Query 010098
Match_columns 518
No_of_seqs 416 out of 2036
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 19:51:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010098.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010098hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3okp_A GDP-mannose-dependent a 100.0 5.4E-38 1.9E-42 320.3 26.9 351 1-395 1-381 (394)
2 3fro_A GLGA glycogen synthase; 100.0 4.4E-38 1.5E-42 325.5 24.6 368 4-395 1-432 (439)
3 3c48_A Predicted glycosyltrans 100.0 7E-37 2.4E-41 317.1 24.5 365 5-394 20-426 (438)
4 2x6q_A Trehalose-synthase TRET 100.0 2.1E-36 7.2E-41 311.5 25.8 348 4-393 39-414 (416)
5 2jjm_A Glycosyl transferase, g 100.0 1.9E-36 6.5E-41 309.5 25.3 351 6-394 14-386 (394)
6 2r60_A Glycosyl transferase, g 100.0 1.5E-36 5.1E-41 320.2 21.7 371 1-394 4-460 (499)
7 2qzs_A Glycogen synthase; glyc 100.0 1.5E-35 5.2E-40 311.3 24.1 371 6-394 1-477 (485)
8 3s28_A Sucrose synthase 1; gly 100.0 5E-35 1.7E-39 318.9 26.6 369 6-394 279-770 (816)
9 2gek_A Phosphatidylinositol ma 100.0 1.1E-35 3.7E-40 304.7 18.9 349 4-395 19-385 (406)
10 1rzu_A Glycogen synthase 1; gl 100.0 1.5E-35 5.1E-40 311.4 20.1 372 6-394 1-476 (485)
11 3vue_A GBSS-I, granule-bound s 100.0 9E-35 3.1E-39 307.1 21.8 212 181-394 241-512 (536)
12 3oy2_A Glycosyltransferase B73 100.0 8.6E-35 3E-39 299.1 19.4 334 6-395 1-392 (413)
13 2iw1_A Lipopolysaccharide core 100.0 2.3E-35 7.8E-40 298.8 13.7 344 6-393 1-371 (374)
14 2iuy_A Avigt4, glycosyltransfe 100.0 2.8E-34 9.4E-39 287.8 20.9 298 5-394 3-336 (342)
15 2x0d_A WSAF; GT4 family, trans 100.0 6.8E-31 2.3E-35 269.4 16.5 331 4-391 45-407 (413)
16 1f0k_A MURG, UDP-N-acetylgluco 100.0 9.7E-29 3.3E-33 249.4 17.8 334 1-394 2-358 (364)
17 2hy7_A Glucuronosyltransferase 100.0 4.1E-28 1.4E-32 248.6 17.6 239 117-397 124-383 (406)
18 2vsy_A XCC0866; transferase, g 100.0 5.6E-28 1.9E-32 258.8 17.7 325 4-394 204-560 (568)
19 3beo_A UDP-N-acetylglucosamine 99.9 1E-26 3.4E-31 235.5 16.7 266 106-391 84-374 (375)
20 2bfw_A GLGA glycogen synthase; 99.9 7.1E-25 2.4E-29 201.8 13.5 169 203-374 3-193 (200)
21 1uqt_A Alpha, alpha-trehalose- 99.9 6.8E-25 2.3E-29 227.9 14.8 188 200-393 222-454 (482)
22 3qhp_A Type 1 capsular polysac 99.9 3.7E-25 1.2E-29 197.5 10.8 155 229-385 2-166 (166)
23 1vgv_A UDP-N-acetylglucosamine 99.9 1.4E-25 4.8E-30 227.9 7.7 272 106-394 75-377 (384)
24 3nb0_A Glycogen [starch] synth 99.9 2.1E-23 7.3E-28 217.7 21.2 276 114-394 178-634 (725)
25 1v4v_A UDP-N-acetylglucosamine 99.9 2.7E-23 9.2E-28 210.6 13.1 267 107-394 81-365 (376)
26 2xci_A KDO-transferase, 3-deox 99.9 2.9E-21 1E-25 195.4 22.4 233 107-374 101-357 (374)
27 2f9f_A First mannosyl transfer 99.9 2.2E-22 7.6E-27 181.6 12.5 141 223-367 17-165 (177)
28 3t5t_A Putative glycosyltransf 99.9 4.4E-21 1.5E-25 197.1 20.9 264 116-394 148-474 (496)
29 3otg_A CALG1; calicheamicin, T 99.8 3.4E-19 1.2E-23 182.5 15.2 261 107-392 120-409 (412)
30 3s2u_A UDP-N-acetylglucosamine 99.8 1.4E-17 4.7E-22 167.8 18.1 239 106-374 81-336 (365)
31 3dzc_A UDP-N-acetylglucosamine 99.7 3.8E-18 1.3E-22 173.7 11.5 340 6-390 26-394 (396)
32 3ot5_A UDP-N-acetylglucosamine 99.7 1.4E-17 4.7E-22 169.9 13.0 342 5-391 27-393 (403)
33 3rhz_A GTF3, nucleotide sugar 99.7 3.2E-18 1.1E-22 169.7 7.7 240 117-387 74-330 (339)
34 3tsa_A SPNG, NDP-rhamnosyltran 99.7 6.7E-16 2.3E-20 156.9 19.6 261 106-391 103-388 (391)
35 4fzr_A SSFS6; structural genom 99.7 5.3E-16 1.8E-20 158.1 15.1 251 107-387 113-396 (398)
36 2iyf_A OLED, oleandomycin glyc 99.7 1.3E-15 4.6E-20 156.7 17.5 153 229-392 233-400 (430)
37 3ia7_A CALG4; glycosysltransfe 99.6 6.4E-14 2.2E-18 142.6 17.6 150 229-392 232-399 (402)
38 3oti_A CALG3; calicheamicin, T 99.6 2.1E-14 7.2E-19 146.3 13.4 147 229-390 233-396 (398)
39 3rsc_A CALG2; TDP, enediyne, s 99.5 4.6E-13 1.6E-17 137.0 18.5 149 229-391 248-413 (415)
40 2p6p_A Glycosyl transferase; X 99.5 3.9E-13 1.3E-17 136.1 16.7 230 106-366 96-349 (384)
41 4hwg_A UDP-N-acetylglucosamine 99.4 3.2E-12 1.1E-16 129.0 15.2 244 106-373 83-353 (385)
42 2yjn_A ERYCIII, glycosyltransf 99.3 1.4E-11 4.8E-16 127.1 17.0 149 229-391 268-435 (441)
43 3h4t_A Glycosyltransferase GTF 99.3 2.2E-10 7.4E-15 116.8 19.8 147 229-391 222-382 (404)
44 2iya_A OLEI, oleandomycin glyc 99.3 6E-10 2E-14 114.2 23.0 126 229-366 256-391 (424)
45 4amg_A Snogd; transferase, pol 99.2 2.4E-11 8.1E-16 123.5 8.5 127 229-366 238-370 (400)
46 3q3e_A HMW1C-like glycosyltran 99.1 3.2E-10 1.1E-14 118.4 11.9 260 107-392 339-622 (631)
47 2o6l_A UDP-glucuronosyltransfe 98.8 7.2E-09 2.5E-13 91.8 8.5 121 229-366 22-156 (170)
48 1l5w_A Maltodextrin phosphoryl 98.8 2.6E-08 8.8E-13 106.2 13.8 168 226-394 523-731 (796)
49 1rrv_A Glycosyltransferase GTF 98.8 1.3E-07 4.6E-12 96.4 18.3 121 229-366 238-371 (416)
50 2c4m_A Glycogen phosphorylase; 98.8 8.3E-08 2.8E-12 102.4 16.7 167 226-393 513-719 (796)
51 1iir_A Glycosyltransferase GTF 98.8 5.4E-08 1.8E-12 99.3 14.8 121 229-366 239-370 (415)
52 3hbm_A UDP-sugar hydrolase; PS 98.5 2.8E-06 9.5E-11 81.3 15.2 187 108-333 60-252 (282)
53 2gj4_A Glycogen phosphorylase, 98.2 3.2E-06 1.1E-10 90.6 10.8 166 226-393 547-754 (824)
54 4gyw_A UDP-N-acetylglucosamine 98.1 2.5E-05 8.6E-10 85.0 13.0 171 220-393 514-705 (723)
55 2vch_A Hydroquinone glucosyltr 97.6 0.014 4.7E-07 60.3 23.9 75 289-365 343-430 (480)
56 1psw_A ADP-heptose LPS heptosy 97.5 0.006 2.1E-07 59.9 18.7 98 229-333 181-288 (348)
57 3tov_A Glycosyl transferase fa 97.0 0.035 1.2E-06 54.6 18.4 156 224-391 180-346 (349)
58 2jzc_A UDP-N-acetylglucosamine 96.5 0.0041 1.4E-07 56.9 6.9 48 283-334 113-161 (224)
59 2c1x_A UDP-glucose flavonoid 3 96.3 0.0079 2.7E-07 61.6 8.1 126 229-365 272-413 (456)
60 3hbf_A Flavonoid 3-O-glucosylt 96.0 0.024 8.3E-07 57.8 9.8 131 229-365 274-415 (454)
61 2pq6_A UDP-glucuronosyl/UDP-gl 95.5 0.063 2.1E-06 55.3 10.7 125 230-365 297-440 (482)
62 2acv_A Triterpene UDP-glucosyl 95.3 0.082 2.8E-06 54.1 11.1 127 229-363 277-424 (463)
63 1ygp_A Yeast glycogen phosphor 92.7 0.92 3.1E-05 48.8 12.4 130 227-356 598-768 (879)
64 2gt1_A Lipopolysaccharide hept 92.3 0.8 2.7E-05 44.0 10.9 128 229-364 179-322 (326)
65 3l7i_A Teichoic acid biosynthe 84.8 8.7 0.0003 41.4 13.4 171 182-363 479-682 (729)
66 3gt7_A Sensor protein; structu 79.0 13 0.00043 30.6 9.7 108 260-367 7-130 (154)
67 3grc_A Sensor protein, kinase; 78.0 21 0.0007 28.4 10.5 106 260-365 6-128 (140)
68 3cg4_A Response regulator rece 74.5 22 0.00075 28.3 9.8 104 260-363 7-126 (142)
69 2zay_A Response regulator rece 74.4 16 0.00055 29.4 9.0 106 260-365 8-129 (147)
70 3jte_A Response regulator rece 73.6 22 0.00076 28.4 9.6 103 261-363 4-122 (143)
71 3cnb_A DNA-binding response re 73.1 26 0.00089 27.8 10.0 107 260-366 8-132 (143)
72 4had_A Probable oxidoreductase 70.6 17 0.00057 35.0 9.4 73 256-333 44-118 (350)
73 2gkg_A Response regulator homo 70.4 20 0.00069 27.6 8.4 105 261-365 6-126 (127)
74 3lte_A Response regulator; str 70.1 30 0.001 27.0 9.5 106 260-365 6-126 (132)
75 3h5i_A Response regulator/sens 69.6 37 0.0013 26.9 10.1 104 260-363 5-123 (140)
76 3uuw_A Putative oxidoreductase 68.8 14 0.00048 34.8 8.2 72 256-333 27-98 (308)
77 3gl9_A Response regulator; bet 68.6 29 0.00099 26.9 9.0 102 262-363 4-121 (122)
78 2f62_A Nucleoside 2-deoxyribos 67.6 31 0.0011 29.2 9.1 37 297-333 63-106 (161)
79 3nhm_A Response regulator; pro 67.3 39 0.0013 26.3 9.7 104 261-365 5-123 (133)
80 3nva_A CTP synthase; rossman f 66.1 59 0.002 33.1 12.2 204 116-334 134-388 (535)
81 1k68_A Phytochrome response re 65.4 36 0.0012 26.7 9.1 103 261-363 3-130 (140)
82 3mz0_A Inositol 2-dehydrogenas 65.2 26 0.00088 33.5 9.4 73 257-333 24-98 (344)
83 4e7p_A Response regulator; DNA 64.6 35 0.0012 27.5 9.1 106 261-366 21-142 (150)
84 3hdv_A Response regulator; PSI 64.3 46 0.0016 26.0 9.6 107 260-366 7-129 (136)
85 3tqr_A Phosphoribosylglycinami 63.9 37 0.0013 30.2 9.3 42 108-153 74-115 (215)
86 1dbw_A Transcriptional regulat 63.8 48 0.0017 25.5 10.5 105 260-364 3-121 (126)
87 3t6k_A Response regulator rece 63.6 50 0.0017 26.1 9.7 105 261-365 5-125 (136)
88 3f6c_A Positive transcription 63.1 51 0.0018 25.6 10.6 107 261-367 2-123 (134)
89 3hdg_A Uncharacterized protein 62.8 28 0.00095 27.5 7.9 105 260-364 7-125 (137)
90 2pln_A HP1043, response regula 62.7 40 0.0014 26.5 8.9 102 260-364 18-133 (137)
91 3ehd_A Uncharacterized conserv 62.4 14 0.00048 31.4 5.9 66 297-362 65-161 (162)
92 3hzh_A Chemotaxis response reg 61.9 32 0.0011 28.1 8.3 103 261-363 37-156 (157)
93 3u80_A 3-dehydroquinate dehydr 61.9 60 0.0021 26.9 9.4 90 273-362 36-146 (151)
94 4hkt_A Inositol 2-dehydrogenas 61.8 30 0.001 32.8 9.1 70 257-333 24-95 (331)
95 2qr3_A Two-component system re 61.7 31 0.0011 27.2 8.0 106 261-366 4-128 (140)
96 2d1p_A TUSD, hypothetical UPF0 61.5 8.1 0.00028 31.9 4.2 40 5-46 12-52 (140)
97 2rjn_A Response regulator rece 61.4 48 0.0016 26.8 9.3 104 260-363 7-125 (154)
98 3kht_A Response regulator; PSI 60.6 42 0.0015 26.7 8.8 104 260-363 5-127 (144)
99 3ilh_A Two component response 60.2 59 0.002 25.6 9.6 107 260-366 9-141 (146)
100 1mb3_A Cell division response 60.2 50 0.0017 25.2 8.9 103 262-364 3-121 (124)
101 3hv2_A Response regulator/HD d 59.4 57 0.002 26.2 9.5 103 261-363 15-132 (153)
102 1qkk_A DCTD, C4-dicarboxylate 59.0 34 0.0012 27.7 8.0 103 261-363 4-120 (155)
103 4fb5_A Probable oxidoreductase 59.0 21 0.0007 34.7 7.5 73 256-333 52-126 (393)
104 3m6m_D Sensory/regulatory prot 58.7 46 0.0016 26.6 8.6 105 260-364 14-136 (143)
105 2hy5_A Putative sulfurtransfer 58.6 9.1 0.00031 31.0 4.0 39 6-46 1-40 (130)
106 3e9m_A Oxidoreductase, GFO/IDH 57.9 58 0.002 30.8 10.4 78 247-333 20-99 (330)
107 3f6p_A Transcriptional regulat 57.8 57 0.002 24.9 8.8 102 262-363 4-118 (120)
108 1fy2_A Aspartyl dipeptidase; s 57.8 23 0.00079 31.8 7.0 89 244-335 17-123 (229)
109 1jbe_A Chemotaxis protein CHEY 56.9 64 0.0022 24.8 9.2 104 260-363 4-124 (128)
110 3cg0_A Response regulator rece 56.9 58 0.002 25.5 8.9 104 260-363 9-127 (140)
111 3db2_A Putative NADPH-dependen 56.8 38 0.0013 32.5 8.9 72 256-333 25-98 (354)
112 3heb_A Response regulator rece 56.6 49 0.0017 26.6 8.5 103 261-363 5-134 (152)
113 3n8k_A 3-dehydroquinate dehydr 56.5 64 0.0022 27.2 8.8 91 273-363 60-168 (172)
114 1rcu_A Conserved hypothetical 56.5 19 0.00064 31.6 5.9 62 297-361 114-192 (195)
115 1e2b_A Enzyme IIB-cellobiose; 56.3 12 0.0004 29.3 4.1 60 263-323 7-71 (106)
116 2qzj_A Two-component response 56.2 50 0.0017 26.0 8.4 104 260-363 4-120 (136)
117 3moi_A Probable dehydrogenase; 56.2 37 0.0013 33.1 8.8 71 257-333 24-96 (387)
118 4h3v_A Oxidoreductase domain p 56.0 24 0.00081 34.2 7.4 82 247-333 21-107 (390)
119 3ec7_A Putative dehydrogenase; 55.9 38 0.0013 32.6 8.8 73 257-333 45-119 (357)
120 3i42_A Response regulator rece 55.5 50 0.0017 25.5 8.1 105 261-365 4-123 (127)
121 2a9o_A Response regulator; ess 55.0 65 0.0022 24.3 9.0 103 262-364 3-118 (120)
122 2qxy_A Response regulator; reg 54.9 42 0.0015 26.5 7.8 106 261-366 5-123 (142)
123 3ezy_A Dehydrogenase; structur 53.9 53 0.0018 31.3 9.4 72 257-333 23-96 (344)
124 3lua_A Response regulator rece 53.7 24 0.00081 28.1 5.9 107 260-366 4-129 (140)
125 2j48_A Two-component sensor ki 53.1 31 0.0011 25.9 6.4 102 262-363 3-117 (119)
126 3eod_A Protein HNR; response r 53.1 55 0.0019 25.3 8.0 105 260-364 7-126 (130)
127 3n53_A Response regulator rece 53.0 62 0.0021 25.5 8.5 102 261-363 4-121 (140)
128 3crn_A Response regulator rece 52.9 79 0.0027 24.6 9.3 103 261-363 4-120 (132)
129 3cfy_A Putative LUXO repressor 52.8 82 0.0028 24.7 9.2 102 262-363 6-121 (137)
130 3mc3_A DSRE/DSRF-like family p 52.6 12 0.00041 30.5 3.8 40 5-46 15-54 (134)
131 3rc1_A Sugar 3-ketoreductase; 52.1 46 0.0016 31.9 8.6 71 257-333 49-121 (350)
132 2pl1_A Transcriptional regulat 51.7 75 0.0026 24.0 9.7 102 262-363 2-117 (121)
133 3u3x_A Oxidoreductase; structu 51.7 82 0.0028 30.3 10.4 92 230-333 27-120 (361)
134 1zgz_A Torcad operon transcrip 51.6 76 0.0026 24.0 9.1 102 262-363 4-118 (122)
135 3cz5_A Two-component response 51.3 50 0.0017 26.6 7.7 106 260-365 5-126 (153)
136 1zh8_A Oxidoreductase; TM0312, 50.8 57 0.0019 31.1 9.0 70 259-333 43-114 (340)
137 1ys7_A Transcriptional regulat 50.8 1.2E+02 0.0042 26.2 10.9 104 260-363 7-124 (233)
138 3h1g_A Chemotaxis protein CHEY 50.5 82 0.0028 24.3 8.7 104 261-364 6-127 (129)
139 3eul_A Possible nitrate/nitrit 50.2 93 0.0032 24.8 9.3 107 260-366 15-137 (152)
140 3snk_A Response regulator CHEY 50.1 28 0.00096 27.5 5.8 105 260-364 14-133 (135)
141 2rdm_A Response regulator rece 50.0 85 0.0029 24.1 9.6 105 260-366 5-125 (132)
142 1k66_A Phytochrome response re 49.8 62 0.0021 25.5 8.0 104 260-363 6-137 (149)
143 4gi5_A Quinone reductase; prot 49.7 14 0.00047 34.6 4.1 40 3-45 20-60 (280)
144 2jba_A Phosphate regulon trans 49.6 50 0.0017 25.4 7.2 100 262-364 4-122 (127)
145 3rot_A ABC sugar transporter, 49.5 97 0.0033 28.3 10.3 64 301-364 61-126 (297)
146 2hy5_B Intracellular sulfur ox 49.3 16 0.00055 29.9 4.0 43 1-46 1-44 (136)
147 2ho3_A Oxidoreductase, GFO/IDH 49.1 58 0.002 30.7 8.8 70 258-332 23-93 (325)
148 1ydw_A AX110P-like protein; st 48.5 1.1E+02 0.0039 29.1 10.9 79 246-332 20-102 (362)
149 2qsj_A DNA-binding response re 48.2 66 0.0022 25.8 8.0 107 260-366 3-126 (154)
150 2qvg_A Two component response 48.0 97 0.0033 24.2 8.9 104 260-363 7-134 (143)
151 3euw_A MYO-inositol dehydrogen 47.5 68 0.0023 30.5 9.0 71 257-333 25-97 (344)
152 3q2i_A Dehydrogenase; rossmann 47.4 86 0.003 29.9 9.8 69 259-333 37-107 (354)
153 3cea_A MYO-inositol 2-dehydrog 47.4 87 0.003 29.6 9.8 70 257-331 30-101 (346)
154 3c97_A Signal transduction his 46.8 1E+02 0.0035 24.1 9.5 104 261-364 11-130 (140)
155 3zqu_A Probable aromatic acid 46.8 21 0.00071 31.7 4.6 39 1-46 1-39 (209)
156 4dad_A Putative pilus assembly 46.5 64 0.0022 25.6 7.6 105 261-365 21-142 (146)
157 3r0j_A Possible two component 46.5 1E+02 0.0034 27.4 9.6 104 260-363 23-140 (250)
158 3a10_A Response regulator; pho 46.1 91 0.0031 23.3 9.6 101 262-362 3-115 (116)
159 2glx_A 1,5-anhydro-D-fructose 45.9 80 0.0027 29.7 9.2 68 259-331 23-92 (332)
160 3sir_A Caspase; hydrolase; 2.6 45.3 21 0.00072 32.9 4.6 45 1-46 15-65 (259)
161 3kto_A Response regulator rece 45.2 32 0.0011 27.2 5.4 102 261-365 7-127 (136)
162 1srr_A SPO0F, sporulation resp 45.2 87 0.003 23.8 8.0 103 261-363 4-120 (124)
163 3lwz_A 3-dehydroquinate dehydr 45.1 35 0.0012 28.4 5.3 90 273-362 39-146 (153)
164 1kgs_A DRRD, DNA binding respo 44.9 1.4E+02 0.0047 25.7 10.2 104 261-364 3-120 (225)
165 3mcu_A Dipicolinate synthase, 44.8 29 0.00099 30.7 5.2 40 1-46 1-41 (207)
166 3ty2_A 5'-nucleotidase SURE; s 44.7 25 0.00085 32.3 4.9 38 4-48 10-47 (261)
167 3kip_A 3-dehydroquinase, type 44.2 98 0.0034 26.0 8.0 63 301-363 83-157 (167)
168 1vi6_A 30S ribosomal protein S 44.0 52 0.0018 29.0 6.7 96 241-339 50-154 (208)
169 1mvo_A PHOP response regulator 44.0 1.1E+02 0.0037 23.6 9.8 106 261-366 4-123 (136)
170 3nbm_A PTS system, lactose-spe 43.9 51 0.0017 25.7 6.0 60 273-333 24-86 (108)
171 2m1z_A LMO0427 protein; homolo 43.9 82 0.0028 24.4 7.1 76 273-363 23-104 (106)
172 3evn_A Oxidoreductase, GFO/IDH 43.7 42 0.0014 31.8 6.8 79 246-333 19-99 (329)
173 4gqa_A NAD binding oxidoreduct 43.7 1.1E+02 0.0037 29.9 10.0 83 246-333 40-128 (412)
174 2q5c_A NTRC family transcripti 43.7 1.6E+02 0.0055 25.4 10.2 95 244-362 80-181 (196)
175 3ohs_X Trans-1,2-dihydrobenzen 43.6 83 0.0028 29.7 8.9 69 260-333 28-98 (334)
176 2gwr_A DNA-binding response re 43.5 1.2E+02 0.0041 26.6 9.6 105 261-365 6-123 (238)
177 3kkl_A Probable chaperone prot 43.4 29 0.00099 31.6 5.2 43 1-46 1-50 (244)
178 3od5_A Caspase-6; caspase doma 43.1 23 0.00078 33.0 4.6 44 1-45 16-66 (278)
179 1xhf_A DYE resistance, aerobic 42.7 1.1E+02 0.0037 23.2 9.5 103 261-363 4-119 (123)
180 2l2q_A PTS system, cellobiose- 42.3 95 0.0033 23.9 7.5 90 263-363 8-104 (109)
181 1i3c_A Response regulator RCP1 42.3 1.3E+02 0.0044 23.9 9.1 104 260-363 8-136 (149)
182 3u7q_A Nitrogenase molybdenum- 42.3 2.5E+02 0.0085 28.3 12.5 90 241-332 192-298 (492)
183 3h11_B Caspase-8; cell death, 42.1 25 0.00084 32.6 4.6 45 1-46 12-70 (271)
184 2iz6_A Molybdenum cofactor car 42.0 14 0.00046 31.9 2.6 64 298-364 104-174 (176)
185 3ff4_A Uncharacterized protein 41.7 26 0.00088 28.1 4.1 38 3-46 2-39 (122)
186 3lqk_A Dipicolinate synthase s 41.3 34 0.0012 30.1 5.1 40 1-46 3-43 (201)
187 2j32_A Caspase-3; Pro-caspase3 40.9 27 0.00092 31.9 4.6 44 1-45 11-61 (250)
188 3v5n_A Oxidoreductase; structu 40.7 88 0.003 30.7 8.8 74 257-333 61-142 (417)
189 1p9l_A Dihydrodipicolinate red 40.6 1.1E+02 0.0036 27.8 8.6 73 262-334 2-78 (245)
190 1jx7_A Hypothetical protein YC 40.4 24 0.00083 27.5 3.7 39 6-46 2-42 (117)
191 1nw9_B Caspase 9, apoptosis-re 40.1 31 0.0011 32.0 5.0 45 1-46 16-67 (277)
192 1xv5_A AGT, DNA alpha-glucosyl 40.1 23 0.0008 31.0 3.7 306 6-365 2-368 (401)
193 3dty_A Oxidoreductase, GFO/IDH 39.6 1.1E+02 0.0037 29.8 9.2 72 258-332 37-116 (398)
194 4f3y_A DHPR, dihydrodipicolina 39.3 37 0.0013 31.4 5.3 43 292-334 64-106 (272)
195 3h05_A Uncharacterized protein 39.3 25 0.00085 30.2 3.9 70 244-327 82-151 (177)
196 1m72_A Caspase-1; caspase, cys 39.1 29 0.001 32.1 4.6 45 1-46 27-77 (272)
197 4fyk_A Deoxyribonucleoside 5'- 39.0 57 0.002 27.2 5.9 66 297-364 64-142 (152)
198 1p6q_A CHEY2; chemotaxis, sign 38.6 1.1E+02 0.0039 23.3 7.7 104 261-364 7-127 (129)
199 3j20_B 30S ribosomal protein S 38.6 43 0.0015 29.4 5.2 98 239-339 44-150 (202)
200 1h6d_A Precursor form of gluco 38.4 43 0.0015 33.3 6.0 74 257-332 105-181 (433)
201 1tlt_A Putative oxidoreductase 38.4 75 0.0026 29.8 7.6 70 257-332 27-96 (319)
202 1tmy_A CHEY protein, TMY; chem 38.2 1.2E+02 0.0043 22.6 8.4 102 261-362 3-119 (120)
203 3p45_A Caspase-6; protease, hu 38.0 35 0.0012 29.4 4.6 45 1-46 39-90 (179)
204 3m9w_A D-xylose-binding peripl 38.0 1.7E+02 0.0057 26.8 10.0 59 301-362 58-118 (313)
205 2ayx_A Sensor kinase protein R 37.9 1.9E+02 0.0066 25.7 10.1 50 314-363 187-246 (254)
206 1yio_A Response regulatory pro 37.8 1.1E+02 0.0039 26.0 8.2 103 261-363 5-121 (208)
207 3bch_A 40S ribosomal protein S 37.8 65 0.0022 29.3 6.5 98 240-339 84-190 (253)
208 3kb6_A D-lactate dehydrogenase 37.7 94 0.0032 29.6 8.1 42 293-334 186-232 (334)
209 3uug_A Multiple sugar-binding 37.7 1.5E+02 0.005 27.4 9.6 61 301-363 59-121 (330)
210 1qzu_A Hypothetical protein MD 37.6 49 0.0017 29.1 5.6 39 2-46 16-55 (206)
211 2dko_A Caspase-3; low barrier 37.6 38 0.0013 28.0 4.6 45 1-46 11-62 (146)
212 3m2t_A Probable dehydrogenase; 37.6 47 0.0016 32.0 6.1 73 256-333 26-100 (359)
213 3kcn_A Adenylate cyclase homol 37.0 1.4E+02 0.0048 23.7 8.3 102 261-363 5-122 (151)
214 1d4o_A NADP(H) transhydrogenas 36.9 54 0.0018 27.8 5.2 136 229-364 23-180 (184)
215 2pq6_A UDP-glucuronosyl/UDP-gl 36.6 19 0.00065 36.4 3.1 37 5-46 8-44 (482)
216 3l6u_A ABC-type sugar transpor 36.5 2.4E+02 0.008 25.3 12.1 61 301-363 64-125 (293)
217 3tb6_A Arabinose metabolism tr 36.5 2.2E+02 0.0074 25.6 10.5 106 243-367 29-138 (298)
218 3rqi_A Response regulator prot 36.3 63 0.0022 27.2 6.1 103 260-362 7-123 (184)
219 3to5_A CHEY homolog; alpha(5)b 36.1 1.6E+02 0.0055 23.5 8.2 104 260-363 12-132 (134)
220 1pyo_A Caspase-2; apoptosis, c 35.9 48 0.0016 28.1 5.0 45 1-46 28-79 (167)
221 4ehd_A Caspase-3; caspase, apo 35.7 36 0.0012 31.6 4.6 45 1-46 39-90 (277)
222 2nn3_C Caspase-1; cysteine pro 35.3 36 0.0012 32.2 4.6 45 1-46 55-105 (310)
223 2ixa_A Alpha-N-acetylgalactosa 35.2 1.7E+02 0.0059 28.9 10.0 75 257-332 41-122 (444)
224 3g1w_A Sugar ABC transporter; 34.9 2.2E+02 0.0075 25.8 10.3 62 301-364 61-123 (305)
225 3evn_A Oxidoreductase, GFO/IDH 34.5 1.1E+02 0.0039 28.7 8.2 21 109-129 59-79 (329)
226 1xea_A Oxidoreductase, GFO/IDH 34.4 1E+02 0.0034 28.9 7.8 70 257-332 24-94 (323)
227 2b4a_A BH3024; flavodoxin-like 34.2 1.6E+02 0.0055 22.7 9.4 107 259-365 14-132 (138)
228 1qtn_A Caspase-8; apoptosis, d 34.1 45 0.0015 28.2 4.6 45 1-46 18-76 (164)
229 1zh2_A KDP operon transcriptio 33.8 1.3E+02 0.0044 22.5 7.2 102 262-363 3-117 (121)
230 1dc7_A NTRC, nitrogen regulati 33.8 57 0.002 24.7 5.1 103 262-364 5-121 (124)
231 2qv0_A Protein MRKE; structura 33.8 1.7E+02 0.0057 22.8 9.1 104 260-363 9-126 (143)
232 3ip3_A Oxidoreductase, putativ 33.7 77 0.0026 30.0 6.9 73 258-333 22-99 (337)
233 2czc_A Glyceraldehyde-3-phosph 33.4 1.7E+02 0.0058 27.7 9.2 82 246-332 16-110 (334)
234 3e18_A Oxidoreductase; dehydro 33.2 1.5E+02 0.0053 28.2 9.0 70 257-333 26-97 (359)
235 1f1j_A Caspase-7 protease; cas 33.1 40 0.0014 31.8 4.5 45 1-46 64-115 (305)
236 1gqo_A Dehydroquinase; dehydra 32.9 79 0.0027 25.9 5.6 90 273-362 32-139 (143)
237 1qv9_A F420-dependent methylen 32.5 74 0.0025 28.6 5.6 92 243-347 15-117 (283)
238 3l49_A ABC sugar (ribose) tran 32.3 1.3E+02 0.0043 27.2 8.0 59 301-363 61-120 (291)
239 1djl_A Transhydrogenase DIII; 32.2 58 0.002 28.2 4.8 136 229-364 46-203 (207)
240 3e9m_A Oxidoreductase, GFO/IDH 32.1 2.9E+02 0.0098 25.8 10.7 21 109-129 59-79 (330)
241 4gmf_A Yersiniabactin biosynth 32.0 61 0.0021 31.5 5.8 91 229-333 7-102 (372)
242 3c3m_A Response regulator rece 31.4 1.8E+02 0.0062 22.5 9.4 106 261-366 4-125 (138)
243 1pno_A NAD(P) transhydrogenase 31.4 56 0.0019 27.6 4.5 134 229-362 24-179 (180)
244 3oqb_A Oxidoreductase; structu 30.8 1.4E+02 0.0049 28.7 8.4 59 270-332 54-114 (383)
245 2php_A Uncharacterized protein 30.3 2.6E+02 0.0089 24.2 8.8 97 246-363 78-179 (192)
246 1s8n_A Putative antiterminator 30.1 2.1E+02 0.0072 24.1 8.7 103 261-363 14-130 (205)
247 3cu5_A Two component transcrip 29.9 1.9E+02 0.0064 22.6 7.8 62 302-363 50-122 (141)
248 2oqr_A Sensory transduction pr 29.6 1.3E+02 0.0045 26.0 7.4 104 261-364 5-121 (230)
249 3n7t_A Macrophage binding prot 29.5 74 0.0025 28.8 5.6 38 6-46 10-56 (247)
250 2uyg_A 3-dehydroquinate dehydr 29.2 1.2E+02 0.0042 25.0 6.1 91 273-363 31-140 (149)
251 3iz6_A 40S ribosomal protein S 29.1 81 0.0028 29.4 5.6 98 240-339 55-161 (305)
252 1dcf_A ETR1 protein; beta-alph 29.0 2E+02 0.0067 22.1 10.3 106 260-365 7-130 (136)
253 1uqr_A 3-dehydroquinate dehydr 28.2 76 0.0026 26.4 4.7 89 273-361 33-139 (154)
254 2khz_A C-MYC-responsive protei 28.0 1.2E+02 0.0042 25.4 6.4 66 297-364 73-151 (165)
255 2h54_A Caspase-1; allosteric s 27.7 67 0.0023 27.5 4.7 45 1-46 36-86 (178)
256 8abp_A L-arabinose-binding pro 27.7 2.1E+02 0.0072 25.9 8.7 34 301-334 57-91 (306)
257 2d1p_B TUSC, hypothetical UPF0 27.5 45 0.0015 26.3 3.3 38 7-46 3-40 (119)
258 4b4o_A Epimerase family protei 27.4 48 0.0016 30.6 4.0 19 27-46 14-32 (298)
259 1p2f_A Response regulator; DRR 27.2 1.1E+02 0.0038 26.3 6.3 99 262-364 4-117 (220)
260 2acv_A Triterpene UDP-glucosyl 27.2 48 0.0016 33.3 4.2 36 5-46 9-47 (463)
261 2ql9_A Caspase-7; cysteine pro 27.0 68 0.0023 27.4 4.5 45 1-46 39-90 (173)
262 3q9s_A DNA-binding response re 27.0 1.9E+02 0.0066 25.6 8.1 105 261-365 38-155 (249)
263 3a06_A 1-deoxy-D-xylulose 5-ph 26.8 4E+02 0.014 25.6 10.3 75 259-333 27-117 (376)
264 3pdi_A Nitrogenase MOFE cofact 26.7 3.8E+02 0.013 26.8 10.9 89 261-363 204-300 (483)
265 2r25_B Osmosensing histidine p 26.6 2.2E+02 0.0075 21.9 9.1 104 261-364 3-127 (133)
266 1vl6_A Malate oxidoreductase; 26.4 1.8E+02 0.0061 28.3 7.9 72 257-329 189-290 (388)
267 2nvw_A Galactose/lactose metab 26.0 1.9E+02 0.0064 29.0 8.4 70 259-332 67-145 (479)
268 3vot_A L-amino acid ligase, BL 25.9 55 0.0019 32.2 4.4 36 1-46 1-36 (425)
269 2qip_A Protein of unknown func 25.9 1.4E+02 0.0048 24.9 6.4 65 241-308 91-159 (165)
270 3o74_A Fructose transport syst 25.9 3.4E+02 0.012 23.8 11.3 62 301-365 58-119 (272)
271 2vk2_A YTFQ, ABC transporter p 25.8 3.5E+02 0.012 24.4 10.0 63 301-363 58-122 (306)
272 3gvp_A Adenosylhomocysteinase 25.7 2.4E+02 0.0081 27.9 8.7 43 293-335 267-310 (435)
273 2p2s_A Putative oxidoreductase 25.7 1.1E+02 0.0036 28.9 6.3 69 259-332 27-97 (336)
274 3b2n_A Uncharacterized protein 25.5 2.3E+02 0.0078 21.7 8.1 63 302-364 50-123 (133)
275 3o1i_D Periplasmic protein TOR 25.5 2.5E+02 0.0086 25.3 8.8 64 301-365 63-130 (304)
276 2cok_A Poly [ADP-ribose] polym 25.1 91 0.0031 24.4 4.6 66 259-332 12-78 (113)
277 3u5c_A 40S ribosomal protein S 25.0 60 0.002 29.5 3.9 98 240-339 50-156 (252)
278 2fp3_A Caspase NC; apoptosis, 24.9 79 0.0027 29.9 5.0 44 1-45 55-104 (316)
279 2o4c_A Erythronate-4-phosphate 24.9 2E+02 0.007 27.8 8.1 75 261-335 117-210 (380)
280 1qgu_B Protein (nitrogenase mo 24.9 2.2E+02 0.0076 28.9 8.8 114 240-365 191-335 (519)
281 3qjg_A Epidermin biosynthesis 24.3 1.1E+02 0.0036 26.2 5.2 35 6-46 6-40 (175)
282 1h05_A 3-dehydroquinate dehydr 24.2 3E+02 0.01 22.6 9.1 91 273-363 34-142 (146)
283 3mm4_A Histidine kinase homolo 24.0 2E+02 0.007 24.5 7.4 107 260-366 61-198 (206)
284 1rw7_A YDR533CP; alpha-beta sa 24.0 1E+02 0.0035 27.6 5.5 41 1-46 1-50 (243)
285 4b4t_W RPN10, 26S proteasome r 23.9 3.2E+02 0.011 24.9 8.8 52 229-283 108-162 (268)
286 2zkq_b 40S ribosomal protein S 23.7 88 0.003 29.2 4.9 98 240-339 51-157 (295)
287 3btv_A Galactose/lactose metab 23.7 1.9E+02 0.0066 28.5 7.9 70 259-332 48-126 (438)
288 1b0a_A Protein (fold bifunctio 23.5 3E+02 0.01 25.5 8.5 64 247-310 146-211 (288)
289 2bru_C NAD(P) transhydrogenase 23.5 97 0.0033 26.2 4.5 132 229-360 31-184 (186)
290 3l07_A Bifunctional protein fo 23.4 2.6E+02 0.0088 25.9 8.0 53 258-310 159-213 (285)
291 3p2o_A Bifunctional protein fo 23.2 2.7E+02 0.0091 25.8 8.1 63 248-310 148-212 (285)
292 3h75_A Periplasmic sugar-bindi 23.1 3.1E+02 0.011 25.4 9.2 35 301-335 62-96 (350)
293 3k96_A Glycerol-3-phosphate de 23.0 36 0.0012 32.9 2.2 36 1-46 25-60 (356)
294 1tvm_A PTS system, galactitol- 22.9 1E+02 0.0034 24.0 4.5 80 263-363 25-112 (113)
295 3l4e_A Uncharacterized peptida 22.8 82 0.0028 27.6 4.4 75 260-335 27-123 (206)
296 1y81_A Conserved hypothetical 22.8 97 0.0033 25.1 4.6 37 4-46 13-49 (138)
297 1jg7_A BGT, DNA beta-glucosylt 22.7 3E+02 0.01 24.4 7.7 51 314-366 266-318 (351)
298 2ioy_A Periplasmic sugar-bindi 22.7 4.1E+02 0.014 23.6 9.9 62 301-364 57-119 (283)
299 3h9u_A Adenosylhomocysteinase; 22.7 91 0.0031 30.9 5.1 42 293-334 258-300 (436)
300 2bw0_A 10-FTHFDH, 10-formyltet 22.7 3.5E+02 0.012 25.5 9.2 110 1-150 19-128 (329)
301 1p3y_1 MRSD protein; flavoprot 22.6 95 0.0033 27.0 4.7 36 5-46 8-43 (194)
302 2dc1_A L-aspartate dehydrogena 22.6 1.3E+02 0.0046 26.6 6.0 42 293-334 41-83 (236)
303 2h3h_A Sugar ABC transporter, 22.4 4.3E+02 0.015 23.9 10.3 61 301-363 57-118 (313)
304 2fn9_A Ribose ABC transporter, 22.4 4.1E+02 0.014 23.6 10.4 62 301-364 58-121 (290)
305 3egc_A Putative ribose operon 22.1 3.7E+02 0.013 23.9 9.3 44 320-366 82-125 (291)
306 1a4i_A Methylenetetrahydrofola 22.1 2.8E+02 0.0097 25.8 8.1 54 258-311 163-218 (301)
307 2ki0_A DS119; beta-alpha-beta, 22.0 13 0.00044 21.4 -0.7 30 261-290 5-35 (36)
308 2hqr_A Putative transcriptiona 22.0 1.6E+02 0.0056 25.2 6.4 100 263-365 3-116 (223)
309 4a5o_A Bifunctional protein fo 21.9 3E+02 0.01 25.5 8.1 52 259-310 160-213 (286)
310 3oet_A Erythronate-4-phosphate 21.9 2.5E+02 0.0086 27.2 8.0 76 260-335 119-213 (381)
311 3ngx_A Bifunctional protein fo 21.8 4E+02 0.014 24.4 9.0 63 242-309 137-201 (276)
312 1xdw_A NAD+-dependent (R)-2-hy 21.6 3.6E+02 0.012 25.3 9.1 55 294-360 191-250 (331)
313 4g2n_A D-isomer specific 2-hyd 21.5 2.8E+02 0.0096 26.4 8.3 56 293-360 219-279 (345)
314 3rc1_A Sugar 3-ketoreductase; 21.5 2.6E+02 0.0088 26.4 8.1 21 109-129 81-101 (350)
315 2xzm_B RPS0E; ribosome, transl 21.4 1.4E+02 0.005 26.8 5.7 98 241-339 47-153 (241)
316 2yq5_A D-isomer specific 2-hyd 21.3 3.3E+02 0.011 25.9 8.7 55 294-360 193-252 (343)
317 2fvt_A Conserved hypothetical 21.2 1E+02 0.0034 25.1 4.3 40 251-290 58-101 (135)
318 3q0i_A Methionyl-tRNA formyltr 21.2 2.5E+02 0.0086 26.4 7.7 111 1-150 4-114 (318)
319 3n58_A Adenosylhomocysteinase; 21.1 4.2E+02 0.014 26.4 9.4 43 293-335 294-337 (464)
320 3jtm_A Formate dehydrogenase, 21.1 3.7E+02 0.013 25.6 9.1 56 293-360 212-272 (351)
321 3ksm_A ABC-type sugar transpor 21.1 4.2E+02 0.014 23.2 10.8 60 302-364 60-121 (276)
322 2etx_A Mediator of DNA damage 21.0 1.6E+02 0.0055 25.6 6.0 61 260-333 12-72 (209)
323 3gvx_A Glycerate dehydrogenase 20.6 3E+02 0.01 25.4 8.1 87 262-360 124-225 (290)
324 3sqd_A PAX-interacting protein 20.6 1.4E+02 0.0047 26.4 5.5 63 260-333 16-79 (219)
325 2dri_A D-ribose-binding protei 20.4 4.4E+02 0.015 23.2 9.9 62 301-364 57-119 (271)
326 1lu4_A Soluble secreted antige 20.1 2.9E+02 0.01 21.0 7.5 59 229-288 25-83 (136)
No 1
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=5.4e-38 Score=320.31 Aligned_cols=351 Identities=15% Similarity=0.105 Sum_probs=259.2
Q ss_pred CCccccEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcc
Q 010098 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDR 80 (518)
Q Consensus 1 M~~~~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 80 (518)
|.++ |||+++++.|+|..+|.+.....+++.| .| |+|+|+++.... .....+. ..
T Consensus 1 M~~~-mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g-~~v~v~~~~~~~----------------~~~~~~~-----~~ 55 (394)
T 3okp_A 1 MSAS-RKTLVVTNDFPPRIGGIQSYLRDFIATQ--DP-ESIVVFASTQNA----------------EEAHAYD-----KT 55 (394)
T ss_dssp ---C-CCEEEEESCCTTSCSHHHHHHHHHHTTS--CG-GGEEEEEECSSH----------------HHHHHHH-----TT
T ss_pred CCCC-ceEEEEeCccCCccchHHHHHHHHHHHh--cC-CeEEEEECCCCc----------------cchhhhc-----cc
Confidence 6555 9999999999999999888889999988 45 999999983210 0000000 00
Q ss_pred cCCCCCCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-C-EEEEEeCChhhhhh
Q 010098 81 TGFTSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-F-VVGIVHTNYLEYVK 158 (518)
Q Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~-~v~~~h~~~~~~~~ 158 (518)
.. +.+...+.. ...........+.+++++.+||+||++......++ ..+.++.+ | +|.++|+....+..
T Consensus 56 ~~----~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~Dvv~~~~~~~~~~~---~~~~~~~~~~~~i~~~h~~~~~~~~ 126 (394)
T 3okp_A 56 LD----YEVIRWPRS--VMLPTPTTAHAMAEIIREREIDNVWFGAAAPLALM---AGTAKQAGASKVIASTHGHEVGWSM 126 (394)
T ss_dssp CS----SEEEEESSS--SCCSCHHHHHHHHHHHHHTTCSEEEESSCTTGGGG---HHHHHHTTCSEEEEECCSTHHHHTT
T ss_pred cc----eEEEEcccc--ccccchhhHHHHHHHHHhcCCCEEEECCcchHHHH---HHHHHhcCCCcEEEEeccchhhhhh
Confidence 00 111100110 00111122456788888999999999987766444 33445444 5 78899966443221
Q ss_pred hhcchHHHHHHHHHHHHHHhhhhccEEEEeChhhhcc-------CCCceecccccCCCCcCc-c--hhhHHHhhcCCCCc
Q 010098 159 REKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEY-------PNSIVCNVHGVNPKFLEI-G--EKKMEQQQNGNKAF 228 (518)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~-------~~~~~~~~~GVd~~~~~~-~--~~~~~~~~~~~~~~ 228 (518)
. ...+.+.+++.+. ||.++++|+..++. ..+..+..+|+|.+.+.+ . .....+...+.+++
T Consensus 127 ~--------~~~~~~~~~~~~~-~d~ii~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (394)
T 3okp_A 127 L--------PGSRQSLRKIGTE-VDVLTYISQYTLRRFKSAFGSHPTFEHLPSGVDVKRFTPATPEDKSATRKKLGFTDT 197 (394)
T ss_dssp S--------HHHHHHHHHHHHH-CSEEEESCHHHHHHHHHHHCSSSEEEECCCCBCTTTSCCCCHHHHHHHHHHTTCCTT
T ss_pred c--------chhhHHHHHHHHh-CCEEEEcCHHHHHHHHHhcCCCCCeEEecCCcCHHHcCCCCchhhHHHHHhcCCCcC
Confidence 1 1222223333333 79999999887763 123345567999987765 2 22334556677777
Q ss_pred ccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCC--CChHHHHhhcCeeE
Q 010098 229 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGR--DHADPIFHDYKVFL 306 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~--~~~~~l~~~adv~v 306 (518)
.+.++|+|++.+.||++.+++++.++.++.++++|+++|+|+..+.+++++..+.-.+.+.|.. +++.++|+.||++|
T Consensus 198 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v 277 (394)
T 3okp_A 198 TPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFA 277 (394)
T ss_dssp CCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEEECCCTTHHHHHHHTGGGGGGEEEEESCCHHHHHHHHHHCSEEE
T ss_pred ceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEcCchHHHHHHHHHhcccCeEEEcCCCCHHHHHHHHHhCCEEE
Confidence 7999999999999999999999999999999999999999999999999885554568888876 57779999999999
Q ss_pred ecCCC-------CCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC--CCChHHH
Q 010098 307 NPSTT-------DVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT 374 (518)
Q Consensus 307 ~pS~~-------E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~--~l~~~~~ 374 (518)
+||.. |+||++++|||+||+|||+++.++ .|++.++ +|++++ |+++++++|.++++|++. +++++++
T Consensus 278 ~ps~~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~ 356 (394)
T 3okp_A 278 MPARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSELLIELLDDPIRRAAMGAAGR 356 (394)
T ss_dssp ECCCCBGGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEECCTTCHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ecCccccccccccccCcHHHHHHHcCCCEEEeCCCChHHHHhcC-CceEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 99998 999999999999999999999998 9999998 999986 999999999999998876 7777766
Q ss_pred ----hcCCHHHHHHHHHHHHHhcCC
Q 010098 375 ----HQLSWESATERFLQVAELVGD 395 (518)
Q Consensus 375 ----~~~sw~~~~~~~~~~y~~~~~ 395 (518)
++|||+.+++++.++|+...+
T Consensus 357 ~~~~~~~s~~~~~~~~~~~~~~~~r 381 (394)
T 3okp_A 357 AHVEAEWSWEIMGERLTNILQSEPR 381 (394)
T ss_dssp HHHHHHTBHHHHHHHHHHHHHSCCC
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 679999999999999997653
No 2
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=4.4e-38 Score=325.53 Aligned_cols=368 Identities=16% Similarity=0.161 Sum_probs=252.4
Q ss_pred cccEEEEEeeccCC-cccccccchHHHHHHHHhcCCeeEEEEeccCCccccccc-----------------CCCCcccCC
Q 010098 4 KQQHIAIFTTASLP-WLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQV-----------------YPGNITFAS 65 (518)
Q Consensus 4 ~~~rI~ivt~~~~P-~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~-----------------~p~~~~~~~ 65 (518)
++|||++++..++| ..+|.+.....++++|++.| |+|+|+++.......... ..+++.+..
T Consensus 1 r~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G-~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~ 79 (439)
T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAEALTAISEALASLG-HEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYR 79 (439)
T ss_dssp CCCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTT-CEEEEEEECTTCSCCEEEEEEEETTEEEEEEEEEEEETTEEEEE
T ss_pred CceEEEEEecccCCcccCCHHHHHHHHHHHHHHCC-CeEEEEecCCCCchhhhhccccccCcccceeeeeccCCCceEEE
Confidence 46999999998888 77888888999999999998 999999984422111100 000111000
Q ss_pred hhHHHHHHHHhhhcccCCCCCCcccccCcccccc-c-ccccc---h-hhHHhhc-CCCCCcEEEEcCCchhhhhhchHHH
Q 010098 66 PKEQEAYVRWWLEDRTGFTSTFDTRFYPGKFAAD-K-KSILA---V-GDITEII-PDEEADIAVLEEPEHLTWFHHGKRW 138 (518)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~-~~i~~---~-~~l~~~i-~~~~~Dvi~~~~~~~~~~~~~~~~~ 138 (518)
... .... +...|.. +... . +.... . ..+.+.+ +..+||+||+|++... +. +..+
T Consensus 80 ~~~-------------~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~-~~--~~~~ 140 (439)
T 3fro_A 80 IGG-------------GLLD--SEDVYGP-GWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTV-FA--GALI 140 (439)
T ss_dssp EES-------------GGGG--CSSTTCS-HHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGGH-HH--HHHH
T ss_pred ecc-------------hhcc--ccccccC-CcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchhhh-hh--HHHH
Confidence 000 0000 0000000 0000 0 00000 1 1122222 3678999999986543 22 2334
Q ss_pred HhhcC-CEEEEEeCChhhhhhh-----hcchHHHHHHHHHHHHHHhhhhccEEEEeChhhhcc--------CCCceeccc
Q 010098 139 KAKFR-FVVGIVHTNYLEYVKR-----EKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEY--------PNSIVCNVH 204 (518)
Q Consensus 139 ~~~~~-~~v~~~h~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~--------~~~~~~~~~ 204 (518)
++..+ |+|.++|+.+...... .............+.+...+ .||.++++|+..++. ..+..+.++
T Consensus 141 ~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ad~ii~~S~~~~~~~~~~~~~~~~~i~vi~n 219 (439)
T 3fro_A 141 KKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSELAPYPDIDPEHTGGY-IADIVTTVSRGYLIDEWGFFRNFEGKITYVFN 219 (439)
T ss_dssp HHHHCCCEEEEESCCCCCCEEHHHHHHTTCGGGCCSSEECHHHHHHH-HCSEEEESCHHHHHHTHHHHGGGTTSEEECCC
T ss_pred hhccCCCEEEEecccccccCchHHhCccccccccccceeeHhhhhhh-hccEEEecCHHHHHHHhhhhhhcCCceeecCC
Confidence 44444 9999999774321100 00000000000012222333 379999999876652 234455668
Q ss_pred ccCCCCcCcc--------hhhHHHhhcCCCCcccEEEEEEeec-ccCCHHHHHHHHHHHHHhc--CCcEEEEEeCCCCh-
Q 010098 205 GVNPKFLEIG--------EKKMEQQQNGNKAFTKGAYYIGRMV-WSKGYEELLGLLNIYHKEL--AGLEMDLYGNGEDF- 272 (518)
Q Consensus 205 GVd~~~~~~~--------~~~~~~~~~~~~~~~~~il~vGr~~-~~Kg~~~ll~a~~~l~~~~--~~~~l~ivG~g~~~- 272 (518)
|+|.+.|.+. .....+...+.+++ +.++|+|++. +.||++.+++|+.++.++. ++++|+++|+|+..
T Consensus 220 gvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~ 298 (439)
T 3fro_A 220 GIDCSFWNESYLTGSRDERKKSLLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPEL 298 (439)
T ss_dssp CCCTTTSCGGGSCSCHHHHHHHHHHHHTCCSC-EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCHHH
T ss_pred CCCchhcCcccccchhhhhHHHHHHHcCCCCC-cEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCChhH
Confidence 9999888765 23334455676666 9999999999 9999999999999998876 89999999999877
Q ss_pred -HHHHHHHHHcCCeEEEeCC-C--CChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEe
Q 010098 273 -DQIQRAAKKLKLVVRVYPG-R--DHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRT 347 (518)
Q Consensus 273 -~~l~~~~~~~~l~v~~~~~-~--~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~ 347 (518)
+.+++++++++ ++.++.+ . +++.++|+.||++|+||..|+||++++||||||+|||+|+.|+ .|++.++ +|++
T Consensus 299 ~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~ 376 (439)
T 3fro_A 299 EGWARSLEEKHG-NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGIL 376 (439)
T ss_dssp HHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTTCSEEEECBSCCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEE
T ss_pred HHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHHHCCEEEeCCCCCCccHHHHHHHHCCCCeEEcCCCCcceeEEcC-ceEE
Confidence 89999999999 6554443 3 3456999999999999999999999999999999999999998 8999887 8888
Q ss_pred eC--CHHHHHHHHHHHHh-CCCC--CCChHHH---hcCCHHHHHHHHHHHHHhcCC
Q 010098 348 YD--GRNGFVEATLKALA-EEPA--QPTDAQT---HQLSWESATERFLQVAELVGD 395 (518)
Q Consensus 348 ~~--d~~~l~~~i~~ll~-~~~~--~l~~~~~---~~~sw~~~~~~~~~~y~~~~~ 395 (518)
++ |+++++++|.++++ +++. +++++++ ++|||+.+++++.++|+....
T Consensus 377 ~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 432 (439)
T 3fro_A 377 VKAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFSWEKSAERYVKAYTGSID 432 (439)
T ss_dssp ECTTCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHTCSC
T ss_pred eCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHH
Confidence 75 99999999999999 7776 7777777 689999999999999997653
No 3
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=7e-37 Score=317.08 Aligned_cols=365 Identities=14% Similarity=0.114 Sum_probs=247.4
Q ss_pred ccEEEEEeeccCC-------cccccccchHHHHHHHHhcCCeeEEEEeccCCcccccc-cCCCCcccCChhHHHHHHHHh
Q 010098 5 QQHIAIFTTASLP-------WLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQ-VYPGNITFASPKEQEAYVRWW 76 (518)
Q Consensus 5 ~~rI~ivt~~~~P-------~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~ 76 (518)
.|||++++..|+| ..+|.+.....++++|.+.| |+|+|+++......... ...+++.+.
T Consensus 20 mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G-~~V~v~~~~~~~~~~~~~~~~~~v~v~------------ 86 (438)
T 3c48_A 20 HMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQG-IEVDIYTRATRPSQGEIVRVAENLRVI------------ 86 (438)
T ss_dssp CCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTT-CEEEEEEECCCGGGCSEEEEETTEEEE------------
T ss_pred hheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcC-CEEEEEecCCCCCCcccccccCCeEEE------------
Confidence 4899999999988 45787788899999999998 99999988321100000 000111000
Q ss_pred hhcccCCCCCCcccccCcccccccccccc-hhhHHhh-cCCC-CCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCC
Q 010098 77 LEDRTGFTSTFDTRFYPGKFAADKKSILA-VGDITEI-IPDE-EADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTN 152 (518)
Q Consensus 77 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~-~~~l~~~-i~~~-~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~ 152 (518)
++...+ ....+.. .....+.. ...+.+. +++. +||+||+|..... ++ +..+++..+ |+|.++|+.
T Consensus 87 ---~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~-~~--~~~~~~~~~~p~v~~~h~~ 155 (438)
T 3c48_A 87 ---NIAAGP---YEGLSKE--ELPTQLAAFTGGMLSFTRREKVTYDLIHSHYWLSG-QV--GWLLRDLWRIPLIHTAHTL 155 (438)
T ss_dssp ---EECCSC---SSSCCGG--GGGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHH-HH--HHHHHHHHTCCEEEECSSC
T ss_pred ---EecCCC---ccccchh--HHHHHHHHHHHHHHHHHHhccCCCCEEEeCCccHH-HH--HHHHHHHcCCCEEEEecCC
Confidence 001000 0000000 00000000 1112222 3333 4999999975332 22 233444445 899999977
Q ss_pred hhhhhhhhcch-HHHHHHHHHHHHHHhhhhccEEEEeChhhhccC--------CCceecccccCCCCcCcchhhH---HH
Q 010098 153 YLEYVKREKND-RLQAFLLEFVNSWLARVHCHKVIRLSAATQEYP--------NSIVCNVHGVNPKFLEIGEKKM---EQ 220 (518)
Q Consensus 153 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~--------~~~~~~~~GVd~~~~~~~~~~~---~~ 220 (518)
........... .........+.+++.+. ||.++++|+..++.. .+..+..+|+|.+.|.+..... .+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~ii~~s~~~~~~~~~~~g~~~~k~~vi~ngvd~~~~~~~~~~~~~~~r 234 (438)
T 3c48_A 156 AAVKNSYRDDSDTPESEARRICEQQLVDN-ADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPGNDRATERSR 234 (438)
T ss_dssp HHHHSCC----CCHHHHHHHHHHHHHHHH-CSEEEESSHHHHHHHHHHHCCCGGGEEECCCCCCTTTSCCC----CHHHH
T ss_pred cccccccccccCCcchHHHHHHHHHHHhc-CCEEEEcCHHHHHHHHHHhCCChhheEEecCCccccccCCcccchhhhhH
Confidence 54321111000 01111222233333343 899999998776631 2234555799988776654332 45
Q ss_pred hhcCCCCcccEEEEEEeecccCCHHHHHHHHHHHHHhcC--CcEEEEEeC----CCChHHHHHHHHHcCCe--EEEeCCC
Q 010098 221 QQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELA--GLEMDLYGN----GEDFDQIQRAAKKLKLV--VRVYPGR 292 (518)
Q Consensus 221 ~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~--~~~l~ivG~----g~~~~~l~~~~~~~~l~--v~~~~~~ 292 (518)
...+.+.+.++++|+|++.+.||++.+++|+..+.++.| +++|+++|+ |+..+.++++++++++. +.+.|..
T Consensus 235 ~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~ 314 (438)
T 3c48_A 235 RELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPR 314 (438)
T ss_dssp HHTTCCSSSEEEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCC
T ss_pred HhcCCCCCCcEEEEEeeecccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCC
Confidence 566666678899999999999999999999999998877 799999999 77888999999998864 7788876
Q ss_pred --CChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC
Q 010098 293 --DHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA 367 (518)
Q Consensus 293 --~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~ 367 (518)
+++.++|+.||++|+||..|+||++++||||||+|||+++.++ .|++.++.+|++++ |+++++++|.++++|++.
T Consensus 315 ~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~~ 394 (438)
T 3c48_A 315 PPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLDDDET 394 (438)
T ss_dssp CHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEESSCCHHHHHHHHHHHHHCHHH
T ss_pred ChHHHHHHHHhCCEEEECccccCCchHHHHHHHcCCCEEecCCCChhHHhhCCCcEEECCCCCHHHHHHHHHHHHcCHHH
Confidence 4667999999999999999999999999999999999999998 99999999999985 999999999999998875
Q ss_pred --CCChHHH---hcCCHHHHHHHHHHHHHhcC
Q 010098 368 --QPTDAQT---HQLSWESATERFLQVAELVG 394 (518)
Q Consensus 368 --~l~~~~~---~~~sw~~~~~~~~~~y~~~~ 394 (518)
+|+++++ ++|||+.+++++.++|+...
T Consensus 395 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 426 (438)
T 3c48_A 395 RIRMGEDAVEHARTFSWAATAAQLSSLYNDAI 426 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 7777777 44999999999999999665
No 4
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=2.1e-36 Score=311.51 Aligned_cols=348 Identities=14% Similarity=0.077 Sum_probs=248.6
Q ss_pred cccEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCC
Q 010098 4 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGF 83 (518)
Q Consensus 4 ~~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (518)
++|||+++++. +..+|.+.....++++|.+.| |+|++++.... .. .+ ... ..+...+.. .
T Consensus 39 ~~mkIl~v~~~--~~~GG~~~~~~~l~~~L~~~G-~~v~v~~~~~~--~~--~~---------~~~-~~~~~~~~~-~-- 98 (416)
T 2x6q_A 39 KGRSFVHVNST--SFGGGVAEILHSLVPLLRSIG-IEARWFVIEGP--TE--FF---------NVT-KTFHNALQG-N-- 98 (416)
T ss_dssp TTCEEEEEESC--SSSSTHHHHHHHHHHHHHHTT-CEEEEEECCCC--HH--HH---------HHH-HHHHHHHTT-C--
T ss_pred hccEEEEEeCC--CCCCCHHHHHHHHHHHHHhCC-CeEEEEEccCC--cc--hh---------hhh-cccceeecc-c--
Confidence 45899999986 456787778888999999998 99999987210 00 00 000 111111100 0
Q ss_pred CCCCcccccCccccccccccc-chhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcCCEEEEEeCChhhhhhhhcc
Q 010098 84 TSTFDTRFYPGKFAADKKSIL-AVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKN 162 (518)
Q Consensus 84 ~~~~~i~~~~~~~~~~~~~i~-~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~ 162 (518)
..+.+.. . ...... ....+.+.+++.+||+||+|++....+. . +.++..|+|.+.|+.+....
T Consensus 99 -~~~~~~~--~----~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~---~-~~~~~~p~v~~~h~~~~~~~----- 162 (416)
T 2x6q_A 99 -ESLKLTE--E----MKELYLNVNRENSKFIDLSSFDYVLVHDPQPAALI---E-FYEKKSPWLWRCHIDLSSPN----- 162 (416)
T ss_dssp -CSCCCCH--H----HHHHHHHHHHHHHHSSCGGGSSEEEEESSTTGGGG---G-GSCCCSCEEEECCSCCSSCC-----
T ss_pred -ccccccH--H----HHHHHHHHHHHHHHHHhhcCCCEEEEeccchhhHH---H-HHHhcCCEEEEEccccCCcc-----
Confidence 0011110 0 000100 1233566788889999999997665322 1 22222689999997653311
Q ss_pred hHHHHHHHHHHHHHHhhhhccEEE-EeChhhhc-cC-CCceecccccCCCCcCcc-----hhhHHHhhcCCCCcccEEEE
Q 010098 163 DRLQAFLLEFVNSWLARVHCHKVI-RLSAATQE-YP-NSIVCNVHGVNPKFLEIG-----EKKMEQQQNGNKAFTKGAYY 234 (518)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~ad~vi-~~S~~~~~-~~-~~~~~~~~GVd~~~~~~~-----~~~~~~~~~~~~~~~~~il~ 234 (518)
....+.+.+.+.+ +|.++ ++|+..++ +. .+..+.++|+|+..+.+. .....+...+.+++.++++|
T Consensus 163 ----~~~~~~~~~~~~~--~~~~i~~~s~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~ 236 (416)
T 2x6q_A 163 ----REFWEFLRRFVEK--YDRYIFHLPEYVQPELDRNKAVIMPPSIDPLSEKNVELKQTEILRILERFDVDPEKPIITQ 236 (416)
T ss_dssp ----HHHHHHHHHHHTT--SSEEEESSGGGSCTTSCTTTEEECCCCBCTTSTTTSCCCHHHHHHHHHHTTCCTTSCEEEE
T ss_pred ----HHHHHHHHHHHHh--CCEEEEechHHHHhhCCccceEEeCCCCChhhhcccccChhhHHHHHHHhCCCCCCcEEEE
Confidence 1122333444444 47666 56666666 33 344556679998655321 12233455666677889999
Q ss_pred EEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-----hHHHHHHHHHcCC--eEEEeCCCC-----ChHHHHhhc
Q 010098 235 IGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED-----FDQIQRAAKKLKL--VVRVYPGRD-----HADPIFHDY 302 (518)
Q Consensus 235 vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-----~~~l~~~~~~~~l--~v~~~~~~~-----~~~~l~~~a 302 (518)
+||+.+.||++.+++|+..+.++.|+++|+++|+|++ .+.++++++++++ .+.+.|... ++.++|+.|
T Consensus 237 vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~a 316 (416)
T 2x6q_A 237 VSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRAS 316 (416)
T ss_dssp ECCCCTTSCHHHHHHHHHHHHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHC
T ss_pred EeccccccCHHHHHHHHHHHHHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhC
Confidence 9999999999999999999999889999999999975 4667888888876 477877433 567999999
Q ss_pred CeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeCCHHHHHHHHHHHHhCCCC--CCChHHH----h
Q 010098 303 KVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQT----H 375 (518)
Q Consensus 303 dv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~~~--~l~~~~~----~ 375 (518)
|++|+||..|+||++++||||||+|||+++.|+ .|++.++.+|++++|+++++++|.++++|++. +++++++ +
T Consensus 317 d~~v~ps~~E~~~~~~lEAma~G~PvI~~~~~g~~e~i~~~~~g~l~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~ 396 (416)
T 2x6q_A 317 DVILQMSIREGFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVRDANEAVEVVLYLLKHPEVSKEMGAKAKERVRK 396 (416)
T ss_dssp SEEEECCSSCSSCHHHHHHHHTTCCEEEESCHHHHHHCCBTTTEEEESSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCcCCCccHHHHHHHcCCCEEEccCCCChhheecCCCeEEECCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988 99999999999999999999999999998876 7777776 5
Q ss_pred cCCHHHHHHHHHHHHHhc
Q 010098 376 QLSWESATERFLQVAELV 393 (518)
Q Consensus 376 ~~sw~~~~~~~~~~y~~~ 393 (518)
+|||+.+++++.++|+..
T Consensus 397 ~fs~~~~~~~~~~~~~~l 414 (416)
T 2x6q_A 397 NFIITKHMERYLDILNSL 414 (416)
T ss_dssp HTBHHHHHHHHHHHHHTC
T ss_pred HcCHHHHHHHHHHHHHHh
Confidence 899999999999999854
No 5
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=1.9e-36 Score=309.54 Aligned_cols=351 Identities=14% Similarity=0.111 Sum_probs=249.6
Q ss_pred cEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCC
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTS 85 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (518)
|+.-+.+..| |..+|++.....+++.|.+.| |+|+++++.... ......+++.+.. +..
T Consensus 14 ~~~~~~~~~~-p~~GG~~~~~~~la~~L~~~G-~~V~v~~~~~~~--~~~~~~~~i~~~~---------------~~~-- 72 (394)
T 2jjm_A 14 MKLKIGITCY-PSVGGSGVVGTELGKQLAERG-HEIHFITSGLPF--RLNKVYPNIYFHE---------------VTV-- 72 (394)
T ss_dssp -CCEEEEECC-C--CHHHHHHHHHHHHHHHTT-CEEEEECSSCC------CCCTTEEEEC---------------CCC--
T ss_pred heeeeehhcC-CCCCCHHHHHHHHHHHHHhCC-CEEEEEeCCCCC--cccccCCceEEEe---------------ccc--
Confidence 3444555555 778898999999999999998 999999883210 0000001111100 000
Q ss_pred CCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhc----CCEEEEEeCChhhhhhhhc
Q 010098 86 TFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKF----RFVVGIVHTNYLEYVKREK 161 (518)
Q Consensus 86 ~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~----~~~v~~~h~~~~~~~~~~~ 161 (518)
....... ...........+.+++++.+||+||+|......+. ..+.++. .|+|.++|+........
