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEec
Confidence 34433334444433233589999998433 1 344444444454433 3332 11 245788999988887
Q ss_pred CC-----CCCCchHHHHHHHcCCeEEeeCCCC
Q 010098 309 ST-----TDVVCTATAEALAMGKIVVCANHPS 335 (518)
Q Consensus 309 S~-----~E~~~~~~lEAma~G~PVV~t~~g~ 335 (518)
.- .++.-..+-+|...|+|++..-.|.
T Consensus 351 GGfG~~~~~g~i~~i~~a~e~~iPiLGIClGm 382 (533)
T PRK05380 351 GGFGERGIEGKILAIRYARENNIPFLGICLGM 382 (533)
T ss_pred CCCCccccccHHHHHHHHHHCCCcEEEEchHH
Confidence 52 2333334566778899999997775
No 195
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=70.32 E-value=6.1 Score=38.61 Aligned_cols=55 Identities=18% Similarity=0.105 Sum_probs=39.5
Q ss_pred ChHHHHhhcCeeEecCCCCCCchHHHHHHHcC-CeEEeeCCCC---ccccccCCcEEee
Q 010098 294 HADPIFHDYKVFLNPSTTDVVCTATAEALAMG-KIVVCANHPS---NDFFKQFPNCRTY 348 (518)
Q Consensus 294 ~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G-~PVV~t~~g~---~e~i~~~~~g~~~ 348 (518)
+..+.|+.++.++.|.-...+..-+.|||++| +|||.++.-- .+.+.=....+.+
T Consensus 229 ~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v 287 (302)
T PF03016_consen 229 EYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRV 287 (302)
T ss_pred HHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEE
Confidence 46688999998888876656888999999999 5788776432 6666434444444
No 196
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=69.97 E-value=1e+02 Score=31.54 Aligned_cols=110 Identities=14% Similarity=0.077 Sum_probs=66.9
Q ss_pred ccCCHHHHHHHHHHHHHh------cCCcEEEEEeCC---CChHHHHHHHHHcCCeEEE-eCCCCChHHHHhh--cCeeEe
Q 010098 240 WSKGYEELLGLLNIYHKE------LAGLEMDLYGNG---EDFDQIQRAAKKLKLVVRV-YPGRDHADPIFHD--YKVFLN 307 (518)
Q Consensus 240 ~~Kg~~~ll~a~~~l~~~------~~~~~l~ivG~g---~~~~~l~~~~~~~~l~v~~-~~~~~~~~~l~~~--adv~v~ 307 (518)
...|++..++++...... .++-.+.|+|.- .+..+++++.++.|+++.. +.+....+++-+. |.+-|.
T Consensus 134 ~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~~~~A~~niv 213 (406)
T cd01967 134 QSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRVNATFTGDGTVDELRRAHRAKLNLV 213 (406)
T ss_pred ccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhhCccCCEEEE
Confidence 455788777776544321 123567777762 2458899999999999764 5556677766654 444443
Q ss_pred cCCCCCCchHHHHHHH--cCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHh
Q 010098 308 PSTTDVVCTATAEALA--MGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALA 363 (518)
Q Consensus 308 pS~~E~~~~~~lEAma--~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~ 363 (518)
.+. .++..+.+.|. .|.|.+....-| .++.+++.+.|.+++.
T Consensus 214 ~~~--~~~~~~a~~L~~r~GiP~~~~~p~G------------~~~t~~~l~~l~~~lg 257 (406)
T cd01967 214 HCS--RSMNYLAREMEERYGIPYMEVNFYG------------FEDTSESLRKIAKFFG 257 (406)
T ss_pred ECh--HHHHHHHHHHHHhhCCCEEEecCCc------------HHHHHHHHHHHHHHhC
Confidence 322 23455555553 799998632101 1366777777777664
No 197
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=68.95 E-value=1.3e+02 Score=30.62 Aligned_cols=101 Identities=11% Similarity=0.083 Sum_probs=55.6
Q ss_pred cEEEEEeCCCChHHHHHHHHHcCCeEEEeC---CC-CChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-
Q 010098 261 LEMDLYGNGEDFDQIQRAAKKLKLVVRVYP---GR-DHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS- 335 (518)
Q Consensus 261 ~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~---~~-~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~- 335 (518)
++++-++.-++..-.+..+.......+++- .. +.....++.+|++|-.-.+ +++=||+.|+|+|+-....
T Consensus 241 i~~~~~~~s~d~~va~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~H-----saI~al~~g~p~i~i~Y~~K 315 (385)
T COG2327 241 ITLIDYGASDDLAVADAIAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMRLH-----SAIMALAFGVPAIAIAYDPK 315 (385)
T ss_pred EEeeeccccchhHHHHHHHhhcCCccceEeecchHHHHHHHHhccCceEEeehhH-----HHHHHHhcCCCeEEEeecHH
Confidence 344444443333444444444442233332 22 1223678899998865433 4677999999999987643
Q ss_pred -cccccc-CCcEEee----CCHHHHHHHHHHHHhCCC
Q 010098 336 -NDFFKQ-FPNCRTY----DGRNGFVEATLKALAEEP 366 (518)
Q Consensus 336 -~e~i~~-~~~g~~~----~d~~~l~~~i~~ll~~~~ 366 (518)
..+.++ +-.++.. .|.+.+.+...+.+.+.+
T Consensus 316 ~~~l~~~~gl~~~~~~i~~~~~~~l~~~~~e~~~~~~ 352 (385)
T COG2327 316 VRGLMQDLGLPGFAIDIDPLDAEILSAVVLERLTKLD 352 (385)
T ss_pred HHHHHHHcCCCcccccCCCCchHHHHHHHHHHHhccH
Confidence 333222 2222332 277778777777765544
No 198
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=68.14 E-value=65 Score=31.62 Aligned_cols=85 Identities=15% Similarity=0.235 Sum_probs=57.6
Q ss_pred HHHHHHhcCCcE-E-EEEeCCCC-----hHHHHHHHHHcCCeEEEeC--CCCChHH----HHhhcCeeEecCC---CCCC
Q 010098 251 LNIYHKELAGLE-M-DLYGNGED-----FDQIQRAAKKLKLVVRVYP--GRDHADP----IFHDYKVFLNPST---TDVV 314 (518)
Q Consensus 251 ~~~l~~~~~~~~-l-~ivG~g~~-----~~~l~~~~~~~~l~v~~~~--~~~~~~~----l~~~adv~v~pS~---~E~~ 314 (518)
+..++.-.|+++ + +++..++. -++++..+++.|+.+.-.. ...+++. +....|++..|.. .-++
T Consensus 149 i~lik~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~i~s~~ 228 (322)
T COG2984 149 IELIKALLPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNLIVSAI 228 (322)
T ss_pred HHHHHHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecchHHHHHH
Confidence 333344567764 3 56677664 3788888999999866433 4555553 3356688887742 2346
Q ss_pred chHHHHHHHcCCeEEeeCCCC
Q 010098 315 CTATAEALAMGKIVVCANHPS 335 (518)
Q Consensus 315 ~~~~lEAma~G~PVV~t~~g~ 335 (518)
...+.+|...++|++++|.+.
T Consensus 229 ~~l~~~a~~~kiPli~sd~~~ 249 (322)
T COG2984 229 ESLLQVANKAKIPLIASDTSS 249 (322)
T ss_pred HHHHHHHHHhCCCeecCCHHH
Confidence 667899999999999998843
No 199
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=64.07 E-value=38 Score=29.75 Aligned_cols=67 Identities=7% Similarity=-0.025 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCC-CCChHHHHhhcCeeEecC
Q 010098 242 KGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPG-RDHADPIFHDYKVFLNPS 309 (518)
Q Consensus 242 Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~-~~~~~~l~~~adv~v~pS 309 (518)
=.+.+.++++..+....-|.-.++-|++ +...+-..+++.|..+..+|. ..-..++.+.||-|+.-.
T Consensus 89 ~Dv~laIDame~~~~~~iD~~vLvSgD~-DF~~Lv~~lre~G~~V~v~g~~~~ts~~L~~acd~FI~L~ 156 (160)
T TIGR00288 89 VDVRMAVEAMELIYNPNIDAVALVTRDA-DFLPVINKAKENGKETIVIGAEPGFSTALQNSADIAIILG 156 (160)
T ss_pred ccHHHHHHHHHHhccCCCCEEEEEeccH-hHHHHHHHHHHCCCEEEEEeCCCCChHHHHHhcCeEEeCC
Confidence 3678999999887544435544555554 566666667788999998884 345558999999887543
No 200
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=63.08 E-value=12 Score=31.21 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=30.8
Q ss_pred CChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC
Q 010098 293 DHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS 335 (518)
Q Consensus 293 ~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~ 335 (518)
++.++++..+|+.|--|..+..--.+-.++.+|+|+|..-.|.
T Consensus 59 ~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGF 101 (124)
T ss_dssp S-HHHHTTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSS
T ss_pred hhHHHhcccCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCC
Confidence 6778999999999988766665566777889999999987764
No 201
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=62.27 E-value=10 Score=34.60 Aligned_cols=37 Identities=22% Similarity=0.125 Sum_probs=26.8
Q ss_pred cEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccC
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWL 48 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~ 48 (518)
|||++..+... .+..+..+++.|.+.| |+|+|++|..
T Consensus 1 M~ILlTNDDGi-----~a~Gi~aL~~~L~~~g-~~V~VvAP~~ 37 (196)
T PF01975_consen 1 MRILLTNDDGI-----DAPGIRALAKALSALG-HDVVVVAPDS 37 (196)
T ss_dssp SEEEEE-SS-T-----TSHHHHHHHHHHTTTS-SEEEEEEESS
T ss_pred CeEEEEcCCCC-----CCHHHHHHHHHHHhcC-CeEEEEeCCC
Confidence 78988887552 2445777889997766 9999999954
No 202
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=61.56 E-value=93 Score=29.13 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=28.6
Q ss_pred CChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 293 DHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 293 ~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
.+..++++.+|++|....+ ..+=|+++|+|+|+-+.
T Consensus 249 ~~~~~~~~~~~~~Is~RlH-----~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 249 DELLELISQADLVISMRLH-----GAILALSLGVPVIAISY 284 (286)
T ss_pred HHHHHHHhcCCEEEecCCH-----HHHHHHHcCCCEEEEec
Confidence 3444889999999988765 56779999999998754
No 203
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=60.91 E-value=20 Score=28.37 Aligned_cols=81 Identities=17% Similarity=0.222 Sum_probs=50.9
Q ss_pred EEEEeCCCC-----hHHHHHHHHHcCCeEEE-eCCCCChHHHHhhcCeeEecCC-CCCCchHHHHHHHcCCeEEeeCCCC
Q 010098 263 MDLYGNGED-----FDQIQRAAKKLKLVVRV-YPGRDHADPIFHDYKVFLNPST-TDVVCTATAEALAMGKIVVCANHPS 335 (518)
Q Consensus 263 l~ivG~g~~-----~~~l~~~~~~~~l~v~~-~~~~~~~~~l~~~adv~v~pS~-~E~~~~~~lEAma~G~PVV~t~~g~ 335 (518)
|..+|.|-. ...+++..+++|++..+ .-..++.......+|+++.... .+.|+.... |.+++.-..
T Consensus 5 L~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~v~~~~~~~~~aDiiv~s~~l~~~~~~~~~-----~~v~~~~~~-- 77 (93)
T COG3414 5 LAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCAVDEIKALTDGADIIVTSTKLADEFEDIPK-----GYVVITGNG-- 77 (93)
T ss_pred EEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEEecccccCCCcccEEEEehHhhhhcCcCCC-----ceEEEEccc--
Confidence 566777655 47888899999986443 2245666677888899986653 222321111 444443322
Q ss_pred ccccccCCcEEeeCCHHHHHHHHHHHHh
Q 010098 336 NDFFKQFPNCRTYDGRNGFVEATLKALA 363 (518)
Q Consensus 336 ~e~i~~~~~g~~~~d~~~l~~~i~~ll~ 363 (518)
-|.+++.++|.+.++
T Consensus 78 -------------~d~~ei~~~l~~~L~ 92 (93)
T COG3414 78 -------------MDIEEIKQKLLEILK 92 (93)
T ss_pred -------------CCHHHHHHHHHHHHh
Confidence 378888888888775
No 204
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=60.43 E-value=39 Score=29.99 Aligned_cols=87 Identities=15% Similarity=0.135 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCC-CCChHHHHhhcCeeEecCCCCCCchHHHHHHH
Q 010098 246 ELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPG-RDHADPIFHDYKVFLNPSTTDVVCTATAEALA 323 (518)
Q Consensus 246 ~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~-~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma 323 (518)
..++.++++.....+.+.+|+|.|.. ...+-....+.+..+.+... .++..+.++.||+.|..+-... +.-.|.+.
T Consensus 30 a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~~aDiVIsat~~~~--ii~~~~~~ 107 (168)
T cd01080 30 GILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKPG--LVKGDMVK 107 (168)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHHhhCCEEEEcCCCCc--eecHHHcc
Confidence 34444444433345689999999875 44355555556766655543 4567789999999998865432 22333333
Q ss_pred cCCeEEeeCCCCc
Q 010098 324 MGKIVVCANHPSN 336 (518)
Q Consensus 324 ~G~PVV~t~~g~~ 336 (518)
-| .+.-|.+.+
T Consensus 108 ~~--~viIDla~p 118 (168)
T cd01080 108 PG--AVVIDVGIN 118 (168)
T ss_pred CC--eEEEEccCC
Confidence 33 555566553
No 205
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=60.13 E-value=76 Score=29.73 Aligned_cols=59 Identities=12% Similarity=0.038 Sum_probs=35.7
Q ss_pred hcC-eeEecCCCCCCchHHHHHHHcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHH
Q 010098 301 DYK-VFLNPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKA 361 (518)
Q Consensus 301 ~ad-v~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~l 361 (518)
.+| +.+.|...+...-.+-++...|+|||..+.+ +........++-.|..++...+-+.
T Consensus 55 ~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~--~~~~~~~~~~v~~d~~~~G~~~a~~ 114 (257)
T PF13407_consen 55 GVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD--EAPDSPRAAYVGTDNYEAGKLAAEY 114 (257)
T ss_dssp TESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST--HHTTSTSSEEEEE-HHHHHHHHHHH
T ss_pred cCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc--ccccccceeeeeccHHHHHHHHHHH
Confidence 456 5556666677777888899999999999887 1222223334433555444444433
No 206
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=59.86 E-value=46 Score=23.45 Aligned_cols=62 Identities=18% Similarity=0.205 Sum_probs=41.7
Q ss_pred cEEEEEeC--CCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeC
Q 010098 261 LEMDLYGN--GEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCAN 332 (518)
Q Consensus 261 ~~l~ivG~--g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~ 332 (518)
..+.+.|. +.+.+.+++++..+|..+.-.. . ..++.+|.++.... ....+|...|+|||..+
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~--~------~~~thvI~~~~~~~--~~~~~~~~~~~~iV~~~ 65 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGKVTSSV--S------KKTTHVIVGSDAGP--KKLLKAIKLGIPIVTPE 65 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCEEeccc--c------CCceEEEECCCCCc--hHHHHHHHcCCeEecHH
Confidence 56778887 4678999999999887533211 1 45566666653222 12788999999998754
No 207
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=59.32 E-value=16 Score=30.38 Aligned_cols=40 Identities=28% Similarity=0.302 Sum_probs=32.0
Q ss_pred cEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
||++|+.+.. |+.+-.+...+.++..+.+.|+++|.|+-.
T Consensus 1 m~~~Ivvt~p-pYg~q~a~~A~~fA~all~~gh~~v~iFly 40 (126)
T COG1553 1 MKYTIVVTGP-PYGTESAFSALRFAEALLEQGHELVRLFLY 40 (126)
T ss_pred CeEEEEEecC-CCccHHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 5777777654 887777888899999999997788999855
No 208
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=58.80 E-value=1.1e+02 Score=34.07 Aligned_cols=140 Identities=12% Similarity=-0.000 Sum_probs=91.4
Q ss_pred cccEEEEEEeecccCCHHHHHHHHHHHHHhcCC----cEEEEEeCCCC--hH---HHHHHH----HHcC--------CeE
Q 010098 228 FTKGAYYIGRMVWSKGYEELLGLLNIYHKELAG----LEMDLYGNGED--FD---QIQRAA----KKLK--------LVV 286 (518)
Q Consensus 228 ~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~----~~l~ivG~g~~--~~---~l~~~~----~~~~--------l~v 286 (518)
..++++-+-++..-||...=+.++.++..++|+ +.++.+..+.. .+ +++..+ ++.+ ..+
T Consensus 275 g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~~~kVvliqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV 354 (732)
T KOG1050|consen 275 GKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEWIDKVVLIQIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPV 354 (732)
T ss_pred CCceEecccccccccCchHHHHHHHHHHHhChhhhceEEEEEEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccceE
Confidence 467788888999999999999999999888875 34444433221 11 222221 1111 012
Q ss_pred EEeC---CCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcC----CeEEeeCCCC-ccccccCCcEEeeCCHHHHHHHH
Q 010098 287 RVYP---GRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMG----KIVVCANHPS-NDFFKQFPNCRTYDGRNGFVEAT 358 (518)
Q Consensus 287 ~~~~---~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G----~PVV~t~~g~-~e~i~~~~~g~~~~d~~~l~~~i 358 (518)
+++. +..+.-+++.-+|+++..++.+|..++.+|+.+|. .+-|.+..-| .+..+++.-.+-.-|.++++..|
T Consensus 355 ~~~~~~~~~~~l~a~~~Vaev~~v~s~rdGmnl~~~e~i~~~~~~~~~lVlsef~G~~~tl~d~aivvnpw~~~~~~~~i 434 (732)
T KOG1050|consen 355 HSLLKDLPFLELLALYKVAEVCPVTSWRDGMNLVFLEYILCQENKKSVLVLSEFIGDDTTLEDAAIVVNPWDGDEFAILI 434 (732)
T ss_pred EEeeccCCHHHHhhhHHhhhheeecccccccchhhhHHHHhhcccCCceEEeeeccccccccccCEEECCcchHHHHHHH
Confidence 2222 23344478888999999999999999999999985 4455555444 55553332221122899999999
Q ss_pred HHHHhCCCC
Q 010098 359 LKALAEEPA 367 (518)
Q Consensus 359 ~~ll~~~~~ 367 (518)
..+++.++.
T Consensus 435 ~~al~~s~~ 443 (732)
T KOG1050|consen 435 SKALTMSDE 443 (732)
T ss_pred HHHhhcCHH
Confidence 999988775
No 209
>PLN03015 UDP-glucosyl transferase
Probab=57.60 E-value=76 Score=33.35 Aligned_cols=70 Identities=14% Similarity=0.027 Sum_probs=44.7
Q ss_pred CCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----cccc-ccCCcEEee--------CCHHHHHHH
Q 010098 292 RDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFF-KQFPNCRTY--------DGRNGFVEA 357 (518)
Q Consensus 292 ~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i-~~~~~g~~~--------~d~~~l~~~ 357 (518)
.-...++++...+-.+-++ +--++++||+++|+|+|+-..-+ ...+ +.-..|+-. -+.+++.++
T Consensus 342 W~PQ~~vL~h~~vg~fvtH--~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~ 419 (470)
T PLN03015 342 WAPQVEILSHRSIGGFLSH--CGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASL 419 (470)
T ss_pred cCCHHHHhccCccCeEEec--CCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHH
Confidence 3455567777665333332 33568999999999999987643 2222 222333332 166799999
Q ss_pred HHHHHh
Q 010098 358 TLKALA 363 (518)
Q Consensus 358 i~~ll~ 363 (518)
|++++.
T Consensus 420 v~~lm~ 425 (470)
T PLN03015 420 VRKIVA 425 (470)
T ss_pred HHHHHc
Confidence 999986
No 210
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=56.54 E-value=54 Score=27.68 Aligned_cols=89 Identities=15% Similarity=0.190 Sum_probs=56.4
Q ss_pred cccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecCCCCCCch
Q 010098 239 VWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCT 316 (518)
Q Consensus 239 ~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~ 316 (518)
...+|++.|.+...+++. +.+.+.+....+.+++.....+...+++.+.+...++.. .+|+.++....-.-=.
T Consensus 31 sa~~n~~~L~~q~~~f~p-----~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~~l~~~~~~~~~D~vv~Ai~G~aGL~ 105 (129)
T PF02670_consen 31 SAGSNIEKLAEQAREFKP-----KYVVIADEEAYEELKKALPSKGPGIEVLSGPEGLEELAEEPEVDIVVNAIVGFAGLK 105 (129)
T ss_dssp EESSTHHHHHHHHHHHT------SEEEESSHHHHHHHHHHHHHTTSSSEEEESHHHHHHHHTHTT-SEEEE--SSGGGHH
T ss_pred EcCCCHHHHHHHHHHhCC-----CEEEEcCHHHHHHHHHHhhhcCCCCEEEeChHHHHHHhcCCCCCEEEEeCcccchHH
Confidence 347899999999976643 356666544455566655444556777777777777776 6788887754222223
Q ss_pred HHHHHHHcCCeEEeeC
Q 010098 317 ATAEALAMGKIVVCAN 332 (518)
Q Consensus 317 ~~lEAma~G~PVV~t~ 332 (518)
+.++|+-.|+-+--.+
T Consensus 106 pt~~Ai~~gk~iaLAN 121 (129)
T PF02670_consen 106 PTLAAIKAGKDIALAN 121 (129)
T ss_dssp HHHHHHHTTSEEEE--
T ss_pred HHHHHHHCCCeEEEec
Confidence 5789999998776543
No 211
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=56.06 E-value=54 Score=29.89 Aligned_cols=97 Identities=15% Similarity=0.073 Sum_probs=55.9
Q ss_pred cCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-hHHHHHHHHHcCCe---EEEeCCCC-Ch-HHHHhhcCeeEecCCCCCC
Q 010098 241 SKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLV---VRVYPGRD-HA-DPIFHDYKVFLNPSTTDVV 314 (518)
Q Consensus 241 ~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l~---v~~~~~~~-~~-~~l~~~adv~v~pS~~E~~ 314 (518)
.|=+..|.+|+.-+..-. .-++.++|..+. ...+++.+++.|.. .++.||.- +. ..-+..=|+.+.....+ -
T Consensus 43 ~kT~~~L~~A~~~i~~i~-~~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~dp~~-~ 120 (196)
T TIGR01012 43 RKTDERLRVAAKFLVRIE-PEDILVVSARIYGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTDPRA-D 120 (196)
T ss_pred HHHHHHHHHHHHHHHHhh-CCeEEEEecCHHHHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEEEEECCcc-c
Confidence 344555555555554333 557888998654 34566666666644 34666422 11 12234445444433221 2
Q ss_pred chHHHHHHHcCCeEEee-CCCC-cccc
Q 010098 315 CTATAEALAMGKIVVCA-NHPS-NDFF 339 (518)
Q Consensus 315 ~~~~lEAma~G~PVV~t-~~g~-~e~i 339 (518)
..++.||.-+|+|+|+- |..+ +..+
T Consensus 121 ~~Av~EA~~l~IP~Iai~DTn~dp~~v 147 (196)
T TIGR01012 121 HQALKEASEVGIPIVALCDTDNPLRYV 147 (196)
T ss_pred cHHHHHHHHcCCCEEEEeeCCCCCccC
Confidence 56899999999999998 4444 5544
No 212
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=55.37 E-value=14 Score=35.70 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=29.2
Q ss_pred cEEEEEeeccCCcccc-cccchHHHHHHHHhcCCeeEEEEec
Q 010098 6 QHIAIFTTASLPWLTG-TAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G-~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|+|++++...+|+..| ++.-...+.+.|.+.. ..|..+++
T Consensus 1 ~~V~ll~EGtYPyv~GGVSsW~~~LI~glpe~~-F~v~~i~a 41 (268)
T PF11997_consen 1 MDVCLLTEGTYPYVRGGVSSWVHQLIRGLPEHE-FHVYAIGA 41 (268)
T ss_pred CeEEEEecCcCCCCCCchhHHHHHHHhcCCCce-EEEEEEeC
Confidence 6899999888898755 4444456667777765 67777766
No 213
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=54.66 E-value=13 Score=31.33 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=17.7
Q ss_pred ccch-HHHHHHHHhcCCeeEEEEec
Q 010098 23 AVNP-LFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 23 ~~~~-~~~a~~L~~~gg~~V~vi~~ 46 (518)
-+++ +.+++.|.++| |+|++.++
T Consensus 11 hv~P~lala~~L~~rG-h~V~~~~~ 34 (139)
T PF03033_consen 11 HVYPFLALARALRRRG-HEVRLATP 34 (139)
T ss_dssp HHHHHHHHHHHHHHTT--EEEEEET
T ss_pred HHHHHHHHHHHHhccC-CeEEEeec
Confidence 4444 56889999998 99998887
No 214
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=52.96 E-value=56 Score=33.15 Aligned_cols=89 Identities=16% Similarity=0.097 Sum_probs=57.9
Q ss_pred cccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhh--cCeeEecCCCCCCch
Q 010098 239 VWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPSTTDVVCT 316 (518)
Q Consensus 239 ~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~--adv~v~pS~~E~~~~ 316 (518)
...+|++.+.+...++. .+.+.+.+.....+++.... +....++.+.+...++.+. +|+.|.......--.
T Consensus 34 aa~~n~~~l~~q~~~f~-----p~~v~i~~~~~~~~l~~~l~--~~~~~v~~G~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ 106 (385)
T PRK05447 34 SAGKNVELLAEQAREFR-----PKYVVVADEEAAKELKEALA--AAGIEVLAGEEGLCELAALPEADVVVAAIVGAAGLL 106 (385)
T ss_pred EcCCCHHHHHHHHHHhC-----CCEEEEcCHHHHHHHHHhhc--cCCceEEEChhHHHHHhcCCCCCEEEEeCcCcccHH
Confidence 33678888887775432 35667776443444544332 1224566677778888874 478888766443336
Q ss_pred HHHHHHHcCCeEEeeCCC
Q 010098 317 ATAEALAMGKIVVCANHP 334 (518)
Q Consensus 317 ~~lEAma~G~PVV~t~~g 334 (518)
.+++|+.+|++|.+.+-.
T Consensus 107 ptl~Ai~aGK~VaLANKE 124 (385)
T PRK05447 107 PTLAAIRAGKRIALANKE 124 (385)
T ss_pred HHHHHHHCCCcEEEeCHH
Confidence 689999999999997653
No 215
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=52.52 E-value=2e+02 Score=29.85 Aligned_cols=111 Identities=15% Similarity=0.139 Sum_probs=67.9
Q ss_pred cCCHHHHHHHHHHHHHh-----cCCcEEEEEeCCC--------ChHHHHHHHHHcCCeEEE-eCCCCChHHHHhhcCeeE
Q 010098 241 SKGYEELLGLLNIYHKE-----LAGLEMDLYGNGE--------DFDQIQRAAKKLKLVVRV-YPGRDHADPIFHDYKVFL 306 (518)
Q Consensus 241 ~Kg~~~ll~a~~~l~~~-----~~~~~l~ivG~g~--------~~~~l~~~~~~~~l~v~~-~~~~~~~~~l~~~adv~v 306 (518)
..|++..++++-+.... ...-.+-|+|... +..+++.+.++.|+.+.. +.+-...+++.+..+.-+
T Consensus 137 ~~G~~~a~~al~~~~~~~~~~~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~~~~~~ei~~~~~A~l 216 (426)
T cd01972 137 RSGFDAAFHGILRHLVPPQDPTKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAGGCSVEELERASEAAA 216 (426)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCE
Confidence 46777777776543211 1123567777532 248899999999999764 445577777666554333
Q ss_pred ecCCCCCCchHHHHHH--HcCCeEEeeCCC-CccccccCCcEEeeCCHHHHHHHHHHHHh
Q 010098 307 NPSTTDVVCTATAEAL--AMGKIVVCANHP-SNDFFKQFPNCRTYDGRNGFVEATLKALA 363 (518)
Q Consensus 307 ~pS~~E~~~~~~lEAm--a~G~PVV~t~~g-~~e~i~~~~~g~~~~d~~~l~~~i~~ll~ 363 (518)
+-.....++..+.+.| -+|+|.+....+ |. +..+++.+.|.+.+.
T Consensus 217 niv~~~~~g~~~a~~Lee~~GiP~~~~~~P~G~------------~~T~~~l~~ia~~~g 264 (426)
T cd01972 217 NVTLCLDLGYYLGAALEQRFGVPEIKAPQPYGI------------EATDKWLREIAKVLG 264 (426)
T ss_pred EEEEChhHHHHHHHHHHHHhCCCeEecCCccCH------------HHHHHHHHHHHHHhC
Confidence 2222223567888888 489999876543 21 244566666666553
No 216
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=52.43 E-value=1.1e+02 Score=26.64 Aligned_cols=129 Identities=16% Similarity=0.135 Sum_probs=75.9
Q ss_pred cCCcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHhhcC---eeEecCCCCCCchHHHHHHHcCCe----EE
Q 010098 258 LAGLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHDYK---VFLNPSTTDVVCTATAEALAMGKI----VV 329 (518)
Q Consensus 258 ~~~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~ad---v~v~pS~~E~~~~~~lEAma~G~P----VV 329 (518)
.|+-.|.|+-+... ...+.....+-|..+..-.+..+.-...+..- ..|---..++.|+.++|++..-.+ ||
T Consensus 7 ~pd~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivv 86 (182)
T COG4567 7 GPDKSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERRADMRIVV 86 (182)
T ss_pred CCCceeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCCCceEEEEeeecCCCchHHHHHHHhcCCcceEEE
Confidence 34556777765222 24444445555666655444443333333221 334344567899999999987655 67
Q ss_pred eeCCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCCCCChHH--HhcCCHHHHHHHH
Q 010098 330 CANHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPAQPTDAQ--THQLSWESATERF 386 (518)
Q Consensus 330 ~t~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~~l~~~~--~~~~sw~~~~~~~ 386 (518)
.|..++ -+-++-|..-++.. |.+++..++.+--.+.+.....+. ..+.-||.+-+-|
T Consensus 87 LTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~~~d~~~~~~~~pmS~~rl~WEhIqrvl 151 (182)
T COG4567 87 LTGYASIATAVEAVKLGACDYLAKPADADDILAALLRREPDEDTAPPENPMSADRLRWEHIQRVL 151 (182)
T ss_pred EecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhcCCCcccCCCCCCCchhHhhHHHHHHHH
Confidence 777765 56777777777753 899988888776433332222211 1567788765443
No 217
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=52.20 E-value=78 Score=30.55 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=48.5
Q ss_pred cCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 258 LAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 258 ~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
.+++++..+-+ .+.+..++.+++++.. ....+.++++..+|+.+..+..+...-...+++..|++|++...
T Consensus 29 ~~~~el~aV~d-r~~~~a~~~a~~~g~~----~~~~~~eell~~~D~Vvi~tp~~~h~e~~~~aL~aGk~Vi~~s~ 99 (271)
T PRK13302 29 LPGLTLSAVAV-RDPQRHADFIWGLRRP----PPVVPLDQLATHADIVVEAAPASVLRAIVEPVLAAGKKAIVLSV 99 (271)
T ss_pred CCCeEEEEEEC-CCHHHHHHHHHhcCCC----cccCCHHHHhcCCCEEEECCCcHHHHHHHHHHHHcCCcEEEecc
Confidence 35788776654 3455566666665521 13467788888999887776555555556888999999997543
No 218
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=51.98 E-value=79 Score=29.04 Aligned_cols=97 Identities=14% Similarity=0.093 Sum_probs=56.0
Q ss_pred cCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-hHHHHHHHHHcCCe---EEEeCCCCChH--HHHhhcCeeEecCCCCCC
Q 010098 241 SKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLV---VRVYPGRDHAD--PIFHDYKVFLNPSTTDVV 314 (518)
Q Consensus 241 ~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l~---v~~~~~~~~~~--~l~~~adv~v~pS~~E~~ 314 (518)
.|=+..|..|+.-+... ..-++.++|..+. ...+++.+.+.|.. .++.||.-.-. +-+..=|+.|.....+ =
T Consensus 49 ~kT~~~L~~A~~~i~~~-~~~~ILfVgTk~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~~~~Pdliiv~dp~~-~ 126 (204)
T PRK04020 49 RKTDERIRIAAKFLSRY-EPEKILVVSSRQYGQKPVQKFAEVVGAKAITGRFIPGTLTNPSLKGYIEPDVVVVTDPRG-D 126 (204)
T ss_pred HHHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHhCCeeecCccCCCcCcCcchhccCCCCEEEEECCcc-c
Confidence 44455666666555543 3457888887654 35667777776654 24566422111 2222334433332211 2
Q ss_pred chHHHHHHHcCCeEEee-CCCC-cccc
Q 010098 315 CTATAEALAMGKIVVCA-NHPS-NDFF 339 (518)
Q Consensus 315 ~~~~lEAma~G~PVV~t-~~g~-~e~i 339 (518)
..++.||.-+|+|+|+- |..+ ++.+
T Consensus 127 ~~AI~EA~kl~IP~IaivDTn~dp~~V 153 (204)
T PRK04020 127 AQAVKEAIEVGIPVVALCDTDNLTSNV 153 (204)
T ss_pred HHHHHHHHHhCCCEEEEEeCCCCcccC
Confidence 67899999999999998 4444 5443
No 219
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=50.95 E-value=2.2e+02 Score=27.27 Aligned_cols=117 Identities=14% Similarity=0.102 Sum_probs=71.7
Q ss_pred EEEeecccCCHHHHHHHHHHHHHhcCCcEEE-----------EEeCCCC-hHHHHHHHHHcCCeEEE-eCCCCChHHHHh
Q 010098 234 YIGRMVWSKGYEELLGLLNIYHKELAGLEMD-----------LYGNGED-FDQIQRAAKKLKLVVRV-YPGRDHADPIFH 300 (518)
Q Consensus 234 ~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~-----------ivG~g~~-~~~l~~~~~~~~l~v~~-~~~~~~~~~l~~ 300 (518)
+++...--...+.+++.+++++.....+... .-|.|.+ ...+++.++++|+.+.- .....+++.+..
T Consensus 28 ~IAGpc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~ 107 (260)
T TIGR01361 28 VIAGPCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAE 107 (260)
T ss_pred EEEeCCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCCccccccHHHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHh
Confidence 3555555667788888888877553221110 1222222 36677788888886443 224456666666
Q ss_pred hcCeeEecCCCCCCchHHHHHH-HcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHhC
Q 010098 301 DYKVFLNPSTTDVVCTATAEAL-AMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAE 364 (518)
Q Consensus 301 ~adv~v~pS~~E~~~~~~lEAm-a~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~~ 364 (518)
.+|++-.||. +..-..+++++ ..|+||+.+..-+ .+.+++..+++.+.+.
T Consensus 108 ~~d~lkI~s~-~~~n~~LL~~~a~~gkPVilk~G~~-------------~t~~e~~~Ave~i~~~ 158 (260)
T TIGR01361 108 YADILQIGAR-NMQNFELLKEVGKQGKPVLLKRGMG-------------NTIEEWLYAAEYILSS 158 (260)
T ss_pred hCCEEEECcc-cccCHHHHHHHhcCCCcEEEeCCCC-------------CCHHHHHHHHHHHHHc
Confidence 6898888885 33344566655 5699999886511 2667777777777653
No 220
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=49.98 E-value=28 Score=27.89 Aligned_cols=71 Identities=11% Similarity=0.157 Sum_probs=45.9
Q ss_pred EEEEeCCCC----hHHHHHHHHHcCCeEEEeC-CCCChHHHHhhcCeeEecCCCCC-CchHHHHHHHcCCeEEeeCC
Q 010098 263 MDLYGNGED----FDQIQRAAKKLKLVVRVYP-GRDHADPIFHDYKVFLNPSTTDV-VCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 263 l~ivG~g~~----~~~l~~~~~~~~l~v~~~~-~~~~~~~l~~~adv~v~pS~~E~-~~~~~lEAma~G~PVV~t~~ 333 (518)
+++.|+|-. -+.+++.+++.|+++.+.- +..+.++....+|+++.....-- +.-.--.+-..|+||...+.
T Consensus 4 ll~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~~ 80 (99)
T cd05565 4 LVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTTG 80 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeCH
Confidence 456677744 3788899999999877643 66677788889997776543211 11112223455889988764
No 221
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=49.64 E-value=21 Score=30.10 Aligned_cols=39 Identities=23% Similarity=0.191 Sum_probs=30.0
Q ss_pred cEEEEEeeccCCcccccccchHHHHHHHHhcCCee-EEEEec
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERR-VTLVIP 46 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~-V~vi~~ 46 (518)
|||+|+.+.. |+.+-.+...+..+..+.+.| |+ |.|+-.
T Consensus 1 m~~~iv~~~~-Py~~~~~~~al~~A~aa~~~g-h~v~~vFf~ 40 (128)
T PRK00207 1 MRYAIAVTGP-AYGTQQASSAYQFAQALLAEG-HELVSVFFY 40 (128)
T ss_pred CEEEEEEcCC-CCCCHHHHHHHHHHHHHHhCC-CCeeEEEEe
Confidence 6888888776 776666677788888888888 98 477744
No 222
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=49.63 E-value=67 Score=28.67 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=41.5
Q ss_pred cEEEEEeCCCChHHHHHHHHHcCCeEEEeC--------------CCCChHHHHhhcCeeEe--cCCCCC---CchHHHHH
Q 010098 261 LEMDLYGNGEDFDQIQRAAKKLKLVVRVYP--------------GRDHADPIFHDYKVFLN--PSTTDV---VCTATAEA 321 (518)
Q Consensus 261 ~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~--------------~~~~~~~l~~~adv~v~--pS~~E~---~~~~~lEA 321 (518)
-++-|+|-|.--..+-+.++.+|.++.++. ...+.+++++.||+.++ |...++ ++-..++.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~ 116 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAK 116 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHT
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccceeeeeeeeec
Confidence 345555554444444444444554444322 23577799999996654 443333 66677888
Q ss_pred HHcCCeEEeeCCC
Q 010098 322 LAMGKIVVCANHP 334 (518)
Q Consensus 322 ma~G~PVV~t~~g 334 (518)
|--|.-+|.+..|
T Consensus 117 mk~ga~lvN~aRG 129 (178)
T PF02826_consen 117 MKPGAVLVNVARG 129 (178)
T ss_dssp STTTEEEEESSSG
T ss_pred cccceEEEeccch
Confidence 8777766665543
No 223
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=49.37 E-value=2.3e+02 Score=29.64 Aligned_cols=111 Identities=11% Similarity=0.045 Sum_probs=67.5
Q ss_pred ccCCHHHHHHHHHHHHHh--cC--------CcEEEEEeCCC---ChHHHHHHHHHcCCeEE-EeCCCCChHHHHh--hcC
Q 010098 240 WSKGYEELLGLLNIYHKE--LA--------GLEMDLYGNGE---DFDQIQRAAKKLKLVVR-VYPGRDHADPIFH--DYK 303 (518)
Q Consensus 240 ~~Kg~~~ll~a~~~l~~~--~~--------~~~l~ivG~g~---~~~~l~~~~~~~~l~v~-~~~~~~~~~~l~~--~ad 303 (518)
...|.+..++++-..... .| +-.+.|+|.-. +..+++++.+++|+++. .+.+....+++.+ .|.
T Consensus 167 ~~~G~~~a~~al~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~ 246 (456)
T TIGR01283 167 KNLGNKLACDALLKHVIGTREPEPIPVGTTVHDINLIGEFNVAGEFWHVKPLLEKLGIRVLATITGDSRYAEVQTAHRAK 246 (456)
T ss_pred hhHHHHHHHHHHHHHHhccCCcccccccCCCCcEEEEcCCCCcccHHHHHHHHHHcCCeEEEEeCCCCcHHHHHhcccCc
Confidence 446777776666543211 11 34577778522 35689999999999976 4566667777755 444
Q ss_pred eeEecCCCCCCchHHHHHH--HcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHhC
Q 010098 304 VFLNPSTTDVVCTATAEAL--AMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAE 364 (518)
Q Consensus 304 v~v~pS~~E~~~~~~lEAm--a~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~~ 364 (518)
+-|..+ ...+..+.|.| -+|+|.+.. .+ + | .++.+++.+.|.+++..
T Consensus 247 lniv~~--~~~~~~~a~~L~e~~GiP~~~~-~~----~-----G--~~~T~~~L~~Ia~~lg~ 295 (456)
T TIGR01283 247 LNMVQC--SKSMINLARKMEEKYGIPYFEG-SF----Y-----G--IEDTSKALRDIADLFGD 295 (456)
T ss_pred EEEEEC--HhHHHHHHHHHHHHcCCCEEec-CC----C-----c--HHHHHHHHHHHHHHhCC
Confidence 433322 22346678888 579998863 21 0 1 13567777777777653
No 224
>PLN02327 CTP synthase
Probab=48.32 E-value=3.8e+02 Score=28.79 Aligned_cols=94 Identities=10% Similarity=-0.038 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEeCCCC--------hHHHHHHHHHcCCeEE--EeCC--CC--C----------hHH
Q 010098 242 KGYEELLGLLNIYHKELAGLEMDLYGNGED--------FDQIQRAAKKLKLVVR--VYPG--RD--H----------ADP 297 (518)
Q Consensus 242 Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~--------~~~l~~~~~~~~l~v~--~~~~--~~--~----------~~~ 297 (518)
.++....+.+.++......+++-++|.-.+ .+.++.....++..+. +... .+ + ..+
T Consensus 279 ~~~~~W~~~~~~~~~~~~~v~IalVGKY~~l~DAY~Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~ 358 (557)
T PLN02327 279 PDLEEWTARAESCDNLTEPVRIAMVGKYTGLSDSYLSVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWK 358 (557)
T ss_pred CChHHHHHHHHHHhCCCCceEEEEEecccCCcHhHHHHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHH
Confidence 344444444444443333589999998432 1445555555565544 3321 11 1 235
Q ss_pred HHhhcCeeEecCC-----CCCCchHHHHHHHcCCeEEeeCCCC
Q 010098 298 IFHDYKVFLNPST-----TDVVCTATAEALAMGKIVVCANHPS 335 (518)
Q Consensus 298 l~~~adv~v~pS~-----~E~~~~~~lEAma~G~PVV~t~~g~ 335 (518)
.+..+|.+++|.- .|+.-..+-.|...|+|++..-.|.
T Consensus 359 ~L~~~DGIvvpGGfG~~~~~G~i~ai~~are~~iP~LGIClGm 401 (557)
T PLN02327 359 LLKGADGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLGM 401 (557)
T ss_pred hhccCCEEEeCCCCCCcccccHHHHHHHHHHcCCCEEEEcHHH
Confidence 6889998888863 2333334455667899999987764
No 225
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=48.29 E-value=1.6e+02 Score=29.51 Aligned_cols=91 Identities=13% Similarity=0.085 Sum_probs=57.2
Q ss_pred ccEEEEEEeecccCCHHHHHHHHHHHHHhcC-CcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcC--ee
Q 010098 229 TKGAYYIGRMVWSKGYEELLGLLNIYHKELA-GLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYK--VF 305 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~-~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~ad--v~ 305 (518)
...+..+|. .. | ...++++.. .+ +++++-+-+ .+.+..++.++++|.. .+.+.++++...| +.
T Consensus 3 ~~rVgViG~-~~--G-~~h~~al~~----~~~~~eLvaV~d-~~~erA~~~A~~~gi~-----~y~~~eell~d~Di~~V 68 (343)
T TIGR01761 3 VQSVVVCGT-RF--G-QFYLAAFAA----APERFELAGILA-QGSERSRALAHRLGVP-----LYCEVEELPDDIDIACV 68 (343)
T ss_pred CcEEEEEeH-HH--H-HHHHHHHHh----CCCCcEEEEEEc-CCHHHHHHHHHHhCCC-----ccCCHHHHhcCCCEEEE
Confidence 345666775 22 2 245566633 34 677766665 4567778888888853 4578888887666 34
Q ss_pred EecCC--CCCCchHHHHHHHcCCeEEeeCC
Q 010098 306 LNPST--TDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 306 v~pS~--~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
+.|+. ...-.-...+|+..|+.|+|=.-
T Consensus 69 ~ipt~~P~~~H~e~a~~aL~aGkHVL~EKP 98 (343)
T TIGR01761 69 VVRSAIVGGQGSALARALLARGIHVLQEHP 98 (343)
T ss_pred EeCCCCCCccHHHHHHHHHhCCCeEEEcCC
Confidence 44432 11223346779999999999754
No 226
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=47.99 E-value=3.1e+02 Score=27.64 Aligned_cols=117 Identities=14% Similarity=0.046 Sum_probs=73.1
Q ss_pred EEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeC-------------CCC-hHHHHHHHHHcCCeEEE-eCCCCCh
Q 010098 231 GAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGN-------------GED-FDQIQRAAKKLKLVVRV-YPGRDHA 295 (518)
Q Consensus 231 ~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~-------------g~~-~~~l~~~~~~~~l~v~~-~~~~~~~ 295 (518)
.++..| ...-.+-+.+++.+..+++. .+++.--|. |.+ .+.+.+..++.|+.+.- ....+++
T Consensus 102 l~vIAG-PCsIEs~eq~l~~A~~lk~~--g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~~~tev~d~~~v 178 (352)
T PRK13396 102 VVVVAG-PCSVENEEMIVETAKRVKAA--GAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLGIITEVMDAADL 178 (352)
T ss_pred EEEEEe-CCcccCHHHHHHHHHHHHHc--CCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCcEEEeeCCHHHH
Confidence 333444 44556777888888888776 455554443 211 25556666788886442 2344555
Q ss_pred HHHHhhcCeeEecCC-CCCCchHHHHHH-HcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHhCC
Q 010098 296 DPIFHDYKVFLNPST-TDVVCTATAEAL-AMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEE 365 (518)
Q Consensus 296 ~~l~~~adv~v~pS~-~E~~~~~~lEAm-a~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~ 365 (518)
+.+...+|++-.+|. ...| .+++++ ..|+||+.+..-+ .+.+++..+++.+.+.-
T Consensus 179 ~~~~~~~d~lqIga~~~~n~--~LL~~va~t~kPVllk~G~~-------------~t~ee~~~A~e~i~~~G 235 (352)
T PRK13396 179 EKIAEVADVIQVGARNMQNF--SLLKKVGAQDKPVLLKRGMA-------------ATIDEWLMAAEYILAAG 235 (352)
T ss_pred HHHHhhCCeEEECcccccCH--HHHHHHHccCCeEEEeCCCC-------------CCHHHHHHHHHHHHHcC
Confidence 555566899999986 3344 445554 6799999986521 26778888888877543
No 227
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=47.29 E-value=53 Score=28.07 Aligned_cols=90 Identities=17% Similarity=0.272 Sum_probs=56.5
Q ss_pred HHHHHHHHHcCCeEEEeCCCCChH--HHHhhc----C-eeEecCCCCCCchHHHHHHH-cCCeEEeeCCC---Ccc----
Q 010098 273 DQIQRAAKKLKLVVRVYPGRDHAD--PIFHDY----K-VFLNPSTTDVVCTATAEALA-MGKIVVCANHP---SND---- 337 (518)
Q Consensus 273 ~~l~~~~~~~~l~v~~~~~~~~~~--~l~~~a----d-v~v~pS~~E~~~~~~lEAma-~G~PVV~t~~g---~~e---- 337 (518)
+.+++.++++|+.+.++-.-.+-+ +.++.+ | +.++|.-+-..+..+.+|++ .++|+|=--.. .+|
T Consensus 31 ~~~~~~a~~~g~~v~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~vEVHiSNi~aRE~fR~ 110 (141)
T TIGR01088 31 EIIETFAAQLNVELEFFQSNSEGQLIDKIHEAEGQYDGIIINPGALTHTSVALRDALAAVSLPVVEVHLSNVHAREEFRH 110 (141)
T ss_pred HHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhccccCCEEEEcChHHhhhHHHHHHHHHcCCCCEEEEEcCCccccccccc
Confidence 555666667777777655332222 444443 4 88899877778999999975 78999865332 244
Q ss_pred --ccccCCcEEeeC-CHHHHHHHHHHHH
Q 010098 338 --FFKQFPNCRTYD-GRNGFVEATLKAL 362 (518)
Q Consensus 338 --~i~~~~~g~~~~-d~~~l~~~i~~ll 362 (518)
++..-..|.+.. -.+...-++..++
T Consensus 111 ~S~is~~~~G~I~G~G~~gY~lAl~a~~ 138 (141)
T TIGR01088 111 HSYTAPVAGGVIVGLGAQGYLLALRYLV 138 (141)
T ss_pred cccccccceEEEeecCHHHHHHHHHHHH
Confidence 344455666654 5666666666554
No 228
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=47.07 E-value=2.3e+02 Score=26.38 Aligned_cols=36 Identities=11% Similarity=0.119 Sum_probs=26.8
Q ss_pred CeeEecCCCCCCchHHHHHHHcCCeEEee-CCCC-cccc
Q 010098 303 KVFLNPSTTDVVCTATAEALAMGKIVVCA-NHPS-NDFF 339 (518)
Q Consensus 303 dv~v~pS~~E~~~~~~lEAma~G~PVV~t-~~g~-~e~i 339 (518)
|+.|.-...|. -.+++||.-+++|+|+- |..+ ++.+
T Consensus 175 D~vvvln~~e~-~sAilEA~K~~IPTIgIVDtN~~P~li 212 (251)
T KOG0832|consen 175 DLVVVLNPEEN-HSAILEAAKMAIPTIGIVDTNCNPELI 212 (251)
T ss_pred ceeEecCcccc-cHHHHHHHHhCCCeEEEecCCCCccce
Confidence 77776666666 56899999999999998 4444 5554
No 229
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=46.42 E-value=23 Score=28.07 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=44.6
Q ss_pred EEEEeCCCC----hHHHHHHHHHcCCeEEEe-CCCCChHHHHhhcCeeEecCCCCCCchHHHHHH--HcCCeEEeeCC
Q 010098 263 MDLYGNGED----FDQIQRAAKKLKLVVRVY-PGRDHADPIFHDYKVFLNPSTTDVVCTATAEAL--AMGKIVVCANH 333 (518)
Q Consensus 263 l~ivG~g~~----~~~l~~~~~~~~l~v~~~-~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAm--a~G~PVV~t~~ 333 (518)
|++.|.|-. -..+++.+++.|++..+. .+..+..+....+|+++...... +-..-++.. ..|+||..-+.
T Consensus 7 Ll~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~-~~~~~i~~~~~~~~ipv~~I~~ 83 (95)
T TIGR00853 7 LLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVA-YMLPDLKKETDKKGIPVEVING 83 (95)
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHH-HHHHHHHHHhhhcCCCEEEeCh
Confidence 456666644 267788888889887653 35566667778899777654321 123334444 34779998765
No 230
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=46.21 E-value=1.1e+02 Score=29.09 Aligned_cols=99 Identities=13% Similarity=0.087 Sum_probs=55.2
Q ss_pred ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-hHHHHHHHHHcCCe---EEEeCCCC--ChHHHHhhcCeeEecCCCCC
Q 010098 240 WSKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLV---VRVYPGRD--HADPIFHDYKVFLNPSTTDV 313 (518)
Q Consensus 240 ~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l~---v~~~~~~~--~~~~l~~~adv~v~pS~~E~ 313 (518)
-.|=++.|..|+.-+..-...-.++++|..+. ...+++.+...|.. .++.+|.- .....+..=|+.|...-. .
T Consensus 51 L~kT~~~L~~Aa~~i~~i~~~~~Il~Vstr~~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~~~~~f~~P~llIV~Dp~-~ 129 (249)
T PTZ00254 51 LAKTWEKLKLAARVIAAIENPADVVVVSSRPYGQRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEPRLLIVTDPR-T 129 (249)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcEEEEEcCHHHHHHHHHHHHHhCCeEECCcccCCCCCCccccccCCCCEEEEeCCC-c
Confidence 34555566666555533212345677887554 35566666666644 24555421 122233344544443321 1
Q ss_pred CchHHHHHHHcCCeEEee-CCCC-cccc
Q 010098 314 VCTATAEALAMGKIVVCA-NHPS-NDFF 339 (518)
Q Consensus 314 ~~~~~lEAma~G~PVV~t-~~g~-~e~i 339 (518)
=..++.||--+|+|||+- |..+ .+++
T Consensus 130 d~qAI~EA~~lnIPvIal~DTds~p~~V 157 (249)
T PTZ00254 130 DHQAIREASYVNIPVIALCDTDSPLEYV 157 (249)
T ss_pred chHHHHHHHHhCCCEEEEecCCCCcccC
Confidence 256899999999999998 4444 4444
No 231
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=45.88 E-value=65 Score=29.24 Aligned_cols=68 Identities=16% Similarity=0.165 Sum_probs=47.1
Q ss_pred EEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCC-----------CCchHHHHHHHcCCeEEee
Q 010098 263 MDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTD-----------VVCTATAEALAMGKIVVCA 331 (518)
Q Consensus 263 l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E-----------~~~~~~lEAma~G~PVV~t 331 (518)
++.+|+..+...++.+++..|.++.++....+ ...+|.+++|.-.+ .+--.+.++...|+||++.
T Consensus 3 ~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~~~----~~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgi 78 (194)
T cd01750 3 VIRYPDISNFTDLDPLAREPGVDVRYVEVPEG----LGDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGI 78 (194)
T ss_pred eecCCCccCHHHHHHHHhcCCceEEEEeCCCC----CCCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEE
Confidence 44556556678888888888888777765555 56788888885321 2233467778889999988
Q ss_pred CCC
Q 010098 332 NHP 334 (518)
Q Consensus 332 ~~g 334 (518)
-.|
T Consensus 79 C~G 81 (194)
T cd01750 79 CGG 81 (194)
T ss_pred CHH
Confidence 554
No 232
>PRK06849 hypothetical protein; Provisional
Probab=45.73 E-value=1.2e+02 Score=31.01 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=26.7
Q ss_pred CCccccEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|+++ |+|+|..... | ..+.+++.|.+.| |+|+++..
T Consensus 1 ~~~~-~~VLI~G~~~-~-------~~l~iar~l~~~G-~~Vi~~d~ 36 (389)
T PRK06849 1 MNTK-KTVLITGARA-P-------AALELARLFHNAG-HTVILADS 36 (389)
T ss_pred CCCC-CEEEEeCCCc-H-------HHHHHHHHHHHCC-CEEEEEeC
Confidence 6665 8888875433 2 3577889999998 99999866
No 233
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=45.66 E-value=1.1e+02 Score=28.68 Aligned_cols=97 Identities=14% Similarity=0.260 Sum_probs=53.0
Q ss_pred EEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC--hHHHHHHH----HHcCCeEEEeCCCCChHHHHhhcCe
Q 010098 231 GAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAA----KKLKLVVRVYPGRDHADPIFHDYKV 304 (518)
Q Consensus 231 ~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~----~~~~l~v~~~~~~~~~~~l~~~adv 304 (518)
.|+=+|++ |...+++.+.-=+...+++...++|+|.. .++..+.. ++.+.+.. +
T Consensus 6 GiiKlGNi----g~s~~idl~lDErAdRedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf~----------------i 65 (277)
T PRK00994 6 GIIKLGNI----GMSPVIDLLLDERADREDIDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDFV----------------I 65 (277)
T ss_pred EEEEeccc----chHHHHHHHHHhhhcccCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEE----------------E
Confidence 34455666 44555555543345567899999999875 33333221 22222111 3
Q ss_pred eEecCCCCCCchHHHHHHH-cCCeEEe-eCCCC---ccccccCCcEEe
Q 010098 305 FLNPSTTDVVCTATAEALA-MGKIVVC-ANHPS---NDFFKQFPNCRT 347 (518)
Q Consensus 305 ~v~pS~~E~~~~~~lEAma-~G~PVV~-t~~g~---~e~i~~~~~g~~ 347 (518)
++.|.-.-+-|...-|.+. .|+|+|. +|.++ .+-+++..-|++
T Consensus 66 ~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g~GYI 113 (277)
T PRK00994 66 VISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAMEEQGLGYI 113 (277)
T ss_pred EECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccchHHHHHhcCCcEE
Confidence 4444444555666777765 5677444 45555 455666666665
No 234
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=45.31 E-value=1.8e+02 Score=25.06 Aligned_cols=91 Identities=19% Similarity=0.266 Sum_probs=56.6
Q ss_pred HHHHHHHHHcCCeEEEeCCCCChH--HHHh----hcC-eeEecCCCCCCchHHHHHH-HcCCeEEeeCCC---Ccc----
Q 010098 273 DQIQRAAKKLKLVVRVYPGRDHAD--PIFH----DYK-VFLNPSTTDVVCTATAEAL-AMGKIVVCANHP---SND---- 337 (518)
Q Consensus 273 ~~l~~~~~~~~l~v~~~~~~~~~~--~l~~----~ad-v~v~pS~~E~~~~~~lEAm-a~G~PVV~t~~g---~~e---- 337 (518)
+.+++.++++++.+.++-.-.+-+ +.++ .+| +.++|.-+--.+..+.+|+ +.++|+|=--.. .+|
T Consensus 33 ~~~~~~a~~~g~~~~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~VEVHiSNi~aRE~fR~ 112 (146)
T PRK13015 33 ALCRAAAEALGLEVEFRQSNHEGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAALELPVIEVHISNVHAREAFRH 112 (146)
T ss_pred HHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHcCCCCEEEEEcCCccccccccc
Confidence 455666666777777655322222 3333 334 8889987777789999996 468999865332 244
Q ss_pred --ccccCCcEEeeC-CHHHHHHHHHHHHh
Q 010098 338 --FFKQFPNCRTYD-GRNGFVEATLKALA 363 (518)
Q Consensus 338 --~i~~~~~g~~~~-d~~~l~~~i~~ll~ 363 (518)
++.....|.+.. -.+...-++..+++
T Consensus 113 ~S~is~~~~G~I~G~G~~gY~lAl~al~~ 141 (146)
T PRK13015 113 HSYVSAIADGVICGLGTEGYRLALRRLAT 141 (146)
T ss_pred cccccCceeEEEeeCCHHHHHHHHHHHHH
Confidence 445556667664 56666666666553
No 235
>PLN03007 UDP-glucosyltransferase family protein
Probab=44.99 E-value=26 Score=37.07 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=30.5
Q ss_pred CCccccEEEEEeeccCCcccccccc-hHHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQQHIAIFTTASLPWLTGTAVN-PLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~rI~ivt~~~~P~~~G~~~~-~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|+.++.||+++.-.. .| -++ .+.+++.|+.+| ++||++++
T Consensus 1 ~~~~~~hVvlvp~pa----~G-Hi~P~L~LAk~L~~rG-~~VT~vtt 41 (482)
T PLN03007 1 MNHEKLHILFFPFMA----HG-HMIPTLDMAKLFSSRG-AKSTILTT 41 (482)
T ss_pred CCCCCcEEEEECCCc----cc-cHHHHHHHHHHHHhCC-CEEEEEEC
Confidence 777778998885422 34 444 467889999998 99999998
No 236
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=44.85 E-value=1.3e+02 Score=29.63 Aligned_cols=67 Identities=15% Similarity=0.228 Sum_probs=47.0
Q ss_pred EEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhc--CeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 262 EMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDY--KVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 262 ~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~a--dv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
.++-+.+ .+.+..++.+++++.. ..+.+.+++++.- |+++..+....-.-.+..|+..|++|+|=.-
T Consensus 31 ~~vav~d-~~~~~a~~~a~~~~~~----~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKP 99 (342)
T COG0673 31 ELVAVVD-RDPERAEAFAEEFGIA----KAYTDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKP 99 (342)
T ss_pred EEEEEec-CCHHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCC
Confidence 4444433 4577788888888875 4567888889864 7666665444434445999999999999754
No 237
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=44.70 E-value=1.3e+02 Score=22.37 Aligned_cols=60 Identities=15% Similarity=0.073 Sum_probs=40.6
Q ss_pred ccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC--hHHHHHHHHHcCCeEEEeC
Q 010098 229 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLVVRVYP 290 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~~~l~v~~~~ 290 (518)
...|++.|.-. ....+.+-+++.++..+.|+.. ++-|+.+. +....+++++.++.+..+.