T Consensus 73 -~~~~~~~----~~~~~~~~~~~l~~~l~~~~~Dvv~~~~~~~~~~~---~~~~~~~~~~~~p~v~~~h~~~~~~~~~-- 142 (394)
T 2jjm_A 73 -NQYSVFQ----YPPYDLALASKMAEVAQRENLDILHVHYAIPHAIC---AYLAKQMIGERIKIVTTLHGTDITVLGS-- 142 (394)
T ss_dssp -C----CC----SCCHHHHHHHHHHHHHHHHTCSEEEECSSTTHHHH---HHHHHHHTTTCSEEEEECCHHHHHTTTT--
T ss_pred -ccccccc----cccccHHHHHHHHHHHHHcCCCEEEEcchhHHHHH---HHHHHHhhcCCCCEEEEEecCcccccCC--
Confidence 0000000 00001111344677788889999999976544222 1222221 38899999643221111
Q ss_pred chHHHHHHHHHHHHHHhhhhccEEEEeChhhhcc-------CCCceecccccCCCCcCcchhhHHHhhcCCCCcccEEEE
Q 010098 162 NDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEY-------PNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYY 234 (518)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~-------~~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~ 234 (518)
.. ....+.++..+. ||.++++|+..++. ..+..+..+|+|.+.+.+......+...+.+++.+.++|
T Consensus 143 ~~-----~~~~~~~~~~~~-ad~ii~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 216 (394)
T 2jjm_A 143 DP-----SLNNLIRFGIEQ-SDVVTAVSHSLINETHELVKPNKDIQTVYNFIDERVYFKRDMTQLKKEYGISESEKILIH 216 (394)
T ss_dssp CT-----TTHHHHHHHHHH-SSEEEESCHHHHHHHHHHTCCSSCEEECCCCCCTTTCCCCCCHHHHHHTTCC---CEEEE
T ss_pred CH-----HHHHHHHHHHhh-CCEEEECCHHHHHHHHHhhCCcccEEEecCCccHHhcCCcchHHHHHHcCCCCCCeEEEE
Confidence 00 111122233333 79999999887763 134455567999988876555455556666566789999
Q ss_pred EEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCe--EEEeCCCCChHHHHhhcCeeEecCCCC
Q 010098 235 IGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRDHADPIFHDYKVFLNPSTTD 312 (518)
Q Consensus 235 vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~--v~~~~~~~~~~~l~~~adv~v~pS~~E 312 (518)
+|++.+.||++.+++|+.++.++ ++++|+++|+|++.++++++++++++. +.+.|..+++.++|+.||++|+||..|
T Consensus 217 ~G~~~~~Kg~~~li~a~~~l~~~-~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~e 295 (394)
T 2jjm_A 217 ISNFRKVKRVQDVVQAFAKIVTE-VDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSEKE 295 (394)
T ss_dssp ECCCCGGGTHHHHHHHHHHHHHS-SCCEEEEECCCTTHHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHTCSEEEECCSCC
T ss_pred eeccccccCHHHHHHHHHHHHhh-CCCEEEEECCchHHHHHHHHHHHcCCCCeEEEeCchhhHHHHHHhCCEEEeccccC
Confidence 99999999999999999999876 579999999999999999999998874 677888889999999999999999999
Q ss_pred CCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC--CCChHHH----hcCCHHHHH
Q 010098 313 VVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT----HQLSWESAT 383 (518)
Q Consensus 313 ~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~--~l~~~~~----~~~sw~~~~ 383 (518)
+||++++||||||+|||+++.++ .|++.++.+|++++ |+++++++|.++++|++. +|+++++ ++|||+.++
T Consensus 296 ~~~~~~~EAma~G~PvI~~~~~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 375 (394)
T 2jjm_A 296 SFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIV 375 (394)
T ss_dssp SCCHHHHHHHHTTCCEEEECCTTSTTTCCBTTTEEEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCchHHHHHHhcCCCEEEecCCChHHHhhcCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999998 99999999999986 999999999999998875 7777766 789999999
Q ss_pred HHHHHHHHhcC
Q 010098 384 ERFLQVAELVG 394 (518)
Q Consensus 384 ~~~~~~y~~~~ 394 (518)
+++.++|+...
T Consensus 376 ~~~~~~~~~~~ 386 (394)
T 2jjm_A 376 SQYETIYYDVL 386 (394)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHH
Confidence 99999999765
No 6
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=1.5e-36 Score=320.24 Aligned_cols=371 Identities=13% Similarity=0.072 Sum_probs=251.4
Q ss_pred CCccccEEEEEeeccCCc-----------ccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccC--Chh
Q 010098 1 MDRKQQHIAIFTTASLPW-----------LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFA--SPK 67 (518)
Q Consensus 1 M~~~~~rI~ivt~~~~P~-----------~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~--~~~ 67 (518)
|+++ |||++++..++|. .+|++.....++++|.+.| |+|+|+++...... ...|....... ...
T Consensus 4 m~~~-MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G-~~V~v~~~~~~~~~-~~~~~~~~~~~~~~~g 80 (499)
T 2r60_A 4 MTRI-KHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMG-VQVDIITRRIKDEN-WPEFSGEIDYYQETNK 80 (499)
T ss_dssp ---C-CEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTT-CEEEEEEECCCBTT-BGGGCCSEEECTTCSS
T ss_pred cccc-ceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcC-CeEEEEeCCCCccc-ccchhhhHHhccCCCC
Confidence 3443 9999999988773 5787788899999999998 99999987321100 00010000000 000
Q ss_pred HHHHHHHHhhhcccCCCCCCcccccCccccccccccc----chhhHHhhcCC--CCCcEEEEcCCchhhhhhchHHHHhh
Q 010098 68 EQEAYVRWWLEDRTGFTSTFDTRFYPGKFAADKKSIL----AVGDITEIIPD--EEADIAVLEEPEHLTWFHHGKRWKAK 141 (518)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~----~~~~l~~~i~~--~~~Dvi~~~~~~~~~~~~~~~~~~~~ 141 (518)
.++. +++..+..+........ ....+.+++++ .+||+||+|..... ++ +..+++.
T Consensus 81 -----------v~v~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Divh~~~~~~~-~~--~~~~~~~ 141 (499)
T 2r60_A 81 -----------VRIV-----RIPFGGDKFLPKEELWPYLHEYVNKIINFYREEGKFPQVVTTHYGDGG-LA--GVLLKNI 141 (499)
T ss_dssp -----------EEEE-----EECCSCSSCCCGGGCGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHH-HH--HHHHHHH
T ss_pred -----------eEEE-----EecCCCcCCcCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcch-HH--HHHHHHh
Confidence 0000 01110100000000000 02345566665 58999999985432 33 3334444
Q ss_pred cC-CEEEEEeCChhhhhhhhcc-----hHHHHH----HHHHHHHHHhhhhccEEEEeChhhhccCC--------------
Q 010098 142 FR-FVVGIVHTNYLEYVKREKN-----DRLQAF----LLEFVNSWLARVHCHKVIRLSAATQEYPN-------------- 197 (518)
Q Consensus 142 ~~-~~v~~~h~~~~~~~~~~~~-----~~~~~~----~~~~~~~~~~~~~ad~vi~~S~~~~~~~~-------------- 197 (518)
.+ |+|.++|+........... ..+... ....+.+...+ .||.++++|+..++...
T Consensus 142 ~~~p~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ad~vi~~S~~~~~~~~~~~~~g~~~~~~~~ 220 (499)
T 2r60_A 142 KGLPFTFTGHSLGAQKMEKLNVNTSNFKEMDERFKFHRRIIAERLTMS-YADKIIVSTSQERFGQYSHDLYRGAVNVEDD 220 (499)
T ss_dssp HCCCEEEECSSCHHHHHHTTCCCSTTSHHHHHHHCHHHHHHHHHHHHH-HCSEEEESSHHHHHHTTTSGGGTTTCCTTCG
T ss_pred cCCcEEEEccCcccccchhhccCCCCcchhhhhHHHHHHHHHHHHHHh-cCCEEEECCHHHHHHHHhhhcccccccccCC
Confidence 45 8999999775443221110 001111 11122233333 38999999987766321
Q ss_pred -CceecccccCCCCcCcchh----hHHHhhcC-----CCCcccEEEEEEeecccCCHHHHHHHHHHHHHhcCC-cEEEEE
Q 010098 198 -SIVCNVHGVNPKFLEIGEK----KMEQQQNG-----NKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAG-LEMDLY 266 (518)
Q Consensus 198 -~~~~~~~GVd~~~~~~~~~----~~~~~~~~-----~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~-~~l~iv 266 (518)
+..+..+|+|.+.|.+... ...+...+ .+.+.++|+|+|++.+.||++.+++|+.++.++.++ ++|+|+
T Consensus 221 ~ki~vi~ngvd~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~ 300 (499)
T 2r60_A 221 DKFSVIPPGVNTRVFDGEYGDKIKAKITKYLERDLGSERMELPAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTL 300 (499)
T ss_dssp GGEEECCCCBCTTTSSSCCCHHHHHHHHHHHHHHSCGGGTTSCEEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEE
T ss_pred CCeEEECCCcChhhcCccchhhhHHHHHHHhcccccccCCCCcEEEEeecCccccCHHHHHHHHHHHHHhCCCceEEEEE
Confidence 2234457999987766432 23333444 445578999999999999999999999999876554 589999
Q ss_pred eC--CC----------C---hHHHHHHHHHcCCe--EEEeCCC--CChHHHHhhc----CeeEecCCCCCCchHHHHHHH
Q 010098 267 GN--GE----------D---FDQIQRAAKKLKLV--VRVYPGR--DHADPIFHDY----KVFLNPSTTDVVCTATAEALA 323 (518)
Q Consensus 267 G~--g~----------~---~~~l~~~~~~~~l~--v~~~~~~--~~~~~l~~~a----dv~v~pS~~E~~~~~~lEAma 323 (518)
|+ |+ + .++++++++++++. +.++|.. +++.++|+.| |++|+||..|+||++++||||
T Consensus 301 G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma 380 (499)
T 2r60_A 301 RGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMA 380 (499)
T ss_dssp SSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHH
T ss_pred CCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHH
Confidence 98 33 1 67899999999875 7788865 5677999999 999999999999999999999
Q ss_pred cCCeEEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC--CCChHHH----hcCCHHHHHHHHHHHHHhcC
Q 010098 324 MGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT----HQLSWESATERFLQVAELVG 394 (518)
Q Consensus 324 ~G~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~--~l~~~~~----~~~sw~~~~~~~~~~y~~~~ 394 (518)
||+|||+|+.|+ .|++.++.+|++++ |+++++++|.++++|++. +++++++ ++|||+.+++++.++|+...
T Consensus 381 ~G~PvI~s~~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~ 460 (499)
T 2r60_A 381 SGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQETARGYLEVIQEIA 460 (499)
T ss_dssp TTCCEEEESSBHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEecCCCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999999999988 99999999999985 999999999999998875 7777776 56999999999999999655
No 7
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=1.5e-35 Score=311.35 Aligned_cols=371 Identities=14% Similarity=0.053 Sum_probs=245.5
Q ss_pred cEEEEEeeccCCc--ccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCC----------------------CCc
Q 010098 6 QHIAIFTTASLPW--LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYP----------------------GNI 61 (518)
Q Consensus 6 ~rI~ivt~~~~P~--~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p----------------------~~~ 61 (518)
|||+++++.++|. .+|.+.....++++|.++| |+|+|+++....... .++ +++
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G-~~V~vi~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~gv 77 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADG-VDARVLLPAFPDIRR--GVTDAQVVSRRDTFAGHITLLFGHYNGV 77 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTT-CEEEEEEECCHHHHH--HCTTCEEEEEECCTTCCEEEEEEEETTE
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHHcC-CEEEEEecCcccccc--ccccceeEEEecccCCcEEEEEEEECCc
Confidence 7999999988885 6888888899999999998 999999984311000 000 000
Q ss_pred ccCChhHHHHHHHHhhhcccC-CCCCCcccccCcccccccccccchhhHHhhcC----CCCCcEEEEcCCchhhhhhchH
Q 010098 62 TFASPKEQEAYVRWWLEDRTG-FTSTFDTRFYPGKFAADKKSILAVGDITEIIP----DEEADIAVLEEPEHLTWFHHGK 136 (518)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~i~~~~~l~~~i~----~~~~Dvi~~~~~~~~~~~~~~~ 136 (518)
.+...... .+ + .+.. .........|+.. ..+.......+.++++ +.+||+||+|+.... ++ +.
T Consensus 78 ~v~~~~~~-~~---~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~-~~--~~ 145 (485)
T 2qzs_A 78 GIYLIDAP-HL---Y--DRPGSPYHDTNLFAYTDN---VLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAG-LA--PA 145 (485)
T ss_dssp EEEEEECH-HH---H--CCSSCSSBCTTSCBCTTH---HHHHHHHHHHHHHHTTTSSTTCCCSEEEEETGGGT-TH--HH
T ss_pred EEEEEeCh-hh---c--cCCCCccCCcccCCCCch---HHHHHHHHHHHHHHHHHhccCCCCCEEEeeccchh-HH--HH
Confidence 00000000 00 0 0000 0000000000000 0000001223444554 378999999985433 22 22
Q ss_pred HHH-hhcC-CEEEEEeCChhhh-hh-----hhcch-H-HH-----HHHHHHHHHHHhhhhccEEEEeChhhhccC-----
Q 010098 137 RWK-AKFR-FVVGIVHTNYLEY-VK-----REKND-R-LQ-----AFLLEFVNSWLARVHCHKVIRLSAATQEYP----- 196 (518)
Q Consensus 137 ~~~-~~~~-~~v~~~h~~~~~~-~~-----~~~~~-~-~~-----~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~----- 196 (518)
.++ +..+ |+|.++|+..... .. ..+.. . +. ......+.+...+ .||.++++|+..++..
T Consensus 146 ~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ad~vi~~S~~~~~~~~~~~~ 224 (485)
T 2qzs_A 146 YLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLY-YADHITAVSPTYAREITEPQF 224 (485)
T ss_dssp HHHHTTCSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHH-HCSEEEESSHHHHHHTTSHHH
T ss_pred HHhhccCCCCEEEEecCccccCCCCHHHHHhcCCCchhcccccccccccccHHHHHHH-hcCeEEecCHHHHHHHhcccc
Confidence 233 3344 8999999763210 00 00000 0 00 0000011222223 2799999998776632
Q ss_pred --------------CCceecccccCCCCcCcch-------------------hhHHHhhcCCCC--cccEEEEEEeeccc
Q 010098 197 --------------NSIVCNVHGVNPKFLEIGE-------------------KKMEQQQNGNKA--FTKGAYYIGRMVWS 241 (518)
Q Consensus 197 --------------~~~~~~~~GVd~~~~~~~~-------------------~~~~~~~~~~~~--~~~~il~vGr~~~~ 241 (518)
.+..++.+|||.+.|.+.. +...+...+.+. +.++++|+||+.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~vGrl~~~ 304 (485)
T 2qzs_A 225 AYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQ 304 (485)
T ss_dssp HTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHHHTCCCCTTSCEEEEEEEESGG
T ss_pred CcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccchhHHHHhHHHHHHHcCCCCCCCCeEEEEeccCccc
Confidence 3344556799998776543 223344556554 57899999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEeCCCC--hHHHHHHHHHcCCeEEEeCCCC-Ch-HHHHhhcCeeEecCCCCCCchH
Q 010098 242 KGYEELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLVVRVYPGRD-HA-DPIFHDYKVFLNPSTTDVVCTA 317 (518)
Q Consensus 242 Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~~~l~v~~~~~~~-~~-~~l~~~adv~v~pS~~E~~~~~ 317 (518)
||++.+++|+.++.+. +++|+|+|+|+. .+.+++++++++.++.++.+.. +. .++|+.||++|+||..|+||++
T Consensus 305 Kg~~~li~a~~~l~~~--~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~adv~v~pS~~E~~g~~ 382 (485)
T 2qzs_A 305 KGLDLVLEALPGLLEQ--GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLT 382 (485)
T ss_dssp GCHHHHHHHHHHHHHT--TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHHCSEEEECCSCCSSCSH
T ss_pred cCHHHHHHHHHHHhhC--CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHhCCEEEECCccCCCcHH
Confidence 9999999999999763 899999999863 6888999998876676444333 33 4899999999999999999999
Q ss_pred HHHHHHcCCeEEeeCCCC-ccccccC---------CcEEeeC--CHHHHHHHHHHHH---hCCCC--CCChHHH-hcCCH
Q 010098 318 TAEALAMGKIVVCANHPS-NDFFKQF---------PNCRTYD--GRNGFVEATLKAL---AEEPA--QPTDAQT-HQLSW 379 (518)
Q Consensus 318 ~lEAma~G~PVV~t~~g~-~e~i~~~---------~~g~~~~--d~~~l~~~i~~ll---~~~~~--~l~~~~~-~~~sw 379 (518)
++||||||+|||+|+.|+ .|++.++ .+|++++ |+++++++|.+++ +|++. +|+++++ ++|||
T Consensus 383 ~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~ 462 (485)
T 2qzs_A 383 QLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSW 462 (485)
T ss_dssp HHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHCCCCEEECCCCCccceeccCccccccccccceEEECCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCH
Confidence 999999999999999988 9999998 8999975 9999999999999 56664 7887777 89999
Q ss_pred HHHHHHHHHHHHhcC
Q 010098 380 ESATERFLQVAELVG 394 (518)
Q Consensus 380 ~~~~~~~~~~y~~~~ 394 (518)
+.++++++++|+...
T Consensus 463 ~~~~~~~~~ly~~~~ 477 (485)
T 2qzs_A 463 QVAAKSYRELYYRLK 477 (485)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999765
No 8
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=5e-35 Score=318.94 Aligned_cols=369 Identities=10% Similarity=0.087 Sum_probs=247.8
Q ss_pred cEEEEEeeccC---------CcccccccchHH--------HHHHHHhcCCeeEE----EEeccCCcccccccCCCCcccC
Q 010098 6 QHIAIFTTASL---------PWLTGTAVNPLF--------RAAYLAKDGERRVT----LVIPWLSLIHQKQVYPGNITFA 64 (518)
Q Consensus 6 ~rI~ivt~~~~---------P~~~G~~~~~~~--------~a~~L~~~gg~~V~----vi~~~~~~~~~~~~~p~~~~~~ 64 (518)
++|++++...+ |..||..++++. +++.|+++| |+|+ |+|...... .+..+.
T Consensus 279 ~~i~~is~hg~~~~~~~lG~~dtGGq~vyV~e~~~al~~ela~~L~~~G-~~V~~~V~v~Tr~~~~~-------~g~~y~ 350 (816)
T 3s28_A 279 FNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALEIEMLQRIKQQG-LNIKPRILILTRLLPDA-------VGTTCG 350 (816)
T ss_dssp CEEEEECCSSCCCSSSCTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCCEEEEEEECCTTC-------TTSSTT
T ss_pred eEEEEEcCCcccCccccCCCCCCCCceeeHHHHHHHHHHHHHHHHHHCC-CccceeeEEEeCCCCCC-------CCCccC
Confidence 79999999888 999998999984 566677788 9887 887733111 010111
Q ss_pred ChhHHHHHHHHhhhcccCCCCCCcccccCc-----ccccccccccc---h--hhHHhhcC--CCCCcEEEEcCCchhhhh
Q 010098 65 SPKEQEAYVRWWLEDRTGFTSTFDTRFYPG-----KFAADKKSILA---V--GDITEIIP--DEEADIAVLEEPEHLTWF 132 (518)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~i~~---~--~~l~~~i~--~~~~Dvi~~~~~~~~~~~ 132 (518)
.+..... ...-..-.++++.+. ++......... + ..+..++. ..+|||||+|..... +.
T Consensus 351 ~~~e~i~--------~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~~l~~il~~~~~~PDVIHsH~~~sg-lv 421 (816)
T 3s28_A 351 ERLERVY--------DSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSDGN-LV 421 (816)
T ss_dssp SSEEECT--------TCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHHHHHHHHHHCSSCCSEEEEEHHHHH-HH
T ss_pred Ccceeec--------CcCCeEEEEecCCCccccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCchHH-HH
Confidence 1000000 000001122233221 01111111000 1 11222222 347999999975543 33
Q ss_pred hchHHHHhhcC-CEEEEEeCChhhhhhhhcc-hHHHHHHHHH-----HHHHHhhhhccEEEEeChhhhc--------cCC
Q 010098 133 HHGKRWKAKFR-FVVGIVHTNYLEYVKREKN-DRLQAFLLEF-----VNSWLARVHCHKVIRLSAATQE--------YPN 197 (518)
Q Consensus 133 ~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~ad~vi~~S~~~~~--------~~~ 197 (518)
+..+++.++ |+|.+.|+........... +......... ...+..+ .||.||++|+..++ +..
T Consensus 422 --a~llar~~gvP~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~-~AD~VIa~S~~~~~~l~~~~~~y~~ 498 (816)
T 3s28_A 422 --ASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMN-HTDFIITSTFQEIAGSKETVGQYES 498 (816)
T ss_dssp --HHHHHHHHTCCEEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHH-HSSEEEESCHHHHHCCSSSCCTTGG
T ss_pred --HHHHHHHcCCCEEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHH-hCCEEEECCHHHHHHHHHHHHHhhh
Confidence 455666666 9999999875432221111 0000011111 1122333 38999999976654 111
Q ss_pred ---------------------CceecccccCCCCcCcchhhHH-------------------HhhcCC--CCcccEEEEE
Q 010098 198 ---------------------SIVCNVHGVNPKFLEIGEKKME-------------------QQQNGN--KAFTKGAYYI 235 (518)
Q Consensus 198 ---------------------~~~~~~~GVd~~~~~~~~~~~~-------------------~~~~~~--~~~~~~il~v 235 (518)
+..++++|||.+.|.+...... +...+. +++.++|+|+
T Consensus 499 ~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r~~lg~l~~~~~~vIl~v 578 (816)
T 3s28_A 499 HTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTM 578 (816)
T ss_dssp GSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBTTEESCBSCTTSCEEEEE
T ss_pred hhccccchhhhcccccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccccccchhhHHHHhcccCCCCCeEEEEE
Confidence 4455668999988866542211 112232 4567899999
Q ss_pred EeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCC-----------ChHHHHHHHHHcCCe--EEEeCCCCC------hH
Q 010098 236 GRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGE-----------DFDQIQRAAKKLKLV--VRVYPGRDH------AD 296 (518)
Q Consensus 236 Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~-----------~~~~l~~~~~~~~l~--v~~~~~~~~------~~ 296 (518)
||+.+.||++.+++|+.++.+..++++|+|+|+|+ ..+.++++++++++. +.+.|...+ +.
T Consensus 579 GRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~ 658 (816)
T 3s28_A 579 ARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELY 658 (816)
T ss_dssp CCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHH
T ss_pred ccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHH
Confidence 99999999999999999998888899999999998 457888999999985 667775544 33
Q ss_pred HHHh-hcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHH----hCCCC-
Q 010098 297 PIFH-DYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKAL----AEEPA- 367 (518)
Q Consensus 297 ~l~~-~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll----~~~~~- 367 (518)
.+|+ .+|+||+||..|+||++++||||||+|||+|+.|+ .|++.++.+|++++ |+++++++|.+++ +|++.
T Consensus 659 ~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV~dg~~Gllv~p~D~e~LA~aI~~lL~~Ll~d~~~~ 738 (816)
T 3s28_A 659 RYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKCKEDPSHW 738 (816)
T ss_dssp HHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTTBEEECTTSHHHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeCCCChHHHHccCCcEEEeCCCCHHHHHHHHHHHHHHhccCHHHH
Confidence 6666 57999999999999999999999999999999998 99999999999985 9999999997776 78875
Q ss_pred -CCChHHH----hcCCHHHHHHHHHHHHHhcC
Q 010098 368 -QPTDAQT----HQLSWESATERFLQVAELVG 394 (518)
Q Consensus 368 -~l~~~~~----~~~sw~~~~~~~~~~y~~~~ 394 (518)
+|+++++ ++|||+.++++++++|+...
T Consensus 739 ~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~g 770 (816)
T 3s28_A 739 DEISKGGLQRIEEKYTWQIYSQRLLTLTGVYG 770 (816)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 7888777 78999999999999999553
No 9
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=1.1e-35 Score=304.67 Aligned_cols=349 Identities=17% Similarity=0.211 Sum_probs=248.5
Q ss_pred cccEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCC
Q 010098 4 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGF 83 (518)
Q Consensus 4 ~~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (518)
+.|||+++++.+.|..+|.+.....++++|.+.| |+|+++++..... .++....... ++.
T Consensus 19 ~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G-~~V~v~~~~~~~~----~~~~~~~~~~--------------~~~- 78 (406)
T 2gek_A 19 SHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAG-HEVSVLAPASPHV----KLPDYVVSGG--------------KAV- 78 (406)
T ss_dssp --CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTT-CEEEEEESCCTTS----CCCTTEEECC--------------CCC-
T ss_pred CcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCC-CeEEEEecCCccc----cCCcccccCC--------------cEE-
Confidence 3489999998776777888889999999999998 9999998832111 0110000000 000
Q ss_pred CCCCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcc
Q 010098 84 TSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKN 162 (518)
Q Consensus 84 ~~~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~ 162 (518)
.++... ..............+.+++++.+||+||++.+....+ +..+.+..+ |+|.++|+.+....
T Consensus 79 ----~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~Dii~~~~~~~~~~---~~~~~~~~~~~~i~~~h~~~~~~~----- 145 (406)
T 2gek_A 79 ----PIPYNG-SVARLRFGPATHRKVKKWIAEGDFDVLHIHEPNAPSL---SMLALQAAEGPIVATFHTSTTKSL----- 145 (406)
T ss_dssp -----------------CCHHHHHHHHHHHHHHCCSEEEEECCCSSSH---HHHHHHHEESSEEEEECCCCCSHH-----
T ss_pred ----eccccC-CcccccccHHHHHHHHHHHHhcCCCEEEECCccchHH---HHHHHHhcCCCEEEEEcCcchhhh-----
Confidence 000000 0000000000124577778888999999998766532 223444434 89999998654321
Q ss_pred hHHHHHHHHHHHHHHhhhhccEEEEeChhhhcc-----CCCceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEe
Q 010098 163 DRLQAFLLEFVNSWLARVHCHKVIRLSAATQEY-----PNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGR 237 (518)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~-----~~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr 237 (518)
....+.+.+. ...+ .+|.++++|+..++. ....++..+|+|...+.+... ....+.+.+.++|+|+
T Consensus 146 --~~~~~~~~~~-~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~vi~~~v~~~~~~~~~~-----~~~~~~~~~~i~~~G~ 216 (406)
T 2gek_A 146 --TLSVFQGILR-PYHE-KIIGRIAVSDLARRWQMEALGSDAVEIPNGVDVASFADAPL-----LDGYPREGRTVLFLGR 216 (406)
T ss_dssp --HHHHHHSTTH-HHHT-TCSEEEESSHHHHHHHHHHHSSCEEECCCCBCHHHHHTCCC-----CTTCSCSSCEEEEESC
T ss_pred --hHHHHHHHHH-HHHh-hCCEEEECCHHHHHHHHHhcCCCcEEecCCCChhhcCCCch-----hhhccCCCeEEEEEee
Confidence 1111222222 2222 379999999877663 333334556887765543321 1122224579999999
Q ss_pred e-cccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCCh--HHHHhhcCeeEecCC-CCC
Q 010098 238 M-VWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHA--DPIFHDYKVFLNPST-TDV 313 (518)
Q Consensus 238 ~-~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~--~~l~~~adv~v~pS~-~E~ 313 (518)
+ .+.||++.+++++.++.++.|+++|+++|+|+. +.++++++++.-.+.+.|..++. .++|+.||++|+||. .|+
T Consensus 217 ~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~~~~-~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~e~ 295 (406)
T 2gek_A 217 YDEPRKGMAVLLAALPKLVARFPDVEILIVGRGDE-DELREQAGDLAGHLRFLGQVDDATKASAMRSADVYCAPHLGGES 295 (406)
T ss_dssp TTSGGGCHHHHHHHHHHHHTTSTTCEEEEESCSCH-HHHHHHTGGGGGGEEECCSCCHHHHHHHHHHSSEEEECCCSCCS
T ss_pred eCccccCHHHHHHHHHHHHHHCCCeEEEEEcCCcH-HHHHHHHHhccCcEEEEecCCHHHHHHHHHHCCEEEecCCCCCC
Confidence 9 999999999999999998889999999999988 88888888775458888877665 699999999999996 999
Q ss_pred CchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEee--CCHHHHHHHHHHHHhCCCC--CCChHHH---hcCCHHHHHHH
Q 010098 314 VCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTY--DGRNGFVEATLKALAEEPA--QPTDAQT---HQLSWESATER 385 (518)
Q Consensus 314 ~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~--~d~~~l~~~i~~ll~~~~~--~l~~~~~---~~~sw~~~~~~ 385 (518)
||++++|||+||+|||+++.++ .|++.++.+|+++ +|+++++++|.++++|++. +++++++ ++|||+..+++
T Consensus 296 ~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 375 (406)
T 2gek_A 296 FGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVHRYDWSVVSAQ 375 (406)
T ss_dssp SCHHHHHHHHHTCEEEECCCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHGGGGBHHHHHHH
T ss_pred CchHHHHHHHcCCCEEEecCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999999999987 9999999999998 5999999999999998875 7777766 68999999999
Q ss_pred HHHHHHhcCC
Q 010098 386 FLQVAELVGD 395 (518)
Q Consensus 386 ~~~~y~~~~~ 395 (518)
+.++|+....
T Consensus 376 ~~~~~~~~~~ 385 (406)
T 2gek_A 376 IMRVYETVSG 385 (406)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHh
Confidence 9999997653
No 10
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=1.5e-35 Score=311.37 Aligned_cols=372 Identities=13% Similarity=0.079 Sum_probs=243.9
Q ss_pred cEEEEEeeccCCc--ccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCC-------------CcccCChhHHH
Q 010098 6 QHIAIFTTASLPW--LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPG-------------NITFASPKEQE 70 (518)
Q Consensus 6 ~rI~ivt~~~~P~--~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~-------------~~~~~~~~~~~ 70 (518)
|||+++++.++|. .+|.+.....++++|.++| |+|+|+++....... .++. ...+.....
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G-~~V~vi~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-- 75 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHG-VRTRTLIPGYPAVKA--AVTDPVKCFEFTDLLGEKADLLEVQH-- 75 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTT-CEEEEEEECCHHHHH--HCCSCEEEEEESCSSSCCEEEEEEEE--
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHHcC-CeEEEEecccccccc--cccccceeEEEEEecCCeEEEEEEEe--
Confidence 7999999989884 6888888899999999998 999999984311000 0000 000000000
Q ss_pred HHHHHhhhcccCCCCCCcc---c--ccCc----ccccc-cccccc---hhhHHhhc-CCCCCcEEEEcCCchhhhhhchH
Q 010098 71 AYVRWWLEDRTGFTSTFDT---R--FYPG----KFAAD-KKSILA---VGDITEII-PDEEADIAVLEEPEHLTWFHHGK 136 (518)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~i---~--~~~~----~~~~~-~~~i~~---~~~l~~~i-~~~~~Dvi~~~~~~~~~~~~~~~ 136 (518)
.. ..+...+.... . .|.. .+... .+.... ...+.+.+ ++.+||+||+|+.... ++ +.
T Consensus 76 ~g------v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiIh~~~~~~~-~~--~~ 146 (485)
T 1rzu_A 76 ER------LDLLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAA-MT--PV 146 (485)
T ss_dssp TT------EEEEEEECHHHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHHHHT-TH--HH
T ss_pred cC------ceEEEEeChHHhCCCccccCCcccccccchHHHHHHHHHHHHHHHHHhccCCCCCEEEecccchh-HH--HH
Confidence 00 00000000000 0 0000 00000 000000 11223333 5789999999985432 22 22
Q ss_pred HHHhh--cC-CEEEEEeCChhhh------hhhhcch--HHH----HHH-HHHHHHHHhhhhccEEEEeChhhhccCC---
Q 010098 137 RWKAK--FR-FVVGIVHTNYLEY------VKREKND--RLQ----AFL-LEFVNSWLARVHCHKVIRLSAATQEYPN--- 197 (518)
Q Consensus 137 ~~~~~--~~-~~v~~~h~~~~~~------~~~~~~~--~~~----~~~-~~~~~~~~~~~~ad~vi~~S~~~~~~~~--- 197 (518)
.+++. .+ |+|.++|+..... ....+.. .+. ... ...+.+...+ .||.++++|+..++...
T Consensus 147 ~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ad~vi~~S~~~~~~~~~~~ 225 (485)
T 1rzu_A 147 YMRYAETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQ-TATALSTVSPSYAEEILTAE 225 (485)
T ss_dssp HHHHSSSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHH-HCSEEEESCHHHHHHTTSHH
T ss_pred HHhhcccCCCCEEEEecCccccCCCCHHHHhhcCCChhhcccccccccccccHHHHHHh-hcCEEEecCHhHHHHHhccc
Confidence 23332 34 8999999763210 0000000 000 000 0011222223 27999999987766322
Q ss_pred --------------CceecccccCCCCcCcch-------------------hhHHHhhcCCCCc-ccEEEEEEeecccCC
Q 010098 198 --------------SIVCNVHGVNPKFLEIGE-------------------KKMEQQQNGNKAF-TKGAYYIGRMVWSKG 243 (518)
Q Consensus 198 --------------~~~~~~~GVd~~~~~~~~-------------------~~~~~~~~~~~~~-~~~il~vGr~~~~Kg 243 (518)
+..++.+|||.+.|.+.. +...+...+.+.+ .++++|+||+.++||
T Consensus 226 ~g~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~vGrl~~~Kg 305 (485)
T 1rzu_A 226 FGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQKG 305 (485)
T ss_dssp HHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTCCCSSSCEEEEESCBSTTTT
T ss_pred cCcchHHHHHhhcCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhcCCCCCCCeEEEEEccCccccC
Confidence 234455799998776543 2233445566553 679999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCC--hHHHHHHHHHcCCeEEEeCCCC-Ch-HHHHhhcCeeEecCCCCCCchHHH
Q 010098 244 YEELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLVVRVYPGRD-HA-DPIFHDYKVFLNPSTTDVVCTATA 319 (518)
Q Consensus 244 ~~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~~~l~v~~~~~~~-~~-~~l~~~adv~v~pS~~E~~~~~~l 319 (518)
++.+++|+.++.+. +++|+|+|+|+. .+.+++++++++.++.++.+.. +. .++|+.||++|+||..|+||++++
T Consensus 306 ~~~li~a~~~l~~~--~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~adv~v~pS~~E~~~~~~l 383 (485)
T 1rzu_A 306 IDLMAEAVDEIVSL--GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAGCDAIIIPSRFEPCGLTQL 383 (485)
T ss_dssp HHHHHTTHHHHHHT--TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHHCSEEEECCSCCSSCSHHH
T ss_pred HHHHHHHHHHHHhc--CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhcCCEEEECcccCCCCHHHH
Confidence 99999999999763 899999999874 6888999998876677444433 33 489999999999999999999999
Q ss_pred HHHHcCCeEEeeCCCC-ccccccC---------CcEEeeC--CHHHHHHHHHHHH---hCCCC--CCChHHH-hcCCHHH
Q 010098 320 EALAMGKIVVCANHPS-NDFFKQF---------PNCRTYD--GRNGFVEATLKAL---AEEPA--QPTDAQT-HQLSWES 381 (518)
Q Consensus 320 EAma~G~PVV~t~~g~-~e~i~~~---------~~g~~~~--d~~~l~~~i~~ll---~~~~~--~l~~~~~-~~~sw~~ 381 (518)
||||||+|||+|+.|+ .|++.++ .+|++++ |+++++++|.+++ +|++. +|+++++ ++|||+.
T Consensus 384 EAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~ 463 (485)
T 1rzu_A 384 YALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQKLGMKSDVSWEK 463 (485)
T ss_dssp HHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTCCCBHHH
T ss_pred HHHHCCCCEEEeCCCChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCChHH
Confidence 9999999999999998 9999998 8999975 9999999999999 67664 7888777 8999999
Q ss_pred HHHHHHHHHHhcC
Q 010098 382 ATERFLQVAELVG 394 (518)
Q Consensus 382 ~~~~~~~~y~~~~ 394 (518)
+++++.++|+...
T Consensus 464 ~~~~~~~~y~~~~ 476 (485)
T 1rzu_A 464 SAGLYAALYSQLI 476 (485)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999665
No 11
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=9e-35 Score=307.14 Aligned_cols=212 Identities=18% Similarity=0.197 Sum_probs=168.2
Q ss_pred hccEEEEeChhhhc-c---------------CCCceecccccCCCCcCcchhh--------------------HHHhhcC
Q 010098 181 HCHKVIRLSAATQE-Y---------------PNSIVCNVHGVNPKFLEIGEKK--------------------MEQQQNG 224 (518)
Q Consensus 181 ~ad~vi~~S~~~~~-~---------------~~~~~~~~~GVd~~~~~~~~~~--------------------~~~~~~~ 224 (518)
+||.|+++|+..++ + ..+...++||||.+.|+|.... ..+...+
T Consensus 241 ~ad~v~tVS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~~g 320 (536)
T 3vue_A 241 EADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAG 320 (536)
T ss_dssp HCSEEEESCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHHTT
T ss_pred hccEEEEcCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHHHHhcC
Confidence 48999999976654 1 1234456689999888764211 1112233
Q ss_pred C--CCcccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC--hHHHHHHHHHcCCeEEEeCCCCC--hHHH
Q 010098 225 N--KAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLVVRVYPGRDH--ADPI 298 (518)
Q Consensus 225 ~--~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~~~l~v~~~~~~~~--~~~l 298 (518)
+ +++.++|+|+||+.++||++.|++|+.++.++ +.+|+++|.|+. ...++.....++..+.+.+..++ ...+
T Consensus 321 l~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~--~~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 398 (536)
T 3vue_A 321 LPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQE--DVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLI 398 (536)
T ss_dssp SCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTTS--SCEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCCHHHHHHH
T ss_pred CCCCCCCcEEEEEeeccccCChHHHHHHHHHhHhh--CCeEEEEeccCchHHHHHHHHHhhcCCceEEEEeccHHHHHHH
Confidence 3 45689999999999999999999999999765 678999998875 35567777788878888776554 4489
Q ss_pred HhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEe----------eC--CHHHHHHHHHHHHhCC
Q 010098 299 FHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRT----------YD--GRNGFVEATLKALAEE 365 (518)
Q Consensus 299 ~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~----------~~--d~~~l~~~i~~ll~~~ 365 (518)
|+.||+||+||.+|+||++++|||+||+|||+|+.|| .|++.++.+|+. ++ |+++++++|.++++..
T Consensus 399 ~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~~~ 478 (536)
T 3vue_A 399 MAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVV 478 (536)
T ss_dssp HHHCSEEEECCSCCSSCSHHHHHHHTTCCEEECSCTHHHHHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHhhheeecccccCCCCHHHHHHHHcCCCEEEcCCCCchheeeCCCCccccccCCCceeEECCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998 999999999983 43 7899999999988632
Q ss_pred --CC--CCChHHH-hcCCHHHHHHHHHHHHHhcC
Q 010098 366 --PA--QPTDAQT-HQLSWESATERFLQVAELVG 394 (518)
Q Consensus 366 --~~--~l~~~~~-~~~sw~~~~~~~~~~y~~~~ 394 (518)
+. ++.+++. ++|||++++++|+++|+...
T Consensus 479 ~~~~~~~~~~~am~~~fSW~~~A~~y~~ly~~L~ 512 (536)
T 3vue_A 479 GTPAYEEMVRNCMNQDLSWKGPAKNWENVLLGLG 512 (536)
T ss_dssp TSHHHHHHHHHHHHSCCSSHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 22 4555554 78999999999999999754
No 12
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=8.6e-35 Score=299.07 Aligned_cols=334 Identities=13% Similarity=0.043 Sum_probs=238.1
Q ss_pred cEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCC
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTS 85 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (518)
|||+++++.+ |..+|.+.....+++.|.+. |+|++++.... . ...++.. .... .. ..... + ..
T Consensus 1 MkI~~v~~~~-p~~gG~~~~~~~l~~~L~~~--~~V~v~~~~~~--g-~~~~~~~-~~~~-~~---~~~~~---~-~~-- 63 (413)
T 3oy2_A 1 MKLIIVGAHS-SVPSGYGRVMRAIVPRISKA--HEVIVFGIHAF--G-RSVHANI-EEFD-AQ---TAEHV---R-GL-- 63 (413)
T ss_dssp CEEEEEEECT-TCCSHHHHHHHHHHHHHTTT--SEEEEEEESCC--S-CCSCSSS-EEEE-HH---HHHHH---T-TC--
T ss_pred CeEEEecCCC-CCCCCHHHHHHHHHHHHHhc--CCeEEEeecCC--C-ccccccc-ccCC-cc---ccccc---c-cc--
Confidence 7999999866 77788888889999999986 99999987321 1 1111110 0000 01 00000 0 00
Q ss_pred CCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-----CEEEEEeCChhhhhhhh
Q 010098 86 TFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-----FVVGIVHTNYLEYVKRE 160 (518)
Q Consensus 86 ~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~h~~~~~~~~~~ 160 (518)
... ...+..+.+.+++.+||+||++++... + +..+....+ +.+...|.........
T Consensus 64 -~~~-------------~~~~~~l~~~l~~~~~Div~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 124 (413)
T 3oy2_A 64 -NEQ-------------GFYYSGLSEFIDVHKPDIVMIYNDPIV--I--GNYLLAMGKCSHRTKIVLYVDLVSKNIREN- 124 (413)
T ss_dssp -CST-------------TCCHHHHHHHHHHHCCSEEEEEECHHH--H--HHHHHHGGGCCSCCEEEEEECCCSBSCCGG-
T ss_pred -ccc-------------cchHHHHHHHHHhcCCCEEEEcchHHH--H--HHHHHHhccCCCCCceeeeccccchhhHHH-
Confidence 000 011334567777889999999955433 2 111222211 3455555333221100
Q ss_pred cchHHHHHHHHHHHHHHhhhhcc--EEEEeChhhhcc------CCCceecccccCCCCcCcchhhHHHhhcCCCC--ccc
Q 010098 161 KNDRLQAFLLEFVNSWLARVHCH--KVIRLSAATQEY------PNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKA--FTK 230 (518)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~ad--~vi~~S~~~~~~------~~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~--~~~ 230 (518)
+...+.+ +| .++++|+..++. ..+..+.++|+|.+.|. ..+...+.++ +.+
T Consensus 125 ------------~~~~~~~--~~~~~ii~~S~~~~~~~~~~~~~~~~~vi~ngvd~~~~~-----~~~~~~~~~~~~~~~ 185 (413)
T 3oy2_A 125 ------------LWWIFSH--PKVVGVMAMSKCWISDICNYGCKVPINIVSHFVDTKTIY-----DARKLVGLSEYNDDV 185 (413)
T ss_dssp ------------GGGGGGC--TTEEEEEESSTHHHHHHHHTTCCSCEEECCCCCCCCCCT-----THHHHTTCGGGTTSE
T ss_pred ------------HHHHHhc--cCCceEEEcCHHHHHHHHHcCCCCceEEeCCCCCHHHHH-----HHHHhcCCCcccCce
Confidence 1222223 56 999999887662 23445556799988772 2233445544 578
Q ss_pred EEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCh------HHHHHHHHHcCCe---------EEEeCCCC--
Q 010098 231 GAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDF------DQIQRAAKKLKLV---------VRVYPGRD-- 293 (518)
Q Consensus 231 ~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~------~~l~~~~~~~~l~---------v~~~~~~~-- 293 (518)
.++|+|++.++||++.+++|+.++.++.|+++|+|+|+|+.. +.++++++++++. +.+.|..+
T Consensus 186 ~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~ 265 (413)
T 3oy2_A 186 LFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDE 265 (413)
T ss_dssp EEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHH
T ss_pred EEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHH
Confidence 999999999999999999999999999999999999999865 8889999999887 33445444
Q ss_pred ChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCc---------------EE--ee--CCHHH
Q 010098 294 HADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPN---------------CR--TY--DGRNG 353 (518)
Q Consensus 294 ~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~---------------g~--~~--~d~~~ 353 (518)
++.++|+.||++|+||..|+||++++||||||+|||+|+.|+ .|++.++.+ |+ ++ +|+++
T Consensus 266 ~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~ 345 (413)
T 3oy2_A 266 RVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDD 345 (413)
T ss_dssp HHHHHHHHCSEEEECCSCCSSCHHHHHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHH
T ss_pred HHHHHHHhCCEEEeCCCcCCCCcHHHHHHHcCCCEEEcCCCChHHHHccCcccccccccccccccccCcceeeCCCCHHH
Confidence 566999999999999999999999999999999999999998 999998887 77 65 49999
Q ss_pred HHHHHHHHHhCCCC--CCChHHH----hcCCHHHHHHHHHHHHHhcCC
Q 010098 354 FVEATLKALAEEPA--QPTDAQT----HQLSWESATERFLQVAELVGD 395 (518)
Q Consensus 354 l~~~i~~ll~~~~~--~l~~~~~----~~~sw~~~~~~~~~~y~~~~~ 395 (518)
++++| ++++|++. +|+++++ ++|||+.+++++.++|+....
T Consensus 346 la~~i-~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 392 (413)
T 3oy2_A 346 LVEAF-TFFKDEKNRKEYGKRVQDFVKTKPTWDDISSDIIDFFNSLLR 392 (413)
T ss_dssp HHHHH-HHTTSHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHH-HHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 99999 99998876 7777777 689999999999999997653
No 13
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=2.3e-35 Score=298.84 Aligned_cols=344 Identities=13% Similarity=0.079 Sum_probs=242.5
Q ss_pred cEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCC
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTS 85 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (518)
|||++++..++| .+|.+.....++++|.+.| |+|+++++... .. .++++.+. .+..
T Consensus 1 MkIl~i~~~~~~-~gG~~~~~~~l~~~L~~~G-~~V~v~~~~~~--~~---~~~~~~v~---------------~~~~-- 56 (374)
T 2iw1_A 1 MIVAFCLYKYFP-FGGLQRDFMRIASTVAARG-HHVRVYTQSWE--GD---CPKAFELI---------------QVPV-- 56 (374)
T ss_dssp -CEEEECSEECT-TCHHHHHHHHHHHHHHHTT-CCEEEEESEEC--SC---CCTTCEEE---------------ECCC--
T ss_pred CeEEEEEeecCC-CcchhhHHHHHHHHHHhCC-CeEEEEecCCC--CC---CCCCcEEE---------------EEcc--
Confidence 789999998877 5888888999999999998 99999988321 00 11111000 0000
Q ss_pred CCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC--CEEEEEeCChhhhhhhhcch
Q 010098 86 TFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLEYVKREKND 163 (518)
Q Consensus 86 ~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~--~~v~~~h~~~~~~~~~~~~~ 163 (518)
... . . ..........+.+.+++.+||+||++......... +..... +.+.+.|...... ..
T Consensus 57 -~~~---~-~---~~~~~~~~~~l~~~i~~~~~Dvv~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-----~~ 119 (374)
T 2iw1_A 57 -KSH---T-N---HGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVY----FAADVCYAEKVAQEKGFLYRL-----TS 119 (374)
T ss_dssp -CCS---S-H---HHHHHHHHHHHHHHHHHSCCSEEEESSCCTTCSEE----ECCSCCHHHHHHHHCCHHHHT-----SH
T ss_pred -Ccc---c-c---hhhHHHHHHHHHHHHhccCCCEEEEecCCCCceee----eccccccceeeeecccchhhh-----cH
Confidence 000 0 0 00011113346777888899999998754321110 111101 2222223211110 00
Q ss_pred HHHHHHHHHHHHHHhh-hhccEEEEeChhhhccC--------CCceecccccCCCCcCcchh----hHHHhhcCCCCccc
Q 010098 164 RLQAFLLEFVNSWLAR-VHCHKVIRLSAATQEYP--------NSIVCNVHGVNPKFLEIGEK----KMEQQQNGNKAFTK 230 (518)
Q Consensus 164 ~~~~~~~~~~~~~~~~-~~ad~vi~~S~~~~~~~--------~~~~~~~~GVd~~~~~~~~~----~~~~~~~~~~~~~~ 230 (518)
.......+.+...+ ..+|.++++|+..++.. .+..+..+|+|.+.+.+... ...+...+.+++.+
T Consensus 120 --~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (374)
T 2iw1_A 120 --RYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQN 197 (374)
T ss_dssp --HHHHHHHHHHHHHSTTCCCEEEESCHHHHHHHHHHHCCCGGGEEECCCCCCGGGSGGGSCTTHHHHHHHHTTCCTTCE
T ss_pred --HHHHHHHHHHHHhhccCCcEEEEcCHHHHHHHHHHhCCChhheEEecCCcCHHhcCcccchhHHHHHHHHhCCCCCCe
Confidence 11122222232222 14899999998776621 22344557999877765332 23345566667788
Q ss_pred EEEEEEeecccCCHHHHHHHHHHHHHh-cCCcEEEEEeCCCChHHHHHHHHHcCC--eEEEeCCCCChHHHHhhcCeeEe
Q 010098 231 GAYYIGRMVWSKGYEELLGLLNIYHKE-LAGLEMDLYGNGEDFDQIQRAAKKLKL--VVRVYPGRDHADPIFHDYKVFLN 307 (518)
Q Consensus 231 ~il~vGr~~~~Kg~~~ll~a~~~l~~~-~~~~~l~ivG~g~~~~~l~~~~~~~~l--~v~~~~~~~~~~~l~~~adv~v~ 307 (518)
.++|+|++.+.||++.+++++..+.+. .++++|+++|+|+ .++++++++++++ .+.+.|..+++.++|+.||++|+
T Consensus 198 ~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~g~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~ 276 (374)
T 2iw1_A 198 LLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDK-PRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLH 276 (374)
T ss_dssp EEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSC-CHHHHHHHHHHTCGGGEEEESCCSCHHHHHHHCSEEEE
T ss_pred EEEEeccchhhcCHHHHHHHHHHhHhccCCceEEEEEcCCC-HHHHHHHHHHcCCCCcEEECCCcccHHHHHHhcCEEEe
Confidence 999999999999999999999998776 5789999999987 4788889998886 48889988899999999999999
Q ss_pred cCCCCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEeeC---CHHHHHHHHHHHHhCCCC--CCChHHH---hcCC
Q 010098 308 PSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD---GRNGFVEATLKALAEEPA--QPTDAQT---HQLS 378 (518)
Q Consensus 308 pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~~---d~~~l~~~i~~ll~~~~~--~l~~~~~---~~~s 378 (518)
||..|+||++++||||||+|||+++.++ .|++.++.+|++++ |+++++++|.++++|++. +++++++ ++++
T Consensus 277 ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 356 (374)
T 2iw1_A 277 PAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQD 356 (374)
T ss_dssp CCSCCSSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSC
T ss_pred ccccCCcccHHHHHHHCCCCEEEecCCCchhhhccCCceEEeCCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999987 99999999999874 999999999999998875 7888777 6789
Q ss_pred HHHHHHHHHHHHHhc
Q 010098 379 WESATERFLQVAELV 393 (518)
Q Consensus 379 w~~~~~~~~~~y~~~ 393 (518)
|+...+++.++++..
T Consensus 357 ~~~~~~~~~~~l~~~ 371 (374)
T 2iw1_A 357 LYSLPEKAADIITGG 371 (374)
T ss_dssp CSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998854
No 14
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=2.8e-34 Score=287.78 Aligned_cols=298 Identities=13% Similarity=-0.023 Sum_probs=231.9
Q ss_pred ccEEEEEeec-----------cCCc-ccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHH
Q 010098 5 QQHIAIFTTA-----------SLPW-LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAY 72 (518)
Q Consensus 5 ~~rI~ivt~~-----------~~P~-~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 72 (518)
+|||++++.. ++|. .+|.+.....+++.|.+.| |+|+++++.... . ..+.
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G-~~v~v~~~~~~~--~---~~~~------------ 64 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELG-HEVFLLGAPGSP--A---GRPG------------ 64 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTT-CEEEEESCTTSC--C---CSTT------------
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcC-CeEEEEecCCCC--C---CCCc------------
Confidence 4899999998 4454 4777788888999999998 999999883210 0 0000
Q ss_pred HHHhhhcccCCCCCCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeC
Q 010098 73 VRWWLEDRTGFTSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHT 151 (518)
Q Consensus 73 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~ 151 (518)
..+.. .+. +..+.+++++.+||+||+|.+... ++ ..+..+ | |.++|+
T Consensus 65 ------~~~~~--------~~~-----------~~~l~~~l~~~~~Dvi~~~~~~~~-~~-----~~~~~~~p-v~~~h~ 112 (342)
T 2iuy_A 65 ------LTVVP--------AGE-----------PEEIERWLRTADVDVVHDHSGGVI-GP-----AGLPPGTA-FISSHH 112 (342)
T ss_dssp ------EEECS--------CCS-----------HHHHHHHHHHCCCSEEEECSSSSS-CS-----TTCCTTCE-EEEEEC
T ss_pred ------ceecc--------CCc-----------HHHHHHHHHhcCCCEEEECCchhh-HH-----HHhhcCCC-EEEecC
Confidence 01100 000 224677788889999999997654 12 122333 8 999997
Q ss_pred ChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEEEEeChhhhccCC---CceecccccCCCCcCcchhhHHHhhcCCCCc
Q 010098 152 NYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPN---SIVCNVHGVNPKFLEIGEKKMEQQQNGNKAF 228 (518)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~---~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~ 228 (518)
.+.... .+|.++++|+..++... +..+..+|+|.+.+.+... . ..+
T Consensus 113 ~~~~~~-----------------------~~d~ii~~S~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~-------~-~~~ 161 (342)
T 2iuy_A 113 FTTRPV-----------------------NPVGCTYSSRAQRAHCGGGDDAPVIPIPVDPARYRSAAD-------Q-VAK 161 (342)
T ss_dssp SSSBCS-----------------------CCTTEEESCHHHHHHTTCCTTSCBCCCCBCGGGSCCSTT-------C-CCC
T ss_pred CCCCcc-----------------------cceEEEEcCHHHHHHHhcCCceEEEcCCCChhhcCcccc-------c-CCC
Confidence 754321 16999999988887543 3344557898877664322 1 123
Q ss_pred ccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCCh--HHHHhhcCeeE
Q 010098 229 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHA--DPIFHDYKVFL 306 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~--~~l~~~adv~v 306 (518)
.+.++|+|++.+.||++.+++++.++ +++|+++|+|++.+.+++++++++-.+++.|..++. .++|+.||++|
T Consensus 162 ~~~i~~vG~~~~~Kg~~~li~a~~~~-----~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~adv~v 236 (342)
T 2iuy_A 162 EDFLLFMGRVSPHKGALEAAAFAHAC-----GRRLVLAGPAWEPEYFDEITRRYGSTVEPIGEVGGERRLDLLASAHAVL 236 (342)
T ss_dssp CSCEEEESCCCGGGTHHHHHHHHHHH-----TCCEEEESCCCCHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHHCSEEE
T ss_pred CCEEEEEeccccccCHHHHHHHHHhc-----CcEEEEEeCcccHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHhCCEEE
Confidence 56899999999999999999999876 789999999999999999999888668888887766 69999999999
Q ss_pred ecCC----------CCCCchHHHHHHHcCCeEEeeCCCC-cccccc--CCcEEeeC-CHHHHHHHHHHHHhCCCCCCChH
Q 010098 307 NPST----------TDVVCTATAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD-GRNGFVEATLKALAEEPAQPTDA 372 (518)
Q Consensus 307 ~pS~----------~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~--~~~g~~~~-d~~~l~~~i~~ll~~~~~~l~~~ 372 (518)
+||. .|+||++++||||||+|||+++.++ .|++.+ +.+|++++ |+++++++|.++++ +++
T Consensus 237 ~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~~~~e~~~~~~~~~g~~~~~d~~~l~~~i~~l~~------~~~ 310 (342)
T 2iuy_A 237 AMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNGCLAEIVPSVGEVVGYGTDFAPDEARRTLAGLPA------SDE 310 (342)
T ss_dssp ECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTTTHHHHGGGGEEECCSSSCCCHHHHHHHHHTSCC------HHH
T ss_pred ECCcccccccccccccCccHHHHHHHhcCCCEEEcCCCChHHHhcccCCCceEEcCCCHHHHHHHHHHHHH------HHH
Confidence 9999 8999999999999999999999998 999999 89999987 99999999999887 444
Q ss_pred HH----hcCCHHHHHHHHHHHHHhcC
Q 010098 373 QT----HQLSWESATERFLQVAELVG 394 (518)
Q Consensus 373 ~~----~~~sw~~~~~~~~~~y~~~~ 394 (518)
++ ++|||+.+++++.++|+...
T Consensus 311 ~~~~~~~~~s~~~~~~~~~~~~~~~~ 336 (342)
T 2iuy_A 311 VRRAAVRLWGHVTIAERYVEQYRRLL 336 (342)
T ss_dssp HHHHHHHHHBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 44 78999999999999999654
No 15
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=99.97 E-value=6.8e-31 Score=269.43 Aligned_cols=331 Identities=9% Similarity=0.054 Sum_probs=205.6
Q ss_pred cccEEEEEeeccCCc-ccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccC
Q 010098 4 KQQHIAIFTTASLPW-LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTG 82 (518)
Q Consensus 4 ~~~rI~ivt~~~~P~-~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 82 (518)
++|||++++..|.|. ..|+...+..++++|+++| |+|+|+++... + ... . +.........
T Consensus 45 ~~mrI~~v~~~~~p~~~~GG~~~v~~la~~L~~~G-heV~Vvt~~~~--------~------~~~---~-~~~~~~~~~~ 105 (413)
T 2x0d_A 45 KGKRLNLLVPSINQEHMFGGISTALKLFEQFDNKK-FKKRIILTDAT--------P------NPK---D-LQSFKSFKYV 105 (413)
T ss_dssp CSCEEEEEESCCCGGGCSHHHHHHHHHHTTSCTTT-CEEEEEESSCC--------C------CHH---H-HGGGTTSEEC
T ss_pred CCceEEEEeCCCCccccccHHHHHHHHHHHHHHcC-CceEEEEecCC--------C------ChH---H-HHhhhcccee
Confidence 459999999999886 3455566889999999998 99999998320 1 001 0 1111000000
Q ss_pred CCCCCcccccCcccccccccccch-hhHHhhcCCCCCcEEEEcCCchhhhhhchHHHH----h----hcCCEEEEEeCCh
Q 010098 83 FTSTFDTRFYPGKFAADKKSILAV-GDITEIIPDEEADIAVLEEPEHLTWFHHGKRWK----A----KFRFVVGIVHTNY 153 (518)
Q Consensus 83 ~~~~~~i~~~~~~~~~~~~~i~~~-~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~----~----~~~~~v~~~h~~~ 153 (518)
..... .....+ +..+ ..+...+...++|+||++..... .. +..+. . ...+.+..+|+..
T Consensus 106 ~~~~~--~~~~~~-------i~~~~~~~~~~~~~~~~Dvv~a~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~ 173 (413)
T 2x0d_A 106 MPEED--KDFALQ-------IVPFNDRYNRTIPVAKHDIFIATAWWTA-YA--AQRIVSWQSDTYGIPPNKILYIIQDFE 173 (413)
T ss_dssp CTTCC--CCCSEE-------EEECSCCTTCCEEECTTEEEEECSHHHH-HH--HHHHHHHHHHHHTCCCCCEEEEECSCG
T ss_pred eccCC--ccccce-------eeeccccccccccCCCCCEEEEehHHHH-HH--HHHhhhhhhhhcccccCcEEEEEeech
Confidence 00000 000000 0000 00111222346999999874332 11 11121 0 1136787888654
Q ss_pred hhhhhhhcchHHHHHHHHHHHHHHhhhhcc--EEEEeChhhhccCC-------CceecccccCCCCcCcchhhHHHhhcC
Q 010098 154 LEYVKREKNDRLQAFLLEFVNSWLARVHCH--KVIRLSAATQEYPN-------SIVCNVHGVNPKFLEIGEKKMEQQQNG 224 (518)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad--~vi~~S~~~~~~~~-------~~~~~~~GVd~~~~~~~~~~~~~~~~~ 224 (518)
+.+.. .+. ...+.....+. ++ .+|++|+.+++... +.....+|+|.+.|.+. ..
T Consensus 174 ~~~~~---~~~-----~~~~~~~~~~~-~~~~~vi~~S~~~~~~l~~~g~~~~~~~~i~~g~d~~~~~~~-------~~- 236 (413)
T 2x0d_A 174 PGFYQ---WSS-----QYVLAESTYKY-RGPQIAVFNSELLKQYFNNKGYNFTDEYFFQPKINTTLKNYI-------ND- 236 (413)
T ss_dssp GGGSC---SSH-----HHHHHHHTTSC-CSCEEEEEESHHHHHHHHHHTCCCSEEEEECCCCCHHHHTTT-------TS-
T ss_pred hhcCc---cCh-----HHHHHHHHhcc-CCceEEEEcCHHHHHHHHHcCCCCCceEEeCCCcCchhhccc-------cc-
Confidence 43211 111 01112222222 33 68999988877422 12233356665543321 11
Q ss_pred CCCcccEEEEEEee-cccCCHHHHHHHHHHHHHhcCC---cEEEEEeCCCChHHHHHHHHHcCC--eEEEeCCC--CChH
Q 010098 225 NKAFTKGAYYIGRM-VWSKGYEELLGLLNIYHKELAG---LEMDLYGNGEDFDQIQRAAKKLKL--VVRVYPGR--DHAD 296 (518)
Q Consensus 225 ~~~~~~~il~vGr~-~~~Kg~~~ll~a~~~l~~~~~~---~~l~ivG~g~~~~~l~~~~~~~~l--~v~~~~~~--~~~~ 296 (518)
..+..+.++++||+ .++||++.+++|+.++.++.|+ ++|+++|+|+... ++++ ++++.|.. +++.
T Consensus 237 ~~~~~~~il~~gr~~~~~Kg~~~li~A~~~l~~~~~~~~~~~l~ivG~~~~~~-------~l~~~~~v~f~G~~~~~~l~ 309 (413)
T 2x0d_A 237 KRQKEKIILVYGRPSVKRNAFTLIVEALKIFVQKYDRSNEWKIISVGEKHKDI-------ALGKGIHLNSLGKLTLEDYA 309 (413)
T ss_dssp CCCCCSEEEEEECTTCGGGCHHHHHHHHHHHHHHCTTGGGCEEEEEESCCCCE-------EEETTEEEEEEESCCHHHHH
T ss_pred ccCCCCEEEEEecCchhccCHHHHHHHHHHHHHhCCCCCceEEEEEcCCchhh-------hcCCcCcEEEcCCCCHHHHH
Confidence 12235678899996 6899999999999999888775 8999999987642 2333 46677764 4666
Q ss_pred HHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCCccccccCCcEEeeC--CHHHHHHHHHHHHhCCCCCCChHHH
Q 010098 297 PIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYD--GRNGFVEATLKALAEEPAQPTDAQT 374 (518)
Q Consensus 297 ~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~~l~~~~~ 374 (518)
++|+.||+||+||..|+||++++||||||+|||+++.|..|++.++.+|++++ |+++++++|.++++|++.... +++
T Consensus 310 ~~~~~adv~v~pS~~E~~g~~~lEAmA~G~PVV~~~~g~~e~v~~~~~G~lv~~~d~~~la~ai~~ll~~~~~~~~-~~~ 388 (413)
T 2x0d_A 310 DLLKRSSIGISLMISPHPSYPPLEMAHFGLRVITNKYENKDLSNWHSNIVSLEQLNPENIAETLVELCMSFNNRDV-DKK 388 (413)
T ss_dssp HHHHHCCEEECCCSSSSCCSHHHHHHHTTCEEEEECBTTBCGGGTBTTEEEESSCSHHHHHHHHHHHHHHTC--------
T ss_pred HHHHhCCEEEEecCCCCCCcHHHHHHhCCCcEEEeCCCcchhhhcCCCEEEeCCCCHHHHHHHHHHHHcCHHHHHH-hHH
Confidence 99999999999999999999999999999999996655589999999999874 999999999999999886322 444
Q ss_pred ---hcCCHHHHHHHHHHHHH
Q 010098 375 ---HQLSWESATERFLQVAE 391 (518)
Q Consensus 375 ---~~~sw~~~~~~~~~~y~ 391 (518)
++|||++.+++ .+.|+
T Consensus 389 ~~~~~~~W~~~~~~-~~~~~ 407 (413)
T 2x0d_A 389 ESSNMMFYINEFNE-FSFIK 407 (413)
T ss_dssp CCBSCGGGCCCC----TTHH
T ss_pred HHHHhCCHHHHHHH-HHHHH
Confidence 78999999877 45554
No 16
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.96 E-value=9.7e-29 Score=249.44 Aligned_cols=334 Identities=13% Similarity=0.061 Sum_probs=216.6
Q ss_pred CCccccEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCC-CCcccCChhHHHHHHHHhhhc
Q 010098 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYP-GNITFASPKEQEAYVRWWLED 79 (518)
Q Consensus 1 M~~~~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~ 79 (518)
|++.+|||++++.. .+|.......+++.|.++| |+|+++++.... .....+ .++.+ .
T Consensus 2 M~~m~mkIl~~~~~----~gG~~~~~~~la~~L~~~G-~~V~v~~~~~~~--~~~~~~~~g~~~---------------~ 59 (364)
T 1f0k_A 2 MSGQGKRLMVMAGG----TGGHVFPGLAVAHHLMAQG-WQVRWLGTADRM--EADLVPKHGIEI---------------D 59 (364)
T ss_dssp -----CEEEEECCS----SHHHHHHHHHHHHHHHTTT-CEEEEEECTTST--HHHHGGGGTCEE---------------E
T ss_pred CCCCCcEEEEEeCC----CccchhHHHHHHHHHHHcC-CEEEEEecCCcc--hhhhccccCCce---------------E
Confidence 45434899999732 2465555678999999998 999999872210 000000 00000 0
Q ss_pred ccCCCCCCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhh
Q 010098 80 RTGFTSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVK 158 (518)
Q Consensus 80 ~~~~~~~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~ 158 (518)
.+.. ..+.-......+............+.+.+++.+||+||++.+... +. +...++..+ |++.+.|+.++..
T Consensus 60 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvv~~~~~~~~-~~--~~~~~~~~~~p~v~~~~~~~~~~-- 133 (364)
T 1f0k_A 60 FIRI-SGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGYVS-GP--GGLAAWSLGIPVVLHEQNGIAGL-- 133 (364)
T ss_dssp ECCC-CCCTTCCHHHHHTCHHHHHHHHHHHHHHHHHHCCSEEEECSSTTH-HH--HHHHHHHTTCCEEEEECSSSCCH--
T ss_pred EecC-CccCcCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcCc-hH--HHHHHHHcCCCEEEEecCCCCcH--
Confidence 0000 000000000000000011112445677788889999999976533 11 223444445 8898888654221
Q ss_pred hhcchHHHHHHHHHHHHHHhhhhccEEEEeChhhhccCCCceecccccCCCCcCcchhhHHHhhcCCCCcccE-EEEEEe
Q 010098 159 REKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKG-AYYIGR 237 (518)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~-il~vGr 237 (518)
..+++.+. +|.+++.++.. ++ +.....+|++...+.+... +...+.+++.+. +++.|+
T Consensus 134 --------------~~~~~~~~-~d~v~~~~~~~--~~-~~~~i~n~v~~~~~~~~~~---~~~~~~~~~~~~il~~~g~ 192 (364)
T 1f0k_A 134 --------------TNKWLAKI-ATKVMQAFPGA--FP-NAEVVGNPVRTDVLALPLP---QQRLAGREGPVRVLVVGGS 192 (364)
T ss_dssp --------------HHHHHTTT-CSEEEESSTTS--SS-SCEECCCCCCHHHHTSCCH---HHHHTTCCSSEEEEEECTT
T ss_pred --------------HHHHHHHh-CCEEEecChhh--cC-CceEeCCccchhhcccchh---hhhcccCCCCcEEEEEcCc
Confidence 12344443 89999988654 33 3344556888766544221 223344444554 455568
Q ss_pred ecccCCHHHHHHHHHHHHHhcCCcE-EEEEeCCCChHHHHHHHHHcCC-eEEEeCCCCChHHHHhhcCeeEecCCCCCCc
Q 010098 238 MVWSKGYEELLGLLNIYHKELAGLE-MDLYGNGEDFDQIQRAAKKLKL-VVRVYPGRDHADPIFHDYKVFLNPSTTDVVC 315 (518)
Q Consensus 238 ~~~~Kg~~~ll~a~~~l~~~~~~~~-l~ivG~g~~~~~l~~~~~~~~l-~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~ 315 (518)
+.+.||.+.+++++.++.+ +++ ++++|+|+ .+++++.++++++ ++.+.|..++..++|+.||++|+||. |
T Consensus 193 ~~~~k~~~~li~a~~~l~~---~~~~l~i~G~~~-~~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~sg----~ 264 (364)
T 1f0k_A 193 QGARILNQTMPQVAAKLGD---SVTIWHQSGKGS-QQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSG----A 264 (364)
T ss_dssp TCCHHHHHHHHHHHHHHGG---GEEEEEECCTTC-HHHHHHHHHHTTCTTSEEESCCSCHHHHHHHCSEEEECCC----H
T ss_pred hHhHHHHHHHHHHHHHhcC---CcEEEEEcCCch-HHHHHHHHhhcCCCceEEecchhhHHHHHHhCCEEEECCc----h
Confidence 9999999999999998864 577 56788877 5788888888875 57888888899999999999999983 9
Q ss_pred hHHHHHHHcCCeEEeeCCCC-c--------cccccCCcEEeeC--C--HHHHHHHHHHHHhCCCC--CCChHHH---hcC
Q 010098 316 TATAEALAMGKIVVCANHPS-N--------DFFKQFPNCRTYD--G--RNGFVEATLKALAEEPA--QPTDAQT---HQL 377 (518)
Q Consensus 316 ~~~lEAma~G~PVV~t~~g~-~--------e~i~~~~~g~~~~--d--~~~l~~~i~~ll~~~~~--~l~~~~~---~~~ 377 (518)
++++|||+||+|||+++.++ . +++.++ .|++++ | +++++++|.++ |++. +|+++++ +.|
T Consensus 265 ~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~g-~g~~~~~~d~~~~~la~~i~~l--~~~~~~~~~~~~~~~~~~~ 341 (364)
T 1f0k_A 265 LTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAG-AAKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAASIPD 341 (364)
T ss_dssp HHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTT-SEEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhCC-cEEEeccccCCHHHHHHHHHhc--CHHHHHHHHHHHHHhhccC
Confidence 99999999999999999986 3 355555 488874 5 89999999998 6554 7777777 789
Q ss_pred CHHHHHHHHHHHHHhcC
Q 010098 378 SWESATERFLQVAELVG 394 (518)
Q Consensus 378 sw~~~~~~~~~~y~~~~ 394 (518)
+|+.+++++++.|+...
T Consensus 342 ~~~~~~~~~~~~y~~~~ 358 (364)
T 1f0k_A 342 ATERVANEVSRVARALE 358 (364)
T ss_dssp HHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999543
No 17
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.95 E-value=4.1e-28 Score=248.64 Aligned_cols=239 Identities=17% Similarity=0.180 Sum_probs=171.2
Q ss_pred CCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChh-hhhhhhcchHHHHHHHHHHHHHHhhhhccEEEEeChhhhc
Q 010098 117 EADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYL-EYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQE 194 (518)
Q Consensus 117 ~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~ 194 (518)
++|+||....... .+ ..+++..+ |++.++|.... .... .. .......+...+. ||.++++|+..++
T Consensus 124 ~~DvIh~~~~~~~-~~---~~~~~~~~~p~v~~~h~~~~~~~~~---~~----~~~~~~~~~~~~~-ad~vi~~S~~~~~ 191 (406)
T 2hy7_A 124 ESDVIVFESGIAV-AF---IELAKRVNPAAKLVYRASDGLSTIN---VA----SYIEREFDRVAPT-LDVIALVSPAMAA 191 (406)
T ss_dssp HCSEEEEESSGGG-GG---HHHHHHHCTTSEEEEEESSCHHHHT---CC----HHHHHHHHHHGGG-CSEEEESCGGGGG
T ss_pred CCCEEEECCchHH-HH---HHHHHHhCCCEEEEEeccchhhccc---cc----HHHHHHHHHHHHh-CCEEEEcCHHHHH
Confidence 5899994332221 11 12444445 88999996432 1111 11 1122223333333 7999999998888
Q ss_pred cCC---CceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 010098 195 YPN---SIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED 271 (518)
Q Consensus 195 ~~~---~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~ 271 (518)
... +..+..+|+|.+.|.+.... ..+..+.++|+|++.+.||+ +..+.+..|+++|+|+|+|+
T Consensus 192 ~~~~~~~i~vipngvd~~~f~~~~~~-------~~~~~~~i~~vGrl~~~Kg~------~~~l~~~~~~~~l~ivG~g~- 257 (406)
T 2hy7_A 192 EVVSRDNVFHVGHGVDHNLDQLGDPS-------PYAEGIHAVAVGSMLFDPEF------FVVASKAFPQVTFHVIGSGM- 257 (406)
T ss_dssp GCSCSTTEEECCCCBCTTHHHHHCSC-------SCCSSEEEEEECCTTBCHHH------HHHHHHHCTTEEEEEESCSS-
T ss_pred HHHhcCCEEEEcCCcChHhcCccccc-------ccCCCcEEEEEeccccccCH------HHHHHHhCCCeEEEEEeCch-
Confidence 543 33455579998776532111 11223789999999999999 44445567899999999987
Q ss_pred hHHHHHHHHHcCC--eEEEeCCCC--ChHHHHhhcCeeEecCCCCCCchHHHHHH-------HcCCeEEeeCCCCccccc
Q 010098 272 FDQIQRAAKKLKL--VVRVYPGRD--HADPIFHDYKVFLNPSTTDVVCTATAEAL-------AMGKIVVCANHPSNDFFK 340 (518)
Q Consensus 272 ~~~l~~~~~~~~l--~v~~~~~~~--~~~~l~~~adv~v~pS~~E~~~~~~lEAm-------a~G~PVV~t~~g~~e~i~ 340 (518)
++++++ ++++.|..+ ++.++|+.||++|+||..|+||++++||| |||+|||+|+. +.
T Consensus 258 -------~~~~~l~~~V~f~G~~~~~~l~~~~~~adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~-----v~ 325 (406)
T 2hy7_A 258 -------GRHPGYGDNVIVYGEMKHAQTIGYIKHARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA-----VV 325 (406)
T ss_dssp -------CCCTTCCTTEEEECCCCHHHHHHHHHTCSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG-----GT
T ss_pred -------HHhcCCCCCEEEcCCCCHHHHHHHHHhcCEEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh-----cc
Confidence 344444 478888664 56699999999999999999999999999 99999999987 66
Q ss_pred cCCcEEe-e--CCHHHHHHHHHHHHhCCCCCCChHHHhcCCHHHHHHHHHHH--HHhcCCcc
Q 010098 341 QFPNCRT-Y--DGRNGFVEATLKALAEEPAQPTDAQTHQLSWESATERFLQV--AELVGDVV 397 (518)
Q Consensus 341 ~~~~g~~-~--~d~~~l~~~i~~ll~~~~~~l~~~~~~~~sw~~~~~~~~~~--y~~~~~~~ 397 (518)
++.+|++ + +|+++++++|.++++|++. ...++|||+..+++++++ |+.....+
T Consensus 326 ~~~~G~l~v~~~d~~~la~ai~~ll~~~~~----~~~~~~sw~~~a~~~~~~~~y~~~~~~~ 383 (406)
T 2hy7_A 326 GPYKSRFGYTPGNADSVIAAITQALEAPRV----RYRQCLNWSDTTDRVLDPRAYPETRLYP 383 (406)
T ss_dssp CSCSSEEEECTTCHHHHHHHHHHHHHCCCC----CCSCCCBHHHHHHHHHCGGGSGGGBSSC
T ss_pred cCcceEEEeCCCCHHHHHHHHHHHHhCcch----hhhhcCCHHHHHHHHHHhhcccccCcCC
Confidence 7788888 6 4999999999999999872 223789999999999999 98766433
No 18
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.95 E-value=5.6e-28 Score=258.77 Aligned_cols=325 Identities=10% Similarity=0.007 Sum_probs=224.9
Q ss_pred cccEEEEEeeccCCcccccccchHHHHHH--HHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhccc
Q 010098 4 KQQHIAIFTTASLPWLTGTAVNPLFRAAY--LAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRT 81 (518)
Q Consensus 4 ~~~rI~ivt~~~~P~~~G~~~~~~~~a~~--L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 81 (518)
++|||+++++.+.+ +|++..+..+++. +.+.| |+|+++++... .. .... ..+... .
T Consensus 204 ~~~rI~~~~~~~~~--~g~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~---------~~----~~~~--~~~~~~----~ 261 (568)
T 2vsy_A 204 GPLRVGFVSNGFGA--HPTGLLTVALFEALQRRQPD-LQMHLFATSGD---------DG----STLR--TRLAQA----S 261 (568)
T ss_dssp SCEEEEEEESCSSS--SHHHHHHHHHHHHHHHHCTT-EEEEEEESSCC---------CS----CHHH--HHHHHT----S
T ss_pred CCeEEEEECccccc--ChHHHHHHHHHhhccCCccc-EEEEEEECCCC---------Cc----cHHH--HHHHhc----C
Confidence 45899999998754 4666667778888 66666 99999987210 00 0011 111111 0
Q ss_pred CCCCCCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcCCEEEEEeCChhhhhhhhc
Q 010098 82 GFTSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREK 161 (518)
Q Consensus 82 ~~~~~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~ 161 (518)
.+ ..+ +. .....+.+.+++.+|||||.+........ ...+..+..|++.+.|.. +... .
T Consensus 262 ~~---~~~---~~---------~~~~~l~~~i~~~~~Div~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~---~ 320 (568)
T 2vsy_A 262 TL---HDV---TA---------LGHLATAKHIRHHGIDLLFDLRGWGGGGR--PEVFALRPAPVQVNWLAY-PGTS---G 320 (568)
T ss_dssp EE---EEC---TT---------CCHHHHHHHHHHTTCSEEEECSSCTTCSS--CHHHHTCCSSEEEEESSS-SSCC---C
T ss_pred eE---EEC---CC---------CCHHHHHHHHHhCCCCEEEECCCCCCcch--HHHHhcCCCceeEeeecC-Cccc---C
Confidence 00 000 00 01345778888899999998764332111 122444445888888743 1110 0
Q ss_pred chHHHHHHHHHHHHHHhhhhccEEEEeChhhhccCCCceecccccCCCCcC-cchhhHHHhhcCCCCcccEEEEEEeecc
Q 010098 162 NDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPNSIVCNVHGVNPKFLE-IGEKKMEQQQNGNKAFTKGAYYIGRMVW 240 (518)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~GVd~~~~~-~~~~~~~~~~~~~~~~~~~il~vGr~~~ 240 (518)
. ..+....+|.++++|+..+++.++..+.++.+.+.... .......+...+.+++ .+++++|++.+
T Consensus 321 ~------------~~~~~~~~d~~i~~s~~~~~~~~~i~~ipn~~~~~~~~~~~~~~~~r~~~~~~~~-~~v~~~g~~~~ 387 (568)
T 2vsy_A 321 A------------PWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQPSDTSRVVAEPPSRTQCGLPEQ-GVVLCCFNNSY 387 (568)
T ss_dssp C------------TTCCEEEECTTTSCTTTGGGCSSEEEECSSCSCCCCTTCCCCCCCCTGGGTCCTT-SCEEEECCCGG
T ss_pred C------------CCceEEEECCCcCCcccccCCcceeEcCCCcCCCCCCCCCCCCCCCccccCCCCC-CEEEEeCCccc
Confidence 0 00111137889999988877764433333333222110 0111122344555543 46679999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCcEEEEEe-CCCChHHHHHHHHHcCCe---EEEeCCCC--ChHHHHhhcCeeEecCCCCCC
Q 010098 241 SKGYEELLGLLNIYHKELAGLEMDLYG-NGEDFDQIQRAAKKLKLV---VRVYPGRD--HADPIFHDYKVFLNPSTTDVV 314 (518)
Q Consensus 241 ~Kg~~~ll~a~~~l~~~~~~~~l~ivG-~g~~~~~l~~~~~~~~l~---v~~~~~~~--~~~~l~~~adv~v~pS~~E~~ 314 (518)
||++.+++++.++.++.|+++|+|+| +|+..+.+++.++++|+. ++|.|..+ ++.++|+.+|+||+||.+ +|
T Consensus 388 -K~~~~li~a~~~l~~~~~~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~-~~ 465 (568)
T 2vsy_A 388 -KLNPQSMARMLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPY-NA 465 (568)
T ss_dssp -GCCHHHHHHHHHHHHHCTTCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSSS-CC
T ss_pred -cCCHHHHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCCEEeeCCCC-CC
Confidence 99999999999998889999999999 888889999999999875 77888775 667999999999999999 99
Q ss_pred chHHHHHHHcCCeEEe-------eCCC-------C-ccccccCCcEEeeCCHHHHHHHHHHHHhCCCC--CCChHHH---
Q 010098 315 CTATAEALAMGKIVVC-------ANHP-------S-NDFFKQFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQT--- 374 (518)
Q Consensus 315 ~~~~lEAma~G~PVV~-------t~~g-------~-~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~~~--~l~~~~~--- 374 (518)
|++++||||||+|||+ |+.+ | .|++.+ |+++++++|.++++|++. +|+++++
T Consensus 466 g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~--------~~~~la~~i~~l~~~~~~~~~~~~~~~~~~ 537 (568)
T 2vsy_A 466 HTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNVA--------DDAAFVAKAVALASDPAALTALHARVDVLR 537 (568)
T ss_dssp SHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBCS--------SHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCChhhhcC--------CHHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Confidence 9999999999999999 9988 7 676643 999999999999999875 7776655
Q ss_pred ---hcCCHHHHHHHHHHHHHhcC
Q 010098 375 ---HQLSWESATERFLQVAELVG 394 (518)
Q Consensus 375 ---~~~sw~~~~~~~~~~y~~~~ 394 (518)
+.|||+.+++++.++|+...
T Consensus 538 ~~~~~f~~~~~~~~~~~~y~~~~ 560 (568)
T 2vsy_A 538 RASGVFHMDGFADDFGALLQALA 560 (568)
T ss_dssp HHSSTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHHHH
Confidence 56999999999999999654
No 19
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.94 E-value=1e-26 Score=235.53 Aligned_cols=266 Identities=9% Similarity=0.011 Sum_probs=177.7
Q ss_pred hhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccE
Q 010098 106 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHK 184 (518)
Q Consensus 106 ~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 184 (518)
...+.+++++.+||+||+|.+....+. +...++..+ |++.+.|... .+... ..+.. ....+.+.+. +|.
T Consensus 84 ~~~l~~~l~~~~pDvv~~~~~~~~~~~--~~~~~~~~~ip~v~~~~~~~-~~~~~---~~~~~---~~~~~~~~~~-~d~ 153 (375)
T 3beo_A 84 LEGLDKVMKEAKPDIVLVHGDTTTTFI--ASLAAFYNQIPVGHVEAGLR-TWDKY---SPYPE---EMNRQLTGVM-ADL 153 (375)
T ss_dssp HHHHHHHHHHHCCSEEEEETTSHHHHH--HHHHHHHTTCCEEEESCCCC-CSCTT---SSTTH---HHHHHHHHHH-CSE
T ss_pred HHHHHHHHHHhCCCEEEEeCCchHHHH--HHHHHHHHCCCEEEEecccc-ccccc---CCChh---HhhhhHHhhh-hhe
Confidence 345777888889999999876444333 233444445 8886666431 11100 00001 1112223333 799
Q ss_pred EEEeChhhhccC------C-Cceecccc-cCCCCcCcch--hhHHHhhcCCCCcccEEEEEEeeccc-CCHHHHHHHHHH
Q 010098 185 VIRLSAATQEYP------N-SIVCNVHG-VNPKFLEIGE--KKMEQQQNGNKAFTKGAYYIGRMVWS-KGYEELLGLLNI 253 (518)
Q Consensus 185 vi~~S~~~~~~~------~-~~~~~~~G-Vd~~~~~~~~--~~~~~~~~~~~~~~~~il~vGr~~~~-Kg~~~ll~a~~~ 253 (518)
+++.|+..++.. . +..+..+| +|...+.+.. ....+... ++...+++++||+.+. ||++.+++|+.+
T Consensus 154 ii~~s~~~~~~~~~~g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~--~~~~~vl~~~gr~~~~~K~~~~li~a~~~ 231 (375)
T 3beo_A 154 HFSPTAKSATNLQKENKDESRIFITGNTAIDALKTTVKETYSHPVLEKL--GNNRLVLMTAHRRENLGEPMRNMFRAIKR 231 (375)
T ss_dssp EEESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHCCSSCCCHHHHTT--TTSEEEEEECCCGGGTTHHHHHHHHHHHH
T ss_pred eeCCCHHHHHHHHHcCCCcccEEEECChhHhhhhhhhhhhhhHHHHHhc--cCCCeEEEEecccccchhHHHHHHHHHHH
Confidence 999998877632 1 22333456 5654432211 11112222 2334567899999875 999999999999
Q ss_pred HHHhcCCcEEEEEeCCCChHHHHHHHHHc-C--CeEEEeCCC--CChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeE
Q 010098 254 YHKELAGLEMDLYGNGEDFDQIQRAAKKL-K--LVVRVYPGR--DHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIV 328 (518)
Q Consensus 254 l~~~~~~~~l~ivG~g~~~~~l~~~~~~~-~--l~v~~~~~~--~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PV 328 (518)
+.++.|++++++ |.|++. .+++.++++ + -++.+.+.. .+..++|+.||++|+|| |.+++|||+||+||
T Consensus 232 l~~~~~~~~~i~-~~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~~s-----g~~~lEA~a~G~Pv 304 (375)
T 3beo_A 232 LVDKHEDVQVVY-PVHMNP-VVRETANDILGDYGRIHLIEPLDVIDFHNVAARSYLMLTDS-----GGVQEEAPSLGVPV 304 (375)
T ss_dssp HHHHCTTEEEEE-ECCSCH-HHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTCSEEEECC-----HHHHHHHHHHTCCE
T ss_pred HHhhCCCeEEEE-eCCCCH-HHHHHHHHHhhccCCEEEeCCCCHHHHHHHHHhCcEEEECC-----CChHHHHHhcCCCE
Confidence 988888998654 666653 333333332 2 257776643 36679999999999999 67799999999999
Q ss_pred EeeCC-CC-ccccccCCcEEee-CCHHHHHHHHHHHHhCCCC--CCChHHH---hcCCHHHHHHHHHHHHH
Q 010098 329 VCANH-PS-NDFFKQFPNCRTY-DGRNGFVEATLKALAEEPA--QPTDAQT---HQLSWESATERFLQVAE 391 (518)
Q Consensus 329 V~t~~-g~-~e~i~~~~~g~~~-~d~~~l~~~i~~ll~~~~~--~l~~~~~---~~~sw~~~~~~~~~~y~ 391 (518)
|+++. ++ .|++.++ +|+++ .|+++++++|.++++|++. +|+++++ +.|+|+.+++.+.+.++
T Consensus 305 i~~~~~~~~~e~v~~g-~g~~v~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 374 (375)
T 3beo_A 305 LVLRDTTERPEGIEAG-TLKLAGTDEETIFSLADELLSDKEAHDKMSKASNPYGDGRASERIVEAILKHFN 374 (375)
T ss_dssp EECSSCCSCHHHHHTT-SEEECCSCHHHHHHHHHHHHHCHHHHHHHCCCCCTTCCSCHHHHHHHHHHHHTT
T ss_pred EEecCCCCCceeecCC-ceEEcCCCHHHHHHHHHHHHhChHhHhhhhhcCCCCCCCcHHHHHHHHHHHHhh
Confidence 99965 66 8888887 89987 5999999999999998865 6666555 67999999999988764
No 20
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.92 E-value=7.1e-25 Score=201.80 Aligned_cols=169 Identities=19% Similarity=0.212 Sum_probs=146.4
Q ss_pred ccccCCCCcC--cch------hhHHHhhcCCCCcccEEEEEEeec-ccCCHHHHHHHHHHHH--HhcCCcEEEEEeCCC-
Q 010098 203 VHGVNPKFLE--IGE------KKMEQQQNGNKAFTKGAYYIGRMV-WSKGYEELLGLLNIYH--KELAGLEMDLYGNGE- 270 (518)
Q Consensus 203 ~~GVd~~~~~--~~~------~~~~~~~~~~~~~~~~il~vGr~~-~~Kg~~~ll~a~~~l~--~~~~~~~l~ivG~g~- 270 (518)
++|||.+.|. +.. ....+...+.++ .++++|+|++. +.||++.+++++..+. ++.++++|+++|.++
T Consensus 3 pngvd~~~f~~~~~~~~~~~~~~~~r~~~~~~~-~~~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~~~ 81 (200)
T 2bfw_A 3 HNGIDCSFWNESYLTGSRDERKKSLLSKFGMDE-GVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDP 81 (200)
T ss_dssp --CCCTTTSSGGGSCSCHHHHHHHHHHHTTCCS-CEEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCH
T ss_pred CCccChhhccccccccchhhHHHHHHHHcCCCC-CCEEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCCCh
Confidence 5799999888 665 444556666654 45999999999 9999999999999997 777899999999988
Q ss_pred -ChHHHHHHHHHcCCeEEE-eCCCC--ChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcE
Q 010098 271 -DFDQIQRAAKKLKLVVRV-YPGRD--HADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNC 345 (518)
Q Consensus 271 -~~~~l~~~~~~~~l~v~~-~~~~~--~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g 345 (518)
..+.+++++++++ .+++ .|..+ ++.++|+.||++|+||..|+||++++|||+||+|||+++.++ .+++ ++.+|
T Consensus 82 ~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~~-~~~~g 159 (200)
T 2bfw_A 82 ELEGWARSLEEKHG-NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII-TNETG 159 (200)
T ss_dssp HHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESCHHHHHHC-CTTTC
T ss_pred HHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEEeCCCChHHHc-CCCce
Confidence 7788999999998 7888 88776 677999999999999999999999999999999999999988 8888 88999
Q ss_pred EeeC--CHHHHHHHHHHHHh-CCCC--CCChHHH
Q 010098 346 RTYD--GRNGFVEATLKALA-EEPA--QPTDAQT 374 (518)
Q Consensus 346 ~~~~--d~~~l~~~i~~ll~-~~~~--~l~~~~~ 374 (518)
++++ |+++++++|.++++ |++. +|+++++
T Consensus 160 ~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~a~ 193 (200)
T 2bfw_A 160 ILVKAGDPGELANAILKALELSRSDLSKFRENCK 193 (200)
T ss_dssp EEECTTCHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9985 99999999999999 8765 6666555
No 21
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.92 E-value=6.8e-25 Score=227.91 Aligned_cols=188 Identities=14% Similarity=0.102 Sum_probs=143.5
Q ss_pred eecccccCCCCcCcch-------hhHHHhhcCCCCcccEEEEEEeecccCCHHHHHHHHHHHHHhcCC----cEEEEEeC
Q 010098 200 VCNVHGVNPKFLEIGE-------KKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAG----LEMDLYGN 268 (518)
Q Consensus 200 ~~~~~GVd~~~~~~~~-------~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~----~~l~ivG~ 268 (518)
.+.++|||++.|.+.. ....+...+ +.++|+++||+.+.||++.+++|++++.+++|+ ++|+++|.
T Consensus 222 ~vip~GID~~~f~~~~~~~~~~~~~~lr~~~~---~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~ 298 (482)
T 1uqt_A 222 EVYPIGIEPKEIAKQAAGPLPPKLAQLKAELK---NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAP 298 (482)
T ss_dssp EECCCCCCHHHHHHHHHSCCCHHHHHHHHHTT---TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECC
T ss_pred EEEeccCCHHHHHHHhcCcchHHHHHHHHHhC---CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEEC
Confidence 3445799987765321 112233333 468999999999999999999999999888775 67999986
Q ss_pred C-----CC----hHHHHHHHHHcCC--------eEEEeCC---CCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCC--
Q 010098 269 G-----ED----FDQIQRAAKKLKL--------VVRVYPG---RDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGK-- 326 (518)
Q Consensus 269 g-----~~----~~~l~~~~~~~~l--------~v~~~~~---~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~-- 326 (518)
+ ++ .+++++++.+++. .+.++++ .+++..+|+.||+||+||..||||++++||||||+
T Consensus 299 p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~ 378 (482)
T 1uqt_A 299 TSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPA 378 (482)
T ss_dssp BCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTT
T ss_pred CCccchHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHccEEEECCCcccCCchHHHHHHhCCCC
Confidence 3 21 2345555554331 2666553 34555999999999999999999999999999997
Q ss_pred ---eEEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC---CCChHHH---hcCCHHHHHHHHHHHHHhc
Q 010098 327 ---IVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA---QPTDAQT---HQLSWESATERFLQVAELV 393 (518)
Q Consensus 327 ---PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~---~l~~~~~---~~~sw~~~~~~~~~~y~~~ 393 (518)
|||+|+.+| .+.+. +|++++ |+++++++|.+++++++. ++.++++ ++|||+..++++++.|+..
T Consensus 379 ~~gpvV~S~~~G~~~~l~---~g~lv~p~d~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~~~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 379 NPGVLVLSQFAGAANELT---SALIVNPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQI 454 (482)
T ss_dssp SCCEEEEETTBGGGGTCT---TSEEECTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCHHHhC---CeEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 999999776 66662 678774 999999999999997653 5555555 6799999999999999876
No 22
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.92 E-value=3.7e-25 Score=197.47 Aligned_cols=155 Identities=14% Similarity=0.118 Sum_probs=129.7
Q ss_pred ccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCC--CChHHHHhhcCeeE
Q 010098 229 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGR--DHADPIFHDYKVFL 306 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~--~~~~~l~~~adv~v 306 (518)
.+.++|+|++.++||++.+++++.+++ +.++++|+++|+|++.+.++++++++++.+.+ +.. +++.++|+.||++|
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~-~~~~~~l~i~G~g~~~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~~adv~v 79 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSK-YKQDIVLLLKGKGPDEKKIKLLAQKLGVKAEF-GFVNSNELLEILKTCTLYV 79 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCT-TGGGEEEEEECCSTTHHHHHHHHHHHTCEEEC-CCCCHHHHHHHHTTCSEEE
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhc-cCCCeEEEEEeCCccHHHHHHHHHHcCCeEEE-eecCHHHHHHHHHhCCEEE
Confidence 468999999999999999999999985 44799999999999999999999999997777 654 45569999999999
Q ss_pred ecCCCCCCchHHHHHHHcCC-eEEee-CCCC-ccccccCCcEEeeCCHHHHHHHHHHHHhCCCC--CCChHHH---hcCC
Q 010098 307 NPSTTDVVCTATAEALAMGK-IVVCA-NHPS-NDFFKQFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQT---HQLS 378 (518)
Q Consensus 307 ~pS~~E~~~~~~lEAma~G~-PVV~t-~~g~-~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~~~--~l~~~~~---~~~s 378 (518)
+||..|+||++++|||+||+ |||++ +.++ .+++.++.+.+..+|+++++++|.++++|++. +++++++ ++||
T Consensus 80 ~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~s 159 (166)
T 3qhp_A 80 HAANVESEAIACLEAISVGIVPVIANSPLSATRQFALDERSLFEPNNAKDLSAKIDWWLENKLERERMQNEYAKSALNYT 159 (166)
T ss_dssp ECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSGGGEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHC
T ss_pred ECCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCCceEEcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999998 99995 4566 88888877754456999999999999998875 7777776 7899
Q ss_pred HHHHHHH
Q 010098 379 WESATER 385 (518)
Q Consensus 379 w~~~~~~ 385 (518)
|+.++++
T Consensus 160 ~~~~~~~ 166 (166)
T 3qhp_A 160 LENSVIQ 166 (166)
T ss_dssp -------
T ss_pred hhhhhcC
Confidence 9988764
No 23
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.91 E-value=1.4e-25 Score=227.90 Aligned_cols=272 Identities=11% Similarity=-0.006 Sum_probs=179.4
Q ss_pred hhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccE
Q 010098 106 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHK 184 (518)
Q Consensus 106 ~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 184 (518)
...+.+++++.+||+||++......+. +...++..+ |++.+.|+... +... . .+... ....++.+. +|.
T Consensus 75 ~~~l~~~l~~~~pDvv~~~~~~~~~~~--~~~~a~~~~ip~v~~~~~~~~-~~~~--~-~~~~~---~~~~~~~~~-~d~ 144 (384)
T 1vgv_A 75 LEGLKPILAEFKPDVVLVHGDTTTTLA--TSLAAFYQRIPVGHVEAGLRT-GDLY--S-PWPEE---ANRTLTGHL-AMY 144 (384)
T ss_dssp HHHHHHHHHHHCCSEEEEETTCHHHHH--HHHHHHTTTCCEEEESCCCCC-SCTT--S-STTHH---HHHHHHHTT-CSE
T ss_pred HHHHHHHHHHhCCCEEEEeCCchHHHH--HHHHHHHHCCCEEEEeccccc-cccc--C-CCchH---hhHHHHHhh-ccE
Confidence 355777888899999999976333233 233444444 88877775421 1100 0 00001 111222343 899
Q ss_pred EEEeChhhhccC------C-Cceeccccc-CCCCcCcch-------hhHHHhhcC-CCC-cccEEEEEEeeccc-CCHHH
Q 010098 185 VIRLSAATQEYP------N-SIVCNVHGV-NPKFLEIGE-------KKMEQQQNG-NKA-FTKGAYYIGRMVWS-KGYEE 246 (518)
Q Consensus 185 vi~~S~~~~~~~------~-~~~~~~~GV-d~~~~~~~~-------~~~~~~~~~-~~~-~~~~il~vGr~~~~-Kg~~~ 246 (518)
+++.|+..++.. . +..+..+|+ |...+.+.. ....+...+ .++ ...+++++||+... ||++.
T Consensus 145 ii~~s~~~~~~l~~~g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~gr~~~~~kg~~~ 224 (384)
T 1vgv_A 145 HFSPTETSRQNLLRENVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEE 224 (384)
T ss_dssp EEESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEEECCCBSSCCHHHHH
T ss_pred EEcCcHHHHHHHHHcCCChhhEEEeCChHHHHHHhhhhccccchhhhHHHHHhccccCCCCCEEEEEeCCccccchHHHH
Confidence 999998777632 1 122233443 322211110 001223333 423 34578899999876 99999
Q ss_pred HHHHHHHHHHhcCCcEEEEE-eCCC-ChHHHHHHHHHcCCeEEEeC--CCCChHHHHhhcCeeEecCCCCCCchHHHHHH
Q 010098 247 LLGLLNIYHKELAGLEMDLY-GNGE-DFDQIQRAAKKLKLVVRVYP--GRDHADPIFHDYKVFLNPSTTDVVCTATAEAL 322 (518)
Q Consensus 247 ll~a~~~l~~~~~~~~l~iv-G~g~-~~~~l~~~~~~~~l~v~~~~--~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAm 322 (518)
+++|+.++.++.|+++++++ |.++ ..+.+++++... -++.+.+ +.+++.++|+.||++|.|| |..++|||
T Consensus 225 li~a~~~l~~~~~~~~l~i~~g~~~~~~~~l~~~~~~~-~~v~~~g~~~~~~~~~~~~~ad~~v~~S-----g~~~lEA~ 298 (384)
T 1vgv_A 225 ICHALADIATTHQDIQIVYPVHLNPNVREPVNRILGHV-KNVILIDPQEYLPFVWLMNHAWLILTDS-----GGIQEEAP 298 (384)
T ss_dssp HHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHHTTC-TTEEEECCCCHHHHHHHHHHCSEEEESS-----STGGGTGG
T ss_pred HHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHHHHhhcC-CCEEEeCCCCHHHHHHHHHhCcEEEECC-----cchHHHHH
Confidence 99999999888889999886 4333 234555554322 2577755 3356779999999999999 44589999
Q ss_pred HcCCeEEeeCC-CC-ccccccCCcEEeeC-CHHHHHHHHHHHHhCCCC--CCChHHH---hcCCHHHHHHHHHHHHHhcC
Q 010098 323 AMGKIVVCANH-PS-NDFFKQFPNCRTYD-GRNGFVEATLKALAEEPA--QPTDAQT---HQLSWESATERFLQVAELVG 394 (518)
Q Consensus 323 a~G~PVV~t~~-g~-~e~i~~~~~g~~~~-d~~~l~~~i~~ll~~~~~--~l~~~~~---~~~sw~~~~~~~~~~y~~~~ 394 (518)
+||+|||+++. ++ .|++.++ +|++++ |+++++++|.++++|++. +|+++++ +.|+|+.+++.+.+.|++..
T Consensus 299 a~G~PvI~~~~~~~~~e~v~~g-~g~lv~~d~~~la~~i~~ll~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 377 (384)
T 1vgv_A 299 SLGKPVLVMRDTTERPEAVTAG-TVRLVGTDKQRIVEEVTRLLKDENEYQAMSRAHNPYGDGQACSRILEALKNNRISLG 377 (384)
T ss_dssp GGTCCEEEESSCCSCHHHHHHT-SEEEECSSHHHHHHHHHHHHHCHHHHHHHHSSCCTTCCSCHHHHHHHHHHHTCCCC-
T ss_pred HcCCCEEEccCCCCcchhhhCC-ceEEeCCCHHHHHHHHHHHHhChHHHhhhhhccCCCcCCCHHHHHHHHHHHHHHhhc
Confidence 99999999987 66 8888887 899884 999999999999998864 5555554 67999999999998887654
No 24
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.91 E-value=2.1e-23 Score=217.75 Aligned_cols=276 Identities=13% Similarity=0.077 Sum_probs=173.8
Q ss_pred CCCCCcEEEEcCCchhhhhhchHHHHhhcC--CEEEEEeCCh-hhhhhh----------hcchH-HHHH-----HHHHHH
Q 010098 114 PDEEADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNY-LEYVKR----------EKNDR-LQAF-----LLEFVN 174 (518)
Q Consensus 114 ~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~--~~v~~~h~~~-~~~~~~----------~~~~~-~~~~-----~~~~~~ 174 (518)
...+|||+|+|+...... +..++.... +.|+|+|... ..+... ...+. ..+. -...+.
T Consensus 178 ~~~~pdIiH~HDW~tg~~---~~~Lk~~~~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~~~i~~~~~~E 254 (725)
T 3nb0_A 178 DSQHAIVAHFHEWLAGVA---LPLCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIE 254 (725)
T ss_dssp CCSEEEEEEEESGGGCTH---HHHHHHTTCSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHHTTCHHHHHHH
T ss_pred CCCCCcEEEeCchhhhHH---HHHHHHhCCCCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhhhchhHHHHHH
Confidence 346699999999866521 233433332 7999999662 111000 00000 0000 001112
Q ss_pred HHHhhhhccEEEEeChhhhc----c---CCCceecccccCCCCcCcchh-----hHHHhh------------cCCCCcc-
Q 010098 175 SWLARVHCHKVIRLSAATQE----Y---PNSIVCNVHGVNPKFLEIGEK-----KMEQQQ------------NGNKAFT- 229 (518)
Q Consensus 175 ~~~~~~~ad~vi~~S~~~~~----~---~~~~~~~~~GVd~~~~~~~~~-----~~~~~~------------~~~~~~~- 229 (518)
+.... +||.|+|+|+.+++ + ... .+++||||++.|++... ...+.+ .+.+.+.
T Consensus 255 Kaga~-~AD~ITTVS~~yA~Ei~~Ll~r~~d-~iIpNGID~~~f~p~~~~~~~k~~aK~klq~~l~~~~~~~l~l~~dk~ 332 (725)
T 3nb0_A 255 RAAAH-SADVFTTVSQITAFEAEHLLKRKPD-GILPNGLNVIKFQAFHEFQNLHALKKEKINDFVRGHFHGCFDFDLDNT 332 (725)
T ss_dssp HHHHH-HSSEEEESSHHHHHHHHHHTSSCCS-EECCCCBCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTTCCCSCGGGE
T ss_pred HHHHH-hCCEEEECCHHHHHHHHHHhcCCCC-EEEcCCccccccCcchhhHHHHHHHHHHHHHHHHhhcccCCCCCCCce
Confidence 22222 59999999977766 1 223 33789999999987511 111111 1333334
Q ss_pred cEEEEEEeec-ccCCHHHHHHHHHHHHHhc-------CCcEEEEEeCCCCh-----------------------------
Q 010098 230 KGAYYIGRMV-WSKGYEELLGLLNIYHKEL-------AGLEMDLYGNGEDF----------------------------- 272 (518)
Q Consensus 230 ~~il~vGr~~-~~Kg~~~ll~a~~~l~~~~-------~~~~l~ivG~g~~~----------------------------- 272 (518)
+++..+||+. ..||++.+++|+.++.... .-+-|+++..+...
T Consensus 333 liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~ 412 (725)
T 3nb0_A 333 LYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIGKR 412 (725)
T ss_dssp EEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcchhHHHHHHHHHHHHHHHHhHH
Confidence 4455579999 6899999999999987441 12566776554210
Q ss_pred ------------------------------------------------------------HHHHHHHHHcCCe-------
Q 010098 273 ------------------------------------------------------------DQIQRAAKKLKLV------- 285 (518)
Q Consensus 273 ------------------------------------------------------------~~l~~~~~~~~l~------- 285 (518)
+.+...++++++.
T Consensus 413 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~D~Il~~~r~l~L~N~~~drV 492 (725)
T 3nb0_A 413 IFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRV 492 (725)
T ss_dssp HHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGGCHHHHHHHHHTCCCCTTCSE
T ss_pred HHHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCccHHHHHHHhcCCCCCcCCce
Confidence 1122223344432
Q ss_pred -EEEeCC---C------CChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-ccccccCC-------cEEe
Q 010098 286 -VRVYPG---R------DHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFP-------NCRT 347 (518)
Q Consensus 286 -v~~~~~---~------~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~-------~g~~ 347 (518)
+.|++. . .+..++|+.||+||+||.+|+||++++||||||+|||+|+.+| .|.+.++. +|++
T Consensus 493 KVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~gG~~d~V~dg~~~~~~~~tG~l 572 (725)
T 3nb0_A 493 KMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGSYMEDLIETNQAKDYGIY 572 (725)
T ss_dssp EEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETTBHHHHHHHTTSCHHHHHHTTEE
T ss_pred eEEEeccccCCCCccchhHHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeCCCChhhhhhccccccCCCCceEE
Confidence 334332 1 2567999999999999999999999999999999999999998 88887753 5775
Q ss_pred e-----CCHHHHHHHHHHHHh----CCC-C--CCChHHH---hcCCHHHHHHHHHHHHHhcC
Q 010098 348 Y-----DGRNGFVEATLKALA----EEP-A--QPTDAQT---HQLSWESATERFLQVAELVG 394 (518)
Q Consensus 348 ~-----~d~~~l~~~i~~ll~----~~~-~--~l~~~~~---~~~sw~~~~~~~~~~y~~~~ 394 (518)
+ .|+++++++|.+++. .++ . .++++++ +.|||++++++|+++|+.+.
T Consensus 573 V~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A~~FSWe~iA~~Yl~~Ye~aL 634 (725)
T 3nb0_A 573 IVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALSDLLDWKRMGLEYVKARQLAL 634 (725)
T ss_dssp EECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGGGGGBHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4 156666666655553 332 2 5666665 78999999999999999655
No 25
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.89 E-value=2.7e-23 Score=210.57 Aligned_cols=267 Identities=9% Similarity=-0.079 Sum_probs=169.4
Q ss_pred hhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEE
Q 010098 107 GDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKV 185 (518)
Q Consensus 107 ~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v 185 (518)
..+.+++++.+||+||+|......+. +...++..+ |++ +.|+....+..+... . .....+++.+. +|.+
T Consensus 81 ~~l~~~l~~~~pDvv~~~~~~~~~~~--~~~~a~~~~ip~v-~~~~~~~~~~~~~~~---~---~~~~~~~~~~~-~~~~ 150 (376)
T 1v4v_A 81 PQAARALKEMGADYVLVHGDTLTTFA--VAWAAFLEGIPVG-HVEAGLRSGNLKEPF---P---EEANRRLTDVL-TDLD 150 (376)
T ss_dssp HHHHHHHHHTTCSEEEEESSCHHHHH--HHHHHHHTTCCEE-EETCCCCCSCTTSST---T---HHHHHHHHHHH-CSEE
T ss_pred HHHHHHHHHcCCCEEEEeCChHHHHH--HHHHHHHhCCCEE-EEeCCCccccccCCC---c---hHHHHHHHHHH-hcee
Confidence 45777888899999999976544333 233445545 765 444333211100000 0 11122333443 8999
Q ss_pred EEeChhhhccCC------Cce-ecccc-cCCCCcCcchhhHHHhhcCCCCcccEEEEEEeecccCCHHHHHHHHHHHHHh
Q 010098 186 IRLSAATQEYPN------SIV-CNVHG-VNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKE 257 (518)
Q Consensus 186 i~~S~~~~~~~~------~~~-~~~~G-Vd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~ 257 (518)
+++|+..++... +.+ +..++ +|...+.. .....+.. .++...+++++||+...||++.+++|+.++.++
T Consensus 151 ~~~s~~~~~~l~~~g~~~~ki~vi~n~~~d~~~~~~-~~~~~~~~--~~~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~ 227 (376)
T 1v4v_A 151 FAPTPLAKANLLKEGKREEGILVTGQTGVDAVLLAA-KLGRLPEG--LPEGPYVTVTMHRRENWPLLSDLAQALKRVAEA 227 (376)
T ss_dssp EESSHHHHHHHHTTTCCGGGEEECCCHHHHHHHHHH-HHCCCCTT--CCSSCEEEECCCCGGGGGGHHHHHHHHHHHHHH
T ss_pred eCCCHHHHHHHHHcCCCcceEEEECCchHHHHhhhh-hhhHHHHh--cCCCCEEEEEeCcccchHHHHHHHHHHHHHHhh
Confidence 999987766321 112 22232 22211110 00000111 122345677899998888999999999999888
Q ss_pred cCCcEEEEE-eCCC-ChHHHHHHHHHcCCeEEEeC--CCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeC-
Q 010098 258 LAGLEMDLY-GNGE-DFDQIQRAAKKLKLVVRVYP--GRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCAN- 332 (518)
Q Consensus 258 ~~~~~l~iv-G~g~-~~~~l~~~~~~~~l~v~~~~--~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~- 332 (518)
.|+++++++ |+++ ..+.++++++.. -++.+.+ +..++.++|+.||+||.|| + |+ ++||||||+|||+++
T Consensus 228 ~~~~~lv~~~g~~~~~~~~l~~~~~~~-~~v~~~g~~g~~~~~~~~~~ad~~v~~S--~--g~-~lEA~a~G~PvI~~~~ 301 (376)
T 1v4v_A 228 FPHLTFVYPVHLNPVVREAVFPVLKGV-RNFVLLDPLEYGSMAALMRASLLLVTDS--G--GL-QEEGAALGVPVVVLRN 301 (376)
T ss_dssp CTTSEEEEECCSCHHHHHHHHHHHTTC-TTEEEECCCCHHHHHHHHHTEEEEEESC--H--HH-HHHHHHTTCCEEECSS
T ss_pred CCCeEEEEECCCCHHHHHHHHHHhccC-CCEEEECCCCHHHHHHHHHhCcEEEECC--c--CH-HHHHHHcCCCEEeccC
Confidence 889999886 6554 356666665432 2577775 3336779999999999999 2 34 889999999999985
Q ss_pred CCC-ccccccCCcEEee-CCHHHHHHHHHHHHhCCCC--CCChHHHhcCCHHHHHHHHHHHHHhcC
Q 010098 333 HPS-NDFFKQFPNCRTY-DGRNGFVEATLKALAEEPA--QPTDAQTHQLSWESATERFLQVAELVG 394 (518)
Q Consensus 333 ~g~-~e~i~~~~~g~~~-~d~~~l~~~i~~ll~~~~~--~l~~~~~~~~sw~~~~~~~~~~y~~~~ 394 (518)
.++ .+++.+ .+|+++ .|+++++++|.++++|++. +|+++ .+.|+|...++++.+.++...
T Consensus 302 ~~~~~~~~~~-g~g~lv~~d~~~la~~i~~ll~d~~~~~~~~~~-~~~~~~~~~~~~i~~~i~~~~ 365 (376)
T 1v4v_A 302 VTERPEGLKA-GILKLAGTDPEGVYRVVKGLLENPEELSRMRKA-KNPYGDGKAGLMVARGVAWRL 365 (376)
T ss_dssp SCSCHHHHHH-TSEEECCSCHHHHHHHHHHHHTCHHHHHHHHHS-CCSSCCSCHHHHHHHHHHHHT
T ss_pred CCcchhhhcC-CceEECCCCHHHHHHHHHHHHhChHhhhhhccc-CCCCCCChHHHHHHHHHHHHh
Confidence 566 676655 478887 6999999999999998764 55542 256677777777777777544
No 26
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.88 E-value=2.9e-21 Score=195.38 Aligned_cols=233 Identities=9% Similarity=-0.024 Sum_probs=157.2
Q ss_pred hhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcCCEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEEE
Q 010098 107 GDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVI 186 (518)
Q Consensus 107 ~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi 186 (518)
..+.+++++.+||++|++.......+ .. ..++ |++...+... . .. +.+++.+. +|.++
T Consensus 101 ~~l~~~l~~~~pDiv~~~~~~~~~~~--~~-~~~~--p~~~~~~~~~-~------~~---------~~~~~~~~-~d~ii 158 (374)
T 2xci_A 101 FSVKRFEELSKPKALIVVEREFWPSL--II-FTKV--PKILVNAYAK-G------SL---------IEKILSKK-FDLII 158 (374)
T ss_dssp HHHHHHHHHHCCSEEEEESCCCCHHH--HH-HCCS--CEEEEEECCC-C------CH---------HHHHHHTT-CSEEE
T ss_pred HHHHHHHHHhCCCEEEEECccCcHHH--HH-HHhC--CEEEEEeecC-c------hH---------HHHHHHHh-CCEEE
Confidence 44777888889999998654432111 11 1122 6654433211 1 00 22233332 79999
Q ss_pred EeChhhhccCCC-----ceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEeecccCCHHHHHHHHHHHHHhcCCc
Q 010098 187 RLSAATQEYPNS-----IVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGL 261 (518)
Q Consensus 187 ~~S~~~~~~~~~-----~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~ 261 (518)
++|+..++...+ ..+..++. |++.... .. .. ..+++++.|+ +.||++.+++|+.++.++.|++
T Consensus 159 ~~S~~~~~~l~~~g~~ki~vi~n~~----f~~~~~~--~~--~l--~~~vi~~~~~--~~k~~~~ll~A~~~l~~~~p~~ 226 (374)
T 2xci_A 159 MRTQEDVEKFKTFGAKRVFSCGNLK----FICQKGK--GI--KL--KGEFIVAGSI--HTGEVEIILKAFKEIKKTYSSL 226 (374)
T ss_dssp ESCHHHHHHHHTTTCCSEEECCCGG----GCCCCCS--CC--CC--SSCEEEEEEE--CGGGHHHHHHHHHHHHTTCTTC
T ss_pred ECCHHHHHHHHHcCCCeEEEcCCCc----cCCCcCh--hh--hh--cCCEEEEEeC--CCchHHHHHHHHHHHHhhCCCc
Confidence 999888774321 11222221 2111100 00 11 1255666664 5789999999999999888999
Q ss_pred EEEEEeCCCCh-HHHHHHHHHcCCe----------EEEeCCCCChHHHHhhcCeeEecCC-CCCCchHHHHHHHcCCeEE
Q 010098 262 EMDLYGNGEDF-DQIQRAAKKLKLV----------VRVYPGRDHADPIFHDYKVFLNPST-TDVVCTATAEALAMGKIVV 329 (518)
Q Consensus 262 ~l~ivG~g~~~-~~l~~~~~~~~l~----------v~~~~~~~~~~~l~~~adv~v~pS~-~E~~~~~~lEAma~G~PVV 329 (518)
+|+|+|+|+++ ++++++++++++. +.+.+..+++.++|+.||++++||. .|++|++++||||||+|||
T Consensus 227 ~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~G~PVI 306 (374)
T 2xci_A 227 KLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVI 306 (374)
T ss_dssp EEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGGGEEEEEECSSSSSSCCCCCHHHHTTTCCEE
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHHhCCEEEECCcccCCCCcCHHHHHHhCCCEE
Confidence 99999999876 6899999998875 3334457899999999999888764 5778999999999999999
Q ss_pred ee-CCCC-cccccc---CCcEEeeCCHHHHHHHHHHHHhCCCC--CCChHHH
Q 010098 330 CA-NHPS-NDFFKQ---FPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQT 374 (518)
Q Consensus 330 ~t-~~g~-~e~i~~---~~~g~~~~d~~~l~~~i~~ll~~~~~--~l~~~~~ 374 (518)
++ +.++ .|++.+ ...++.++|+++++++|.++++| +. +|+++++
T Consensus 307 ~~~~~~~~~e~~~~~~~~G~l~~~~d~~~La~ai~~ll~d-~~r~~mg~~ar 357 (374)
T 2xci_A 307 YGPYTHKVNDLKEFLEKEGAGFEVKNETELVTKLTELLSV-KKEIKVEEKSR 357 (374)
T ss_dssp ECSCCTTSHHHHHHHHHTTCEEECCSHHHHHHHHHHHHHS-CCCCCHHHHHH
T ss_pred ECCCccChHHHHHHHHHCCCEEEeCCHHHHHHHHHHHHhH-HHHHHHHHHHH
Confidence 86 5565 776654 23334457999999999999998 75 8888877
No 27
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.88 E-value=2.2e-22 Score=181.60 Aligned_cols=141 Identities=16% Similarity=0.077 Sum_probs=125.6
Q ss_pred cCCCCcccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHH--HcCC--eEEEeCCCCC--hH
Q 010098 223 NGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAK--KLKL--VVRVYPGRDH--AD 296 (518)
Q Consensus 223 ~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~--~~~l--~v~~~~~~~~--~~ 296 (518)
...+.+.++++|+|++.+.||++.+++++.++ ++++|+++|.|++.+.++++++ ++++ ++.+.|..++ +.
T Consensus 17 ~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l----~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~ 92 (177)
T 2f9f_A 17 FKFKCYGDFWLSVNRIYPEKRIELQLEVFKKL----QDEKLYIVGWFSKGDHAERYARKIMKIAPDNVKFLGSVSEEELI 92 (177)
T ss_dssp CCCCCCCSCEEEECCSSGGGTHHHHHHHHHHC----TTSCEEEEBCCCTTSTHHHHHHHHHHHSCTTEEEEESCCHHHHH
T ss_pred cccCCCCCEEEEEeccccccCHHHHHHHHHhC----CCcEEEEEecCccHHHHHHHHHhhhcccCCcEEEeCCCCHHHHH
Confidence 44456678999999999999999999999776 6899999999998888888888 6555 4778887766 67
Q ss_pred HHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-ccccccCCcEEee-CCHHHHHHHHHHHHhCCCC
Q 010098 297 PIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTY-DGRNGFVEATLKALAEEPA 367 (518)
Q Consensus 297 ~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~~~g~~~-~d~~~l~~~i~~ll~~~~~ 367 (518)
++|+.||++|+||..|++|++++|||+||+|||+++.++ .|++.++.+|+++ +|+++++++|.++++|++.
T Consensus 93 ~~~~~adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~d~~~l~~~i~~l~~~~~~ 165 (177)
T 2f9f_A 93 DLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLVNADVNEIIDAMKKVSKNPDK 165 (177)
T ss_dssp HHHHHCSEEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEECSCHHHHHHHHHHHHHCTTT
T ss_pred HHHHhCCEEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEeCCCHHHHHHHHHHHHhCHHH
Confidence 999999999999999999999999999999999999987 9999999999987 7999999999999998873
No 28
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.87 E-value=4.4e-21 Score=197.10 Aligned_cols=264 Identities=13% Similarity=0.050 Sum_probs=181.2
Q ss_pred CCCcEEEEcCCchhhhhhchHHHHhhcC--CEEEEEeCChhhhhhhhcchH-HHHHHHHHHHHHHhhhhccEEEEeChhh
Q 010098 116 EEADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLEYVKREKNDR-LQAFLLEFVNSWLARVHCHKVIRLSAAT 192 (518)
Q Consensus 116 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~--~~v~~~h~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ad~vi~~S~~~ 192 (518)
..-|+|.+|+...+ .+ ...+.++.. ++.+..|+.++...-...... +...+ .+-+. .||.|.+.+...
T Consensus 148 ~~~D~VwVhDYhL~-ll--p~~lR~~~~~~~igfFlHiPfPs~e~f~~Lp~~~r~el----l~gll--~~DligF~t~~y 218 (496)
T 3t5t_A 148 SADPVYLVHDYQLV-GV--PALLREQRPDAPILLFVHIPWPSADYWRILPKEIRTGI----LHGML--PATTIGFFADRW 218 (496)
T ss_dssp CSSCEEEEESGGGT-TH--HHHHHHHCTTSCEEEECCSCCCCHHHHTTSCHHHHHHH----HHHHT--TSSEEEESSHHH
T ss_pred CCCCEEEEeCccHh-HH--HHHHHhhCCCCeEEEEEcCCCCCHHHHhhCcHhHHHHH----HHHHH--hCCEEEEecHHH
Confidence 35789999998766 22 344555433 788999998876543222221 12222 22222 369999988544
Q ss_pred hc--------cC-C-----------------CceecccccCCCCcCcchh---hHHHhhcCCCCcccEEEEEEeecccCC
Q 010098 193 QE--------YP-N-----------------SIVCNVHGVNPKFLEIGEK---KMEQQQNGNKAFTKGAYYIGRMVWSKG 243 (518)
Q Consensus 193 ~~--------~~-~-----------------~~~~~~~GVd~~~~~~~~~---~~~~~~~~~~~~~~~il~vGr~~~~Kg 243 (518)
.+ +. . +..+.++|||++.|.+... ...+...+ +.++|+++||+++.||
T Consensus 219 ~~~Fl~~~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~~~~~lr~~~~---~~~lIl~VgRLd~~KG 295 (496)
T 3t5t_A 219 CRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQLPEGIEEWAD---GHRLVVHSGRTDPIKN 295 (496)
T ss_dssp HHHHHHHHHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CCCCTTHHHHHT---TSEEEEEEEESSGGGC
T ss_pred HHHHHHHHHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHHHHHHHHHHhC---CceEEEEcccCccccC
Confidence 33 11 1 1123346999988765432 22233333 3789999999999999
Q ss_pred HHHHHHHHHHHHHhcCC---cEEEEEeC-----CCCh----HHHHHHHHHcCC-----eEEEeCCC--CChHHHHhhcCe
Q 010098 244 YEELLGLLNIYHKELAG---LEMDLYGN-----GEDF----DQIQRAAKKLKL-----VVRVYPGR--DHADPIFHDYKV 304 (518)
Q Consensus 244 ~~~ll~a~~~l~~~~~~---~~l~ivG~-----g~~~----~~l~~~~~~~~l-----~v~~~~~~--~~~~~l~~~adv 304 (518)
++.+++|+ ++.+++|+ +.|+++|. +++. +++++++.+.+. .+.+++.. ++...+|+.||+
T Consensus 296 i~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~~V~f~g~v~~~el~aly~~ADv 374 (496)
T 3t5t_A 296 AERAVRAF-VLAARGGGLEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTVRIDNDNDVNHTIACFRRADL 374 (496)
T ss_dssp HHHHHHHH-HHHHHTSSCTTEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECCCHHHHHHHHHHCSE
T ss_pred HHHHHHHH-HHHHhCcccceEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCcCEEEeCCCCHHHHHHHHHhccE
Confidence 99999999 98888886 46888864 2222 344555554432 47777653 345599999999
Q ss_pred eEecCCCCCCchHHHHHHHcC---CeEEeeCCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC---CCChHHH-
Q 010098 305 FLNPSTTDVVCTATAEALAMG---KIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA---QPTDAQT- 374 (518)
Q Consensus 305 ~v~pS~~E~~~~~~lEAma~G---~PVV~t~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~---~l~~~~~- 374 (518)
|++||..||||++.+|||||| .|+|+|+.+| .+.+. .+|++++ |+++++++|.++++++.. .+.++.+
T Consensus 375 ~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aGa~~~l~--~~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~ 452 (496)
T 3t5t_A 375 LIFNSTVDGQNLSTFEAPLVNERDADVILSETCGAAEVLG--EYCRSVNPFDLVEQAEAISAALAAGPRQRAEAAARRRD 452 (496)
T ss_dssp EEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBTTHHHHG--GGSEEECTTBHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred EEECcccccCChhHHHHHHhCCCCCCEEEeCCCCCHHHhC--CCEEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999997 8999999876 66663 3678874 999999999999998864 3333333
Q ss_pred --hcCCHHHHHHHHHHHHHhcC
Q 010098 375 --HQLSWESATERFLQVAELVG 394 (518)
Q Consensus 375 --~~~sw~~~~~~~~~~y~~~~ 394 (518)
..++++.-++.+++..+...
T Consensus 453 ~V~~~d~~~W~~~fl~~L~~~~ 474 (496)
T 3t5t_A 453 AARPWTLEAWVQAQLDGLAADH 474 (496)
T ss_dssp HHTTCBHHHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHhhcc
Confidence 78999999999998887553
No 29
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.80 E-value=3.4e-19 Score=182.52 Aligned_cols=261 Identities=11% Similarity=-0.023 Sum_probs=165.0
Q ss_pred hhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhh------
Q 010098 107 GDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLAR------ 179 (518)
Q Consensus 107 ~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 179 (518)
..+.+++++.+||+||++..... +...+++.+ |+|.+.|+..... .....+.+.+.++..+
T Consensus 120 ~~l~~~l~~~~pDvVv~~~~~~~-----~~~aa~~~giP~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~ 187 (412)
T 3otg_A 120 DELQPVIERLRPDLVVQEISNYG-----AGLAALKAGIPTICHGVGRDTPD-------DLTRSIEEEVRGLAQRLGLDLP 187 (412)
T ss_dssp HHHHHHHHHHCCSEEEEETTCHH-----HHHHHHHHTCCEEEECCSCCCCS-------HHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHhcCCCEEEECchhhH-----HHHHHHHcCCCEEEecccccCch-------hhhHHHHHHHHHHHHHcCCCCC
Confidence 55777788889999988854433 223455555 8888877543210 1112233333333333
Q ss_pred -----hhccEEEEeChhhhccCCCceecccccCCCCcCcchhhHHHhh--cCCCCcccEEEEEEeecccCCHHHHHHHHH
Q 010098 180 -----VHCHKVIRLSAATQEYPNSIVCNVHGVNPKFLEIGEKKMEQQQ--NGNKAFTKGAYYIGRMVWSKGYEELLGLLN 252 (518)
Q Consensus 180 -----~~ad~vi~~S~~~~~~~~~~~~~~~GVd~~~~~~~~~~~~~~~--~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~ 252 (518)
..+|.+++.++...+....... ..|....+............ ...++...++++.|++. .++.+.+.+++.
T Consensus 188 ~~~~~~~~d~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~G~~~-~~~~~~~~~~~~ 265 (412)
T 3otg_A 188 PGRIDGFGNPFIDIFPPSLQEPEFRAR-PRRHELRPVPFAEQGDLPAWLSSRDTARPLVYLTLGTSS-GGTVEVLRAAID 265 (412)
T ss_dssp SSCCGGGGCCEEECSCGGGSCHHHHTC-TTEEECCCCCCCCCCCCCGGGGGSCTTSCEEEEECTTTT-CSCHHHHHHHHH
T ss_pred cccccCCCCeEEeeCCHHhcCCcccCC-CCcceeeccCCCCCCCCCCccccccCCCCEEEEEcCCCC-cCcHHHHHHHHH
Confidence 1368889888666554321110 11111111100000000001 11123345667788886 778888888887
Q ss_pred HHHHhcCCcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEee
Q 010098 253 IYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCA 331 (518)
Q Consensus 253 ~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t 331 (518)
.+.+. +.++++++++.. .+.++. +.-++.+.+.. +..++|+.||++|.++ .+++++|||++|+|+|++
T Consensus 266 ~l~~~--~~~~~~~~g~~~~~~~l~~----~~~~v~~~~~~-~~~~~l~~ad~~v~~~----g~~t~~Ea~a~G~P~v~~ 334 (412)
T 3otg_A 266 GLAGL--DADVLVASGPSLDVSGLGE----VPANVRLESWV-PQAALLPHVDLVVHHG----GSGTTLGALGAGVPQLSF 334 (412)
T ss_dssp HHHTS--SSEEEEECCSSCCCTTCCC----CCTTEEEESCC-CHHHHGGGCSEEEESC----CHHHHHHHHHHTCCEEEC
T ss_pred HHHcC--CCEEEEEECCCCChhhhcc----CCCcEEEeCCC-CHHHHHhcCcEEEECC----chHHHHHHHHhCCCEEec
Confidence 77644 577777665443 333332 23357777776 7889999999999765 358999999999999998
Q ss_pred CCCC-----ccccccCCcEEeeC----CHHHHHHHHHHHHhCCCC--CCChHHH---hcCCHHHHHHHHHHHHHh
Q 010098 332 NHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEPA--QPTDAQT---HQLSWESATERFLQVAEL 392 (518)
Q Consensus 332 ~~g~-----~e~i~~~~~g~~~~----d~~~l~~~i~~ll~~~~~--~l~~~~~---~~~sw~~~~~~~~~~y~~ 392 (518)
+.++ .+.+.+..+|++++ |+++++++|.++++|++. +|++.++ ..++|+.+++.+.++++.
T Consensus 335 p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 335 PWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEESYRAGARAVAAEIAAMPGPDEVVRLLPGFASR 409 (412)
T ss_dssp CCSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSCCHHHHHTTHHHHHC-
T ss_pred CCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 7653 56777778888863 899999999999999875 6666555 778999999999988853
No 30
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.76 E-value=1.4e-17 Score=167.83 Aligned_cols=239 Identities=10% Similarity=-0.033 Sum_probs=152.0
Q ss_pred hhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccE
Q 010098 106 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHK 184 (518)
Q Consensus 106 ~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 184 (518)
+....+++++.+||+|+++....... +...++..+ |++..-....+ + ..++++.+. ++.
T Consensus 81 ~~~~~~~l~~~~PDvVi~~g~~~s~p---~~laA~~~~iP~vihe~n~~~--------G--------~~nr~l~~~-a~~ 140 (365)
T 3s2u_A 81 LFQALRVIRQLRPVCVLGLGGYVTGP---GGLAARLNGVPLVIHEQNAVA--------G--------TANRSLAPI-ARR 140 (365)
T ss_dssp HHHHHHHHHHHCCSEEEECSSSTHHH---HHHHHHHTTCCEEEEECSSSC--------C--------HHHHHHGGG-CSE
T ss_pred HHHHHHHHHhcCCCEEEEcCCcchHH---HHHHHHHcCCCEEEEecchhh--------h--------hHHHhhccc-cce
Confidence 34566778899999999987654411 122334444 76632221121 1 124455565 888
Q ss_pred EEEeChhhhccCCCceecccccCCCCcCcchhhHHHhhcCCCCcccEEE-EEEeecccCCHHHHHHHHHHHHHhcCCcEE
Q 010098 185 VIRLSAATQEYPNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAY-YIGRMVWSKGYEELLGLLNIYHKELAGLEM 263 (518)
Q Consensus 185 vi~~S~~~~~~~~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il-~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l 263 (518)
+++..+.......+.....+.+...++... ....+.+++.+.++ +.|+....+..+.+.+++..+.... ++.+
T Consensus 141 v~~~~~~~~~~~~k~~~~g~pvr~~~~~~~-----~~~~~~~~~~~~ilv~gGs~g~~~~~~~~~~al~~l~~~~-~~~v 214 (365)
T 3s2u_A 141 VCEAFPDTFPASDKRLTTGNPVRGELFLDA-----HARAPLTGRRVNLLVLGGSLGAEPLNKLLPEALAQVPLEI-RPAI 214 (365)
T ss_dssp EEESSTTSSCC---CEECCCCCCGGGCCCT-----TSSCCCTTSCCEEEECCTTTTCSHHHHHHHHHHHTSCTTT-CCEE
T ss_pred eeecccccccCcCcEEEECCCCchhhccch-----hhhcccCCCCcEEEEECCcCCccccchhhHHHHHhccccc-ceEE
Confidence 877765443333333333333444443221 11223334445544 4466666777778888887765443 4555
Q ss_pred EEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC--------
Q 010098 264 DLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-------- 335 (518)
Q Consensus 264 ~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-------- 335 (518)
+++.+..+.+.+.+..+..+.++++++..+++.++|+.||++|.-+ -++++.|+|++|+|+|..+.+.
T Consensus 215 i~~~G~~~~~~~~~~~~~~~~~~~v~~f~~dm~~~l~~aDlvI~ra----G~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~ 290 (365)
T 3s2u_A 215 RHQAGRQHAEITAERYRTVAVEADVAPFISDMAAAYAWADLVICRA----GALTVSELTAAGLPAFLVPLPHAIDDHQTR 290 (365)
T ss_dssp EEECCTTTHHHHHHHHHHTTCCCEEESCCSCHHHHHHHCSEEEECC----CHHHHHHHHHHTCCEEECC-----CCHHHH
T ss_pred EEecCccccccccceecccccccccccchhhhhhhhccceEEEecC----CcchHHHHHHhCCCeEEeccCCCCCcHHHH
Confidence 5444334567777778888888889999999999999999999543 3789999999999999877652
Q ss_pred -ccccccCCcEEeeC----CHHHHHHHHHHHHhCCCC--CCChHHH
Q 010098 336 -NDFFKQFPNCRTYD----GRNGFVEATLKALAEEPA--QPTDAQT 374 (518)
Q Consensus 336 -~e~i~~~~~g~~~~----d~~~l~~~i~~ll~~~~~--~l~~~~~ 374 (518)
.+.+.+...|++++ |+++++++|.++++|++. +|+++++
T Consensus 291 NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~~~~~m~~~a~ 336 (365)
T 3s2u_A 291 NAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQAR 336 (365)
T ss_dssp HHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCTHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 23455666677653 689999999999999986 8888877
No 31
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.74 E-value=3.8e-18 Score=173.72 Aligned_cols=340 Identities=11% Similarity=0.026 Sum_probs=190.9
Q ss_pred cEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCC
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTS 85 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (518)
|||++|+.+. |. .....-+.+.|.+.+++++.++++.. . . +........ ..+.+
T Consensus 26 ~ki~~v~Gtr-~~----~~~~a~li~~l~~~~~~~~~~~~tG~-----h-----~------~~~~~~~~~-----~~i~~ 79 (396)
T 3dzc_A 26 KKVLIVFGTR-PE----AIKMAPLVQQLCQDNRFVAKVCVTGQ-----H-----R------EMLDQVLEL-----FSITP 79 (396)
T ss_dssp EEEEEEECSH-HH----HHHHHHHHHHHHHCTTEEEEEEECCS-----S-----S------HHHHHHHHH-----TTCCC
T ss_pred CeEEEEEecc-Hh----HHHHHHHHHHHHhCCCCcEEEEEecc-----c-----H------HHHHHHHHh-----cCCCC
Confidence 6999999876 32 22334466888887558988776621 0 0 101111111 12222
Q ss_pred CCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchH
Q 010098 86 TFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDR 164 (518)
Q Consensus 86 ~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~ 164 (518)
...+...................+.+++++.+||+||++.....++. +...+++.+ |++. ++.....+..+...