T Consensus 3 g~rVli~GgR~-~~D~~~i~~~Ld~~~~~~~~~~-lvhGga~~GaD~iA~~wA~~~gv~~~~~~ 64 (71)
T PF10686_consen 3 GMRVLITGGRD-WTDHELIWAALDKVHARHPDMV-LVHGGAPKGADRIAARWARERGVPVIRFP 64 (71)
T ss_pred CCEEEEEECCc-cccHHHHHHHHHHHHHhCCCEE-EEECCCCCCHHHHHHHHHHHCCCeeEEeC
Confidence 34566666543 4478889999999999888765 55555423 4555778888888765544
No 238
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=44.29 E-value=35 Score=32.27 Aligned_cols=45 Identities=22% Similarity=0.271 Sum_probs=34.6
Q ss_pred CCccccEEEEEeecc----CCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQQHIAIFTTAS----LPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~rI~ivt~~~----~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|+.+++++|+|.+.. .+...|+..-...+++.|.+.| ++|++..-
T Consensus 3 m~~~p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lg-F~V~~~~d 51 (241)
T smart00115 3 MNSKPRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLG-YEVHVKNN 51 (241)
T ss_pred CCCCCCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCC-CEEEEecC
Confidence 788888888887553 3566777777788889999998 99998743
No 239
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=44.28 E-value=3e+02 Score=26.48 Aligned_cols=116 Identities=12% Similarity=0.046 Sum_probs=74.0
Q ss_pred EEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeC-----------CCC---hHHHHHHHHHcCCeEEE-eCCCCChH
Q 010098 232 AYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGN-----------GED---FDQIQRAAKKLKLVVRV-YPGRDHAD 296 (518)
Q Consensus 232 il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~-----------g~~---~~~l~~~~~~~~l~v~~-~~~~~~~~ 296 (518)
++.++....-.+.+.+++.++++++. .++++..|. |.. ...+++.+++.|+.+.- .....+.+
T Consensus 28 ~~~iaGPCsie~~~~~~~~A~~lk~~--g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~ 105 (266)
T PRK13398 28 KIIIAGPCAVESEEQMVKVAEKLKEL--GVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDTRDVE 105 (266)
T ss_pred EEEEEeCCcCCCHHHHHHHHHHHHHc--CCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCChhhHH
Confidence 34555555666889999999999876 466666662 111 25677778888887443 23445555
Q ss_pred HHHhhcCeeEecCC-CCCCchHHHHHHHcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHh
Q 010098 297 PIFHDYKVFLNPST-TDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALA 363 (518)
Q Consensus 297 ~l~~~adv~v~pS~-~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~ 363 (518)
.+...+|++-.+|. .+.++ -+-++...|+||+.++.-+ .+.+++..+++.+.+
T Consensus 106 ~l~~~vd~~kIga~~~~n~~-LL~~~a~~gkPV~lk~G~~-------------~s~~e~~~A~e~i~~ 159 (266)
T PRK13398 106 EVADYADMLQIGSRNMQNFE-LLKEVGKTKKPILLKRGMS-------------ATLEEWLYAAEYIMS 159 (266)
T ss_pred HHHHhCCEEEECcccccCHH-HHHHHhcCCCcEEEeCCCC-------------CCHHHHHHHHHHHHh
Confidence 55556898888885 33332 2344456799999886521 255677777777664
No 240
>PLN02928 oxidoreductase family protein
Probab=43.75 E-value=95 Score=31.18 Aligned_cols=43 Identities=12% Similarity=0.174 Sum_probs=28.3
Q ss_pred CCCChHHHHhhcCeeEe--cCCCCC---CchHHHHHHHcCCeEEeeCC
Q 010098 291 GRDHADPIFHDYKVFLN--PSTTDV---VCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 291 ~~~~~~~l~~~adv~v~--pS~~E~---~~~~~lEAma~G~PVV~t~~ 333 (518)
...+.+++++.||+.++ |...|+ ++-..++.|--|.-+|-+..
T Consensus 216 ~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaR 263 (347)
T PLN02928 216 GHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIAR 263 (347)
T ss_pred cccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCC
Confidence 45678899999997665 444444 55567777766665655544
No 241
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=43.62 E-value=1.3e+02 Score=29.63 Aligned_cols=56 Identities=9% Similarity=0.155 Sum_probs=36.4
Q ss_pred CChHHHHhhcCeeEe--cCCCCC---CchHHHHHHHcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHH
Q 010098 293 DHADPIFHDYKVFLN--PSTTDV---VCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLK 360 (518)
Q Consensus 293 ~~~~~l~~~adv~v~--pS~~E~---~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ 360 (518)
.+.+++++.||+.++ |...|+ ++-..++.|--|.-+|-+..|+ ++ |.+++.++++.
T Consensus 188 ~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~--vV----------De~AL~~AL~~ 248 (311)
T PRK08410 188 VSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGG--IV----------NEKDLAKALDE 248 (311)
T ss_pred ecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCcc--cc----------CHHHHHHHHHc
Confidence 467899999996554 444454 6777888887776666664432 11 56677666654
No 242
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=43.44 E-value=3.2e+02 Score=28.60 Aligned_cols=50 Identities=18% Similarity=0.127 Sum_probs=31.8
Q ss_pred HHHHHHHcCCeEEeeCCCC-----c-cccccCCcEEeeC---CHHHHHHHHHHHHhCCC
Q 010098 317 ATAEALAMGKIVVCANHPS-----N-DFFKQFPNCRTYD---GRNGFVEATLKALAEEP 366 (518)
Q Consensus 317 ~~lEAma~G~PVV~t~~g~-----~-e~i~~~~~g~~~~---d~~~l~~~i~~ll~~~~ 366 (518)
+++|++.+|+|+|+...=+ . .+.+.+..+.... +...+.+++..++++++
T Consensus 366 St~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~~~~ 424 (496)
T KOG1192|consen 366 STLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSEELLEAIKEILENEE 424 (496)
T ss_pred HHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcHHHHHHHHHHHcChH
Confidence 4599999999999764422 3 3334444444431 22338888888887653
No 243
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=42.13 E-value=36 Score=26.98 Aligned_cols=70 Identities=14% Similarity=0.147 Sum_probs=45.1
Q ss_pred EEEEeCCCC----hHHHHHHHHHcCCeEEEe-CCCCChHHHHhhcCeeEecCCCCCCchHHHH--HHHcCCeEEeeCC
Q 010098 263 MDLYGNGED----FDQIQRAAKKLKLVVRVY-PGRDHADPIFHDYKVFLNPSTTDVVCTATAE--ALAMGKIVVCANH 333 (518)
Q Consensus 263 l~ivG~g~~----~~~l~~~~~~~~l~v~~~-~~~~~~~~l~~~adv~v~pS~~E~~~~~~lE--Ama~G~PVV~t~~ 333 (518)
+++.|.|-. -+.+++.+++.|+++.+. .+..+..+....+|+.+.....- +-..-++ +.-.++||..-+.
T Consensus 3 l~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~-~~~~~i~~~~~~~~~pv~~I~~ 79 (96)
T cd05564 3 LLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVR-YMLDEVKKKAAEYGIPVAVIDM 79 (96)
T ss_pred EEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHH-HHHHHHHHHhccCCCcEEEcCh
Confidence 566677654 367788888889886653 35566667788899766554321 1223333 3457899988765
No 244
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=41.99 E-value=1.6e+02 Score=27.83 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=67.8
Q ss_pred EEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeC-------CCChHHHHHHHHHcCCeEEEeCC----CCChHHHH
Q 010098 231 GAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGN-------GEDFDQIQRAAKKLKLVVRVYPG----RDHADPIF 299 (518)
Q Consensus 231 ~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~-------g~~~~~l~~~~~~~~l~v~~~~~----~~~~~~l~ 299 (518)
.++|+|-+.-.-|...+-+-+..+++++ .+.|+|+.. |-. ++.-+...+.|.++.-.|. ..++.+++
T Consensus 2 riLfiGDvvGk~Gr~~v~~~Lp~lk~ky-k~dfvI~N~ENaa~G~Git-~k~y~~l~~~G~dviT~GNH~wd~~ei~~~i 79 (266)
T COG1692 2 RILFIGDVVGKPGRKAVKEHLPQLKSKY-KIDFVIVNGENAAGGFGIT-EKIYKELLEAGADVITLGNHTWDQKEILDFI 79 (266)
T ss_pred eEEEEecccCcchHHHHHHHhHHHHHhh-cCcEEEEcCccccCCcCCC-HHHHHHHHHhCCCEEecccccccchHHHHHh
Confidence 4789999999999999999999998886 678888865 222 3333344567877666662 44555888
Q ss_pred hhcCeeEecCC----CCCCchHHHHHHHcCCeEEeeCCC
Q 010098 300 HDYKVFLNPST----TDVVCTATAEALAMGKIVVCANHP 334 (518)
Q Consensus 300 ~~adv~v~pS~----~E~~~~~~lEAma~G~PVV~t~~g 334 (518)
...+.++-|.- .-|.|..+++ ..|+-+-.++.-
T Consensus 80 ~~~~~ilRP~N~p~~~~G~G~~~f~--~ng~ki~V~Nl~ 116 (266)
T COG1692 80 DNADRILRPANYPDGTPGKGSRIFK--INGKKLAVINLM 116 (266)
T ss_pred hcccceeccCCCCCCCCcceEEEEE--eCCcEEEEEEee
Confidence 88999998863 2334444554 445555555443
No 245
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=41.63 E-value=33 Score=30.07 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=25.3
Q ss_pred hcCeeEecC------CCCCCchHHHHHHHcCCeEEeeCCC
Q 010098 301 DYKVFLNPS------TTDVVCTATAEALAMGKIVVCANHP 334 (518)
Q Consensus 301 ~adv~v~pS------~~E~~~~~~lEAma~G~PVV~t~~g 334 (518)
.+|++|..- ...+|.-.+.||++.|+||+++=..
T Consensus 93 ~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~ 132 (159)
T PF10649_consen 93 GADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPP 132 (159)
T ss_pred CCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECH
Confidence 468877763 2334666799999999999999554
No 246
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=40.71 E-value=65 Score=27.71 Aligned_cols=90 Identities=14% Similarity=0.238 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCCeEEEeCCCCChH--HHHhhc----C-eeEecCCCCCCchHHHHHHH-cCCeEEeeCCC---Cccc---
Q 010098 273 DQIQRAAKKLKLVVRVYPGRDHAD--PIFHDY----K-VFLNPSTTDVVCTATAEALA-MGKIVVCANHP---SNDF--- 338 (518)
Q Consensus 273 ~~l~~~~~~~~l~v~~~~~~~~~~--~l~~~a----d-v~v~pS~~E~~~~~~lEAma-~G~PVV~t~~g---~~e~--- 338 (518)
+.+++.++.+|+.+.++-.-.+-+ +.++.+ | +.++|.-+--.+..+.+|++ .++|+|=--.. .+|-
T Consensus 33 ~~~~~~a~~~g~~v~~~QSN~EGelId~I~~a~~~~dgiiINpga~THtSiAl~DAl~~~~~P~VEVHiSNi~aRE~fR~ 112 (146)
T PRK05395 33 ALLEEEAAELGVELEFFQSNHEGELIDRIHEARDGADGIIINPGAYTHTSVALRDALAAVSIPVIEVHLSNIHAREEFRH 112 (146)
T ss_pred HHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhcccCCcEEEECchHHHHHHHHHHHHHHcCCCCEEEEecCCccccccccc
Confidence 445556666677766655322222 444433 4 78899877777999999975 68999865332 2443
Q ss_pred ---cccCCcEEeeC-CHHHHHHHHHHHH
Q 010098 339 ---FKQFPNCRTYD-GRNGFVEATLKAL 362 (518)
Q Consensus 339 ---i~~~~~g~~~~-d~~~l~~~i~~ll 362 (518)
+..-..|.+.. -.+...-++..++
T Consensus 113 ~S~is~~a~G~I~G~G~~gY~lAl~al~ 140 (146)
T PRK05395 113 HSYISDVAVGVICGFGADGYLLALEALA 140 (146)
T ss_pred cccccccceEEEeeCCHHhHHHHHHHHH
Confidence 44455666654 5556655665554
No 247
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=40.56 E-value=1.6e+02 Score=31.02 Aligned_cols=71 Identities=14% Similarity=0.034 Sum_probs=51.6
Q ss_pred CCChHHHHhhcCeeEecCCCCCCchHHHHHHHcC-CeEEeeCCCC---ccccccCCcEEeeCCHHHHHHHHHHHHh
Q 010098 292 RDHADPIFHDYKVFLNPSTTDVVCTATAEALAMG-KIVVCANHPS---NDFFKQFPNCRTYDGRNGFVEATLKALA 363 (518)
Q Consensus 292 ~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G-~PVV~t~~g~---~e~i~~~~~g~~~~d~~~l~~~i~~ll~ 363 (518)
.....+.++.+..++.|.-.+...-.++||+..| +|||.+|.-- .+.+.-..-.+.++ .+++-+.|.++|.
T Consensus 334 ~~~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~-~~~v~~~~~~iL~ 408 (464)
T KOG1021|consen 334 PLNYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVP-EKDVPELIKNILL 408 (464)
T ss_pred cchHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEE-HHHhhhHHHHHHH
Confidence 4566689999999999998888888999999999 5899998742 55554444444455 5555555566554
No 248
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=39.62 E-value=52 Score=27.33 Aligned_cols=39 Identities=13% Similarity=0.052 Sum_probs=21.8
Q ss_pred cEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|||+|+.+.--- ..-..-.++.++.+-.++| |+|+++.+
T Consensus 1 Mki~fvmDpi~~-i~~~kDTT~alm~eAq~RG-hev~~~~~ 39 (119)
T PF02951_consen 1 MKIAFVMDPIES-IKPYKDTTFALMLEAQRRG-HEVFYYEP 39 (119)
T ss_dssp -EEEEEES-GGG---TTT-HHHHHHHHHHHTT--EEEEE-G
T ss_pred CeEEEEeCCHHH-CCCCCChHHHHHHHHHHCC-CEEEEEEc
Confidence 689999973311 1111123455667777787 99999987
No 249
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=39.42 E-value=1.8e+02 Score=22.66 Aligned_cols=87 Identities=6% Similarity=0.023 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCC-eEEEeCCCCChHHHHhh--cCeeEecC-CCCCCchHHHHHHHc---CCeEEe-eCCCC----ccccc
Q 010098 273 DQIQRAAKKLKL-VVRVYPGRDHADPIFHD--YKVFLNPS-TTDVVCTATAEALAM---GKIVVC-ANHPS----NDFFK 340 (518)
Q Consensus 273 ~~l~~~~~~~~l-~v~~~~~~~~~~~l~~~--adv~v~pS-~~E~~~~~~lEAma~---G~PVV~-t~~g~----~e~i~ 340 (518)
+.++...+..+. .+.......+..+.+.. .|+.+.-. ..+.-+..+++.+.. +.|+|. |+... .+.++
T Consensus 12 ~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~ 91 (112)
T PF00072_consen 12 ELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALR 91 (112)
T ss_dssp HHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCCCCHHHHHHHHH
Confidence 445555555565 44444443343344443 35555543 333455556555443 667653 44433 56667
Q ss_pred cCCcEEeeC--CHHHHHHHHH
Q 010098 341 QFPNCRTYD--GRNGFVEATL 359 (518)
Q Consensus 341 ~~~~g~~~~--d~~~l~~~i~ 359 (518)
.|..+++.. +++++.++|+
T Consensus 92 ~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 92 AGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp TTESEEEESSSSHHHHHHHHH
T ss_pred CCCCEEEECCCCHHHHHHhhC
Confidence 788888864 8888888764
No 250
>PLN02173 UDP-glucosyl transferase family protein
Probab=39.38 E-value=39 Score=35.27 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=29.8
Q ss_pred CCccccEEEEEeeccCCcccccccch-HHHHHHHHhcCCeeEEEEecc
Q 010098 1 MDRKQQHIAIFTTASLPWLTGTAVNP-LFRAAYLAKDGERRVTLVIPW 47 (518)
Q Consensus 1 M~~~~~rI~ivt~~~~P~~~G~~~~~-~~~a~~L~~~gg~~V~vi~~~ 47 (518)
|.+++.||++|. +..-+-+.+ +.+|+.|+.+| ..||++++.
T Consensus 1 ~~~~~~hvv~~P-----~paqGHi~P~l~lAk~La~~G-~~vT~v~t~ 42 (449)
T PLN02173 1 MEKMRGHVLAVP-----FPSQGHITPIRQFCKRLHSKG-FKTTHTLTT 42 (449)
T ss_pred CCCCCcEEEEec-----CcccccHHHHHHHHHHHHcCC-CEEEEEECC
Confidence 777767888883 332224444 67889999887 999999883
No 251
>PRK08572 rps17p 30S ribosomal protein S17P; Reviewed
Probab=39.06 E-value=33 Score=27.85 Aligned_cols=43 Identities=28% Similarity=0.529 Sum_probs=29.3
Q ss_pred HhCCCCccccCcccCCCCcccceeee----eecceeeEEEEeeeEEE
Q 010098 456 ELGLVTELGKGHCHRPNGSWFGSVLV----LVGSVIGVLFVKSVTLK 498 (518)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 498 (518)
++|++-+.-+..|+-++-||.|.+.+ +.|.|+..-.-|++++.
T Consensus 2 ~ig~~~~~p~~~~~d~~cP~~g~l~irgk~l~G~VvS~Km~KTvvV~ 48 (108)
T PRK08572 2 NIGLDVKPPEEECDDPNCPFHGTLPVRGQVLEGTVVSDKMHKTVVVE 48 (108)
T ss_pred ccccCCCCCcccccCCCCCCcceeeeeeEEEEEEEEecCCCceEEEE
Confidence 34555555667888899999998865 66666665555655443
No 252
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=38.87 E-value=1.9e+02 Score=27.60 Aligned_cols=44 Identities=20% Similarity=0.161 Sum_probs=28.6
Q ss_pred HcCCeEEeeCCCC----c-------cccccCCcEEee-------CCHHHHHHHHHHHHhCCC
Q 010098 323 AMGKIVVCANHPS----N-------DFFKQFPNCRTY-------DGRNGFVEATLKALAEEP 366 (518)
Q Consensus 323 a~G~PVV~t~~g~----~-------e~i~~~~~g~~~-------~d~~~l~~~i~~ll~~~~ 366 (518)
+||+|||++--+. . ..++.|..|..+ ++|+.+..+|..+..+..
T Consensus 200 ~~~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~~m~~Ai~~Ivhe~~ 261 (265)
T COG1830 200 ACGVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHEDPEAMVKAIQAIVHENA 261 (265)
T ss_pred hCCCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCChHHHHHHHHHHhcCCC
Confidence 6789999885542 1 223446666653 488888888888876543
No 253
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=37.95 E-value=1.7e+02 Score=28.63 Aligned_cols=64 Identities=8% Similarity=0.067 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChH--HHHhhcCeeEec
Q 010098 243 GYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHAD--PIFHDYKVFLNP 308 (518)
Q Consensus 243 g~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~--~l~~~adv~v~p 308 (518)
..+...+|+..+.++.++..++|+++ +.+.+++........+.+.+..+..+ .++..||.+|.+
T Consensus 189 ~~~Yy~~Ai~~i~~~~~~~~f~ifSD--D~~w~k~~l~~~~~~~~~~~~~~~~~Dl~lms~C~~~Iis 254 (298)
T PF01531_consen 189 DKDYYKKAIEYIREKVKNPKFFIFSD--DIEWCKENLKFSNGDVYFSGNNSPYEDLYLMSQCKHFIIS 254 (298)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHhhcCCcEEEECCCCHHHHHHHHHhCCcEEEC
Confidence 45678899999998888999999997 55566655544433344444423333 578899988777
No 254
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=37.58 E-value=72 Score=23.34 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=42.7
Q ss_pred CCcEEEEEeCC-CChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeC
Q 010098 259 AGLEMDLYGNG-EDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCAN 332 (518)
Q Consensus 259 ~~~~l~ivG~g-~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~ 332 (518)
.++.+.+.|.. .++++++++++.+|..+ ....-..++.+|.... ........+|.+.|+|+|..+
T Consensus 7 ~g~~f~i~~~~~~~~~~l~~~i~~~GG~v--------~~~~~~~~thvI~~~~-~~~~~k~~~~~~~~i~iV~~~ 72 (78)
T PF00533_consen 7 EGCTFCISGFDSDEREELEQLIKKHGGTV--------SNSFSKKTTHVIVGNP-NKRTKKYKAAIANGIPIVSPD 72 (78)
T ss_dssp TTEEEEESSTSSSHHHHHHHHHHHTTEEE--------ESSSSTTSSEEEESSS-HCCCHHHHHHHHTTSEEEETH
T ss_pred CCEEEEEccCCCCCHHHHHHHHHHcCCEE--------EeecccCcEEEEeCCC-CCccHHHHHHHHCCCeEecHH
Confidence 46778883332 23688999999998654 1222345566664443 234667999999999999764
No 255
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=37.24 E-value=40 Score=30.34 Aligned_cols=32 Identities=25% Similarity=0.210 Sum_probs=23.4
Q ss_pred cEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|||+|++.+- +. | ..++++..++| |+||-++-
T Consensus 1 mKIaiIgAsG--~~-G-----s~i~~EA~~RG-HeVTAivR 32 (211)
T COG2910 1 MKIAIIGASG--KA-G-----SRILKEALKRG-HEVTAIVR 32 (211)
T ss_pred CeEEEEecCc--hh-H-----HHHHHHHHhCC-CeeEEEEe
Confidence 7899998753 21 2 24567777888 99999987
No 256
>PRK06932 glycerate dehydrogenase; Provisional
Probab=37.24 E-value=1.5e+02 Score=29.25 Aligned_cols=43 Identities=7% Similarity=0.105 Sum_probs=29.6
Q ss_pred CCChHHHHhhcCeeEe--cCCCCC---CchHHHHHHHcCCeEEeeCCC
Q 010098 292 RDHADPIFHDYKVFLN--PSTTDV---VCTATAEALAMGKIVVCANHP 334 (518)
Q Consensus 292 ~~~~~~l~~~adv~v~--pS~~E~---~~~~~lEAma~G~PVV~t~~g 334 (518)
+.+.+++++.||++++ |...|+ ++-..++.|--|.-+|-+..|
T Consensus 188 ~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG 235 (314)
T PRK06932 188 YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRG 235 (314)
T ss_pred cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCc
Confidence 3467899999997664 444444 667788888777767766553
No 257
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=36.62 E-value=3.3e+02 Score=24.69 Aligned_cols=30 Identities=17% Similarity=0.079 Sum_probs=21.2
Q ss_pred hcCeeEecCCCCCCchHHHHHHHcCCeEEee
Q 010098 301 DYKVFLNPSTTDVVCTATAEALAMGKIVVCA 331 (518)
Q Consensus 301 ~adv~v~pS~~E~~~~~~lEAma~G~PVV~t 331 (518)
.=|+.|.....+. ..++.||.-+|+|+|+-
T Consensus 127 ~Pdlviv~~~~~~-~~ai~Ea~~l~IP~I~i 156 (193)
T cd01425 127 LPDLVIVLDPRKE-HQAIREASKLGIPVIAI 156 (193)
T ss_pred CCCEEEEeCCccc-hHHHHHHHHcCCCEEEE
Confidence 3355444433222 77899999999999998
No 258
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=36.04 E-value=1.7e+02 Score=22.33 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhcC---CcEEEEEeCCCChHHHHHHHHHcCCeE-EEeCCCCChHHHHhhcCeeEecC
Q 010098 244 YEELLGLLNIYHKELA---GLEMDLYGNGEDFDQIQRAAKKLKLVV-RVYPGRDHADPIFHDYKVFLNPS 309 (518)
Q Consensus 244 ~~~ll~a~~~l~~~~~---~~~l~ivG~g~~~~~l~~~~~~~~l~v-~~~~~~~~~~~l~~~adv~v~pS 309 (518)
-...+..+.++.++++ +++++.+...++.++.++..++.+..- .+.........+.+.+++--.|+
T Consensus 16 c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~iP~ 85 (95)
T PF13905_consen 16 CKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGINGIPT 85 (95)
T ss_dssp HHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-TSSSE
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCCcCCE
Confidence 3444455555545554 799999998777889999988885542 22223233447777776554443
No 259
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=35.79 E-value=52 Score=31.11 Aligned_cols=45 Identities=20% Similarity=0.170 Sum_probs=33.2
Q ss_pred CCccccEEEEEeec--c---CCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQQHIAIFTTA--S---LPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~rI~ivt~~--~---~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|++.++++|+|.+. | .+...|+..-...+++.|.+.| ++|++..-
T Consensus 4 m~~~~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lg-F~V~~~~n 53 (243)
T cd00032 4 MNSKRRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLG-YEVEVKNN 53 (243)
T ss_pred CCCCCCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCC-CEEEEeCC
Confidence 67766777777755 2 3466787777778889999998 99988743
No 260
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=35.61 E-value=2.6e+02 Score=27.56 Aligned_cols=76 Identities=20% Similarity=0.160 Sum_probs=37.8
Q ss_pred HhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChH------HHH--------hhcCeeEecCCCCCCchHHHHH
Q 010098 256 KELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHAD------PIF--------HDYKVFLNPSTTDVVCTATAEA 321 (518)
Q Consensus 256 ~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~------~l~--------~~adv~v~pS~~E~~~~~~lEA 321 (518)
+..||.-++|-|.-.-....+...+.+|+.+.-.+|.+..+ ..+ ....+.|.-.+. ++-.++|+
T Consensus 73 ~lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~GwD--y~~~~~e~ 150 (337)
T COG2247 73 ELNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVYGWD--YADALMEL 150 (337)
T ss_pred hhCCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEeccc--cHHHHHHH
Confidence 44555444333332235566666667777665555443333 122 222344443332 12278888
Q ss_pred HHcC-CeEEeeCC
Q 010098 322 LAMG-KIVVCANH 333 (518)
Q Consensus 322 ma~G-~PVV~t~~ 333 (518)
|--| +||+.++.
T Consensus 151 ~k~~~~p~~~~n~ 163 (337)
T COG2247 151 MKEGIVPVILKNT 163 (337)
T ss_pred HhcCcceeEeccc
Confidence 8888 55665544
No 261
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=35.54 E-value=60 Score=25.97 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=23.2
Q ss_pred HHHhhcCeeEecCCCCCC-chHHHHHHHcCCeEEeeCCCC
Q 010098 297 PIFHDYKVFLNPSTTDVV-CTATAEALAMGKIVVCANHPS 335 (518)
Q Consensus 297 ~l~~~adv~v~pS~~E~~-~~~~lEAma~G~PVV~t~~g~ 335 (518)
+.+..+++.+...-.+.. .....+|-+.|+||-+.|.+.
T Consensus 56 ~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~D~p~ 95 (103)
T PF13241_consen 56 EDLDGADLVFAATDDPELNEAIYADARARGILVNVVDDPE 95 (103)
T ss_dssp GGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEETT-CC
T ss_pred HHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEECCCcC
Confidence 446677766655433333 333455666999999999875
No 262
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=35.52 E-value=3.4e+02 Score=28.16 Aligned_cols=103 Identities=12% Similarity=0.110 Sum_probs=60.7
Q ss_pred EEEEEeec-ccCCHHHHHHH-HHHHHHhcCCcEEEEEeCCCChHH----------------------------HHHHHH-
Q 010098 232 AYYIGRMV-WSKGYEELLGL-LNIYHKELAGLEMDLYGNGEDFDQ----------------------------IQRAAK- 280 (518)
Q Consensus 232 il~vGr~~-~~Kg~~~ll~a-~~~l~~~~~~~~l~ivG~g~~~~~----------------------------l~~~~~- 280 (518)
|+.+|... ...|-+.++.+ +..|+++.|++.++++-..|+... +++...
T Consensus 3 i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v~S~~P~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 82 (426)
T PRK10017 3 LLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPVSSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVKKVLRR 82 (426)
T ss_pred EEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEEEEecCccchhhhcccccccchhhhhhhhcccccccchhHHHHHHh
Confidence 34455443 36788877766 467788899999999987666533 111111
Q ss_pred ------------HcCCeEEEeC--CCCChHHHHhhcCeeEecC---CCCCCchH----HHHHHHcCCeEEeeCCC
Q 010098 281 ------------KLKLVVRVYP--GRDHADPIFHDYKVFLNPS---TTDVVCTA----TAEALAMGKIVVCANHP 334 (518)
Q Consensus 281 ------------~~~l~v~~~~--~~~~~~~l~~~adv~v~pS---~~E~~~~~----~lEAma~G~PVV~t~~g 334 (518)
..|+.-.+.- ...+....++.||++|.-. ..|.+|.. ++-|..+|+|++....+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gqs 157 (426)
T PRK10017 83 RYQHQVLLSRVTDTGKLRNIAIAQGFTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGHS 157 (426)
T ss_pred hhhHHHHHhhhccccccccccchhhHHHHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECCc
Confidence 0011000000 1113336789999999863 34544432 45678899999998775
No 263
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=35.46 E-value=4e+02 Score=25.38 Aligned_cols=113 Identities=8% Similarity=0.013 Sum_probs=73.6
Q ss_pred eecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC--------------hHHHHHHHHHcCCeEEE-eCCCCChHHHHhh
Q 010098 237 RMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED--------------FDQIQRAAKKLKLVVRV-YPGRDHADPIFHD 301 (518)
Q Consensus 237 r~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~--------------~~~l~~~~~~~~l~v~~-~~~~~~~~~l~~~ 301 (518)
....-..-+.+++.+..+++. ++.++.-|.-.. ...+.+..+++|+.+.- .....+++.+...