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~g~~~~~~~--~~~aa~~~~IPv~h-~~ag~rs~~~~~~~-- 154 (396)
T 3dzc_A 80 DFDLNIMEPGQTLNGVTSKILLGMQQVLSSEQPDVVLVHGDTATTFA--ASLAAYYQQIPVGH-VEAGLRTGNIYSPW-- 154 (396)
T ss_dssp SEECCCCCTTCCHHHHHHHHHHHHHHHHHHHCCSEEEEETTSHHHHH--HHHHHHTTTCCEEE-ETCCCCCSCTTSST--
T ss_pred ceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEECCchhHHH--HHHHHHHhCCCEEE-EECCccccccccCC--
Confidence 22222110100001111122556788899999999999987655444 333445545 7553 32211111110000
Q ss_pred HHHHHHHHHHHHH-hhhhccEEEEeChhhhccC------CCceec-cc-ccCCCCcCcch-------hhHHHhhcC-CCC
Q 010098 165 LQAFLLEFVNSWL-ARVHCHKVIRLSAATQEYP------NSIVCN-VH-GVNPKFLEIGE-------KKMEQQQNG-NKA 227 (518)
Q Consensus 165 ~~~~~~~~~~~~~-~~~~ad~vi~~S~~~~~~~------~~~~~~-~~-GVd~~~~~~~~-------~~~~~~~~~-~~~ 227 (518)
....++.+ .+. +|.+++.|+..++.. ...+.. .+ ++|...+.+.. ....+...+ +++
T Consensus 155 -----~~~~~r~~~~~~-a~~~~~~se~~~~~l~~~G~~~~ki~vvGn~~~d~~~~~~~~~~~~~~~~~~~r~~lg~l~~ 228 (396)
T 3dzc_A 155 -----PEEGNRKLTAAL-TQYHFAPTDTSRANLLQENYNAENIFVTGNTVIDALLAVREKIHTDMDLQATLESQFPMLDA 228 (396)
T ss_dssp -----THHHHHHHHHHT-CSEEEESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHTCTTCCT
T ss_pred -----cHHHHHHHHHHh-cCEEECCCHHHHHHHHHcCCCcCcEEEECCcHHHHHHHhhhhcccchhhHHHHHHHhCccCC
Confidence 01122332 343 899999998776632 222222 22 33332221111 022234455 334
Q ss_pred cccEEE-EEEee-cccCCHHHHHHHHHHHHHhcCCcEEEEE-eCCCC-hHHHHHHHHHcCCeEEEeCCC--CChHHHHhh
Q 010098 228 FTKGAY-YIGRM-VWSKGYEELLGLLNIYHKELAGLEMDLY-GNGED-FDQIQRAAKKLKLVVRVYPGR--DHADPIFHD 301 (518)
Q Consensus 228 ~~~~il-~vGr~-~~~Kg~~~ll~a~~~l~~~~~~~~l~iv-G~g~~-~~~l~~~~~~~~l~v~~~~~~--~~~~~l~~~ 301 (518)
+.++++ +.+|. ...|+++.+++|+.++.+++|++++++. |.++. .+.+++... ..-++.+.++. .+...+|+.
T Consensus 229 ~~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~~~~~~v~~~g~~~~~~~~l~~~~~-~~~~v~~~~~lg~~~~~~l~~~ 307 (396)
T 3dzc_A 229 SKKLILVTGHRRESFGGGFERICQALITTAEQHPECQILYPVHLNPNVREPVNKLLK-GVSNIVLIEPQQYLPFVYLMDR 307 (396)
T ss_dssp TSEEEEEECSCBCCCTTHHHHHHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHTT-TCTTEEEECCCCHHHHHHHHHH
T ss_pred CCCEEEEEECCcccchhHHHHHHHHHHHHHHhCCCceEEEEeCCChHHHHHHHHHHc-CCCCEEEeCCCCHHHHHHHHHh
Confidence 345544 44454 3457899999999999888889998885 54432 233333221 12246676654 466799999
Q ss_pred cCeeEecCCCCCCchHHHHHHHcCCeEEee-CCCC-ccccccCCcEEeeC-CHHHHHHHHHHHHhCCCC--CCChHHHhc
Q 010098 302 YKVFLNPSTTDVVCTATAEALAMGKIVVCA-NHPS-NDFFKQFPNCRTYD-GRNGFVEATLKALAEEPA--QPTDAQTHQ 376 (518)
Q Consensus 302 adv~v~pS~~E~~~~~~lEAma~G~PVV~t-~~g~-~e~i~~~~~g~~~~-d~~~l~~~i~~ll~~~~~--~l~~~~~~~ 376 (518)
||++|.+| | | .++|||++|+|||++ +.++ +|.+.+|. +++++ |++++++++.++++|++. +|++++ ..
T Consensus 308 ad~vv~~S---G-g-~~~EA~a~G~PvV~~~~~~~~~e~v~~G~-~~lv~~d~~~l~~ai~~ll~d~~~~~~m~~~~-~~ 380 (396)
T 3dzc_A 308 AHIILTDS---G-G-IQEEAPSLGKPVLVMRETTERPEAVAAGT-VKLVGTNQQQICDALSLLLTDPQAYQAMSQAH-NP 380 (396)
T ss_dssp CSEEEESC---S-G-GGTTGGGGTCCEEECCSSCSCHHHHHHTS-EEECTTCHHHHHHHHHHHHHCHHHHHHHHTSC-CT
T ss_pred cCEEEECC---c-c-HHHHHHHcCCCEEEccCCCcchHHHHcCc-eEEcCCCHHHHHHHHHHHHcCHHHHHHHhhcc-CC
Confidence 99999998 3 3 348999999999999 5666 78887775 56664 899999999999998764 444332 23
Q ss_pred CCHHHHHHHHHHHH
Q 010098 377 LSWESATERFLQVA 390 (518)
Q Consensus 377 ~sw~~~~~~~~~~y 390 (518)
|.....++++.+..
T Consensus 381 ~~~~~aa~ri~~~l 394 (396)
T 3dzc_A 381 YGDGKACQRIADIL 394 (396)
T ss_dssp TCCSCHHHHHHHHH
T ss_pred CcCChHHHHHHHHH
Confidence 55555555555543
No 32
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.73 E-value=1.4e-17 Score=169.88 Aligned_cols=342 Identities=9% Similarity=0.010 Sum_probs=190.7
Q ss_pred ccEEEEEeeccCCcccccccchHHHHHHHHhcC-CeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCC
Q 010098 5 QQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDG-ERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGF 83 (518)
Q Consensus 5 ~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~g-g~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (518)
+|||++|+.+. |. ......+.+.|.+.+ ++++.++.+.. . + .... ..... ...
T Consensus 27 ~~kI~~v~Gtr-~~----~~~~a~li~~l~~~~~~~~~~~~~tG~-----h--~------~m~~---~~~~~-----~~i 80 (403)
T 3ot5_A 27 KIKVMSIFGTR-PE----AIKMAPLVLALEKEPETFESTVVITAQ-----H--R------EMLD---QVLEI-----FDI 80 (403)
T ss_dssp CEEEEEEECSH-HH----HHHHHHHHHHHHTCTTTEEEEEEECC------------------CH---HHHHH-----TTC
T ss_pred cceEEEEEecC-hh----HHHHHHHHHHHHhCCCCCcEEEEEecC-----c--H------HHHH---HHHHh-----cCC
Confidence 46999999876 32 122344668888874 58988777721 0 0 0001 11111 122
Q ss_pred CCCCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcc
Q 010098 84 TSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKN 162 (518)
Q Consensus 84 ~~~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~ 162 (518)
.+...+...................+.+++++.+||+||++......+. +...+++.+ |++ .++.....+..+...
T Consensus 81 ~~~~~l~v~~~~~~~~~~~~~~~~~l~~~l~~~kPD~Vi~~gd~~~~l~--~~laA~~~~IPv~-h~~aglrs~~~~~~~ 157 (403)
T 3ot5_A 81 KPDIDLDIMKKGQTLAEITSRVMNGINEVIAAENPDIVLVHGDTTTSFA--AGLATFYQQKMLG-HVEAGLRTWNKYSPF 157 (403)
T ss_dssp CCSEECCCCC-CCCHHHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHH--HHHHHHHTTCEEE-EESCCCCCSCTTSST
T ss_pred CCCcccccCCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEECCchhHHH--HHHHHHHhCCCEE-EEECCccccccccCC
Confidence 2222222110000000111122556788899999999999987555443 334455555 654 333211111100000
Q ss_pred hHHHHHHHHHHHHHHhhhhccEEEEeChhhhccC------CCceecc-c-ccCCCCcCcch--hhHHHhhcCCCCcccEE
Q 010098 163 DRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYP------NSIVCNV-H-GVNPKFLEIGE--KKMEQQQNGNKAFTKGA 232 (518)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~------~~~~~~~-~-GVd~~~~~~~~--~~~~~~~~~~~~~~~~i 232 (518)
. ......++.+. +|.+++.|+..++.. .+.+..+ + ++|...+.+.. ........ ++...++
T Consensus 158 ---p---~~~~r~~~~~~-a~~~~~~se~~~~~l~~~Gi~~~~i~vvGn~~~D~~~~~~~~~~~~~~~~~l--~~~~~vl 228 (403)
T 3ot5_A 158 ---P---EEMNRQLTGVM-ADIHFSPTKQAKENLLAEGKDPATIFVTGNTAIDALKTTVQKDYHHPILENL--GDNRLIL 228 (403)
T ss_dssp ---T---HHHHHHHHHHH-CSEEEESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHSCTTCCCHHHHSC--TTCEEEE
T ss_pred ---c---HHHHHHHHHHh-cCEEECCCHHHHHHHHHcCCCcccEEEeCCchHHHHHhhhhhhcchHHHHhc--cCCCEEE
Confidence 0 01122334444 899999998776632 2222222 2 34432221111 11122222 2223445
Q ss_pred EEEEeecc-cCCHHHHHHHHHHHHHhcCCcEEEEEe-CCCC-hHHHHHHHHHcCCeEEEeCCCC--ChHHHHhhcCeeEe
Q 010098 233 YYIGRMVW-SKGYEELLGLLNIYHKELAGLEMDLYG-NGED-FDQIQRAAKKLKLVVRVYPGRD--HADPIFHDYKVFLN 307 (518)
Q Consensus 233 l~vGr~~~-~Kg~~~ll~a~~~l~~~~~~~~l~ivG-~g~~-~~~l~~~~~~~~l~v~~~~~~~--~~~~l~~~adv~v~ 307 (518)
++.||... .|+++.+++++.++.+++|++++++.+ .++. .+.+++... ..-++.++++.. +...+|+.||++|.
T Consensus 229 v~~~r~~~~~~~l~~ll~a~~~l~~~~~~~~~v~~~~~~~~~~~~l~~~~~-~~~~v~l~~~l~~~~~~~l~~~ad~vv~ 307 (403)
T 3ot5_A 229 MTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHLNPAVREKAMAILG-GHERIHLIEPLDAIDFHNFLRKSYLVFT 307 (403)
T ss_dssp ECCCCHHHHTTHHHHHHHHHHHHHHHCTTEEEEEECCSCHHHHHHHHHHHT-TCTTEEEECCCCHHHHHHHHHHEEEEEE
T ss_pred EEeCcccccCcHHHHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHhC-CCCCEEEeCCCCHHHHHHHHHhcCEEEE
Confidence 56666543 578999999999999888999998874 3321 233333221 122477777654 77799999999998
Q ss_pred cCCCCCCchHHHHHHHcCCeEEee-CCCC-ccccccCCcEEeeC-CHHHHHHHHHHHHhCCCC--CCChHHH---hcCCH
Q 010098 308 PSTTDVVCTATAEALAMGKIVVCA-NHPS-NDFFKQFPNCRTYD-GRNGFVEATLKALAEEPA--QPTDAQT---HQLSW 379 (518)
Q Consensus 308 pS~~E~~~~~~lEAma~G~PVV~t-~~g~-~e~i~~~~~g~~~~-d~~~l~~~i~~ll~~~~~--~l~~~~~---~~~sw 379 (518)
+| |...+|||++|+|+|++ +.++ +|.+..+ ++++++ |++++++++.++++|++. +|++++. ...++
T Consensus 308 ~S-----Gg~~~EA~a~g~PvV~~~~~~~~~e~v~~g-~~~lv~~d~~~l~~ai~~ll~~~~~~~~m~~~~~~~g~~~aa 381 (403)
T 3ot5_A 308 DS-----GGVQEEAPGMGVPVLVLRDTTERPEGIEAG-TLKLIGTNKENLIKEALDLLDNKESHDKMAQAANPYGDGFAA 381 (403)
T ss_dssp CC-----HHHHHHGGGTTCCEEECCSSCSCHHHHHHT-SEEECCSCHHHHHHHHHHHHHCHHHHHHHHHSCCTTCCSCHH
T ss_pred CC-----ccHHHHHHHhCCCEEEecCCCcchhheeCC-cEEEcCCCHHHHHHHHHHHHcCHHHHHHHHhhcCcccCCcHH
Confidence 87 44448999999999999 5566 6777665 777775 999999999999998764 4443332 33445
Q ss_pred HHHHHHHHHHHH
Q 010098 380 ESATERFLQVAE 391 (518)
Q Consensus 380 ~~~~~~~~~~y~ 391 (518)
+++++.+.+.+.
T Consensus 382 ~rI~~~l~~~l~ 393 (403)
T 3ot5_A 382 NRILAAIKSHFE 393 (403)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 555555554443
No 33
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.73 E-value=3.2e-18 Score=169.65 Aligned_cols=240 Identities=11% Similarity=-0.036 Sum_probs=151.4
Q ss_pred CCcEEEEcCCchhhh-h-hchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEEEEeChhhh
Q 010098 117 EADIAVLEEPEHLTW-F-HHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQ 193 (518)
Q Consensus 117 ~~Dvi~~~~~~~~~~-~-~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~ 193 (518)
++|+|++++|...+. + .....+.++.+ |+++.+|+.++..... . .......+++.+. ||.|++.|+.++
T Consensus 74 ~~DvIi~q~P~~~~~~~~~~~~~~lk~~~~k~i~~ihDl~pl~~~~--~-----~~~~~~E~~~y~~-aD~Ii~~S~~~~ 145 (339)
T 3rhz_A 74 HGDVVIFQTPTWNTTEFDEKLMNKLKLYDIKIVLFIHDVVPLMFSG--N-----FYLMDRTIAYYNK-ADVVVAPSQKMI 145 (339)
T ss_dssp TTCEEEEEECCSSCHHHHHHHHHHHTTSSCEEEEEESCCHHHHCGG--G-----GGGHHHHHHHHTT-CSEEEESCHHHH
T ss_pred CCCEEEEeCCCcchhhHHHHHHHHHHhcCCEEEEEecccHHhhCcc--c-----hhhHHHHHHHHHH-CCEEEECCHHHH
Confidence 489999999875321 1 01111222334 8999999886643211 1 1111134555554 899999999888
Q ss_pred ccCCCceec-ccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCh
Q 010098 194 EYPNSIVCN-VHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDF 272 (518)
Q Consensus 194 ~~~~~~~~~-~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~ 272 (518)
+...+.... ..-++...++..... ....+.+.+.++|+|++.....++ .+ .++++|+++|+|++.
T Consensus 146 ~~l~~~G~~~~ki~~~~~~~~~~~~----~~~~~~~~~~i~yaG~l~k~~~L~----~l------~~~~~f~ivG~G~~~ 211 (339)
T 3rhz_A 146 DKLRDFGMNVSKTVVQGMWDHPTQA----PMFPAGLKREIHFPGNPERFSFVK----EW------KYDIPLKVYTWQNVE 211 (339)
T ss_dssp HHHHHTTCCCSEEEECCSCCCCCCC----CCCCCEEEEEEEECSCTTTCGGGG----GC------CCSSCEEEEESCCCC
T ss_pred HHHHHcCCCcCceeecCCCCccCcc----cccccCCCcEEEEeCCcchhhHHH----hC------CCCCeEEEEeCCccc
Confidence 753211111 011111222211100 011233468899999998533222 11 378999999999875
Q ss_pred HHHHHHHHHcCCeEEEeCCCC--ChHHHHhhcCeeEec-CC------CCCCchHHHHHHHcCCeEEeeCCCC-ccccccC
Q 010098 273 DQIQRAAKKLKLVVRVYPGRD--HADPIFHDYKVFLNP-ST------TDVVCTATAEALAMGKIVVCANHPS-NDFFKQF 342 (518)
Q Consensus 273 ~~l~~~~~~~~l~v~~~~~~~--~~~~l~~~adv~v~p-S~------~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~~ 342 (518)
+++ +++++|..+ ++..+++.+|+.+.. +. ...+|.+++||||||+|||+++.++ .+++.++
T Consensus 212 --------~l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~~~~v~~~ 282 (339)
T 3rhz_A 212 --------LPQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIANQELIENN 282 (339)
T ss_dssp --------CCT-TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTTTHHHHHH
T ss_pred --------CcC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccChhHHHHHHhC
Confidence 245 688888554 555888878866654 11 1246999999999999999999887 9999999
Q ss_pred CcEEeeCCHHHHHHHHHHHHhCCCCCCChHHH---hcCCHHHHHHHHH
Q 010098 343 PNCRTYDGRNGFVEATLKALAEEPAQPTDAQT---HQLSWESATERFL 387 (518)
Q Consensus 343 ~~g~~~~d~~~l~~~i~~ll~~~~~~l~~~~~---~~~sw~~~~~~~~ 387 (518)
.+|+++++.++++++|..+..+.-.+|+++++ +.++|+..+++.+
T Consensus 283 ~~G~~~~~~~e~~~~i~~l~~~~~~~m~~na~~~a~~~~~~~f~k~~l 330 (339)
T 3rhz_A 283 GLGWIVKDVEEAIMKVKNVNEDEYIELVKNVRSFNPILRKGFFTRRLL 330 (339)
T ss_dssp TCEEEESSHHHHHHHHHHCCHHHHHHHHHHHHHHTHHHHTTHHHHHHH
T ss_pred CeEEEeCCHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 99999999999999999875432237887777 4455555544433
No 34
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.69 E-value=6.7e-16 Score=156.90 Aligned_cols=261 Identities=9% Similarity=0.012 Sum_probs=157.4
Q ss_pred hhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhh----
Q 010098 106 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARV---- 180 (518)
Q Consensus 106 ~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 180 (518)
...+.+++++.+||+||++..... +...++..+ |++.+.|+...... .........+..++.++
T Consensus 103 ~~~l~~~l~~~~PD~Vv~~~~~~~-----~~~aa~~~giP~v~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 171 (391)
T 3tsa_A 103 LPEYLRLAEAWRPSVLLVDVCALI-----GRVLGGLLDLPVVLHRWGVDPTAG------PFSDRAHELLDPVCRHHGLTG 171 (391)
T ss_dssp HHHHHHHHHHHCCSEEEEETTCHH-----HHHHHHHTTCCEEEECCSCCCTTT------HHHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHhcCCCEEEeCcchhH-----HHHHHHHhCCCEEEEecCCccccc------cccchHHHHHHHHHHHcCCCC
Confidence 345677788889999999753322 333555556 88877765432111 11122333333333333
Q ss_pred --hccEEEEeChhhhccCCCceecccccCCCCcCcchhhHHHhhcC-CCCcccEEEEEEeecccCCH-HHHHHHHHHHHH
Q 010098 181 --HCHKVIRLSAATQEYPNSIVCNVHGVNPKFLEIGEKKMEQQQNG-NKAFTKGAYYIGRMVWSKGY-EELLGLLNIYHK 256 (518)
Q Consensus 181 --~ad~vi~~S~~~~~~~~~~~~~~~GVd~~~~~~~~~~~~~~~~~-~~~~~~~il~vGr~~~~Kg~-~~ll~a~~~l~~ 256 (518)
..+.++..+....+...... +....+.+............ .++...+++++|+....|+. ..+++++.+. .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~~~~~~~~~~~~~~~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~ 246 (391)
T 3tsa_A 172 LPTPELILDPCPPSLQASDAPQ----GAPVQYVPYNGSGAFPAWGAARTSARRVCICMGRMVLNATGPAPLLRAVAAA-T 246 (391)
T ss_dssp SCCCSEEEECSCGGGSCTTSCC----CEECCCCCCCCCEECCGGGSSCCSSEEEEEECCHHHHHHHCSHHHHHHHHHH-H
T ss_pred CCCCceEEEecChhhcCCCCCc----cCCeeeecCCCCcCCCchhhcCCCCCEEEEEcCCCCCcccchHHHHHHHHHh-c
Confidence 12666666644433322110 01111110000000001111 12234566677888765554 7778887777 7
Q ss_pred hcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-
Q 010098 257 ELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS- 335 (518)
Q Consensus 257 ~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~- 335 (518)
+.|++++++++++.+.+.++ .+.-++++.+. .+..+++..||++|.. +.+.+++|||++|+|+|+....+
T Consensus 247 ~~p~~~~v~~~~~~~~~~l~----~~~~~v~~~~~-~~~~~ll~~ad~~v~~----~G~~t~~Ea~~~G~P~v~~p~~~~ 317 (391)
T 3tsa_A 247 ELPGVEAVIAVPPEHRALLT----DLPDNARIAES-VPLNLFLRTCELVICA----GGSGTAFTATRLGIPQLVLPQYFD 317 (391)
T ss_dssp TSTTEEEEEECCGGGGGGCT----TCCTTEEECCS-CCGGGTGGGCSEEEEC----CCHHHHHHHHHTTCCEEECCCSTT
T ss_pred cCCCeEEEEEECCcchhhcc----cCCCCEEEecc-CCHHHHHhhCCEEEeC----CCHHHHHHHHHhCCCEEecCCccc
Confidence 77899999998876544433 22334666554 4567788999999954 44679999999999999975532
Q ss_pred ----ccccccCCcEEeeC------CHHHHHHHHHHHHhCCCC--CCChHHH---hcCCHHHHHHHHHHHHH
Q 010098 336 ----NDFFKQFPNCRTYD------GRNGFVEATLKALAEEPA--QPTDAQT---HQLSWESATERFLQVAE 391 (518)
Q Consensus 336 ----~e~i~~~~~g~~~~------d~~~l~~~i~~ll~~~~~--~l~~~~~---~~~sw~~~~~~~~~~y~ 391 (518)
.+.+.+...|..++ |++++++++.++++|++. ++++.++ ...+++.+++.+.++..
T Consensus 318 q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 318 QFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLGDTGFAAAAIKLSDEITAMPHPAALVRTLENTAA 388 (391)
T ss_dssp HHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHHHHHTCTHHHHHHHHHHHHHHTSCCHHHHHHHHHHC--
T ss_pred HHHHHHHHHHcCCEEecCcccccCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 56677778888864 589999999999999875 5555444 67888888887776543
No 35
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.66 E-value=5.3e-16 Score=158.11 Aligned_cols=251 Identities=10% Similarity=-0.028 Sum_probs=136.5
Q ss_pred hhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhh----
Q 010098 107 GDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVH---- 181 (518)
Q Consensus 107 ~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 181 (518)
..+.+++++.+||+||++..... +...++..+ |++.+.|+..... .......+.+...+.+..
T Consensus 113 ~~l~~~~~~~~pDlVv~d~~~~~-----~~~~a~~~giP~v~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~ 180 (398)
T 4fzr_A 113 DEALALAERWKPDLVLTETYSLT-----GPLVAATLGIPWIEQSIRLASPE-------LIKSAGVGELAPELAELGLTDF 180 (398)
T ss_dssp HHHHHHHHHHCCSEEEEETTCTH-----HHHHHHHHTCCEEEECCSSCCCH-------HHHHHHHHHTHHHHHTTTCSSC
T ss_pred HHHHHHHHhCCCCEEEECccccH-----HHHHHHhhCCCEEEeccCCCCch-------hhhHHHHHHHHHHHHHcCCCCC
Confidence 35677788889999997653322 233455555 8888777542111 011122233333333331
Q ss_pred --ccEEEEeChhhhccCCCceecccccCCCCcCcc-hhhHHHh-hcCCCCcccEEEEEEeecccC----------CHHHH
Q 010098 182 --CHKVIRLSAATQEYPNSIVCNVHGVNPKFLEIG-EKKMEQQ-QNGNKAFTKGAYYIGRMVWSK----------GYEEL 247 (518)
Q Consensus 182 --ad~vi~~S~~~~~~~~~~~~~~~GVd~~~~~~~-~~~~~~~-~~~~~~~~~~il~vGr~~~~K----------g~~~l 247 (518)
.+..+..+....+..... .+....+.... ....... ....++...+++++|++...| .+..+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~ 256 (398)
T 4fzr_A 181 PDPLLSIDVCPPSMEAQPKP----GTTKMRYVPYNGRNDQVPSWVFEERKQPRLCLTFGTRVPLPNTNTIPGGLSLLQAL 256 (398)
T ss_dssp CCCSEEEECSCGGGC----C----CCEECCCCCCCCSSCCCCHHHHSCCSSCEEECC----------------CCSHHHH
T ss_pred CCCCeEEEeCChhhCCCCCC----CCCCeeeeCCCCCCCCCchhhhcCCCCCEEEEEccCcccccccccccchHHHHHHH
Confidence 244554443322222100 00001111100 0000000 011123356677889987554 45666
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCe
Q 010098 248 LGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKI 327 (518)
Q Consensus 248 l~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~P 327 (518)
++++.. . ++++++++++.+.+.++ .+.-++.+.+.. +..+++..||++|. ++.+.+++|||++|+|
T Consensus 257 ~~al~~----~-~~~~v~~~~~~~~~~l~----~~~~~v~~~~~~-~~~~ll~~ad~~v~----~gG~~t~~Ea~~~G~P 322 (398)
T 4fzr_A 257 SQELPK----L-GFEVVVAVSDKLAQTLQ----PLPEGVLAAGQF-PLSAIMPACDVVVH----HGGHGTTLTCLSEGVP 322 (398)
T ss_dssp HHHGGG----G-TCEEEECCCC------------CCTTEEEESCC-CHHHHGGGCSEEEE----CCCHHHHHHHHHTTCC
T ss_pred HHHHHh----C-CCEEEEEeCCcchhhhc----cCCCcEEEeCcC-CHHHHHhhCCEEEe----cCCHHHHHHHHHhCCC
Confidence 666533 2 68899988876544443 234457777765 68899999999995 4457899999999999
Q ss_pred EEeeCCC----C-ccccccCCcEEeeC----CHHHHHHHHHHHHhCCCC--CCChHHH---hcCCHHHHHHHHH
Q 010098 328 VVCANHP----S-NDFFKQFPNCRTYD----GRNGFVEATLKALAEEPA--QPTDAQT---HQLSWESATERFL 387 (518)
Q Consensus 328 VV~t~~g----~-~e~i~~~~~g~~~~----d~~~l~~~i~~ll~~~~~--~l~~~~~---~~~sw~~~~~~~~ 387 (518)
+|+...+ + .+.+.+...|+.++ |+++++++|.++++|+.. ++++.++ ...+|+.+++.+.
T Consensus 323 ~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (398)
T 4fzr_A 323 QVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRDDSSYVGNARRLAAEMATLPTPADIVRLIE 396 (398)
T ss_dssp EEECCCSGGGHHHHHHHHHTTSEEECC-------CHHHHHHHHHHCTHHHHHHHHHHHHHTTSCCHHHHHHHHT
T ss_pred EEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 9996554 3 66777888898864 788999999999999875 5555544 6788888887664
No 36
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.66 E-value=1.3e-15 Score=156.74 Aligned_cols=153 Identities=12% Similarity=0.097 Sum_probs=108.0
Q ss_pred ccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEE-EEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEe
Q 010098 229 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEM-DLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLN 307 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l-~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~ 307 (518)
..+++++|++. .++.+.+.+++..+.+ .+++++ +++|.+++.+.++ .+.-++.+.+..++. ++|+.||+||.
T Consensus 233 ~~v~v~~Gs~~-~~~~~~~~~~~~~l~~-~~~~~~~~~~G~~~~~~~l~----~~~~~v~~~~~~~~~-~~l~~ad~~v~ 305 (430)
T 2iyf_A 233 KVVLVSLGSAF-TKQPAFYRECVRAFGN-LPGWHLVLQIGRKVTPAELG----ELPDNVEVHDWVPQL-AILRQADLFVT 305 (430)
T ss_dssp EEEEEECTTTC-C-CHHHHHHHHHHHTT-CTTEEEEEECC---CGGGGC----SCCTTEEEESSCCHH-HHHTTCSEEEE
T ss_pred CeEEEEcCCCC-CCcHHHHHHHHHHHhc-CCCeEEEEEeCCCCChHHhc----cCCCCeEEEecCCHH-HHhhccCEEEE
Confidence 46778899987 5555555555544432 256787 5678876655442 233357777776666 89999999997
Q ss_pred cCCCCCCchHHHHHHHcCCeEEeeCCCC-----ccccccCCcEEeeC----CHHHHHHHHHHHHhCCCC--CCChHHH--
Q 010098 308 PSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEPA--QPTDAQT-- 374 (518)
Q Consensus 308 pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~~~~g~~~~----d~~~l~~~i~~ll~~~~~--~l~~~~~-- 374 (518)
.+ .+++++|||++|+|+|+++.++ .+.+.+...|+.++ |+++++++|.++++|++. ++++.++
T Consensus 306 ~~----G~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 381 (430)
T 2iyf_A 306 HA----GAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALALVDDPEVARRLRRIQAEM 381 (430)
T ss_dssp CC----CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCCC-CCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CC----CccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 65 2479999999999999998764 45566777888864 889999999999998764 4555444
Q ss_pred -hcCCHHHHHHHHHHHHHh
Q 010098 375 -HQLSWESATERFLQVAEL 392 (518)
Q Consensus 375 -~~~sw~~~~~~~~~~y~~ 392 (518)
...+++.+++.+.+.++.
T Consensus 382 ~~~~~~~~~~~~i~~~~~~ 400 (430)
T 2iyf_A 382 AQEGGTRRAADLIEAELPA 400 (430)
T ss_dssp HHHCHHHHHHHHHHTTSCC
T ss_pred HhcCcHHHHHHHHHHHhhc
Confidence 567888888888777653
No 37
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.56 E-value=6.4e-14 Score=142.56 Aligned_cols=150 Identities=13% Similarity=0.021 Sum_probs=103.6
Q ss_pred ccEEEEEEeecccC--CHHHHHHHHHHHHHhcCCcEEEE-EeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCee
Q 010098 229 TKGAYYIGRMVWSK--GYEELLGLLNIYHKELAGLEMDL-YGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVF 305 (518)
Q Consensus 229 ~~~il~vGr~~~~K--g~~~ll~a~~~l~~~~~~~~l~i-vG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~ 305 (518)
..++++.|+....+ .+..+++++ . ..+ +++++ +|++.+.+.++. +.-++++.+..++. ++++.||++
T Consensus 232 ~~v~v~~G~~~~~~~~~~~~~~~~~---~-~~~-~~~~~~~g~~~~~~~~~~----~~~~v~~~~~~~~~-~ll~~ad~~ 301 (402)
T 3ia7_A 232 PVLLVSLGNQFNEHPEFFRACAQAF---A-DTP-WHVVMAIGGFLDPAVLGP----LPPNVEAHQWIPFH-SVLAHARAC 301 (402)
T ss_dssp CEEEEECCSCSSCCHHHHHHHHHHH---T-TSS-CEEEEECCTTSCGGGGCS----CCTTEEEESCCCHH-HHHTTEEEE
T ss_pred CEEEEECCCCCcchHHHHHHHHHHH---h-cCC-cEEEEEeCCcCChhhhCC----CCCcEEEecCCCHH-HHHhhCCEE
Confidence 45677888876554 233344443 2 333 56655 566555444332 33357777766666 999999999
Q ss_pred EecCCCCCCchHHHHHHHcCCeEEeeCC-C----C-ccccccCCcEEeeC----CHHHHHHHHHHHHhCCCC--CCChHH
Q 010098 306 LNPSTTDVVCTATAEALAMGKIVVCANH-P----S-NDFFKQFPNCRTYD----GRNGFVEATLKALAEEPA--QPTDAQ 373 (518)
Q Consensus 306 v~pS~~E~~~~~~lEAma~G~PVV~t~~-g----~-~e~i~~~~~g~~~~----d~~~l~~~i~~ll~~~~~--~l~~~~ 373 (518)
|..+- ..+++|||++|+|+|+... . . .+.+.+...|..++ |++++++++.++++|++. ++++.+
T Consensus 302 v~~~G----~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~~~~ 377 (402)
T 3ia7_A 302 LTHGT----TGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAADSAVRERVRRMQ 377 (402)
T ss_dssp EECCC----HHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred EECCC----HHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 97652 4788999999999997655 3 2 66777778888763 899999999999998764 444333
Q ss_pred H---hcCCHHHHHHHHHHHHHh
Q 010098 374 T---HQLSWESATERFLQVAEL 392 (518)
Q Consensus 374 ~---~~~sw~~~~~~~~~~y~~ 392 (518)
+ ...+++.+++.+.++++.
T Consensus 378 ~~~~~~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 378 RDILSSGGPARAADEVEAYLGR 399 (402)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHhhCChHHHHHHHHHHHHhh
Confidence 3 667888888888887763
No 38
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.55 E-value=2.1e-14 Score=146.26 Aligned_cols=147 Identities=9% Similarity=0.023 Sum_probs=104.8
Q ss_pred ccEEEEEEeeccc-CCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEe
Q 010098 229 TKGAYYIGRMVWS-KGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLN 307 (518)
Q Consensus 229 ~~~il~vGr~~~~-Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~ 307 (518)
..+++++|++... ++.+.+.+++..+.+. ++++++++++.+.+.++ .+.-++.+.+.. +..+++..||+||.
T Consensus 233 ~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~--~~~~v~~~g~~~~~~l~----~~~~~v~~~~~~-~~~~ll~~ad~~v~ 305 (398)
T 3oti_A 233 PEVAITMGTIELQAFGIGAVEPIIAAAGEV--DADFVLALGDLDISPLG----TLPRNVRAVGWT-PLHTLLRTCTAVVH 305 (398)
T ss_dssp CEEEECCTTTHHHHHCGGGHHHHHHHHHTS--SSEEEEECTTSCCGGGC----SCCTTEEEESSC-CHHHHHTTCSEEEE
T ss_pred CEEEEEcCCCccccCcHHHHHHHHHHHHcC--CCEEEEEECCcChhhhc----cCCCcEEEEccC-CHHHHHhhCCEEEE
Confidence 4567778998654 4555555555555443 68999998877654433 233357777766 88899999999995
Q ss_pred cCCCCCCchHHHHHHHcCCeEEeeC----CCC-c--cccccCCcEEeeC----CHHHHHHHHHHHHhCCCC--CCChHHH
Q 010098 308 PSTTDVVCTATAEALAMGKIVVCAN----HPS-N--DFFKQFPNCRTYD----GRNGFVEATLKALAEEPA--QPTDAQT 374 (518)
Q Consensus 308 pS~~E~~~~~~lEAma~G~PVV~t~----~g~-~--e~i~~~~~g~~~~----d~~~l~~~i~~ll~~~~~--~l~~~~~ 374 (518)
. +.+.+++|||++|+|+|+.. .+. . +.+.+...|+.++ ++++++ ++++|+.. ++++.++
T Consensus 306 ~----~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l~----~ll~~~~~~~~~~~~~~ 377 (398)
T 3oti_A 306 H----GGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADLLR----RLIGDESLRTAAREVRE 377 (398)
T ss_dssp C----CCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEECCGGGCCHHHHH----HHHHCHHHHHHHHHHHH
T ss_pred C----CCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEeeCCCCCCHHHHH----HHHcCHHHHHHHHHHHH
Confidence 4 45679999999999999953 343 6 8888888898874 444454 78888764 5555444
Q ss_pred ---hcCCHHHHHHHHHHHH
Q 010098 375 ---HQLSWESATERFLQVA 390 (518)
Q Consensus 375 ---~~~sw~~~~~~~~~~y 390 (518)
...+|+.+++.+.++.
T Consensus 378 ~~~~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 378 EMVALPTPAETVRRIVERI 396 (398)
T ss_dssp HHHTSCCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHh
Confidence 7789999988887764
No 39
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.50 E-value=4.6e-13 Score=137.00 Aligned_cols=149 Identities=11% Similarity=0.036 Sum_probs=99.2
Q ss_pred ccEEEEEEeecccCC--HHHHHHHHHHHHHhcCCcEEEE-EeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCee
Q 010098 229 TKGAYYIGRMVWSKG--YEELLGLLNIYHKELAGLEMDL-YGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVF 305 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg--~~~ll~a~~~l~~~~~~~~l~i-vG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~ 305 (518)
..++++.|+.....+ +..+++++ .+.+ +++++ +|.+.+.+.++. +.-++.+.+..++. +++..||++
T Consensus 248 ~~v~v~~Gs~~~~~~~~~~~~~~al----~~~~-~~~v~~~g~~~~~~~l~~----~~~~v~~~~~~~~~-~ll~~ad~~ 317 (415)
T 3rsc_A 248 PVVLVSLGTTFNDRPGFFRDCARAF----DGQP-WHVVMTLGGQVDPAALGD----LPPNVEAHRWVPHV-KVLEQATVC 317 (415)
T ss_dssp CEEEEECTTTSCCCHHHHHHHHHHH----TTSS-CEEEEECTTTSCGGGGCC----CCTTEEEESCCCHH-HHHHHEEEE
T ss_pred CEEEEECCCCCCChHHHHHHHHHHH----hcCC-cEEEEEeCCCCChHHhcC----CCCcEEEEecCCHH-HHHhhCCEE
Confidence 456667787754332 33333333 3333 77776 566555544432 33356777665554 999999999
Q ss_pred EecCCCCCCchHHHHHHHcCCeEEeeCCCC-----ccccccCCcEEeeC----CHHHHHHHHHHHHhCCCC--CCChHHH
Q 010098 306 LNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEPA--QPTDAQT 374 (518)
Q Consensus 306 v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~~~~g~~~~----d~~~l~~~i~~ll~~~~~--~l~~~~~ 374 (518)
|..+ -..+++|||++|+|+|+....+ .+.+.+...|...+ ++++++++|.++++|++. ++++.++
T Consensus 318 v~~~----G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~ 393 (415)
T 3rsc_A 318 VTHG----GMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVAADPALLARVEAMRG 393 (415)
T ss_dssp EESC----CHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred EECC----cHHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 9765 2468999999999999965432 56666667777753 889999999999998764 3433333
Q ss_pred ---hcCCHHHHHHHHHHHHH
Q 010098 375 ---HQLSWESATERFLQVAE 391 (518)
Q Consensus 375 ---~~~sw~~~~~~~~~~y~ 391 (518)
...+++.+++.+.++++
T Consensus 394 ~~~~~~~~~~~~~~i~~~~~ 413 (415)
T 3rsc_A 394 HVRRAGGAARAADAVEAYLA 413 (415)
T ss_dssp HHHHSCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhh
Confidence 56777778777777654
No 40
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.49 E-value=3.9e-13 Score=136.10 Aligned_cols=230 Identities=8% Similarity=-0.054 Sum_probs=132.8
Q ss_pred hhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhh---
Q 010098 106 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVH--- 181 (518)
Q Consensus 106 ~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 181 (518)
...+.+.+++.+||+||++..... +...++.++ |++.+.+..... .. ....+...+.++..+..
T Consensus 96 ~~~l~~~l~~~~pD~Vi~~~~~~~-----~~~~a~~~giP~v~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~g~~~ 163 (384)
T 2p6p_A 96 LPRMLDFSRAWRPDLIVGGTMSYV-----APLLALHLGVPHARQTWDAVDA--DG-----IHPGADAELRPELSELGLER 163 (384)
T ss_dssp HHHHHHHHHHHCCSEEEEETTCTH-----HHHHHHHHTCCEEEECCSSCCC--TT-----THHHHHHHTHHHHHHTTCSS
T ss_pred HHHHHHHHhccCCcEEEECcchhh-----HHHHHHhcCCCEEEeccCCccc--ch-----hhHHHHHHHHHHHHHcCCCC
Confidence 345666677789999999764322 233555666 888776543210 00 00111222222222220
Q ss_pred ---ccEEEEeChhhhccCCCceecccccCCCCcC-cchhhHHHhhcCCCCcccEEEEEEeeccc-------CCHHHHHHH
Q 010098 182 ---CHKVIRLSAATQEYPNSIVCNVHGVNPKFLE-IGEKKMEQQQNGNKAFTKGAYYIGRMVWS-------KGYEELLGL 250 (518)
Q Consensus 182 ---ad~vi~~S~~~~~~~~~~~~~~~GVd~~~~~-~~~~~~~~~~~~~~~~~~~il~vGr~~~~-------Kg~~~ll~a 250 (518)
++.+++.+....+........ .+....+. +....... ...++...+++++|++... +.+..++++
T Consensus 164 ~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l--~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~a 239 (384)
T 2p6p_A 164 LPAPDLFIDICPPSLRPANAAPAR--MMRHVATSRQCPLEPWM--YTRDTRQRVLVTSGSRVAKESYDRNFDFLRGLAKD 239 (384)
T ss_dssp CCCCSEEEECSCGGGSCTTSCCCE--ECCCCCCCCCCBCCHHH--HCCCSSCEEEEECSSSSSCCSSCCCCTTHHHHHHH
T ss_pred CCCCCeEEEECCHHHCCCCCCCCC--ceEecCCCCCCCCCchh--hcCCCCCEEEEECCCCCccccccccHHHHHHHHHH
Confidence 577888775443332211000 01000011 00000000 1112224577889998765 567788888
Q ss_pred HHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEe
Q 010098 251 LNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVC 330 (518)
Q Consensus 251 ~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~ 330 (518)
+.++ ++++++++++.+.+.++ .+.-++.+ +.. +..++|..||+||..+ .+++++|||++|+|+|+
T Consensus 240 l~~~-----~~~~~~~~g~~~~~~l~----~~~~~v~~-~~~-~~~~~l~~~d~~v~~~----G~~t~~Ea~~~G~P~v~ 304 (384)
T 2p6p_A 240 LVRW-----DVELIVAAPDTVAEALR----AEVPQARV-GWT-PLDVVAPTCDLLVHHA----GGVSTLTGLSAGVPQLL 304 (384)
T ss_dssp HHTT-----TCEEEEECCHHHHHHHH----HHCTTSEE-ECC-CHHHHGGGCSEEEECS----CTTHHHHHHHTTCCEEE
T ss_pred HhcC-----CcEEEEEeCCCCHHhhC----CCCCceEE-cCC-CHHHHHhhCCEEEeCC----cHHHHHHHHHhCCCEEE
Confidence 7432 67888876543333333 23334666 544 6789999999999763 35789999999999999
Q ss_pred eCCCC-----ccccccCCcEEeeC----CHHHHHHHHHHHHhCCC
Q 010098 331 ANHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEP 366 (518)
Q Consensus 331 t~~g~-----~e~i~~~~~g~~~~----d~~~l~~~i~~ll~~~~ 366 (518)
.+..+ .+.+.+...|+.++ ++++++++|.++++|++
T Consensus 305 ~p~~~dq~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~ 349 (384)
T 2p6p_A 305 IPKGSVLEAPARRVADYGAAIALLPGEDSTEAIADSCQELQAKDT 349 (384)
T ss_dssp CCCSHHHHHHHHHHHHHTSEEECCTTCCCHHHHHHHHHHHHHCHH
T ss_pred ccCcccchHHHHHHHHCCCeEecCcCCCCHHHHHHHHHHHHcCHH
Confidence 98753 45566667788764 78999999999998753
No 41
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.39 E-value=3.2e-12 Score=129.05 Aligned_cols=244 Identities=11% Similarity=0.023 Sum_probs=148.4
Q ss_pred hhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccE
Q 010098 106 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHK 184 (518)
Q Consensus 106 ~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 184 (518)
...+.+++++++||+|+++......+. ...+++.+ |++ .++.....+.. .+.. .....++.+. +|.
T Consensus 83 ~~~l~~~l~~~kPD~Vlv~gd~~~~~a---alaA~~~~IPv~-h~eaglrs~~~-----~~pe---e~nR~~~~~~-a~~ 149 (385)
T 4hwg_A 83 IEKVDEVLEKEKPDAVLFYGDTNSCLS---AIAAKRRKIPIF-HMEAGNRCFDQ-----RVPE---EINRKIIDHI-SDV 149 (385)
T ss_dssp HHHHHHHHHHHCCSEEEEESCSGGGGG---HHHHHHTTCCEE-EESCCCCCSCT-----TSTH---HHHHHHHHHH-CSE
T ss_pred HHHHHHHHHhcCCcEEEEECCchHHHH---HHHHHHhCCCEE-EEeCCCccccc-----cCcH---HHHHHHHHhh-hce
Confidence 556788899999999999986544222 33445545 754 33322211110 0000 1112233344 899
Q ss_pred EEEeChhhhccC------CCceecc-c-ccCCCCcC--cchhhHHHhhcCCCCcccEEEEEEeec---ccCCHHHHHHHH
Q 010098 185 VIRLSAATQEYP------NSIVCNV-H-GVNPKFLE--IGEKKMEQQQNGNKAFTKGAYYIGRMV---WSKGYEELLGLL 251 (518)
Q Consensus 185 vi~~S~~~~~~~------~~~~~~~-~-GVd~~~~~--~~~~~~~~~~~~~~~~~~~il~vGr~~---~~Kg~~~ll~a~ 251 (518)
+++.|+..++.. ++.+..+ + ++|...+. .......+...+.++...++++.||.. ..|+++.+++++
T Consensus 150 ~~~~te~~~~~l~~~G~~~~~I~vtGnp~~D~~~~~~~~~~~~~~~~~lgl~~~~~iLvt~hr~e~~~~~~~l~~ll~al 229 (385)
T 4hwg_A 150 NITLTEHARRYLIAEGLPAELTFKSGSHMPEVLDRFMPKILKSDILDKLSLTPKQYFLISSHREENVDVKNNLKELLNSL 229 (385)
T ss_dssp EEESSHHHHHHHHHTTCCGGGEEECCCSHHHHHHHHHHHHHHCCHHHHTTCCTTSEEEEEECCC-----CHHHHHHHHHH
T ss_pred eecCCHHHHHHHHHcCCCcCcEEEECCchHHHHHHhhhhcchhHHHHHcCCCcCCEEEEEeCCchhcCcHHHHHHHHHHH
Confidence 999998776632 2222221 2 23322111 011222334456555344455555543 347889999999
Q ss_pred HHHHHhcCCcEEEEEeCCCChHHHHHHHHHc-C-C----eEEEeCCC--CChHHHHhhcCeeEecCCCCCCchHHHHHHH
Q 010098 252 NIYHKELAGLEMDLYGNGEDFDQIQRAAKKL-K-L----VVRVYPGR--DHADPIFHDYKVFLNPSTTDVVCTATAEALA 323 (518)
Q Consensus 252 ~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~-~-l----~v~~~~~~--~~~~~l~~~adv~v~pS~~E~~~~~~lEAma 323 (518)
.++.++. ++.+++... + .+++.++++ + + ++.+.++. .+...+|+.||+++.+| |..+.||++
T Consensus 230 ~~l~~~~-~~~vv~p~~-p---~~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adlvvt~S-----Ggv~~EA~a 299 (385)
T 4hwg_A 230 QMLIKEY-NFLIIFSTH-P---RTKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFCILSDS-----GTITEEASI 299 (385)
T ss_dssp HHHHHHH-CCEEEEEEC-H---HHHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSEEEECC-----TTHHHHHHH
T ss_pred HHHHhcC-CeEEEEECC-h---HHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcEEEECC-----ccHHHHHHH
Confidence 9997766 777777553 2 355555554 3 2 35665544 35669999999999776 456899999
Q ss_pred cCCeEEeeCCCC--ccccccCCcEEeeC-CHHHHHHHHHHHHhCCCC--CCChHH
Q 010098 324 MGKIVVCANHPS--NDFFKQFPNCRTYD-GRNGFVEATLKALAEEPA--QPTDAQ 373 (518)
Q Consensus 324 ~G~PVV~t~~g~--~e~i~~~~~g~~~~-d~~~l~~~i~~ll~~~~~--~l~~~~ 373 (518)
+|+|+|+.+... +|.++.| ++.+++ |++++++++.++++|+.. .|++++
T Consensus 300 lG~Pvv~~~~~ter~e~v~~G-~~~lv~~d~~~i~~ai~~ll~d~~~~~~m~~~~ 353 (385)
T 4hwg_A 300 LNLPALNIREAHERPEGMDAG-TLIMSGFKAERVLQAVKTITEEHDNNKRTQGLV 353 (385)
T ss_dssp TTCCEEECSSSCSCTHHHHHT-CCEECCSSHHHHHHHHHHHHTTCBTTBCCSCCC
T ss_pred cCCCEEEcCCCccchhhhhcC-ceEEcCCCHHHHHHHHHHHHhChHHHHHhhccC
Confidence 999999986653 6777766 556664 999999999999999876 565533
No 42
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.35 E-value=1.4e-11 Score=127.10 Aligned_cols=149 Identities=11% Similarity=0.012 Sum_probs=104.4
Q ss_pred ccEEEEEEeeccc-----CCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcC
Q 010098 229 TKGAYYIGRMVWS-----KGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYK 303 (518)
Q Consensus 229 ~~~il~vGr~~~~-----Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~ad 303 (518)
..++++.|++... |.+..+++++..+ ++++++.+++.+.+.++ .+.-++.+.+..++ .++|..||
T Consensus 268 ~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~~~~l~----~~~~~v~~~~~~~~-~~ll~~ad 337 (441)
T 2yjn_A 268 RRVCLTLGISSRENSIGQVSIEELLGAVGDV-----DAEIIATFDAQQLEGVA----NIPDNVRTVGFVPM-HALLPTCA 337 (441)
T ss_dssp CEEEEEC----------CCSTTTTHHHHHTS-----SSEEEECCCTTTTSSCS----SCCSSEEECCSCCH-HHHGGGCS
T ss_pred CEEEEECCCCcccccChHHHHHHHHHHHHcC-----CCEEEEEECCcchhhhc----cCCCCEEEecCCCH-HHHHhhCC
Confidence 4567788988753 7888888888532 57888877655433222 22334666665554 78999999
Q ss_pred eeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----ccccccCCcEEeeC----CHHHHHHHHHHHHhCCCC--CCChH
Q 010098 304 VFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEPA--QPTDA 372 (518)
Q Consensus 304 v~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~~~~g~~~~----d~~~l~~~i~~ll~~~~~--~l~~~ 372 (518)
++|.. +.+++++|||++|+|+|+.+..+ .+.+.+...|+..+ ++++++++|.++++|+.. ++++.
T Consensus 338 ~~V~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~ 413 (441)
T 2yjn_A 338 ATVHH----GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVLDDPAHRAGAARM 413 (441)
T ss_dssp EEEEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTTCCHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred EEEEC----CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEcccccCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99964 44689999999999999998753 45666777788764 889999999999998764 44443
Q ss_pred HH---hcCCHHHHHHHHHHHHH
Q 010098 373 QT---HQLSWESATERFLQVAE 391 (518)
Q Consensus 373 ~~---~~~sw~~~~~~~~~~y~ 391 (518)
++ ...+++.+++.+.++..
T Consensus 414 ~~~~~~~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 414 RDDMLAEPSPAEVVGICEELAA 435 (441)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHH
Confidence 33 66788888888877765
No 43
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.26 E-value=2.2e-10 Score=116.78 Aligned_cols=147 Identities=10% Similarity=-0.015 Sum_probs=97.3
Q ss_pred ccEEEEEEeec-ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEe
Q 010098 229 TKGAYYIGRMV-WSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLN 307 (518)
Q Consensus 229 ~~~il~vGr~~-~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~ 307 (518)
..++++.|++. ..+.+..+++++..+ ++++++.++..+.+.. ...-++.+.+.. +..+++..||++|.
T Consensus 222 ~~Vlv~~Gs~~~~~~~~~~~~~al~~~-----~~~vv~~~g~~~~~~~-----~~~~~v~~~~~~-~~~~ll~~~d~~v~ 290 (404)
T 3h4t_A 222 PPVYVGFGSGPAPAEAARVAIEAVRAQ-----GRRVVLSSGWAGLGRI-----DEGDDCLVVGEV-NHQVLFGRVAAVVH 290 (404)
T ss_dssp CCEEECCTTSCCCTTHHHHHHHHHHHT-----TCCEEEECTTTTCCCS-----SCCTTEEEESSC-CHHHHGGGSSEEEE
T ss_pred CeEEEECCCCCCcHHHHHHHHHHHHhC-----CCEEEEEeCCcccccc-----cCCCCEEEecCC-CHHHHHhhCcEEEE
Confidence 45667778887 566677777777543 4667776543332211 112346666544 55889999999995
Q ss_pred cCCCCCCchHHHHHHHcCCeEEeeCCCC-----ccccccCCcEEeeC----CHHHHHHHHHHHHhCCCC--CCChHHH--
Q 010098 308 PSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEPA--QPTDAQT-- 374 (518)
Q Consensus 308 pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~~~~g~~~~----d~~~l~~~i~~ll~~~~~--~l~~~~~-- 374 (518)
.+ -..++.||+++|+|+|+....+ .+.+.+...|...+ +++++.++|.++++ ++. ++.+.+.
T Consensus 291 ~g----G~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~-~~~~~~~~~~~~~~ 365 (404)
T 3h4t_A 291 HG----GAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALATALT-PGIRARAAAVAGTI 365 (404)
T ss_dssp CC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHTS-HHHHHHHHHHHTTC
T ss_pred CC----cHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEeccCcCCCCHHHHHHHHHHHhC-HHHHHHHHHHHHHH
Confidence 54 2478999999999999987654 34455556676642 89999999999997 543 3333222
Q ss_pred hcCCHHHHHHHHHHHHH
Q 010098 375 HQLSWESATERFLQVAE 391 (518)
Q Consensus 375 ~~~sw~~~~~~~~~~y~ 391 (518)
..-.++.+++.+++.++
T Consensus 366 ~~~~~~~~~~~i~~~~~ 382 (404)
T 3h4t_A 366 RTDGTTVAAKLLLEAIS 382 (404)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 22456777777777665
No 44
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.26 E-value=6e-10 Score=114.18 Aligned_cols=126 Identities=13% Similarity=0.046 Sum_probs=86.4
Q ss_pred ccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEE-EEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEe
Q 010098 229 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMD-LYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLN 307 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~-ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~ 307 (518)
..++++.|+.. .+..+.+.+++..+.+ .+++++ ++|.+.+.+.+. .+.-++.+.+...+. ++|+.||+||.
T Consensus 256 ~~v~v~~Gs~~-~~~~~~~~~~~~al~~--~~~~~~~~~g~~~~~~~~~----~~~~~v~~~~~~~~~-~~l~~~d~~v~ 327 (424)
T 2iya_A 256 PVLLIALGSAF-TDHLDFYRTCLSAVDG--LDWHVVLSVGRFVDPADLG----EVPPNVEVHQWVPQL-DILTKASAFIT 327 (424)
T ss_dssp CEEEEECCSSS-CCCHHHHHHHHHHHTT--CSSEEEEECCTTSCGGGGC----SCCTTEEEESSCCHH-HHHTTCSEEEE
T ss_pred CEEEEEcCCCC-cchHHHHHHHHHHHhc--CCcEEEEEECCcCChHHhc----cCCCCeEEecCCCHH-HHHhhCCEEEE
Confidence 45667788876 3344444444444432 367774 467765544332 233346777766555 89999999986
Q ss_pred cCCCCCCchHHHHHHHcCCeEEeeCCCC-----ccccccCCcEEeeC----CHHHHHHHHHHHHhCCC
Q 010098 308 PSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEP 366 (518)
Q Consensus 308 pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~~~~g~~~~----d~~~l~~~i~~ll~~~~ 366 (518)
.+ ..++++|||++|+|+|+....+ .+.+.+...|+..+ ++++++++|.++++|++
T Consensus 328 ~~----G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~ 391 (424)
T 2iya_A 328 HA----GMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASDPG 391 (424)
T ss_dssp CC----CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHHHHHCHH
T ss_pred CC----chhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHHcCHH
Confidence 43 3589999999999999998753 45566667777764 89999999999998875
No 45
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.19 E-value=2.4e-11 Score=123.47 Aligned_cols=127 Identities=17% Similarity=0.100 Sum_probs=80.2
Q ss_pred ccEEEEEEeecccC-CHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEe
Q 010098 229 TKGAYYIGRMVWSK-GYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLN 307 (518)
Q Consensus 229 ~~~il~vGr~~~~K-g~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~ 307 (518)
..++++.|++...+ +.+.+.+++..+.+. +.++++.+.+.+.+... .+.-++.+.. ..+..++|..+|+||.
T Consensus 238 ~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~--~~~~v~~~~~~~~~~~~----~~~~~v~~~~-~~p~~~lL~~~~~~v~ 310 (400)
T 4amg_A 238 RRIAVTLGSIDALSGGIAKLAPLFSEVADV--DAEFVLTLGGGDLALLG----ELPANVRVVE-WIPLGALLETCDAIIH 310 (400)
T ss_dssp CEEEECCCSCC--CCSSSTTHHHHHHGGGS--SSEEEEECCTTCCCCCC----CCCTTEEEEC-CCCHHHHHTTCSEEEE
T ss_pred cEEEEeCCcccccCccHHHHHHHHHHhhcc--CceEEEEecCccccccc----cCCCCEEEEe-ecCHHHHhhhhhheec
Confidence 34556677776544 334444444444332 56777766544332211 1122344433 4467789999999984
Q ss_pred cCCCCCCchHHHHHHHcCCeEEeeCCCC-----ccccccCCcEEeeCCHHHHHHHHHHHHhCCC
Q 010098 308 PSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYDGRNGFVEATLKALAEEP 366 (518)
Q Consensus 308 pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~~ 366 (518)
.+..++++|||++|+|+|+....+ .+.+.+...|+..++.+..+++|.++++|+.
T Consensus 311 ----h~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l~~~~~~~~al~~lL~d~~ 370 (400)
T 4amg_A 311 ----HGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDAEAGSLGAEQCRRLLDDAG 370 (400)
T ss_dssp ----CCCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEECCTTTCSHHHHHHHHHCHH
T ss_pred ----cCCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEcCCCCchHHHHHHHHcCHH
Confidence 345678999999999999976654 4555666778877776777889999998864
No 46
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.10 E-value=3.2e-10 Score=118.38 Aligned_cols=260 Identities=10% Similarity=-0.034 Sum_probs=148.6
Q ss_pred hhHHhhcCCCCCcEEEEcCCchhhhhhchHHH-HhhcCCEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEE
Q 010098 107 GDITEIIPDEEADIAVLEEPEHLTWFHHGKRW-KAKFRFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKV 185 (518)
Q Consensus 107 ~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~-~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v 185 (518)
..+.+.|++.++||++--+...... ...+ ..+..|+-.+.-. |+. ..+. .. .|.+
T Consensus 339 ~~ia~~Ir~d~IDILVdL~g~t~~~---~i~~aa~RpAPVQvs~lG-yp~---TTGl---------------~~--iDY~ 394 (631)
T 3q3e_A 339 EFIRSVCESNGAAIFYMPSIGMDMT---TIFASNTRLAPIQAIALG-HPA---TTHS---------------DF--IEYV 394 (631)
T ss_dssp HHHHHHHHHHTCSEEEESCCSSSHH---HHHHTTSCCSSEEEEECS-SCS---CCCC---------------TT--CCEE
T ss_pred HHHHHHHHhcCCCEEEECCCCCCch---hHHHHhCCCchheEeccC-CCc---ccCc---------------cc--CCEE
Confidence 3477888889999987754433211 1112 2344477665542 222 1111 11 3777
Q ss_pred EEeChh--hhccCCCceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEE
Q 010098 186 IRLSAA--TQEYPNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEM 263 (518)
Q Consensus 186 i~~S~~--~~~~~~~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l 263 (518)
|+-... .+.+..+.+...++.-. .+++......+...+.+.+.-.++|.+--...|..+.+++++.++.++.|+..+
T Consensus 395 i~D~~~~~~~~~ysEklirLP~~~~-~~~p~~~~p~r~~~~lp~~~G~v~Fg~fn~~~Ki~p~~l~~WarIL~~vP~s~L 473 (631)
T 3q3e_A 395 IVEDDYVGSEECFSETLLRLPKDAL-PYVPSALAPEKVDYLLRENPEVVNIGIASTTMKLNPYFLEALKAIRDRAKVKVH 473 (631)
T ss_dssp EEEGGGCCCGGGCSSEEEEECTTSS-CCCCCTTCCSSCCCCCCSCCSEEEEEEEECSTTCCHHHHHHHHHHHHHCSSEEE
T ss_pred EeCCCCCCcccCceeeEEECCCCcc-ccCCcccCCccccccCCcCCCeEEEEECCccccCCHHHHHHHHHHHHhCCCcEE
Confidence 765411 12222223333321110 111111111122334444312333444334689999999999999999998766
Q ss_pred E--EEeCCCC-hHHHHHHHHHcCC--eEEEeCCCCChH--HHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-
Q 010098 264 D--LYGNGED-FDQIQRAAKKLKL--VVRVYPGRDHAD--PIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS- 335 (518)
Q Consensus 264 ~--ivG~g~~-~~~l~~~~~~~~l--~v~~~~~~~~~~--~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~- 335 (518)
. ++|.++. .+.+.+.+.+.|+ .+.|.+..+..+ ..|+.+|+|+.|+.+.+ |++.+|||+||+|||+...++
T Consensus 474 ~l~~~g~~~g~~~~~~~~~~~~GI~~Rv~F~g~~p~~e~la~y~~aDIfLDpfpy~G-gtTtlEALwmGVPVVTl~G~~~ 552 (631)
T 3q3e_A 474 FHFALGQSNGITHPYVERFIKSYLGDSATAHPHSPYHQYLRILHNCDMMVNPFPFGN-TNGIIDMVTLGLVGVCKTGAEV 552 (631)
T ss_dssp EEEEESSCCGGGHHHHHHHHHHHHGGGEEEECCCCHHHHHHHHHTCSEEECCSSSCC-SHHHHHHHHTTCCEEEECCSSH
T ss_pred EEEecCCCchhhHHHHHHHHHcCCCccEEEcCCCCHHHHHHHHhcCcEEEeCCcccC-ChHHHHHHHcCCCEEeccCCcH
Confidence 4 3564322 2333333445565 366666544333 77899999999997655 999999999999999986654
Q ss_pred cccc------ccCCcEE-eeCCHHHHHHHHHHHHhCCCC--CCChHHHhcC----CHHHHHHHHHHHHHh
Q 010098 336 NDFF------KQFPNCR-TYDGRNGFVEATLKALAEEPA--QPTDAQTHQL----SWESATERFLQVAEL 392 (518)
Q Consensus 336 ~e~i------~~~~~g~-~~~d~~~l~~~i~~ll~~~~~--~l~~~~~~~~----sw~~~~~~~~~~y~~ 392 (518)
..-+ .-|-..+ +.+|.+++++...++.+|++. +++++.+++. -|+...++|.+.|+.
T Consensus 553 asRvgaSlL~~~GLpE~LIA~d~eeYv~~Av~La~D~~~l~~LR~~Lr~~~~~spLFd~~~~~~e~~ye~ 622 (631)
T 3q3e_A 553 HEHIDEGLFKRLGLPEWLIANTVDEYVERAVRLAENHQERLELRRYIIENNGLNTLFTGDPRPMGQVFLE 622 (631)
T ss_dssp HHHHHHHHHHHTTCCGGGEESSHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCHHHHTCSCCTHHHHHHHH
T ss_pred HHHhHHHHHHhcCCCcceecCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhCCCcchhHHHHHHHHHH
Confidence 2222 1344453 678999999999999999886 6666655211 122344555555553
No 47
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=98.83 E-value=7.2e-09 Score=91.85 Aligned_cols=121 Identities=15% Similarity=0.132 Sum_probs=90.4
Q ss_pred ccEEEEEEeec---ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHH--hhcC
Q 010098 229 TKGAYYIGRMV---WSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIF--HDYK 303 (518)
Q Consensus 229 ~~~il~vGr~~---~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~--~~ad 303 (518)
..+++++|++. ..|.+..+++++.+ . +.++++++++...+ .+.-++++.+..++ .+++ ..||
T Consensus 22 ~~vlv~~Gs~~~~~~~~~~~~~~~al~~----~-~~~~~~~~g~~~~~-------~~~~~v~~~~~~~~-~~~l~~~~ad 88 (170)
T 2o6l_A 22 GVVVFSLGSMVSNMTEERANVIASALAQ----I-PQKVLWRFDGNKPD-------TLGLNTRLYKWIPQ-NDLLGHPKTR 88 (170)
T ss_dssp CEEEEECCSCCTTCCHHHHHHHHHHHTT----S-SSEEEEECCSSCCT-------TCCTTEEEESSCCH-HHHHTSTTEE
T ss_pred CEEEEECCCCcccCCHHHHHHHHHHHHh----C-CCeEEEEECCcCcc-------cCCCcEEEecCCCH-HHHhcCCCcC
Confidence 46788899985 56777788887743 2 36788877665432 22335777776655 6777 8999
Q ss_pred eeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----ccccccCCcEEeeC----CHHHHHHHHHHHHhCCC
Q 010098 304 VFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEP 366 (518)
Q Consensus 304 v~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~~~~g~~~~----d~~~l~~~i~~ll~~~~ 366 (518)
++|.. +.+.+++|||++|+|+|+.+..+ .+.+.+...|+.++ ++++++++|.++++|++
T Consensus 89 ~~I~~----~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~ 156 (170)
T 2o6l_A 89 AFITH----GGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVINDPS 156 (170)
T ss_dssp EEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCHH
T ss_pred EEEEc----CCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHcCHH
Confidence 99964 34699999999999999998753 56677778888864 88999999999998753
No 48
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=98.82 E-value=2.6e-08 Score=106.24 Aligned_cols=168 Identities=14% Similarity=0.023 Sum_probs=117.4
Q ss_pred CCcccEEEEEEeecccCCHHH-HHHHHHHHHH--hc-----CCcEEEEEeCCCCh--HH------HHHHHH------HcC
Q 010098 226 KAFTKGAYYIGRMVWSKGYEE-LLGLLNIYHK--EL-----AGLEMDLYGNGEDF--DQ------IQRAAK------KLK 283 (518)
Q Consensus 226 ~~~~~~il~vGr~~~~Kg~~~-ll~a~~~l~~--~~-----~~~~l~ivG~g~~~--~~------l~~~~~------~~~ 283 (518)
+++.+.++++.|+..+|+.++ ++..+.++.+ .. .++++++.|.+... .. +...++ +.+
T Consensus 523 dpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~Dp~~~ 602 (796)
T 1l5w_A 523 NPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVG 602 (796)
T ss_dssp CTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTG
T ss_pred CCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCChhHHHHHHHHHHHHHHHHHhccccccC
Confidence 466889999999999999999 8888877754 12 35899999987642 22 444444 333
Q ss_pred C--eEEEeCCCCCh--HHHHhhcCeeEecCC--CCCCchHHHHHHHcCCeEEeeCCCC-cccccc--CCcEEeeC-CHHH
Q 010098 284 L--VVRVYPGRDHA--DPIFHDYKVFLNPST--TDVVCTATAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD-GRNG 353 (518)
Q Consensus 284 l--~v~~~~~~~~~--~~l~~~adv~v~pS~--~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~--~~~g~~~~-d~~~ 353 (518)
- .+.|...++.. +.++..||++.+||+ .|..|+.=+=||..|.+.|++-.|. .|+.+. ..||+++. ++++
T Consensus 603 ~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~NgF~FG~~~~e 682 (796)
T 1l5w_A 603 DKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVEQ 682 (796)
T ss_dssp GGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECSCCHHH
T ss_pred CceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeeecCcCCeeeehhhccCCCcEEEecCCHHH
Confidence 3 46666665533 389999999999999 9999999999999999999887776 555443 47999986 6666
Q ss_pred HHHHHHH------HH-hCCCC-CCChHHH-hcCCHHHHHHHHHHHHHhcC
Q 010098 354 FVEATLK------AL-AEEPA-QPTDAQT-HQLSWESATERFLQVAELVG 394 (518)
Q Consensus 354 l~~~i~~------ll-~~~~~-~l~~~~~-~~~sw~~~~~~~~~~y~~~~ 394 (518)
+.+.-.. +. .++.. ++-++.. ..|||+.. +.|.++|+...