T Consensus 21 GPC~vEs~e~~~~~a~~~~~~--g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e~ 98 (250)
T PRK13397 21 GPCSIESYDHIRLAASSAKKL--GYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMSERQLEEAYDY 98 (250)
T ss_pred ccCccCCHHHHHHHHHHHHHc--CCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHhc
Confidence 444455667778888776655 466666664111 26677778888887442 2344566666667
Q ss_pred cCeeEecCCCCCCchHHHHHH-HcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHhCC
Q 010098 302 YKVFLNPSTTDVVCTATAEAL-AMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEE 365 (518)
Q Consensus 302 adv~v~pS~~E~~~~~~lEAm-a~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~ 365 (518)
+|++=.||. +..-..+++++ ..|+||+.+..-. .+++++..+++.+.+.-
T Consensus 99 vdilqIgs~-~~~n~~LL~~va~tgkPVilk~G~~-------------~t~~e~~~A~e~i~~~G 149 (250)
T PRK13397 99 LDVIQVGAR-NMQNFEFLKTLSHIDKPILFKRGLM-------------ATIEEYLGALSYLQDTG 149 (250)
T ss_pred CCEEEECcc-cccCHHHHHHHHccCCeEEEeCCCC-------------CCHHHHHHHHHHHHHcC
Confidence 899999985 23335677766 5799999885411 36788888888887543
No 264
>PLN02208 glycosyltransferase family protein
Probab=34.95 E-value=49 Score=34.52 Aligned_cols=39 Identities=41% Similarity=0.723 Sum_probs=28.0
Q ss_pred CCccccEEEEEeeccCCcccccccch-HHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQQHIAIFTTASLPWLTGTAVNP-LFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~rI~ivt~~~~P~~~G~~~~~-~~~a~~L~~~gg~~V~vi~~ 46 (518)
|..+ .||++| |+..-+-+.+ +.+|+.|+.+| ++||++++
T Consensus 1 ~~~~-~hvv~~-----P~paqGHi~P~l~LAk~La~~G-~~VT~vtt 40 (442)
T PLN02208 1 MEPK-FHAFMF-----PWFAFGHMIPFLHLANKLAEKG-HRVTFLLP 40 (442)
T ss_pred CCCC-CEEEEe-----cCccccHHHHHHHHHHHHHhCC-CEEEEEec
Confidence 4555 688877 4433334444 67889999998 99999987
No 265
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=34.94 E-value=1.2e+02 Score=24.28 Aligned_cols=39 Identities=8% Similarity=0.100 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCC--hHHHHHHHHHcCCeE
Q 010098 248 LGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLVV 286 (518)
Q Consensus 248 l~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~~~l~v 286 (518)
.+.+.++.+.+|+.+++++|+..+ .+-..++++++.-.+
T Consensus 52 ~~~i~~i~~~fP~~kfiLIGDsgq~DpeiY~~ia~~~P~~i 92 (100)
T PF09949_consen 52 RDNIERILRDFPERKFILIGDSGQHDPEIYAEIARRFPGRI 92 (100)
T ss_pred HHHHHHHHHHCCCCcEEEEeeCCCcCHHHHHHHHHHCCCCE
Confidence 445566667889999999998332 456677777765443
No 266
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=34.93 E-value=1.3e+02 Score=28.63 Aligned_cols=43 Identities=21% Similarity=0.280 Sum_probs=32.7
Q ss_pred CCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCC
Q 010098 292 RDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP 334 (518)
Q Consensus 292 ~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g 334 (518)
.++.++++..+|+.+.-|..+...-.+..|+..|+|||+...|
T Consensus 51 ~~dl~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvigttG 93 (257)
T PRK00048 51 TDDLEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTG 93 (257)
T ss_pred cCCHHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 4677777888998886665555555678899999999987544
No 267
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.92 E-value=3.7e+02 Score=27.46 Aligned_cols=156 Identities=11% Similarity=0.151 Sum_probs=87.3
Q ss_pred EEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeC-CCC------hHHHHHHHHHcCCeEE-EeCCCCChH-------HH
Q 010098 234 YIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGN-GED------FDQIQRAAKKLKLVVR-VYPGRDHAD-------PI 298 (518)
Q Consensus 234 ~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~-g~~------~~~l~~~~~~~~l~v~-~~~~~~~~~-------~l 298 (518)
|.|.....+-.....+.+.+.+++ ++.++|+-. |.. .+++.+..+..+.+.. +...-.--+ .+
T Consensus 159 ~ygsyte~dpv~ia~egv~~fKke--~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aF 236 (483)
T KOG0780|consen 159 FYGSYTEADPVKIASEGVDRFKKE--NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAF 236 (483)
T ss_pred eEecccccchHHHHHHHHHHHHhc--CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHH
Confidence 566666777777777888777766 577777643 222 2444555444444322 211111111 22
Q ss_pred HhhcC--eeEecCCCCC---CchHHHHHHHcCCeEEeeCCCC-ccccccC-CcEEe-----eCCHHHHHHHHHHHHhCCC
Q 010098 299 FHDYK--VFLNPSTTDV---VCTATAEALAMGKIVVCANHPS-NDFFKQF-PNCRT-----YDGRNGFVEATLKALAEEP 366 (518)
Q Consensus 299 ~~~ad--v~v~pS~~E~---~~~~~lEAma~G~PVV~t~~g~-~e~i~~~-~~g~~-----~~d~~~l~~~i~~ll~~~~ 366 (518)
=...| ..|.+-. +| -|-++---.|.++||+--..|- -+-++.. +--++ -.|.+.|.+.+.++..+..
T Consensus 237 k~~vdvg~vIlTKl-DGhakGGgAlSaVaaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGDi~glvek~~ev~~~d~ 315 (483)
T KOG0780|consen 237 KETVDVGAVILTKL-DGHAKGGGALSAVAATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGDIEGLVEKVQEVGKDDA 315 (483)
T ss_pred HHhhccceEEEEec-ccCCCCCceeeehhhhCCCEEEEecCccccccCCCChHHHHHHHhccccHHHHHHHHHHHhhhhH
Confidence 22334 2344421 11 2333333356899999887774 3333222 22222 2499999999999985555
Q ss_pred CCCChHHH-hcCCHHHHHHHHHHHHHh
Q 010098 367 AQPTDAQT-HQLSWESATERFLQVAEL 392 (518)
Q Consensus 367 ~~l~~~~~-~~~sw~~~~~~~~~~y~~ 392 (518)
.++-++-. -+|+.....+++..+...
T Consensus 316 ~el~~kl~~gkFtlrd~y~Qfq~imkm 342 (483)
T KOG0780|consen 316 KELVEKLKQGKFTLRDFYDQFQNIMKM 342 (483)
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHhh
Confidence 44444444 688888888888887764
No 268
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=34.55 E-value=75 Score=26.60 Aligned_cols=35 Identities=23% Similarity=0.160 Sum_probs=25.2
Q ss_pred cEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|||++..+.. +.......+.+.|.+.| ++|+++.+
T Consensus 1 k~i~l~vtGs-----~~~~~~~~~l~~L~~~g-~~v~vv~S 35 (129)
T PF02441_consen 1 KRILLGVTGS-----IAAYKAPDLLRRLKRAG-WEVRVVLS 35 (129)
T ss_dssp -EEEEEE-SS-----GGGGGHHHHHHHHHTTT-SEEEEEES
T ss_pred CEEEEEEECH-----HHHHHHHHHHHHHhhCC-CEEEEEEC
Confidence 5787777754 22455677889999997 99999877
No 269
>PLN00414 glycosyltransferase family protein
Probab=34.52 E-value=51 Score=34.43 Aligned_cols=39 Identities=38% Similarity=0.662 Sum_probs=28.4
Q ss_pred CCccccEEEEEeeccCCcccccccch-HHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQQHIAIFTTASLPWLTGTAVNP-LFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~rI~ivt~~~~P~~~G~~~~~-~~~a~~L~~~gg~~V~vi~~ 46 (518)
|.++ .||++| |+..-+-+++ +.+++.|+.+| ++||++++
T Consensus 1 ~~~~-~HVvlv-----PfpaqGHi~PmL~LAk~Las~G-~~VT~vtt 40 (446)
T PLN00414 1 MGSK-FHAFMY-----PWFGFGHMIPYLHLANKLAEKG-HRVTFFLP 40 (446)
T ss_pred CCCC-CEEEEe-----cCcccchHHHHHHHHHHHHhCC-CEEEEEeC
Confidence 5566 688887 4433334444 67889999998 99999988
No 270
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=34.29 E-value=6e+02 Score=27.12 Aligned_cols=76 Identities=11% Similarity=0.027 Sum_probs=42.0
Q ss_pred CcEEEEEeCCCC-h---HHHHHHHHHcCC----eEEE-eCCCCChH----HHHhhcCeeEecCC-----CCCCchHHHHH
Q 010098 260 GLEMDLYGNGED-F---DQIQRAAKKLKL----VVRV-YPGRDHAD----PIFHDYKVFLNPST-----TDVVCTATAEA 321 (518)
Q Consensus 260 ~~~l~ivG~g~~-~---~~l~~~~~~~~l----~v~~-~~~~~~~~----~l~~~adv~v~pS~-----~E~~~~~~lEA 321 (518)
.+++-++|.-.+ . ..+.+.....+. .+.+ +...++.. +.+..+|.+++|.- .++.-..+-+|
T Consensus 289 ~v~IalVGKY~~~~daY~SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G~~~~~g~i~ai~~a 368 (525)
T TIGR00337 289 EVTIGIVGKYVELKDSYLSVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFGERGVEGKILAIKYA 368 (525)
T ss_pred CcEEEEEeCCcCCHHHHHHHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCCChhhcChHHHHHHH
Confidence 488999998433 2 233333333343 2222 12222221 34677898887742 23333345666
Q ss_pred HHcCCeEEeeCCCC
Q 010098 322 LAMGKIVVCANHPS 335 (518)
Q Consensus 322 ma~G~PVV~t~~g~ 335 (518)
...|+|++..-.|.
T Consensus 369 ~e~~iP~LGIClG~ 382 (525)
T TIGR00337 369 RENNIPFLGICLGM 382 (525)
T ss_pred HHcCCCEEEEcHHH
Confidence 77999999887764
No 271
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=34.19 E-value=4.9e+02 Score=26.02 Aligned_cols=114 Identities=15% Similarity=0.070 Sum_probs=70.1
Q ss_pred EEeecccCCHHHHHHHHHHHHHhcCCcEEEE-------------EeCCCC-hHHHHHHHHHcCCeEEE-eCCCCChHHHH
Q 010098 235 IGRMVWSKGYEELLGLLNIYHKELAGLEMDL-------------YGNGED-FDQIQRAAKKLKLVVRV-YPGRDHADPIF 299 (518)
Q Consensus 235 vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i-------------vG~g~~-~~~l~~~~~~~~l~v~~-~~~~~~~~~l~ 299 (518)
++....-..-+.+++.+..+++..- ++.. -|-|.+ ...+.+.+++.|+.+.- .....+++.+.
T Consensus 97 IAGPCsiEs~e~~~~~A~~lk~~ga--~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~ 174 (335)
T PRK08673 97 IAGPCSVESEEQILEIARAVKEAGA--QILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREETGLPIVTEVMDPRDVELVA 174 (335)
T ss_pred EEecCccCCHHHHHHHHHHHHHhch--hhccCcEecCCCCCcccccccHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHH
Confidence 4444555677788888888776642 2221 222222 25566777888887443 23445555565
Q ss_pred hhcCeeEecCC-CCCCchHHHHHHHcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHhC
Q 010098 300 HDYKVFLNPST-TDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAE 364 (518)
Q Consensus 300 ~~adv~v~pS~-~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~~ 364 (518)
..+|++-.+|. ...++ -+-++...|+||+.+..-+ .+.+++..+++.+.+.
T Consensus 175 ~~vd~lqIgAr~~~N~~-LL~~va~~~kPViLk~G~~-------------~ti~E~l~A~e~i~~~ 226 (335)
T PRK08673 175 EYVDILQIGARNMQNFD-LLKEVGKTNKPVLLKRGMS-------------ATIEEWLMAAEYILAE 226 (335)
T ss_pred HhCCeEEECcccccCHH-HHHHHHcCCCcEEEeCCCC-------------CCHHHHHHHHHHHHHc
Confidence 66899888886 33333 2455566899999986521 2566777777777653
No 272
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=34.03 E-value=2.3e+02 Score=25.21 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcC
Q 010098 246 ELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMG 325 (518)
Q Consensus 246 ~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G 325 (518)
.-++.+..+++++|+.++.++=+.+....+..+ .+.+++++.+.+.+.|...+-.++.+-|.++.|
T Consensus 84 yT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W--------------~~~~~i~~~~~l~~~~~~~~ISST~IR~~l~~g 149 (174)
T PRK08887 84 TTYALLTRLQELYPEADLTFVIGPDNFLKFAKF--------------YKADEITQRWTVMACPEKVPIRSTDIRNALQNG 149 (174)
T ss_pred chHHHHHHHHHHCCCCeEEEEEccchHHHHHHh--------------CCHHHHHhhCeEEEeCCCCCcCHHHHHHHHHcC
Confidence 344666666677887666444333444554443 235678888888888765666777788888877
Q ss_pred Ce
Q 010098 326 KI 327 (518)
Q Consensus 326 ~P 327 (518)
.+
T Consensus 150 ~~ 151 (174)
T PRK08887 150 KD 151 (174)
T ss_pred CC
Confidence 65
No 273
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=33.98 E-value=1.4e+02 Score=31.08 Aligned_cols=89 Identities=15% Similarity=0.110 Sum_probs=53.5
Q ss_pred ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhh--cCeeEecCCCCCCchH
Q 010098 240 WSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPSTTDVVCTA 317 (518)
Q Consensus 240 ~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~--adv~v~pS~~E~~~~~ 317 (518)
-.+|++.|.+...+++ .+.+.+.+.....++++.....+....++.+.+...++... +|+.|+.-..-.--..
T Consensus 91 ag~Ni~lL~~q~~~f~-----p~~v~v~d~~~~~~l~~~l~~~~~~~~vl~G~egl~~la~~~evDiVV~AIvG~aGL~p 165 (454)
T PLN02696 91 AGSNVTLLADQVRKFK-----PKLVAVRNESLVDELKEALADLDDKPEIIPGEEGIVEVARHPEAVTVVTGIVGCAGLKP 165 (454)
T ss_pred CCCCHHHHHHHHHHhC-----CCEEEEcCHHHHHHHHHhhcCCCCCcEEEECHHHHHHHHcCCCCCEEEEeCccccchHH
Confidence 3567887777775543 34566665333444444332111134566666777777774 4788777543222334
Q ss_pred HHHHHHcCCeEEeeCC
Q 010098 318 TAEALAMGKIVVCANH 333 (518)
Q Consensus 318 ~lEAma~G~PVV~t~~ 333 (518)
.++|+.+|+.|...+-
T Consensus 166 Tl~AIkaGK~VALANK 181 (454)
T PLN02696 166 TVAAIEAGKDIALANK 181 (454)
T ss_pred HHHHHHCCCcEEEecH
Confidence 5999999999888765
No 274
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=33.96 E-value=5.5e+02 Score=26.53 Aligned_cols=89 Identities=12% Similarity=0.039 Sum_probs=54.5
Q ss_pred cEEEEEeCC---CChHHHHHHHHHcCCeEE-EeCCCCChHHHHhhc--CeeEecCCCCCCchHHHHHH--HcCCeEEeeC
Q 010098 261 LEMDLYGNG---EDFDQIQRAAKKLKLVVR-VYPGRDHADPIFHDY--KVFLNPSTTDVVCTATAEAL--AMGKIVVCAN 332 (518)
Q Consensus 261 ~~l~ivG~g---~~~~~l~~~~~~~~l~v~-~~~~~~~~~~l~~~a--dv~v~pS~~E~~~~~~lEAm--a~G~PVV~t~ 332 (518)
-.+.|+|.- .+..+++++.+..|+++. .+.+-...+++-+.. .+-+..+... +..+.|.| -.|+|-+...
T Consensus 173 ~~VNiiG~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~eei~~~~~A~lniv~~~~~--~~~~a~~Le~~fGiP~~~~~ 250 (421)
T cd01976 173 YDVNIIGDYNIGGDAWASRILLEEMGLRVVAQWSGDGTLNEMENAHKAKLNLIHCYRS--MNYIARMMEEKYGIPWMEYN 250 (421)
T ss_pred CeEEEEecCCCCccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEEEECcHH--HHHHHHHHHHHhCCcEEecc
Confidence 467777752 245789999999999976 455556677665544 4433332221 23456666 3899988863
Q ss_pred CCCccccccCCcEEeeCCHHHHHHHHHHHHh
Q 010098 333 HPSNDFFKQFPNCRTYDGRNGFVEATLKALA 363 (518)
Q Consensus 333 ~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~ 363 (518)
+ + | .++.+++.+.|.+++.
T Consensus 251 -p----~-----G--i~~t~~~l~~ia~~~g 269 (421)
T cd01976 251 -F----F-----G--PTKIAESLRKIAAYFD 269 (421)
T ss_pred -c----C-----C--HHHHHHHHHHHHHHhC
Confidence 2 0 0 1355677777777654
No 275
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=33.54 E-value=2.7e+02 Score=28.79 Aligned_cols=112 Identities=16% Similarity=0.158 Sum_probs=67.9
Q ss_pred cCCHHHHHHHHHH-HHHh---cCCcEEEEEeCCC----ChHHHHHHHHHcCCeEEEeCC-------------------CC
Q 010098 241 SKGYEELLGLLNI-YHKE---LAGLEMDLYGNGE----DFDQIQRAAKKLKLVVRVYPG-------------------RD 293 (518)
Q Consensus 241 ~Kg~~~ll~a~~~-l~~~---~~~~~l~ivG~g~----~~~~l~~~~~~~~l~v~~~~~-------------------~~ 293 (518)
..|.+..++++-+ +... ...-++.++|... +..+++++.++.|+++....+ -.
T Consensus 132 ~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~ 211 (428)
T cd01965 132 ETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGT 211 (428)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCC
Confidence 4678877777653 3221 1234567776532 468999999999999775432 24
Q ss_pred ChHHHHhhcCeeEecCCCCCCchHHHHHHH--cCCeEEeeCCC-CccccccCCcEEeeCCHHHHHHHHHHHHhC
Q 010098 294 HADPIFHDYKVFLNPSTTDVVCTATAEALA--MGKIVVCANHP-SNDFFKQFPNCRTYDGRNGFVEATLKALAE 364 (518)
Q Consensus 294 ~~~~l~~~adv~v~pS~~E~~~~~~lEAma--~G~PVV~t~~g-~~e~i~~~~~g~~~~d~~~l~~~i~~ll~~ 364 (518)
..+++-+..+.-++-.....++..+.|+|. +|+|-+....+ |. ++.+++.++|.+++..
T Consensus 212 ~~e~i~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP~~~~~~p~G~------------~~t~~~l~~l~~~~g~ 273 (428)
T cd01965 212 TLEEIRDAGNAKATIALGEYSGRKAAKALEEKFGVPYILFPTPIGL------------KATDEFLRALSKLSGK 273 (428)
T ss_pred cHHHHHHhccCcEEEEEChhhhHHHHHHHHHHHCCCeeecCCCcCh------------HHHHHHHHHHHHHHCC
Confidence 556555533322222222235677788776 89999877653 21 2456777777776654
No 276
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=33.33 E-value=1.8e+02 Score=29.63 Aligned_cols=77 Identities=14% Similarity=0.173 Sum_probs=54.3
Q ss_pred CCcEEEEEeCCCChHHHHHHHHHcCCeEEEeC----------CCCChHHHHhhcCeeE--ecCCCC----C---CchHHH
Q 010098 259 AGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYP----------GRDHADPIFHDYKVFL--NPSTTD----V---VCTATA 319 (518)
Q Consensus 259 ~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~----------~~~~~~~l~~~adv~v--~pS~~E----~---~~~~~l 319 (518)
.+-++-|+|-|.--..+.+.++.+|.++..+. ...+.+++++.||+.+ .|...+ + ++-..+
T Consensus 115 ~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l 194 (378)
T PRK15438 115 HDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLI 194 (378)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHH
Confidence 35678888887766777777777787766532 1235669999999777 454333 3 556788
Q ss_pred HHHHcCCeEEeeCCCC
Q 010098 320 EALAMGKIVVCANHPS 335 (518)
Q Consensus 320 EAma~G~PVV~t~~g~ 335 (518)
++|--|.-+|-+..|+
T Consensus 195 ~~mk~gailIN~aRG~ 210 (378)
T PRK15438 195 RSLKPGAILINACRGA 210 (378)
T ss_pred hcCCCCcEEEECCCch
Confidence 8888888888887764
No 277
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=33.30 E-value=34 Score=24.18 Aligned_cols=16 Identities=38% Similarity=0.407 Sum_probs=14.2
Q ss_pred hHHHHHHHcCCeEEee
Q 010098 316 TATAEALAMGKIVVCA 331 (518)
Q Consensus 316 ~~~lEAma~G~PVV~t 331 (518)
-.+.|++-+|.||+|-
T Consensus 15 ~kI~esav~G~pVvAL 30 (58)
T PF11238_consen 15 DKIAESAVMGTPVVAL 30 (58)
T ss_pred hHHHHHHhcCceeEee
Confidence 4689999999999985
No 278
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.25 E-value=4e+02 Score=24.69 Aligned_cols=61 Identities=13% Similarity=-0.046 Sum_probs=33.6
Q ss_pred hcCeeEe-cCCCCCCchHHHHHHHcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHhCC
Q 010098 301 DYKVFLN-PSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEE 365 (518)
Q Consensus 301 ~adv~v~-pS~~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~ 365 (518)
.+|.++. |...+... .+-++...|+|||..+....+ ...+.+..++.+....+...+++..
T Consensus 55 ~vdgiii~~~~~~~~~-~~~~~~~~~ipvV~~~~~~~~---~~~~~v~~d~~~~~~~~~~~l~~~g 116 (268)
T cd06289 55 GVAGIILCPAAGTSPD-LLKRLAESGIPVVLVAREVAG---APFDYVGPDNAAGARLATEHLISLG 116 (268)
T ss_pred CCCEEEEeCCCCccHH-HHHHHHhcCCCEEEEeccCCC---CCCCEEeecchHHHHHHHHHHHHCC
Confidence 3575544 43222222 456677889999998654221 1122333466666666666666553
No 279
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=33.12 E-value=2.8e+02 Score=28.52 Aligned_cols=86 Identities=17% Similarity=0.111 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeE-EEeCCCCChH---HHHhhc--CeeEecCCCCCCchHH
Q 010098 245 EELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVV-RVYPGRDHAD---PIFHDY--KVFLNPSTTDVVCTAT 318 (518)
Q Consensus 245 ~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v-~~~~~~~~~~---~l~~~a--dv~v~pS~~E~~~~~~ 318 (518)
..+...++++++++|++.+++.-.-+.-. +...+.++-.+ +.+.++|... .+++.. |+.|+ ..+|-+|+.+
T Consensus 63 ~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~--e~a~~~~~~~v~h~YlP~D~~~~v~rFl~~~~P~l~Ii-~EtElWPnli 139 (419)
T COG1519 63 LAALPLVRALRERFPDLRILVTTMTPTGA--ERAAALFGDSVIHQYLPLDLPIAVRRFLRKWRPKLLII-METELWPNLI 139 (419)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecCccHH--HHHHHHcCCCeEEEecCcCchHHHHHHHHhcCCCEEEE-EeccccHHHH
Confidence 34555566667889999988876434322 22233444333 3456666544 555544 45443 3578899999
Q ss_pred HHHHHcCCeEEeeCC
Q 010098 319 AEALAMGKIVVCANH 333 (518)
Q Consensus 319 lEAma~G~PVV~t~~ 333 (518)
.|+-..|+|++.-+.
T Consensus 140 ~e~~~~~~p~~LvNa 154 (419)
T COG1519 140 NELKRRGIPLVLVNA 154 (419)
T ss_pred HHHHHcCCCEEEEee
Confidence 999999999887643
No 280
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=32.96 E-value=6e+02 Score=26.69 Aligned_cols=109 Identities=10% Similarity=-0.002 Sum_probs=63.2
Q ss_pred cCCHHHHHHHHHHH-HHh-------cCCcEEEEEeCC---CChHHHHHHHHHcCCeEEE-eCCCCChHHHHhhc--CeeE
Q 010098 241 SKGYEELLGLLNIY-HKE-------LAGLEMDLYGNG---EDFDQIQRAAKKLKLVVRV-YPGRDHADPIFHDY--KVFL 306 (518)
Q Consensus 241 ~Kg~~~ll~a~~~l-~~~-------~~~~~l~ivG~g---~~~~~l~~~~~~~~l~v~~-~~~~~~~~~l~~~a--dv~v 306 (518)
..|.+...+++.+. ... .++-.+.|+|+- .+..+++.+.+.+|+.+.. +.+-..++++-... .+-+
T Consensus 180 ~~G~~~a~~ai~~~l~~~~~~~~~~~~~~~VNiiG~~~~~gd~~eik~lL~~~Gi~v~~~~sg~~t~~~i~~~~~A~lni 259 (466)
T TIGR01282 180 SLGHHIANDAVRDWVLGKGDKEKFEPTPYDVAIIGDYNIGGDAWESRILLEEIGLRVVAQWSGDGTLNEMENAPKAKLNL 259 (466)
T ss_pred hHHHHHHHHHHHHHhhccccccccCCCCCeEEEEecCCCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcccCCEEE
Confidence 34666666665432 211 113567777752 2457899999999998664 55555666665544 4433
Q ss_pred ecCCCCCCchHHHHHHH--cCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHh
Q 010098 307 NPSTTDVVCTATAEALA--MGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALA 363 (518)
Q Consensus 307 ~pS~~E~~~~~~lEAma--~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~ 363 (518)
..+.. .+..+.|.|- +|+|.+....=| ..+.+++.+.|.+++.
T Consensus 260 v~~~~--~~~~~A~~Le~~fGiP~~~~~~~G------------i~~T~~~Lr~ia~~~g 304 (466)
T TIGR01282 260 IHCYR--SMNYISRHMEEKYGIPWMEYNFFG------------PTKIAESLRKIAEFFD 304 (466)
T ss_pred EEChH--HHHHHHHHHHHHhCCceEeCCCCC------------HHHHHHHHHHHHHHHC
Confidence 33222 1235666664 799988753101 1356677777777664
No 281
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=32.80 E-value=85 Score=26.80 Aligned_cols=90 Identities=16% Similarity=0.223 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCeEEEeCCCCChH--HHHhh----cC-eeEecCCCCCCchHHHHHH-HcCCeEEeeCCC---Cccc---
Q 010098 273 DQIQRAAKKLKLVVRVYPGRDHAD--PIFHD----YK-VFLNPSTTDVVCTATAEAL-AMGKIVVCANHP---SNDF--- 338 (518)
Q Consensus 273 ~~l~~~~~~~~l~v~~~~~~~~~~--~l~~~----ad-v~v~pS~~E~~~~~~lEAm-a~G~PVV~t~~g---~~e~--- 338 (518)
+.+++.++++|+.+.++-.-.+-+ +.++. +| +.++|.-+-..+..+.+|+ +.++|+|=--.. .+|-
T Consensus 31 ~~l~~~a~~~g~~v~~~QSN~Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~~~~P~VEVHiSNi~aRE~fR~ 110 (140)
T cd00466 31 ALLRELAAELGVEVEFFQSNHEGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAAVSIPVIEVHISNIHAREEFRH 110 (140)
T ss_pred HHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHcCCCCEEEEecCCccccccccc
Confidence 455566666777777655332222 44443 34 7889987767789999996 468999865332 2433
Q ss_pred ---cccCCcEEeeC-CHHHHHHHHHHHH
Q 010098 339 ---FKQFPNCRTYD-GRNGFVEATLKAL 362 (518)
Q Consensus 339 ---i~~~~~g~~~~-d~~~l~~~i~~ll 362 (518)
+.+...|.+.. -.+...-++..++
T Consensus 111 ~S~is~~~~G~I~G~G~~gY~lAl~~~~ 138 (140)
T cd00466 111 HSVISPVATGVIAGLGADGYRLALEALA 138 (140)
T ss_pred ccccccceeEEEEeCCHHHHHHHHHHHH
Confidence 44455666654 6667777776655
No 282
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=32.80 E-value=1e+02 Score=29.05 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=32.1
Q ss_pred HHHHHHHHHhc--CCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhh
Q 010098 248 LGLLNIYHKEL--AGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD 301 (518)
Q Consensus 248 l~a~~~l~~~~--~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~ 301 (518)
..+|++++.++ |+++++++|+|.+.+ +.++.++....-.....+...++..
T Consensus 216 ~~cFe~I~~Rfg~p~~~f~~IGDG~eEe---~aAk~l~wPFw~I~~h~Dl~~l~~a 268 (274)
T TIGR01658 216 LQCFKWIKERFGHPKVRFCAIGDGWEEC---TAAQAMNWPFVKIDLHPDSSHRFPG 268 (274)
T ss_pred HHHHHHHHHHhCCCCceEEEeCCChhHH---HHHHhcCCCeEEeecCCCHHHhCcc
Confidence 45677776665 579999999998654 3456666653333444555554443
No 283
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=32.77 E-value=1.9e+02 Score=28.80 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=48.4
Q ss_pred cEEEEEeCCCChHHHHHHHHHcCCeEEEeC--------------CCCChHHHHhhcCeeE--ecCCCCCCchH---HHHH
Q 010098 261 LEMDLYGNGEDFDQIQRAAKKLKLVVRVYP--------------GRDHADPIFHDYKVFL--NPSTTDVVCTA---TAEA 321 (518)
Q Consensus 261 ~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~--------------~~~~~~~l~~~adv~v--~pS~~E~~~~~---~lEA 321 (518)
-++-|+|-|.--..+-+.++.+|.++..+. ..++.+++++.||+++ .|...|+.++- .+..
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~ 222 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAK 222 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhh
Confidence 355555555544555555555555544322 2356789999999665 46667775554 4444
Q ss_pred HHcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHH
Q 010098 322 LAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLK 360 (518)
Q Consensus 322 ma~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ 360 (518)
|--|.-.|-+.. |-++ |.++|.+++..
T Consensus 223 MK~gailIN~aR-----------G~vV-de~aL~~AL~~ 249 (324)
T COG0111 223 MKPGAILINAAR-----------GGVV-DEDALLAALDS 249 (324)
T ss_pred CCCCeEEEECCC-----------ccee-cHHHHHHHHHc
Confidence 444443333322 1122 56777777765
No 284
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=31.81 E-value=62 Score=31.88 Aligned_cols=36 Identities=33% Similarity=0.554 Sum_probs=27.2
Q ss_pred CCccccEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|++.+|||+|+.... +++ .++..|++.| |+|+++..
T Consensus 1 ~~~~~m~I~IiG~Ga---iG~------~lA~~L~~~g-~~V~~~~r 36 (313)
T PRK06249 1 MDSETPRIGIIGTGA---IGG------FYGAMLARAG-FDVHFLLR 36 (313)
T ss_pred CCCcCcEEEEECCCH---HHH------HHHHHHHHCC-CeEEEEEe
Confidence 777779999996532 222 5778888888 99999976
No 285
>PLN00016 RNA-binding protein; Provisional
Probab=31.69 E-value=66 Score=32.59 Aligned_cols=36 Identities=33% Similarity=0.405 Sum_probs=26.0
Q ss_pred cEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
++|+|+++.+ ||++.-=..+++.|.+.| |+|++++-
T Consensus 53 ~~VLVt~~~~----GatG~iG~~lv~~L~~~G-~~V~~l~R 88 (378)
T PLN00016 53 KKVLIVNTNS----GGHAFIGFYLAKELVKAG-HEVTLFTR 88 (378)
T ss_pred ceEEEEeccC----CCceeEhHHHHHHHHHCC-CEEEEEec
Confidence 6787764433 444444567889999998 99999976
No 286
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=31.63 E-value=83 Score=25.57 Aligned_cols=42 Identities=17% Similarity=0.092 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCC----hHHHHHHHHHcCCeEEEe
Q 010098 248 LGLLNIYHKELAGLEMDLYGNGED----FDQIQRAAKKLKLVVRVY 289 (518)
Q Consensus 248 l~a~~~l~~~~~~~~l~ivG~g~~----~~~l~~~~~~~~l~v~~~ 289 (518)
.+.+..+....|+..++++|.|.. ..++++..++.|+.+.+.