T Consensus 683 v~~l~~~~y~a~~~y~~~~~~~~vvd~~~~g~fs~~~~-~~y~~Ly~~L~ 731 (796)
T 1l5w_A 683 VKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDK-HAFDQMLHSIG 731 (796)
T ss_dssp HHHHHHHCCCHHHHHHHCHHHHHHHHHHHHTTTTTTCT-TTTHHHHHHTS
T ss_pred HHHHHHcccCHHHHhhcCHHHHHHHHHHHcCCCCCCcH-HHHHHHHHHHh
Confidence 6532211 11 22211 2222222 78888875 77888888654
No 49
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.81 E-value=1.3e-07 Score=96.35 Aligned_cols=121 Identities=8% Similarity=-0.050 Sum_probs=83.2
Q ss_pred ccEEEEEEeec---ccCCHHHHHHHHHHHHHhcCCcEEEEE-eCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCe
Q 010098 229 TKGAYYIGRMV---WSKGYEELLGLLNIYHKELAGLEMDLY-GNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKV 304 (518)
Q Consensus 229 ~~~il~vGr~~---~~Kg~~~ll~a~~~l~~~~~~~~l~iv-G~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv 304 (518)
..++++.|++. ..+.++.+++++..+ +.+++++ |.+... . ..+.-++.+.+.. +..++|..||+
T Consensus 238 ~~v~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~~~--~----~~~~~~v~~~~~~-~~~~ll~~~d~ 305 (416)
T 1rrv_A 238 PPVHIGFGSSSGRGIADAAKVAVEAIRAQ-----GRRVILSRGWTELV--L----PDDRDDCFAIDEV-NFQALFRRVAA 305 (416)
T ss_dssp CCEEECCTTCCSHHHHHHHHHHHHHHHHT-----TCCEEEECTTTTCC--C----SCCCTTEEEESSC-CHHHHGGGSSE
T ss_pred CeEEEecCCCCccChHHHHHHHHHHHHHC-----CCeEEEEeCCcccc--c----cCCCCCEEEeccC-ChHHHhccCCE
Confidence 45667778874 456667777777543 3566665 654321 1 1222345666554 46789999999
Q ss_pred eEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----ccccccCCcEEeeC----CHHHHHHHHHHHHhCCC
Q 010098 305 FLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEP 366 (518)
Q Consensus 305 ~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~~~~g~~~~----d~~~l~~~i~~ll~~~~ 366 (518)
+|.- +-.+++.||+++|+|+|+....+ .+.+.+...|...+ ++++++++|.++ +|++
T Consensus 306 ~v~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~ 371 (416)
T 1rrv_A 306 VIHH----GSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTV-LAPE 371 (416)
T ss_dssp EEEC----CCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHH-TSHH
T ss_pred EEec----CChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCCCCCCCHHHHHHHHHHh-hCHH
Confidence 9963 34679999999999999987643 34556666777652 889999999999 7754
No 50
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=98.80 E-value=8.3e-08 Score=102.38 Aligned_cols=167 Identities=13% Similarity=0.051 Sum_probs=117.3
Q ss_pred CCcccEEEEEEeecccCCHHH-HHHHHHHHHH--hc-----CCcEEEEEeCCCC--hHH------HHHHHH------HcC
Q 010098 226 KAFTKGAYYIGRMVWSKGYEE-LLGLLNIYHK--EL-----AGLEMDLYGNGED--FDQ------IQRAAK------KLK 283 (518)
Q Consensus 226 ~~~~~~il~vGr~~~~Kg~~~-ll~a~~~l~~--~~-----~~~~l~ivG~g~~--~~~------l~~~~~------~~~ 283 (518)
+++.+.++++.|+..+|+.++ ++..+.++.+ +. .++++++.|.+.. ... +...++ +.+
T Consensus 513 dpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~dp~~~ 592 (796)
T 2c4m_A 513 DPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAPGYVRAKAIIKLINSIADLVNNDPEVS 592 (796)
T ss_dssp CTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTT
T ss_pred CCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCHhHHHHHHHHHHHHHHHHHhccccccC
Confidence 566889999999999999999 8888887764 33 2589999998764 222 444444 344
Q ss_pred C--eEEEeCCCCCh--HHHHhhcCeeEecCC--CCCCchHHHHHHHcCCeEEeeCCCC-cccccc--CCcEEeeC----C
Q 010098 284 L--VVRVYPGRDHA--DPIFHDYKVFLNPST--TDVVCTATAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD----G 350 (518)
Q Consensus 284 l--~v~~~~~~~~~--~~l~~~adv~v~pS~--~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~--~~~g~~~~----d 350 (518)
- .+.|...++.. +.++..||++.+||+ .|..|+.=+=||..|.+.|++-.|. .|+.+. ..||+++. +
T Consensus 593 ~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~NgF~FG~~~~e 672 (796)
T 2c4m_A 593 PLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDGANVEIVDSVGEENAYIFGARVEE 672 (796)
T ss_dssp TTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEESSTHHHHHHHHHCGGGSEEESCCTTT
T ss_pred CceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEEeccCCeEeehhhhcCCCcEEEecCchhh
Confidence 3 56777765533 389999999999999 9999999999999999999987776 555433 47999974 4
Q ss_pred HHHHHHH---HHHHHhCCCC-CCChHHH-hcCCHHHHHHHHHHHHHhc
Q 010098 351 RNGFVEA---TLKALAEEPA-QPTDAQT-HQLSWESATERFLQVAELV 393 (518)
Q Consensus 351 ~~~l~~~---i~~ll~~~~~-~l~~~~~-~~~sw~~~~~~~~~~y~~~ 393 (518)
+.++... ..-.-+++.. ++-+++. ..|||+.. ..|.++|+..
T Consensus 673 v~~l~~~y~a~~~y~~~~~~~~vvd~~~~g~fs~~~~-~~y~~Ly~~L 719 (796)
T 2c4m_A 673 LPALRESYKPYELYETVPGLKRALDALDNGTLNDNNS-GLFYDLKHSL 719 (796)
T ss_dssp HHHHHHTCCHHHHHHHSTTHHHHHHTTTSSSSCCTTC-CHHHHHHHHH
T ss_pred HHHHHHhhChHHHhhcCHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHH
Confidence 4444332 2222233321 1111222 68999876 7788888865
No 51
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.80 E-value=5.4e-08 Score=99.31 Aligned_cols=121 Identities=9% Similarity=-0.022 Sum_probs=83.2
Q ss_pred ccEEEEEEee-cccCCHHHHHHHHHHHHHhcCCcEEEEE-eCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeE
Q 010098 229 TKGAYYIGRM-VWSKGYEELLGLLNIYHKELAGLEMDLY-GNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFL 306 (518)
Q Consensus 229 ~~~il~vGr~-~~~Kg~~~ll~a~~~l~~~~~~~~l~iv-G~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v 306 (518)
..++++.|++ ...+..+.+++++..+ +.+++++ |.+... . ..+.-++.+.+..+ ..+++..||+||
T Consensus 239 ~~v~v~~Gs~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~~~--~----~~~~~~v~~~~~~~-~~~~l~~~d~~v 306 (415)
T 1iir_A 239 PPVYLGFGSLGAPADAVRVAIDAIRAH-----GRRVILSRGWADLV--L----PDDGADCFAIGEVN-HQVLFGRVAAVI 306 (415)
T ss_dssp CCEEEECC---CCHHHHHHHHHHHHHT-----TCCEEECTTCTTCC--C----SSCGGGEEECSSCC-HHHHGGGSSEEE
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHC-----CCeEEEEeCCCccc--c----cCCCCCEEEeCcCC-hHHHHhhCCEEE
Confidence 4577788998 4777788888888653 2455554 654322 1 11222356665554 467899999999
Q ss_pred ecCCCCCCchHHHHHHHcCCeEEeeCCCC-----ccccccCCcEEeeC----CHHHHHHHHHHHHhCCC
Q 010098 307 NPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEP 366 (518)
Q Consensus 307 ~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~~~~g~~~~----d~~~l~~~i~~ll~~~~ 366 (518)
..+ -.++++|||++|+|+|+....+ .+.+.+...|+..+ ++++++++|.++ +|++
T Consensus 307 ~~~----G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~ 370 (415)
T 1iir_A 307 HHG----GAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATA-LTPE 370 (415)
T ss_dssp ECC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHH-TSHH
T ss_pred eCC----ChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccCCcCCCCHHHHHHHHHHH-cCHH
Confidence 643 3479999999999999997754 45566667777753 889999999999 7654
No 52
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=98.47 E-value=2.8e-06 Score=81.28 Aligned_cols=187 Identities=11% Similarity=0.092 Sum_probs=105.1
Q ss_pred hHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcCCEEEEEeCChhhhhhhhcchHHHHHHHHHHHHHHhhhhccEEEE
Q 010098 108 DITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIR 187 (518)
Q Consensus 108 ~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~ 187 (518)
++.+.+++.++|++++-.......+ -..++...+..+..+- +... ..+||.+|-
T Consensus 60 ~~~~~l~~~~~d~lIvD~Y~~~~~~--~~~lk~~~~~~i~~iD-D~~~-----------------------~~~~Dllin 113 (282)
T 3hbm_A 60 ELINLIKEEKFELLIIDHYGISVDD--EKLIKLETGVKILSFD-DEIK-----------------------PHHCDILLN 113 (282)
T ss_dssp HHHHHHHHHTCSEEEEECTTCCHHH--HHHHHHHHCCEEEEEC-SSCC-----------------------CCCCSEEEE
T ss_pred HHHHHHHhCCCCEEEEECCCCCHHH--HHHHHHhcCcEEEEEe-cCCC-----------------------cccCCEEEe
Confidence 3556666678999888665433222 1224333343443443 2211 013899999
Q ss_pred eChhhh--ccCC---CceecccccCCCCcCcchhhHHHhhcCCCCcccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcE
Q 010098 188 LSAATQ--EYPN---SIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLE 262 (518)
Q Consensus 188 ~S~~~~--~~~~---~~~~~~~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~ 262 (518)
.+.... .|.. .......|.+...+.+. .....+........+++++|..+...-...+++++. + ... -
T Consensus 114 ~~~~~~~~~Y~~~~p~~~~~l~G~~Y~~lR~e--F~~~~~~~r~~~~~ILv~~GG~d~~~l~~~vl~~L~---~-~~~-i 186 (282)
T 3hbm_A 114 VNAYAKASDYEGLVPFKCEVRCGFSYALIREE--FYQEAKENRKKKYDFFICMGGTDIKNLSLQIASELP---K-TKI-I 186 (282)
T ss_dssp CSTTCCGGGGTTTCC-CCEEEESGGGCCCCHH--HHHHTTCCCCCCEEEEEECCSCCTTCHHHHHHHHSC---T-TSC-E
T ss_pred CCcccchhhccccCCCCCeEeeCCcccccCHH--HHHhhhhccccCCeEEEEECCCchhhHHHHHHHHhh---c-CCC-E
Confidence 874322 2321 11111224433222211 111111111222456667887665543445555542 2 223 3
Q ss_pred EEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 263 MDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 263 l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
.++.|.+.. .+++++.+++.+ ++++++..+++.++|+.||+.|.+. |+++.|++++|+|.|.-..
T Consensus 187 ~vv~G~~~~~~~~l~~~~~~~~-~v~v~~~~~~m~~~m~~aDlvI~~g-----G~T~~E~~~~g~P~i~ip~ 252 (282)
T 3hbm_A 187 SIATSSSNPNLKKLQKFAKLHN-NIRLFIDHENIAKLMNESNKLIISA-----SSLVNEALLLKANFKAICY 252 (282)
T ss_dssp EEEECTTCTTHHHHHHHHHTCS-SEEEEESCSCHHHHHHTEEEEEEES-----SHHHHHHHHTTCCEEEECC
T ss_pred EEEECCCchHHHHHHHHHhhCC-CEEEEeCHHHHHHHHHHCCEEEECC-----cHHHHHHHHcCCCEEEEeC
Confidence 455677654 577777766544 6888889999999999999999842 6899999999999988754
No 53
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=98.25 E-value=3.2e-06 Score=90.62 Aligned_cols=166 Identities=11% Similarity=0.062 Sum_probs=114.7
Q ss_pred CCcccEEEEEEeecccCCHHHH-HHHHHHHHH--hcC-----CcEEEEEeCCCC--hHH------HHHHHHHc------C
Q 010098 226 KAFTKGAYYIGRMVWSKGYEEL-LGLLNIYHK--ELA-----GLEMDLYGNGED--FDQ------IQRAAKKL------K 283 (518)
Q Consensus 226 ~~~~~~il~vGr~~~~Kg~~~l-l~a~~~l~~--~~~-----~~~l~ivG~g~~--~~~------l~~~~~~~------~ 283 (518)
+++.+.++++.|+..+|+.+++ +..+.++.+ ..| +.++++.|.+.. ... +.+.++.. +
T Consensus 547 dpd~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIkli~~va~~in~Dp~v~ 626 (824)
T 2gj4_A 547 NPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVG 626 (824)
T ss_dssp CTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCTTTG
T ss_pred CCCcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEEEEEEeCCHhHHHHHHHHHHHHHHHHHhccCcccC
Confidence 4668899999999999999997 888777742 333 478999998764 222 44555533 2
Q ss_pred --CeEEEeCCCCCh--HHHHhhcCeeEecCC--CCCCchHHHHHHHcCCeEEeeCCCC-ccccc--cCCcEEeeC-CHHH
Q 010098 284 --LVVRVYPGRDHA--DPIFHDYKVFLNPST--TDVVCTATAEALAMGKIVVCANHPS-NDFFK--QFPNCRTYD-GRNG 353 (518)
Q Consensus 284 --l~v~~~~~~~~~--~~l~~~adv~v~pS~--~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~--~~~~g~~~~-d~~~ 353 (518)
+.+.|...++.. +.++..||++.+||+ .|..|+.=+=||..|.+.|++-.|. .|+.+ ...|||++. ..++
T Consensus 627 ~~lKVvFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDGanvEi~e~vG~~Ngf~FG~~~~e 706 (824)
T 2gj4_A 627 DRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVED 706 (824)
T ss_dssp GGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECSCCHHH
T ss_pred CceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEecCccchhhhccCCCCEEEeCCcHHH
Confidence 256677665533 389999999999999 9999999999999999999998776 56654 467899986 5555
Q ss_pred HHHHHHH-------HHhCCCC--CCChHHH-hcCCHHHHHHHHHHHHHhc
Q 010098 354 FVEATLK-------ALAEEPA--QPTDAQT-HQLSWESATERFLQVAELV 393 (518)
Q Consensus 354 l~~~i~~-------ll~~~~~--~l~~~~~-~~~sw~~~~~~~~~~y~~~ 393 (518)
+ .++.+ +.++.+. ++-++.. ..|||+.. ++|.++|+..
T Consensus 707 v-~~l~~~~~~a~~~Y~~~~~l~~v~d~i~~g~fs~~~~-~~y~~ly~~l 754 (824)
T 2gj4_A 707 V-DRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQP-DLFKDIVNML 754 (824)
T ss_dssp H-HHHHHHCCCHHHHHHHCHHHHHHHHHHHHTTTCTTST-TTTHHHHHHH
T ss_pred H-HHHHHcCCCHHHHhcCCHHHHHHHHHHHhCCCCCCCh-HHHHHHHHHH
Confidence 5 44321 1111111 1111222 67888776 6677777754
No 54
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.05 E-value=2.5e-05 Score=84.97 Aligned_cols=171 Identities=12% Similarity=-0.065 Sum_probs=119.3
Q ss_pred HhhcCCCCcccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-hHHHHHHHHHcCCe---EEEeCCCC--
Q 010098 220 QQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLV---VRVYPGRD-- 293 (518)
Q Consensus 220 ~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l~---v~~~~~~~-- 293 (518)
+...+++++..+ |.+--...|=-+..++++.++.++.|+.+|++...... .+.+++.+++.|+. +.|.+...
T Consensus 514 R~~~gLp~~~v~--f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~~~~~l~~~~~~~gi~~~r~~f~~~~~~~ 591 (723)
T 4gyw_A 514 RSQYGLPEDAIV--YCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKE 591 (723)
T ss_dssp GGGGTCCTTSEE--EECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTGGGHHHHHHHHHHTTCCGGGEEEEECCCHH
T ss_pred hhhcCCCCCCEE--EEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHHHHHHHhcCCCcCeEEECCCCCHH
Confidence 445667765544 33333457778899999999999999999999876544 57788888888886 55544333
Q ss_pred ChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC------cccccc-CCcEEeeCCHHHHHHHHHHHHhCCC
Q 010098 294 HADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS------NDFFKQ-FPNCRTYDGRNGFVEATLKALAEEP 366 (518)
Q Consensus 294 ~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~------~e~i~~-~~~g~~~~d~~~l~~~i~~ll~~~~ 366 (518)
+.-..|+.+|+++-|--+ +-+++..||+.||+|||+-.... ..++.. |-.-++..|.++..+...++.+|++
T Consensus 592 ~~l~~~~~~Di~LDt~p~-~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia~~~~~Y~~~a~~la~d~~ 670 (723)
T 4gyw_A 592 EHVRRGQLADVCLDTPLC-NGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKNRQEYEDIAVKLGTDLE 670 (723)
T ss_dssp HHHHHGGGCSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBCSSHHHHHHHHHHHHHCHH
T ss_pred HHHHHhCCCeEEeCCCCc-CCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccccCCHHHHHHHHHHHhcCHH
Confidence 222667789999988666 44899999999999999975432 122211 2233456799999999999999877
Q ss_pred C--CCChHHH------hcCCHHHHHHHHHHHHHhc
Q 010098 367 A--QPTDAQT------HQLSWESATERFLQVAELV 393 (518)
Q Consensus 367 ~--~l~~~~~------~~~sw~~~~~~~~~~y~~~ 393 (518)
. .+++.-+ .-|+-...++.+++.|+..
T Consensus 671 ~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~~ 705 (723)
T 4gyw_A 671 YLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQM 705 (723)
T ss_dssp HHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHHH
Confidence 5 3333222 3466677777777777754
No 55
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=97.59 E-value=0.014 Score=60.26 Aligned_cols=75 Identities=8% Similarity=-0.034 Sum_probs=52.1
Q ss_pred eCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----cccc-ccCCcEEeeC-------CHHHHH
Q 010098 289 YPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFF-KQFPNCRTYD-------GRNGFV 355 (518)
Q Consensus 289 ~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i-~~~~~g~~~~-------d~~~l~ 355 (518)
..+.-...++++.+++-++-++ +--++++||+++|+|+|+-...+ ...+ +.-..|...+ +.+++.
T Consensus 343 v~~w~Pq~~vL~h~~v~~fvtH--gG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~~~~~~~l~ 420 (480)
T 2vch_A 343 IPFWAPQAQVLAHPSTGGFLTH--CGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVA 420 (480)
T ss_dssp EESCCCHHHHHHSTTEEEEEEC--CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSCCCHHHHH
T ss_pred EeCccCHHHHhCCCCcCeEEec--ccchhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccCCccCHHHHH
Confidence 3334455689998885333232 34678999999999999997754 3343 4555666531 689999
Q ss_pred HHHHHHHhCC
Q 010098 356 EATLKALAEE 365 (518)
Q Consensus 356 ~~i~~ll~~~ 365 (518)
++|.++++++
T Consensus 421 ~av~~vl~~~ 430 (480)
T 2vch_A 421 RVVKGLMEGE 430 (480)
T ss_dssp HHHHHHHTST
T ss_pred HHHHHHhcCc
Confidence 9999999753
No 56
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=97.47 E-value=0.006 Score=59.86 Aligned_cols=98 Identities=17% Similarity=0.203 Sum_probs=64.1
Q ss_pred ccEEEEEEe-ecccCCHH--HHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcC----CeEEEeCCC---CChHHH
Q 010098 229 TKGAYYIGR-MVWSKGYE--ELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLK----LVVRVYPGR---DHADPI 298 (518)
Q Consensus 229 ~~~il~vGr-~~~~Kg~~--~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~----l~v~~~~~~---~~~~~l 298 (518)
..+++..|. ..+.|.+. .+.+++..+.++ +++++++|+..+.+..++..+..+ ..+..+.+. .+...+
T Consensus 181 ~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~--~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sl~e~~al 258 (348)
T 1psw_A 181 PMIGFCPGAEFGPAKRWPHYHYAELAKQLIDE--GYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVIL 258 (348)
T ss_dssp CEEEEECCCTTCGGGSCCHHHHHHHHHHHHHT--TCEEEECCCGGGHHHHHHHHTTSCHHHHTTEEECTTTSCHHHHHHH
T ss_pred cEEEEECCCCccccCCCCHHHHHHHHHHHHHC--CCeEEEEeChhhHHHHHHHHHhhhhccccceEeccCcCCHHHHHHH
Confidence 345566676 44556654 888888888765 789999987665555555544332 123333333 344588
Q ss_pred HhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 299 FHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 299 ~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
++.||++|.... |..-+ |.|+|+|+|+--.
T Consensus 259 i~~a~l~I~~Ds----g~~Hl-Aaa~g~P~v~lfg 288 (348)
T 1psw_A 259 IAACKAIVTNDS----GLMHV-AAALNRPLVALYG 288 (348)
T ss_dssp HHTSSEEEEESS----HHHHH-HHHTTCCEEEEES
T ss_pred HHhCCEEEecCC----HHHHH-HHHcCCCEEEEEC
Confidence 999999998752 44434 9999999998643
No 57
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.01 E-value=0.035 Score=54.59 Aligned_cols=156 Identities=12% Similarity=0.147 Sum_probs=89.6
Q ss_pred CCCCccc-EEEEEEeecccCCH--HHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCC---ChHH
Q 010098 224 GNKAFTK-GAYYIGRMVWSKGY--EELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRD---HADP 297 (518)
Q Consensus 224 ~~~~~~~-~il~vGr~~~~Kg~--~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~---~~~~ 297 (518)
+...+.+ +++..|.-...|.+ +.+.+++..+.++ +.+++++|+..+.+..++..+..+..+..+.+.. +...
T Consensus 180 g~~~~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~--g~~vvl~g~~~e~~~~~~i~~~~~~~~~~l~g~~sl~e~~a 257 (349)
T 3tov_A 180 GLTDTDILIGFNIGSAVPEKRWPAERFAHVADYFGRL--GYKTVFFGGPMDLEMVQPVVEQMETKPIVATGKFQLGPLAA 257 (349)
T ss_dssp TCCTTCCEEEEECCCSSGGGCCCHHHHHHHHHHHHHH--TCEEEECCCTTTHHHHHHHHHTCSSCCEECTTCCCHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCccCCCCHHHHHHHHHHHHhC--CCeEEEEeCcchHHHHHHHHHhcccccEEeeCCCCHHHHHH
Confidence 4433334 45566654455654 5788888888766 6888889877667777777666654444443333 4448
Q ss_pred HHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-cccc-ccCCcEEeeCCHHHHHHHHHHHHhCCCCCCC---hH
Q 010098 298 IFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFF-KQFPNCRTYDGRNGFVEATLKALAEEPAQPT---DA 372 (518)
Q Consensus 298 l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i-~~~~~g~~~~d~~~l~~~i~~ll~~~~~~l~---~~ 372 (518)
+++.||++|..-. |..-+ |.|+|+|+|+--.+. +... .-+.+..+........ +. ........ ..
T Consensus 258 li~~a~~~i~~Ds----G~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~vl~~~~~C~-C~----~~~~~~C~~~~~~ 327 (349)
T 3tov_A 258 AMNRCNLLITNDS----GPMHV-GISQGVPIVALYGPSNPFFYGPYQAHAIVLETMDSYE-IG----KSMKKIIKEGNYK 327 (349)
T ss_dssp HHHTCSEEEEESS----HHHHH-HHTTTCCEEEECSSCCHHHHSCTTCSEEEECHHHHHH-HH----HHTTCCCCGGGCS
T ss_pred HHHhCCEEEECCC----CHHHH-HHhcCCCEEEEECCCCccccCCCCCCeEEEeCCCCcC-cc----CCccCCCCCCccc
Confidence 8999999997632 55555 999999999975444 3322 2233344443222222 11 11111111 11
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 010098 373 QTHQLSWESATERFLQVAE 391 (518)
Q Consensus 373 ~~~~~sw~~~~~~~~~~y~ 391 (518)
..+..+-+.+.+...+..+
T Consensus 328 Cm~~I~~~~V~~a~~~lL~ 346 (349)
T 3tov_A 328 GLSVISEEQVIKAAETLLL 346 (349)
T ss_dssp TTTTSCHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHh
Confidence 2246677777777666554
No 58
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=96.55 E-value=0.0041 Score=56.89 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=39.0
Q ss_pred CCeEEEeCCCCChHHHHh-hcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCC
Q 010098 283 KLVVRVYPGRDHADPIFH-DYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP 334 (518)
Q Consensus 283 ~l~v~~~~~~~~~~~l~~-~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g 334 (518)
+..+.++...+++.++|+ .||++|.= +-..+++|++++|+|.|.-..+
T Consensus 113 ~~~v~v~~f~~~m~~~l~~~AdlvIsh----aGagTv~Eal~~G~P~IvVP~~ 161 (224)
T 2jzc_A 113 KLKVIGFDFSTKMQSIIRDYSDLVISH----AGTGSILDSLRLNKPLIVCVND 161 (224)
T ss_dssp SSEEEECCSSSSHHHHHHHHCSCEEES----SCHHHHHHHHHTTCCCCEECCS
T ss_pred CceEEEeeccchHHHHHHhcCCEEEEC----CcHHHHHHHHHhCCCEEEEcCc
Confidence 445667777789999999 99999953 3477999999999999887654
No 59
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=96.28 E-value=0.0079 Score=61.61 Aligned_cols=126 Identities=11% Similarity=0.095 Sum_probs=76.7
Q ss_pred ccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEE-EeCCCC---hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hc
Q 010098 229 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDL-YGNGED---FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DY 302 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i-vG~g~~---~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~a 302 (518)
..+++..|..... ..+.+.+.+..+... +.++++ +|.... .+.+.+ +..-++.+.+. -+..+++. .+
T Consensus 272 ~vv~vs~GS~~~~-~~~~~~~~~~~l~~~--~~~~lw~~~~~~~~~l~~~~~~---~~~~~~~v~~w-~pq~~vL~h~~~ 344 (456)
T 2c1x_A 272 SVVYISFGTVTTP-PPAEVVALSEALEAS--RVPFIWSLRDKARVHLPEGFLE---KTRGYGMVVPW-APQAEVLAHEAV 344 (456)
T ss_dssp CEEEEECCSSCCC-CHHHHHHHHHHHHHH--TCCEEEECCGGGGGGSCTTHHH---HHTTTEEEESC-CCHHHHHTSTTE
T ss_pred ceEEEecCccccC-CHHHHHHHHHHHHhc--CCeEEEEECCcchhhCCHHHHh---hcCCceEEecC-CCHHHHhcCCcC
Confidence 3455566666543 334444444444333 345544 443221 122222 22234555553 34457888 66
Q ss_pred CeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----ccccccC-CcEEeeC----CHHHHHHHHHHHHhCC
Q 010098 303 KVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQF-PNCRTYD----GRNGFVEATLKALAEE 365 (518)
Q Consensus 303 dv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~~-~~g~~~~----d~~~l~~~i~~ll~~~ 365 (518)
|+||. -+-.++++||+++|+|+|+-...+ ...+.+. ..|...+ +.+++.++|.++++|+
T Consensus 345 ~~fvt----h~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~~~~~~~~~l~~~i~~ll~~~ 413 (456)
T 2c1x_A 345 GAFVT----HCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQE 413 (456)
T ss_dssp EEEEE----CCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGGGSCCHHHHHHHHHHHHHSH
T ss_pred CEEEe----cCCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEecCCCcCHHHHHHHHHHHHCCC
Confidence 78883 345789999999999999997754 4555555 6666653 7899999999999875
No 60
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=95.97 E-value=0.024 Score=57.75 Aligned_cols=131 Identities=11% Similarity=0.034 Sum_probs=77.5
Q ss_pred ccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHH-HHHHHHcCCeEEEeCCCCChHHHHhhcCeeEe
Q 010098 229 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQI-QRAAKKLKLVVRVYPGRDHADPIFHDYKVFLN 307 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l-~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~ 307 (518)
..+.+..|.+... ..+.+.+.+..+.+. +.+++++-+....+.+ +...++..-++.+.+ .-...++++.+++-++
T Consensus 274 ~vVyvsfGS~~~~-~~~~~~el~~~l~~~--~~~flw~~~~~~~~~lp~~~~~~~~~~~~vv~-w~Pq~~vL~h~~v~~f 349 (454)
T 3hbf_A 274 SVVYISFGSVVTP-PPHELTALAESLEEC--GFPFIWSFRGDPKEKLPKGFLERTKTKGKIVA-WAPQVEILKHSSVGVF 349 (454)
T ss_dssp CEEEEECCSSCCC-CHHHHHHHHHHHHHH--CCCEEEECCSCHHHHSCTTHHHHTTTTEEEES-SCCHHHHHHSTTEEEE
T ss_pred ceEEEecCCCCcC-CHHHHHHHHHHHHhC--CCeEEEEeCCcchhcCCHhHHhhcCCceEEEe-eCCHHHHHhhcCcCeE
Confidence 3445566766532 344455555444443 4556555432222111 111122333455554 4455799999994333
Q ss_pred cCCCCCCchHHHHHHHcCCeEEeeCCCC-----ccccccC-CcEEeeC----CHHHHHHHHHHHHhCC
Q 010098 308 PSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQF-PNCRTYD----GRNGFVEATLKALAEE 365 (518)
Q Consensus 308 pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~~~-~~g~~~~----d~~~l~~~i~~ll~~~ 365 (518)
-++ +--++++||+++|+|+|+-...+ ...+.+. ..|+..+ +.+++.++|.++++++
T Consensus 350 vtH--~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~~~~~~~~~l~~av~~ll~~~ 415 (454)
T 3hbf_A 350 LTH--SGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKALELTMSSE 415 (454)
T ss_dssp EEC--CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECGGGSCCHHHHHHHHHHHHSSH
T ss_pred Eec--CCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEecCCCCCHHHHHHHHHHHHCCC
Confidence 333 34678999999999999987653 3445553 6666642 7899999999999763
No 61
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=95.46 E-value=0.063 Score=55.27 Aligned_cols=125 Identities=12% Similarity=0.055 Sum_probs=76.1
Q ss_pred cEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCC--------ChHHHHHHHHHcCCeEEEeCCCCChHHHHhh
Q 010098 230 KGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGE--------DFDQIQRAAKKLKLVVRVYPGRDHADPIFHD 301 (518)
Q Consensus 230 ~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~--------~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~ 301 (518)
.+++..|.+.. ...+.+.+.+..+.+. +.+++++-... ..+.+.+ +..-++.+.... ...++|+.
T Consensus 297 vv~vs~GS~~~-~~~~~~~~~~~~l~~~--~~~~l~~~~~~~~~~~~~~l~~~~~~---~~~~~~~v~~~~-pq~~~L~h 369 (482)
T 2pq6_A 297 VVYVNFGSTTV-MTPEQLLEFAWGLANC--KKSFLWIIRPDLVIGGSVIFSSEFTN---EIADRGLIASWC-PQDKVLNH 369 (482)
T ss_dssp EEEEECCSSSC-CCHHHHHHHHHHHHHT--TCEEEEECCGGGSTTTGGGSCHHHHH---HHTTTEEEESCC-CHHHHHTS
T ss_pred eEEEecCCccc-CCHHHHHHHHHHHHhc--CCcEEEEEcCCccccccccCcHhHHH---hcCCCEEEEeec-CHHHHhcC
Confidence 44555666542 3444444554444333 46666653211 1133322 223345666543 44578977
Q ss_pred cCe--eEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----ccccc-cCCcEEeeC---CHHHHHHHHHHHHhCC
Q 010098 302 YKV--FLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFK-QFPNCRTYD---GRNGFVEATLKALAEE 365 (518)
Q Consensus 302 adv--~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~i~-~~~~g~~~~---d~~~l~~~i~~ll~~~ 365 (518)
+++ ||. -+-.++++||+++|+|+|+-...+ ...+. .-..|...+ +.+++.++|.++++|+
T Consensus 370 ~~~~~~vt----h~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~l~~~i~~ll~~~ 440 (482)
T 2pq6_A 370 PSIGGFLT----HCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKREELAKLINEVIAGD 440 (482)
T ss_dssp TTEEEEEE----CCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECCSSCCHHHHHHHHHHHHTSH
T ss_pred CCCCEEEe----cCCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEECCCCCHHHHHHHHHHHHcCC
Confidence 665 663 244789999999999999998764 33343 456666654 8999999999999875
No 62
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=95.35 E-value=0.082 Score=54.09 Aligned_cols=127 Identities=8% Similarity=-0.065 Sum_probs=75.0
Q ss_pred ccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCC---ChHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcC
Q 010098 229 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGE---DFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYK 303 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~---~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~ad 303 (518)
..+++..|.+...-+.+.+.+++..+.+. +.+++++-+.. ..+.+.+.... .-++.+... -+..++|. .+|
T Consensus 277 ~vv~vs~GS~~~~~~~~~~~~~~~~l~~~--~~~~l~~~~~~~~~l~~~~~~~~~~-~~~~~v~~w-~pq~~vL~h~~~~ 352 (463)
T 2acv_A 277 SVVFLCFGSMGVSFGPSQIREIALGLKHS--GVRFLWSNSAEKKVFPEGFLEWMEL-EGKGMICGW-APQVEVLAHKAIG 352 (463)
T ss_dssp CEEEEECCSSCCCCCHHHHHHHHHHHHHH--TCEEEEECCCCGGGSCTTHHHHHHH-HCSEEEESS-CCHHHHHHSTTEE
T ss_pred ceEEEEeccccccCCHHHHHHHHHHHHhC--CCcEEEEECCCcccCChhHHHhhcc-CCCEEEEcc-CCHHHHhCCCccC
Confidence 34555667665223434444444444433 46666554322 12333322210 123455553 34456776 577
Q ss_pred eeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-----ccc-cccCCcEEee---------C-CHHHHHHHHHHHHh
Q 010098 304 VFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDF-FKQFPNCRTY---------D-GRNGFVEATLKALA 363 (518)
Q Consensus 304 v~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-----~e~-i~~~~~g~~~---------~-d~~~l~~~i~~ll~ 363 (518)
+||. -+-.++++||+++|+|+|+-...+ ... ++.-..|+.. . +.+++.++|.++++
T Consensus 353 ~fvt----h~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~~~~~~~~~~~l~~ai~~ll~ 424 (463)
T 2acv_A 353 GFVS----HCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMD 424 (463)
T ss_dssp EEEE----CCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCCTTCCCCCHHHHHHHHHHHTC
T ss_pred eEEe----cCCchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEecccCCCCccccHHHHHHHHHHHHh
Confidence 8883 344789999999999999997754 344 4555666655 1 67899999999995
No 63
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=92.69 E-value=0.92 Score=48.83 Aligned_cols=130 Identities=14% Similarity=0.087 Sum_probs=89.9
Q ss_pred CcccEEEEEEeecccCCHHH-HHHHHH---HHHHh-------------cCCcEEEEEeCCCC-h---HH----HHHHHHH
Q 010098 227 AFTKGAYYIGRMVWSKGYEE-LLGLLN---IYHKE-------------LAGLEMDLYGNGED-F---DQ----IQRAAKK 281 (518)
Q Consensus 227 ~~~~~il~vGr~~~~Kg~~~-ll~a~~---~l~~~-------------~~~~~l~ivG~g~~-~---~~----l~~~~~~ 281 (518)
++...++++-|+..+|...+ ++..+. +++.. .....+++.|.... . .. +...++.
T Consensus 598 p~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~ 677 (879)
T 1ygp_A 598 DDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADI 677 (879)
T ss_dssp GGCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHH
T ss_pred CCeeeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHH
Confidence 55778888899999999988 565544 33433 23577777776322 1 22 2223221
Q ss_pred ------cC--CeEEEeCCCC--ChHHHHhhcCeeEecCC--CCCCchHHHHHHHcCCeEEeeCCCC-cccccc--CCcEE
Q 010098 282 ------LK--LVVRVYPGRD--HADPIFHDYKVFLNPST--TDVVCTATAEALAMGKIVVCANHPS-NDFFKQ--FPNCR 346 (518)
Q Consensus 282 ------~~--l~v~~~~~~~--~~~~l~~~adv~v~pS~--~E~~~~~~lEAma~G~PVV~t~~g~-~e~i~~--~~~g~ 346 (518)
.+ +.+.|+..++ -.+.++..||+..+.|+ .|..|+.=+=+|.-|.+.|+|-.|. -|+.++ ..|++
T Consensus 678 iN~Dp~v~~~LKVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlgtlDGanvEi~e~vG~eN~f 757 (879)
T 1ygp_A 678 VNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNVF 757 (879)
T ss_dssp HTTCGGGTTSEEEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESCTHHHHHHHHHCGGGSE
T ss_pred hccChhhCCceEEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecccchhHHHHHHcCcccEE
Confidence 12 2466666544 44488999999999885 8999999999999999999998886 677654 56999
Q ss_pred eeC-CHHHHHH
Q 010098 347 TYD-GRNGFVE 356 (518)
Q Consensus 347 ~~~-d~~~l~~ 356 (518)
++. +.+++.+
T Consensus 758 iFG~~~~ev~~ 768 (879)
T 1ygp_A 758 LFGNLSENVEE 768 (879)
T ss_dssp EESCCHHHHHH
T ss_pred EccCCHHHHHH
Confidence 986 5555443
No 64
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=92.28 E-value=0.8 Score=44.01 Aligned_cols=128 Identities=13% Similarity=0.128 Sum_probs=74.8
Q ss_pred ccEEEEEEeecccCCH--HHHHHHHHHHHHhcCCcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCC--CCChHHHHhhcC
Q 010098 229 TKGAYYIGRMVWSKGY--EELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPG--RDHADPIFHDYK 303 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~--~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~--~~~~~~l~~~ad 303 (518)
..+++..|.-...|.+ +.+.+.+..+.+. ++++++.++++. .+..++..+... .+.+.+. ..+...+++.||
T Consensus 179 ~~i~l~pga~~~~k~wp~~~~~~l~~~L~~~--~~~vvl~~g~~~e~~~~~~i~~~~~-~~~l~g~~sl~el~ali~~a~ 255 (326)
T 2gt1_A 179 EYAVFLHATTRDDKHWPEEHWRELIGLLADS--GIRIKLPWGAPHEEERAKRLAEGFA-YVEVLPKMSLEGVARVLAGAK 255 (326)
T ss_dssp SEEEEECCCSSGGGSCCHHHHHHHHHHTTTT--CCEEEECCSSHHHHHHHHHHHTTCT-TEEECCCCCHHHHHHHHHTCS
T ss_pred CEEEEEeCCCCccccCCHHHHHHHHHHHHHC--CCcEEEecCCHHHHHHHHHHHhhCC-cccccCCCCHHHHHHHHHhCC
Confidence 3455666654555655 4777777777543 688888744443 333445444333 2444442 224448899999
Q ss_pred eeEecCCCCCCchHHHHHHHcCCeEEeeCCCC-cccc-ccCCcE--------EeeC-CHHHHHHHHHHHHhC
Q 010098 304 VFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFF-KQFPNC--------RTYD-GRNGFVEATLKALAE 364 (518)
Q Consensus 304 v~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~-~e~i-~~~~~g--------~~~~-d~~~l~~~i~~ll~~ 364 (518)
++|..-. |..-+ |.|+|+|+|+--.+. +... .-+... .+-+ +++++.+++.+++++
T Consensus 256 l~I~~DS----G~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~~~~~~~~cm~~I~~~~V~~~i~~~l~~ 322 (326)
T 2gt1_A 256 FVVSVDT----GLSHL-TAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPGNELSQLTANAVKQFIEENAEK 322 (326)
T ss_dssp EEEEESS----HHHHH-HHHTTCCEEEEESSSCHHHHCCCSSSEEEEECGGGCGGGCCHHHHHHHHHHTTTT
T ss_pred EEEecCC----cHHHH-HHHcCCCEEEEECCCChhhcCCCCCCceEecCCcccccCCCHHHHHHHHHHHHHH
Confidence 9997732 55555 778999999873322 1111 001111 1112 788888888888764
No 65
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=84.81 E-value=8.7 Score=41.37 Aligned_cols=171 Identities=8% Similarity=-0.092 Sum_probs=94.0
Q ss_pred ccEEEEeChhhhccCC-----C-ceecccccCC-C-CcCcc----hhhHHHhhcCCCCcccEEEEEEeecccC-------
Q 010098 182 CHKVIRLSAATQEYPN-----S-IVCNVHGVNP-K-FLEIG----EKKMEQQQNGNKAFTKGAYYIGRMVWSK------- 242 (518)
Q Consensus 182 ad~vi~~S~~~~~~~~-----~-~~~~~~GVd~-~-~~~~~----~~~~~~~~~~~~~~~~~il~vGr~~~~K------- 242 (518)
.|.+++.|+...+... . ......|..- + ++... .....+...+++.++++|+|.-+.....
T Consensus 479 ~D~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~~~~~~~~~~~~~~~~~~~kk~ILyaPT~r~~~~~~~~~~ 558 (729)
T 3l7i_A 479 WDYLISPNRYSTEIFRSAFWMDEERILEIGYPRNDVLVNRANDQEYLDEIRTHLNLPSDKKVIMYAPTWRDDEFVSKGKY 558 (729)
T ss_dssp CSEEEESSHHHHHHHHHHTCCCGGGEEESCCGGGHHHHHSTTCHHHHHHHHHHTTCCSSCEEEEECCCCCGGGCCGGGSS
T ss_pred CCEEEeCCHHHHHHHHHHhCCCcceEEEcCCCchHHHhcccchHHHHHHHHHHhCCCCCCeEEEEeeeeeCCcccccccc
Confidence 4999999987766321 1 1122234321 1 12111 1222345567777889999997654321
Q ss_pred --CHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHH--HHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHH
Q 010098 243 --GYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAA--KKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTAT 318 (518)
Q Consensus 243 --g~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~--~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~ 318 (518)
....-++.+.+.. .++..+++-.. +. +.... ..+...+.......++.+++..+|++|.= ++.++
T Consensus 559 ~~~~~~~~~~l~~~l--~~~~~li~r~H-p~---~~~~~~~~~~~~~~~~~~~~~di~~ll~~aD~lITD-----ySSv~ 627 (729)
T 3l7i_A 559 LFELKIDLDNLYKEL--GDDYVILLRMH-YL---ISNALDLSGYENFAIDVSNYNDVSELFLISDCLITD-----YSSVM 627 (729)
T ss_dssp CCCCTTCHHHHHHHH--TTTEEEEECCC-HH---HHTTCCCTTCTTTEEECTTCSCHHHHHHTCSEEEES-----SCTHH
T ss_pred ccchhhHHHHHHHHc--CCCeEEEEecC-cc---hhccccccccCCcEEeCCCCcCHHHHHHHhCEEEee-----chHHH
Confidence 1111223332221 23566666443 21 11100 01111133345667899999999999932 46689
Q ss_pred HHHHHcCCeEEeeCCCCccc----------cccCCcEEeeCCHHHHHHHHHHHHh
Q 010098 319 AEALAMGKIVVCANHPSNDF----------FKQFPNCRTYDGRNGFVEATLKALA 363 (518)
Q Consensus 319 lEAma~G~PVV~t~~g~~e~----------i~~~~~g~~~~d~~~l~~~i~~ll~ 363 (518)
+|++..++|||.....-.+. +.+..-|-++.|.+++.++|.....
T Consensus 628 fD~~~l~kPiif~~~D~~~Y~~~~rg~y~d~~~~~pg~~~~~~~eL~~~i~~~~~ 682 (729)
T 3l7i_A 628 FDYGILKRPQFFFAYDIDKYDKGLRGFYMNYMEDLPGPIYTEPYGLAKELKNLDK 682 (729)
T ss_dssp HHHGGGCCCEEEECTTTTTTTSSCCSBSSCTTSSSSSCEESSHHHHHHHHTTHHH
T ss_pred HhHHhhCCCEEEecCCHHHHhhccCCcccChhHhCCCCeECCHHHHHHHHhhhhc
Confidence 99999999999883322111 1222345556799999999987653
No 66
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=79.04 E-value=13 Score=30.62 Aligned_cols=108 Identities=6% Similarity=-0.091 Sum_probs=68.1
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHhh--cCeeEec-CCCCCCchHHHHHHH-----cCCeEEe
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNP-STTDVVCTATAEALA-----MGKIVVC 330 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~--adv~v~p-S~~E~~~~~~lEAma-----~G~PVV~ 330 (518)
..+++|+.+.+. .+.++...++.|..+.......+..+.+.. .|+++.- ...+.-|..+++.+. ..+|||.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~ 86 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVIL 86 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEE
Confidence 467777776443 456677777777665544433333344443 4665554 334556778888775 3577765
Q ss_pred e-CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC
Q 010098 331 A-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA 367 (518)
Q Consensus 331 t-~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~ 367 (518)
. .... .+.+..|..+++.. +.+++..+|..++.....
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 130 (154)
T 3gt7_A 87 LTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKR 130 (154)
T ss_dssp EECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCC
T ss_pred EECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 4 3333 45566788888864 999999999998875543
No 67
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=77.99 E-value=21 Score=28.45 Aligned_cols=106 Identities=9% Similarity=-0.030 Sum_probs=67.4
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHHc-----CCeEEe
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM-----GKIVVC 330 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~-----G~PVV~ 330 (518)
..+++|+.+.+. ...++....+.|..+.......+..+.+. ..|+++.-. ..+.-|..+++.+.. .+|||.
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 85 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVV 85 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEE
Confidence 356777776443 45666677777766554443333334443 346665543 345567788887765 678776
Q ss_pred eCCC-C----c-cccccCCcEEeeC--CHHHHHHHHHHHHhCC
Q 010098 331 ANHP-S----N-DFFKQFPNCRTYD--GRNGFVEATLKALAEE 365 (518)
Q Consensus 331 t~~g-~----~-e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~ 365 (518)
.... . . +.+..|..+++.. +.+++..+|..+++..
T Consensus 86 ~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~ 128 (140)
T 3grc_A 86 VSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNM 128 (140)
T ss_dssp ECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred EecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhc
Confidence 6443 2 2 5666778888864 9999999999988643
No 68
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=74.51 E-value=22 Score=28.32 Aligned_cols=104 Identities=8% Similarity=-0.018 Sum_probs=63.6
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHhh--cCeeEec-CCCCCCchHHHHHHHc-----CCeEEe
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNP-STTDVVCTATAEALAM-----GKIVVC 330 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~--adv~v~p-S~~E~~~~~~lEAma~-----G~PVV~ 330 (518)
..+++++.+.+. .+.+....+..|..+.......+..+.+.. .|+.+.- ...+.-|..+++.+.. .+|||.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ 86 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVM 86 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEE
Confidence 467777776443 456667777777665544433333344443 4555543 3344557778887754 467665
Q ss_pred e-CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 331 A-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 331 t-~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
. .... .+.+..|..+++.. +.+++.++|..++.
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 87 LTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp EECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 4 3332 45556667777764 89999999988764
No 69
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=74.40 E-value=16 Score=29.43 Aligned_cols=106 Identities=7% Similarity=-0.073 Sum_probs=67.3
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHHc-----CCeEEe
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM-----GKIVVC 330 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~-----G~PVV~ 330 (518)
..+++++.+.+. .+.+.......|..+.......+..+.+. ..|++|.-. ..+.-|..+++.+.. .+|||.
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ 87 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIA 87 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEE
Confidence 467888877554 46677777777765554443333334443 357666543 344567788888764 577665
Q ss_pred e-CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhCC
Q 010098 331 A-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEE 365 (518)
Q Consensus 331 t-~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~ 365 (518)
. .... .+.+..|..+++.. +.+++..+|..++...
T Consensus 88 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 129 (147)
T 2zay_A 88 LSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLL 129 (147)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 4 4333 44456788888864 8999999998887543
No 70
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=73.58 E-value=22 Score=28.35 Aligned_cols=103 Identities=10% Similarity=-0.017 Sum_probs=64.9
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh----hcCeeEec-CCCCCCchHHHHHHHc---CCeEEee
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH----DYKVFLNP-STTDVVCTATAEALAM---GKIVVCA 331 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~----~adv~v~p-S~~E~~~~~~lEAma~---G~PVV~t 331 (518)
.+++++.+.+. .+.++...+..+..+.......+..+.+. ..|+++.- ...+.-|..+++.+.. .+|||..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~l 83 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIIL 83 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEE
Confidence 56777776443 46667777777766554444444444444 45765553 3445567777666543 6777654
Q ss_pred -CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 332 -NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 332 -~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
.... .+.+..|..+++.. +.+++..+|..++.
T Consensus 84 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 122 (143)
T 3jte_A 84 TGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAIN 122 (143)
T ss_dssp ECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHH
Confidence 3333 45567788888864 89999999988775
No 71
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=73.14 E-value=26 Score=27.77 Aligned_cols=107 Identities=6% Similarity=0.036 Sum_probs=67.3
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHH-cCCe-EEEeCCCCChHHHHhh--cCeeEecC-CCCCCchHHHHHHHc-----CCeE
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKK-LKLV-VRVYPGRDHADPIFHD--YKVFLNPS-TTDVVCTATAEALAM-----GKIV 328 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~-~~l~-v~~~~~~~~~~~l~~~--adv~v~pS-~~E~~~~~~lEAma~-----G~PV 328 (518)
..+++++.+.+. ...+....+. .+.. +.......+..+.+.. .|+.+.-. ..+.-|..+++.+.. .+||
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~i 87 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIV 87 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEE
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcE
Confidence 467777776443 4566666676 6776 5544443444444443 46655543 344557778887764 5777
Q ss_pred Eee-CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhCCC
Q 010098 329 VCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEP 366 (518)
Q Consensus 329 V~t-~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~ 366 (518)
|.. .... .+.+..|..+++.. +.+++.++|..++....
T Consensus 88 i~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 88 IAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 654 3333 45566788888864 99999999999887544
No 72
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=70.61 E-value=17 Score=34.95 Aligned_cols=73 Identities=14% Similarity=0.190 Sum_probs=52.1
Q ss_pred HhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhh--cCeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 256 KELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 256 ~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~--adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
...|+++++-+.+ .+.+..++.++++++.-. +.+.+++++. .|+.+..+....-.-.+.+|+.+|++|+|=..
T Consensus 44 ~~~~~~~lvav~d-~~~~~a~~~a~~~g~~~~----y~d~~ell~~~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKP 118 (350)
T 4had_A 44 QDAENCVVTAIAS-RDLTRAREMADRFSVPHA----FGSYEEMLASDVIDAVYIPLPTSQHIEWSIKAADAGKHVVCEKP 118 (350)
T ss_dssp HHCSSEEEEEEEC-SSHHHHHHHHHHHTCSEE----ESSHHHHHHCSSCSEEEECSCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred HhCCCeEEEEEEC-CCHHHHHHHHHHcCCCee----eCCHHHHhcCCCCCEEEEeCCCchhHHHHHHHHhcCCEEEEeCC
Confidence 4467888876665 567788888998886422 3688888875 57666655444434457889999999998654
No 73
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=70.36 E-value=20 Score=27.64 Aligned_cols=105 Identities=8% Similarity=-0.010 Sum_probs=63.9
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecC-CC-CCCchHHHHHHH-----cCCeEEe
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TT-DVVCTATAEALA-----MGKIVVC 330 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS-~~-E~~~~~~lEAma-----~G~PVV~ 330 (518)
.++.++.+.+. .+.+....++.|..+.......+..+.+. ..|+.+.-. .. +.-|..+++.+. ..+|||.
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~ 85 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVI 85 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEE
Confidence 35667765433 35566666666766554433333333333 356665433 23 445677777774 4688887
Q ss_pred eCCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhCC
Q 010098 331 ANHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEE 365 (518)
Q Consensus 331 t~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~ 365 (518)
..... .+.+..|..+++.. +.+++.+.+..++..+
T Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 126 (127)
T 2gkg_A 86 IGNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGFP 126 (127)
T ss_dssp EECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred EecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcCC
Confidence 72222 44566777888864 9999999999988654
No 74
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=70.06 E-value=30 Score=26.98 Aligned_cols=106 Identities=8% Similarity=0.020 Sum_probs=64.4
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEec-CCCCCCchHHHHHHHc-----CCeEEe
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNP-STTDVVCTATAEALAM-----GKIVVC 330 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~p-S~~E~~~~~~lEAma~-----G~PVV~ 330 (518)
..+++++.+.+. ...++....+.+..+.......+..+.+. ..|+++.- ...+.-|..+++.+.. ..|||.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 85 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILV 85 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEE
Confidence 356777776443 35666666766766554443333334443 34655543 3445567788887763 356666
Q ss_pred eCCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhCC
Q 010098 331 ANHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEE 365 (518)
Q Consensus 331 t~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~ 365 (518)
+.... .+.+..|..+++.. +++++.++|.+.....
T Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 86 VSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp ECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred EeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 54432 45566788888864 9999999999887643
No 75
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=69.60 E-value=37 Score=26.95 Aligned_cols=104 Identities=13% Similarity=0.000 Sum_probs=64.1
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh---hcCeeEecCC-CC-CCchHHHHHHH--cCCeEEee
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH---DYKVFLNPST-TD-VVCTATAEALA--MGKIVVCA 331 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~---~adv~v~pS~-~E-~~~~~~lEAma--~G~PVV~t 331 (518)
..+++|+.+.+. .+.++...+..|..+.......+..+.+. ..|+.+.-.. .+ .-|..+++.+. ..+|||..
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~l 84 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFL 84 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEE
Confidence 356777776443 46667777777776655444334444443 3476665433 33 45667776655 36787654
Q ss_pred -CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 332 -NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 332 -~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
.... .+.+..|..+++.. +++++.++|..++.
T Consensus 85 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 85 TAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp ESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 3332 45566677788864 89999999988765
No 76
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=68.78 E-value=14 Score=34.84 Aligned_cols=72 Identities=10% Similarity=0.055 Sum_probs=52.2
Q ss_pred HhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 256 KELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 256 ~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
.+.++++++-+-+ .+.+..++.+++++... +.+.++++...|+.+..+....-.-.+.+|+..|++|++-..
T Consensus 27 ~~~~~~~l~av~d-~~~~~~~~~a~~~~~~~-----~~~~~~ll~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP 98 (308)
T 3uuw_A 27 TKSERFEFVGAFT-PNKVKREKICSDYRIMP-----FDSIESLAKKCDCIFLHSSTETHYEIIKILLNLGVHVYVDKP 98 (308)
T ss_dssp TSCSSSEEEEEEC-SCHHHHHHHHHHHTCCB-----CSCHHHHHTTCSEEEECCCGGGHHHHHHHHHHTTCEEEECSS
T ss_pred HhCCCeEEEEEEC-CCHHHHHHHHHHcCCCC-----cCCHHHHHhcCCEEEEeCCcHhHHHHHHHHHHCCCcEEEcCC
Confidence 3456788875554 46677788888877642 578888999999877766544445567889999999997643
No 77
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=68.63 E-value=29 Score=26.91 Aligned_cols=102 Identities=10% Similarity=-0.064 Sum_probs=61.0
Q ss_pred EEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHhh--cCeeEecC-CCCCCchHHHHHHH-----cCCeEEee-
Q 010098 262 EMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPS-TTDVVCTATAEALA-----MGKIVVCA- 331 (518)
Q Consensus 262 ~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~--adv~v~pS-~~E~~~~~~lEAma-----~G~PVV~t- 331 (518)
++.++.+.+. ...+....++.|..+.......+.-+.+.. .|+.+.-. ..+.-|..+++.+. ...|||..
T Consensus 4 ~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s 83 (122)
T 3gl9_A 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLT 83 (122)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEe
Confidence 4566665333 345566666667655443332233334432 46655532 34456778888774 35776654
Q ss_pred CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 332 NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 332 ~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
..+. .+.+..|..+++.. +++++.+++.++++
T Consensus 84 ~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 84 AKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp SCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 3333 44556788888874 99999999998875
No 78
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=67.55 E-value=31 Score=29.16 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=24.4
Q ss_pred HHHhhcCeeEec---CC-CCCCchHHHH---HHHcCCeEEeeCC
Q 010098 297 PIFHDYKVFLNP---ST-TDVVCTATAE---ALAMGKIVVCANH 333 (518)
Q Consensus 297 ~l~~~adv~v~p---S~-~E~~~~~~lE---Ama~G~PVV~t~~ 333 (518)
+.+..||++|.- -. .+.-+.+..| |.|.|+|||+-..
T Consensus 63 ~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~~ 106 (161)
T 2f62_A 63 QMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFTS 106 (161)
T ss_dssp HHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEEc
Confidence 778899976643 11 2333445555 6899999999643
No 79
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=67.30 E-value=39 Score=26.33 Aligned_cols=104 Identities=7% Similarity=-0.061 Sum_probs=58.5
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEec-CCCCCCchHHHHHHHc-----CCeEEee
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNP-STTDVVCTATAEALAM-----GKIVVCA 331 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~p-S~~E~~~~~~lEAma~-----G~PVV~t 331 (518)
.+++|+.+.+. .+.++...+ .+..+.......+..+.+. ..|+.+.- ...+.-|..+++.+.. .+|||..
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~ 83 (133)
T 3nhm_A 5 PKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFV 83 (133)
T ss_dssp CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEE
Confidence 45666665332 234444443 4444443333333333333 34655543 3345567777777664 6777665
Q ss_pred C-CCC---ccccccCCcEEeeC--CHHHHHHHHHHHHhCC
Q 010098 332 N-HPS---NDFFKQFPNCRTYD--GRNGFVEATLKALAEE 365 (518)
Q Consensus 332 ~-~g~---~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~ 365 (518)
. ... .+.+..|..+++.. +++++.++|.+++...
T Consensus 84 s~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 84 SGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp ESCCC-----TTSCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred eCCCcHhHHHHhhcCCceEEeccCCHHHHHHHHHHHHhhh
Confidence 3 322 44556677778864 9999999999998654
No 80
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=66.10 E-value=59 Score=33.13 Aligned_cols=204 Identities=12% Similarity=0.063 Sum_probs=100.1
Q ss_pred CCCcEEEEcC------CchhhhhhchHHHHhhcC-CEEEEEeCChhhhhhh---hcchHHHHHHHHHHHHHHhhhhccEE
Q 010098 116 EEADIAVLEE------PEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKR---EKNDRLQAFLLEFVNSWLARVHCHKV 185 (518)
Q Consensus 116 ~~~Dvi~~~~------~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ad~v 185 (518)
.++|+++++- .+++.++.....+....+ --+..+|..+..|... .+.+..+..... +. -..+++|.+
T Consensus 134 ~~~dv~i~eiggtvgdies~pf~ea~rq~~~~~g~~n~~~ih~tlvp~~~~~ge~ktkptqhsv~~-Lr--s~GIqPdil 210 (535)
T 3nva_A 134 NNAEITLVEIGGTVGDIESLPFLEAVRQLKLEEGEDNVIFVHIALVEYLSVTGELKTKPLQHSVQE-LR--RIGIQPDFI 210 (535)
T ss_dssp HTCSEEEEEECSCTTSGGGHHHHHHHHHHHHHHCTTTEEEEEEEECCBCTTTSSBCCHHHHHHHHH-HH--HHTCCCSEE
T ss_pred CCCCEEEEEeCCccchhcccHHHHHHHHHHHHhCCCCEEEEEeeccceecCCCcccCCchHHHHHH-HH--hCCCCCCEE
Confidence 5799999873 345555544344555544 3456677554444432 222222222111 11 122268999
Q ss_pred EEeChhhhc------------cCCCceecccccCCCCcCcch------hhHHHhhcCCCCcccEEEEEEeecccCCHHHH
Q 010098 186 IRLSAATQE------------YPNSIVCNVHGVNPKFLEIGE------KKMEQQQNGNKAFTKGAYYIGRMVWSKGYEEL 247 (518)
Q Consensus 186 i~~S~~~~~------------~~~~~~~~~~GVd~~~~~~~~------~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~l 247 (518)
+|-|+..-. +..+.+....++|.-+.-|.. .......++++. +..++...
T Consensus 211 vcRs~~~l~~~~r~KiaLfc~V~~~~VI~i~DvdtiY~vpl~L~~qGl~~~~~~~l~l~~------------~~~~~~~w 278 (535)
T 3nva_A 211 VGRATLPLDDETRRKIALFTNVKVDHIVSSYDVETSYEVPIILESQKLVSKILSRLKLED------------RQVDLTDW 278 (535)
T ss_dssp EEEESSCCCHHHHHHHHHHTTCCGGGEEEEECCSCGGGHHHHHHHHTHHHHHHHHTTCCC------------CCCCCHHH
T ss_pred EEecCCCCCHHHHHhhhhhcCCChhceEecCCCChHHHhHHHHHHCCcHHHHHHHcCCCC------------CCCCHHHH
Confidence 999833321 233444444556554322211 111122233321 12233333
Q ss_pred HHHHHHHH--HhcCCcEEEEEeCCCC-h-------HHHHHHHHHcCCeEEE--eCC--C--CCh--HHHHhhcCeeEecC
Q 010098 248 LGLLNIYH--KELAGLEMDLYGNGED-F-------DQIQRAAKKLKLVVRV--YPG--R--DHA--DPIFHDYKVFLNPS 309 (518)
Q Consensus 248 l~a~~~l~--~~~~~~~l~ivG~g~~-~-------~~l~~~~~~~~l~v~~--~~~--~--~~~--~~l~~~adv~v~pS 309 (518)
-+.+.++. .....+++-++|.-.+ . +.++.....++..+.+ ... . ++. .+.+..+|.+|+|.
T Consensus 279 ~~~~~~~~~~~~~~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~~~DgIIlpG 358 (535)
T 3nva_A 279 ISFVNNIKGINSKKTINIALVGKYTKLKDSYISIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLP 358 (535)
T ss_dssp HHHHHHHHTTTCCCEEEEEEEESCTTSGGGGHHHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTTSCSEEEECC
T ss_pred HHHHHHhhccCCCCeeEEEEEecCcCCchhHHHHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhccCCCEEEECC
Confidence 33333333 2223589999998433 1 4555555556655543 221 1 111 35688999888885
Q ss_pred C-CC----CCchHHHHHHHcCCeEEeeCCC
Q 010098 310 T-TD----VVCTATAEALAMGKIVVCANHP 334 (518)
Q Consensus 310 ~-~E----~~~~~~lEAma~G~PVV~t~~g 334 (518)
- .+ +.-..+-+|...|+|++..-.|
T Consensus 359 G~G~~~~~g~i~~ir~a~~~~~PiLGIClG 388 (535)
T 3nva_A 359 GFGSRGAEGKIKAIKYAREHNIPFLGICFG 388 (535)
T ss_dssp CCSSTTHHHHHHHHHHHHHHTCCEEEETHH
T ss_pred CCCCccHHHHHHHHHHHHHcCCcEEEECcc
Confidence 2 11 1122345566789999987554
No 81
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=65.36 E-value=36 Score=26.70 Aligned_cols=103 Identities=11% Similarity=0.003 Sum_probs=63.3
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCC--eEEEeCCCCChHHHHhh---------cCeeEecC-CCCCCchHHHHHHH----
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKL--VVRVYPGRDHADPIFHD---------YKVFLNPS-TTDVVCTATAEALA---- 323 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l--~v~~~~~~~~~~~l~~~---------adv~v~pS-~~E~~~~~~lEAma---- 323 (518)
.+++++.+.+. .+.+....+..+. .+.......+..+.+.. .|+++.-. ..+.-|..+++.+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~ 82 (140)
T 1k68_A 3 KKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDPT 82 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHSTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCcc
Confidence 46677766443 4566777777776 44444444444455543 57666543 34445777777765
Q ss_pred -cCCeEEee-CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 324 -MGKIVVCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 324 -~G~PVV~t-~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
..+|||.. .... .+.+..|..+++.. +.+++..+|..++.
T Consensus 83 ~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 83 LKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp GGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred cccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHH
Confidence 35676654 3332 45556778888864 89999999888765
No 82
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=65.22 E-value=26 Score=33.55 Aligned_cols=73 Identities=19% Similarity=0.260 Sum_probs=51.3
Q ss_pred hcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhh--cCeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 257 ELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 257 ~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~--adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
..++++++-+-+ .+.+..++.++++++.... +.+.++++.. .|+.+..+....-.-.+.+|+..|++|++-..
T Consensus 24 ~~~~~~l~av~d-~~~~~~~~~~~~~g~~~~~---~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~Gk~vl~EKP 98 (344)
T 3mz0_A 24 KLSGAEIVAVTD-VNQEAAQKVVEQYQLNATV---YPNDDSLLADENVDAVLVTSWGPAHESSVLKAIKAQKYVFCEKP 98 (344)
T ss_dssp TCSSEEEEEEEC-SSHHHHHHHHHHTTCCCEE---ESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred hCCCcEEEEEEc-CCHHHHHHHHHHhCCCCee---eCCHHHHhcCCCCCEEEECCCchhHHHHHHHHHHCCCcEEEcCC
Confidence 456788775554 4667778888888853333 3677888886 78777766544445567789999999998543
No 83
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=64.58 E-value=35 Score=27.48 Aligned_cols=106 Identities=8% Similarity=-0.028 Sum_probs=58.6
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCe--EEEeCCCCChHHHHh--hcCeeEec-CCCCCCchHHHHHHHc---CCeEEee
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLV--VRVYPGRDHADPIFH--DYKVFLNP-STTDVVCTATAEALAM---GKIVVCA 331 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~--v~~~~~~~~~~~l~~--~adv~v~p-S~~E~~~~~~lEAma~---G~PVV~t 331 (518)
.+++|+.+.+. .+.+....+..+.. +.......+..+.+. ..|+++.- ...+.-|..+++.+.. .+|||..
T Consensus 21 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~l 100 (150)
T 4e7p_A 21 MKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVV 100 (150)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEE
Confidence 45666655332 24444444444421 222222222223333 24555543 3345557777776654 5676554
Q ss_pred -CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhCCC
Q 010098 332 -NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEP 366 (518)
Q Consensus 332 -~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~ 366 (518)
.... .+.+..|..+++.. +.+++.++|..++....
T Consensus 101 s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 142 (150)
T 4e7p_A 101 TTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRK 142 (150)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCC
T ss_pred eCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCE
Confidence 3333 45667788888874 99999999999987543
No 84
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=64.30 E-value=46 Score=26.04 Aligned_cols=107 Identities=7% Similarity=-0.051 Sum_probs=66.4
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHhh---cCeeEec-CCCCCCchHHHHHHHc----CCeEEe
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHD---YKVFLNP-STTDVVCTATAEALAM----GKIVVC 330 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~---adv~v~p-S~~E~~~~~~lEAma~----G~PVV~ 330 (518)
..+++|+.+.+. .+.++...++.|..+.......+....+.. .|+.+.- ...+.-|..+++.+.. .+|||.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~ 86 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALSIIV 86 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEE
Confidence 467777776443 456677777777766554433333333332 4655544 3345567788887754 467766
Q ss_pred e-CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhCCC
Q 010098 331 A-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEP 366 (518)
Q Consensus 331 t-~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~ 366 (518)
. .... .+.+..|..+++.. +.+++.++|.++.....
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (136)
T 3hdv_A 87 VSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGE 129 (136)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred EeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCch
Confidence 5 3333 45566788888874 99999999999887543
No 85
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=63.89 E-value=37 Score=30.20 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=26.6
Q ss_pred hHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcCCEEEEEeCCh
Q 010098 108 DITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNY 153 (518)
Q Consensus 108 ~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~ 153 (518)
.+.+.+++.+||++++-..... + ...+...+..-+..+|...
T Consensus 74 ~~~~~l~~~~~Dliv~agy~~i--l--~~~~l~~~~~~~iNiHpSL 115 (215)
T 3tqr_A 74 TLQKTIDHYDPKLIVLAGFMRK--L--GKAFVSHYSGRMINIHPSL 115 (215)
T ss_dssp HHHHHHHTTCCSEEEESSCCSC--C--CHHHHHHTTTSEEEEESSS
T ss_pred HHHHHHHhcCCCEEEEccchhh--C--CHHHHhhccCCeEEeCccc
Confidence 4677888999999998765322 2 2334455454466777553
No 86
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=63.79 E-value=48 Score=25.53 Aligned_cols=105 Identities=10% Similarity=0.034 Sum_probs=62.1
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHhh--cCeeEec-CCCCCCchHHHHHHH---cCCeEEee-
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNP-STTDVVCTATAEALA---MGKIVVCA- 331 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~--adv~v~p-S~~E~~~~~~lEAma---~G~PVV~t- 331 (518)
+.++.++.+.+. .+.+.......+..+.......+..+.+.. .|+.+.- ...+.-|..+++.+. ...|||..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 82 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVIT 82 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 356777776443 355666666667655443322222233333 3555543 223344666776664 35777654
Q ss_pred CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhC
Q 010098 332 NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 364 (518)
Q Consensus 332 ~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~ 364 (518)
.... .+.+..|..+++.. +.+++.+++..++..
T Consensus 83 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 83 GHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp CTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 3333 45566788888874 899999999998754
No 87
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=63.65 E-value=50 Score=26.06 Aligned_cols=105 Identities=8% Similarity=-0.041 Sum_probs=62.5
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHHc-----CCeEEee
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM-----GKIVVCA 331 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~-----G~PVV~t 331 (518)
.+++++.+.+. .+.+....+..|..+.......+.-+.+. ..|+.+.-. ..+.-|..+++.+.. .+|||..
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~ 84 (136)
T 3t6k_A 5 HTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILML 84 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEE
Confidence 46666665433 35566666666765544332222223333 346655532 344457777777643 5777654
Q ss_pred -CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhCC
Q 010098 332 -NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEE 365 (518)
Q Consensus 332 -~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~ 365 (518)
..+. .+.+..|..+++.. +++++..+|.+++...
T Consensus 85 t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 85 TAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp ECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC-
T ss_pred ecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhcc
Confidence 3333 34566788888874 9999999999988654
No 88
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=63.10 E-value=51 Score=25.62 Aligned_cols=107 Identities=12% Similarity=0.012 Sum_probs=66.7
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEE-EeCCCCChHHHHh--hcCeeEec-CCCCCCchHHHHHHHc---CCeEEee-
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVR-VYPGRDHADPIFH--DYKVFLNP-STTDVVCTATAEALAM---GKIVVCA- 331 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~-~~~~~~~~~~l~~--~adv~v~p-S~~E~~~~~~lEAma~---G~PVV~t- 331 (518)
.+++++.+.+. .+.++...++.|..+. ......+..+.+. ..|+.+.- ...+.-|..+++.+.. ..|||..
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s 81 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVS 81 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEe
Confidence 45667766443 4666777777775554 3444555555554 35665554 3345567777776653 5666654
Q ss_pred CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhCCCC
Q 010098 332 NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA 367 (518)
Q Consensus 332 ~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~~ 367 (518)
.... .+.+..|..+++.. +.+++.++|..+++....
T Consensus 82 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 123 (134)
T 3f6c_A 82 AKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 123 (134)
T ss_dssp CC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCB
T ss_pred CCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCEE
Confidence 3332 45556788888864 899999999999876553
No 89
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=62.82 E-value=28 Score=27.48 Aligned_cols=105 Identities=7% Similarity=-0.028 Sum_probs=64.4
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHHc---CCeEEeeC
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM---GKIVVCAN 332 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~---G~PVV~t~ 332 (518)
..+++++.+.+. .+.++...++.+..+.......+..+.+. ..|+++.-. ..+.-|..+++.+.. ..|||...
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s 86 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVIS 86 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEe
Confidence 366777776443 35566666665554544443333334443 356666543 345567777776654 57777653
Q ss_pred C-CC----ccccccCCcEEeeC--CHHHHHHHHHHHHhC
Q 010098 333 H-PS----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 364 (518)
Q Consensus 333 ~-g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~ 364 (518)
. .. .+.+..|..+++.. +.+++.++|.++++.
T Consensus 87 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 87 AFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp CCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHH
T ss_pred cCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHH
Confidence 3 32 45567788888864 999999999998753
No 90
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=62.70 E-value=40 Score=26.54 Aligned_cols=102 Identities=11% Similarity=0.130 Sum_probs=58.0
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecCCCCCCchHHHHHHH--c-CCeEEee-C
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALA--M-GKIVVCA-N 332 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma--~-G~PVV~t-~ 332 (518)
..+++|+.+.+. .+.+....+..|..+.......+..+.+. ..|+.++| +.-|..+++.+. . .+|||.. .
T Consensus 18 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~~---~~~g~~~~~~l~~~~~~~~ii~ls~ 94 (137)
T 2pln_A 18 SMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVS---DKNALSFVSRIKEKHSSIVVLVSSD 94 (137)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEEEC---STTHHHHHHHHHHHSTTSEEEEEES
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEEEc---CccHHHHHHHHHhcCCCccEEEEeC
Confidence 356666665332 34555555555655443333333333333 34666633 233566666654 3 7787655 3
Q ss_pred CCC----ccccccCCcEEee--C-CHHHHHHHHHHHHhC
Q 010098 333 HPS----NDFFKQFPNCRTY--D-GRNGFVEATLKALAE 364 (518)
Q Consensus 333 ~g~----~e~i~~~~~g~~~--~-d~~~l~~~i~~ll~~ 364 (518)
... .+.+..|..+++. - +.+++..+|..++..
T Consensus 95 ~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 95 NPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp SCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 332 4556677888885 3 889999999988754
No 91
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=62.43 E-value=14 Score=31.37 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=41.7
Q ss_pred HHHhhcCeeEecC-CCCCCchHHHH---HHHcCCeEEeeCCC----C-c---------ccccc-------------CCcE
Q 010098 297 PIFHDYKVFLNPS-TTDVVCTATAE---ALAMGKIVVCANHP----S-N---------DFFKQ-------------FPNC 345 (518)
Q Consensus 297 ~l~~~adv~v~pS-~~E~~~~~~lE---Ama~G~PVV~t~~g----~-~---------e~i~~-------------~~~g 345 (518)
+.+..||++|.-- -.+.-+-+.+| |.|.|+||++-... | . |..++ ..+|
T Consensus 65 ~~i~~aD~viA~ldg~~~D~Gt~~EiG~A~a~gkPVi~~~~D~R~~g~~~~~~~~~~~~~~e~~f~~~N~~~~G~i~~~g 144 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQKLDALNEIAENQFHYLNLYTVGLIKLNG 144 (162)
T ss_dssp HHHHTCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEEEECCCGGGCCTTCHHHHHHTTSTTCCCSCCCCHHHHHHHHTTE
T ss_pred HHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEcCcccccCCcchhhhhhHHHhhhhhhhhhHHHhhhHHhCC
Confidence 5677999766532 12222334444 78999999988442 1 1 11111 1278
Q ss_pred EeeCCHHHHHHHHHHHH
Q 010098 346 RTYDGRNGFVEATLKAL 362 (518)
Q Consensus 346 ~~~~d~~~l~~~i~~ll 362 (518)
.++.+.+++.++|.+.+
T Consensus 145 ~~~~~~~~~~~~l~~~~ 161 (162)
T 3ehd_A 145 RVVSSEEDLLEEIKQRL 161 (162)
T ss_dssp EEESSHHHHHHHHHHTC
T ss_pred eEEeCHHHHHHHHHHHh
Confidence 88899999999998764
No 92
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=61.95 E-value=32 Score=28.10 Aligned_cols=103 Identities=5% Similarity=0.014 Sum_probs=54.7
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEE-EeCCCCChHHHHh----hcCeeEecC-CCCCCchHHHHHHH---cCCeEEe
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVR-VYPGRDHADPIFH----DYKVFLNPS-TTDVVCTATAEALA---MGKIVVC 330 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~-~~~~~~~~~~l~~----~adv~v~pS-~~E~~~~~~lEAma---~G~PVV~ 330 (518)
.+++|+.+.+. .+.++...++.|..+. ......+..+.+. ..|+++.-. ..+.-|..+++.+. ..+|||.
T Consensus 37 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ 116 (157)
T 3hzh_A 37 FNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIM 116 (157)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEE
Confidence 34555544222 2344444444454433 2222222222222 346555433 33445666666554 3567665
Q ss_pred e-CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 331 A-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 331 t-~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
. .... .+.+..|..+++.. +.+++.++|.+++.
T Consensus 117 ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 117 ISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred EeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 4 3332 45567788888864 89999999998764
No 93
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=61.88 E-value=60 Score=26.89 Aligned_cols=90 Identities=19% Similarity=0.131 Sum_probs=54.6
Q ss_pred HHHHHHHHHcCCeEEEeCCCCChH--HH----HhhcC-eeEecCCCCCCchHHHHHH----HcCCeEEeeCCC---Ccc-
Q 010098 273 DQIQRAAKKLKLVVRVYPGRDHAD--PI----FHDYK-VFLNPSTTDVVCTATAEAL----AMGKIVVCANHP---SND- 337 (518)
Q Consensus 273 ~~l~~~~~~~~l~v~~~~~~~~~~--~l----~~~ad-v~v~pS~~E~~~~~~lEAm----a~G~PVV~t~~g---~~e- 337 (518)
+.+++.+.++|+.+.++-.-.+-+ +. ...+| +.++|.-+-..+..+.+|+ +.++|+|=--.. .+|
T Consensus 36 ~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~l~~~~~P~VEVHiSNi~aRE~ 115 (151)
T 3u80_A 36 KLCAEWGKDLGLEVEVRQTDDEAEMVRWMHQAADEKTPVVMNPAAFTHYSYALADAAHMVIDENLPLMEVHISNPSARDE 115 (151)
T ss_dssp HHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHHHHTCCEEEECTTCCSCCHHHHHHHHHHHHTTCCEEEEESSCCC----
T ss_pred HHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhHHHHHHHHHHhhcCCCEEEEEcCCcccccc
Confidence 445556666676666544322222 22 23345 8899988878899999994 459999876433 255
Q ss_pred -----ccccCCcEEeeC-CHHHHHHHHHHHH
Q 010098 338 -----FFKQFPNCRTYD-GRNGFVEATLKAL 362 (518)
Q Consensus 338 -----~i~~~~~g~~~~-d~~~l~~~i~~ll 362 (518)
++.+-..|.+.. -.+...-++..++
T Consensus 116 FRh~S~~s~~a~G~I~G~G~~gY~lAl~~~~ 146 (151)
T 3u80_A 116 FRKRSVISPVATGTITGMGFYGYKLALDAVA 146 (151)
T ss_dssp -----CSCCCCSEEEESSTTHHHHHHHHHHH
T ss_pred hhhcccccccceEEEEecChHHHHHHHHHHH
Confidence 555566777765 5555555555543
No 94
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=61.81 E-value=30 Score=32.82 Aligned_cols=70 Identities=14% Similarity=0.056 Sum_probs=50.6
Q ss_pred hcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 257 ELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 257 ~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
+.++++++-+-+ .+.+..++.+++++.. +.+.++++. ..|+.+..+....-.-.+.+|+..|++|++-..
T Consensus 24 ~~~~~~l~av~d-~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP 95 (331)
T 4hkt_A 24 GNADARLVAVAD-AFPAAAEAIAGAYGCE------VRTIDAIEAAADIDAVVICTPTDTHADLIERFARAGKAIFCEKP 95 (331)
T ss_dssp HCTTEEEEEEEC-SSHHHHHHHHHHTTCE------ECCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred hCCCcEEEEEEC-CCHHHHHHHHHHhCCC------cCCHHHHhcCCCCCEEEEeCCchhHHHHHHHHHHcCCcEEEecC
Confidence 346788775554 4667778888888764 478889998 788777766544445567889999999998653
No 95
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=61.67 E-value=31 Score=27.24 Aligned_cols=106 Identities=11% Similarity=-0.029 Sum_probs=61.6
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHhh--cCeeEecC-CC-----CCCchHHHHHHH---cCCeE
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPS-TT-----DVVCTATAEALA---MGKIV 328 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~--adv~v~pS-~~-----E~~~~~~lEAma---~G~PV 328 (518)
.+++++.+.+. .+.+....+..|..+.......+..+.+.. .|+++.-. .. +.-|..+++.+. ..+||
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~i 83 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPV 83 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCE
Confidence 56677765433 355566666666655544433333344443 35555432 22 445666666654 36776
Q ss_pred Eee-CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhCCC
Q 010098 329 VCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEP 366 (518)
Q Consensus 329 V~t-~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~ 366 (518)
|.. .... .+.+..|..+++.. +.+++.++|..++....
T Consensus 84 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 128 (140)
T 2qr3_A 84 VLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAK 128 (140)
T ss_dssp EEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC-
T ss_pred EEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhcc
Confidence 654 3332 45556778888863 89999999999886543
No 96
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=61.50 E-value=8.1 Score=31.94 Aligned_cols=40 Identities=23% Similarity=0.245 Sum_probs=32.6
Q ss_pred ccEEEEEeeccCCcccccccchHHHHHHHHhcCCeeE-EEEec
Q 010098 5 QQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRV-TLVIP 46 (518)
Q Consensus 5 ~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V-~vi~~ 46 (518)
.||++|+.+.. |+.+-.+...+..+..+.+.| |+| .|+-.
T Consensus 12 ~~~~~ivv~~~-Pyg~~~a~~Al~~A~aala~g-~eV~~VFf~ 52 (140)
T 2d1p_A 12 SMRFAIVVTGP-AYGTQQASSAFQFAQALIADG-HELSSVFFY 52 (140)
T ss_dssp CCEEEEEECSC-SSSSSHHHHHHHHHHHHHHTT-CEEEEEEEC
T ss_pred ceEEEEEEcCC-CCCcHHHHHHHHHHHHHHHCC-CccCEEEEe
Confidence 38999998876 776666777788998888888 999 88855
No 97
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=61.44 E-value=48 Score=26.76 Aligned_cols=104 Identities=11% Similarity=0.063 Sum_probs=61.4
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHhh--cCeeEec-CCCCCCchHHHHHHH---cCCeEEeeC
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNP-STTDVVCTATAEALA---MGKIVVCAN 332 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~--adv~v~p-S~~E~~~~~~lEAma---~G~PVV~t~ 332 (518)
..+++++.+.+. ...+....+..|..+.......+..+.+.. .|+++.- ...+.-|..+++.+. ..+|||...
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls 86 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVIS 86 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEe
Confidence 467777776443 355666666667665544433333344443 4666553 333445666666654 367876553
Q ss_pred C-CC----ccccccC-CcEEeeC--CHHHHHHHHHHHHh
Q 010098 333 H-PS----NDFFKQF-PNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 333 ~-g~----~e~i~~~-~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
. .. .+.+..+ ..+++.. +.+++..+|..++.
T Consensus 87 ~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~ 125 (154)
T 2rjn_A 87 GYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQ 125 (154)
T ss_dssp CGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHH
Confidence 3 32 3444455 6778763 88999999888764
No 98
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=60.61 E-value=42 Score=26.65 Aligned_cols=104 Identities=9% Similarity=0.039 Sum_probs=64.2
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCCe--EEEeCCCCChHHHHhh--cCeeEec-CCCCCCchHHHHHHHc-----CCeE
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKLV--VRVYPGRDHADPIFHD--YKVFLNP-STTDVVCTATAEALAM-----GKIV 328 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l~--v~~~~~~~~~~~l~~~--adv~v~p-S~~E~~~~~~lEAma~-----G~PV 328 (518)
..+++|+.+.+. ...++...+..+.. +.......+..+.+.. .|+++.- ...+.-|..+++.+.. ++||
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pi 84 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPI 84 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCE
Confidence 467777776443 45667777777765 3333333333344443 4665554 3344567788888765 5777
Q ss_pred EeeC-CCC----ccccccCCcEEee--C-CHHHHHHHHHHHHh
Q 010098 329 VCAN-HPS----NDFFKQFPNCRTY--D-GRNGFVEATLKALA 363 (518)
Q Consensus 329 V~t~-~g~----~e~i~~~~~g~~~--~-d~~~l~~~i~~ll~ 363 (518)
|... ... .+.+..|..+++. - +.+++.++|..+++
T Consensus 85 i~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 85 VILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp EEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 7653 333 4556778888885 3 78899988888765
No 99
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=60.23 E-value=59 Score=25.63 Aligned_cols=107 Identities=7% Similarity=-0.105 Sum_probs=64.8
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCC--eEEEeCCCCChHHHHhh-------cCeeEecC-CCCCCchHHHHHHHc----
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKL--VVRVYPGRDHADPIFHD-------YKVFLNPS-TTDVVCTATAEALAM---- 324 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l--~v~~~~~~~~~~~l~~~-------adv~v~pS-~~E~~~~~~lEAma~---- 324 (518)
..+++|+.+.+. ...+....+..+. .+.......+..+.+.. .|+++.-. ..+.-|..+++.+..
T Consensus 9 ~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~ 88 (146)
T 3ilh_A 9 IDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQP 88 (146)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGG
T ss_pred cceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhh
Confidence 356777776443 3556666676665 33334433344455544 57666543 345567777777654
Q ss_pred ---CCeEEeeCC-CC----ccccccC-CcEEeeC--CHHHHHHHHHHHHhCCC
Q 010098 325 ---GKIVVCANH-PS----NDFFKQF-PNCRTYD--GRNGFVEATLKALAEEP 366 (518)
Q Consensus 325 ---G~PVV~t~~-g~----~e~i~~~-~~g~~~~--d~~~l~~~i~~ll~~~~ 366 (518)
..|||.... .. .+.+..+ ..+++.. +.+++.++|.+......
T Consensus 89 ~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~~ 141 (146)
T 3ilh_A 89 MKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEGH 141 (146)
T ss_dssp GTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC--
T ss_pred ccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhcc
Confidence 567665533 32 3445556 7778864 99999999999887543
No 100
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=60.22 E-value=50 Score=25.19 Aligned_cols=103 Identities=10% Similarity=-0.042 Sum_probs=58.6
Q ss_pred EEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHHc-----CCeEEeeC
Q 010098 262 EMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM-----GKIVVCAN 332 (518)
Q Consensus 262 ~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~-----G~PVV~t~ 332 (518)
++.++.+.+. .+.++...+..|..+.......+..+.+. ..|+.+.-. ..+.-|..+++.+.. .+|||...
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s 82 (124)
T 1mb3_A 3 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVT 82 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEE
Confidence 4556665333 35556666666665443322222223333 356655432 334457777777753 57776653
Q ss_pred -CCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhC
Q 010098 333 -HPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 364 (518)
Q Consensus 333 -~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~ 364 (518)
... .+.+..|..+++.. +.+++.+++..++..
T Consensus 83 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 83 AFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp ------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 222 34456778888864 899999999988764
No 101
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=59.43 E-value=57 Score=26.25 Aligned_cols=103 Identities=10% Similarity=0.063 Sum_probs=58.1
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHH---cCCeEEeeCC
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA---MGKIVVCANH 333 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma---~G~PVV~t~~ 333 (518)
.+++|+.+.+. ...++...++.|..+.......+..+.+. ..|+++.-. ..+.-|..+++.+. ..+|||....
T Consensus 15 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 94 (153)
T 3hv2_A 15 PEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTG 94 (153)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECC
T ss_pred ceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEEC
Confidence 45666655332 34455555555554443333333333333 246555433 34455666766654 4677766533
Q ss_pred -CC----ccccccC-CcEEeeC--CHHHHHHHHHHHHh
Q 010098 334 -PS----NDFFKQF-PNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 334 -g~----~e~i~~~-~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
.. .+.+..| ..+++.. +.+++..+|..++.
T Consensus 95 ~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~ 132 (153)
T 3hv2_A 95 DPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALE 132 (153)
T ss_dssp CCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 32 3455666 6788864 89999999988775
No 102
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=59.04 E-value=34 Score=27.75 Aligned_cols=103 Identities=9% Similarity=0.008 Sum_probs=60.7
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEec-CCCCCCchHHHHHHH---cCCeEEee-C
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNP-STTDVVCTATAEALA---MGKIVVCA-N 332 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~p-S~~E~~~~~~lEAma---~G~PVV~t-~ 332 (518)
.+++++.+.+. ...+.......|..+.......+..+.+. ..|+.+.- ...+.-|..+++.+. ..+|||.. .
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~ 83 (155)
T 1qkk_A 4 PSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTG 83 (155)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEEC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEEC
Confidence 46677766443 45666666777766554332222222222 34665543 334445666666654 36787765 3
Q ss_pred CCC----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 333 HPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 333 ~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
... .+.+..|..+++.. +.+++...|..++.
T Consensus 84 ~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 120 (155)
T 1qkk_A 84 HGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEE 120 (155)
T ss_dssp GGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Confidence 332 45566778888864 89999999998764
No 103
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=58.95 E-value=21 Score=34.73 Aligned_cols=73 Identities=12% Similarity=0.129 Sum_probs=49.5
Q ss_pred HhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhh--cCeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 256 KELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 256 ~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~--adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
...++++++-+-+ .+.+..++.+++++.... +.+.+++++. .|+.+..+....-.-.+.+|+.+|++|+|=.-
T Consensus 52 ~~~~~~~lvav~d-~~~~~a~~~a~~~g~~~~----y~d~~ell~~~~iDaV~IatP~~~H~~~a~~al~aGkhVl~EKP 126 (393)
T 4fb5_A 52 GDVERPRLVHLAE-ANAGLAEARAGEFGFEKA----TADWRALIADPEVDVVSVTTPNQFHAEMAIAALEAGKHVWCEKP 126 (393)
T ss_dssp CSSCCCEEEEEEC-C--TTHHHHHHHHTCSEE----ESCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred ccCCCcEEEEEEC-CCHHHHHHHHHHhCCCee----cCCHHHHhcCCCCcEEEECCChHHHHHHHHHHHhcCCeEEEccC
Confidence 3456788877765 455667788888886422 3678888875 56666655444444557889999999998654
No 104
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=58.66 E-value=46 Score=26.60 Aligned_cols=105 Identities=11% Similarity=0.006 Sum_probs=61.1
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHH-------cCCeE
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA-------MGKIV 328 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma-------~G~PV 328 (518)
..++.++.+.+. ...++...++.|..+.......+..+.+. ..|+.+.-. ..+.-|..+++.+. ..+||
T Consensus 14 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pi 93 (143)
T 3m6m_D 14 SMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPV 93 (143)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCE
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeE
Confidence 467778776443 35566666666665554433333334443 356666532 34455777877764 23676
Q ss_pred EeeCC-CC----ccccccCCcEEeeC--CHHHHHHHHHHHHhC
Q 010098 329 VCANH-PS----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 364 (518)
Q Consensus 329 V~t~~-g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~ 364 (518)
|.... .. .+....|..+++.. +.+++.++|.++...
T Consensus 94 i~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 94 VVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred EEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 66533 33 34556788888874 999999999987643
No 105
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=58.63 E-value=9.1 Score=31.02 Aligned_cols=39 Identities=10% Similarity=0.138 Sum_probs=30.1
Q ss_pred cEEEEEeeccCCcccccccchHHHHHHHHhcCCeeE-EEEec
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRV-TLVIP 46 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V-~vi~~ 46 (518)
||++|+.+.. |+.+-.+...+..+..+.+.| |+| .|+-.
T Consensus 1 mk~~iiv~~~-p~~~~~~~~al~~a~a~~~~g-~~v~~vff~ 40 (130)
T 2hy5_A 1 MKFALQINEG-PYQHQASDSAYQFAKAALEKG-HEIFRVFFY 40 (130)
T ss_dssp CEEEEEECSC-TTTSTHHHHHHHHHHHHHHTT-CEEEEEEEC
T ss_pred CEEEEEEeCC-CCCcHHHHHHHHHHHHHHhcC-CeeCEEEEe
Confidence 5788888765 765555667788888888888 999 88855
No 106
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=57.91 E-value=58 Score=30.84 Aligned_cols=78 Identities=19% Similarity=0.214 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecCCCCCCchHHHHHHHc
Q 010098 247 LLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAM 324 (518)
Q Consensus 247 ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~ 324 (518)
+++++. +.++++++-+-+ .+.+..++.+++++.. ..+.+.++++. ..|+.+..+....-.-.+.+|+..
T Consensus 20 ~~~~l~----~~~~~~l~av~d-~~~~~~~~~~~~~~~~----~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~ 90 (330)
T 3e9m_A 20 FVAGLR----ESAQAEVRGIAS-RRLENAQKMAKELAIP----VAYGSYEELCKDETIDIIYIPTYNQGHYSAAKLALSQ 90 (330)
T ss_dssp HHHHHH----HSSSEEEEEEBC-SSSHHHHHHHHHTTCC----CCBSSHHHHHHCTTCSEEEECCCGGGHHHHHHHHHHT
T ss_pred HHHHHH----hCCCcEEEEEEe-CCHHHHHHHHHHcCCC----ceeCCHHHHhcCCCCCEEEEcCCCHHHHHHHHHHHHC
Confidence 455553 346777775554 4556677777877752 23578888988 778777665444444457789999
Q ss_pred CCeEEeeCC
Q 010098 325 GKIVVCANH 333 (518)
Q Consensus 325 G~PVV~t~~ 333 (518)
|++|++-..
T Consensus 91 gk~vl~EKP 99 (330)
T 3e9m_A 91 GKPVLLEKP 99 (330)
T ss_dssp TCCEEECSS
T ss_pred CCeEEEeCC
Confidence 999998654
No 107
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=57.81 E-value=57 Score=24.93 Aligned_cols=102 Identities=7% Similarity=-0.030 Sum_probs=58.3
Q ss_pred EEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEec-CCCCCCchHHHHHHH--cCCeEEee-CCC
Q 010098 262 EMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNP-STTDVVCTATAEALA--MGKIVVCA-NHP 334 (518)
Q Consensus 262 ~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~p-S~~E~~~~~~lEAma--~G~PVV~t-~~g 334 (518)
++.++.+.+. .+.++...+..|..+.......+..+.+. ..|+.+.- ...+.-|..+++.+. ...|||.. ...
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~ 83 (120)
T 3f6p_A 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKD 83 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESS
T ss_pred eEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCC
Confidence 5566665332 34555666666665544332222223333 24655543 234445666766664 35676654 333
Q ss_pred C----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 335 S----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 335 ~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
. .+.+..|..+++.. +.+++..++..++.
T Consensus 84 ~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 84 SEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp CHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred ChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 2 34566788888863 99999999998875
No 108
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=57.81 E-value=23 Score=31.83 Aligned_cols=89 Identities=9% Similarity=0.022 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCC---C----hHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCC---
Q 010098 244 YEELLGLLNIYHKELAGLEMDLYGNGE---D----FDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDV--- 313 (518)
Q Consensus 244 ~~~ll~a~~~l~~~~~~~~l~ivG~g~---~----~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~--- 313 (518)
++.+.+++..+... ..++.++..+. + ...+.+..+++|.++....-.++..+.+..||..++|- .+.
T Consensus 17 l~~~~~~l~~~~~~--~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~~ad~I~lpG-G~~~~~ 93 (229)
T 1fy2_A 17 LEHALPLIANQLNG--RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEKAEIIIVGG-GNTFQL 93 (229)
T ss_dssp TTTTHHHHHHHHTT--CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHHHCSEEEECC-SCHHHH
T ss_pred HHHHHHHHHHHhcC--CCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHhcCCEEEECC-CcHHHH
Confidence 33445555554432 56788876652 2 24456666778877666544456668889999999995 332
Q ss_pred --------CchHHHHHHHcCCeEEeeCCCC
Q 010098 314 --------VCTATAEALAMGKIVVCANHPS 335 (518)
Q Consensus 314 --------~~~~~lEAma~G~PVV~t~~g~ 335 (518)
+--.+-|+...|+|++.+-.|.
T Consensus 94 ~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~ 123 (229)
T 1fy2_A 94 LKESRERGLLAPMADRVKRGALYIGWSAGA 123 (229)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCEEEEETHHH
T ss_pred HHHHHHCChHHHHHHHHHcCCEEEEECHHH
Confidence 3445778888999999998875
No 109
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=56.92 E-value=64 Score=24.76 Aligned_cols=104 Identities=9% Similarity=-0.031 Sum_probs=60.6
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCC-eEEEeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHHc-----CCeEE
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKL-VVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM-----GKIVV 329 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l-~v~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~-----G~PVV 329 (518)
..++.++.+.+. .+.++...+..+. .+.......+..+.+. ..|+++.-. ..+.-|..+++.+.. .+|||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii 83 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVL 83 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEE
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEE
Confidence 356677765433 3555666666665 2333332222223333 246665432 334457778888764 56766
Q ss_pred ee-CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 330 CA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 330 ~t-~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
.. .... .+.+..|..+++.. +.+++.+++.+++.
T Consensus 84 ~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 84 MVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 124 (128)
T ss_dssp EEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHH
Confidence 54 3333 45566788888864 89999999988764
No 110
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=56.88 E-value=58 Score=25.51 Aligned_cols=104 Identities=11% Similarity=-0.027 Sum_probs=63.4
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCCeEEE-eCCCCChHHHHh--hcCeeEecCC-C-CCCchHHHHHHH--cCCeEEee
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKLVVRV-YPGRDHADPIFH--DYKVFLNPST-T-DVVCTATAEALA--MGKIVVCA 331 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~-~~~~~~~~~l~~--~adv~v~pS~-~-E~~~~~~lEAma--~G~PVV~t 331 (518)
..+++++.+.+. .+.+....+..|..+.. .....+..+.+. ..|+.+.-.. . +.-|..+++.+. ..+|||.-
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~l 88 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNLPIIFI 88 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEE
Confidence 467777776443 45666666666766552 443333334443 3576665432 2 344666666554 47887755
Q ss_pred -CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 332 -NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 332 -~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
.... .+.+..|..+++.. +.+++..+|..++.
T Consensus 89 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 127 (140)
T 3cg0_A 89 TSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIH 127 (140)
T ss_dssp ECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 3333 35566778888863 89999999998875
No 111
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=56.79 E-value=38 Score=32.50 Aligned_cols=72 Identities=11% Similarity=0.159 Sum_probs=50.8
Q ss_pred HhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 256 KELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 256 ~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
.+.|+++++-+-+ .+.+..++.+++++.. .+.+.+++++ ..|+.+..+....-.-.+.+|+..|++|++-..
T Consensus 25 ~~~~~~~lvav~d-~~~~~~~~~~~~~g~~-----~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP 98 (354)
T 3db2_A 25 TKSEKLKLVTCYS-RTEDKREKFGKRYNCA-----GDATMEALLAREDVEMVIITVPNDKHAEVIEQCARSGKHIYVEKP 98 (354)
T ss_dssp TTCSSEEEEEEEC-SSHHHHHHHHHHHTCC-----CCSSHHHHHHCSSCCEEEECSCTTSHHHHHHHHHHTTCEEEEESS
T ss_pred HhCCCcEEEEEEC-CCHHHHHHHHHHcCCC-----CcCCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHHcCCEEEEccC
Confidence 3456788775554 4567777777877753 2678889994 578777666544445557889999999998754
No 112
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=56.60 E-value=49 Score=26.62 Aligned_cols=103 Identities=9% Similarity=0.053 Sum_probs=64.4
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCC--eEEEeCCCCChHHHHh-----------hcCeeEec-CCCCCCchHHHHHHHc-
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKL--VVRVYPGRDHADPIFH-----------DYKVFLNP-STTDVVCTATAEALAM- 324 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l--~v~~~~~~~~~~~l~~-----------~adv~v~p-S~~E~~~~~~lEAma~- 324 (518)
.+++|+.+.+. .+.++...++.+. .+.......+..+.+. ..|+++.- ...+.-|..+++.+..
T Consensus 5 ~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~~ 84 (152)
T 3heb_A 5 VTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKEN 84 (152)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHHS
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHhc
Confidence 56777776443 4666777777776 4444444334444442 34665554 3345567888887765
Q ss_pred ----CCeEEee-CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 325 ----GKIVVCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 325 ----G~PVV~t-~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
++|||.. .... .+.+..|..+++.. +++++.++|.++..
T Consensus 85 ~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 134 (152)
T 3heb_A 85 PHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGL 134 (152)
T ss_dssp TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred ccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 5676654 3333 34566788888864 89999998888754
No 113
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=56.53 E-value=64 Score=27.24 Aligned_cols=91 Identities=16% Similarity=0.173 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCeEEEeCCCCChH--HH----HhhcC-eeEecCCCCCCchHHHHHH-HcCCeEEeeCCC---Ccc----
Q 010098 273 DQIQRAAKKLKLVVRVYPGRDHAD--PI----FHDYK-VFLNPSTTDVVCTATAEAL-AMGKIVVCANHP---SND---- 337 (518)
Q Consensus 273 ~~l~~~~~~~~l~v~~~~~~~~~~--~l----~~~ad-v~v~pS~~E~~~~~~lEAm-a~G~PVV~t~~g---~~e---- 337 (518)
+.+++.+.++|+.+.++-.-.+-+ +. ...+| +.++|.-+--.+.++.+|+ +.++|+|=--.. .+|
T Consensus 60 ~~l~~~a~~~G~~l~~~QSN~EGeLId~Ih~A~~~~dgIIINPgAyTHtSvAlrDAL~~v~~P~VEVHiSNihaRE~FRh 139 (172)
T 3n8k_A 60 ALIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSVALRDACAELSAPLIEVHISNVHAREEFRR 139 (172)
T ss_dssp HHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCHHHHHHHTTCCSCEEEEESSCTTSSCGGGG
T ss_pred HHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhHHHHHHHHhCCCCEEEEEcCCchhcccccc
Confidence 344555556666665544322211 22 23455 8899987777899999998 568999876433 255
Q ss_pred --ccccCCcEEeeC-CHHHHHHHHHHHHh
Q 010098 338 --FFKQFPNCRTYD-GRNGFVEATLKALA 363 (518)
Q Consensus 338 --~i~~~~~g~~~~-d~~~l~~~i~~ll~ 363 (518)
++.+-..|.+.. -.+...-++..+++
T Consensus 140 hS~is~~a~GvI~G~G~~gY~lAl~al~~ 168 (172)
T 3n8k_A 140 HSYLSPIATGVIVGLGIQGYLLALRYLAE 168 (172)
T ss_dssp CCSSGGGSSEEEESSTTHHHHHHHHHHHH
T ss_pred cccccccceEEEEeCChHHHHHHHHHHHH
Confidence 455566788775 66666666666554
No 114
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=56.49 E-value=19 Score=31.59 Aligned_cols=62 Identities=15% Similarity=0.053 Sum_probs=38.2
Q ss_pred HHHhhcCeeEe-cCCCCCCch--HHHHHHHcCCeEEeeCCCC--cccc----ccC-------C-cEEeeCCHHHHHHHHH
Q 010098 297 PIFHDYKVFLN-PSTTDVVCT--ATAEALAMGKIVVCANHPS--NDFF----KQF-------P-NCRTYDGRNGFVEATL 359 (518)
Q Consensus 297 ~l~~~adv~v~-pS~~E~~~~--~~lEAma~G~PVV~t~~g~--~e~i----~~~-------~-~g~~~~d~~~l~~~i~ 359 (518)
-+...+|.||. |. ++|+ .+.||+..|+||++-+..+ .+.+ .++ . .-.+++|++++.+.|.
T Consensus 114 ~m~~~sda~IvlpG---G~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~~ee~~~~l~ 190 (195)
T 1rcu_A 114 VLLRNADVVVSIGG---EIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTVEEAVQIIE 190 (195)
T ss_dssp HHHTTCSEEEEESC---CHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESSHHHHHHHHH
T ss_pred HHHHhCCEEEEecC---CCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCCHHHHHHHHH
Confidence 34457786654 43 2343 3788999999999997543 3222 111 1 1223579999998887
Q ss_pred HH
Q 010098 360 KA 361 (518)
Q Consensus 360 ~l 361 (518)
+.
T Consensus 191 ~~ 192 (195)
T 1rcu_A 191 QI 192 (195)
T ss_dssp TC
T ss_pred HH
Confidence 54
No 115
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=56.30 E-value=12 Score=29.28 Aligned_cols=60 Identities=13% Similarity=0.047 Sum_probs=40.5
Q ss_pred EEEEeCCCC----hHHHHHHHHHcCCeEEEe-CCCCChHHHHhhcCeeEecCCCCCCchHHHHHHH
Q 010098 263 MDLYGNGED----FDQIQRAAKKLKLVVRVY-PGRDHADPIFHDYKVFLNPSTTDVVCTATAEALA 323 (518)
Q Consensus 263 l~ivG~g~~----~~~l~~~~~~~~l~v~~~-~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma 323 (518)
++++|.|-. -+.+++.+++.|+++.+. .+..+..+....+|+++..... .+-..-++..+
T Consensus 7 ll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~~~~~~~~Dvil~~pqv-~~~~~~~~~~~ 71 (106)
T 1e2b_A 7 YLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQI-AYMLPEIQRLL 71 (106)
T ss_dssp EEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSSTTHHHHHCSEEEECTTS-GGGHHHHHHHS
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhccCCCEEEEccch-hhhHHHHHHHh
Confidence 456666654 267888899999987764 4777888888999988866532 23334444444
No 116
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=56.22 E-value=50 Score=26.03 Aligned_cols=104 Identities=6% Similarity=-0.044 Sum_probs=60.9
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHHc--CCeEEee-C
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM--GKIVVCA-N 332 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~--G~PVV~t-~ 332 (518)
..+++++.+.+. .+.+.......+..+.......+..+.+. ..|+++.-. ..+.-|..+++.+.. ..|||.. .
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~ 83 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTY 83 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEES
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEc
Confidence 356777776443 35566666666665443333223333333 346665432 233456677777653 5676654 3
Q ss_pred CCC----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 333 HPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 333 ~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
... .+.+..|..+++.. +.+++.+++..++.
T Consensus 84 ~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 84 INEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILR 120 (136)
T ss_dssp CCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 332 45566788888864 89999998888764
No 117
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=56.16 E-value=37 Score=33.14 Aligned_cols=71 Identities=10% Similarity=0.091 Sum_probs=50.1
Q ss_pred hcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhh--cCeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 257 ELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 257 ~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~--adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
..++++++-+-+ .+.+..++.+++++.. .+.+.+++++. .|+.+..+....-.-.+.+|+..|++|++-..
T Consensus 24 ~~~~~~l~av~d-~~~~~~~~~a~~~g~~-----~~~~~~ell~~~~vD~V~i~tp~~~H~~~~~~al~aGk~Vl~EKP 96 (387)
T 3moi_A 24 HHPDAQIVAACD-PNEDVRERFGKEYGIP-----VFATLAEMMQHVQMDAVYIASPHQFHCEHVVQASEQGLHIIVEKP 96 (387)
T ss_dssp HCTTEEEEEEEC-SCHHHHHHHHHHHTCC-----EESSHHHHHHHSCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred hCCCeEEEEEEe-CCHHHHHHHHHHcCCC-----eECCHHHHHcCCCCCEEEEcCCcHHHHHHHHHHHHCCCceeeeCC
Confidence 356788776654 4566677777777754 24688889886 78777766544444567899999999998654
No 118
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=56.05 E-value=24 Score=34.21 Aligned_cols=82 Identities=15% Similarity=0.129 Sum_probs=53.9
Q ss_pred HHHHHHHHHHh---cCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhh--cCeeEecCCCCCCchHHHHH
Q 010098 247 LLGLLNIYHKE---LAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPSTTDVVCTATAEA 321 (518)
Q Consensus 247 ll~a~~~l~~~---~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~--adv~v~pS~~E~~~~~~lEA 321 (518)
.++++..+..- ..+++++-+.+ .+.+..++.+++++.... +.+.+++++. .|+.+..+....-.-.+.+|
T Consensus 21 h~~~~~~~~~~~~~~~~~~l~av~d-~~~~~a~~~a~~~g~~~~----~~d~~~ll~~~~iDaV~I~tP~~~H~~~~~~a 95 (390)
T 4h3v_A 21 HSQAWRSAPRFFDLPLHPDLNVLCG-RDAEAVRAAAGKLGWSTT----ETDWRTLLERDDVQLVDVCTPGDSHAEIAIAA 95 (390)
T ss_dssp HHHHHHHHHHHSCCSSEEEEEEEEC-SSHHHHHHHHHHHTCSEE----ESCHHHHTTCTTCSEEEECSCGGGHHHHHHHH
T ss_pred HHHHHHhCccccccccCceEEEEEc-CCHHHHHHHHHHcCCCcc----cCCHHHHhcCCCCCEEEEeCChHHHHHHHHHH
Confidence 34555544332 12346666665 567788888898886422 3678888875 56666655444445567889
Q ss_pred HHcCCeEEeeCC
Q 010098 322 LAMGKIVVCANH 333 (518)
Q Consensus 322 ma~G~PVV~t~~ 333 (518)
+.+|++|+|=.-
T Consensus 96 l~aGkhVl~EKP 107 (390)
T 4h3v_A 96 LEAGKHVLCEKP 107 (390)
T ss_dssp HHTTCEEEEESS
T ss_pred HHcCCCceeecC
Confidence 999999998754
No 119
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=55.92 E-value=38 Score=32.58 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=50.0
Q ss_pred hcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhh--cCeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 257 ELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 257 ~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~--adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
..++++++-+-+ .+.+..++.++++++.... +.+.++++.. .|+.+..+....-.-.+.+|+..|++|++-..
T Consensus 45 ~~~~~~lvav~d-~~~~~~~~~a~~~g~~~~~---~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP 119 (357)
T 3ec7_A 45 TVSGVEVVAVCD-IVAGRAQAALDKYAIEAKD---YNDYHDLINDKDVEVVIITASNEAHADVAVAALNANKYVFCEKP 119 (357)
T ss_dssp TCTTEEEEEEEC-SSTTHHHHHHHHHTCCCEE---ESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred hCCCcEEEEEEe-CCHHHHHHHHHHhCCCCee---eCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCCEEeecC
Confidence 456788876554 3456667777877753333 3677888884 78777766544445567889999999998654
No 120
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=55.45 E-value=50 Score=25.46 Aligned_cols=105 Identities=7% Similarity=-0.044 Sum_probs=61.9
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEec-CCCCCCchHHHHHHHc-----CCeEEee
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNP-STTDVVCTATAEALAM-----GKIVVCA 331 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~p-S~~E~~~~~~lEAma~-----G~PVV~t 331 (518)
.+++|+.+.+. .+.++...++.|..+.......+..+.+. ..|+.+.- ...+.-|..+++.+.. .+|||..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 83 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAV 83 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEE
Confidence 46677776443 46667777777765554443333334444 34655543 3445567778777653 4777765
Q ss_pred CC-CC---ccccccCCcEEeeC--CHHHHHHHHHHHHhCC
Q 010098 332 NH-PS---NDFFKQFPNCRTYD--GRNGFVEATLKALAEE 365 (518)
Q Consensus 332 ~~-g~---~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~ 365 (518)
.. .. .+.+..|..+++.. +++++.+++.......
T Consensus 84 s~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 84 SGFAKNDLGKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp ECC-CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred ECCcchhHHHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 33 32 33445567777764 9999999999876543
No 121
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=55.00 E-value=65 Score=24.26 Aligned_cols=103 Identities=9% Similarity=-0.044 Sum_probs=57.0
Q ss_pred EEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHH--cCCeEEee-CCC
Q 010098 262 EMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA--MGKIVVCA-NHP 334 (518)
Q Consensus 262 ~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma--~G~PVV~t-~~g 334 (518)
++.++.+.+. .+.++......|..+.......+..+.+. ..|+.+.-. ..+.-|..+++.+. ...|+|.. ...
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 82 (120)
T 2a9o_A 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKD 82 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESCC
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecCC
Confidence 4555555332 34555555656655443332222223332 356655432 23334666666553 56776654 333
Q ss_pred C----ccccccCCcEEeeC--CHHHHHHHHHHHHhC
Q 010098 335 S----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 364 (518)
Q Consensus 335 ~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~ 364 (518)
. ...+..|..+++.. +.+++.+++..++..
T Consensus 83 ~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 83 SEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp SHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred chHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 3 34456678888864 899999999888754
No 122
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=54.92 E-value=42 Score=26.53 Aligned_cols=106 Identities=9% Similarity=-0.030 Sum_probs=60.8
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHhh--cCeeEecCCCCCCchHHHHHHH---cCCeEEee-CC
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPSTTDVVCTATAEALA---MGKIVVCA-NH 333 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~--adv~v~pS~~E~~~~~~lEAma---~G~PVV~t-~~ 333 (518)
.+++++.+.+. ...++...++.|..+.......+..+.+.. .|+.+.-...+.-|..+++.+. ..+|||.. ..
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~~~~pii~ls~~ 84 (142)
T 2qxy_A 5 PTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEFPDTKVAVLSAY 84 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHCCCCCEEEEECC
Confidence 56677765433 355666666667655544333333344433 4655543322334555565553 36787665 33
Q ss_pred CC----ccccccCCcEEeeC--CHHHHHHHHHHHHhCCC
Q 010098 334 PS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEP 366 (518)
Q Consensus 334 g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~ 366 (518)
.. .+.+..|..+++.. +.+++.++|..++....
T Consensus 85 ~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 85 VDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp CCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence 33 34556677788763 89999999999887544
No 123
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=53.93 E-value=53 Score=31.26 Aligned_cols=72 Identities=13% Similarity=0.133 Sum_probs=50.0
Q ss_pred hcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 257 ELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 257 ~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
+.++++++-+-+ .+.+..++.+++++... .+.+.++++. ..|+.+..+....-.-.+.+|+..|++|++-..
T Consensus 23 ~~~~~~l~av~d-~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP 96 (344)
T 3ezy_A 23 MIDDAILYAISD-VREDRLREMKEKLGVEK----AYKDPHELIEDPNVDAVLVCSSTNTHSELVIACAKAKKHVFCEKP 96 (344)
T ss_dssp GSTTEEEEEEEC-SCHHHHHHHHHHHTCSE----EESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESC
T ss_pred hCCCcEEEEEEC-CCHHHHHHHHHHhCCCc----eeCCHHHHhcCCCCCEEEEcCCCcchHHHHHHHHhcCCeEEEECC
Confidence 356787775554 45677777778777531 2367888888 788777766544444557789999999998754
No 124
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=53.67 E-value=24 Score=28.10 Aligned_cols=107 Identities=9% Similarity=-0.060 Sum_probs=65.5
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHH-cCCeEEEeCCCCChHHHHhh---cCeeEecCC-C-CCCchHHHHHHHc-----CCe
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKK-LKLVVRVYPGRDHADPIFHD---YKVFLNPST-T-DVVCTATAEALAM-----GKI 327 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~-~~l~v~~~~~~~~~~~l~~~---adv~v~pS~-~-E~~~~~~lEAma~-----G~P 327 (518)
..+++|+.+.+. ...++...+. .+..+.......+..+.+.. .|+++.-.. . +.-|..+++.+.. .+|
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ 83 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTP 83 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCC
Confidence 356777776443 4566677776 67665544433333333333 566665433 3 3456777777654 678
Q ss_pred EEee-CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhCCC
Q 010098 328 VVCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEP 366 (518)
Q Consensus 328 VV~t-~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~ 366 (518)
||.. .... .+.+..|..+++.. +.+++.++|..++....
T Consensus 84 ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 84 VIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQ 129 (140)
T ss_dssp EEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC--
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcc
Confidence 7765 3332 45567788888874 88999999999987544
No 125
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=53.13 E-value=31 Score=25.92 Aligned_cols=102 Identities=10% Similarity=0.012 Sum_probs=58.1
Q ss_pred EEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHH-----cCCeEEee-
Q 010098 262 EMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA-----MGKIVVCA- 331 (518)
Q Consensus 262 ~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma-----~G~PVV~t- 331 (518)
+++++.+.+. .+.+....+..|..+.......+..+.+. ..|+.+.-. ..+.-|..+++.+. ..+|+|..
T Consensus 3 ~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~ 82 (119)
T 2j48_A 3 HILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFL 82 (119)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEe
Confidence 4566665433 35566666666766554443333333333 346655433 33445677777775 45776654
Q ss_pred CCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 332 NHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 332 ~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
+.+. .+....|..+++.. +.+++.+.+..++.
T Consensus 83 ~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 83 GEPPVDPLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp SSCCSSHHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred CCCCchhhhhcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 3332 34445566777753 88889888887654
No 126
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=53.05 E-value=55 Score=25.30 Aligned_cols=105 Identities=8% Similarity=-0.036 Sum_probs=60.2
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHHc---CCeEEee-
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM---GKIVVCA- 331 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~---G~PVV~t- 331 (518)
..+++++.+.+. .+.++...++.|..+.......+..+.+. ..|+.+.-. ..+.-|..+++.+.. ..|||..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t 86 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVIS 86 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 467778876443 45667777777766555433333334443 246665543 344457777776653 4676554
Q ss_pred CCCC----ccccccCCcEEeeC---CHHHHHHHHHHHHhC
Q 010098 332 NHPS----NDFFKQFPNCRTYD---GRNGFVEATLKALAE 364 (518)
Q Consensus 332 ~~g~----~e~i~~~~~g~~~~---d~~~l~~~i~~ll~~ 364 (518)
.... .+.+..|..+++.. +.+.+.+.+..++..
T Consensus 87 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 87 ATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp CCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC-
T ss_pred cCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhch
Confidence 3333 45567788888852 788999999998764
No 127
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=53.01 E-value=62 Score=25.46 Aligned_cols=102 Identities=6% Similarity=-0.082 Sum_probs=53.2
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHH-----cCCeEEee
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA-----MGKIVVCA 331 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma-----~G~PVV~t 331 (518)
.+++|+.+.+. .+.+....++. ..+.......+..+.+. ..|+++.-. ..+.-|..+++.+. ...|||..
T Consensus 4 ~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 82 (140)
T 3n53_A 4 KKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL 82 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEE
Confidence 45666665332 34445544444 33333332222223333 346655443 34445666777665 46777654
Q ss_pred -CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 332 -NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 332 -~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
.... .+.+..|..+++.. +.+++.++|..++.
T Consensus 83 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 121 (140)
T 3n53_A 83 FSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLR 121 (140)
T ss_dssp ECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHh
Confidence 3322 45566778888864 99999999998875
No 128
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=52.94 E-value=79 Score=24.56 Aligned_cols=103 Identities=10% Similarity=0.012 Sum_probs=60.0
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHH---cCCeEEee-C
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA---MGKIVVCA-N 332 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma---~G~PVV~t-~ 332 (518)
.+++++.+.+. .+.++...+..|..+.......+..+.+. ..|+.+.-. ..+.-|..+++.+. .+.|+|.. .
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTG 83 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEES
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEec
Confidence 45666665433 35556666666665543333223333333 346665532 23344666666653 36777654 3
Q ss_pred CCC----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 333 HPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 333 ~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
... .+.+..|..+++.. +.+++.++|..++.
T Consensus 84 ~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 84 YASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp CCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHh
Confidence 332 45566788888864 89999999988764
No 129
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=52.75 E-value=82 Score=24.74 Aligned_cols=102 Identities=9% Similarity=-0.010 Sum_probs=58.3
Q ss_pred EEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHH---cCCeEEee-CC
Q 010098 262 EMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA---MGKIVVCA-NH 333 (518)
Q Consensus 262 ~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma---~G~PVV~t-~~ 333 (518)
+++++.+.+. .+.++......|..+.......+..+.+. ..|+.+.-. ..+.-|..+++.+. ...|||.. ..
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~ 85 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAH 85 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEESS
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEec
Confidence 5677776554 34555555555554443332222223333 357666543 23445667777664 35676654 33
Q ss_pred CC----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 334 PS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 334 g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
.. .+.+..|..+++.. +.+++...|..++.
T Consensus 86 ~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 86 GSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLK 121 (137)
T ss_dssp CCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 32 45556788888864 88999988887653
No 130
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=52.64 E-value=12 Score=30.55 Aligned_cols=40 Identities=23% Similarity=0.187 Sum_probs=31.5
Q ss_pred ccEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 5 QQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 5 ~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
.+|++|+.++. |+....+...+.++...++.| |+|+|+..
T Consensus 15 ~~kl~ii~~sg-P~~~~~~~~al~lA~~A~a~g-~eV~vFf~ 54 (134)
T 3mc3_A 15 XXXILIVVTHG-PEDLDRTYAPLFMASISASME-YETSVFFM 54 (134)
T ss_dssp CCEEEEEECCC-GGGTHHHHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred cceEEEEEccC-CCCHHHHHHHHHHHHHHHHCC-CCEEEEEE
Confidence 37899988875 666666677788888788887 99999866
No 131
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=52.08 E-value=46 Score=31.91 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=49.5
Q ss_pred hcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 257 ELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 257 ~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
..++++++-+-+ .+.+..++.++++++.. +.+.++++. ..|+.+..+....-.-.+.+|+..|++|++-..
T Consensus 49 ~~~~~~l~av~d-~~~~~~~~~a~~~g~~~-----~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP 121 (350)
T 3rc1_A 49 AEPLTEVTAIAS-RRWDRAKRFTERFGGEP-----VEGYPALLERDDVDAVYVPLPAVLHAEWIDRALRAGKHVLAEKP 121 (350)
T ss_dssp HCTTEEEEEEEE-SSHHHHHHHHHHHCSEE-----EESHHHHHTCTTCSEEEECCCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred hCCCeEEEEEEc-CCHHHHHHHHHHcCCCC-----cCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHCCCcEEEeCC
Confidence 356788775544 45677778888888642 267888887 478777666544444557789999999998643
No 132
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=51.75 E-value=75 Score=23.98 Aligned_cols=102 Identities=5% Similarity=-0.073 Sum_probs=57.7
Q ss_pred EEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEec-CCCCCCchHHHHHHH---cCCeEEee-CC
Q 010098 262 EMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNP-STTDVVCTATAEALA---MGKIVVCA-NH 333 (518)
Q Consensus 262 ~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~p-S~~E~~~~~~lEAma---~G~PVV~t-~~ 333 (518)
++.++.+.+. ...+....+..|..+.......+..+.+. ..|+.+.- ...+.-|..+++.+. ...|+|.. ..
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 81 (121)
T 2pl1_A 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTAR 81 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESC
T ss_pred eEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecC
Confidence 3455554332 34555566666655443333223333333 24665543 233445677777765 35676654 33
Q ss_pred CC----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 334 PS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 334 g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
+. .+.+..|..+++.. +.+++...+..++.
T Consensus 82 ~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 117 (121)
T 2pl1_A 82 ESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 (121)
T ss_dssp CCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHH
Confidence 33 45566788888864 89999999988764
No 133
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=51.72 E-value=82 Score=30.26 Aligned_cols=92 Identities=14% Similarity=0.089 Sum_probs=58.9
Q ss_pred cEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhh--cCeeEe
Q 010098 230 KGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLN 307 (518)
Q Consensus 230 ~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~--adv~v~ 307 (518)
..+..+|-- .-+...++.++. .++++++-+-+ .+.+..++.+++++.. . .+.+.++++.. .|+.+.
T Consensus 27 irvgiiG~G--~~~~~~~~~~~~-----~~~~~lvav~d-~~~~~a~~~a~~~~~~-~---~~~~~~~ll~~~~vD~V~I 94 (361)
T 3u3x_A 27 LRFAAVGLN--HNHIYGQVNCLL-----RAGARLAGFHE-KDDALAAEFSAVYADA-R---RIATAEEILEDENIGLIVS 94 (361)
T ss_dssp CEEEEECCC--STTHHHHHHHHH-----HTTCEEEEEEC-SCHHHHHHHHHHSSSC-C---EESCHHHHHTCTTCCEEEE
T ss_pred cEEEEECcC--HHHHHHHHHHhh-----cCCcEEEEEEc-CCHHHHHHHHHHcCCC-c---ccCCHHHHhcCCCCCEEEE
Confidence 345566631 224444555552 25788877765 5677778888887632 1 24688889886 677666
Q ss_pred cCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 308 PSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 308 pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
.+....-.-.+.+|+.+|++|+|-.-
T Consensus 95 ~tp~~~H~~~~~~al~aGkhVl~EKP 120 (361)
T 3u3x_A 95 AAVSSERAELAIRAMQHGKDVLVDKP 120 (361)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEESC
T ss_pred eCChHHHHHHHHHHHHCCCeEEEeCC
Confidence 55433334457889999999998754
No 134
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=51.58 E-value=76 Score=24.02 Aligned_cols=102 Identities=10% Similarity=-0.053 Sum_probs=58.7
Q ss_pred EEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHH--cCCeEEee-CCC
Q 010098 262 EMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA--MGKIVVCA-NHP 334 (518)
Q Consensus 262 ~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma--~G~PVV~t-~~g 334 (518)
++.++.+.+. .+.+.......|..+.......+..+.+. ..|+.+.-. ..+.-|..+++.+. ...|+|.. ...
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 83 (122)
T 1zgz_A 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRS 83 (122)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESSC
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECCC
Confidence 5566665332 35556666666665544333223333333 356655432 33445667777764 35676654 333
Q ss_pred C----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 335 S----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 335 ~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
. .+.+..|..+++.. +.+++...+..++.
T Consensus 84 ~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 118 (122)
T 1zgz_A 84 DRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 (122)
T ss_dssp CHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHH
Confidence 3 34456678888864 89999999988764
No 135
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=51.31 E-value=50 Score=26.59 Aligned_cols=106 Identities=9% Similarity=0.015 Sum_probs=59.3
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHH-cCCeEE-EeCCCCChHHHHhh--cCeeEecC-CCCCCchHHHHHHHc---CCeEEe
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKK-LKLVVR-VYPGRDHADPIFHD--YKVFLNPS-TTDVVCTATAEALAM---GKIVVC 330 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~-~~l~v~-~~~~~~~~~~l~~~--adv~v~pS-~~E~~~~~~lEAma~---G~PVV~ 330 (518)
..+++++.+.+. .+.++...++ .+..+. ......+..+.+.. .|+++.-. ..+.-|..+++.+.. .+|||.
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILI 84 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEE
Confidence 356677765333 3445555544 343333 22222233333332 46665532 334456666666543 577665
Q ss_pred e-CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhCC
Q 010098 331 A-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEE 365 (518)
Q Consensus 331 t-~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~ 365 (518)
. .... .+.+..|..+++.. +.+++.++|..++...
T Consensus 85 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 126 (153)
T 3cz5_A 85 FTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGR 126 (153)
T ss_dssp EESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTC
T ss_pred EECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCC
Confidence 4 3332 45566788888864 8899999999987643
No 136
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=50.83 E-value=57 Score=31.07 Aligned_cols=70 Identities=14% Similarity=0.111 Sum_probs=48.4
Q ss_pred CCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhh--cCeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 259 AGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 259 ~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~--adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
++++++-+-+ .+.+..++.+++++.. .+ +.+.++++.. .|+.+..+....-.-.+.+|+..|++|++-..
T Consensus 43 ~~~~lvav~d-~~~~~~~~~a~~~~~~-~~---~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKP 114 (340)
T 1zh8_A 43 HLFEITAVTS-RTRSHAEEFAKMVGNP-AV---FDSYEELLESGLVDAVDLTLPVELNLPFIEKALRKGVHVICEKP 114 (340)
T ss_dssp TTEEEEEEEC-SSHHHHHHHHHHHSSC-EE---ESCHHHHHHSSCCSEEEECCCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred CceEEEEEEc-CCHHHHHHHHHHhCCC-cc---cCCHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHCCCcEEEeCC
Confidence 6788876665 4567778888887752 22 3678888874 68766665444334556789999999999643
No 137
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=50.76 E-value=1.2e+02 Score=26.22 Aligned_cols=104 Identities=10% Similarity=-0.052 Sum_probs=63.0
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEec-CCCCCCchHHHHHHH---cCCeEEee-
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNP-STTDVVCTATAEALA---MGKIVVCA- 331 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~p-S~~E~~~~~~lEAma---~G~PVV~t- 331 (518)
..++.++.+.+. .+.+....+..|..+.......+..+.+. ..|+.+.- ...+.-|..+++.+. ..+|||..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~lt 86 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLS 86 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 356777776443 35566666666765543333223333333 34666543 334445777777764 46787654
Q ss_pred CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 332 NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 332 ~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
.... .+.+..|..+++.. +++++..+|..++.
T Consensus 87 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (233)
T 1ys7_A 87 ARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLR 124 (233)
T ss_dssp CCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 3322 55667788888864 89999999988764
No 138
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=50.54 E-value=82 Score=24.31 Aligned_cols=104 Identities=11% Similarity=-0.003 Sum_probs=63.9
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCe-EEEeCCCCChHHHHh---hcCeeEec-CCCCCCchHHHHHHHc-----CCeEE
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLV-VRVYPGRDHADPIFH---DYKVFLNP-STTDVVCTATAEALAM-----GKIVV 329 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~-v~~~~~~~~~~~l~~---~adv~v~p-S~~E~~~~~~lEAma~-----G~PVV 329 (518)
.++.++.+.+. .+.++...++.|.. +.......+..+.+. ..|+.+.- ...+.-|..+++.+.. .+|||
T Consensus 6 ~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pii 85 (129)
T 3h1g_A 6 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPII 85 (129)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeEE
Confidence 56777776443 45666777777754 333332222223332 35666643 3345567888888753 56766
Q ss_pred ee-CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhC
Q 010098 330 CA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 364 (518)
Q Consensus 330 ~t-~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~ 364 (518)
.. .... .+.+..|..+++.. +++++.++|..++..
T Consensus 86 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 86 MITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp EEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred EEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 54 3333 45567788888874 999999999998864
No 139
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=50.19 E-value=93 Score=24.82 Aligned_cols=107 Identities=14% Similarity=-0.018 Sum_probs=59.3
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCCeEE--EeCCCCChHHHHh--hcCeeEec-CCCCCCchHHHHHHHc---CCeEEe
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKLVVR--VYPGRDHADPIFH--DYKVFLNP-STTDVVCTATAEALAM---GKIVVC 330 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l~v~--~~~~~~~~~~l~~--~adv~v~p-S~~E~~~~~~lEAma~---G~PVV~ 330 (518)
..+++|+.+.+. .+.++....+.+.... ......+..+.+. ..|+.+.- ...+.-|..+++.+.. ..|||.
T Consensus 15 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 94 (152)
T 3eul_A 15 KVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLL 94 (152)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEE
T ss_pred eEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEE
Confidence 456666665332 3445555555553211 1222222223332 34655543 3344556677766643 566665
Q ss_pred e-CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhCCC
Q 010098 331 A-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEP 366 (518)
Q Consensus 331 t-~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~ 366 (518)
. .... .+.+..|..+++.. +.+++.++|..++....
T Consensus 95 ~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 137 (152)
T 3eul_A 95 ISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRD 137 (152)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC-
T ss_pred EEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCe
Confidence 4 3333 35567788888874 89999999999987654
No 140
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=50.14 E-value=28 Score=27.47 Aligned_cols=105 Identities=8% Similarity=0.004 Sum_probs=61.5
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcC-CeEEEeCCCCChHHHHh--hcCeeEec-CCCCCCchHHHHHHHc---CCeEEee
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLK-LVVRVYPGRDHADPIFH--DYKVFLNP-STTDVVCTATAEALAM---GKIVVCA 331 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~-l~v~~~~~~~~~~~l~~--~adv~v~p-S~~E~~~~~~lEAma~---G~PVV~t 331 (518)
..+++++.+.+. .+.++...+..| ..+.......+..+.+. ..|+.+.- ...+.-|..+++.+.. .+|||..
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 93 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLGGGDLLGKPGIVEARALWATVPLIAV 93 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEETTGGGGSTTHHHHHGGGTTCCEEEE
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCCCCCchHHHHHHHHHhhCCCCcEEEE
Confidence 357777776443 456677777777 65554443333333333 34655543 2333445555655543 5777654
Q ss_pred -CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhC
Q 010098 332 -NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 364 (518)
Q Consensus 332 -~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~ 364 (518)
.... .+.+..|..+++.. +++++..+|..++..
T Consensus 94 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 94 SDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred eCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 3333 45566788888874 999999999987653
No 141
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=50.04 E-value=85 Score=24.12 Aligned_cols=105 Identities=8% Similarity=0.001 Sum_probs=60.1
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh---hcCeeEecC-CCC-CCchHHHHHHH---cCCeEEe
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH---DYKVFLNPS-TTD-VVCTATAEALA---MGKIVVC 330 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~---~adv~v~pS-~~E-~~~~~~lEAma---~G~PVV~ 330 (518)
..+++++.+.+. .+.+.......|..+.......+..+.+. ..|+.+.-. ..+ .-|..+++.+. ..+|||.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~ 84 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVY 84 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 456777776443 35566666666766554433333334443 357665533 333 45666776664 3677765
Q ss_pred e-CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhCCC
Q 010098 331 A-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEP 366 (518)
Q Consensus 331 t-~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~ 366 (518)
. .... .+.+.. ++++.. +.+++.++|.+++....
T Consensus 85 ~s~~~~~~~~~~~~~~--~~~l~kP~~~~~l~~~i~~~~~~~~ 125 (132)
T 2rdm_A 85 ISGHAALEWASNGVPD--SIILEKPFTSAQLITAVSQLLNARE 125 (132)
T ss_dssp EESSCCTTHHHHSCTT--CEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred EeCCccHHHHHhhcCC--cceEeCCCCHHHHHHHHHHHHhcCC
Confidence 4 3332 222222 256653 89999999999887654
No 142
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=49.75 E-value=62 Score=25.55 Aligned_cols=104 Identities=10% Similarity=0.021 Sum_probs=62.5
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCC--eEEEeCCCCChHHHHh------------hcCeeEecC-CCCCCchHHHHHHH
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKL--VVRVYPGRDHADPIFH------------DYKVFLNPS-TTDVVCTATAEALA 323 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l--~v~~~~~~~~~~~l~~------------~adv~v~pS-~~E~~~~~~lEAma 323 (518)
..+++++.+.+. ...++...++.+. .+.......+..+.+. ..|+.+.-. ..+.-|..+++.+.
T Consensus 6 ~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~ 85 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIK 85 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHT
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHH
Confidence 355667665433 3556666676665 3444444344444444 346665543 34445777777775
Q ss_pred -----cCCeEEee-CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 324 -----MGKIVVCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 324 -----~G~PVV~t-~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
..+|||.. .... .+.+..|..+++.. +.+++.+.|..++.
T Consensus 86 ~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 86 QDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp TSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred hCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 35676654 3333 45556778888864 88999998888764
No 143
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=49.71 E-value=14 Score=34.57 Aligned_cols=40 Identities=10% Similarity=-0.006 Sum_probs=24.8
Q ss_pred ccccEEEEEeeccCCcccccccchHH-HHHHHHhcCCeeEEEEe
Q 010098 3 RKQQHIAIFTTASLPWLTGTAVNPLF-RAAYLAKDGERRVTLVI 45 (518)
Q Consensus 3 ~~~~rI~ivt~~~~P~~~G~~~~~~~-~a~~L~~~gg~~V~vi~ 45 (518)
+++|||+||... |...+....+.. ..+.|.+.| |+|+++-
T Consensus 20 m~~MKiLII~aH--P~~~S~n~aL~~~~~~~l~~~G-~eV~v~D 60 (280)
T 4gi5_A 20 FQSMKVLLIYAH--PEPRSLNGALKNFAIRHLQQAG-HEVQVSD 60 (280)
T ss_dssp --CCEEEEEECC--SCTTSHHHHHHHHHHHHHHHTT-CEEEEEE
T ss_pred hhCCeEEEEEeC--CCCccHHHHHHHHHHHHHHHCC-CeEEEEE
Confidence 466999999765 554442222222 337787887 9999984
No 144
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=49.56 E-value=50 Score=25.37 Aligned_cols=100 Identities=6% Similarity=-0.116 Sum_probs=59.7
Q ss_pred EEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh-----hcCeeEecC-CCCCCchHHHHHHH-----cCCeEE
Q 010098 262 EMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH-----DYKVFLNPS-TTDVVCTATAEALA-----MGKIVV 329 (518)
Q Consensus 262 ~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~-----~adv~v~pS-~~E~~~~~~lEAma-----~G~PVV 329 (518)
++.++.+.+. .+.+....+..|..+... .+..+.+. ..|+.+.-. ..+.-|..+++.+. .+.|||
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~---~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 80 (127)
T 2jba_A 4 RILVVEDEAPIREMVCFVLEQNGFQPVEA---EDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVV 80 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEE---CSHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEE
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCceEEEe---CCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEE
Confidence 5666665433 355566666666654432 23333332 246655432 23345677777775 357766
Q ss_pred ee-CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhC
Q 010098 330 CA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 364 (518)
Q Consensus 330 ~t-~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~ 364 (518)
.- .... .+.+..|..+++.. +.+++.+++..++..
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 81 MLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp EEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhc
Confidence 54 3332 45667778888863 999999999988764
No 145
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=49.52 E-value=97 Score=28.31 Aligned_cols=64 Identities=13% Similarity=-0.045 Sum_probs=36.1
Q ss_pred hcCee-EecCCCCCCchHHHHHHHcCCeEEeeCCCCccccc-cCCcEEeeCCHHHHHHHHHHHHhC
Q 010098 301 DYKVF-LNPSTTDVVCTATAEALAMGKIVVCANHPSNDFFK-QFPNCRTYDGRNGFVEATLKALAE 364 (518)
Q Consensus 301 ~adv~-v~pS~~E~~~~~~lEAma~G~PVV~t~~g~~e~i~-~~~~g~~~~d~~~l~~~i~~ll~~ 364 (518)
..|.+ +.|...+...-.+-++...|+|||+.+......-. .....+..++.+.-..+.+.+++.
T Consensus 61 ~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~ 126 (297)
T 3rot_A 61 YPSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTRPKDKTKNPYLVFLGSDNLLAGKKLGEKALEL 126 (297)
T ss_dssp CCSEEEECCCCSSTTHHHHHHHHHHTCCEEEESCCCSCTTTSCCSCEEECCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcCCCccccccCcceEEccChHHHHHHHHHHHHHh
Confidence 45644 44555555555566778899999999875422100 112233345666555555555554
No 146
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=49.34 E-value=16 Score=29.94 Aligned_cols=43 Identities=16% Similarity=0.045 Sum_probs=30.0
Q ss_pred CCcccc-EEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQQ-HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~-rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|+.. | |++|+.+.. |+.+-.+...+..+..+...| ++|.|+-.