T Consensus 41 ~~~l~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m 86 (110)
T PF04430_consen 41 PEDLEELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVM 86 (110)
T ss_dssp THHHHHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE
T ss_pred HHHHHHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEE
Confidence 344444556677889999999876 478888888889887764
No 287
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=31.60 E-value=2.1e+02 Score=29.14 Aligned_cols=109 Identities=15% Similarity=0.154 Sum_probs=68.6
Q ss_pred ccCCHHHHHHHHHHHHHh------cCCcEEEEEeCCC----ChHHHHHHHHHcCCeEEEeCC-CCChHHHHh--hcCeeE
Q 010098 240 WSKGYEELLGLLNIYHKE------LAGLEMDLYGNGE----DFDQIQRAAKKLKLVVRVYPG-RDHADPIFH--DYKVFL 306 (518)
Q Consensus 240 ~~Kg~~~ll~a~~~l~~~------~~~~~l~ivG~g~----~~~~l~~~~~~~~l~v~~~~~-~~~~~~l~~--~adv~v 306 (518)
...|.+..++++.+.... ...-.+.++|... +..+++++.++.|+++....+ -...+++-+ +|++-+
T Consensus 126 ~~~G~~~a~~~~~~~~~~~~~~~~~~~~~vNlig~~~~~~~d~~el~~ll~~~G~~v~~~~~~~~s~~~i~~~~~A~~nl 205 (399)
T cd00316 126 QSAGYDAAVKAIIDHLVGTAEPEETEPGSVNLIGGYNLGGGDLRELKRLLEEMGIRVNALFDGGTTVEELRELGNAKLNL 205 (399)
T ss_pred HHHHHHHHHHHHHHHHhcccCcCCCCCCcEEEECCCCCchhhHHHHHHHHHHcCCcEEEEcCCCCCHHHHHhhccCcEEE
Confidence 456788888777654332 1234677888643 558899999999999876544 366665555 444444
Q ss_pred ecCCCCCCchHHHHHHH--cCCeEEeeCCC-CccccccCCcEEeeCCHHHHHHHHHHHHh
Q 010098 307 NPSTTDVVCTATAEALA--MGKIVVCANHP-SNDFFKQFPNCRTYDGRNGFVEATLKALA 363 (518)
Q Consensus 307 ~pS~~E~~~~~~lEAma--~G~PVV~t~~g-~~e~i~~~~~g~~~~d~~~l~~~i~~ll~ 363 (518)
..+. .++..+.|.|. +|+|-+... + |. ++.+.+.+.|.+++.
T Consensus 206 v~~~--~~g~~~a~~l~~~~g~p~~~~~-p~G~------------~~t~~~l~~i~~~~g 250 (399)
T cd00316 206 VLCR--ESGLYLARYLEEKYGIPYILIN-PIGL------------EATDAFLRKLAELFG 250 (399)
T ss_pred EecH--hHHHHHHHHHHHHhCCCeEEeC-CcCH------------HHHHHHHHHHHHHhC
Confidence 4332 24677777774 899988875 3 21 234566666666554
No 288
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=31.60 E-value=3.7e+02 Score=25.80 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=38.1
Q ss_pred hcCCCCCcEEEEcC------CchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhh--hc
Q 010098 112 IIPDEEADIAVLEE------PEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARV--HC 182 (518)
Q Consensus 112 ~i~~~~~Dvi~~~~------~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a 182 (518)
.-+..++|+++++- .+...++.....+....+ --+..+|..+..|....+ ..+.+-...-.+.++.+ .+
T Consensus 128 ~a~~~~~Dv~iiEiGGTVGDIEs~pFlEAirQl~~~~G~~n~~~IHvtlVP~l~~~g--E~KTKPtQhSVk~Lr~~GI~P 205 (276)
T PF06418_consen 128 VAKKPEPDVVIIEIGGTVGDIESLPFLEAIRQLRNEVGRENVCFIHVTLVPYLKAAG--EQKTKPTQHSVKELRSIGIQP 205 (276)
T ss_dssp HHCCCT-SEEEEEEESETTSCCCHHHHHHHHHHHHHH-TTCEEEEEEEE--EETTTT--EE-HHHHHHHHHHHHHTT---
T ss_pred hcCCCCCCEEEEecCCcccccccccHHHHHHHHHHHhCcCcEEEEEEeeeeeeCCCC--ccCCccHHHHHHHHHhCCCCC
Confidence 33445799999873 345555544444555554 356777766655553322 12222222222333333 68
Q ss_pred cEEEEeChh
Q 010098 183 HKVIRLSAA 191 (518)
Q Consensus 183 d~vi~~S~~ 191 (518)
|.++|-|+.
T Consensus 206 DilvcRs~~ 214 (276)
T PF06418_consen 206 DILVCRSER 214 (276)
T ss_dssp SEEEEEESS
T ss_pred CEEEEcCCC
Confidence 999999843
No 289
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.55 E-value=1.1e+02 Score=29.78 Aligned_cols=143 Identities=13% Similarity=0.095 Sum_probs=77.5
Q ss_pred cccCCHHHHHHHHHHHHHhcCCcEEEEEeC---CCChHHHHHHHHHcCC---------e-EEEeCCCCChHHHHhhcCee
Q 010098 239 VWSKGYEELLGLLNIYHKELAGLEMDLYGN---GEDFDQIQRAAKKLKL---------V-VRVYPGRDHADPIFHDYKVF 305 (518)
Q Consensus 239 ~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~---g~~~~~l~~~~~~~~l---------~-v~~~~~~~~~~~l~~~adv~ 305 (518)
+...|+..++.++..+......+ ++.+. +-....+..+.++.|- + -.++.......++++.+|+.
T Consensus 238 ea~~nl~~il~slcal~~~~a~v--vfw~ai~~~lpl~~l~~l~e~~gWq~~ad~~~kdnc~l~lsqqsfadiLH~adaa 315 (412)
T COG4370 238 EAQTNLAVILGSLCALPAMFALV--VFWAAIAPELPLLLLWTLEERQGWQPLADRFGKDNCSLWLSQQSFADILHAADAA 315 (412)
T ss_pred HHHhhHHHHHHHHhhhHHHHHHH--HHHhccCcCCCHHHHHHHHHhcCcchhhhhhccCceEEEEeHHHHHHHHHHHHHH
Confidence 44779999999887766554331 11121 1122333333333321 1 22344556667888888875
Q ss_pred EecCCCCCCchHHHHHHHcCCeEEeeCCCCccccc---c------CCcEEeeC-CHHHHHHHHHHHHhCCCC--CCChHH
Q 010098 306 LNPSTTDVVCTATAEALAMGKIVVCANHPSNDFFK---Q------FPNCRTYD-GRNGFVEATLKALAEEPA--QPTDAQ 373 (518)
Q Consensus 306 v~pS~~E~~~~~~lEAma~G~PVV~t~~g~~e~i~---~------~~~g~~~~-d~~~l~~~i~~ll~~~~~--~l~~~~ 373 (518)
+-. -|+..=.|.-.|+|||....-|+.+.. . |..-.++. +..+-.....+++.|++. .+..++
T Consensus 316 lgm-----AGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~aq~a~~~~q~ll~dp~r~~air~nG 390 (412)
T COG4370 316 LGM-----AGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRPEAQAAAQAVQELLGDPQRLTAIRHNG 390 (412)
T ss_pred HHh-----ccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCCchhhHHHHHHHHhcChHHHHHHHhcc
Confidence 432 367778899999999999765533321 1 22222344 444444444558888875 444455
Q ss_pred HhcCCHHHHHHHHHH
Q 010098 374 THQLSWESATERFLQ 388 (518)
Q Consensus 374 ~~~~sw~~~~~~~~~ 388 (518)
+++..-.-++.++.+
T Consensus 391 qrRiGqaGaa~rIAe 405 (412)
T COG4370 391 QRRIGQAGAARRIAE 405 (412)
T ss_pred hhhccCcchHHHHHH
Confidence 544333334444333
No 290
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=31.54 E-value=60 Score=29.61 Aligned_cols=40 Identities=23% Similarity=0.244 Sum_probs=27.8
Q ss_pred CCccccEEEEEeeccCCcccccccc-hHHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQQHIAIFTTASLPWLTGTAVN-PLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~rI~ivt~~~~P~~~G~~~~-~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|..+++||++-.+.. .| +.. ...+++.|.+.| ++|.++.+
T Consensus 1 ~~l~~k~IllgVTGs----ia-a~k~a~~lir~L~k~G-~~V~vv~T 41 (196)
T PRK08305 1 MSLKGKRIGFGLTGS----HC-TYDEVMPEIEKLVDEG-AEVTPIVS 41 (196)
T ss_pred CCCCCCEEEEEEcCH----HH-HHHHHHHHHHHHHhCc-CEEEEEEC
Confidence 444457887766543 22 444 467789999998 99999977
No 291
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=31.27 E-value=3.4e+02 Score=23.23 Aligned_cols=70 Identities=17% Similarity=0.094 Sum_probs=49.4
Q ss_pred cCCcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeC-CCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEE
Q 010098 258 LAGLEMDLYGNGED-FDQIQRAAKKLKLVVRVYP-GRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVV 329 (518)
Q Consensus 258 ~~~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~-~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV 329 (518)
...-+++++|.+.. -+.+..+..+.|..+.... ...+.++..+.||+.+...-.. ++.--|-+.-|.-|+
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~--~~i~~~~ikpGa~Vi 97 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKP--EKVPTEWIKPGATVI 97 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCC--CccCHHHcCCCCEEE
Confidence 34578999998766 4566666666787777655 3447789999999998776433 334567777777766
No 292
>TIGR03630 arch_S17P archaeal ribosomal protein S17P. This model describes exclusively the archaeal ribosomal protein S17P. It excludes homologous ribosomal proteins S11 from eukaryotes and S17 from bacteria.
Probab=30.93 E-value=67 Score=25.80 Aligned_cols=40 Identities=25% Similarity=0.473 Sum_probs=27.9
Q ss_pred CCCCccccCcccCCCCcccceeee----eecceeeEEEEeeeEE
Q 010098 458 GLVTELGKGHCHRPNGSWFGSVLV----LVGSVIGVLFVKSVTL 497 (518)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 497 (518)
|+|-+.-...|.-|+-||.|.+.+ |+|.|+.--.-|++..
T Consensus 2 g~~~~~p~~~~~d~~cpf~g~l~irgk~l~G~VvS~Km~KTivV 45 (102)
T TIGR03630 2 GIPVKPPERECNDPKCPFHGHLKVRGQILEGVVVSDKMNKTVVV 45 (102)
T ss_pred CcccCCCCccccCCCCCccceeeeeeEEEEEEEEecCCCceEEE
Confidence 566666677899999999998865 5666665544454443
No 293
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=30.89 E-value=1.3e+02 Score=30.51 Aligned_cols=90 Identities=11% Similarity=0.077 Sum_probs=57.3
Q ss_pred cccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhh--cCeeEecCCCCCCch
Q 010098 239 VWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPSTTDVVCT 316 (518)
Q Consensus 239 ~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~--adv~v~pS~~E~~~~ 316 (518)
...+|++.|.+...+++ .+.+.+++......++......+...+++.+.+...++... +|+.|+....-.-=.
T Consensus 34 aa~~n~~~L~~q~~~f~-----p~~v~i~d~~~~~~l~~~l~~~~~~~~v~~G~~~l~~l~~~~~~D~vv~AivG~aGL~ 108 (389)
T TIGR00243 34 SAGKNVALMVEQILEFR-----PKFVAIDDEASLKDLKTMLQQQGSRTEVLVGEEGICEMAALEDVDQVMNAIVGAAGLL 108 (389)
T ss_pred EcCCCHHHHHHHHHHcC-----CCEEEEcCHHHHHHHHHHhhcCCCCcEEEECHHHHHHHHcCCCCCEEEEhhhcHhhHH
Confidence 45679999999886654 34566665433455554432113235667777777777774 588887754322234
Q ss_pred HHHHHHHcCCeEEeeCC
Q 010098 317 ATAEALAMGKIVVCANH 333 (518)
Q Consensus 317 ~~lEAma~G~PVV~t~~ 333 (518)
++++|+.+|+.+--.+-
T Consensus 109 pt~~Ai~~gk~iaLANK 125 (389)
T TIGR00243 109 PTLAAIRAGKTIALANK 125 (389)
T ss_pred HHHHHHHCCCcEEEech
Confidence 58899999999877654
No 294
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=30.61 E-value=1.1e+02 Score=26.30 Aligned_cols=90 Identities=18% Similarity=0.278 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCeEEEeCCCCChH--HHHh----hcC-eeEecCCCCCCchHHHHHHH-cCCeEEeeCCC---Ccccc--
Q 010098 273 DQIQRAAKKLKLVVRVYPGRDHAD--PIFH----DYK-VFLNPSTTDVVCTATAEALA-MGKIVVCANHP---SNDFF-- 339 (518)
Q Consensus 273 ~~l~~~~~~~~l~v~~~~~~~~~~--~l~~----~ad-v~v~pS~~E~~~~~~lEAma-~G~PVV~t~~g---~~e~i-- 339 (518)
+.+++.+.++|+.+.++-.-.+-+ +.++ .+| +.++|.-+-..+..+.+|++ .++|+|=--.. .+|-+
T Consensus 32 ~~~~~~a~~~g~~v~~~QSN~EGelid~I~~a~~~~dgiIINpga~thtS~Ai~DAl~~~~~P~vEVHiSNi~~RE~fR~ 111 (140)
T PF01220_consen 32 QKCKETAAELGVEVEFFQSNHEGELIDWIHEARDDVDGIIINPGAYTHTSIAIRDALKAISIPVVEVHISNIHAREEFRH 111 (140)
T ss_dssp HHHHHHHHHTTEEEEEEE-SSHHHHHHHHHHHTCTTSEEEEE-GGGGHT-HHHHHHHHCCTS-EEEEESS-GGGS-GGGG
T ss_pred HHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHhhCCEEEEccchhccccHHHHHHHHcCCCCEEEEEcCCccccccccc
Confidence 556666777777777655332222 3333 345 78899877778999999975 58998866433 24333
Q ss_pred ----ccCCcEEeeC-CHHHHHHHHHHHH
Q 010098 340 ----KQFPNCRTYD-GRNGFVEATLKAL 362 (518)
Q Consensus 340 ----~~~~~g~~~~-d~~~l~~~i~~ll 362 (518)
.....|.+.. -.+...-+++.++
T Consensus 112 ~S~~s~~~~g~I~G~G~~gY~lAl~al~ 139 (140)
T PF01220_consen 112 HSVISPVAVGVISGFGADGYLLALEALV 139 (140)
T ss_dssp --SSGGGSSEEEESSTTHHHHHHHHHHH
T ss_pred ccccccccEEEEEeCCHHHHHHHHHHHh
Confidence 3445666664 5566666666553
No 295
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=30.42 E-value=2.9e+02 Score=26.73 Aligned_cols=34 Identities=15% Similarity=0.040 Sum_probs=21.8
Q ss_pred hcCe-eEecCCCCCCchHHHHHHHcCCeEEeeCCC
Q 010098 301 DYKV-FLNPSTTDVVCTATAEALAMGKIVVCANHP 334 (518)
Q Consensus 301 ~adv-~v~pS~~E~~~~~~lEAma~G~PVV~t~~g 334 (518)
.+|. ++.|...+...-.+-++...|+|||+.+..
T Consensus 57 ~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~ 91 (303)
T cd01539 57 GVDLLAVNLVDPTAAQTVINKAKQKNIPVIFFNRE 91 (303)
T ss_pred CCCEEEEecCchhhHHHHHHHHHHCCCCEEEeCCC
Confidence 4564 444543333444567778899999998764
No 296
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=30.38 E-value=73 Score=31.05 Aligned_cols=41 Identities=12% Similarity=0.005 Sum_probs=29.7
Q ss_pred ccEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 5 QQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 5 ~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
++||++++....|...---.....+.+.|.+.| |+|.++-.
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g-~~v~~i~~ 44 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREAG-YDAHPIDP 44 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCC-CEEEEEec
Confidence 469999998877765432223366779999998 99999854
No 297
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=30.10 E-value=3.5e+02 Score=27.91 Aligned_cols=76 Identities=12% Similarity=0.154 Sum_probs=47.8
Q ss_pred cEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCC--CCCCchHHHH-HHHcCCeEEeeCCCCcc
Q 010098 261 LEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPST--TDVVCTATAE-ALAMGKIVVCANHPSND 337 (518)
Q Consensus 261 ~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~--~E~~~~~~lE-Ama~G~PVV~t~~g~~e 337 (518)
-++.|++. ..+.-++++++++.. ....++..+++..+|+.+..+. .-..+...+| ++.--...+..|.+-+.
T Consensus 203 ~~i~IaNR--T~erA~~La~~~~~~---~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPR 277 (414)
T COG0373 203 KKITIANR--TLERAEELAKKLGAE---AVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPR 277 (414)
T ss_pred CEEEEEcC--CHHHHHHHHHHhCCe---eecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCC
Confidence 56666664 567778888888832 2356788899999998887643 2224444444 44444446777777644
Q ss_pred cccc
Q 010098 338 FFKQ 341 (518)
Q Consensus 338 ~i~~ 341 (518)
.++.
T Consensus 278 die~ 281 (414)
T COG0373 278 DVEP 281 (414)
T ss_pred CCCc
Confidence 4444
No 298
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=29.60 E-value=3e+02 Score=26.34 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=44.9
Q ss_pred CcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCC
Q 010098 260 GLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP 334 (518)
Q Consensus 260 ~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g 334 (518)
+++++.+-+ .+.+..+++++.++.. ...+.++++..+|+.+..+..+...-...+++..|+.|++...+
T Consensus 26 ~~elv~v~d-~~~~~a~~~a~~~~~~-----~~~~~~ell~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~s~g 94 (265)
T PRK13304 26 NAELYAFYD-RNLEKAENLASKTGAK-----ACLSIDELVEDVDLVVECASVNAVEEVVPKSLENGKDVIIMSVG 94 (265)
T ss_pred CeEEEEEEC-CCHHHHHHHHHhcCCe-----eECCHHHHhcCCCEEEEcCChHHHHHHHHHHHHcCCCEEEEchH
Confidence 566655444 4455666666655431 23567777788998887665555445567788999999987553
No 299
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=29.47 E-value=4.4e+02 Score=24.08 Aligned_cols=60 Identities=17% Similarity=0.052 Sum_probs=34.1
Q ss_pred hcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHhC
Q 010098 301 DYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAE 364 (518)
Q Consensus 301 ~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~~ 364 (518)
.+|.++....... ...+-++...|+|||+.+....+ ......-.++.+....+...+.+.
T Consensus 55 ~~d~iii~~~~~~-~~~~~~~~~~~ipvv~~~~~~~~---~~~~~v~~d~~~~g~~~~~~l~~~ 114 (264)
T cd06267 55 RVDGIILAPSRLD-DELLEELAALGIPVVLVDRPLDG---LGVDSVGIDNRAGAYLAVEHLIEL 114 (264)
T ss_pred CcCEEEEecCCcc-hHHHHHHHHcCCCEEEecccccC---CCCCEEeeccHHHHHHHHHHHHHC
Confidence 5676665543322 22277788999999999776432 112222235566555555555543
No 300
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=28.99 E-value=1e+02 Score=27.42 Aligned_cols=74 Identities=9% Similarity=0.014 Sum_probs=38.5
Q ss_pred HHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhc---CCEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEE
Q 010098 109 ITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKF---RFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKV 185 (518)
Q Consensus 109 l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~---~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v 185 (518)
....+.+.+||+|+++.|...-.+...+.+.+-+ +..+..+-+.- +....+. --++++.+ ||.+
T Consensus 84 ~~~il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~a----Rv~~lSl--------TGklly~~-aD~f 150 (170)
T PF08660_consen 84 SLRILRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESFA----RVKTLSL--------TGKLLYPF-ADRF 150 (170)
T ss_pred HHHHHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEeee----ecCCCch--------HHHHHHHh-CCEE
Confidence 3445667889999999986653222222222111 43333333221 1111111 12333444 8999
Q ss_pred EEeChhhhcc
Q 010098 186 IRLSAATQEY 195 (518)
Q Consensus 186 i~~S~~~~~~ 195 (518)
+++-+.+++.
T Consensus 151 ~VQW~~l~~~ 160 (170)
T PF08660_consen 151 IVQWEELAEK 160 (170)
T ss_pred EEcCHHHHhH
Confidence 9999888874
No 301
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=28.69 E-value=2.8e+02 Score=23.48 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=41.8
Q ss_pred cccCCHH--HHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCC-CChHHHHhhcCee
Q 010098 239 VWSKGYE--ELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGR-DHADPIFHDYKVF 305 (518)
Q Consensus 239 ~~~Kg~~--~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~-~~~~~l~~~adv~ 305 (518)
...|+.+ ..++++........+.-+++-|++ +...+-+.+++.|..+.+.+.. ....++...||=|
T Consensus 78 ~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~-Df~~~i~~lr~~G~~V~v~~~~~~~s~~L~~~~d~f 146 (149)
T cd06167 78 SGKKGVDVALAIDALELAYKRRIDTIVLVSGDS-DFVPLVERLRELGKRVIVVGFEAKTSRELRKAADRF 146 (149)
T ss_pred CcccCccHHHHHHHHHHhhhcCCCEEEEEECCc-cHHHHHHHHHHcCCEEEEEccCccChHHHHHhCCcc
Confidence 3455554 556788777666455555566665 4444555557779888888866 4444777777743
No 302
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=28.41 E-value=4e+02 Score=25.02 Aligned_cols=40 Identities=23% Similarity=0.016 Sum_probs=24.9
Q ss_pred ccEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCC
Q 010098 5 QQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLS 49 (518)
Q Consensus 5 ~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~ 49 (518)
+++|++|....-...-| .-.....++++| ++|++++.+..
T Consensus 10 ~~~vL~v~aHPDDe~~g----~ggtla~~~~~G-~~V~v~~lT~G 49 (237)
T COG2120 10 PLRVLVVFAHPDDEEIG----CGGTLAKLAARG-VEVTVVCLTLG 49 (237)
T ss_pred CCcEEEEecCCcchhhc----cHHHHHHHHHCC-CeEEEEEccCC
Confidence 47898887654332112 112445567787 99999988553
No 303
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.27 E-value=4.3e+02 Score=24.70 Aligned_cols=64 Identities=19% Similarity=0.044 Sum_probs=30.8
Q ss_pred hcCeeEe-cCCCCCCchHHHHHHHcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHhC
Q 010098 301 DYKVFLN-PSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAE 364 (518)
Q Consensus 301 ~adv~v~-pS~~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~~ 364 (518)
..|.+|. |...+...-.+-++...|.|||..+....+.-......++..|..+....+.+.+.+
T Consensus 57 ~vdgiii~~~~~~~~~~~l~~~~~~~ipvV~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~ 121 (271)
T cd06312 57 KPDGIVVTIPDPDALDPAIKRAVAAGIPVISFNAGDPKYKELGALAYVGQDEYAAGEAAGERLAE 121 (271)
T ss_pred CCCEEEEeCCChHHhHHHHHHHHHCCCeEEEeCCCCCccccccceEEeccChHHHHHHHHHHHHH
Confidence 4565444 432222333455667789999999764321101112233433445544544444433
No 304
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=28.25 E-value=4e+02 Score=24.29 Aligned_cols=107 Identities=9% Similarity=0.041 Sum_probs=58.2
Q ss_pred HHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEe
Q 010098 251 LNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVC 330 (518)
Q Consensus 251 ~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~ 330 (518)
+..|.+. +.+++++.. ...+++.++++... +.+.. ..-.+..+..+|+++..+-.+..-..+.+....|++|-+
T Consensus 26 a~~Ll~~--ga~V~VIs~-~~~~~l~~l~~~~~--i~~~~-~~~~~~~l~~adlViaaT~d~elN~~i~~~a~~~~lvn~ 99 (202)
T PRK06718 26 AITLLKY--GAHIVVISP-ELTENLVKLVEEGK--IRWKQ-KEFEPSDIVDAFLVIAATNDPRVNEQVKEDLPENALFNV 99 (202)
T ss_pred HHHHHHC--CCeEEEEcC-CCCHHHHHHHhCCC--EEEEe-cCCChhhcCCceEEEEcCCCHHHHHHHHHHHHhCCcEEE
Confidence 3344444 367777764 22355666655422 33322 222235577889888776655556667766678999888
Q ss_pred eCCCC------ccccccCCcEEeeC---CHHHHHHHHHHHHh
Q 010098 331 ANHPS------NDFFKQFPNCRTYD---GRNGFVEATLKALA 363 (518)
Q Consensus 331 t~~g~------~e~i~~~~~g~~~~---d~~~l~~~i~~ll~ 363 (518)
.|.+. +-++..+.--+-+. ..-.++..|.+-++
T Consensus 100 ~d~~~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~ie 141 (202)
T PRK06718 100 ITDAESGNVVFPSALHRGKLTISVSTDGASPKLAKKIRDELE 141 (202)
T ss_pred CCCCccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHHHHHH
Confidence 87753 44444433323231 23355555555443
No 305
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=28.23 E-value=2.7e+02 Score=27.58 Aligned_cols=42 Identities=12% Similarity=0.152 Sum_probs=29.2
Q ss_pred CChHHHHhhcCeeEe--cCCCCC---CchHHHHHHHcCCeEEeeCCC
Q 010098 293 DHADPIFHDYKVFLN--PSTTDV---VCTATAEALAMGKIVVCANHP 334 (518)
Q Consensus 293 ~~~~~l~~~adv~v~--pS~~E~---~~~~~lEAma~G~PVV~t~~g 334 (518)
.+.+++++.||+.++ |...|+ ++-..++.|--|.-+|-+..|
T Consensus 192 ~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG 238 (323)
T PRK15409 192 CDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRG 238 (323)
T ss_pred cCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCc
Confidence 467899999996554 444443 666788888777777766553
No 306
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=27.91 E-value=5.1e+02 Score=24.32 Aligned_cols=119 Identities=17% Similarity=0.252 Sum_probs=57.0
Q ss_pred EEEEEeeccCCccccccc--chHHHHHHHHhcCCeeEEEEeccCCc--------ccccccCCCCcccCC--hhHHHHHHH
Q 010098 7 HIAIFTTASLPWLTGTAV--NPLFRAAYLAKDGERRVTLVIPWLSL--------IHQKQVYPGNITFAS--PKEQEAYVR 74 (518)
Q Consensus 7 rI~ivt~~~~P~~~G~~~--~~~~~a~~L~~~gg~~V~vi~~~~~~--------~~~~~~~p~~~~~~~--~~~~~~~~~ 74 (518)
+|.+||+. .+|++- ..-.+...|++.| ++|.++-..... .+++.+|. -+.... -...+..++
T Consensus 3 ~iIVvTSG----KGGVGKTTttAnig~aLA~~G-kKv~liD~DiGLRNLDlimGlE~RiVYd-~vdVi~g~~~l~QALIk 76 (272)
T COG2894 3 RIIVVTSG----KGGVGKTTTTANIGTALAQLG-KKVVLIDFDIGLRNLDLIMGLENRIVYD-LVDVIEGEATLNQALIK 76 (272)
T ss_pred eEEEEecC----CCCcCccchhHHHHHHHHHcC-CeEEEEecCcCchhhhhhhcccceeeee-ehhhhcCccchhhHhhc
Confidence 44455542 244444 4456779999999 999998552211 12333443 000000 000112222
Q ss_pred HhhhcccCCCCCCcccccCcccccccccccc--hhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhc
Q 010098 75 WWLEDRTGFTSTFDTRFYPGKFAADKKSILA--VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKF 142 (518)
Q Consensus 75 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~--~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~ 142 (518)
.. .+ -.+...|....+....+.+ +..+.+-+++..+|.|++-+|... ..|+..+-.+
T Consensus 77 DK-----r~---~nL~lLPAsQtrdKdalt~E~v~~vv~eL~~~~fDyIi~DsPAGI---E~G~~~A~~~ 135 (272)
T COG2894 77 DK-----RL---ENLFLLPASQTRDKDALTPEGVKKVVNELKAMDFDYIIIDSPAGI---EQGFKNAVYF 135 (272)
T ss_pred cc-----cC---CceEecccccccCcccCCHHHHHHHHHHHHhcCCCEEEecCcchH---HHHHHhhhhc
Confidence 11 11 1122334333333333322 445555566678999999999766 4444444443
No 307
>PLN02562 UDP-glycosyltransferase
Probab=27.72 E-value=84 Score=32.83 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=27.4
Q ss_pred CCccc-cEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQ-QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~-~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|++.+ .||+++.- |- .|=-.-++.+++.|+.+| ++||++++
T Consensus 1 ~~~~~~~HVVlvPf---Pa-qGHi~PmL~LAk~Las~G-~~VT~vtt 42 (448)
T PLN02562 1 MKVTQRPKIILVPY---PA-QGHVTPMLKLASAFLSRG-FEPVVITP 42 (448)
T ss_pred CCCCCCcEEEEEcC---cc-ccCHHHHHHHHHHHHhCC-CEEEEEeC
Confidence 55432 48888832 21 342333467889999988 99999988
No 308
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=27.63 E-value=1.7e+02 Score=24.00 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCC----hHHHHHHHHHcCCeEEEeC
Q 010098 248 LGLLNIYHKELAGLEMDLYGNGED----FDQIQRAAKKLKLVVRVYP 290 (518)
Q Consensus 248 l~a~~~l~~~~~~~~l~ivG~g~~----~~~l~~~~~~~~l~v~~~~ 290 (518)
.+.+..+....|+..++++|.|.. ..++++..++.|+.+.+..
T Consensus 42 ~~~l~~l~~~~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~ 88 (114)
T cd05125 42 EESLSLFELLEPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVD 88 (114)
T ss_pred HHHHHHHHhccCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEEC
Confidence 445555555667889999999875 3677777788888877644
No 309
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=27.60 E-value=4.5e+02 Score=23.91 Aligned_cols=77 Identities=10% Similarity=0.040 Sum_probs=49.7
Q ss_pred CCcEEEEEeCCCC-----hHHHHHHHHHcCCeEEEeCC-----CCChHHHHhhcCeeEecC---------CCCC-CchHH
Q 010098 259 AGLEMDLYGNGED-----FDQIQRAAKKLKLVVRVYPG-----RDHADPIFHDYKVFLNPS---------TTDV-VCTAT 318 (518)
Q Consensus 259 ~~~~l~ivG~g~~-----~~~l~~~~~~~~l~v~~~~~-----~~~~~~l~~~adv~v~pS---------~~E~-~~~~~ 318 (518)
.+.++.++..... .+.+.+..+++|..+..+.. .++..+.+..||+.+++- +.+. .--.+
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i 107 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAI 107 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHH
Confidence 3567777765431 34556666777877553332 234448889999877762 1222 33357
Q ss_pred HHHHHcCCeEEeeCCCC
Q 010098 319 AEALAMGKIVVCANHPS 335 (518)
Q Consensus 319 lEAma~G~PVV~t~~g~ 335 (518)
.+....|+|++.+..|.
T Consensus 108 ~~~~~~G~v~~G~SAGA 124 (210)
T cd03129 108 LKRVARGVVIGGTSAGA 124 (210)
T ss_pred HHHHHcCCeEEEcCHHH
Confidence 88888999999998875
No 310
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=27.54 E-value=3.9e+02 Score=25.90 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=29.8
Q ss_pred CCCChHHHHh--hcCeeEecCC-CCCCchHHHHHHH--cCCeEEee
Q 010098 291 GRDHADPIFH--DYKVFLNPST-TDVVCTATAEALA--MGKIVVCA 331 (518)
Q Consensus 291 ~~~~~~~l~~--~adv~v~pS~-~E~~~~~~lEAma--~G~PVV~t 331 (518)
...+..+.++ ..|++|-.|. .-.|.--+++.|+ |..|+|-.