T Consensus 1 ~~~~-Mkk~~ivv~~~-P~g~~~~~~al~~a~a~~a~~-~~v~Vff~ 44 (136)
T 2hy5_B 1 MSEV-VKKFMYLNRKA-PYGTIYAWEALEVVLIGAAFD-QDVCVLFL 44 (136)
T ss_dssp -----CCEEEEEECSC-TTTSSHHHHHHHHHHHHGGGC-CEEEEEEC
T ss_pred Cccc-hhEEEEEEeCC-CCCcHHHHHHHHHHHHHHhCC-CCEEEEEE
Confidence 5444 5 699888665 876555666788888888888 99999865
No 147
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=49.11 E-value=58 Score=30.65 Aligned_cols=70 Identities=13% Similarity=0.217 Sum_probs=47.4
Q ss_pred cCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHH-hhcCeeEecCCCCCCchHHHHHHHcCCeEEeeC
Q 010098 258 LAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIF-HDYKVFLNPSTTDVVCTATAEALAMGKIVVCAN 332 (518)
Q Consensus 258 ~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~-~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~ 332 (518)
.++++++.+-+ .+.+..++.+++++.. .. +.+.++++ ...|+.+..+....-.-.+.+|+..|++|++-.
T Consensus 23 ~~~~~~~~v~d-~~~~~~~~~~~~~~~~-~~---~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~al~~gk~V~~EK 93 (325)
T 2ho3_A 23 SGEYQLVAIYS-RKLETAATFASRYQNI-QL---FDQLEVFFKSSFDLVYIASPNSLHFAQAKAALSAGKHVILEK 93 (325)
T ss_dssp TTSEEEEEEEC-SSHHHHHHHGGGSSSC-EE---ESCHHHHHTSSCSEEEECSCGGGHHHHHHHHHHTTCEEEEES
T ss_pred CCCeEEEEEEe-CCHHHHHHHHHHcCCC-eE---eCCHHHHhCCCCCEEEEeCChHHHHHHHHHHHHcCCcEEEec
Confidence 45677765544 4566667777776642 22 35677888 578877776655444556778999999999864
No 148
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=48.51 E-value=1.1e+02 Score=29.10 Aligned_cols=79 Identities=8% Similarity=0.135 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCe--EEEeCCCCChHHHHh--hcCeeEecCCCCCCchHHHHH
Q 010098 246 ELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEA 321 (518)
Q Consensus 246 ~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~--v~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEA 321 (518)
.+++++ ...++++++.+-+ .+.+..++.++++++. ... +.+.+++++ ..|+.+..+....-.-.+.+|
T Consensus 20 ~~~~~l----~~~~~~~lv~v~d-~~~~~~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~a 91 (362)
T 1ydw_A 20 KVSRAI----HLAPNATISGVAS-RSLEKAKAFATANNYPESTKI---HGSYESLLEDPEIDALYVPLPTSLHVEWAIKA 91 (362)
T ss_dssp HHHHHH----HHCTTEEEEEEEC-SSHHHHHHHHHHTTCCTTCEE---ESSHHHHHHCTTCCEEEECCCGGGHHHHHHHH
T ss_pred HHHHHH----hhCCCcEEEEEEc-CCHHHHHHHHHHhCCCCCCee---eCCHHHHhcCCCCCEEEEcCChHHHHHHHHHH
Confidence 345554 2346788776655 4566777888887752 222 256778887 478777766544445567789
Q ss_pred HHcCCeEEeeC
Q 010098 322 LAMGKIVVCAN 332 (518)
Q Consensus 322 ma~G~PVV~t~ 332 (518)
+..|++|++-.
T Consensus 92 l~aGk~V~~EK 102 (362)
T 1ydw_A 92 AEKGKHILLEK 102 (362)
T ss_dssp HTTTCEEEECS
T ss_pred HHCCCeEEEec
Confidence 99999999853
No 149
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=48.22 E-value=66 Score=25.82 Aligned_cols=107 Identities=8% Similarity=-0.093 Sum_probs=60.5
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHc-CC-eEEEeCCCCChHHHHhh---cCeeEecC-CCCCCchHHHHHHH---cCCeEE
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKL-KL-VVRVYPGRDHADPIFHD---YKVFLNPS-TTDVVCTATAEALA---MGKIVV 329 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~-~l-~v~~~~~~~~~~~l~~~---adv~v~pS-~~E~~~~~~lEAma---~G~PVV 329 (518)
..+++++.+.+. ...++...+.. +. .+.......+..+.+.. .|+++.-. ..+.-|..+++.+. ..+|||
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 82 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVA 82 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEE
Confidence 356777766443 35566666665 54 23334443444455544 56666543 23334666666664 367877
Q ss_pred eeC-CCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhCCC
Q 010098 330 CAN-HPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEP 366 (518)
Q Consensus 330 ~t~-~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~ 366 (518)
... ... .+.+..|..+++.. +.+++.++|..++....
T Consensus 83 ~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~ 126 (154)
T 2qsj_A 83 LISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEI 126 (154)
T ss_dssp EC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCC
T ss_pred EEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCE
Confidence 653 322 44556677788763 89999999999887654
No 150
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=47.98 E-value=97 Score=24.25 Aligned_cols=104 Identities=9% Similarity=0.007 Sum_probs=63.6
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCC--eEEEeCCCCChHHHHhh--------cCeeEec-CCCCCCchHHHHHHH----
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKL--VVRVYPGRDHADPIFHD--------YKVFLNP-STTDVVCTATAEALA---- 323 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l--~v~~~~~~~~~~~l~~~--------adv~v~p-S~~E~~~~~~lEAma---- 323 (518)
..+++++.+.+. .+.+....++.+. .+.......+..+.+.. .|+.+.- ...+.-|..+++.+.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~ 86 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSS 86 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCcc
Confidence 356777776443 4566666676665 45554444444455543 5766554 333445777777775
Q ss_pred -cCCeEEee-CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 324 -MGKIVVCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 324 -~G~PVV~t-~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
..+|||.. .... .+.+..|..+++.. +.+++.+++.....
T Consensus 87 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 87 FTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp GTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred ccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 46786654 3332 45566778888864 89999988776544
No 151
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=47.55 E-value=68 Score=30.46 Aligned_cols=71 Identities=18% Similarity=0.195 Sum_probs=50.0
Q ss_pred hcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 257 ELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 257 ~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
+.++++++-+-+ .+.+..++.+++++. .. +.+.++++. ..|+.+..+....-.-.+.+|+..|++|++-..
T Consensus 25 ~~~~~~l~av~d-~~~~~~~~~a~~~g~--~~---~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP 97 (344)
T 3euw_A 25 ANPDLELVVIAD-PFIEGAQRLAEANGA--EA---VASPDEVFARDDIDGIVIGSPTSTHVDLITRAVERGIPALCEKP 97 (344)
T ss_dssp HCTTEEEEEEEC-SSHHHHHHHHHTTTC--EE---ESSHHHHTTCSCCCEEEECSCGGGHHHHHHHHHHTTCCEEECSC
T ss_pred hCCCcEEEEEEC-CCHHHHHHHHHHcCC--ce---eCCHHHHhcCCCCCEEEEeCCchhhHHHHHHHHHcCCcEEEECC
Confidence 356788775554 456777788887773 22 367888888 788777766544445567889999999998654
No 152
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=47.45 E-value=86 Score=29.88 Aligned_cols=69 Identities=13% Similarity=0.091 Sum_probs=48.5
Q ss_pred CCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 259 AGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 259 ~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
++++++-+-+ .+.+..++.+++++. .. +.+.++++. ..|+.+..+....-.-.+.+|+..|++|++-..
T Consensus 37 ~~~~lvav~d-~~~~~~~~~~~~~~~--~~---~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP 107 (354)
T 3q2i_A 37 DRAELIDVCD-IDPAALKAAVERTGA--RG---HASLTDMLAQTDADIVILTTPSGLHPTQSIECSEAGFHVMTEKP 107 (354)
T ss_dssp TTEEEEEEEC-SSHHHHHHHHHHHCC--EE---ESCHHHHHHHCCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSS
T ss_pred CCeEEEEEEc-CCHHHHHHHHHHcCC--ce---eCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHCCCCEEEeCC
Confidence 5788775554 456777788887775 22 367888887 678777665544444457889999999998643
No 153
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=47.44 E-value=87 Score=29.64 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=47.3
Q ss_pred hcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecCCCCCCchHHHHHHHcCCeEEee
Q 010098 257 ELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCA 331 (518)
Q Consensus 257 ~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVV~t 331 (518)
..++++++.+-+ .+.+..++.+++++.. .+ +.+.++++. ..|+.+..+....-.-.+.+|+..|++|++-
T Consensus 30 ~~~~~~~vav~d-~~~~~~~~~a~~~g~~-~~---~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~G~~v~~e 101 (346)
T 3cea_A 30 KIQGVKLVAACA-LDSNQLEWAKNELGVE-TT---YTNYKDMIDTENIDAIFIVAPTPFHPEMTIYAMNAGLNVFCE 101 (346)
T ss_dssp TCSSEEEEEEEC-SCHHHHHHHHHTTCCS-EE---ESCHHHHHTTSCCSEEEECSCGGGHHHHHHHHHHTTCEEEEC
T ss_pred cCCCcEEEEEec-CCHHHHHHHHHHhCCC-cc---cCCHHHHhcCCCCCEEEEeCChHhHHHHHHHHHHCCCEEEEc
Confidence 456777766554 4566777777777753 22 256778887 5787776665444445567899999999984
No 154
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=46.85 E-value=1e+02 Score=24.12 Aligned_cols=104 Identities=10% Similarity=0.018 Sum_probs=57.9
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHH--------cCCeE
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA--------MGKIV 328 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma--------~G~PV 328 (518)
.+++++.+.+. ...+....+..+..+.......+..+.+. ..|+.+.-. ..+.-|..+++.+. ...|+
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~i 90 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRASI 90 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCceEE
Confidence 46777765433 34455555555555544432222223333 357666543 23334667777664 24566
Q ss_pred Eee-CCCC-ccccccCCcEEeeC--CHHHHHHHHHHHHhC
Q 010098 329 VCA-NHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAE 364 (518)
Q Consensus 329 V~t-~~g~-~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~ 364 (518)
|.. .... ......+..+++.. +.+++.++|..++..
T Consensus 91 i~~s~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 130 (140)
T 3c97_A 91 IAITADTIDDDRPGAELDEYVSKPLNPNQLRDVVLTCHSE 130 (140)
T ss_dssp EEEESSCCSCCCCCSSCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred EEEeCccchhHHHhCChhheEeCCCCHHHHHHHHHHHhCC
Confidence 554 3332 33335566778864 999999999998753
No 155
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=46.77 E-value=21 Score=31.69 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=29.4
Q ss_pred CCccccEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|.++ +||++-.+.. .| +.....+.+.|.+.| ++|.++.+
T Consensus 1 m~~~-k~IllgvTGa----ia-a~k~~~ll~~L~~~g-~eV~vv~T 39 (209)
T 3zqu_A 1 MSGP-ERITLAMTGA----SG-AQYGLRLLDCLVQEE-REVHFLIS 39 (209)
T ss_dssp CCSC-SEEEEEECSS----SC-HHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred CCCC-CEEEEEEECH----HH-HHHHHHHHHHHHHCC-CEEEEEEC
Confidence 6666 7887776654 23 555677889999987 99999977
No 156
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=46.52 E-value=64 Score=25.60 Aligned_cols=105 Identities=13% Similarity=0.079 Sum_probs=57.1
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcC-CeEEEeCCCC-ChHHHH---hhcCeeEecC-CCCCCchHHHHHHHc---CCeEEe
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLK-LVVRVYPGRD-HADPIF---HDYKVFLNPS-TTDVVCTATAEALAM---GKIVVC 330 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~-l~v~~~~~~~-~~~~l~---~~adv~v~pS-~~E~~~~~~lEAma~---G~PVV~ 330 (518)
.+++|+.+.+. .+.++......+ ..+....... ....+. ...|+++.-. ..+.-|..+++.+.. ..|||.
T Consensus 21 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 100 (146)
T 4dad_A 21 INILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGLTCLL 100 (146)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEE
Confidence 45555554332 344455555555 4443322211 111222 3456655433 333445666665543 577665
Q ss_pred e-CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhCC
Q 010098 331 A-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEE 365 (518)
Q Consensus 331 t-~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~ 365 (518)
. .... .+.+..|..+++.. +.+++..+|..++...
T Consensus 101 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 101 VTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp EESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred EeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 4 3332 44566777888864 9999999999988754
No 157
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=46.51 E-value=1e+02 Score=27.44 Aligned_cols=104 Identities=7% Similarity=-0.110 Sum_probs=60.6
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEec-CCCCCCchHHHHHHHc---CCeEEee-
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNP-STTDVVCTATAEALAM---GKIVVCA- 331 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~p-S~~E~~~~~~lEAma~---G~PVV~t- 331 (518)
..++.|+-+.+. .+.+....+..|..+.......+..+.+. ..|+.++- ...+.-|..+++.+.. ..|||.-
T Consensus 23 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt 102 (250)
T 3r0j_A 23 EARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVXMPGMDGFGVLRRLRADGIDAPALFLT 102 (250)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 356666665433 34555555556655443332222223332 34665543 2344457777776643 5676654
Q ss_pred CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 332 NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 332 ~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
.... .+.+..|..+++.. +++++..+|..++.
T Consensus 103 ~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~ 140 (250)
T 3r0j_A 103 ARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILR 140 (250)
T ss_dssp CSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 3333 45567788888874 99999999998875
No 158
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=46.08 E-value=91 Score=23.29 Aligned_cols=101 Identities=8% Similarity=0.062 Sum_probs=56.7
Q ss_pred EEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHH---cCCeEEee-CC
Q 010098 262 EMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA---MGKIVVCA-NH 333 (518)
Q Consensus 262 ~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma---~G~PVV~t-~~ 333 (518)
++.++.+.+. .+.++......|..+.......+..+.+. ..|+.+.-. ..+.-|..+++.+. ...|+|.. ..
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECC
Confidence 4556665333 35556666666665544333223333333 246655432 23345666776664 35676644 33
Q ss_pred CC--ccccccCCcEEeeC--CHHHHHHHHHHHH
Q 010098 334 PS--NDFFKQFPNCRTYD--GRNGFVEATLKAL 362 (518)
Q Consensus 334 g~--~e~i~~~~~g~~~~--d~~~l~~~i~~ll 362 (518)
.. .+....|..+++.. +.+++..++..++
T Consensus 83 ~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 83 SHYRSDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp GGGGGCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred cchHHHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 32 45556677888864 8889999888764
No 159
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=45.88 E-value=80 Score=29.68 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=46.6
Q ss_pred CCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecCCCCCCchHHHHHHHcCCeEEee
Q 010098 259 AGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCA 331 (518)
Q Consensus 259 ~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVV~t 331 (518)
++++++-+-+ .+.+..++.+++++.. ..+.+.++++. ..|+.+..+....-.-.+.+|+..|++|++-
T Consensus 23 ~~~~~vav~d-~~~~~~~~~~~~~g~~----~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~Gk~v~~e 92 (332)
T 2glx_A 23 TGGEVVSMMS-TSAERGAAYATENGIG----KSVTSVEELVGDPDVDAVYVSTTNELHREQTLAAIRAGKHVLCE 92 (332)
T ss_dssp TTCEEEEEEC-SCHHHHHHHHHHTTCS----CCBSCHHHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEC
T ss_pred CCCeEEEEEC-CCHHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEEeCChhHhHHHHHHHHHCCCeEEEe
Confidence 5677765544 4566677777777742 13467788887 4887777665444455677899999999984
No 160
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=45.33 E-value=21 Score=32.86 Aligned_cols=45 Identities=22% Similarity=0.134 Sum_probs=29.9
Q ss_pred CCccccEEEEEeecc------CCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQQHIAIFTTAS------LPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~rI~ivt~~~------~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|+.+++++|+|.+.. ++...|+..-...+.+.|.+.| ++|++..-
T Consensus 15 m~~~~rg~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LG-F~V~~~~d 65 (259)
T 3sir_A 15 MRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLD-FEVTVYKD 65 (259)
T ss_dssp CCSSEEEEEEEEEECCC-----------CCHHHHHHHHHHHTT-CEEEEEEE
T ss_pred CCCCCccEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCC-CEEEEEeC
Confidence 677778888877542 3455687777888889999998 99998843
No 161
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=45.20 E-value=32 Score=27.17 Aligned_cols=102 Identities=9% Similarity=0.042 Sum_probs=61.7
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh-----hcCeeEec-CCCC--CCchHHHHHHHc---CCeE
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH-----DYKVFLNP-STTD--VVCTATAEALAM---GKIV 328 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~-----~adv~v~p-S~~E--~~~~~~lEAma~---G~PV 328 (518)
.+++|+.+.+. .+.++...++.|..+.... +..+.+. ..|+++.- ...+ .-|..+++.+.. .+||
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~---~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~i 83 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPLDVTIQCFA---SAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPT 83 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSSEEEEES---SHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCcEEEEeC---CHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCE
Confidence 56777776443 3556666666666554333 3333333 23555543 3344 456677776653 5776
Q ss_pred Eee-CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhCC
Q 010098 329 VCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEE 365 (518)
Q Consensus 329 V~t-~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~ 365 (518)
|.. .... .+.+..|..+++.. +.+++.++|.+++...
T Consensus 84 i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 127 (136)
T 3kto_A 84 IVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGA 127 (136)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhcc
Confidence 654 3333 45567788888874 9999999999987643
No 162
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=45.20 E-value=87 Score=23.82 Aligned_cols=103 Identities=8% Similarity=-0.112 Sum_probs=58.0
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHH---cCCeEEee-C
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA---MGKIVVCA-N 332 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma---~G~PVV~t-~ 332 (518)
.++.++.+.+. ...++...+..|..+.......+..+.+. ..|+.+.-. ..+.-|..+++.+. ...|||.. .
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTA 83 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEES
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEc
Confidence 35666665433 34555666655655443332222223333 357665432 23334666666654 46787654 3
Q ss_pred CCC----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 333 HPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 333 ~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
... .+.+..|..+++.. +.+++.+++.+++.
T Consensus 84 ~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 84 YGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp SCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred cCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 333 34456677788763 89999999988765
No 163
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=45.08 E-value=35 Score=28.36 Aligned_cols=90 Identities=13% Similarity=0.235 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCCeEEEeCCCCChH--HHHh----hcC-eeEecCCCCCCchHHHHHH-HcCCeEEeeCCC---Ccc----
Q 010098 273 DQIQRAAKKLKLVVRVYPGRDHAD--PIFH----DYK-VFLNPSTTDVVCTATAEAL-AMGKIVVCANHP---SND---- 337 (518)
Q Consensus 273 ~~l~~~~~~~~l~v~~~~~~~~~~--~l~~----~ad-v~v~pS~~E~~~~~~lEAm-a~G~PVV~t~~g---~~e---- 337 (518)
+.+++.+.++|+.+.++-.-.+-+ +.++ .+| +.++|.-+-..+..+.+|+ +.++|+|=--.. .+|
T Consensus 39 ~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~~~~P~VEVHiSNi~aRE~FRh 118 (153)
T 3lwz_A 39 SQLEIQAQGMDVALSHLQSNAEHALIDSIHQARGNTDFILINPAAFTHTSVALRDALLGVQIPFIEIHLSNVHAREPFRH 118 (153)
T ss_dssp HHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCHHHHHHHHHHTCCEEEEESSCGGGSCGGGG
T ss_pred HHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCceEEEccccceechHHHHHHHHhcCCCEEEEEcCCccccchhhh
Confidence 344555555666655544322222 2332 345 8889987777899999997 578999876443 244
Q ss_pred --ccccCCcEEeeC-CHHHHHHHHHHHH
Q 010098 338 --FFKQFPNCRTYD-GRNGFVEATLKAL 362 (518)
Q Consensus 338 --~i~~~~~g~~~~-d~~~l~~~i~~ll 362 (518)
++.+-..|.+.. -.+...-++..++
T Consensus 119 ~S~~s~~a~GvI~G~G~~gY~lAl~~~~ 146 (153)
T 3lwz_A 119 HSYLSDIAVGVICGLGADGYNFALQAAV 146 (153)
T ss_dssp CCSSGGGSSEEEESSTTHHHHHHHHHHH
T ss_pred cccccccceEEEEecChhHHHHHHHHHH
Confidence 334456777764 4555555554443
No 164
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=44.86 E-value=1.4e+02 Score=25.72 Aligned_cols=104 Identities=10% Similarity=-0.016 Sum_probs=61.3
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEec-CCCCCCchHHHHHHH---cCCeEEee-C
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNP-STTDVVCTATAEALA---MGKIVVCA-N 332 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~p-S~~E~~~~~~lEAma---~G~PVV~t-~ 332 (518)
.++.++.+.+. .+.+.......+..+.......+..+.+. ..|+.+.- ...+.-|..+++.+. ..+|||.. .
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~ 82 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTA 82 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEES
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeC
Confidence 35666665433 35556666666665544332222223333 34665543 233445677777664 36777655 3
Q ss_pred CCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhC
Q 010098 333 HPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 364 (518)
Q Consensus 333 ~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~ 364 (518)
... .+.+..|..+++.. +++++..+|..++..
T Consensus 83 ~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 120 (225)
T 1kgs_A 83 LSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRR 120 (225)
T ss_dssp SCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhh
Confidence 332 45667788888864 899999999988753
No 165
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=44.84 E-value=29 Score=30.71 Aligned_cols=40 Identities=23% Similarity=0.193 Sum_probs=28.4
Q ss_pred CCccccEEEEEeeccCCcccccccc-hHHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQQHIAIFTTASLPWLTGTAVN-PLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~rI~ivt~~~~P~~~G~~~~-~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|.-+++||++-.+.. +.+.. ...+.+.|.+.| ++|.++.+
T Consensus 1 m~l~~k~IllgiTGs-----iaayk~~~~ll~~L~~~g-~eV~vv~T 41 (207)
T 3mcu_A 1 MSLKGKRIGFGFTGS-----HCTYEEVMPHLEKLIAEG-AEVRPVVS 41 (207)
T ss_dssp -CCTTCEEEEEECSC-----GGGGTTSHHHHHHHHHTT-CEEEEEEC
T ss_pred CCCCCCEEEEEEECh-----HHHHHHHHHHHHHHHhCC-CEEEEEEe
Confidence 544557888877643 22333 678889999998 99999987
No 166
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=44.73 E-value=25 Score=32.30 Aligned_cols=38 Identities=18% Similarity=0.076 Sum_probs=26.7
Q ss_pred cccEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccC
Q 010098 4 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWL 48 (518)
Q Consensus 4 ~~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~ 48 (518)
++|||++-.+... .+-.+..+++.|.+ + |+|+|++|..
T Consensus 10 ~~m~ILlTNDDGi-----~apGi~aL~~~l~~-~-~~V~VVAP~~ 47 (261)
T 3ty2_A 10 PKLRLLLSNDDGV-----YAKGLAILAKTLAD-L-GEVDVVAPDR 47 (261)
T ss_dssp -CCEEEEECSSCT-----TCHHHHHHHHHHTT-T-SEEEEEEESS
T ss_pred CCCeEEEEcCCCC-----CCHHHHHHHHHHHh-c-CCEEEEecCC
Confidence 4499988776542 13346777788887 5 8999999944
No 167
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=44.23 E-value=98 Score=26.02 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=45.6
Q ss_pred hcC-eeEecCCCCCCchHHHHHH-HcCCeEEeeCCC---Ccc------ccccCCcEEeeC-CHHHHHHHHHHHHh
Q 010098 301 DYK-VFLNPSTTDVVCTATAEAL-AMGKIVVCANHP---SND------FFKQFPNCRTYD-GRNGFVEATLKALA 363 (518)
Q Consensus 301 ~ad-v~v~pS~~E~~~~~~lEAm-a~G~PVV~t~~g---~~e------~i~~~~~g~~~~-d~~~l~~~i~~ll~ 363 (518)
.+| +.++|.-+--.+..+.+|+ +.++|+|=--.. .+| ++.+-..|.+.. -.+...-++..+++
T Consensus 83 ~~dgIIINpgAyTHtSvAlrDAL~~v~~P~VEVHiSNihaRE~FRh~S~~s~~a~GvI~G~G~~gY~lAl~~l~~ 157 (167)
T 3kip_A 83 GVGFVVINAGAYTHTSVGIRDALLGTAIPFIEVHITNVHQREPFRHQSYLSDKAVAVICGLGVYGYTAAIEYALN 157 (167)
T ss_dssp TCCEEEEECGGGGGTCHHHHHHHHHTTCCEEEEESSCGGGSCGGGGCCSSGGGSSEEEESSTTHHHHHHHHHHTT
T ss_pred CccEEEEccccceeccHHHHHHHHhcCCCEEEEEcCCccccccchhcccccccceEEEEeCChhhHHHHHHHHHH
Confidence 345 7889987777899999997 578999876443 255 555567788875 67777777777664
No 168
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=44.05 E-value=52 Score=29.00 Aligned_cols=96 Identities=18% Similarity=0.107 Sum_probs=57.0
Q ss_pred cCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-hHHHHHHHHHcCCe---EEEeCCCC-ChH-HHHhhcCeeEecC-CCCC
Q 010098 241 SKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLV---VRVYPGRD-HAD-PIFHDYKVFLNPS-TTDV 313 (518)
Q Consensus 241 ~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l~---v~~~~~~~-~~~-~l~~~adv~v~pS-~~E~ 313 (518)
.|=++.|.+|+.-+..- ..-++.++|.... .+.+++.+++-|.. .+|.||.- +-. +-+..=|+.+... ..|
T Consensus 50 ~kT~~~L~~A~~~i~~i-~~~~iLfVgTk~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~~~~f~~PdlliV~Dp~~e- 127 (208)
T 1vi6_A 50 RKLDERIRVAAKFLSRY-EPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVNDPAID- 127 (208)
T ss_dssp HHHHHHHHHHHHHHTTS-CGGGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTTTTCTTSTTCCCCSEEEESCTTTT-
T ss_pred HHHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhCCeeecCEECCCcccChhhHhhCCCCEEEEECCCcc-
Confidence 44456666666666544 4567888898555 35567777777754 22455421 111 1133445555443 233
Q ss_pred CchHHHHHHHcCCeEEee-CCCC-cccc
Q 010098 314 VCTATAEALAMGKIVVCA-NHPS-NDFF 339 (518)
Q Consensus 314 ~~~~~lEAma~G~PVV~t-~~g~-~e~i 339 (518)
-.++.||.-.|+|||+- |..+ ++.+
T Consensus 128 -~~ai~EA~~l~IPvIalvDTn~~p~~V 154 (208)
T 1vi6_A 128 -KQAVSEATAVGIPVVALCDSNNSSADV 154 (208)
T ss_dssp -HHHHHHHHHTTCCEEEEECTTCCCTTC
T ss_pred -hhHHHHHHHhCCCEEEEeCCCCCcccc
Confidence 46899999999999998 5544 4443
No 169
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=43.96 E-value=1.1e+02 Score=23.64 Aligned_cols=106 Identities=6% Similarity=-0.095 Sum_probs=60.3
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHH---cCCeEEee-C
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA---MGKIVVCA-N 332 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma---~G~PVV~t-~ 332 (518)
.++.++.+.+. ...+.......|..+.......+..+.+. ..|+++.-. ..+.-|..+++.+. ...|||.. .
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTA 83 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 45666665433 34555666666665443332222223333 357665432 33445666776664 35676654 3
Q ss_pred CCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhCCC
Q 010098 333 HPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEP 366 (518)
Q Consensus 333 ~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~~ 366 (518)
.+. .+.+..|..+++.. +.+++...+..++....
T Consensus 84 ~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 123 (136)
T 1mvo_A 84 KDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 123 (136)
T ss_dssp TTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhhc
Confidence 332 34556778888864 89999999998876543
No 170
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=43.92 E-value=51 Score=25.67 Aligned_cols=60 Identities=13% Similarity=0.086 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCeEEEeC-CCCChHHHHhhcCeeEecCCCCCCchHHHHHHHc--CCeEEeeCC
Q 010098 273 DQIQRAAKKLKLVVRVYP-GRDHADPIFHDYKVFLNPSTTDVVCTATAEALAM--GKIVVCANH 333 (518)
Q Consensus 273 ~~l~~~~~~~~l~v~~~~-~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~--G~PVV~t~~ 333 (518)
..+++.+++.|+++.+.. +..+..+.+..+|++++.... .|-..=++..+- |+||..-+.
T Consensus 24 ~km~~~a~~~gi~v~i~a~~~~~~~~~~~~~DvvLLgPQV-~y~~~~ik~~~~~~~ipV~vI~~ 86 (108)
T 3nbm_A 24 NAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQV-RSYYREMKVDAERLGIQIVATRG 86 (108)
T ss_dssp HHHHHHHHHHTCSEEEEEEETTSCTTTGGGCSEEEECGGG-GGGHHHHHHHHTTTTCEEEECCH
T ss_pred HHHHHHHHHCCCceEEEEcchHHHHhhccCCCEEEEChHH-HHHHHHHHHHhhhcCCcEEEeCH
Confidence 677888888899887754 555677778899977764321 123344555554 899988754
No 171
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=43.90 E-value=82 Score=24.43 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCCeEEE--eCC---CCCh-HHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCCccccccCCcEE
Q 010098 273 DQIQRAAKKLKLVVRV--YPG---RDHA-DPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCR 346 (518)
Q Consensus 273 ~~l~~~~~~~~l~v~~--~~~---~~~~-~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~ 346 (518)
+.|++.++++|.++.+ .|. .+.. ++-+..+|+.|+.+-.+.-. . .-..|+||+-+... +.+
T Consensus 23 eaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~~AD~VIia~d~~v~~---~-~RF~gk~v~~~~v~--~~i------- 89 (106)
T 2m1z_A 23 QALKKGAKKMGNLIKVETQGATGIENELTEKDVNIGEVVIFAVDTKVRN---K-ERFDGKVVLEVPVS--API------- 89 (106)
T ss_dssp HHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHHHCSEEEEEESSCCST---H-HHHTTSEEEEECTT--HHH-------
T ss_pred HHHHHHHHHCCCEEEEEEecCccccCCCCHHHHhhCCEEEEeccccccc---h-hccCCCcEEEEcHH--HHH-------
Confidence 7889999999988765 332 2233 37789999888876543211 2 22349999988762 122
Q ss_pred eeCCHHHHHHHHHHHHh
Q 010098 347 TYDGRNGFVEATLKALA 363 (518)
Q Consensus 347 ~~~d~~~l~~~i~~ll~ 363 (518)
.|++++.+.+.++++
T Consensus 90 --~~~~~~l~~a~~~~~ 104 (106)
T 2m1z_A 90 --KDAEKVINAALALID 104 (106)
T ss_dssp --HCHHHHHHHHHHHHT
T ss_pred --HCHHHHHHHHHHHHh
Confidence 478888777777664
No 172
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=43.75 E-value=42 Score=31.79 Aligned_cols=79 Identities=15% Similarity=0.143 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecCCCCCCchHHHHHHH
Q 010098 246 ELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALA 323 (518)
Q Consensus 246 ~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma 323 (518)
.+++++. ..++++++-+-+ .+.+..++.+++++... .+.+.++++. ..|+.+..+....-.-.+.+|+.
T Consensus 19 ~~~~~l~----~~~~~~~~av~d-~~~~~~~~~a~~~~~~~----~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~ 89 (329)
T 3evn_A 19 RFIEGVR----LAGNGEVVAVSS-RTLESAQAFANKYHLPK----AYDKLEDMLADESIDVIYVATINQDHYKVAKAALL 89 (329)
T ss_dssp HHHHHHH----HHCSEEEEEEEC-SCSSTTCC---CCCCSC----EESCHHHHHTCTTCCEEEECSCGGGHHHHHHHHHH
T ss_pred HHHHHHH----hCCCcEEEEEEc-CCHHHHHHHHHHcCCCc----ccCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHH
Confidence 3455553 235777775554 33344455555555421 2467888998 67877766554444455788999
Q ss_pred cCCeEEeeCC
Q 010098 324 MGKIVVCANH 333 (518)
Q Consensus 324 ~G~PVV~t~~ 333 (518)
.|++|++-..
T Consensus 90 aGk~Vl~EKP 99 (329)
T 3evn_A 90 AGKHVLVEKP 99 (329)
T ss_dssp TTCEEEEESS
T ss_pred CCCeEEEccC
Confidence 9999998654
No 173
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=43.70 E-value=1.1e+02 Score=29.93 Aligned_cols=83 Identities=18% Similarity=0.106 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhcC----CcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhh--cCeeEecCCCCCCchHHH
Q 010098 246 ELLGLLNIYHKELA----GLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPSTTDVVCTATA 319 (518)
Q Consensus 246 ~ll~a~~~l~~~~~----~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~--adv~v~pS~~E~~~~~~l 319 (518)
..++++.++....+ +++++-+-+ .+.+..++.+++++..-. +.+.+++++. .|+.+..+....-.-.+.
T Consensus 40 ~h~~~~~~~~~~~~~~~~~~elvav~d-~~~~~a~~~a~~~~~~~~----y~d~~~ll~~~~vD~V~I~tp~~~H~~~~~ 114 (412)
T 4gqa_A 40 AHADAYRRAAMFYPDLPKRPHLYALAD-QDQAMAERHAAKLGAEKA----YGDWRELVNDPQVDVVDITSPNHLHYTMAM 114 (412)
T ss_dssp HHHHHHHHHHHHCTTSSSEEEEEEEEC-SSHHHHHHHHHHHTCSEE----ESSHHHHHHCTTCCEEEECSCGGGHHHHHH
T ss_pred HHHHHHHhccccccccCCCeEEEEEEc-CCHHHHHHHHHHcCCCeE----ECCHHHHhcCCCCCEEEECCCcHHHHHHHH
Confidence 35666665544332 456665554 567788888888886422 3678888874 566665554444445688
Q ss_pred HHHHcCCeEEeeCC
Q 010098 320 EALAMGKIVVCANH 333 (518)
Q Consensus 320 EAma~G~PVV~t~~ 333 (518)
+|+.+|++|+|-.-
T Consensus 115 ~al~aGkhVl~EKP 128 (412)
T 4gqa_A 115 AAIAAGKHVYCEKP 128 (412)
T ss_dssp HHHHTTCEEEEESC
T ss_pred HHHHcCCCeEeecC
Confidence 99999999998755
No 174
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=43.68 E-value=1.6e+02 Score=25.44 Aligned_cols=95 Identities=16% Similarity=0.158 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEe--CCCCChHHHHh-----hcCeeEecCCCCCCch
Q 010098 244 YEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVY--PGRDHADPIFH-----DYKVFLNPSTTDVVCT 316 (518)
Q Consensus 244 ~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~--~~~~~~~~l~~-----~adv~v~pS~~E~~~~ 316 (518)
...+++++.+.++.. -++-++|.+.....++.+.+-+++++..+ ...++.++.+. .++++|-+ ++
T Consensus 80 ~~Dil~al~~a~~~~--~kIavvg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG~------~~ 151 (196)
T 2q5c_A 80 RFDTMRAVYNAKRFG--NELALIAYKHSIVDKHEIEAMLGVKIKEFLFSSEDEITTLISKVKTENIKIVVSG------KT 151 (196)
T ss_dssp HHHHHHHHHHHGGGC--SEEEEEEESSCSSCHHHHHHHHTCEEEEEEECSGGGHHHHHHHHHHTTCCEEEEC------HH
T ss_pred HhHHHHHHHHHHhhC--CcEEEEeCcchhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHHCCCeEEECC------HH
Confidence 345677777766543 37777777655555666666667765543 33444443333 23455522 33
Q ss_pred HHHHHHHcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHH
Q 010098 317 ATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKAL 362 (518)
Q Consensus 317 ~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll 362 (518)
+.--|--+|+|.+--. .+.+++.+++.+++
T Consensus 152 ~~~~A~~~Gl~~vli~----------------sg~eSI~~Ai~eA~ 181 (196)
T 2q5c_A 152 VTDEAIKQGLYGETIN----------------SGEESLRRAIEEAL 181 (196)
T ss_dssp HHHHHHHTTCEEEECC----------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEEe----------------cCHHHHHHHHHHHH
Confidence 4444555665544332 25666766666654
No 175
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=43.61 E-value=83 Score=29.72 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=48.0
Q ss_pred CcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 260 GLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 260 ~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
+++++-+.+ .+.+..++.+++++... .+.+.++++. ..|+.+..+....-.-.+.+|+..|++|++-..
T Consensus 28 ~~~l~av~d-~~~~~a~~~a~~~~~~~----~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~~GkhVl~EKP 98 (334)
T 3ohs_X 28 EHQVVAVAA-RDLSRAKEFAQKHDIPK----AYGSYEELAKDPNVEVAYVGTQHPQHKAAVMLCLAAGKAVLCEKP 98 (334)
T ss_dssp TEEEEEEEC-SSHHHHHHHHHHHTCSC----EESSHHHHHHCTTCCEEEECCCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred CeEEEEEEc-CCHHHHHHHHHHcCCCc----ccCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEECC
Confidence 356666654 45677788888887631 2467888888 578777665444434457789999999998754
No 176
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=43.52 E-value=1.2e+02 Score=26.60 Aligned_cols=105 Identities=8% Similarity=-0.036 Sum_probs=64.8
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHHc--CCeEEee-CC
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM--GKIVVCA-NH 333 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~--G~PVV~t-~~ 333 (518)
.+++|+.+.+. .+.+....+..|..+.......+..+.+. ..|+++.-. ..+.-|..+++.+.. ++|||.- ..
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt~~ 85 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLTAK 85 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEEET
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEeCC
Confidence 46777776443 35566666666766554444444444444 357665543 334456777777653 6777654 33
Q ss_pred CC----ccccccCCcEEeeC--CHHHHHHHHHHHHhCC
Q 010098 334 PS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEE 365 (518)
Q Consensus 334 g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~ 365 (518)
.. .+.+..|..+++.. +++++..+|..++...
T Consensus 86 ~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (238)
T 2gwr_A 86 TDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRN 123 (238)
T ss_dssp TCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCC
T ss_pred CCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 22 45566788888863 9999999999987653
No 177
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=43.42 E-value=29 Score=31.56 Aligned_cols=43 Identities=26% Similarity=0.129 Sum_probs=25.8
Q ss_pred CCccccEEEEEeeccCCcc--cc--cccchHHHH---HHHHhcCCeeEEEEec
Q 010098 1 MDRKQQHIAIFTTASLPWL--TG--TAVNPLFRA---AYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~rI~ivt~~~~P~~--~G--~~~~~~~~a---~~L~~~gg~~V~vi~~ 46 (518)
|.++ ||+||.++..-+. +| ++....+.+ ..|.+.| ++|+++++
T Consensus 1 m~m~--kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG-~~V~iaS~ 50 (244)
T 3kkl_A 1 MTPK--RALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHG-FEVDFVSE 50 (244)
T ss_dssp --CC--EEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTT-CEEEEEES
T ss_pred CCCC--EEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCC-CEEEEEeC
Confidence 6654 8999988642111 11 233444444 6777777 99999998
No 178
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=43.10 E-value=23 Score=32.99 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=33.9
Q ss_pred CCccccEEEEEeec-------cCCcccccccchHHHHHHHHhcCCeeEEEEe
Q 010098 1 MDRKQQHIAIFTTA-------SLPWLTGTAVNPLFRAAYLAKDGERRVTLVI 45 (518)
Q Consensus 1 M~~~~~rI~ivt~~-------~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~ 45 (518)
|+.+++++|+|.+. .++...|+..-...+.+.|.+.| ++|++..
T Consensus 16 m~~~~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LG-F~V~~~~ 66 (278)
T 3od5_A 16 MDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLG-FEVKCFN 66 (278)
T ss_dssp CCSSBCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CCCCCcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEEec
Confidence 77777888877744 24567787777788889999998 9999874
No 179
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=42.69 E-value=1.1e+02 Score=23.16 Aligned_cols=103 Identities=6% Similarity=-0.100 Sum_probs=58.0
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHH--cCCeEEee-CC
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA--MGKIVVCA-NH 333 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma--~G~PVV~t-~~ 333 (518)
.++.++.+.+. .+.++...+..|..+.......+..+.+. ..|+.+.-. ..+.-|..+++.+. ...|+|.. ..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~ 83 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGR 83 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEESC
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEECC
Confidence 35666665332 34555666655655443332222223333 346665432 23334566666553 46777654 33
Q ss_pred CC----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 334 PS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 334 g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
.. .+.+..|..+++.. +.+++...+..++.
T Consensus 84 ~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 119 (123)
T 1xhf_A 84 DNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 (123)
T ss_dssp CSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHH
Confidence 33 34556788888864 89999999988764
No 180
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=42.34 E-value=95 Score=23.90 Aligned_cols=90 Identities=12% Similarity=0.193 Sum_probs=55.1
Q ss_pred EEEEeCCCC----hHHHHHHHHHcCCeEEE-eCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHH--cCCeEEeeCCCC
Q 010098 263 MDLYGNGED----FDQIQRAAKKLKLVVRV-YPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALA--MGKIVVCANHPS 335 (518)
Q Consensus 263 l~ivG~g~~----~~~l~~~~~~~~l~v~~-~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma--~G~PVV~t~~g~ 335 (518)
++++|.|-- .+.+++.+++.|+++.+ ..+..+..+.+..+|+++........ ..-++..+ .++||+.-+.-.
T Consensus 8 lvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~~~~~~D~Ii~t~~l~~~-~~~~~~~~~~~~~pv~~I~~~~ 86 (109)
T 2l2q_A 8 LLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSEVVDRFDVVLLAPQSRFN-KKRLEEITKPKGIPIEIINTID 86 (109)
T ss_dssp EEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHHHTTTCSEEEECSCCSSH-HHHHHHHHHHHTCCEEECCHHH
T ss_pred EEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhcCCCCEEEECCccHHH-HHHHHHHhcccCCCEEEEChHH
Confidence 344455433 36778888888887655 33677787778899988876543221 33344433 589997754310
Q ss_pred ccccccCCcEEeeCCHHHHHHHHHHHHh
Q 010098 336 NDFFKQFPNCRTYDGRNGFVEATLKALA 363 (518)
Q Consensus 336 ~e~i~~~~~g~~~~d~~~l~~~i~~ll~ 363 (518)
+ | .-|.+++.+.+.++++
T Consensus 87 --y------~--~~d~~~vl~~i~~~l~ 104 (109)
T 2l2q_A 87 --Y------G--TMNGEKVLQLAINAFN 104 (109)
T ss_dssp --H------H--HTCHHHHHHHHHHHHH
T ss_pred --h------c--cCCHHHHHHHHHHHHh
Confidence 0 0 1267777777777665
No 181
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=42.28 E-value=1.3e+02 Score=23.92 Aligned_cols=104 Identities=9% Similarity=-0.013 Sum_probs=59.6
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCCe--EEEeCCCCChHHHHh---------hcCeeEecC-CCCCCchHHHHHHHc--
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKLV--VRVYPGRDHADPIFH---------DYKVFLNPS-TTDVVCTATAEALAM-- 324 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l~--v~~~~~~~~~~~l~~---------~adv~v~pS-~~E~~~~~~lEAma~-- 324 (518)
..+++++.+.+. .+.++...+..+.. +.......+..+.+. ..|+.+.-- ..+.-|..+++.+..
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~~ 87 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNP 87 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhCc
Confidence 456777776433 35556666655542 222322223334443 357666533 233457777777753
Q ss_pred ---CCeEEee-CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 325 ---GKIVVCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 325 ---G~PVV~t-~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
.+|||.. .... .+.+..|..+++.. +.+++.++|..++.
T Consensus 88 ~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 88 DLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp TTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 4676554 3332 44556788888864 88999988888653
No 182
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=42.26 E-value=2.5e+02 Score=28.30 Aligned_cols=90 Identities=13% Similarity=0.034 Sum_probs=56.9
Q ss_pred cCCHHHHHHHHHH-HHHh--------cCCcEEEEEeC---CCChHHHHHHHHHcCCeEE-EeCCCCChHHHHh--hcCee
Q 010098 241 SKGYEELLGLLNI-YHKE--------LAGLEMDLYGN---GEDFDQIQRAAKKLKLVVR-VYPGRDHADPIFH--DYKVF 305 (518)
Q Consensus 241 ~Kg~~~ll~a~~~-l~~~--------~~~~~l~ivG~---g~~~~~l~~~~~~~~l~v~-~~~~~~~~~~l~~--~adv~ 305 (518)
..|.+..++++-+ +... ...-.+.|+|. ..+..+++.+.++.|+++. ++.+-...+++-+ .|++-
T Consensus 192 ~~G~~~a~~al~~~l~~~~~~~~~~~~~~~~VNIiG~~~~~gD~~eik~lL~~~Gi~v~~~~~g~~t~~ei~~~~~A~~n 271 (492)
T 3u7q_A 192 SLGHHIANDAVRDWVLGKRDEDTTFASTPYDVAIIGDYNIGGDAWSSRILLEEMGLRCVAQWSGDGSISEIELTPKVKLN 271 (492)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTCCCCCCCTTEEEEEEECCBTTTTHHHHHHHHHTTCEEEEEEETTCCHHHHHHGGGCSEE
T ss_pred hHHHHHHHHHHHHHHhhhcccccccCCCCCcEEEECCCCChhhHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhhhcCcEE
Confidence 3467777777755 3322 12357788885 2346889999999999976 4555555665544 55554
Q ss_pred EecCCCCCCchHHHHHH--HcCCeEEeeC
Q 010098 306 LNPSTTDVVCTATAEAL--AMGKIVVCAN 332 (518)
Q Consensus 306 v~pS~~E~~~~~~lEAm--a~G~PVV~t~ 332 (518)
+..+ ..++..+.+.| -+|+|.+...
T Consensus 272 iv~~--~~~~~~~A~~Le~~~GiP~i~~~ 298 (492)
T 3u7q_A 272 LVHC--YRSMNYISRHMEEKYGIPWMEYN 298 (492)
T ss_dssp EESC--HHHHHHHHHHHHHHHCCCEEECC
T ss_pred EEEC--hHHHHHHHHHHHHHhCCceEecC
Confidence 4332 12356777777 4799999764
No 183
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=42.10 E-value=25 Score=32.63 Aligned_cols=45 Identities=9% Similarity=-0.011 Sum_probs=34.7
Q ss_pred CCccccEEEEEeecc--------------CCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQQHIAIFTTAS--------------LPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~rI~ivt~~~--------------~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|+.+++.+|+|.+.. ++...|+..-...+.+.|.+.| ++|++..-
T Consensus 12 m~~~~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LG-F~V~~~~d 70 (271)
T 3h11_B 12 MKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELH-FEIKPHDD 70 (271)
T ss_dssp CCSSSCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTT-CEEEEEES
T ss_pred CCCCCCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCC-CEEEEEeC
Confidence 777778888888652 4556787777788889999998 99988743
No 184
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=41.99 E-value=14 Score=31.94 Aligned_cols=64 Identities=22% Similarity=0.123 Sum_probs=41.5
Q ss_pred HHhhcCeeE-ecCCCCCCch--HHHHHHHcCCeEEeeCCCC--ccccccC--CcEEeeCCHHHHHHHHHHHHhC
Q 010098 298 IFHDYKVFL-NPSTTDVVCT--ATAEALAMGKIVVCANHPS--NDFFKQF--PNCRTYDGRNGFVEATLKALAE 364 (518)
Q Consensus 298 l~~~adv~v-~pS~~E~~~~--~~lEAma~G~PVV~t~~g~--~e~i~~~--~~g~~~~d~~~l~~~i~~ll~~ 364 (518)
+...+|.|| +|. ++|+ .+.||+..++||++-+.-+ ..++.+. ..-.+.+|++++.+.+.+.+..
T Consensus 104 m~~~sda~IvlpG---g~GTL~E~~~al~~~kpV~~l~~~~~~~gfi~~~~~~~i~~~~~~~e~~~~l~~~~~~ 174 (176)
T 2iz6_A 104 NALSSNVLVAVGM---GPGTAAEVALALKAKKPVVLLGTQPEAEKFFTSLDAGLVHVAADVAGAIAAVKQLLAK 174 (176)
T ss_dssp CGGGCSEEEEESC---CHHHHHHHHHHHHTTCCEEEESCCHHHHHHHHHHCTTTEEEESSHHHHHHHHHHHHHC
T ss_pred HHHhCCEEEEecC---CccHHHHHHHHHHhCCcEEEEcCcccccccCChhhcCeEEEcCCHHHHHHHHHHHHHh
Confidence 344667554 443 3443 3788899999999997632 3333222 2333458999999999988754
No 185
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=41.75 E-value=26 Score=28.05 Aligned_cols=38 Identities=13% Similarity=0.044 Sum_probs=27.7
Q ss_pred ccccEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 3 RKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 3 ~~~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
+++++|++|..+--|..-| ....++|.+.| ++|+-+-|
T Consensus 2 ~~p~siAVVGaS~~~~~~g-----~~v~~~L~~~g-~~V~pVnP 39 (122)
T 3ff4_A 2 NAMKKTLILGATPETNRYA-----YLAAERLKSHG-HEFIPVGR 39 (122)
T ss_dssp CCCCCEEEETCCSCTTSHH-----HHHHHHHHHHT-CCEEEESS
T ss_pred CCCCEEEEEccCCCCCCHH-----HHHHHHHHHCC-CeEEEECC
Confidence 4568999998776554433 45568888887 89888866
No 186
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=41.25 E-value=34 Score=30.11 Aligned_cols=40 Identities=23% Similarity=0.214 Sum_probs=30.2
Q ss_pred CCccccEEEEEeeccCCccccccc-chHHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQQHIAIFTTASLPWLTGTAV-NPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~rI~ivt~~~~P~~~G~~~-~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|..+++||++-.+.. +.+. ....+.+.|.+.| ++|.++.+
T Consensus 3 m~l~~k~I~lgiTGs-----~aa~~k~~~ll~~L~~~g-~eV~vv~T 43 (201)
T 3lqk_A 3 MNFAGKHVGFGLTGS-----HCTYHEVLPQMERLVELG-AKVTPFVT 43 (201)
T ss_dssp CCCTTCEEEEECCSC-----GGGGGGTHHHHHHHHHTT-CEEEEECS
T ss_pred CCcCCCEEEEEEECh-----HHHHHHHHHHHHHHhhCC-CEEEEEEC
Confidence 655667888877643 2244 5788889999998 99999987
No 187
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=40.89 E-value=27 Score=31.92 Aligned_cols=44 Identities=16% Similarity=0.055 Sum_probs=33.8
Q ss_pred CCccccEEEEEeec--c-----CCcccccccchHHHHHHHHhcCCeeEEEEe
Q 010098 1 MDRKQQHIAIFTTA--S-----LPWLTGTAVNPLFRAAYLAKDGERRVTLVI 45 (518)
Q Consensus 1 M~~~~~rI~ivt~~--~-----~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~ 45 (518)
|+.+++++|+|.+. | ++...|+..-...+.+.|.+.| ++|++..
T Consensus 11 m~~~~rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~Lg-F~V~~~~ 61 (250)
T 2j32_A 11 MDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLK-YEVRNKN 61 (250)
T ss_dssp CCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CCCCCccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCC-CEEEEEe
Confidence 67777888888754 3 3566787777788889999998 9998874
No 188
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=40.70 E-value=88 Score=30.74 Aligned_cols=74 Identities=14% Similarity=0.043 Sum_probs=50.4
Q ss_pred hcCCcEEEE-EeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhh-------cCeeEecCCCCCCchHHHHHHHcCCeE
Q 010098 257 ELAGLEMDL-YGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD-------YKVFLNPSTTDVVCTATAEALAMGKIV 328 (518)
Q Consensus 257 ~~~~~~l~i-vG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~-------adv~v~pS~~E~~~~~~lEAma~G~PV 328 (518)
..++++++- +- ..+.+..++.++++++.. ...+.+.++++.. .|+.+..+....-.-.+.+|+..|++|
T Consensus 61 ~~~~~~lva~v~-d~~~~~a~~~a~~~g~~~--~~~~~~~~~ll~~~~~~~~~vD~V~I~tp~~~H~~~~~~al~aGkhV 137 (417)
T 3v5n_A 61 LDDHYELVAGAL-SSTPEKAEASGRELGLDP--SRVYSDFKEMAIREAKLKNGIEAVAIVTPNHVHYAAAKEFLKRGIHV 137 (417)
T ss_dssp HTSCEEEEEEEC-CSSHHHHHHHHHHHTCCG--GGBCSCHHHHHHHHHHCTTCCSEEEECSCTTSHHHHHHHHHTTTCEE
T ss_pred hCCCcEEEEEEe-CCCHHHHHHHHHHcCCCc--ccccCCHHHHHhcccccCCCCcEEEECCCcHHHHHHHHHHHhCCCeE
Confidence 345677663 33 356777788888887631 0135688888887 787776665555455678899999999
Q ss_pred EeeCC
Q 010098 329 VCANH 333 (518)
Q Consensus 329 V~t~~ 333 (518)
+|-.-
T Consensus 138 l~EKP 142 (417)
T 3v5n_A 138 ICDKP 142 (417)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 98654
No 189
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=40.64 E-value=1.1e+02 Score=27.76 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=44.2
Q ss_pred EEEEEeC-CCChHHHHHHHHHc-CCeEE-EeCCCCChHHHHh-hcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCC
Q 010098 262 EMDLYGN-GEDFDQIQRAAKKL-KLVVR-VYPGRDHADPIFH-DYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP 334 (518)
Q Consensus 262 ~l~ivG~-g~~~~~l~~~~~~~-~l~v~-~~~~~~~~~~l~~-~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g 334 (518)
++.++|. |..-..+.+.+... +.++. .....++.++++. .+|+.|--|..+..--.+..++..|+|+|+...|
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~~~~DvvIDfT~p~a~~~~~~~a~~~g~~~VigTTG 78 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTG 78 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHHTTCCEEEECSCTTTHHHHHHHHHHTTCEEEECCCC
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhccCCcEEEEccChHHHHHHHHHHHHcCCCEEEcCCC
Confidence 5677774 65544454444433 55443 2333356666665 7899995555555444455678999999886553
No 190
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=40.38 E-value=24 Score=27.46 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=28.9
Q ss_pred cEEEEEeeccCCcccccccchHHHHHHHHhc-CCe-eEEEEec
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKD-GER-RVTLVIP 46 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~-gg~-~V~vi~~ 46 (518)
+|++|+.+.. |+....+...+.++..+.+. | | +|.|+..
T Consensus 2 ~k~~ii~~~~-p~~~~~~~~al~~a~~~~~~~g-~~~v~vff~ 42 (117)
T 1jx7_A 2 QKIVIVANGA-PYGSESLFNSLRLAIALREQES-NLDLRLFLM 42 (117)
T ss_dssp CEEEEEECCC-TTTCSHHHHHHHHHHHHHHHCT-TCEEEEEEC
T ss_pred cEEEEEEcCC-CCCcHHHHHHHHHHHHHHhcCC-CccEEEEEE
Confidence 3788887765 66555456667888888888 8 8 9999866
No 191
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=40.13 E-value=31 Score=31.99 Aligned_cols=45 Identities=9% Similarity=-0.077 Sum_probs=34.2
Q ss_pred CCccccEEEEEeecc-------CCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQQHIAIFTTAS-------LPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~rI~ivt~~~-------~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|+.+++.+|+|.+.. ++...|+..-...+.+.|.+.| ++|++..-
T Consensus 16 m~~~~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~Lg-F~V~~~~d 67 (277)
T 1nw9_B 16 LSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLH-FMVEVKGD 67 (277)
T ss_dssp CCCSSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTT-EEEEEEES
T ss_pred CCCCcccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCC-CEEEEEcC
Confidence 777778888887443 3556787777788888899898 99998743
No 192
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=40.13 E-value=23 Score=31.03 Aligned_cols=306 Identities=17% Similarity=0.159 Sum_probs=146.8
Q ss_pred cEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcccCCCC
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTS 85 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (518)
|||+|+-.-.+ ..+|+....++.-.++.+.| |+||++..-. + .|... ..+-..
T Consensus 2 mricifmargl-egcgvtkfsleqrdwfikng-hevtlvyakd-----k-------sftrt-------------sshdhk 54 (401)
T 1xv5_A 2 MRICIFMARGL-EGCGVTKFSLEQRDWFIKNG-HEVTLVYAKD-----K-------SFTRT-------------SSHDHK 54 (401)
T ss_dssp CEEEEEETTCC-CSSHHHHHHHHHHHHHHHTT-CEEEEEEECS-----S-------CCTTT-------------TSSSCT
T ss_pred ceEEEEeeccc-cccCceeeehhhhhhhhcCC-cEEEEEEecc-----c-------ccccc-------------ccccCc
Confidence 79999987653 45676666677778999998 9999996611 1 11110 111112
Q ss_pred CCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhh----hchHHHHhhcC---CEEEEEeCChhhhhh
Q 010098 86 TFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWF----HHGKRWKAKFR---FVVGIVHTNYLEYVK 158 (518)
Q Consensus 86 ~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~----~~~~~~~~~~~---~~v~~~h~~~~~~~~ 158 (518)
.+.++....+ -.....+++. +-|++++.+......- ..-..+....+ .++..-|+...-..+
T Consensus 55 sfsipvilak---------eydkalklvn--dcdiliinsvpatsvqeatinnykklldnikpsirvvvyqhdhsvlslr 123 (401)
T 1xv5_A 55 SFSIPVILAK---------EYDKALKLVN--DCDILIINSVPATSVQEATINNYKKLLDNIKPSIRVVVYQHDHSVLSLR 123 (401)
T ss_dssp TTCEEECTTT---------CHHHHHHHHT--SCSEEEEEECCBTTSCHHHHHHHHHHHHHSCTTSEEEEEECCCSHHHHT
T ss_pred cccceeEehh---------hhHHHhhhhc--cCcEEEEccCccchhHHHHHhhHHHHHhcCCCceEEEEEeccchhhhhh
Confidence 2333321110 0111233333 3788877764433111 00122333434 366666755332222
Q ss_pred hhcchHHHHHHHHHHHHHHhhhhccEEEEeChhh-------hc-cCCCceecccccCC-----CCcCcchhhHHHhhcCC
Q 010098 159 REKNDRLQAFLLEFVNSWLARVHCHKVIRLSAAT-------QE-YPNSIVCNVHGVNP-----KFLEIGEKKMEQQQNGN 225 (518)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~-------~~-~~~~~~~~~~GVd~-----~~~~~~~~~~~~~~~~~ 225 (518)
+ ..+. ..-.++ ||.++..|..- ++ +++ .+.....+.. ++-+|-.--..+...-.
T Consensus 124 r-nlgl---------eetvrr--advifshsdngdfnkvlmkewype-tvslfddieeaptvynfqppmdivkvrstywk 190 (401)
T 1xv5_A 124 R-NLGL---------EETVRR--ADVIFSHSDNGDFNKVLMKEWYPE-TVSLFDDIEEAPTVYNFQPPMDIVKVRSTYWK 190 (401)
T ss_dssp T-BSSH---------HHHHHH--CSEEEESCTTSHHHHTHHHHHSCS-SCCSSSCCCCCCCEEECCCCBCHHHHHHHHCC
T ss_pred h-hcCh---------HHhhhh--hceEEecCCCCcHHHHHHHhhccc-hhhhhcchhhCCceeccCCCceeeeeehhhhc
Confidence 2 1221 233344 59999888431 22 232 1111111111 22222221111211111
Q ss_pred CC---cccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCC--------
Q 010098 226 KA---FTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDH-------- 294 (518)
Q Consensus 226 ~~---~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~-------- 294 (518)
+- .-.+=-|+||-..+||+-.+.+--+++.+.. .-.-++-|- +....+ -.+++.|+...++|.++-
T Consensus 191 dvseinmninrwigrtttwkgfyqmfdfhekflkpa-gkstvmegl-erspaf-iaikekgipyeyygnreidkmnlapn 267 (401)
T 1xv5_A 191 DVSEINMNINRWIGRTTTWKGFYQMFDFHEKFLKPA-GKSTVMEGL-ERSPAF-IAIKEKGIPYEYYGNREIDKMNLAPN 267 (401)
T ss_dssp CGGGCEEEEEEEECCSCGGGCHHHHHHHHHHTTTTT-TCEEEEECC-CCSHHH-HHHHHTTCCEEEECGGGGGGCCCSSS
T ss_pred cHHHhhcchhhhhcccchhHhHHHHhhHHHHhcCcc-chhhhhhhh-hcCCce-EEEcccCCchhhcCcchhhhhcCCCC
Confidence 10 0122349999999999999888776664322 223334443 222222 234666877777663210
Q ss_pred -----------hH--HHHhhcCeeEecC------CCCCCchHHHHHHHcCCeEEeeCCCC--------ccccccCCcEEe
Q 010098 295 -----------AD--PIFHDYKVFLNPS------TTDVVCTATAEALAMGKIVVCANHPS--------NDFFKQFPNCRT 347 (518)
Q Consensus 295 -----------~~--~l~~~adv~v~pS------~~E~~~~~~lEAma~G~PVV~t~~g~--------~e~i~~~~~g~~ 347 (518)
.+ +-+..+-.....| ..-..-.+-+|--|||.-.|--...| ..-+.....|.+
T Consensus 268 qpaqildcyinsemlermsksgfgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntpltshdsgii 347 (401)
T 1xv5_A 268 QPAQILDCYINSEMLERMSKSGFGYQLSKLNQKYLQRSLEYTHLELGACGTIPVFWKSTGENLKFRVDNTPLTSHDSGII 347 (401)
T ss_dssp CCEEEESCCCHHHHHHHHHTEEEEEECCCCCGGGCSSCCCHHHHHHHHHTSEEEEEHHHHHHSBCTTTCCBGGGSCCSCE
T ss_pred CcchhhhheecHHHHHHhhhcCcccchHHHHHHHHHhhhhhheeecccccceeeeecccCcceEEEecCCcccccCCceE
Confidence 00 2222222222222 12345678899999997655443222 122223334444
Q ss_pred -e--CCHHHHHHHHHHHHhCC
Q 010098 348 -Y--DGRNGFVEATLKALAEE 365 (518)
Q Consensus 348 -~--~d~~~l~~~i~~ll~~~ 365 (518)
+ +|.++--+.|.++-+|.
T Consensus 348 wfdendmestferikelssdr 368 (401)
T 1xv5_A 348 WFDENDMESTFERIKELSSDR 368 (401)
T ss_dssp EECTTCHHHHHHHHHHHHTCH
T ss_pred EecCCchHHHHHHHHHhccch
Confidence 3 37888888888876653
No 193
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=39.63 E-value=1.1e+02 Score=29.77 Aligned_cols=72 Identities=14% Similarity=0.014 Sum_probs=48.5
Q ss_pred cCCcEEEE-EeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhh-------cCeeEecCCCCCCchHHHHHHHcCCeEE
Q 010098 258 LAGLEMDL-YGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD-------YKVFLNPSTTDVVCTATAEALAMGKIVV 329 (518)
Q Consensus 258 ~~~~~l~i-vG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~-------adv~v~pS~~E~~~~~~lEAma~G~PVV 329 (518)
.++++++- +- ..+.+..++.++++++.. -..+.+.++++.. .|+.+..+....-.-.+.+|+..|++|+
T Consensus 37 ~~~~~lva~v~-d~~~~~a~~~a~~~g~~~--~~~~~~~~~ll~~~~~~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl 113 (398)
T 3dty_A 37 DNTFVLVAGAF-DIDPIRGSAFGEQLGVDS--ERCYADYLSMFEQEARRADGIQAVSIATPNGTHYSITKAALEAGLHVV 113 (398)
T ss_dssp GGSEEEEEEEC-CSSHHHHHHHHHHTTCCG--GGBCSSHHHHHHHHTTCTTCCSEEEEESCGGGHHHHHHHHHHTTCEEE
T ss_pred CCCeEEEEEEe-CCCHHHHHHHHHHhCCCc--ceeeCCHHHHHhcccccCCCCCEEEECCCcHHHHHHHHHHHHCCCeEE
Confidence 34566664 32 356777888888888631 0135688888886 7876666544444455789999999999
Q ss_pred eeC
Q 010098 330 CAN 332 (518)
Q Consensus 330 ~t~ 332 (518)
|=.
T Consensus 114 ~EK 116 (398)
T 3dty_A 114 CEK 116 (398)
T ss_dssp ECS
T ss_pred EeC
Confidence 843
No 194
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=39.30 E-value=37 Score=31.44 Aligned_cols=43 Identities=9% Similarity=0.082 Sum_probs=32.6
Q ss_pred CCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCC
Q 010098 292 RDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP 334 (518)
Q Consensus 292 ~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g 334 (518)
.++.++++..+|+.|--+..+..--.+..++..|+|+|+...|
T Consensus 64 ~~dl~~ll~~~DVVIDfT~p~a~~~~~~~al~~G~~vVigTTG 106 (272)
T 4f3y_A 64 TDDIERVCAEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTG 106 (272)
T ss_dssp BCCHHHHHHHCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCC
T ss_pred cCCHHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 4677888999999887665554444567789999999987654
No 195
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=39.25 E-value=25 Score=30.24 Aligned_cols=70 Identities=16% Similarity=0.142 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHH
Q 010098 244 YEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALA 323 (518)
Q Consensus 244 ~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma 323 (518)
...-++.+..+++.+|+.+|.++-+++ .+..+ ....+.+++++.+.+.+.|-..+-.++.+-+.++
T Consensus 82 ~syT~dTl~~l~~~~p~~~~~~iiG~D---~l~~l-----------~~W~~~~~l~~~~~~vv~~r~~~iSST~IR~~i~ 147 (177)
T 3h05_A 82 SVTTYALLEKIQEIYPTADITFVIGPD---NFFKF-----------AKFYKAEEITERWTVMACPEKVKIRSTDIRNALI 147 (177)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEEECHH---HHHTG-----------GGSTTHHHHHHHSEEEECCCSSCCCHHHHHHHHH
T ss_pred CcchHHHHHHHHHHhcCCCeEEEEecc---hhhhc-----------ccchhHHHHHHhCCEEEEcCCCCCcHHHHHHHHH
Confidence 334566777788888988875543322 22221 1234577899999999998767777888889999
Q ss_pred cCCe
Q 010098 324 MGKI 327 (518)
Q Consensus 324 ~G~P 327 (518)
.|.+
T Consensus 148 ~g~~ 151 (177)
T 3h05_A 148 EGKD 151 (177)
T ss_dssp HTCC
T ss_pred cCCC
Confidence 8865
No 196
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=39.13 E-value=29 Score=32.12 Aligned_cols=45 Identities=29% Similarity=0.259 Sum_probs=34.3
Q ss_pred CCccccEEEEEeecc------CCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQQHIAIFTTAS------LPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~rI~ivt~~~------~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|+.+++++|+|.+.. .+...|+..-...+.+.|.+.| ++|++..-
T Consensus 27 m~~~~rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LG-F~V~~~~d 77 (272)
T 1m72_A 27 MNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLG-FKVTVFPN 77 (272)
T ss_dssp CCSSEEEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTT-CEEEEEES
T ss_pred CCCCCCCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCC-CEEEEecC
Confidence 666668888887542 4567887888888889999998 99988743
No 197
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=39.01 E-value=57 Score=27.18 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=37.5
Q ss_pred HHHhhcCeeEecCCCCCCchH---HHHHHHcCCeEEeeCCC-C----ccccccCCc---E--EeeCCHHHHHHHHHHHHh
Q 010098 297 PIFHDYKVFLNPSTTDVVCTA---TAEALAMGKIVVCANHP-S----NDFFKQFPN---C--RTYDGRNGFVEATLKALA 363 (518)
Q Consensus 297 ~l~~~adv~v~pS~~E~~~~~---~lEAma~G~PVV~t~~g-~----~e~i~~~~~---g--~~~~d~~~l~~~i~~ll~ 363 (518)
+.++.||++|.--. +.-+-+ +-=|.+.|+||++--.+ . .-.+....+ - +.+++ +++.+.|.+.++
T Consensus 64 ~~i~~aD~vvA~l~-~~d~Gt~~EiG~A~algkPV~~l~~~~~~~~ls~mi~G~~~~~~~~~~~Y~~-~el~~il~~f~~ 141 (152)
T 4fyk_A 64 NWLQQADVVVAEVT-QPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAE-GEVETMLDRYFE 141 (152)
T ss_dssp HHHHHCSEEEEECS-SCCHHHHHHHHHHHHTTCCEEEEECGGGSCCCCHHHHHHCCSSSEEEEECCT-TCHHHHHHHHHC
T ss_pred HHHHHCCEEEEeCC-CCCCCHHHHHHHHHHcCCeEEEEEeCCccchhHHHHcCCCCCCeEEEEEecH-HHHHHHHHHHHH
Confidence 67889997776432 333333 44478999999994222 1 212222222 2 22456 777777777765
Q ss_pred C
Q 010098 364 E 364 (518)
Q Consensus 364 ~ 364 (518)
+
T Consensus 142 ~ 142 (152)
T 4fyk_A 142 A 142 (152)
T ss_dssp -
T ss_pred h
Confidence 4
No 198
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=38.64 E-value=1.1e+02 Score=23.27 Aligned_cols=104 Identities=6% Similarity=-0.041 Sum_probs=59.1
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCC-eEEEeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHH-----cCCeEEe
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKL-VVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA-----MGKIVVC 330 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l-~v~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma-----~G~PVV~ 330 (518)
.++.++.+.+. .+.+....+..|. .+.......+..+.+. ..|+.+.-. ..+.-|..+++.+. ...|+|.