T Consensus 93 ~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFa 138 (279)
T cd05312 93 EGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFA 138 (279)
T ss_pred cCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 3457778888 7788888885 4557778888887 46777655
No 311
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=27.14 E-value=5.2e+02 Score=24.14 Aligned_cols=64 Identities=11% Similarity=-0.043 Sum_probs=35.7
Q ss_pred HHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHhCCC
Q 010098 298 IFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEEP 366 (518)
Q Consensus 298 l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~~ 366 (518)
.....|.+|.-+... +-.+-+.-..|+|||.-+....+ .....+..++.++...+...+++...
T Consensus 49 ~~~~vdgii~~~~~~--~~~~~~~~~~~~pvV~~~~~~~~---~~~~~v~~D~~~a~~~~~~~l~~~g~ 112 (270)
T cd01544 49 ILEDVDGIIAIGKFS--QEQLAKLAKLNPNLVFVDSNPAP---DGFDSVVPDFEQAVEKALDYLLELGH 112 (270)
T ss_pred hccCcCEEEEecCCC--HHHHHHHHhhCCCEEEECCCCCC---CCCCEEEECHHHHHHHHHHHHHHcCC
Confidence 345667554322211 12344556779999999764321 11233445777777777777775443
No 312
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=26.98 E-value=3.9e+02 Score=23.43 Aligned_cols=53 Identities=9% Similarity=0.067 Sum_probs=36.1
Q ss_pred cCCcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeC-CCCChHHHHhhcCeeEecCC
Q 010098 258 LAGLEMDLYGNGED-FDQIQRAAKKLKLVVRVYP-GRDHADPIFHDYKVFLNPST 310 (518)
Q Consensus 258 ~~~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~-~~~~~~~l~~~adv~v~pS~ 310 (518)
...-+.+++|.+.. -.-+..+..+.+..+.... ...+.++..+.||+.|...-
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~~ADIVVsa~G 88 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITRRADIVVSAVG 88 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHTTSSEEEE-SS
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceeeeccEEeeeec
Confidence 44578999998765 4556666777787787765 44688899999999997753
No 313
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=26.69 E-value=3.6e+02 Score=24.96 Aligned_cols=114 Identities=10% Similarity=0.097 Sum_probs=62.0
Q ss_pred ccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCh-HHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEe
Q 010098 229 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDF-DQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLN 307 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~-~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~ 307 (518)
..+|+|+|.....--- .|++.++++++..-.+.++.+|...+. +.+.+.+..++.. + ..+++...
T Consensus 108 ~riVvFvGSpi~e~ek-eLv~~akrlkk~~Vaidii~FGE~~~~~e~l~~fida~N~~----~---------~gshlv~V 173 (259)
T KOG2884|consen 108 QRIVVFVGSPIEESEK-ELVKLAKRLKKNKVAIDIINFGEAENNTEKLFEFIDALNGK----G---------DGSHLVSV 173 (259)
T ss_pred eEEEEEecCcchhhHH-HHHHHHHHHHhcCeeEEEEEeccccccHHHHHHHHHHhcCC----C---------CCceEEEe
Confidence 5678888875432211 778888888877555666667764443 5566666544421 1 12334444
Q ss_pred cCCCCCCchHHHHHHHcCCeEEeeCCCC--cccccc---CCcEEeeCCHHHHHHHHHHHH
Q 010098 308 PSTTDVVCTATAEALAMGKIVVCANHPS--NDFFKQ---FPNCRTYDGRNGFVEATLKAL 362 (518)
Q Consensus 308 pS~~E~~~~~~lEAma~G~PVV~t~~g~--~e~i~~---~~~g~~~~d~~~l~~~i~~ll 362 (518)
|. ..+++-.-.-.||+.-+.|+ .....+ ..-|+..++.-+++.+|+--+
T Consensus 174 pp------g~~L~d~l~ssPii~ge~g~a~~~~~a~g~~f~fgvdp~~DPELAlALRlSM 227 (259)
T KOG2884|consen 174 PP------GPLLSDALLSSPIIQGEDGGAAAGLGANGMDFEFGVDPEDDPELALALRLSM 227 (259)
T ss_pred CC------CccHHHHhhcCceeccCcccccccccccccccccCCCcccCHHHHHHHHhhH
Confidence 43 12455555667888887654 222211 112333333347777776533
No 314
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=26.66 E-value=4.8e+02 Score=23.54 Aligned_cols=103 Identities=6% Similarity=0.001 Sum_probs=58.7
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChH---HHHh--hcCeeEecCC-CC---CCchHHHHHHH---cCCe
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHAD---PIFH--DYKVFLNPST-TD---VVCTATAEALA---MGKI 327 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~---~l~~--~adv~v~pS~-~E---~~~~~~lEAma---~G~P 327 (518)
.++.++.+.+. ...++...+..+. ........+.. +.+. ..|++++-.. .+ .-|..+++.+. -++|
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~~~-~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~ 82 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIEW-VNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLS 82 (216)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCc
Confidence 56667666443 3445555554332 12222222222 3333 3577666432 22 25677777764 3456
Q ss_pred EEee-CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhC
Q 010098 328 VVCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 364 (518)
Q Consensus 328 VV~t-~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~ 364 (518)
||.- +... .+.+..|..|++.. +++++.++|..++..
T Consensus 83 iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g 126 (216)
T PRK10840 83 IIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG 126 (216)
T ss_pred EEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCC
Confidence 6554 4433 45577889999874 899999999988764
No 315
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=26.62 E-value=4.9e+02 Score=24.71 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=20.8
Q ss_pred hcCeeE-ecCCCCCCchHHHHHHHcCCeEEeeCCCC
Q 010098 301 DYKVFL-NPSTTDVVCTATAEALAMGKIVVCANHPS 335 (518)
Q Consensus 301 ~adv~v-~pS~~E~~~~~~lEAma~G~PVV~t~~g~ 335 (518)
..|.++ .|...+...-.+-++...|+|||+.+...
T Consensus 55 ~vdgiii~~~~~~~~~~~l~~l~~~~ipvV~~~~~~ 90 (288)
T cd01538 55 GVDVLVIAPVDGEALASAVEKAADAGIPVIAYDRLI 90 (288)
T ss_pred CCCEEEEecCChhhHHHHHHHHHHCCCCEEEECCCC
Confidence 456444 34333333334556778899999997653
No 316
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=26.58 E-value=3.2e+02 Score=25.44 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=24.3
Q ss_pred ChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEe
Q 010098 294 HADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVC 330 (518)
Q Consensus 294 ~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~ 330 (518)
+..+.+..+|++|+.|..-.|+-..++.|+ ..|+|.
T Consensus 90 ~l~~~l~~~dvlIgaT~~G~~~~~~l~~m~-~~~ivf 125 (226)
T cd05311 90 TLKEALKGADVFIGVSRPGVVKKEMIKKMA-KDPIVF 125 (226)
T ss_pred CHHHHHhcCCEEEeCCCCCCCCHHHHHhhC-CCCEEE
Confidence 455677889999998863335556777776 345554
No 317
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=26.31 E-value=3.9e+02 Score=26.05 Aligned_cols=64 Identities=22% Similarity=0.136 Sum_probs=41.6
Q ss_pred hhcC-eeEecCCCCCCchHHHHHHHcCCeEEeeCCCCccccccCCcEEee-CCHH---HHHHHHHHHHhCC
Q 010098 300 HDYK-VFLNPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTY-DGRN---GFVEATLKALAEE 365 (518)
Q Consensus 300 ~~ad-v~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~-~d~~---~l~~~i~~ll~~~ 365 (518)
+..| +.|.|...+.+.-.+-+|...|+|||+.|.....- .....++- +|.. ..++.+.+.+...
T Consensus 90 ~~~daIiv~~~d~~~~~~~v~~a~~aGIpVv~~d~~~~~~--~~~~~~vg~dn~~~G~~~a~~l~~~~~~~ 158 (322)
T COG1879 90 QGVDAIIINPVDPDALTPAVKKAKAAGIPVVTVDSDIPGP--GDRVAYVGSDNYKAGRLAAEYLAKALGGK 158 (322)
T ss_pred cCCCEEEEcCCChhhhHHHHHHHHHCCCcEEEEecCCCCC--CceeEEEecCcHHHHHHHHHHHHHHhCCC
Confidence 4556 56667778888999999999999999999875221 22333343 3322 3455666655544
No 318
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=26.27 E-value=3.1e+02 Score=26.13 Aligned_cols=40 Identities=13% Similarity=0.104 Sum_probs=31.1
Q ss_pred CCChHHHHh--hcCeeEecCC-CCCCchHHHHHHH--cCCeEEee
Q 010098 292 RDHADPIFH--DYKVFLNPST-TDVVCTATAEALA--MGKIVVCA 331 (518)
Q Consensus 292 ~~~~~~l~~--~adv~v~pS~-~E~~~~~~lEAma--~G~PVV~t 331 (518)
..+..+.++ ..|++|-.|. .-.|.--++++|+ |-.|+|-.
T Consensus 95 ~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFa 139 (254)
T cd00762 95 SGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFA 139 (254)
T ss_pred cCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEE
Confidence 357778888 8889998886 5558888999998 56787766
No 319
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=26.19 E-value=2.1e+02 Score=24.39 Aligned_cols=90 Identities=18% Similarity=0.269 Sum_probs=54.3
Q ss_pred HHHHHHHHHcCCeEEEeCCCCChH--HHHh----hc-CeeEecCCCCCCchHHHHHH-HcCCeEEeeCCC---Cccccc-
Q 010098 273 DQIQRAAKKLKLVVRVYPGRDHAD--PIFH----DY-KVFLNPSTTDVVCTATAEAL-AMGKIVVCANHP---SNDFFK- 340 (518)
Q Consensus 273 ~~l~~~~~~~~l~v~~~~~~~~~~--~l~~----~a-dv~v~pS~~E~~~~~~lEAm-a~G~PVV~t~~g---~~e~i~- 340 (518)
+.+++.+.+++.++.++-.-.+-+ +.++ ++ ++.++|.-+-..+.++.+|+ +..+|+|=--.. .+|.+.
T Consensus 32 ~~~~~~a~~~g~~v~~~QSN~Eg~Lid~Ihea~~~~~~IvINpga~THTSvAlrDAi~av~iP~vEVHlSNihaRE~FRh 111 (146)
T COG0757 32 ADLEEEAAKLGVEVEFRQSNHEGELIDWIHEARGKAGDIVINPGAYTHTSVALRDAIAAVSIPVVEVHLSNIHAREEFRH 111 (146)
T ss_pred HHHHHHHHHcCceEEEEecCchHHHHHHHHHhhccCCeEEEcCccchhhHHHHHHHHHhcCCCEEEEEecCchhcccccc
Confidence 556667777777777654322222 3333 32 38999988888899999996 457999865433 244443
Q ss_pred -----cCCcEEeeC-CHHHHHHHHHHHH
Q 010098 341 -----QFPNCRTYD-GRNGFVEATLKAL 362 (518)
Q Consensus 341 -----~~~~g~~~~-d~~~l~~~i~~ll 362 (518)
+-..|.++. -+....-+++.+.
T Consensus 112 hS~~s~~a~GvI~GlG~~GY~lAl~~l~ 139 (146)
T COG0757 112 HSYTSPVAKGVICGLGAQGYLLALRALV 139 (146)
T ss_pred cccccchhceeEecCcHHHHHHHHHHHH
Confidence 334555554 5555555554443
No 320
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=26.05 E-value=5.3e+02 Score=23.81 Aligned_cols=60 Identities=12% Similarity=-0.109 Sum_probs=32.6
Q ss_pred hcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHhCC
Q 010098 301 DYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEE 365 (518)
Q Consensus 301 ~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~ 365 (518)
..|.++..+.. .+....+++..|.|||..+..... ........++.+....+...+++..
T Consensus 55 ~vdgiii~~~~--~~~~~~~~~~~~ipvv~~~~~~~~---~~~~~v~~d~~~~g~~~~~~l~~~g 114 (267)
T cd06284 55 QADGIILLDGS--LPPTALTALAKLPPIVQACEYIPG---LAVPSVSIDNVAAARLAVDHLISLG 114 (267)
T ss_pred CCCEEEEecCC--CCHHHHHHHhcCCCEEEEecccCC---CCcceEEecccHHHHHHHHHHHHcC
Confidence 45755443221 122256777789999987543211 1122233466666666777776653
No 321
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=25.97 E-value=8e+02 Score=25.90 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=24.1
Q ss_pred EEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEe
Q 010098 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVI 45 (518)
Q Consensus 7 rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~ 45 (518)
|-.|||..-..- -|-++..-.++.-|..+| ++|+++=
T Consensus 2 KyIfVTGGVvSs-lGKGi~aaSlg~lLk~rG-~~Vt~~K 38 (533)
T COG0504 2 KYIFVTGGVVSS-LGKGITAASLGRLLKARG-LKVTIQK 38 (533)
T ss_pred eEEEEeCCeecc-cccHHHHHHHHHHHHHCC-ceEEEEe
Confidence 445565443222 244566677788888888 9999984
No 322
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=25.94 E-value=5.4e+02 Score=23.91 Aligned_cols=60 Identities=17% Similarity=0.043 Sum_probs=32.9
Q ss_pred hcCeeEecCC-CCCCchHHHHHHHcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHh
Q 010098 301 DYKVFLNPST-TDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALA 363 (518)
Q Consensus 301 ~adv~v~pS~-~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~ 363 (518)
..|.+|..+. .+...-.+-++-..|.|||+.+....+ ........++.+.-..+...+++
T Consensus 55 ~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~~~~~~~~---~~~~~V~~d~~~~g~~~~~~l~~ 115 (273)
T cd06305 55 KVDAIIIQHGRAEVLKPWVKRALDAGIPVVAFDVDSDN---PKVNNTTQDDYSLARLSLDQLVK 115 (273)
T ss_pred CCCEEEEecCChhhhHHHHHHHHHcCCCEEEecCCCCC---CccceeeechHHHHHHHHHHHHH
Confidence 5676655432 222233355677889999999775321 11222334565555555556655
No 323
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=25.51 E-value=4.9e+02 Score=25.10 Aligned_cols=88 Identities=19% Similarity=0.080 Sum_probs=50.7
Q ss_pred ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecC---CCCCCch
Q 010098 240 WSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPS---TTDVVCT 316 (518)
Q Consensus 240 ~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS---~~E~~~~ 316 (518)
..-|=+.+++++ +.+..++.+++++...+ ++. .+.+|..-.-.....+....+..+|++|... ..+..+.
T Consensus 10 ~N~GDe~~l~~~--l~~l~~~~~~~v~s~~p--~~~---~~~~~v~~~~r~~~~~~~~~l~~~D~vI~gGG~l~~d~~~~ 82 (298)
T TIGR03609 10 GNLGDEALLAAL--LRELPPGVEPTVLSNDP--AET---AKLYGVEAVNRRSLLAVLRALRRADVVIWGGGSLLQDVTSF 82 (298)
T ss_pred CCcchHHHHHHH--HHhcCCCCeEEEecCCh--HHH---HhhcCceEEccCCHHHHHHHHHHCCEEEECCcccccCCccc
Confidence 345778888887 34445678888876543 222 2334443111112223446788999888763 2232211
Q ss_pred --------HHHHHHHcCCeEEeeCCC
Q 010098 317 --------ATAEALAMGKIVVCANHP 334 (518)
Q Consensus 317 --------~~lEAma~G~PVV~t~~g 334 (518)
.+.-|..+|+|++....+
T Consensus 83 ~~~~~~~~~~~~a~~~~k~~~~~g~g 108 (298)
T TIGR03609 83 RSLLYYLGLMRLARLFGKPVILWGQG 108 (298)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEecc
Confidence 234566789999988665
No 324
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=25.47 E-value=2.4e+02 Score=25.04 Aligned_cols=9 Identities=11% Similarity=0.180 Sum_probs=4.7
Q ss_pred ccEEEEeCh
Q 010098 182 CHKVIRLSA 190 (518)
Q Consensus 182 ad~vi~~S~ 190 (518)
+|.+|+-..
T Consensus 35 ~dViIsRG~ 43 (176)
T PF06506_consen 35 ADVIISRGG 43 (176)
T ss_dssp -SEEEEEHH
T ss_pred CeEEEECCH
Confidence 566666553
No 325
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=25.42 E-value=1.2e+02 Score=24.92 Aligned_cols=35 Identities=26% Similarity=0.211 Sum_probs=22.1
Q ss_pred cEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|+|+++..+.-|..-| ....+.|.+.| ++|+-+.|
T Consensus 1 ksiAVvGaS~~~~~~g-----~~v~~~l~~~G-~~v~~Vnp 35 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFG-----YRVLRNLKAAG-YEVYPVNP 35 (116)
T ss_dssp -EEEEET--SSTTSHH-----HHHHHHHHHTT--EEEEEST
T ss_pred CEEEEEcccCCCCChH-----HHHHHHHHhCC-CEEEEECC
Confidence 5789998776544333 44557788887 99999977
No 326
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=25.40 E-value=6.6e+02 Score=25.36 Aligned_cols=92 Identities=14% Similarity=0.162 Sum_probs=55.5
Q ss_pred HhcCCcEEEEEeCCCCh-----HHHHHHHHHcCCeEE-EeCCCCChH----HHHhh----cCeeEecCC-CCCCchHHHH
Q 010098 256 KELAGLEMDLYGNGEDF-----DQIQRAAKKLKLVVR-VYPGRDHAD----PIFHD----YKVFLNPST-TDVVCTATAE 320 (518)
Q Consensus 256 ~~~~~~~l~ivG~g~~~-----~~l~~~~~~~~l~v~-~~~~~~~~~----~l~~~----adv~v~pS~-~E~~~~~~lE 320 (518)
++.|+-+++++|-|-+- ......+++.++++- ++....-++ .++.. -|-|+.|.+ +--.|....|
T Consensus 132 ~~nPdk~VVF~avGFETTaP~~A~~i~~a~~~~~~Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHVs~I~G~~~y~ 211 (369)
T TIGR00075 132 KENPDRKVVFFAIGFETTAPTTASTLLSAKAEDINNFFFLSAHRLVPPAVEALLENPAVQIDAFLAPGHVSTIIGAKPYA 211 (369)
T ss_pred HHCCCCeEEEEecCchhccHHHHHHHHHHHHcCCCcEEEEEeccccHHHHHHHHcCCCCCccEEEecCEEEEEeccchhH
Confidence 45778888888877652 333334455555533 333333222 44432 379999976 3446777777
Q ss_pred HHH--cCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHh
Q 010098 321 ALA--MGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALA 363 (518)
Q Consensus 321 Ama--~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~ 363 (518)
.++ .|+|+|.+-. .+.++..+|..+++
T Consensus 212 ~l~~~y~~P~VVaGF----------------Ep~DiL~~i~~ll~ 240 (369)
T TIGR00075 212 PIAEKYKIPIVIAGF----------------EPVDILQAIYMLLK 240 (369)
T ss_pred HHHHHcCCCeEEecc----------------CHHHHHHHHHHHHH
Confidence 765 6899998865 45566666655553
No 327
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=25.34 E-value=86 Score=27.41 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=23.8
Q ss_pred cccEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 4 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 4 ~~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
+.++|+|+ || +.-...+++.|.+.| ++|+|+++
T Consensus 12 ~~~~vlVv--------GG-G~va~rka~~Ll~~g-a~V~VIsp 44 (157)
T PRK06719 12 HNKVVVII--------GG-GKIAYRKASGLKDTG-AFVTVVSP 44 (157)
T ss_pred CCCEEEEE--------CC-CHHHHHHHHHHHhCC-CEEEEEcC
Confidence 34567666 23 444567788899988 99999976
No 328
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=25.28 E-value=1.6e+02 Score=24.33 Aligned_cols=47 Identities=17% Similarity=0.087 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEeCCCC----hHHHHHHHHHcCCeEEE
Q 010098 242 KGYEELLGLLNIYHKELAGLEMDLYGNGED----FDQIQRAAKKLKLVVRV 288 (518)
Q Consensus 242 Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~----~~~l~~~~~~~~l~v~~ 288 (518)
+.-++-.+.+.++.+.-++++++++|.|.. ...+++..+..|+.+..
T Consensus 51 ~~~~Lt~e~f~~vl~~a~~~EilliGTG~~~rf~p~~l~aal~~~gIsve~ 101 (127)
T COG3737 51 TLSDLTPEDFERVLAEAPDVEILLIGTGARLRFPPPKLRAALKAAGISVEP 101 (127)
T ss_pred ChhhCCHHHHHHHHhcCCCceEEEEecCccccCCCHHHHHHHHHcCCcccc
Confidence 444455667777778888999999999876 37788888888877654
No 329
>PRK04531 acetylglutamate kinase; Provisional
Probab=25.23 E-value=3.7e+02 Score=27.63 Aligned_cols=120 Identities=16% Similarity=0.177 Sum_probs=64.3
Q ss_pred ccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEE-eCCCChHHHHHHHHHcCCeEEEeCC--CCChH--HHHhhcC
Q 010098 229 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLY-GNGEDFDQIQRAAKKLKLVVRVYPG--RDHAD--PIFHDYK 303 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~iv-G~g~~~~~l~~~~~~~~l~v~~~~~--~~~~~--~l~~~ad 303 (518)
+..++-+|.-.-....+.+++.+..+... +.++++| |+| .++.++.++.|++.++..+ +.+.+ ++...+-
T Consensus 37 ~~~VIKiGG~~l~~~~~~l~~dla~L~~~--G~~~VlVHGgg---pqI~~~l~~~gie~~~v~G~RVTd~~tl~vv~~~l 111 (398)
T PRK04531 37 RFAVIKVGGAVLRDDLEALASSLSFLQEV--GLTPIVVHGAG---PQLDAELDAAGIEKETVNGLRVTSPEALAIVRKVF 111 (398)
T ss_pred cEEEEEEChHHhhcCHHHHHHHHHHHHHC--CCcEEEEECCC---HHHHHHHHHcCCCcEEECCEecCCHHHHHHHHHHH
Confidence 45566666533224578888888887765 4666555 555 4566777788888766543 22222 2222111
Q ss_pred eeEecCCCCCCchHHHHHHHcCC-eEEeeCCCCccccccCCcEEeeC-CHHHHHHHHHHHHhC
Q 010098 304 VFLNPSTTDVVCTATAEALAMGK-IVVCANHPSNDFFKQFPNCRTYD-GRNGFVEATLKALAE 364 (518)
Q Consensus 304 v~v~pS~~E~~~~~~lEAma~G~-PVV~t~~g~~e~i~~~~~g~~~~-d~~~l~~~i~~ll~~ 364 (518)
.-++....+. +-+++..|. |||++ .+. ...|.+++ |.++++.++...+.-
T Consensus 112 ~~vn~~lv~~----I~~~L~~g~IPVlsp-lg~------~~~G~~~NvnaD~vA~~LA~aL~a 163 (398)
T PRK04531 112 QRSNLDLVEA----VESSLRAGSIPVIAS-LGE------TPSGQILNINADVAANELVSALQP 163 (398)
T ss_pred HHHHHHHHHH----HHHHHHCCCEEEEeC-cEE------CCCCcEEEECHHHHHHHHHHHcCC
Confidence 1111111000 556778885 66643 221 12333444 777777777777653
No 330
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=25.15 E-value=5.6e+02 Score=23.82 Aligned_cols=62 Identities=13% Similarity=-0.016 Sum_probs=31.8
Q ss_pred hcCeeE-ecCCCCCCchHHHHHHHcCCeEEeeCCCCccccccCCcEEe-eCCHHHHHHHHHHHHhC
Q 010098 301 DYKVFL-NPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRT-YDGRNGFVEATLKALAE 364 (518)
Q Consensus 301 ~adv~v-~pS~~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~-~~d~~~l~~~i~~ll~~ 364 (518)
..|.+| .|...+...-.+-++...|+|+|..+....+. . ....++ .++.+.-..+...+++.
T Consensus 56 ~vdgiii~~~~~~~~~~~~~~l~~~~iPvv~~~~~~~~~-~-~~~~~V~~d~~~~g~~~~~~l~~~ 119 (272)
T cd06301 56 GVDAIIVVPVDTAATAPIVKAANAAGIPLVYVNRRPENA-P-KGVAYVGSDEVVAGRLQAEYVADK 119 (272)
T ss_pred CCCEEEEecCchhhhHHHHHHHHHCCCeEEEecCCCCCC-C-CeeEEEecChHHHHHHHHHHHHHH
Confidence 456444 44333223334566678899999886643211 1 122333 35555555555555544
No 331
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=25.07 E-value=3.8e+02 Score=26.61 Aligned_cols=54 Identities=13% Similarity=0.270 Sum_probs=36.9
Q ss_pred hHHHHhhcCeeE--ecCCCCC---CchHHHHHHHcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHH
Q 010098 295 ADPIFHDYKVFL--NPSTTDV---VCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLK 360 (518)
Q Consensus 295 ~~~l~~~adv~v--~pS~~E~---~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ 360 (518)
.+++++.+|+.+ .|...|+ +.-..++.|--|.-+|-+..|+ ++ |.+++.+++++
T Consensus 194 l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~--~V----------De~ALi~AL~~ 252 (324)
T COG1052 194 LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGG--LV----------DEQALIDALKS 252 (324)
T ss_pred HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCcc--cc----------CHHHHHHHHHh
Confidence 889999999655 4655565 5666788887777777775543 11 55666666665
No 332
>PLN02764 glycosyltransferase family protein
Probab=25.00 E-value=1e+02 Score=32.25 Aligned_cols=41 Identities=32% Similarity=0.618 Sum_probs=29.4
Q ss_pred CCccccEEEEEeeccCCcccccccc-hHHHHHHHHhcCCeeEEEEecc
Q 010098 1 MDRKQQHIAIFTTASLPWLTGTAVN-PLFRAAYLAKDGERRVTLVIPW 47 (518)
Q Consensus 1 M~~~~~rI~ivt~~~~P~~~G~~~~-~~~~a~~L~~~gg~~V~vi~~~ 47 (518)
|...+.||+++ |+..-+-+. ++.+++.|+.+| ..||++++.
T Consensus 1 ~~~~~~Hvvl~-----P~paqGHi~P~l~LAk~La~~g-~~vT~~tt~ 42 (453)
T PLN02764 1 MGGLKFHVLMY-----PWFATGHMTPFLFLANKLAEKG-HTVTFLLPK 42 (453)
T ss_pred CCCCCcEEEEE-----CCcccccHHHHHHHHHHHHhCC-CEEEEEeCc
Confidence 56666898888 343333443 467889999888 999999883
No 333
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=24.77 E-value=76 Score=33.37 Aligned_cols=39 Identities=10% Similarity=0.143 Sum_probs=29.1
Q ss_pred EEEEEeeccCCcccc-cccchHHHHHHHHhcCCeeEEEEec
Q 010098 7 HIAIFTTASLPWLTG-TAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 7 rI~ivt~~~~P~~~G-~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
+|++++...+|+..| ++.....+.+.|-+.- ..|..+++
T Consensus 1 ~v~l~~egtyp~~~ggvs~w~~~~i~~~p~~~-f~~~~~~~ 40 (475)
T cd03813 1 DVCLVLEGTYPYVRGGVSSWVHQLITGLPEHT-FAVVFIGA 40 (475)
T ss_pred CeEEEEecCCCCcCCchhHHHHHHHhhCCCce-EEEEEEec
Confidence 589999888898755 4555566778887776 77877777
No 334
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=24.67 E-value=3.7e+02 Score=26.99 Aligned_cols=72 Identities=14% Similarity=0.155 Sum_probs=43.6
Q ss_pred ChHHHHhhcCeeEec--CCCCCCc-hHHHHHHHcCCeEEeeC--CCC-ccccccCCcEEe----eCCHHHHHHHHHHHHh
Q 010098 294 HADPIFHDYKVFLNP--STTDVVC-TATAEALAMGKIVVCAN--HPS-NDFFKQFPNCRT----YDGRNGFVEATLKALA 363 (518)
Q Consensus 294 ~~~~l~~~adv~v~p--S~~E~~~-~~~lEAma~G~PVV~t~--~g~-~e~i~~~~~g~~----~~d~~~l~~~i~~ll~ 363 (518)
...++++.+..++.. |..+.+= =++.+|+..|+-.|.-. .+. .+++.. +.++ ++++++|++-|..+.+
T Consensus 220 ~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~~~~~P~--~SfI~~~df~s~~~La~yl~~l~~ 297 (349)
T PF00852_consen 220 CKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNYEEFAPP--NSFIHVDDFKSPKELADYLKYLDK 297 (349)
T ss_dssp -HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTHHHHS-G--GGSEEGGGSSSHHHHHHHHHHHHT
T ss_pred cccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEecccccCCCC--CCccchhcCCCHHHHHHHHHHHhc
Confidence 355778888766544 3444433 36889999996544443 223 556544 3444 3589999999999988
Q ss_pred CCCC
Q 010098 364 EEPA 367 (518)
Q Consensus 364 ~~~~ 367 (518)
|++.
T Consensus 298 n~~~ 301 (349)
T PF00852_consen 298 NDEL 301 (349)
T ss_dssp -HHH
T ss_pred CHHH
Confidence 7653
No 335
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=24.26 E-value=2.6e+02 Score=19.64 Aligned_cols=59 Identities=14% Similarity=0.092 Sum_probs=36.8
Q ss_pred EEEEeC-CCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeC
Q 010098 263 MDLYGN-GEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCAN 332 (518)
Q Consensus 263 l~ivG~-g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~ 332 (518)
+.+-|- +.+++.+.+++..+|.. +..... .....+|. .+..+-+.-.|...|+|||..+
T Consensus 3 i~~sg~~~~~~~~l~~~i~~~Gg~--~~~~lt------~~~THLI~---~~~~~~K~~~A~~~gi~vV~~~ 62 (63)
T PF12738_consen 3 ICFSGFSGKERSQLRKLIEALGGK--YSKDLT------KKTTHLIC---SSPEGKKYRKAKEWGIPVVSPD 62 (63)
T ss_dssp EEEEEB-TTTCCHHHHHHHCTT-E--EESSSS------TT-SEEEE---ES--HHHHHHHHHCTSEEEEHH
T ss_pred EEECCCCHHHHHHHHHHHHHCCCE--Eecccc------CCceEEEE---eCCCcHHHHHHHHCCCcEECCC
Confidence 344454 34578899999888853 322221 15555565 4456888999999999999753
No 336
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=24.02 E-value=3.4e+02 Score=27.70 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=51.6
Q ss_pred CcEEEEEeCCCChHHHHHHHHHcCCeEEEeCC----------CCChHHHHhhcCeeEe--cCCCC----C---CchHHHH
Q 010098 260 GLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPG----------RDHADPIFHDYKVFLN--PSTTD----V---VCTATAE 320 (518)
Q Consensus 260 ~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~----------~~~~~~l~~~adv~v~--pS~~E----~---~~~~~lE 320 (518)
+-++-|+|-|.--..+.+.++.+|.++..+.+ ..+.+++++.||+.++ |...| + ++-..++
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~ 195 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLA 195 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHh
Confidence 46788888887666777777778877665432 2356688999996553 43332 3 5556888
Q ss_pred HHHcCCeEEeeCCCC
Q 010098 321 ALAMGKIVVCANHPS 335 (518)
Q Consensus 321 Ama~G~PVV~t~~g~ 335 (518)
.|--|.-+|-+..|+
T Consensus 196 ~mk~gailIN~aRG~ 210 (381)
T PRK00257 196 SLRPGAWLINASRGA 210 (381)
T ss_pred cCCCCeEEEECCCCc
Confidence 888888788776664
No 337
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=23.96 E-value=2e+02 Score=26.48 Aligned_cols=100 Identities=15% Similarity=0.131 Sum_probs=56.3
Q ss_pred ccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC--hHHHHHHHHHcCCe--EEEeCCCCChHHHHhhcCe
Q 010098 229 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLV--VRVYPGRDHADPIFHDYKV 304 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~~~l~--v~~~~~~~~~~~l~~~adv 304 (518)
..+++++|.= ..|=|-++ ++..|....-++.+...|+... .+..+...+.++.. +.+.... +....+|+
T Consensus 50 ~~v~vlcG~G--nNGGDG~V-aAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l~~~~~v~~~~~~----~~~~~~dv 122 (203)
T COG0062 50 RRVLVLCGPG--NNGGDGLV-AARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSLGIGGVVKIKELE----DEPESADV 122 (203)
T ss_pred CEEEEEECCC--CccHHHHH-HHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHhhcCCcceeecccc----cccccCCE
Confidence 4567777742 34445444 4455555555788888886443 23333333334432 2222211 15678887
Q ss_pred eEecC--------CCCCCchHHHHHHHcCCeEEeeCCCC
Q 010098 305 FLNPS--------TTDVVCTATAEALAMGKIVVCANHPS 335 (518)
Q Consensus 305 ~v~pS--------~~E~~~~~~lEAma~G~PVV~t~~g~ 335 (518)
.|=.- ..|.+...+-..=+.|+|||+-|.|+
T Consensus 123 IVDalfG~G~~g~lrep~a~~Ie~iN~~~~pivAVDiPS 161 (203)
T COG0062 123 IVDALFGTGLSGPLREPFASLIEAINASGKPIVAVDIPS 161 (203)
T ss_pred EEEeceecCCCCCCccHHHHHHHHHHhcCCceEEEeCCC
Confidence 76432 34555544444455999999999985
No 338
>PRK04155 chaperone protein HchA; Provisional
Probab=23.95 E-value=1.4e+02 Score=29.07 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=27.6
Q ss_pred cEEEEEeeccCCcc--cc----cccchHHHH---HHHHhcCCeeEEEEec
Q 010098 6 QHIAIFTTASLPWL--TG----TAVNPLFRA---AYLAKDGERRVTLVIP 46 (518)
Q Consensus 6 ~rI~ivt~~~~P~~--~G----~~~~~~~~a---~~L~~~gg~~V~vi~~ 46 (518)
+||+||.++.--.. +| ++....++. ..|.+.| ++|+++++
T Consensus 50 kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG-~eVdiAS~ 98 (287)
T PRK04155 50 KKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAG-FEFDVATL 98 (287)
T ss_pred CeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCC-CEEEEEec
Confidence 69999998663321 22 345555554 6777777 99999988
No 339
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=23.77 E-value=5.9e+02 Score=23.76 Aligned_cols=64 Identities=14% Similarity=-0.109 Sum_probs=30.8
Q ss_pred hcCeeEe-cCCCCCCchHHHHHHHcCCeEEeeCCCCccccccCCcEEe-eCCHHHHHHHHHHHHhC
Q 010098 301 DYKVFLN-PSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRT-YDGRNGFVEATLKALAE 364 (518)
Q Consensus 301 ~adv~v~-pS~~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~-~~d~~~l~~~i~~ll~~ 364 (518)
..|.+|. |...+.+--.+-++...|+|||..+......-.......+ .++.+.-..+...+++.
T Consensus 55 ~vdgiIi~~~~~~~~~~~i~~~~~~~iPvV~~~~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~ 120 (273)
T cd06309 55 GVDVIILAPVVETGWDPVLKEAKAAGIPVILVDRGVDVKDDSLYVTFIGSDFVEEGRRAADWLAKA 120 (273)
T ss_pred CCCEEEEcCCccccchHHHHHHHHCCCCEEEEecCcCCccCcceeeEecCChHHHHHHHHHHHHHH
Confidence 4564443 4332222223456778899999997642110000011223 34555555555555553
No 340
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=23.73 E-value=1.1e+02 Score=26.09 Aligned_cols=38 Identities=13% Similarity=0.083 Sum_probs=24.0
Q ss_pred cEEEEEeeccCCcccccccchHHHH-HHHHhcCCeeEEEEec
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRA-AYLAKDGERRVTLVIP 46 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a-~~L~~~gg~~V~vi~~ 46 (518)
|||++|+.+. ...|........+ +.+.+.| ++|.++-.
T Consensus 1 Mkilii~gS~--r~~~~t~~l~~~~~~~l~~~g-~e~~~i~l 39 (152)
T PF03358_consen 1 MKILIINGSP--RKNSNTRKLAEAVAEQLEEAG-AEVEVIDL 39 (152)
T ss_dssp -EEEEEESSS--STTSHHHHHHHHHHHHHHHTT-EEEEEEEC
T ss_pred CEEEEEECcC--CCCCHHHHHHHHHHHHHHHcC-CEEEEEec
Confidence 7999997764 4456444444333 5565666 99999955
No 341
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=23.67 E-value=2.1e+02 Score=24.01 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=32.9
Q ss_pred ccCCHH--HHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCC-CCChHHHHhhcCeeE
Q 010098 240 WSKGYE--ELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPG-RDHADPIFHDYKVFL 306 (518)
Q Consensus 240 ~~Kg~~--~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~-~~~~~~l~~~adv~v 306 (518)
..|+.+ +.++++....+..++.-+++.|+++ ...+-+.+++.|..+.+.+. .....++.+.||-|+
T Consensus 75 ~k~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~D-f~~~v~~l~~~g~~V~v~~~~~~~s~~L~~~ad~f~ 143 (146)
T PF01936_consen 75 GKKGVDVALAVDILELAYENPPDTIVLVSGDSD-FAPLVRKLRERGKRVIVVGAEDSASEALRSAADEFI 143 (146)
T ss_dssp -S---HHHHHHHHHHHG--GG-SEEEEE---GG-GHHHHHHHHHH--EEEEEE-GGGS-HHHHHHSSEEE
T ss_pred ccCCcHHHHHHHHHHHhhccCCCEEEEEECcHH-HHHHHHHHHHcCCEEEEEEeCCCCCHHHHHhcCEEE
Confidence 445555 4457776665555556566666644 44444445678888887773 344448888888776
No 342
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=23.60 E-value=5.5e+02 Score=23.17 Aligned_cols=113 Identities=12% Similarity=0.059 Sum_probs=60.9
Q ss_pred ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEE---EeCC------CCChH---HHHhhcCeeEe
Q 010098 240 WSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVR---VYPG------RDHAD---PIFHDYKVFLN 307 (518)
Q Consensus 240 ~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~---~~~~------~~~~~---~l~~~adv~v~ 307 (518)
...|...+++.+ +++ ++++.|+-++. ...+....+.+++... +++. ..+.. .+++... +.
T Consensus 83 ~~~g~~~~l~~L---~~~--g~~~~i~S~~~-~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~--~~ 154 (214)
T PRK13288 83 EYETVYETLKTL---KKQ--GYKLGIVTTKM-RDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLG--AK 154 (214)
T ss_pred cCcCHHHHHHHH---HHC--CCeEEEEeCCC-HHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcC--CC
Confidence 445666666655 333 57777776543 4556666677776522 2221 11122 2222222 22
Q ss_pred cCC---CCCCchHHHHHHHcCCeEEeeCCCC--ccccccCCcEEeeCCHHHHHHHHHH
Q 010098 308 PST---TDVVCTATAEALAMGKIVVCANHPS--NDFFKQFPNCRTYDGRNGFVEATLK 360 (518)
Q Consensus 308 pS~---~E~~~~~~lEAma~G~PVV~t~~g~--~e~i~~~~~g~~~~d~~~l~~~i~~ 360 (518)
|+. .+-...=+.-|.++|.++|.-..+. .+.+.....-+++++.+++.+.+.+
T Consensus 155 ~~~~~~iGDs~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~~~~~~i~~~~~l~~~i~~ 212 (214)
T PRK13288 155 PEEALMVGDNHHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFMLDKMSDLLAIVGD 212 (214)
T ss_pred HHHEEEECCCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhcCcCEEECCHHHHHHHHhh
Confidence 321 2222455777889999999876652 3323222344667888888776644
No 343
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.51 E-value=5.2e+02 Score=24.31 Aligned_cols=62 Identities=11% Similarity=-0.029 Sum_probs=30.2
Q ss_pred hcCeeEe-cCCCCCCchHHHHHHHcCCeEEeeCCCCccccccCCcEEe-eCCHHHHHHHHHHHHh
Q 010098 301 DYKVFLN-PSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRT-YDGRNGFVEATLKALA 363 (518)
Q Consensus 301 ~adv~v~-pS~~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~-~~d~~~l~~~i~~ll~ 363 (518)
..|.+++ |...+...-.+-++...|.|||..+....+. ......++ .++.+.-..+.+.+++
T Consensus 55 ~vdgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~~~~~~-~~~~~~~v~~d~~~~g~~~~~~l~~ 118 (272)
T cd06313 55 GWDFIAVDPLGIGTLTEAVQKAIARGIPVIDMGTLIAPL-QINVHSFLAPDNYFMGASVAQALCN 118 (272)
T ss_pred CCCEEEEcCCChHHhHHHHHHHHHCCCcEEEeCCCCCCC-CCceEEEECCCcHHHHHHHHHHHHH
Confidence 3564444 3322222233556677899999997643110 00112233 3555555555555554
No 344
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=23.34 E-value=2.3e+02 Score=27.18 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=31.9
Q ss_pred CChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCC
Q 010098 293 DHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP 334 (518)
Q Consensus 293 ~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g 334 (518)
++.+++...+|+.|--|..+...-.+.+|+..|+|||+...|
T Consensus 60 ~d~~~l~~~~DvVIdfT~p~~~~~~~~~al~~g~~vVigttg 101 (266)
T TIGR00036 60 DDLEAVETDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTG 101 (266)
T ss_pred CCHHHhcCCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCC
Confidence 455555446898888777677677789999999999986554
No 345
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=23.33 E-value=5.2e+02 Score=24.55 Aligned_cols=25 Identities=28% Similarity=0.159 Sum_probs=19.7
Q ss_pred chHHHHHHHcCCeEEee-CCCC-cccc
Q 010098 315 CTATAEALAMGKIVVCA-NHPS-NDFF 339 (518)
Q Consensus 315 ~~~~lEAma~G~PVV~t-~~g~-~e~i 339 (518)
-.++.||--+|+|||+- |..+ ++.+
T Consensus 169 ~iAv~EA~klgIPVvAlvDTn~dpd~V 195 (252)
T COG0052 169 KIAVKEANKLGIPVVALVDTNCDPDGV 195 (252)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCccC
Confidence 46899999999999998 5544 5554
No 346
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=23.33 E-value=2e+02 Score=25.53 Aligned_cols=69 Identities=20% Similarity=0.210 Sum_probs=43.4
Q ss_pred HHHhhcCeeEecC------CCCCCchHHHHHHHcCCeEEeeCC-----CC-ccccccCCcEE-ee-CCHHHHHHHHHHHH
Q 010098 297 PIFHDYKVFLNPS------TTDVVCTATAEALAMGKIVVCANH-----PS-NDFFKQFPNCR-TY-DGRNGFVEATLKAL 362 (518)
Q Consensus 297 ~l~~~adv~v~pS------~~E~~~~~~lEAma~G~PVV~t~~-----g~-~e~i~~~~~g~-~~-~d~~~l~~~i~~ll 362 (518)
..+..||+.+.-- .+-.|.-.+-|.|-|++|+|++=+ |. .++-..+.-.+ +. .|-+.+.+.|...|
T Consensus 96 rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~v~v~lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 96 RALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIKKLGGVYVFLTPENRNRILNEILSVL 175 (179)
T ss_pred HHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHhhhcCCEEEEEccchhhHHHHHHHHHh
Confidence 4556678877542 123466678889999999999944 22 23333333333 22 37778888888887
Q ss_pred hCC
Q 010098 363 AEE 365 (518)
Q Consensus 363 ~~~ 365 (518)
...
T Consensus 176 ~~~ 178 (179)
T COG1618 176 KGE 178 (179)
T ss_pred ccC
Confidence 654
No 347
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=23.28 E-value=1.2e+02 Score=25.56 Aligned_cols=88 Identities=11% Similarity=0.229 Sum_probs=48.0
Q ss_pred EEEEEeCCCChHHHHHHHHHcCCe-EEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCe-E-EeeCCCC---
Q 010098 262 EMDLYGNGEDFDQIQRAAKKLKLV-VRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKI-V-VCANHPS--- 335 (518)
Q Consensus 262 ~l~ivG~g~~~~~l~~~~~~~~l~-v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~P-V-V~t~~g~--- 335 (518)
++.+++. ..+..+++++.++-. +.+ ...++..+.+..+|+.|+.+..... ...-|.+..+.+ . +..|.+-
T Consensus 38 ~i~i~nR--t~~ra~~l~~~~~~~~~~~-~~~~~~~~~~~~~DivI~aT~~~~~-~i~~~~~~~~~~~~~~v~Dla~Pr~ 113 (135)
T PF01488_consen 38 EITIVNR--TPERAEALAEEFGGVNIEA-IPLEDLEEALQEADIVINATPSGMP-IITEEMLKKASKKLRLVIDLAVPRD 113 (135)
T ss_dssp EEEEEES--SHHHHHHHHHHHTGCSEEE-EEGGGHCHHHHTESEEEE-SSTTST-SSTHHHHTTTCHHCSEEEES-SS-S
T ss_pred EEEEEEC--CHHHHHHHHHHcCccccce-eeHHHHHHHHhhCCeEEEecCCCCc-ccCHHHHHHHHhhhhceeccccCCC
Confidence 5788775 566777777776322 222 3446677899999999988754333 333444555543 2 5555532
Q ss_pred -ccccccCCcEEeeCCHHHH
Q 010098 336 -NDFFKQFPNCRTYDGRNGF 354 (518)
Q Consensus 336 -~e~i~~~~~g~~~~d~~~l 354 (518)
..-+.+-.+..++ |.+++
T Consensus 114 i~~~v~~~~~v~~~-~~d~l 132 (135)
T PF01488_consen 114 IDPEVAELPGVRLY-DLDDL 132 (135)
T ss_dssp B-TTCGGSTTECCE-EHHHH
T ss_pred CChhhcccCCeEEE-Ehhhc
Confidence 3333343444444 34444
No 348
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=23.06 E-value=32 Score=32.09 Aligned_cols=96 Identities=16% Similarity=0.273 Sum_probs=49.0
Q ss_pred EEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC--hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcC--ee
Q 010098 232 AYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYK--VF 305 (518)
Q Consensus 232 il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~ad--v~ 305 (518)
|+=+|++ |...+++.+--=+...+|+...++|+|.. .+++++... ..+. .-| ++
T Consensus 6 iiKlGNi----g~s~~idl~LDErAdRedI~vrv~gsGaKm~pe~~e~~~~----------------~~~~~~~pdf~I~ 65 (276)
T PF01993_consen 6 IIKLGNI----GTSVVIDLLLDERADREDIDVRVVGSGAKMGPEDVEEVVT----------------KMLKEWDPDFVIV 65 (276)
T ss_dssp EEEES------HHHHHTTGGGSTTS--SSEEEEEEEEET--SHHHHHHHHH----------------HHHHHH--SEEEE
T ss_pred EEEeccc----chHHHHHHHHHhhhccCCceEEEeccCCCCCHHHHHHHHH----------------HHHHhhCCCEEEE
Confidence 3344554 33444444422223456889999998875 344443321 1111 224 44
Q ss_pred EecCCCCCCchHHHHHH-HcCCeEE-eeCCCC---ccccccCCcEEe
Q 010098 306 LNPSTTDVVCTATAEAL-AMGKIVV-CANHPS---NDFFKQFPNCRT 347 (518)
Q Consensus 306 v~pS~~E~~~~~~lEAm-a~G~PVV-~t~~g~---~e~i~~~~~g~~ 347 (518)
+.|.-.-+-|...-|.+ +.|+|+| .+|.++ .+-++...-|++
T Consensus 66 isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k~kd~l~~~g~GYI 112 (276)
T PF01993_consen 66 ISPNAAAPGPTKAREMLSAKGIPCIVISDAPTKKAKDALEEEGFGYI 112 (276)
T ss_dssp E-S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGGGGHHHHHHTT-EEE
T ss_pred ECCCCCCCCcHHHHHHHHhCCCCEEEEcCCCchhhHHHHHhcCCcEE
Confidence 45544555677788887 5899955 457665 566777777776
No 349
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=22.89 E-value=1.2e+02 Score=28.34 Aligned_cols=71 Identities=15% Similarity=0.254 Sum_probs=40.9
Q ss_pred EeecccCC-HHHHHHHHHHHHHhcCCcEEEEEeCCC--ChHH---HHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecC
Q 010098 236 GRMVWSKG-YEELLGLLNIYHKELAGLEMDLYGNGE--DFDQ---IQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPS 309 (518)
Q Consensus 236 Gr~~~~Kg-~~~ll~a~~~l~~~~~~~~l~ivG~g~--~~~~---l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS 309 (518)
-.++|.|- .+...+.++++.+. ....+++|+.. ..+. +-+.+++..+.+..+. .+...+-..+|.+++||
T Consensus 4 ~liDPdK~~~~~~~~~~~~~~~~--gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp--~~~~~i~~~aDa~l~~s 79 (223)
T TIGR01768 4 TLIDPDKTNPSEADEIAKAAAES--GTDAILIGGSQGVTYEKTDTLIEALRRYGLPIILFP--SNPTNVSRDADALFFPS 79 (223)
T ss_pred eeECCCCCCccccHHHHHHHHhc--CCCEEEEcCCCcccHHHHHHHHHHHhccCCCEEEeC--CCccccCcCCCEEEEEE
Confidence 34566662 33334455555554 34566777633 2333 3455566666666544 34555667899999998
Q ss_pred C
Q 010098 310 T 310 (518)
Q Consensus 310 ~ 310 (518)
.
T Consensus 80 v 80 (223)
T TIGR01768 80 V 80 (223)
T ss_pred e
Confidence 4
No 350
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=22.50 E-value=1.1e+02 Score=31.91 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=28.0
Q ss_pred CCcc--ccEEEEEeeccCCcccccccc-hHHHHHHHHhcCCeeEEEEecc
Q 010098 1 MDRK--QQHIAIFTTASLPWLTGTAVN-PLFRAAYLAKDGERRVTLVIPW 47 (518)
Q Consensus 1 M~~~--~~rI~ivt~~~~P~~~G~~~~-~~~~a~~L~~~gg~~V~vi~~~ 47 (518)
|.++ +.||++| |+..-+-+. ++.+++.|+.+| ..||++++.
T Consensus 1 ~~~~~~~~HVvlv-----PfpaqGHi~P~l~LAk~La~~G-~~VT~v~T~ 44 (451)
T PLN02410 1 MEEKPARRRVVLV-----PVPAQGHISPMMQLAKTLHLKG-FSITIAQTK 44 (451)
T ss_pred CCcCCCCCEEEEE-----CCCccccHHHHHHHHHHHHcCC-CEEEEEeCc
Confidence 6654 3578777 333222444 467889999887 999999883
No 351
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=22.38 E-value=1.4e+02 Score=28.02 Aligned_cols=39 Identities=21% Similarity=0.014 Sum_probs=25.0
Q ss_pred EEEEEeeccCCc--ccc--cccchHHHH---HHHHhcCCeeEEEEec
Q 010098 7 HIAIFTTASLPW--LTG--TAVNPLFRA---AYLAKDGERRVTLVIP 46 (518)
Q Consensus 7 rI~ivt~~~~P~--~~G--~~~~~~~~a---~~L~~~gg~~V~vi~~ 46 (518)
||+||.++..-+ .+| ++....+++ ..|.+.| ++|+++++
T Consensus 1 ~vL~v~s~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG-~~VdiaS~ 46 (231)
T cd03147 1 KALIALTSYYGPFYPDGKNTGVFFSEALHPFNVFREAG-FEVDFVSE 46 (231)
T ss_pred CEEEEEcCCcccCCCCCCccccCHHHHHHHHHHHHHCC-CEEEEECC
Confidence 588888765211 122 334444444 6777777 99999988
No 352
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=22.26 E-value=1e+02 Score=25.15 Aligned_cols=42 Identities=26% Similarity=0.360 Sum_probs=32.0
Q ss_pred CChHHHHh--hcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCC
Q 010098 293 DHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP 334 (518)
Q Consensus 293 ~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g 334 (518)
.+.++++. ..|++|=.+..|...--+.+++..|+.||+.+.+
T Consensus 49 ~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~L~~G~~VVt~nk~ 92 (117)
T PF03447_consen 49 TDLEELIDDPDIDVVVECTSSEAVAEYYEKALERGKHVVTANKG 92 (117)
T ss_dssp SSHHHHHTHTT-SEEEE-SSCHHHHHHHHHHHHTTCEEEES-HH
T ss_pred CCHHHHhcCcCCCEEEECCCchHHHHHHHHHHHCCCeEEEECHH
Confidence 56777777 8899998776777667788999999999999764
No 353
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=22.20 E-value=2.2e+02 Score=27.83 Aligned_cols=22 Identities=27% Similarity=0.185 Sum_probs=18.1
Q ss_pred ccchHHHHHHHHhcCCeeEEEEe
Q 010098 23 AVNPLFRAAYLAKDGERRVTLVI 45 (518)
Q Consensus 23 ~~~~~~~a~~L~~~gg~~V~vi~ 45 (518)
=.+-...++.|.+.| ++|.+..
T Consensus 11 d~r~~~~~~~l~~~G-~~v~~~g 32 (296)
T PRK08306 11 DARQLELIRKLVELG-AKVSLVG 32 (296)
T ss_pred cHHHHHHHHHHHHCC-CEEEEEe
Confidence 556677889999998 9999953
No 354
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=21.93 E-value=5.8e+02 Score=22.83 Aligned_cols=115 Identities=17% Similarity=0.081 Sum_probs=62.1
Q ss_pred ecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeE---EEeCC-----CCChHHHHhhc--CeeEe
Q 010098 238 MVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVV---RVYPG-----RDHADPIFHDY--KVFLN 307 (518)
Q Consensus 238 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v---~~~~~-----~~~~~~l~~~a--dv~v~ 307 (518)
+....|...+++.+ ++. ++++.++.++. ...++...+.+++.. .+++. ....++.+..+ ..-+.
T Consensus 74 ~~~~~g~~~~L~~L---~~~--g~~~~i~Sn~~-~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~ 147 (205)
T TIGR01454 74 VEVFPGVPELLAEL---RAD--GVGTAIATGKS-GPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVP 147 (205)
T ss_pred cccCCCHHHHHHHH---HHC--CCeEEEEeCCc-hHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCC
Confidence 34456666666655 333 57777777643 444566667777641 12221 11122333321 12233
Q ss_pred cCC---CCCCchHHHHHHHcCCeEEeeCCC-C-ccccccCCcEEeeCCHHHHHHHH
Q 010098 308 PST---TDVVCTATAEALAMGKIVVCANHP-S-NDFFKQFPNCRTYDGRNGFVEAT 358 (518)
Q Consensus 308 pS~---~E~~~~~~lEAma~G~PVV~t~~g-~-~e~i~~~~~g~~~~d~~~l~~~i 358 (518)
|+. .+--..=+.-|-++|+++|....| + .+.+......++++++.++...+
T Consensus 148 ~~~~l~igD~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~~~~~~l~~~~ 203 (205)
T TIGR01454 148 PEDAVMVGDAVTDLASARAAGTATVAALWGEGDAGELLAARPDFLLRKPQSLLALC 203 (205)
T ss_pred hhheEEEcCCHHHHHHHHHcCCeEEEEEecCCChhhhhhcCCCeeeCCHHHHHHHh
Confidence 321 122234577889999999877665 3 44444445566678888876544
No 355
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=21.78 E-value=4.5e+02 Score=23.71 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCC-----------CCchHHHHHHHcCCeEEeeCCCC
Q 010098 271 DFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTD-----------VVCTATAEALAMGKIVVCANHPS 335 (518)
Q Consensus 271 ~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E-----------~~~~~~lEAma~G~PVV~t~~g~ 335 (518)
+...+....+++|.++.+... .+ -+..+|.+|+|.-.+ +..-.+.++...|+||+..-.|.
T Consensus 11 n~~~~~~~l~~~g~~v~~~~~---~~-~l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~ 82 (199)
T PRK13181 11 NLRSVANALKRLGVEAVVSSD---PE-EIAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGM 82 (199)
T ss_pred hHHHHHHHHHHCCCcEEEEcC---hH-HhccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhH
Confidence 345556666777777666522 22 246788888876322 33455778888999999986653
No 356
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=21.71 E-value=3e+02 Score=25.82 Aligned_cols=67 Identities=12% Similarity=0.138 Sum_probs=44.6
Q ss_pred cEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHH-hhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 261 LEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIF-HDYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 261 ~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~-~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
++++-+-+ .+.+..+.++++++.. .+.+.++++ ...|+.+..+......--..+++.+|+.|++-..
T Consensus 2 ~eLvaV~D-~~~e~a~~~a~~~g~~-----~~~d~~eLl~~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~ 69 (229)
T TIGR03855 2 FEIAAVYD-RNPKDAKELAERCGAK-----IVSDFDEFLPEDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSV 69 (229)
T ss_pred eEEEEEEC-CCHHHHHHHHHHhCCc-----eECCHHHHhcCCCCEEEECCChHHHHHHHHHHHHCCCCEEEECC
Confidence 34544443 4567778888877742 345677776 4678777666555555567889999999999433
No 357
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=21.61 E-value=6.8e+02 Score=23.50 Aligned_cols=89 Identities=10% Similarity=0.007 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCC---C----hHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCC-------
Q 010098 245 EELLGLLNIYHKELAGLEMDLYGNGE---D----FDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPST------- 310 (518)
Q Consensus 245 ~~ll~a~~~l~~~~~~~~l~ivG~g~---~----~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~------- 310 (518)
+...+.+..+.. ..-++.++-... + .+..++..+++|..+..+...++..+.+..+|+.+.+--
T Consensus 18 ~~~~~~~~~~~~--~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~~ad~I~v~GGnt~~l~~ 95 (233)
T PRK05282 18 EHALPLIAELLA--GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIENAEAIFVGGGNTFQLLK 95 (233)
T ss_pred HHHHHHHHHHHc--CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHhcCCEEEECCccHHHHHH
Confidence 344444444333 234566654422 2 244566677788876655544556688899997776621
Q ss_pred ---CCCCchHHHHHHHcCCeEEeeCCCC
Q 010098 311 ---TDVVCTATAEALAMGKIVVCANHPS 335 (518)
Q Consensus 311 ---~E~~~~~~lEAma~G~PVV~t~~g~ 335 (518)
.-++--.+-|+...|+|++.+..|.
T Consensus 96 ~l~~~gl~~~l~~~~~~G~~~~G~SAGA 123 (233)
T PRK05282 96 QLYERGLLAPIREAVKNGTPYIGWSAGA 123 (233)
T ss_pred HHHHCCcHHHHHHHHHCCCEEEEECHHH
Confidence 1123344678999999999998874
No 358
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=21.57 E-value=7.8e+02 Score=24.83 Aligned_cols=103 Identities=16% Similarity=0.196 Sum_probs=60.2
Q ss_pred ccEEEEEE-----eecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC---hHHHHHHHHHcCCeEEEeCC---CCC---
Q 010098 229 TKGAYYIG-----RMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED---FDQIQRAAKKLKLVVRVYPG---RDH--- 294 (518)
Q Consensus 229 ~~~il~vG-----r~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~---~~~l~~~~~~~~l~v~~~~~---~~~--- 294 (518)
.+.++|+| ...+.+|++.++..++.|.+ +..+.|.-..+..+ ..++..+---+...+.|.-+ +..
T Consensus 246 ~Fg~if~GlGlt~S~gk~rN~e~a~~Lv~~LNe-~ak~tli~mrgH~Nv~GFnqv~~~e~GYpf~vdF~rG~prynPgE~ 324 (429)
T COG1029 246 KFGAIFVGLGLTSSRGKHRNVENAINLVKDLNE-YAKFTLIPMRGHYNVTGFNEVLSWETGYPFAVDFSRGYPRYNPGEF 324 (429)
T ss_pred CcceEEEeeceeecccccccHHHHHHHHHHHhh-hceEEEEEeccccccccccchhhhhhCCceeeecccCCcCCCcccc
Confidence 45566666 34568999999999988854 33455544443222 23333322222222444322 222
Q ss_pred -hHHHHhh--cC-eeEecC-CCCCCchHHHHHHHcCCeEEeeCC
Q 010098 295 -ADPIFHD--YK-VFLNPS-TTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 295 -~~~l~~~--ad-v~v~pS-~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
.-++++. +| ++|..| ..-.||....|.|+ .+|||+-|.
T Consensus 325 s~vdlL~~k~vDAalvi~sDp~ah~P~~~~~~l~-eIPvI~iDp 367 (429)
T COG1029 325 SAVDLLKRKEVDAALVIASDPGAHFPRDAVEHLA-EIPVICIDP 367 (429)
T ss_pred cHHHHHhccCCCeEEEEecCccccChHHHHHHhh-cCCEEEecC
Confidence 2267764 44 455555 46679999999886 699999875
No 359
>PRK06091 membrane protein FdrA; Validated
Probab=21.37 E-value=6.1e+02 Score=27.25 Aligned_cols=55 Identities=15% Similarity=-0.045 Sum_probs=37.8
Q ss_pred CCCchHHHHHH-HcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHhCCC
Q 010098 312 DVVCTATAEAL-AMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEEP 366 (518)
Q Consensus 312 E~~~~~~lEAm-a~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~~ 366 (518)
|+..-.+++++ .+|||||+...|..+.-....+.+.+++.+++++....+..-+.
T Consensus 265 E~v~~~fl~aar~~~KPVVvlk~Grs~~g~~q~GVi~a~tleEl~~~A~~la~~~~ 320 (555)
T PRK06091 265 EAVRLKIINAMKATGKPVVALFLGYTPAVARDENVWFASTLDEAARLACLLSRVTA 320 (555)
T ss_pred hHHHHHHHHHHhhCCCCEEEEEecCCchhhhcCCeEEeCCHHHHHHHHHHHhcccc
Confidence 66666788875 56999999999864333343445556899998887776664443
No 360
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=21.36 E-value=8.5e+02 Score=24.57 Aligned_cols=107 Identities=15% Similarity=0.165 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEeC-------------CCC-hHHHHHHHHHcCCeEEE-eCCCCChHHHHhhcCeeE
Q 010098 242 KGYEELLGLLNIYHKELAGLEMDLYGN-------------GED-FDQIQRAAKKLKLVVRV-YPGRDHADPIFHDYKVFL 306 (518)
Q Consensus 242 Kg~~~ll~a~~~l~~~~~~~~l~ivG~-------------g~~-~~~l~~~~~~~~l~v~~-~~~~~~~~~l~~~adv~v 306 (518)
..-+.+++.+..++.. .+++...|. |.+ ...+.+.+++.|+.+.- .....+++.+...+|++-
T Consensus 129 E~~~~~~~~A~~lk~~--g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~vd~lk 206 (360)
T PRK12595 129 ESYEQVEAVAKALKAK--GLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAVISEIVNPADVEVALDYVDVIQ 206 (360)
T ss_pred cCHHHHHHHHHHHHHc--CCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHhCCeEE
Confidence 3566777777777664 355554442 111 25677778888886443 224445555656689999
Q ss_pred ecCCCCCCchHHHHHH-HcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHhC
Q 010098 307 NPSTTDVVCTATAEAL-AMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAE 364 (518)
Q Consensus 307 ~pS~~E~~~~~~lEAm-a~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~~ 364 (518)
.+|. +..-..+++++ ..|+||+.+..-+ .+.+++..+++.+.+.
T Consensus 207 I~s~-~~~n~~LL~~~a~~gkPVilk~G~~-------------~t~~e~~~Ave~i~~~ 251 (360)
T PRK12595 207 IGAR-NMQNFELLKAAGRVNKPVLLKRGLS-------------ATIEEFIYAAEYIMSQ 251 (360)
T ss_pred ECcc-cccCHHHHHHHHccCCcEEEeCCCC-------------CCHHHHHHHHHHHHHC
Confidence 9985 22234566655 4699999986511 3667777777777653
No 361
>PRK06487 glycerate dehydrogenase; Provisional
Probab=21.23 E-value=2.5e+02 Score=27.70 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=41.1
Q ss_pred cEEEEEeCCCChHHHHHHHHHcCCeEEEeC--------CCCChHHHHhhcCeeEe--cCCCCC---CchHHHHHHHcCCe
Q 010098 261 LEMDLYGNGEDFDQIQRAAKKLKLVVRVYP--------GRDHADPIFHDYKVFLN--PSTTDV---VCTATAEALAMGKI 327 (518)
Q Consensus 261 ~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~--------~~~~~~~l~~~adv~v~--pS~~E~---~~~~~lEAma~G~P 327 (518)
-++-|+|-|.--..+-++++.+|.++..+. ...+.+++++.||++++ |...|+ ++-..++.|--|.-
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~ 228 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGAL 228 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeE
Confidence 344555554444444444444444433221 12356799999996664 444444 66777888877766
Q ss_pred EEeeCC
Q 010098 328 VVCANH 333 (518)
Q Consensus 328 VV~t~~ 333 (518)
+|-+..
T Consensus 229 lIN~aR 234 (317)
T PRK06487 229 LINTAR 234 (317)
T ss_pred EEECCC
Confidence 666654
No 362
>TIGR02536 eut_hyp ethanolamine utilization protein. This family of proteins is found in operons for the polyhedral organelle-based degradation of ethanolamine. This family is not found in proteobacterial species which otherwise have the same suite of genes in the eut operon. Proteobacteria have two genes that are not found in non-proteobacteria which may complement this genes function, a phosphotransacetylase (pfam01515) and the EutJ protein (TIGR02529) of unknown function.
Probab=21.16 E-value=2.3e+02 Score=26.06 Aligned_cols=68 Identities=9% Similarity=-0.085 Sum_probs=41.8
Q ss_pred CCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCC--------CC-----CchHHHHHHHcC
Q 010098 259 AGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTT--------DV-----VCTATAEALAMG 325 (518)
Q Consensus 259 ~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~--------E~-----~~~~~lEAma~G 325 (518)
+.-+-++++++.+..--+++.+++. +.+.. ...+.||+++.|... -| ....+++++..|
T Consensus 19 ~~~k~i~~~~~~~~~i~e~~~~~~~--i~~~~------~~~~~~dillv~~Lt~n~lskIAlGi~d~~~~~~I~~~LL~G 90 (207)
T TIGR02536 19 EEKKYIVALGDSKHAIPEEMLKEFD--VSWVT------SEQKLADILLVSRLSIKELNNISHGQETNEKEKFIIAFLLEG 90 (207)
T ss_pred CcCceEEEecCCchhhHHHHHhhcc--eeecc------hhhhcCCEEEEccCCHHHHHHHHccCCCCHHHHHHHHHHHCC
Confidence 3445555555444444455555443 33222 255689999988532 11 336689999999
Q ss_pred CeEEeeCCC
Q 010098 326 KIVVCANHP 334 (518)
Q Consensus 326 ~PVV~t~~g 334 (518)
+||++...|
T Consensus 91 K~V~v~~eg 99 (207)
T TIGR02536 91 KPIYILKPG 99 (207)
T ss_pred CeEEEEecc
Confidence 999999765
No 363
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=21.00 E-value=3e+02 Score=23.88 Aligned_cols=88 Identities=16% Similarity=0.071 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHhc-CCcEEEEEeCCCC-hHHHHHHHHHcCCeEEEe--CC-CC--ChH-------HHHhh--cCeeEe
Q 010098 244 YEELLGLLNIYHKEL-AGLEMDLYGNGED-FDQIQRAAKKLKLVVRVY--PG-RD--HAD-------PIFHD--YKVFLN 307 (518)
Q Consensus 244 ~~~ll~a~~~l~~~~-~~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~--~~-~~--~~~-------~l~~~--adv~v~ 307 (518)
-..++++..++.+.. ..+..+++|+.+. .+.+++....+|.+-.+. .+ .. +.+ ++++. +|++++
T Consensus 17 ~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~ 96 (164)
T PF01012_consen 17 SLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLF 96 (164)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 457788888887654 2477788885344 456677777678653332 11 11 111 44444 689999
Q ss_pred cCCCCCCchHHHHHHHcCCeEEee
Q 010098 308 PSTTDVVCTATAEALAMGKIVVCA 331 (518)
Q Consensus 308 pS~~E~~~~~~lEAma~G~PVV~t 331 (518)
|+...+-.+.-.=|..+|.|+++-
T Consensus 97 ~~t~~g~~la~~lA~~L~~~~v~~ 120 (164)
T PF01012_consen 97 GSTSFGRDLAPRLAARLGAPLVTD 120 (164)
T ss_dssp ESSHHHHHHHHHHHHHHT-EEEEE
T ss_pred cCcCCCCcHHHHHHHHhCCCccce
Confidence 987666566667777888888765
No 364
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=20.98 E-value=1e+02 Score=31.01 Aligned_cols=142 Identities=12% Similarity=0.061 Sum_probs=77.8
Q ss_pred CCCchHHHHHHHcCCeEEeeCC-----------CC--ccccccCCcEEeeCCHHHHHHHHHHHHhCCCCCCChHHHhcCC
Q 010098 312 DVVCTATAEALAMGKIVVCANH-----------PS--NDFFKQFPNCRTYDGRNGFVEATLKALAEEPAQPTDAQTHQLS 378 (518)
Q Consensus 312 E~~~~~~lEAma~G~PVV~t~~-----------g~--~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~~~~l~~~~~~~~s 378 (518)
++.+-.+.++|+-++|-+.+-. .. .|+.+++..+++++|.+++...++.+.++.....++..++ .
T Consensus 235 ~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~~~~~f~~~d~e~l~~~lr~latdssKs~~kkdkR--~ 312 (427)
T KOG2842|consen 235 EALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQDSEFDFIYPDMEQLLSTLRDLATDSSKSRAKKDRR--V 312 (427)
T ss_pred cchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhcccccccCCCHHHHHHHHHHHHHhhhhhhHHHHHH--H
Confidence 4445567777888888665522 11 5667788888889999999999999998877655544441 1
Q ss_pred HHHHHHHHHHHHHhcCCccccCCCCCCCCC--cccC-cchHHHHHHHHHH-hhhhhccccchhhhhcCCCCCCCCchHHH
Q 010098 379 WESATERFLQVAELVGDVVTKRSKSPSRHL--ESES-LNSKRIIEDAFGY-LHYVASGFETSRRALGAIPGSLQPDEQLC 454 (518)
Q Consensus 379 w~~~~~~~~~~y~~~~~~~~~~~~~~~~~~--~~~~-~~l~~~~d~~l~~-~~~~~~~~~~~r~~~g~~~~~~~~~~~~~ 454 (518)
.......+++..+. ...|....+-.+... .+-. ....+.+...|.- +++.+.-+|.+|-+||-.|.+.+++..-.
T Consensus 313 qr~~fr~vl~~iee-~~~pe~sVRfG~etl~LDSW~~~~~Y~~~~~VLGsGm~~~L~~nEflRdvF~lg~~~~~l~~~~~ 391 (427)
T KOG2842|consen 313 QRSVFRDVLQTIEE-RDIPEESVRIGQETLYLDSWAKKLRYDTFKEVLGSGMSEQLQKNEFLRDVFGLGGPPRALDAAFL 391 (427)
T ss_pred HHHHHHHHHHHHhc-ccCchhheeecceeeehhHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHHHhcCCCCCCcccchh
Confidence 12233333444441 111111100011100 0000 1112223333332 45555568999999999977666665554
Q ss_pred HH
Q 010098 455 KE 456 (518)
Q Consensus 455 ~~ 456 (518)
+.
T Consensus 392 ~~ 393 (427)
T KOG2842|consen 392 KD 393 (427)
T ss_pred cc
Confidence 44
No 365
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=20.89 E-value=4.5e+02 Score=21.14 Aligned_cols=74 Identities=5% Similarity=0.054 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEeCC-CC--hHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHH
Q 010098 243 GYEELLGLLNIYHKELAGLEMDLYGNG-ED--FDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATA 319 (518)
Q Consensus 243 g~~~ll~a~~~l~~~~~~~~l~ivG~g-~~--~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~l 319 (518)
|.+..++++. . ..+.|+|+... .+ .+.++.+++.+++.+..++..++....+....+.+..-..++|.-.++
T Consensus 21 G~~~v~~aik----~-gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~eLg~a~Gk~~~~~iai~d~g~a~~l~ 95 (104)
T PRK05583 21 GYNKCEEAIK----K-KKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEELGNAIGRDEIKILGVKDKNMAKKLL 95 (104)
T ss_pred cHHHHHHHHH----c-CCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHHHHHHhCCCCeEEEEEeChHHHHHHH
Confidence 5666666662 2 25777777652 22 466777777667665444444444444444333333333444444444
Q ss_pred HH
Q 010098 320 EA 321 (518)
Q Consensus 320 EA 321 (518)
+.
T Consensus 96 ~~ 97 (104)
T PRK05583 96 KL 97 (104)
T ss_pred HH
Confidence 43
No 366
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=20.87 E-value=4.7e+02 Score=24.14 Aligned_cols=98 Identities=17% Similarity=0.080 Sum_probs=59.7
Q ss_pred cEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHH-c-CCeEEeeCCCCccc
Q 010098 261 LEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALA-M-GKIVVCANHPSNDF 338 (518)
Q Consensus 261 ~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma-~-G~PVV~t~~g~~e~ 338 (518)
.+ +++|+....+.++..++.++.. +. -...++..+.+||.++.-.+|..+-++-|.-. . |+-||-+.++-...
T Consensus 25 ~e-V~igs~r~~~~~~a~a~~l~~~--i~--~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~tnp~~~~ 99 (211)
T COG2085 25 HE-VIIGSSRGPKALAAAAAALGPL--IT--GGSNEDAAALADVVVLAVPFEAIPDVLAELRDALGGKIVIDATNPIEVN 99 (211)
T ss_pred Ce-EEEecCCChhHHHHHHHhhccc--cc--cCChHHHHhcCCEEEEeccHHHHHhHHHHHHHHhCCeEEEecCCCcccc
Confidence 44 4555545667777777776654 21 24556778899999998878877766655542 3 69999887763112
Q ss_pred cccCCcEEeeCCHHHHHHHHHHHHhC
Q 010098 339 FKQFPNCRTYDGRNGFVEATLKALAE 364 (518)
Q Consensus 339 i~~~~~g~~~~d~~~l~~~i~~ll~~ 364 (518)
...+.. +..++...-++.+.+.+.+
T Consensus 100 ~~~~~~-~~~~~~~saae~va~~lp~ 124 (211)
T COG2085 100 GEPGDL-YLVPSEGSAAEIVAKLLPG 124 (211)
T ss_pred CCcccc-ccCCCCCcHHHHHHHHCCC
Confidence 222111 2224556666677776543
No 367
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=20.86 E-value=4.2e+02 Score=27.29 Aligned_cols=85 Identities=19% Similarity=0.211 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCe--EEE--------eCCCCCh-------------------H
Q 010098 246 ELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRV--------YPGRDHA-------------------D 296 (518)
Q Consensus 246 ~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~--v~~--------~~~~~~~-------------------~ 296 (518)
-++.+++...+...+.++++.|.|.---.+-+++...+.. ..+ +.++++. .
T Consensus 185 ~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~~ 264 (432)
T COG0281 185 ALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTLD 264 (432)
T ss_pred HHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhcccccc
Confidence 4566666666666789999999987765566666666654 111 1133221 1
Q ss_pred HHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEee
Q 010098 297 PIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCA 331 (518)
Q Consensus 297 ~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t 331 (518)
..+..+|+|+-.|..-.|--.+++.|+.. |+|-.
T Consensus 265 ~~~~~adv~iG~S~~G~~t~e~V~~Ma~~-PiIfa 298 (432)
T COG0281 265 LALAGADVLIGVSGVGAFTEEMVKEMAKH-PIIFA 298 (432)
T ss_pred ccccCCCEEEEcCCCCCcCHHHHHHhccC-CEEee
Confidence 13345789999998766888899999988 77655
No 368
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=20.72 E-value=6.6e+02 Score=22.99 Aligned_cols=91 Identities=12% Similarity=0.011 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEeCCCC--h---HHHHHHHHHc-CCeEEEeC--CCCChHHHHhhcCeeEecCC----
Q 010098 243 GYEELLGLLNIYHKELAGLEMDLYGNGED--F---DQIQRAAKKL-KLVVRVYP--GRDHADPIFHDYKVFLNPST---- 310 (518)
Q Consensus 243 g~~~ll~a~~~l~~~~~~~~l~ivG~g~~--~---~~l~~~~~~~-~l~v~~~~--~~~~~~~l~~~adv~v~pS~---- 310 (518)
+.+.+.+.+..+. .++.++.++..... . ..+.+..+++ |..+..+. ..++..+.+..||+.++|--
T Consensus 16 ~~~~l~~~l~~~~--~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~ 93 (212)
T cd03146 16 ALPAIDDLLLSLT--KARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGGGNTFN 93 (212)
T ss_pred chHHHHHHHHHhc--cCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECCchHHH
Confidence 4555555554443 23578888877543 2 3345555667 77655433 22354688899999998841
Q ss_pred -----CC-CCchHHHHHHHcCCeEEeeCCCC
Q 010098 311 -----TD-VVCTATAEALAMGKIVVCANHPS 335 (518)
Q Consensus 311 -----~E-~~~~~~lEAma~G~PVV~t~~g~ 335 (518)
.+ ++--.+-|+...|+|++.+..|.
T Consensus 94 ~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa 124 (212)
T cd03146 94 LLAQWREHGLDAILKAALERGVVYIGWSAGS 124 (212)
T ss_pred HHHHHHHcCHHHHHHHHHHCCCEEEEECHhH
Confidence 11 23333556667899999998875
No 369
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=20.71 E-value=1.5e+02 Score=27.11 Aligned_cols=42 Identities=14% Similarity=0.262 Sum_probs=25.0
Q ss_pred hHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcCCEEEEEeCCh
Q 010098 108 DITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNY 153 (518)
Q Consensus 108 ~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~ 153 (518)
.+.+.+++.+||++++...... + ...+.......+..+|...
T Consensus 71 ~~~~~l~~~~~D~iv~~~~~~i--i--~~~~l~~~~~~~iNiHpsl 112 (200)
T PRK05647 71 ALVEALDAYQPDLVVLAGFMRI--L--GPTFVSAYEGRIINIHPSL 112 (200)
T ss_pred HHHHHHHHhCcCEEEhHHhhhh--C--CHHHHhhccCCEEEEeCcc
Confidence 3566778889999987543222 2 2224444444567888553
No 370
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=20.59 E-value=6.5e+02 Score=26.01 Aligned_cols=112 Identities=18% Similarity=0.172 Sum_probs=68.0
Q ss_pred ccCCHHHHHHHHHH-HHHh---cCCcEEEEEeCC--------CChHHHHHHHHHcCCeEEE-eCCCCChHHHHh--hcCe
Q 010098 240 WSKGYEELLGLLNI-YHKE---LAGLEMDLYGNG--------EDFDQIQRAAKKLKLVVRV-YPGRDHADPIFH--DYKV 304 (518)
Q Consensus 240 ~~Kg~~~ll~a~~~-l~~~---~~~~~l~ivG~g--------~~~~~l~~~~~~~~l~v~~-~~~~~~~~~l~~--~adv 304 (518)
...|.+..++++-+ +... .++-.+-|+|.- .+.++++++.++.|+++.. +......+++-+ .|.+
T Consensus 131 ~~~G~~~a~~al~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~~~~~~~~~ei~~~~~A~~ 210 (427)
T cd01971 131 NYAGHEIVLKAIIDQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNILFGPESNGEELRSIPKAQF 210 (427)
T ss_pred cccHHHHHHHHHHHHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEEECCCCCHHHHHhcccCcE
Confidence 34788877777654 3221 223456677741 2458899999999999764 454556776666 4444
Q ss_pred eEecCCCCCCchHHHHHH--HcCCeEEeeC-CCCccccccCCcEEeeCCHHHHHHHHHHHHhC
Q 010098 305 FLNPSTTDVVCTATAEAL--AMGKIVVCAN-HPSNDFFKQFPNCRTYDGRNGFVEATLKALAE 364 (518)
Q Consensus 305 ~v~pS~~E~~~~~~lEAm--a~G~PVV~t~-~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~~ 364 (518)
-+..+. ..+....+.| -+|+|.+..+ .|. | .++.+++.+.|.+++..
T Consensus 211 niv~~~--~~g~~~a~~L~~~~giP~i~~~~~P~---------G--~~~t~~~l~~i~~~~g~ 260 (427)
T cd01971 211 NLVLSP--WVGLEFAQHLEEKYGQPYIHSPTLPI---------G--AKATAEFLRQVAKFAGI 260 (427)
T ss_pred EEEEcH--hhHHHHHHHHHHHhCCceEecCCCcc---------C--HHHHHHHHHHHHHHhCC
Confidence 333332 2356677777 4799988865 321 1 12456777777776653
No 371
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=20.59 E-value=2.3e+02 Score=29.57 Aligned_cols=131 Identities=14% Similarity=0.160 Sum_probs=74.4
Q ss_pred cEEEEEE-eecccCCHHHHHHHHHHHHHhcCCcEEEEEeC-CCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeE-
Q 010098 230 KGAYYIG-RMVWSKGYEELLGLLNIYHKELAGLEMDLYGN-GEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFL- 306 (518)
Q Consensus 230 ~~il~vG-r~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~-g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v- 306 (518)
.+++-.| .+.-.|-...+-|..+.|.++.-++++-|-=- |..+-.+.-+..+.+..-......+++.+-+.++|+.+
T Consensus 309 ~VvIVPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGHMNVLLAEa~VpYd~~~emdeiN~~f~~~Dv~lV 388 (463)
T PF02233_consen 309 KVVIVPGYGMAVAQAQHAVAELADLLEERGVEVKFAIHPVAGRMPGHMNVLLAEANVPYDIVKEMDEINPDFPDTDVVLV 388 (463)
T ss_dssp EEEEEESHHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-TTSSSSTTHHHHHHHHCT--GGGEEEHHHHGGGGGG-SEEEE
T ss_pred ceEEecCchHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcceEEEEecCCCHHHHhhhhhcccchhcCCEEEE
Confidence 4455555 34556667777777777777765566555211 33445555555555544222223445556688889654
Q ss_pred -------ecCCCC--C---CchHHHHHHHcCCeEEeeCC---C--C--ccccccCCcEEeeCCHHHHHHHHHH
Q 010098 307 -------NPSTTD--V---VCTATAEALAMGKIVVCANH---P--S--NDFFKQFPNCRTYDGRNGFVEATLK 360 (518)
Q Consensus 307 -------~pS~~E--~---~~~~~lEAma~G~PVV~t~~---g--~--~e~i~~~~~g~~~~d~~~l~~~i~~ 360 (518)
+|.-.| + +|++++|.--+..-||.-+. | + ++++...++-.++.|.++-.+++..
T Consensus 389 iGANDvVNPaA~~d~~SpI~GMPil~v~~ak~Viv~Krsm~~Gyagv~NpLF~~~nt~MlfGDAk~~~~~l~~ 461 (463)
T PF02233_consen 389 IGANDVVNPAAREDPNSPIYGMPILEVWKAKQVIVIKRSMSPGYAGVDNPLFYKDNTRMLFGDAKKTLEELVA 461 (463)
T ss_dssp ES-SGGG-CHHCCSTTSTTTTSS---GGGSSEEEEEESSS--TTTS-S-GGGGSTTEEEEES-HHHHHHHHHH
T ss_pred eccccccCchhccCCCCCCCCCeecchhhcCeEEEEEcCCCCCCCCCCCcceecCCcEEEeccHHHHHHHHHH
Confidence 565322 2 89999999999988888755 2 2 6777777777778888777666654
No 372
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=20.55 E-value=3.3e+02 Score=24.25 Aligned_cols=66 Identities=18% Similarity=0.140 Sum_probs=40.8
Q ss_pred EEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCC----------CCCCchHHHHHHHcCCeEEeeCCC
Q 010098 265 LYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPST----------TDVVCTATAEALAMGKIVVCANHP 334 (518)
Q Consensus 265 ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~----------~E~~~~~~lEAma~G~PVV~t~~g 334 (518)
++..|...+.+ +..++.+.++..+...++ +..+|.+++|.- ...+--.+.|+...|+|++..-.|
T Consensus 4 l~~qg~~~e~~-~~l~~~g~~v~~v~~~~~----l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G 78 (183)
T cd01749 4 LALQGDFREHI-RALERLGVEVIEVRTPED----LEGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAG 78 (183)
T ss_pred EEecCCcHHHH-HHHHHCCCeEEEECCHHH----hccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHH
Confidence 33444444444 555677777666554322 567888888842 122333467888899999998665
Q ss_pred C
Q 010098 335 S 335 (518)
Q Consensus 335 ~ 335 (518)
.
T Consensus 79 ~ 79 (183)
T cd01749 79 L 79 (183)
T ss_pred H
Confidence 3
No 373
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=20.51 E-value=3.7e+02 Score=24.17 Aligned_cols=87 Identities=15% Similarity=0.089 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCCh-HHHHHHHHHcCCeEEEeCCCCChH---HHHhhc--CeeEecCCCCCCchH
Q 010098 244 YEELLGLLNIYHKELAGLEMDLYGNGEDF-DQIQRAAKKLKLVVRVYPGRDHAD---PIFHDY--KVFLNPSTTDVVCTA 317 (518)
Q Consensus 244 ~~~ll~a~~~l~~~~~~~~l~ivG~g~~~-~~l~~~~~~~~l~v~~~~~~~~~~---~l~~~a--dv~v~pS~~E~~~~~ 317 (518)
+..+...+.++++++|+.++++....+.- +..++.... ... ..+.+.|... .+++.. |++|.- .+|-+|+-
T Consensus 34 ~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~-~v~-~~~~P~D~~~~~~rfl~~~~P~~~i~~-EtElWPnl 110 (186)
T PF04413_consen 34 VNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPD-RVD-VQYLPLDFPWAVRRFLDHWRPDLLIWV-ETELWPNL 110 (186)
T ss_dssp HHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GG-G-S-EEE---SSHHHHHHHHHHH--SEEEEE-S----HHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCC-CeE-EEEeCccCHHHHHHHHHHhCCCEEEEE-ccccCHHH
Confidence 44566666677778899999998875543 333333221 222 3345555433 555554 555543 46889999
Q ss_pred HHHHHHcCCeEEeeCC
Q 010098 318 TAEALAMGKIVVCANH 333 (518)
Q Consensus 318 ~lEAma~G~PVV~t~~ 333 (518)
+.+|-..|+|++.-+.
T Consensus 111 l~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 111 LREAKRRGIPVVLVNA 126 (186)
T ss_dssp HHH-----S-EEEEEE
T ss_pred HHHHhhcCCCEEEEee
Confidence 9999999999988754
No 374
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=20.46 E-value=6.8e+02 Score=24.07 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=20.4
Q ss_pred hcCeeEe-cCCCCCCchHHHHHHHcCCeEEeeCCC
Q 010098 301 DYKVFLN-PSTTDVVCTATAEALAMGKIVVCANHP 334 (518)
Q Consensus 301 ~adv~v~-pS~~E~~~~~~lEAma~G~PVV~t~~g 334 (518)
..|.++. |...+...-.+-++...|+|||..+..
T Consensus 54 ~vDgIIi~~~~~~~~~~~l~~~~~~~iPvV~~d~~ 88 (302)
T TIGR02634 54 GVDVLVIIPQNGQVLSNAVQEAKDEGIKVVAYDRL 88 (302)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHCCCeEEEecCc
Confidence 3564444 322222233456678899999998764
No 375
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=20.45 E-value=1.2e+02 Score=29.60 Aligned_cols=40 Identities=13% Similarity=-0.015 Sum_probs=28.5
Q ss_pred ccEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEe
Q 010098 5 QQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVI 45 (518)
Q Consensus 5 ~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~ 45 (518)
++||+++.....+...-.-......++.|.+.| |+|..+-
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g-~~~~~~~ 42 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQG-YDAVGVD 42 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcC-CEEEEEc
Confidence 479999998777765442233345668899988 9998773
No 376
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=20.42 E-value=6.2e+02 Score=26.12 Aligned_cols=70 Identities=7% Similarity=-0.008 Sum_probs=43.3
Q ss_pred cEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCCc
Q 010098 261 LEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPSN 336 (518)
Q Consensus 261 ~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~~ 336 (518)
-++.++.. ..+..+.++++++- .. ..+.++..+.+..+|+.|+.+....+ +.. ..+..+.|.+.-|.+-+
T Consensus 206 ~~I~V~nR--t~~ra~~La~~~~~-~~-~~~~~~l~~~l~~aDiVI~aT~a~~~-vi~-~~~~~~~~~~~iDLavP 275 (414)
T PRK13940 206 KQIMLANR--TIEKAQKITSAFRN-AS-AHYLSELPQLIKKADIIIAAVNVLEY-IVT-CKYVGDKPRVFIDISIP 275 (414)
T ss_pred CEEEEECC--CHHHHHHHHHHhcC-Ce-EecHHHHHHHhccCCEEEECcCCCCe-eEC-HHHhCCCCeEEEEeCCC
Confidence 46777775 34555677776641 11 12345667889999999988754332 111 23445789888888653
No 377
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.37 E-value=2.3e+02 Score=23.16 Aligned_cols=72 Identities=8% Similarity=0.048 Sum_probs=40.4
Q ss_pred EEEEEeCCCCh---HHHHHHHHHcCCeEEEeCCCCChH---HHHhhcCeeEecCCC-CC--CchHHHHHHHcCCeEEeeC
Q 010098 262 EMDLYGNGEDF---DQIQRAAKKLKLVVRVYPGRDHAD---PIFHDYKVFLNPSTT-DV--VCTATAEALAMGKIVVCAN 332 (518)
Q Consensus 262 ~l~ivG~g~~~---~~l~~~~~~~~l~v~~~~~~~~~~---~l~~~adv~v~pS~~-E~--~~~~~lEAma~G~PVV~t~ 332 (518)
++.++|.|... +.+.....+.+..+.+..+..... ..+..-|+++.-|.. ++ .-..+-.|-..|.|||+--
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT 81 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAIT 81 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEe
Confidence 46788887653 344444455565555543322222 233455787777753 22 3334555667799988874
Q ss_pred C
Q 010098 333 H 333 (518)
Q Consensus 333 ~ 333 (518)
.
T Consensus 82 ~ 82 (128)
T cd05014 82 G 82 (128)
T ss_pred C
Confidence 4
No 378
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=20.30 E-value=3.3e+02 Score=28.49 Aligned_cols=77 Identities=14% Similarity=0.161 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCcEEEEEeC-----CCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcC-eeEecCCCCCCchHHHHHHH
Q 010098 250 LLNIYHKELAGLEMDLYGN-----GEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYK-VFLNPSTTDVVCTATAEALA 323 (518)
Q Consensus 250 a~~~l~~~~~~~~l~ivG~-----g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~ad-v~v~pS~~E~~~~~~lEAma 323 (518)
.++..-.+.|...+.+--. |.....+....+ .-.++++..--+.-.++...| |++.+|.. =+||+.
T Consensus 171 m~~~ai~enp~a~i~~kthpdvl~gkkqg~lt~~~~--~~r~~ll~edfnpisll~~~dkvy~~ts~m------gfeall 242 (671)
T COG3563 171 MFQTAINENPQADIWVKTHPDVLCGKKQGYLTQLSQ--QHRVHLLAEDFNPISLLQNVDKVYCVTSQM------GFEALL 242 (671)
T ss_pred HHHHHHhcCCcccEEEEeCCchhcCcccchhhhhcc--CceEEEecccCChHHHHHhcceeEEeeccc------cHHHHh
Confidence 3333336777766655332 222333333322 112444443334447888887 88877752 379999
Q ss_pred cCCeEEeeCCC
Q 010098 324 MGKIVVCANHP 334 (518)
Q Consensus 324 ~G~PVV~t~~g 334 (518)
||+|+++...+
T Consensus 243 ~~~~~~~fg~p 253 (671)
T COG3563 243 CGKPLTTFGLP 253 (671)
T ss_pred cCCceeeecch
Confidence 99999998664
No 379
>PRK06436 glycerate dehydrogenase; Provisional
Probab=20.01 E-value=3.3e+02 Score=26.70 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=26.6
Q ss_pred CChHHHHhhcCeeEe--cCCCCC---CchHHHHHHHcCCeEEeeCC
Q 010098 293 DHADPIFHDYKVFLN--PSTTDV---VCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 293 ~~~~~l~~~adv~v~--pS~~E~---~~~~~lEAma~G~PVV~t~~ 333 (518)
.+.+++++.||+.++ |...|+ ++-..+++|--|.-+|-+..
T Consensus 165 ~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sR 210 (303)
T PRK06436 165 MEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVAR 210 (303)
T ss_pred CCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCC
Confidence 467799999996554 443333 55667888877765555533
Done!