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 86 (129)
T 1p6q_A 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFII 86 (129)
T ss_dssp CCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCEEE
Confidence 46677766433 3555666665554 2322222222223333 346665432 23445777788774 3567765
Q ss_pred e-CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhC
Q 010098 331 A-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 364 (518)
Q Consensus 331 t-~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~ 364 (518)
. ..+. .+.+..|..+++.. +.+++..+|..++..
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 87 LTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp CCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 4 3333 34556677888863 899999999887753
No 199
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.56 E-value=43 Score=29.44 Aligned_cols=98 Identities=16% Similarity=0.085 Sum_probs=58.4
Q ss_pred cccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-hHHHHHHHHHcCCe---EEEeCCC--CChHHHHhhcCeeEecC-CC
Q 010098 239 VWSKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLV---VRVYPGR--DHADPIFHDYKVFLNPS-TT 311 (518)
Q Consensus 239 ~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l~---v~~~~~~--~~~~~l~~~adv~v~pS-~~ 311 (518)
+-.|=++.|.+|+.-+.... .-++.++|.... ...+++.+++-|.. .+|.|+. ....+-+..=|+.+... ..
T Consensus 44 dL~kT~~~L~~A~~~i~~~~-~~~ilfV~tk~~~~~~V~k~A~~~g~~~v~~rw~gG~lTN~~~~~~~~Pdllvv~Dp~~ 122 (202)
T 3j20_B 44 DVRKTDERLKVAGKFLAKFE-PQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPDVLIVTDPRA 122 (202)
T ss_dssp CHHHHHHHHHHHHHHHHHSC-SSCEEEECCCTTTHHHHHHHHHHHSCCCCCSSCCSSSSSCSSSSSCCCCSEEEESCTTT
T ss_pred CHHHHHHHHHHHHHHHHhhC-CCeEEEEecChHHHHHHHHHHHHHCCceeCceecCCCcccHhHHhccCCCeEEEeCCcc
Confidence 34455667777777666543 467788898665 45566777766543 3455542 11112233446555443 23
Q ss_pred CCCchHHHHHHHcCCeEEee-CCCC-cccc
Q 010098 312 DVVCTATAEALAMGKIVVCA-NHPS-NDFF 339 (518)
Q Consensus 312 E~~~~~~lEAma~G~PVV~t-~~g~-~e~i 339 (518)
| -.++.||.-.|+|+|+- |..+ ++.+
T Consensus 123 d--~~ai~EA~~l~IP~Ial~DTn~~p~~V 150 (202)
T 3j20_B 123 D--HQAMREAVEIGIPIVALVDTENLLSYV 150 (202)
T ss_dssp S--HHHHHHHHHHTCCEEEEECTTCCCTTC
T ss_pred c--hHHHHHHHHcCCCEEEEEcCCCCcccc
Confidence 3 46789999999999986 5544 4443
No 200
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=38.36 E-value=43 Score=33.31 Aligned_cols=74 Identities=11% Similarity=0.111 Sum_probs=49.3
Q ss_pred hcCCcEEEEEeCCCChHHHHHHHHHcCCeE-EEeCCCCChHHHHh--hcCeeEecCCCCCCchHHHHHHHcCCeEEeeC
Q 010098 257 ELAGLEMDLYGNGEDFDQIQRAAKKLKLVV-RVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCAN 332 (518)
Q Consensus 257 ~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v-~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~ 332 (518)
..++++++-+-+ .+.+..++.+++++... .+ ..+.+.++++. ..|+.+..+....-.-.+.+|+..|++|++-.
T Consensus 105 ~~~~~~lvav~d-~~~~~~~~~a~~~g~~~~~~-~~~~~~~~ll~~~~vD~V~iatp~~~h~~~~~~al~aGk~Vl~EK 181 (433)
T 1h6d_A 105 GCQHSRIEALVS-GNAEKAKIVAAEYGVDPRKI-YDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEK 181 (433)
T ss_dssp TCSSEEEEEEEC-SCHHHHHHHHHHTTCCGGGE-ECSSSGGGGGGCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred hCCCcEEEEEEc-CCHHHHHHHHHHhCCCcccc-cccCCHHHHhcCCCCCEEEEcCCchhHHHHHHHHHHCCCcEEEcC
Confidence 345777766554 45666777778777531 00 02456777887 67877776655444556788999999999853
No 201
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=38.36 E-value=75 Score=29.75 Aligned_cols=70 Identities=9% Similarity=0.011 Sum_probs=44.7
Q ss_pred hcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeC
Q 010098 257 ELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCAN 332 (518)
Q Consensus 257 ~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~ 332 (518)
..++++++-+-+ .+.+..++.+++++.. ..++.+++-...|+.+..+....-.-.+.+|+..|++|++-.
T Consensus 27 ~~~~~~lvav~d-~~~~~~~~~~~~~g~~-----~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~al~~G~~v~~eK 96 (319)
T 1tlt_A 27 AASDWTLQGAWS-PTRAKALPICESWRIP-----YADSLSSLAASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDK 96 (319)
T ss_dssp SCSSEEEEEEEC-SSCTTHHHHHHHHTCC-----BCSSHHHHHTTCSEEEECSCTTHHHHHHHHHHHTTCEEEEES
T ss_pred hCCCeEEEEEEC-CCHHHHHHHHHHcCCC-----ccCcHHHhhcCCCEEEEeCCchhHHHHHHHHHHcCCeEEEeC
Confidence 346788774443 2334455666666653 234555554578977776655544556778999999999853
No 202
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=38.18 E-value=1.2e+02 Score=22.62 Aligned_cols=102 Identities=8% Similarity=-0.047 Sum_probs=56.6
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEE-EeCCCCChHHHHh--hcCeeEec-CCCCCCchHHHHHHH---cCCeEEee-
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVR-VYPGRDHADPIFH--DYKVFLNP-STTDVVCTATAEALA---MGKIVVCA- 331 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~-~~~~~~~~~~l~~--~adv~v~p-S~~E~~~~~~lEAma---~G~PVV~t- 331 (518)
.++.++.+.+. ...++...+..|..+. ......+..+.+. ..|+.+.- ...+.-|..+++.+. .+.|+|..
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 82 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCS 82 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEE
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEe
Confidence 35666665333 3455666666666532 2222222223333 35665543 223334666776663 35776654
Q ss_pred CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHH
Q 010098 332 NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKAL 362 (518)
Q Consensus 332 ~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll 362 (518)
.... .+.+..|..+++.. +++++.+.+.+++
T Consensus 83 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 83 AMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp CTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 3333 34556778888864 8999999988764
No 203
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=38.01 E-value=35 Score=29.35 Aligned_cols=45 Identities=22% Similarity=0.223 Sum_probs=33.5
Q ss_pred CCccccEEEEEeec-------cCCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQQHIAIFTTA-------SLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~rI~ivt~~-------~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|+.+++.+|+|.+. .++...|+..-...+.+.|.+.| ++|.+..-
T Consensus 39 m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LG-F~V~~~~d 90 (179)
T 3p45_A 39 MDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLG-FEVKCFND 90 (179)
T ss_dssp CCSSBCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTT-CEEEEEES
T ss_pred CCCCccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEEEeC
Confidence 66666777777643 34667887777888888898888 99998843
No 204
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=37.98 E-value=1.7e+02 Score=26.85 Aligned_cols=59 Identities=17% Similarity=0.087 Sum_probs=33.9
Q ss_pred hcCeeE-ecCCCCCCchHHHHHHHcCCeEEeeCCCCccccccCC-cEEeeCCHHHHHHHHHHHH
Q 010098 301 DYKVFL-NPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFP-NCRTYDGRNGFVEATLKAL 362 (518)
Q Consensus 301 ~adv~v-~pS~~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~-~g~~~~d~~~l~~~i~~ll 362 (518)
.+|.+| .|...+...-.+-++...|+|||+.+....+ ... ..+..++.+.-..+.+.++
T Consensus 58 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~---~~~~~~V~~D~~~~g~~a~~~L~ 118 (313)
T 3m9w_A 58 GVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMIND---ADIDFYISFDNEKVGELQAKALV 118 (313)
T ss_dssp TCSEEEEECSSTTSCHHHHHHHHTTTCEEEEESSCCTT---SCCSEEEEECHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCChhhhHHHHHHHHHCCCeEEEECCcCCC---CCceEEEecCHHHHHHHHHHHHH
Confidence 456444 4444444444455666789999999775322 112 2333466666666666666
No 205
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=37.92 E-value=1.9e+02 Score=25.71 Aligned_cols=50 Identities=2% Similarity=-0.145 Sum_probs=32.5
Q ss_pred CchHHHHHHH---cCCeEEee-CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 314 VCTATAEALA---MGKIVVCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 314 ~~~~~lEAma---~G~PVV~t-~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
-|..+++.+. ..+|||.. .... .+.+..|.++++.. +.+++.++|.+++.
T Consensus 187 ~G~~l~~~ir~~~~~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 246 (254)
T 2ayx_A 187 DGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAE 246 (254)
T ss_dssp CCHHHHHHHHHHHCCSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHH
Confidence 3555555443 46787754 3332 45556778888864 89999999988764
No 206
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=37.80 E-value=1.1e+02 Score=25.95 Aligned_cols=103 Identities=9% Similarity=-0.011 Sum_probs=59.2
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEec-CCCCCCchHHHHHHH---cCCeEEee-C
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNP-STTDVVCTATAEALA---MGKIVVCA-N 332 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~p-S~~E~~~~~~lEAma---~G~PVV~t-~ 332 (518)
.++.++.+.+. .+.+....+..|..+.......+..+.+. ..|+.+.- ...+.-|..+++.+. .++|||.- .
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~ 84 (208)
T 1yio_A 5 PTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITA 84 (208)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEES
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeC
Confidence 46667765433 35566666666665543322222222222 23555543 334445777777764 36777654 3
Q ss_pred CCC----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 333 HPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 333 ~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
... .+.+..|..+++.. +++++..+|..++.
T Consensus 85 ~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (208)
T 1yio_A 85 HGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQ 121 (208)
T ss_dssp CTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHh
Confidence 332 44556677888864 89999999998875
No 207
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=37.78 E-value=65 Score=29.30 Aligned_cols=98 Identities=13% Similarity=0.132 Sum_probs=56.6
Q ss_pred ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-hHHHHHHHHHcCCe---EEEeCCCC--ChHHHHhhcCeeEecC-CCC
Q 010098 240 WSKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLV---VRVYPGRD--HADPIFHDYKVFLNPS-TTD 312 (518)
Q Consensus 240 ~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l~---v~~~~~~~--~~~~l~~~adv~v~pS-~~E 312 (518)
-.|=+..|.+|+.-+..-...-++.++|.... .+.+++.+++-|.. .+|+|+.- ....-+..=|+++... ..|
T Consensus 84 L~kT~~~L~~A~~~i~~~~~~~~iLfVgTk~~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~~~~~f~~PdlliV~Dp~~e 163 (253)
T 3bch_A 84 LKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRAD 163 (253)
T ss_dssp HHHHHHHHHHHHHHHHTCSSGGGEEEEECSHHHHHHHHHHHHHHCCEEEESCCCTTTTTCCSCSTTCSCSEEEESCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHhCCeeecceecCCcccCccccccCCCCEEEEECCCcc
Confidence 34445566666666652112356888887544 35566777776654 23555421 1112234456555443 233
Q ss_pred CCchHHHHHHHcCCeEEee-CCCC-cccc
Q 010098 313 VVCTATAEALAMGKIVVCA-NHPS-NDFF 339 (518)
Q Consensus 313 ~~~~~~lEAma~G~PVV~t-~~g~-~e~i 339 (518)
-.++.||.-.|+|||+- |..+ ++.+
T Consensus 164 --~~AI~EA~~lgIPvIalvDTn~dp~~V 190 (253)
T 3bch_A 164 --HQPLTEASYVNLPTIALCNTDSPLRYV 190 (253)
T ss_dssp --HHHHHHHHHTTCCEEEEECTTCCCTTC
T ss_pred --chHHHHHHHhCCCEEEEEcCCCCcccC
Confidence 46899999999999998 5544 5443
No 208
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=37.75 E-value=94 Score=29.62 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=29.3
Q ss_pred CChHHHHhhcCeeEe--cCCCCC---CchHHHHHHHcCCeEEeeCCC
Q 010098 293 DHADPIFHDYKVFLN--PSTTDV---VCTATAEALAMGKIVVCANHP 334 (518)
Q Consensus 293 ~~~~~l~~~adv~v~--pS~~E~---~~~~~lEAma~G~PVV~t~~g 334 (518)
.+.+++++.||+.++ |...|+ ++-..++.|--|.-+|-+..|
T Consensus 186 ~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG 232 (334)
T 3kb6_A 186 TSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARG 232 (334)
T ss_dssp CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCG
T ss_pred cCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCcc
Confidence 467899999996654 444454 566677777777777766554
No 209
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=37.72 E-value=1.5e+02 Score=27.44 Aligned_cols=61 Identities=11% Similarity=0.001 Sum_probs=34.4
Q ss_pred hcCeeE-ecCCCCCCchHHHHHHHcCCeEEeeCCCCccccccCCcEEe-eCCHHHHHHHHHHHHh
Q 010098 301 DYKVFL-NPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRT-YDGRNGFVEATLKALA 363 (518)
Q Consensus 301 ~adv~v-~pS~~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~-~~d~~~l~~~i~~ll~ 363 (518)
..|.+| .|...+...-.+-++...|+|||+.+....+. .....++ .|+.+.-..+.+.+++
T Consensus 59 ~vdgiIi~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~--~~~~~~V~~D~~~~g~~a~~~l~~ 121 (330)
T 3uug_A 59 GVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLIRNS--GDVSYYATFDNFQVGVLQATSITD 121 (330)
T ss_dssp TCSEEEECCSSGGGGHHHHHHHHHTTCEEEEESSCCCSC--TTCCEEEEECHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCchhHHHHHHHHHHCCCCEEEECCCCCCC--CceeEEEEeCHHHHHHHHHHHHHH
Confidence 566444 44433344445667788999999998754221 1122233 4666665555555555
No 210
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=37.59 E-value=49 Score=29.15 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=27.1
Q ss_pred CccccEEEEEeeccCCcccccccchHHHHHHHHh-cCCeeEEEEec
Q 010098 2 DRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAK-DGERRVTLVIP 46 (518)
Q Consensus 2 ~~~~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~-~gg~~V~vi~~ 46 (518)
+.+++||++..+... | +.....+++.|.+ .| ++|.++.+
T Consensus 16 ~l~~k~IllgvTGsi----a-a~k~~~lv~~L~~~~g-~~V~vv~T 55 (206)
T 1qzu_A 16 MERKFHVLVGVTGSV----A-ALKLPLLVSKLLDIPG-LEVAVVTT 55 (206)
T ss_dssp CCSSEEEEEEECSSG----G-GGTHHHHHHHHC---C-EEEEEEEC
T ss_pred ccCCCEEEEEEeChH----H-HHHHHHHHHHHhcccC-CEEEEEEC
Confidence 344578888877542 2 5566778899988 77 99999987
No 211
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=37.56 E-value=38 Score=28.04 Aligned_cols=45 Identities=16% Similarity=0.070 Sum_probs=33.0
Q ss_pred CCccccEEEEEeecc-------CCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQQHIAIFTTAS-------LPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~rI~ivt~~~-------~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|+.+++.+|+|.+.. ++...|+..-...+.+.+.+.| ++|.+..-
T Consensus 11 m~~~~rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~Lg-F~V~~~~d 62 (146)
T 2dko_A 11 MDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLK-YEVRNKND 62 (146)
T ss_dssp CCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTT-CEEEEEES
T ss_pred CCCCCceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCC-CEEEEeeC
Confidence 666667787777542 3456787777777888888888 99998843
No 212
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=37.56 E-value=47 Score=31.96 Aligned_cols=73 Identities=8% Similarity=0.135 Sum_probs=46.9
Q ss_pred HhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhc--CeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 256 KELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDY--KVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 256 ~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~a--dv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
...|+++++-+-+ .+.+..++.+++++.. . .+.+.+++++.. |+.+..+....-.-.+.+|+..|++|++-..
T Consensus 26 ~~~~~~~l~av~d-~~~~~~~~~a~~~~~~-~---~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKP 100 (359)
T 3m2t_A 26 LQMQDIRIVAACD-SDLERARRVHRFISDI-P---VLDNVPAMLNQVPLDAVVMAGPPQLHFEMGLLAMSKGVNVFVEKP 100 (359)
T ss_dssp HTCTTEEEEEEEC-SSHHHHGGGGGTSCSC-C---EESSHHHHHHHSCCSEEEECSCHHHHHHHHHHHHHTTCEEEECSC
T ss_pred HhCCCcEEEEEEc-CCHHHHHHHHHhcCCC-c---ccCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEECC
Confidence 3456788775554 4556666666655421 1 236888999866 7666655433334457789999999998543
No 213
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=37.02 E-value=1.4e+02 Score=23.69 Aligned_cols=102 Identities=7% Similarity=0.005 Sum_probs=57.4
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHhh---cCeeEec-CCCCCCchHHHHHHH---cCCeEEee-
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHD---YKVFLNP-STTDVVCTATAEALA---MGKIVVCA- 331 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~---adv~v~p-S~~E~~~~~~lEAma---~G~PVV~t- 331 (518)
.+++|+.+.+. .+.+....+. +..+.......+..+.+.. .|+++.- ...+.-|..+++.+. ...|||..
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 83 (151)
T 3kcn_A 5 ERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLMLT 83 (151)
T ss_dssp CEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEEE
Confidence 46667765333 2344444432 4444444333333344432 3766553 334455667766654 36776654
Q ss_pred CCCC----ccccccC-CcEEeeC--CHHHHHHHHHHHHh
Q 010098 332 NHPS----NDFFKQF-PNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 332 ~~g~----~e~i~~~-~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
.... .+.+..| ..+++.. +.+++.++|..++.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~ 122 (151)
T 3kcn_A 84 GNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIK 122 (151)
T ss_dssp CGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHH
Confidence 3332 3455566 6788863 99999999998775
No 214
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=36.89 E-value=54 Score=27.77 Aligned_cols=136 Identities=12% Similarity=0.091 Sum_probs=88.8
Q ss_pred ccEEEEEE-eecccCCHHHHHHHHHHHHHhcCCcEEEEEeC-CCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeE
Q 010098 229 TKGAYYIG-RMVWSKGYEELLGLLNIYHKELAGLEMDLYGN-GEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFL 306 (518)
Q Consensus 229 ~~~il~vG-r~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~-g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v 306 (518)
..+|+..| .+.-.|....+-+....|+++.-+++|-|--- |..+-.+.-+..+.+..-......+++.+-+..+|+.+
T Consensus 23 ~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMdeIN~df~~tDv~l 102 (184)
T 1d4o_A 23 NSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHPVAGRMPGQLNVLLAEAGVPYDIVLEMDEINHDFPDTDLVL 102 (184)
T ss_dssp SEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEEECTTCSSSTTHHHHHHHHHTCCGGGEEEHHHHGGGGGGCSEEE
T ss_pred CeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceEEEEEecCCHHHHHhHHHHhhhhhhcCEEE
Confidence 35555566 45567788888888888888877777766211 34455555555555554222223345556677888654
Q ss_pred --------ecCC-----CCCCchHHHHHHHcCCeEEeeCC---C--C--ccccccCCcEEeeCCHHHHHHHHHHHHhC
Q 010098 307 --------NPST-----TDVVCTATAEALAMGKIVVCANH---P--S--NDFFKQFPNCRTYDGRNGFVEATLKALAE 364 (518)
Q Consensus 307 --------~pS~-----~E~~~~~~lEAma~G~PVV~t~~---g--~--~e~i~~~~~g~~~~d~~~l~~~i~~ll~~ 364 (518)
+|+- +--+|++++|..-+..-+|.-+. | | ++++-...+..++.|..+..+.|...++.
T Consensus 103 VIGANDvVNPaA~~dp~SpI~GMPvl~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~~~~~l~~~l~~ 180 (184)
T 1d4o_A 103 VIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGDAKKTCDALQAKVRE 180 (184)
T ss_dssp EESCSGGGCTHHHHCTTSTTTTCCCCCGGGSSCEEEEESSSCCCTTCCCCGGGGSTTEEEEESCHHHHHHHHHHHHHT
T ss_pred EecCCccCCCccccCCCCCccCCeeeehhhCCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHHHHHHHHHHHHH
Confidence 3432 11278899999888877777654 2 2 67777777888889998888888776653
No 215
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=36.64 E-value=19 Score=36.44 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=27.1
Q ss_pred ccEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 5 QQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 5 ~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
++||+++.. |. .|=..-++.+++.|+++| |+||++++
T Consensus 8 ~~~vl~~p~---p~-~GHi~P~l~La~~L~~rG-~~VT~v~t 44 (482)
T 2pq6_A 8 KPHVVMIPY---PV-QGHINPLFKLAKLLHLRG-FHITFVNT 44 (482)
T ss_dssp CCEEEEECC---SS-HHHHHHHHHHHHHHHHTT-CEEEEEEE
T ss_pred CCEEEEecC---cc-chhHHHHHHHHHHHHhCC-CeEEEEeC
Confidence 368988863 32 343344467889999998 99999987
No 216
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=36.54 E-value=2.4e+02 Score=25.33 Aligned_cols=61 Identities=10% Similarity=-0.074 Sum_probs=33.3
Q ss_pred hcCeeE-ecCCCCCCchHHHHHHHcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHh
Q 010098 301 DYKVFL-NPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALA 363 (518)
Q Consensus 301 ~adv~v-~pS~~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~ 363 (518)
..|.+| .|...+...-.+-++...|+|||..+...... +....+..|+.+....+.+.+++
T Consensus 64 ~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~V~~D~~~~g~~~~~~l~~ 125 (293)
T 3l6u_A 64 KVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRMIRSD--AVVSSITSNNQMIGEQLASYIKN 125 (293)
T ss_dssp TCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSCCCCT--TCSEEEEECHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCChHHHHHHHHHHHHcCCCEEEecCCCCCC--cceeEEecCHHHHHHHHHHHHHH
Confidence 456444 44444443344555667899999997654210 11233334666665555555554
No 217
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=36.49 E-value=2.2e+02 Score=25.60 Aligned_cols=106 Identities=15% Similarity=0.116 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEe-cCCCC---CCchHH
Q 010098 243 GYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLN-PSTTD---VVCTAT 318 (518)
Q Consensus 243 g~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~-pS~~E---~~~~~~ 318 (518)
-+..+++.+.+..++. ++.+.+.....+.+...+.++.+ .-+..|.+|+ |...+ ...-.+
T Consensus 29 ~~~~~~~gi~~~a~~~-g~~~~~~~~~~~~~~~~~~~~~l---------------~~~~vdgiIi~~~~~~~~~~~~~~~ 92 (298)
T 3tb6_A 29 IFPSIIRGIESYLSEQ-GYSMLLTSTNNNPDNERRGLENL---------------LSQHIDGLIVEPTKSALQTPNIGYY 92 (298)
T ss_dssp THHHHHHHHHHHHHHT-TCEEEEEECTTCHHHHHHHHHHH---------------HHTCCSEEEECCSSTTSCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCEEEEEeCCCChHHHHHHHHHH---------------HHCCCCEEEEecccccccCCcHHHH
Confidence 3556666666554443 56776665544433222222210 1124564443 43222 222345
Q ss_pred HHHHHcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHhCCCC
Q 010098 319 AEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEEPA 367 (518)
Q Consensus 319 lEAma~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~~~ 367 (518)
-++...|+|||..+...... ....+..|+.+....+...+++....
T Consensus 93 ~~~~~~~iPvV~~~~~~~~~---~~~~V~~d~~~~~~~a~~~L~~~G~~ 138 (298)
T 3tb6_A 93 LNLEKNGIPFAMINASYAEL---AAPSFTLDDVKGGMMAAEHLLSLGHT 138 (298)
T ss_dssp HHHHHTTCCEEEESSCCTTC---SSCEEEECHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhcCCCEEEEecCcCCC---CCCEEEeCcHHHHHHHHHHHHHCCCC
Confidence 56677899999998753221 22344457777777777777775443
No 218
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=36.29 E-value=63 Score=27.19 Aligned_cols=103 Identities=10% Similarity=0.018 Sum_probs=62.0
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHhh--cCeeEecC-CCCCCchHHHHHHH---cCCeEEee-
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPS-TTDVVCTATAEALA---MGKIVVCA- 331 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~--adv~v~pS-~~E~~~~~~lEAma---~G~PVV~t- 331 (518)
..+++|+.+.+. ...+....+..|..+.......+.-+.+.. .|+.+.-. ..+.-|..+++.+. ...|||.-
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt 86 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLT 86 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEe
Confidence 356777776443 356666667767655443333333344433 46655432 24445777777664 36787654
Q ss_pred CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHH
Q 010098 332 NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKAL 362 (518)
Q Consensus 332 ~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll 362 (518)
.... .+.+..|..+++.. +++++..+|..++
T Consensus 87 ~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~ 123 (184)
T 3rqi_A 87 GYASIATAVQAVKDGADNYLAKPANVESILAALQTNA 123 (184)
T ss_dssp SSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTH
T ss_pred CCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHH
Confidence 3333 45567788888874 8999988887754
No 219
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=36.13 E-value=1.6e+02 Score=23.54 Aligned_cols=104 Identities=8% Similarity=-0.004 Sum_probs=64.7
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCCe-EEEeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHH-----cCCeEE
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKLV-VRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA-----MGKIVV 329 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l~-v~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma-----~G~PVV 329 (518)
+.++.|+=+.+. +..++...++.|.. +.....-.+.-+.++ ..|+.+.=- .-+.-|..+++.+- ..+|||
T Consensus 12 ~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI 91 (134)
T 3to5_A 12 NMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVL 91 (134)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEE
Confidence 577788766443 46667777777764 322222222223443 346665432 23445888888874 467877
Q ss_pred ee-CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 330 CA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 330 ~t-~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
.- ..+. .+.++.|.++++.. +++++.++|.++++
T Consensus 92 ~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 92 MITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp EEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 54 3333 45567788999975 99999999998864
No 220
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=35.86 E-value=48 Score=28.14 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=33.0
Q ss_pred CCccccEEEEEeecc-------CCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQQHIAIFTTAS-------LPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~rI~ivt~~~-------~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|+.+++.+|+|.+.. ++...|+..-...+.+.|.+.| ++|.+..-
T Consensus 28 m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~Lg-F~V~~~~d 79 (167)
T 1pyo_A 28 LQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLG-YDVHVLCD 79 (167)
T ss_dssp CCCSSSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTT-EEEEEEES
T ss_pred CCCCCceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCC-CEEEEeeC
Confidence 666667877776433 3456787777788888898888 99988743
No 221
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=35.65 E-value=36 Score=31.62 Aligned_cols=45 Identities=16% Similarity=0.049 Sum_probs=33.4
Q ss_pred CCccccEEEEEeec--c-----CCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQQHIAIFTTA--S-----LPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~rI~ivt~~--~-----~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|+.+++++|+|.+. | ++...|+..-...+.+.|.+.| ++|++..-
T Consensus 39 m~~~~rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LG-F~V~~~~d 90 (277)
T 4ehd_A 39 MDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLK-YEVRNKND 90 (277)
T ss_dssp CCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTT-CEEEEEES
T ss_pred CCCCCCCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHHHCC-CEEEEecC
Confidence 77777888888742 2 3456777777777888899998 99998743
No 222
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=35.29 E-value=36 Score=32.23 Aligned_cols=45 Identities=29% Similarity=0.259 Sum_probs=34.2
Q ss_pred CCccccEEEEEeecc------CCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQQHIAIFTTAS------LPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~rI~ivt~~~------~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|+.+++++|+|.+.. ++...|+..-...+.+.|.+.| ++|++..-
T Consensus 55 m~~~~rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LG-F~V~~~~d 105 (310)
T 2nn3_C 55 MNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLG-FKVTVFPN 105 (310)
T ss_dssp CCSSBCCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTT-CEEEEEES
T ss_pred CCCCCcCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCC-CEEEEecC
Confidence 666667888877542 4567887888888889999998 99988843
No 223
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=35.24 E-value=1.7e+02 Score=28.85 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=47.5
Q ss_pred hcCCcEEEEEeCCCChHHHHHHHH---HcCCe-EEEe-CCCCChHHHHh--hcCeeEecCCCCCCchHHHHHHHcCCeEE
Q 010098 257 ELAGLEMDLYGNGEDFDQIQRAAK---KLKLV-VRVY-PGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVV 329 (518)
Q Consensus 257 ~~~~~~l~ivG~g~~~~~l~~~~~---~~~l~-v~~~-~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVV 329 (518)
..++++++-+-+ .+.+..++.++ ++++. ...+ ++.++.+++++ ..|+.+..+....-.-.+.+||..|++|+
T Consensus 41 ~~~~~~lvav~d-~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~h~~~~~~al~aGkhV~ 119 (444)
T 2ixa_A 41 RRDDVEIVAFAD-PDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSSPWEWHHEHGVAAMKAGKIVG 119 (444)
T ss_dssp TCTTEEEEEEEC-SCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECCCGGGHHHHHHHHHHTTCEEE
T ss_pred hCCCcEEEEEEe-CCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCeEE
Confidence 456788876654 44555555544 44542 3333 24457888988 46866666544444555778999999999
Q ss_pred eeC
Q 010098 330 CAN 332 (518)
Q Consensus 330 ~t~ 332 (518)
|-.
T Consensus 120 ~EK 122 (444)
T 2ixa_A 120 MEV 122 (444)
T ss_dssp ECC
T ss_pred EeC
Confidence 864
No 224
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=34.88 E-value=2.2e+02 Score=25.77 Aligned_cols=62 Identities=11% Similarity=-0.003 Sum_probs=34.9
Q ss_pred hcCeeE-ecCCCCCCchHHHHHHHcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHhC
Q 010098 301 DYKVFL-NPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAE 364 (518)
Q Consensus 301 ~adv~v-~pS~~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~~ 364 (518)
..|.+| .|...+...-.+-++...|+|||+.+....+. .....+..++.+....+.+.+++.
T Consensus 61 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~V~~d~~~~g~~~~~~l~~~ 123 (305)
T 3g1w_A 61 NPAGIAISAIDPVELTDTINKAVDAGIPIVLFDSGAPDS--HAHSFLGTNNYNAGMNAAYKMAEL 123 (305)
T ss_dssp CCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCTTS--CCSCEEECCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEECCCCCCC--ceeEEECcCHHHHHHHHHHHHHHH
Confidence 466444 44444444445666778999999987753210 012333445666666666666554
No 225
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=34.47 E-value=1.1e+02 Score=28.65 Aligned_cols=21 Identities=14% Similarity=0.347 Sum_probs=17.3
Q ss_pred HHhhcCCCCCcEEEEcCCchh
Q 010098 109 ITEIIPDEEADIAVLEEPEHL 129 (518)
Q Consensus 109 l~~~i~~~~~Dvi~~~~~~~~ 129 (518)
+.+++.+.++|+|++..|...
T Consensus 59 ~~~ll~~~~~D~V~i~tp~~~ 79 (329)
T 3evn_A 59 LEDMLADESIDVIYVATINQD 79 (329)
T ss_dssp HHHHHTCTTCCEEEECSCGGG
T ss_pred HHHHhcCCCCCEEEECCCcHH
Confidence 778888888999999888655
No 226
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=34.41 E-value=1e+02 Score=28.95 Aligned_cols=70 Identities=13% Similarity=0.128 Sum_probs=44.6
Q ss_pred hcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHH-hhcCeeEecCCCCCCchHHHHHHHcCCeEEeeC
Q 010098 257 ELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIF-HDYKVFLNPSTTDVVCTATAEALAMGKIVVCAN 332 (518)
Q Consensus 257 ~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~-~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~ 332 (518)
..++++++ +-+ .+.+..++.+++++.... ..+..+.+ ...|+.+..+......-.+.+|+..|++|++-.
T Consensus 24 ~~~~~~l~-v~d-~~~~~~~~~a~~~g~~~~----~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~al~~Gk~V~~EK 94 (323)
T 1xea_A 24 QWPDIELV-LCT-RNPKVLGTLATRYRVSAT----CTDYRDVLQYGVDAVMIHAATDVHSTLAAFFLHLGIPTFVDK 94 (323)
T ss_dssp TSTTEEEE-EEC-SCHHHHHHHHHHTTCCCC----CSSTTGGGGGCCSEEEECSCGGGHHHHHHHHHHTTCCEEEES
T ss_pred hCCCceEE-EEe-CCHHHHHHHHHHcCCCcc----ccCHHHHhhcCCCEEEEECCchhHHHHHHHHHHCCCeEEEeC
Confidence 34578888 443 466777778888775311 12222334 568877776654444555678999999999754
No 227
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=34.20 E-value=1.6e+02 Score=22.74 Aligned_cols=107 Identities=9% Similarity=-0.055 Sum_probs=59.2
Q ss_pred CCcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHhh---cCeeEecC-CCCCCchHHHHHHHc---CCeEEe
Q 010098 259 AGLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHD---YKVFLNPS-TTDVVCTATAEALAM---GKIVVC 330 (518)
Q Consensus 259 ~~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~---adv~v~pS-~~E~~~~~~lEAma~---G~PVV~ 330 (518)
+..+++++.+.+. .+.+....+..|..+.......+..+.+.. .|+.+.-. ..+.-|..+++.+.. .+|+|.
T Consensus 14 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ 93 (138)
T 2b4a_A 14 QPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLI 93 (138)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 3567777776443 355666666666655443332333333333 57665543 334457778887753 577765
Q ss_pred eC--CCCccccccCCcEEeeC--CHHHHHHHHHHHHhCC
Q 010098 331 AN--HPSNDFFKQFPNCRTYD--GRNGFVEATLKALAEE 365 (518)
Q Consensus 331 t~--~g~~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~ 365 (518)
.. ....+....-..+++.. +.+++..+|..++...
T Consensus 94 ls~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~ 132 (138)
T 2b4a_A 94 LTTGRHELIESSEHNLSYLQKPFAISELRAAIDYHKPSM 132 (138)
T ss_dssp EESCC--CCCCSSSCEEEEESSCCHHHHHHHHHHTCCC-
T ss_pred EECCCCCHHHHHHHHHheeeCCCCHHHHHHHHHHHHHhc
Confidence 53 33322221114566653 8999999999877543
No 228
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=34.14 E-value=45 Score=28.22 Aligned_cols=45 Identities=11% Similarity=0.006 Sum_probs=34.0
Q ss_pred CCccccEEEEEeec--------------cCCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQQHIAIFTTA--------------SLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~rI~ivt~~--------------~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|+.+++.+|+|.+. .++...|+..-...+.+.+.+.| ++|.+..-
T Consensus 18 m~~~~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~Lg-F~V~~~~d 76 (164)
T 1qtn_A 18 MKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELH-FEIKPHDD 76 (164)
T ss_dssp CCCSSCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHHHTT-CEEEEEES
T ss_pred CCCCCceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHHHCC-CEEEEecC
Confidence 66666777777765 24567887888888888898898 99988743
No 229
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=33.80 E-value=1.3e+02 Score=22.49 Aligned_cols=102 Identities=8% Similarity=-0.114 Sum_probs=55.2
Q ss_pred EEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHH--cCCeEEee-CCC
Q 010098 262 EMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA--MGKIVVCA-NHP 334 (518)
Q Consensus 262 ~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma--~G~PVV~t-~~g 334 (518)
++.++.+.+. .+.+.......+..+.......+....+. ..|+.+.-. ..+.-|..+++.+. ...|+|.. ...
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 82 (121)
T 1zh2_A 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARS 82 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCC
T ss_pred EEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEECCC
Confidence 4556655332 34555555555554433222112212222 356655432 23334666777765 34666544 333
Q ss_pred C----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 335 S----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 335 ~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
. .+.+..|..+++.. +.+++..++..++.
T Consensus 83 ~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (121)
T 1zh2_A 83 EESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 (121)
T ss_dssp SHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHH
Confidence 3 34556678888864 89999999988764
No 230
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=33.79 E-value=57 Score=24.74 Aligned_cols=103 Identities=11% Similarity=0.003 Sum_probs=56.3
Q ss_pred EEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHhh--cCeeEecCC-CCCCchHHHHHH---HcCCeEEee-CC
Q 010098 262 EMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPST-TDVVCTATAEAL---AMGKIVVCA-NH 333 (518)
Q Consensus 262 ~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~--adv~v~pS~-~E~~~~~~lEAm---a~G~PVV~t-~~ 333 (518)
++.++.+.+. ...+.......+..+.......+..+.+.. .|+++.-.. .+.-|..+++.+ ..+.|+|.. ..
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~s~~ 84 (124)
T 1dc7_A 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAH 84 (124)
T ss_dssp CCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCCCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCBCCS
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEEecC
Confidence 4566666554 455666666566555444433333344432 466554322 211233344443 345776654 33
Q ss_pred CC----ccccccCCcEEeeC--CHHHHHHHHHHHHhC
Q 010098 334 PS----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 364 (518)
Q Consensus 334 g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~ 364 (518)
.. .+.+..|..+++.. +.+++...+..++..
T Consensus 85 ~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 121 (124)
T 1dc7_A 85 SDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (124)
T ss_dssp TTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHh
Confidence 22 45556677777763 899999999887753
No 231
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=33.76 E-value=1.7e+02 Score=22.78 Aligned_cols=104 Identities=4% Similarity=-0.020 Sum_probs=57.9
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHc-CCeEE-EeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHHc---CCeEE-
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKL-KLVVR-VYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM---GKIVV- 329 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~-~l~v~-~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~---G~PVV- 329 (518)
..+++++.+.+. .+.+....... +..+. ......+..+.+. ..|+.+.-. ..+.-|..+++.+.. ..|||
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 88 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVF 88 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEEEE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHccCCCceEEE
Confidence 467777776443 34555555554 44321 2222222223333 346665543 334457777777754 34554
Q ss_pred eeCCCC--ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 330 CANHPS--NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 330 ~t~~g~--~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
.+.... .+.+..|..+++.. +.+++..+|..++.
T Consensus 89 ~s~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (143)
T 2qv0_A 89 ITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTT 126 (143)
T ss_dssp EESCCTTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 344332 55566778888864 88999999888765
No 232
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=33.69 E-value=77 Score=30.00 Aligned_cols=73 Identities=8% Similarity=0.064 Sum_probs=48.5
Q ss_pred cCCcEEEEEeCCC---ChHHHHHHHHHcCCeEEEeCCCCChHHHHhh--cCeeEecCCCCCCchHHHHHHHcCCeEEeeC
Q 010098 258 LAGLEMDLYGNGE---DFDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPSTTDVVCTATAEALAMGKIVVCAN 332 (518)
Q Consensus 258 ~~~~~l~ivG~g~---~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~--adv~v~pS~~E~~~~~~lEAma~G~PVV~t~ 332 (518)
.++++++-+-+.. ..+.+.+.++++++.... +.+.+++++. .|+.+..+....-.-.+.+|+..|++|++-.
T Consensus 22 ~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EK 98 (337)
T 3ip3_A 22 DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKK---YNNWWEMLEKEKPDILVINTVFSLNGKILLEALERKIHAFVEK 98 (337)
T ss_dssp CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEE---CSSHHHHHHHHCCSEEEECSSHHHHHHHHHHHHHTTCEEEECS
T ss_pred CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcc---cCCHHHHhcCCCCCEEEEeCCcchHHHHHHHHHHCCCcEEEeC
Confidence 5678888766633 235666666767754333 4688888885 6776666543333445788999999999764
Q ss_pred C
Q 010098 333 H 333 (518)
Q Consensus 333 ~ 333 (518)
-
T Consensus 99 P 99 (337)
T 3ip3_A 99 P 99 (337)
T ss_dssp S
T ss_pred C
Confidence 3
No 233
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Probab=33.43 E-value=1.7e+02 Score=27.71 Aligned_cols=82 Identities=9% Similarity=0.030 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEE-e------------CCCCChHHHHhhcCeeEecCCCC
Q 010098 246 ELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRV-Y------------PGRDHADPIFHDYKVFLNPSTTD 312 (518)
Q Consensus 246 ~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~-~------------~~~~~~~~l~~~adv~v~pS~~E 312 (518)
.+++++ .+.|+++++-+.+. ..+....+++..|..+.- + .-..+.++++...|+.+..+-..
T Consensus 16 ~~~r~l----~~~~~~elvav~d~-~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDvV~~aTp~~ 90 (334)
T 2czc_A 16 RVAYAV----TKQDDMELIGITKT-KPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDIIVDATPGG 90 (334)
T ss_dssp HHHHHH----HTCTTEEEEEEEES-SCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEEEECCSTT
T ss_pred HHHHHH----hcCCCCEEEEEEcC-CHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCEEEECCCcc
Confidence 355555 34578888777763 345555666666643221 0 11235667788899777665433
Q ss_pred CCchHHHHHHHcCCeEEeeC
Q 010098 313 VVCTATAEALAMGKIVVCAN 332 (518)
Q Consensus 313 ~~~~~~lEAma~G~PVV~t~ 332 (518)
.---....++..|++||++.
T Consensus 91 ~h~~~a~~~l~aGk~Vi~sa 110 (334)
T 2czc_A 91 IGAKNKPLYEKAGVKAIFQG 110 (334)
T ss_dssp HHHHHHHHHHHHTCEEEECT
T ss_pred ccHHHHHHHHHcCCceEeec
Confidence 21222347888999999763
No 234
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=33.18 E-value=1.5e+02 Score=28.18 Aligned_cols=70 Identities=20% Similarity=0.161 Sum_probs=45.8
Q ss_pred hcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 257 ELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 257 ~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
..++++++-+-+ .+.+..+ .+++++.. .+.+.+++++ ..|+.+..+....-.-.+.+|+..|++|++-.-
T Consensus 26 ~~~~~~l~av~d-~~~~~~~-~a~~~g~~-----~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGkhVl~EKP 97 (359)
T 3e18_A 26 AADNLEVHGVFD-ILAEKRE-AAAQKGLK-----IYESYEAVLADEKVDAVLIATPNDSHKELAISALEAGKHVVCEKP 97 (359)
T ss_dssp TSTTEEEEEEEC-SSHHHHH-HHHTTTCC-----BCSCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred hCCCcEEEEEEc-CCHHHHH-HHHhcCCc-----eeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCCEEeeCC
Confidence 456788776554 3344433 45556642 3578889998 678777665544444457789999999998643
No 235
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=33.09 E-value=40 Score=31.80 Aligned_cols=45 Identities=13% Similarity=0.022 Sum_probs=32.8
Q ss_pred CCccccEEEEEeecc-------CCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQQHIAIFTTAS-------LPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~rI~ivt~~~-------~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|+.+++++|+|.+.. ++...|+..-...+.+.|.+.| ++|++..-
T Consensus 64 m~~~~rg~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~LG-F~V~~~~d 115 (305)
T 1f1j_A 64 MNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLG-FDVIVYND 115 (305)
T ss_dssp CCSSEEEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHT-EEEEEEES
T ss_pred cCCCCCCEEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHCC-CEEEEecC
Confidence 666678888887543 2345676777778888899998 99988743
No 236
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=32.90 E-value=79 Score=25.92 Aligned_cols=90 Identities=18% Similarity=0.285 Sum_probs=56.6
Q ss_pred HHHHHHHHHcCCeEEEeCCCCChH--HHHh----hcC-eeEecCCCCCCchHHHHHHH-cCCeEEeeCCC---Cccc---
Q 010098 273 DQIQRAAKKLKLVVRVYPGRDHAD--PIFH----DYK-VFLNPSTTDVVCTATAEALA-MGKIVVCANHP---SNDF--- 338 (518)
Q Consensus 273 ~~l~~~~~~~~l~v~~~~~~~~~~--~l~~----~ad-v~v~pS~~E~~~~~~lEAma-~G~PVV~t~~g---~~e~--- 338 (518)
+.+++.++++|+.+.++-.-.+-+ +.++ .+| +.++|.-+-..+..+.+|++ .++|+|=--.. .+|-
T Consensus 32 ~~l~~~a~~~g~~~~~~QSN~EgeLid~Ih~a~~~~dgiiiNpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE~FRh 111 (143)
T 1gqo_A 32 TDLFQFAEALHIQLTFFQSNHEGDLIDAIHEAEEQYSGIVLNPGALSHYSYAIRDAVSSISLPVVEVHLSNLYAREEFRH 111 (143)
T ss_dssp HHHHHHHHHHTCEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCHHHHHHHHTSCSCEEEEESSCGGGSCGGGG
T ss_pred HHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEEccchhccccHHHHHHHHhCCCCEEEEEecCccccccccc
Confidence 455666667777766654322222 3333 344 78899877778999999975 57998865333 2443
Q ss_pred ---cccCCcEEeeC-CHHHHHHHHHHHH
Q 010098 339 ---FKQFPNCRTYD-GRNGFVEATLKAL 362 (518)
Q Consensus 339 ---i~~~~~g~~~~-d~~~l~~~i~~ll 362 (518)
+.+...|.+.. -.+...-+++.++
T Consensus 112 ~S~~s~~a~GvI~G~G~~gY~lAl~~~~ 139 (143)
T 1gqo_A 112 QSVIAPVAKGQIVGLGAEGYKLAVRYLL 139 (143)
T ss_dssp CCSSGGGSSEEEESSTTHHHHHHHHHHH
T ss_pred ccccccceeEEEEecCHHHHHHHHHHHH
Confidence 44456777765 5666666666654
No 237
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=32.45 E-value=74 Score=28.55 Aligned_cols=92 Identities=14% Similarity=0.119 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEeCCCC--hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcC--eeEecCCCCCCch
Q 010098 243 GYEELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYK--VFLNPSTTDVVCT 316 (518)
Q Consensus 243 g~~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~ad--v~v~pS~~E~~~~ 316 (518)
|...+++.+--=+...+|+...++|+|.. .++.+...... -++-. .-| +++.|.-.-+-|.
T Consensus 15 gts~~idl~LDErAdRedI~vrv~gsGaKm~pe~~~~~~~~~-------------~~~~~~~~pDfvI~isPN~a~PGP~ 81 (283)
T 1qv9_A 15 GTSMMMDMLLDERADREDVEFRVVGTSVKMDPECVEAAVEMA-------------LDIAEDFEPDFIVYGGPNPAAPGPS 81 (283)
T ss_dssp HHHHHTTGGGSTTSCCSSEEEEEEECTTCCSHHHHHHHHHHH-------------HHHHHHHCCSEEEEECSCTTSHHHH
T ss_pred chHHHHHHHHHhhhccCCceEEEeccCCCCCHHHHHHHHHHh-------------hhhhhhcCCCEEEEECCCCCCCCch
Confidence 34455555432234557899999999876 34444332210 00011 223 4444544555677
Q ss_pred HHHHHH-HcCCeEEe-eCCCC---ccccccCCcEEe
Q 010098 317 ATAEAL-AMGKIVVC-ANHPS---NDFFKQFPNCRT 347 (518)
Q Consensus 317 ~~lEAm-a~G~PVV~-t~~g~---~e~i~~~~~g~~ 347 (518)
..-|.+ +.|+|+|. +|.++ .+-+++..-|++
T Consensus 82 ~ARE~l~~~~iP~IvI~D~p~~K~kd~l~~~g~GYI 117 (283)
T 1qv9_A 82 KAREMLADSEYPAVIIGDAPGLKVKDEMEEQGLGYI 117 (283)
T ss_dssp HHHHHHHTSSSCEEEEEEGGGGGGHHHHHHTTCEEE
T ss_pred HHHHHHHhCCCCEEEEcCCcchhhHHHHHhcCCcEE
Confidence 788887 58898554 56665 666667777776
No 238
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=32.34 E-value=1.3e+02 Score=27.23 Aligned_cols=59 Identities=14% Similarity=0.045 Sum_probs=33.9
Q ss_pred hcCeeE-ecCCCCCCchHHHHHHHcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHh
Q 010098 301 DYKVFL-NPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALA 363 (518)
Q Consensus 301 ~adv~v-~pS~~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~ 363 (518)
.+|.+| .|...+...-.+-++...|+|||+.+....+ ....+..|+.+....+...+++
T Consensus 61 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~----~~~~V~~D~~~~g~~~~~~l~~ 120 (291)
T 3l49_A 61 KPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDTATPH----AINNTTSNNYSIGAELALQMVA 120 (291)
T ss_dssp CCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESCCCTT----CSEEEEECHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCChhhhHHHHHHHHHCCCcEEEecCCCCC----cCceEecChHHHHHHHHHHHHH
Confidence 466554 3433223333455567789999999875421 2233334666666666666666
No 239
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=32.16 E-value=58 Score=28.20 Aligned_cols=136 Identities=12% Similarity=0.090 Sum_probs=88.1
Q ss_pred ccEEEEEE-eecccCCHHHHHHHHHHHHHhcCCcEEEEEeC-CCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeE
Q 010098 229 TKGAYYIG-RMVWSKGYEELLGLLNIYHKELAGLEMDLYGN-GEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFL 306 (518)
Q Consensus 229 ~~~il~vG-r~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~-g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v 306 (518)
..+|+..| .+.-.|....+-|....|+++.-+++|-|--- |..+-.+.-+..+.+..-......+++.+-+..+|+.+
T Consensus 46 ~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMdeIN~df~~tDv~l 125 (207)
T 1djl_A 46 NSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHPVAGRMPGQLNVLLAEAGVPYDIVLEMDEINHDFPDTDLVL 125 (207)
T ss_dssp SEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCSSSTTHHHHHHHHTTCCGGGEEEHHHHGGGGGGCSEEE
T ss_pred CeEEEECCchHHHHHHhHHHHHHHHHHHHCCCeEEEEeCccCCCCCCCCcEEEEEeCCCHHHHhhHHHHhhhhhhcCEEE
Confidence 35555556 45566777888888888888876677766211 34455565565655654222223345556678888654
Q ss_pred --------ecCC-----CCCCchHHHHHHHcCCeEEeeCC---C--C--ccccccCCcEEeeCCHHHHHHHHHHHHhC
Q 010098 307 --------NPST-----TDVVCTATAEALAMGKIVVCANH---P--S--NDFFKQFPNCRTYDGRNGFVEATLKALAE 364 (518)
Q Consensus 307 --------~pS~-----~E~~~~~~lEAma~G~PVV~t~~---g--~--~e~i~~~~~g~~~~d~~~l~~~i~~ll~~ 364 (518)
+|+- +--+|++++|..-+..-+|.-+. | | ++++-...+-.++.|..+..+.|...++.
T Consensus 126 VIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~~~~~l~~~l~~ 203 (207)
T 1djl_A 126 VIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGDAKKTCDALQAKVRE 203 (207)
T ss_dssp EESCCGGGCTHHHHCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCCCCGGGGSTTEEEEESCHHHHHHHHHHHHHT
T ss_pred EeccccccCCccccCCCCCccCCeeecceecCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHHHHHHHHHHHHH
Confidence 3432 12278899999888877776654 2 2 67777777888889998888888877653
No 240
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=32.10 E-value=2.9e+02 Score=25.79 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=17.0
Q ss_pred HHhhcCCCCCcEEEEcCCchh
Q 010098 109 ITEIIPDEEADIAVLEEPEHL 129 (518)
Q Consensus 109 l~~~i~~~~~Dvi~~~~~~~~ 129 (518)
+.+++.+.++|+|++..|...
T Consensus 59 ~~~ll~~~~~D~V~i~tp~~~ 79 (330)
T 3e9m_A 59 YEELCKDETIDIIYIPTYNQG 79 (330)
T ss_dssp HHHHHHCTTCSEEEECCCGGG
T ss_pred HHHHhcCCCCCEEEEcCCCHH
Confidence 677777778999999888665
No 241
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=32.04 E-value=61 Score=31.50 Aligned_cols=91 Identities=13% Similarity=0.080 Sum_probs=53.9
Q ss_pred ccEEEEEEeecccCCHHHHHHHHHHHHHhcC-CcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEe
Q 010098 229 TKGAYYIGRMVWSKGYEELLGLLNIYHKELA-GLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLN 307 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~-~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~ 307 (518)
+..|..+|.- . |- .-++++ .+.+ +++|+=+-+ .+.+..++.++++|+. . +.+.++++...|+.+.
T Consensus 7 ~~rv~VvG~G-~--g~-~h~~a~----~~~~~~~elvav~~-~~~~~a~~~a~~~gv~--~---~~~~~~l~~~~D~v~i 72 (372)
T 4gmf_A 7 KQRVLIVGAK-F--GE-MYLNAF----MQPPEGLELVGLLA-QGSARSRELAHAFGIP--L---YTSPEQITGMPDIACI 72 (372)
T ss_dssp CEEEEEECST-T--TH-HHHHTT----SSCCTTEEEEEEEC-CSSHHHHHHHHHTTCC--E---ESSGGGCCSCCSEEEE
T ss_pred CCEEEEEehH-H--HH-HHHHHH----HhCCCCeEEEEEEC-CCHHHHHHHHHHhCCC--E---ECCHHHHhcCCCEEEE
Confidence 3456667741 2 32 344554 2333 477775544 3566778888999864 2 3466667777885544
Q ss_pred cCCC---CCCc-hHHHHHHHcCCeEEeeCC
Q 010098 308 PSTT---DVVC-TATAEALAMGKIVVCANH 333 (518)
Q Consensus 308 pS~~---E~~~-~~~lEAma~G~PVV~t~~ 333 (518)
.+.. .+.+ -...+|+..|++|++=.-
T Consensus 73 ~~p~~~h~~~~~~~a~~al~aGkhVl~EKP 102 (372)
T 4gmf_A 73 VVRSTVAGGAGTQLARHFLARGVHVIQEHP 102 (372)
T ss_dssp CCC--CTTSHHHHHHHHHHHTTCEEEEESC
T ss_pred ECCCcccchhHHHHHHHHHHcCCcEEEecC
Confidence 3322 2221 236778999999998754
No 242
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=31.43 E-value=1.8e+02 Score=22.50 Aligned_cols=106 Identities=9% Similarity=-0.024 Sum_probs=58.9
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHhh--cCeeEecC-CCCCCchHHHHHHHc-----CCeEEee
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPS-TTDVVCTATAEALAM-----GKIVVCA 331 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~--adv~v~pS-~~E~~~~~~lEAma~-----G~PVV~t 331 (518)
.+++++.+.+. .+.+....+..+..+.......+..+.+.. .|+.+.-. ..+.-|..+++.+.. .+|||..
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~l 83 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLML 83 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEE
Confidence 45666665433 355666666666655433322222233333 46665432 334457778888753 5677654
Q ss_pred -CCCC--cccc--ccCCcEEeeC--CHHHHHHHHHHHHhCCC
Q 010098 332 -NHPS--NDFF--KQFPNCRTYD--GRNGFVEATLKALAEEP 366 (518)
Q Consensus 332 -~~g~--~e~i--~~~~~g~~~~--d~~~l~~~i~~ll~~~~ 366 (518)
.... .... ..+..+++.. +.+++.++|..++....
T Consensus 84 s~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (138)
T 3c3m_A 84 TAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARRH 125 (138)
T ss_dssp ESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC-
T ss_pred ECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHhh
Confidence 3332 2222 2234577764 88899999999886543
No 243
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=31.39 E-value=56 Score=27.57 Aligned_cols=134 Identities=13% Similarity=0.150 Sum_probs=88.0
Q ss_pred ccEEEEEE-eecccCCHHHHHHHHHHHHHhcCCcEEEEEeC-CCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeE
Q 010098 229 TKGAYYIG-RMVWSKGYEELLGLLNIYHKELAGLEMDLYGN-GEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFL 306 (518)
Q Consensus 229 ~~~il~vG-r~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~-g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v 306 (518)
..+|+..| .+.-.|....+-+....|+++.-+++|-|--- |...-.+.-+..+.+..-......+++.+-+..+|+.+
T Consensus 24 ~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhmNVLLAEA~VPYd~v~EMdeIN~df~~tDv~l 103 (180)
T 1pno_A 24 SKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEEINSSFQTADVAF 103 (180)
T ss_dssp SEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCTTSTTHHHHHHHHTTCCGGGEEEHHHHGGGGGGCSEEE
T ss_pred CeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceEEEEeeCCCHHHHhhHHHHhhhhhhcCEEE
Confidence 45555566 45567778888888888888877777766311 34555666666666654222223345556677888553
Q ss_pred --------ecCCC-C-C---CchHHHHHHHcCCeEEeeCC---C--C--ccccccCCcEEeeCCHHHHHHHHHHHH
Q 010098 307 --------NPSTT-D-V---VCTATAEALAMGKIVVCANH---P--S--NDFFKQFPNCRTYDGRNGFVEATLKAL 362 (518)
Q Consensus 307 --------~pS~~-E-~---~~~~~lEAma~G~PVV~t~~---g--~--~e~i~~~~~g~~~~d~~~l~~~i~~ll 362 (518)
+|+-. + + +|++++|..-+..-+|.-+. | | ++++-...+-.++.|..+..+.|...+
T Consensus 104 VIGANDvvNpaA~~dp~SpI~GMPvl~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~~~~~l~~~l 179 (180)
T 1pno_A 104 VIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGDAKKMTEQIVQAM 179 (180)
T ss_dssp EESCCGGGCGGGTTCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCCCCGGGTSTTEEEEESCHHHHHHHHHHHH
T ss_pred EeccccccCchhccCCCCCcCCCeeechhhCCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHHHHHHHHHHh
Confidence 45532 2 2 78899999888877776654 2 2 677777778888899988888877654
No 244
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=30.83 E-value=1.4e+02 Score=28.65 Aligned_cols=59 Identities=20% Similarity=0.343 Sum_probs=42.0
Q ss_pred CChHHHHHHHHHcCCeEEEeCCCCChHHHHhh--cCeeEecCCCCCCchHHHHHHHcCCeEEeeC
Q 010098 270 EDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPSTTDVVCTATAEALAMGKIVVCAN 332 (518)
Q Consensus 270 ~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~--adv~v~pS~~E~~~~~~lEAma~G~PVV~t~ 332 (518)
.+.+..++.+++++... .+.+.+++++. .|+.+..+....-.-.+.+|+..|++|++-.
T Consensus 54 ~~~~~a~~~a~~~~~~~----~~~~~~~ll~~~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~~EK 114 (383)
T 3oqb_A 54 RSAEKVEALAKRFNIAR----WTTDLDAALADKNDTMFFDAATTQARPGLLTQAINAGKHVYCEK 114 (383)
T ss_dssp SSSHHHHHHHHHTTCCC----EESCHHHHHHCSSCCEEEECSCSSSSHHHHHHHHTTTCEEEECS
T ss_pred CCHHHHHHHHHHhCCCc----ccCCHHHHhcCCCCCEEEECCCchHHHHHHHHHHHCCCeEEEcC
Confidence 45677788888888631 23688889886 6766666554454556789999999999654
No 245
>2php_A Uncharacterized protein MJ0236; chlorine ION, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.03A {Methanocaldococcus jannaschii DSM2661} SCOP: c.74.1.2
Probab=30.28 E-value=2.6e+02 Score=24.16 Aligned_cols=97 Identities=10% Similarity=0.025 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHc-
Q 010098 246 ELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAM- 324 (518)
Q Consensus 246 ~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~- 324 (518)
.+-..+-...+..|+++-.+-=. ..+++.+.+++ |+.+..+....+.+ ...+.+..+-+|+.-
T Consensus 78 H~Ar~lL~a~~~~P~iRsaiNIr--y~~~i~~~l~~-g~~v~~~dr~~ePe-------------e~~tm~W~i~~a~~~~ 141 (192)
T 2php_A 78 HIAKIILSASKFNPEIRACMNIK--YDGGLIKLLKD-KFAVSSFDRKEEPP-------------NVSTMEWGTKIACEKF 141 (192)
T ss_dssp HHHHHHHHHHTTCTTCCEEEEEC--CCHHHHHHHTT-TSCEEECCGGGCCT-------------TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCceEEEEEe--cCHHHHHHHHc-CCeEEEECCCCCCc-------------ccchhhHHHHHHHHhc
Confidence 34444444446778877766543 45677777777 88777766544332 122233467777764
Q ss_pred -CCeEEeeCCCC--ccccccCCcEEee-CCHHHHHHHHHHHHh
Q 010098 325 -GKIVVCANHPS--NDFFKQFPNCRTY-DGRNGFVEATLKALA 363 (518)
Q Consensus 325 -G~PVV~t~~g~--~e~i~~~~~g~~~-~d~~~l~~~i~~ll~ 363 (518)
|.|-|..|.|+ .| +..+++ .|+.++++.+..+++
T Consensus 142 ~~~PdvIyd~G~~GkE-----P~i~vfG~dp~ev~~kv~~l~~ 179 (192)
T 2php_A 142 GGVPDIIYDRGGEGKE-----PMIRVLGRDAIEVVKKVEVIQK 179 (192)
T ss_dssp TSCCSEEEECCBBTBC-----CEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCCCCCcC-----cEEEEECCCHHHHHHHHHHHHH
Confidence 79988888875 33 334444 699999999998874
No 246
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=30.08 E-value=2.1e+02 Score=24.11 Aligned_cols=103 Identities=6% Similarity=-0.099 Sum_probs=58.8
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEE-EeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHHc--CCeEEee-C
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVR-VYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM--GKIVVCA-N 332 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~-~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~--G~PVV~t-~ 332 (518)
.+++|+.+.+. ...+.......|..+. ......+..+.+. ..|+.+.-. ..+.-|..+++.+.. ..|||.. .
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~~dlvi~D~~~p~~~g~~~~~~l~~~~~~pii~lt~ 93 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTA 93 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCSCEEEEEE
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEec
Confidence 46677765433 3555566666665544 3332223323333 346655432 334456677776643 3465544 3
Q ss_pred CCC----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 333 HPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 333 ~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
... .+.+..|..+++.. +++++..+|..++.
T Consensus 94 ~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 130 (205)
T 1s8n_A 94 FSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVS 130 (205)
T ss_dssp GGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 332 45667778888863 89999999998875
No 247
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=29.92 E-value=1.9e+02 Score=22.59 Aligned_cols=62 Identities=8% Similarity=-0.006 Sum_probs=35.9
Q ss_pred cCeeEecC-CCCCCchHHHHHHH---cCCeEEeeC-CCC----ccccccCCcEEeeC--CHHHHHHHHHHHHh
Q 010098 302 YKVFLNPS-TTDVVCTATAEALA---MGKIVVCAN-HPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 363 (518)
Q Consensus 302 adv~v~pS-~~E~~~~~~lEAma---~G~PVV~t~-~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~ 363 (518)
.|+.+.-. ..+.-|..+++.+. .+.|||... ... .+.+..|..+++.. +.+++.++|..++.
T Consensus 50 ~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 50 PNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQ 122 (141)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 46665432 33345667776664 467876553 222 44556677888864 89999999888764
No 248
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=29.60 E-value=1.3e+02 Score=26.01 Aligned_cols=104 Identities=12% Similarity=0.005 Sum_probs=60.5
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEec-CCCCCCchHHHHHHH--cCCeEEeeCC-
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNP-STTDVVCTATAEALA--MGKIVVCANH- 333 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~p-S~~E~~~~~~lEAma--~G~PVV~t~~- 333 (518)
.+++++.+.+. .+.+....+..+..+.......+..+.+. ..|+.+.- ...+.-|..+++.+. ..+|||.-..
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt~~ 84 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTAR 84 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEECC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEeCC
Confidence 46667765433 35566666666665543332222223333 35766553 233445666666654 4677765533
Q ss_pred CC----ccccccCCcEEeeC--CHHHHHHHHHHHHhC
Q 010098 334 PS----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 364 (518)
Q Consensus 334 g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~ 364 (518)
.. .+.+..|..+++.. +++++..+|..++..
T Consensus 85 ~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 85 DSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp HHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 22 34456677788763 899999999998865
No 249
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=29.45 E-value=74 Score=28.84 Aligned_cols=38 Identities=18% Similarity=0.078 Sum_probs=25.4
Q ss_pred cEEEEEeeccCC------cccccccchHHHH---HHHHhcCCeeEEEEec
Q 010098 6 QHIAIFTTASLP------WLTGTAVNPLFRA---AYLAKDGERRVTLVIP 46 (518)
Q Consensus 6 ~rI~ivt~~~~P------~~~G~~~~~~~~a---~~L~~~gg~~V~vi~~ 46 (518)
+||+|+.++..- +.+| ....+.+ ..|.+.| ++|+++++
T Consensus 10 kkvlvvlt~~~~~~~~~g~~tG--~~~~E~~~p~~~l~~aG-~~V~~aSp 56 (247)
T 3n7t_A 10 RKALLAITSAHPPFWPDGKRTG--LFFSEALHPFNELTAAG-FEVDVASE 56 (247)
T ss_dssp SEEEEECCCCCCBCSTTSCBCC--BCHHHHHHHHHHHHHTT-CEEEEEES
T ss_pred CeEEEEECCCCcccCCCCCCCc--ccHHHHHHHHHHHHHCC-CEEEEEeC
Confidence 589999887421 2234 3344443 6777777 99999998
No 250
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=29.19 E-value=1.2e+02 Score=24.98 Aligned_cols=91 Identities=13% Similarity=0.035 Sum_probs=57.7
Q ss_pred HHHHHHHHHcCCeEEEeCCCCChH--HHHhh-----cC-eeEecCCCCCCchHHHHHHH-cCCeEEeeCCC---Ccc---
Q 010098 273 DQIQRAAKKLKLVVRVYPGRDHAD--PIFHD-----YK-VFLNPSTTDVVCTATAEALA-MGKIVVCANHP---SND--- 337 (518)
Q Consensus 273 ~~l~~~~~~~~l~v~~~~~~~~~~--~l~~~-----ad-v~v~pS~~E~~~~~~lEAma-~G~PVV~t~~g---~~e--- 337 (518)
+.+++.++++|+.+.++-.-.+-+ +.++. +| +.++|.-+-..+..+.+|++ .++|+|=--.. .+|
T Consensus 31 ~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~~dgiIINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE~FR 110 (149)
T 2uyg_A 31 ALCEAWGAELGLGVVFRQTNYEGQLIEWVQQAHQEGFLAIVLNPGALTHYSYALLDAIRAQPLPVVEVHLTNLHAREEFR 110 (149)
T ss_dssp HHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTTTTTCSEEEEECGGGGGTCHHHHHHHHTSCSCEEEEESSCGGGSCGGG
T ss_pred HHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhccCCeeEEEEccchhccccHHHHHHHHhCCCCEEEEEecCcccccccc
Confidence 555666777777776654332222 33333 44 78899877778999999975 57999865333 244
Q ss_pred ---ccccCCcEEeeC-CHHHHHHHHHHHHh
Q 010098 338 ---FFKQFPNCRTYD-GRNGFVEATLKALA 363 (518)
Q Consensus 338 ---~i~~~~~g~~~~-d~~~l~~~i~~ll~ 363 (518)
++.+-..|.+.. -.+...-++..+++
T Consensus 111 h~S~~s~~a~GvI~G~G~~gY~lAl~~~~~ 140 (149)
T 2uyg_A 111 RHSVTAPACRGIVSGFGPLSYKLALVYLAE 140 (149)
T ss_dssp GCCSSGGGSSEEEESSTTHHHHHHHHHHHH
T ss_pred cccccccceeEEEEecCHHHHHHHHHHHHH
Confidence 344556777765 56666666666553
No 251
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=29.06 E-value=81 Score=29.41 Aligned_cols=98 Identities=12% Similarity=0.082 Sum_probs=56.2
Q ss_pred ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-hHHHHHHHHHcCCe---EEEeCCC--CChHHHHhhcCeeEecCC-CC
Q 010098 240 WSKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLV---VRVYPGR--DHADPIFHDYKVFLNPST-TD 312 (518)
Q Consensus 240 ~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l~---v~~~~~~--~~~~~l~~~adv~v~pS~-~E 312 (518)
-.|=++.|..|+.-+..-...-++.++|.... ...+++.+++-|.. .+++++. ......++.=|++|.... .|
T Consensus 55 L~kT~e~L~~Aa~~I~~i~~~~~ILfVgTk~~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~t~~f~ePdllvV~Dp~~d 134 (305)
T 3iz6_A 55 LGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134 (305)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCCEEEECCSHHHHHHHHHHHHHHTCEEECSCCCTTTTTTTTTSCSSCCSEEEESCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHhCCccccCcccCCcccCcccccccCCceeEEeCcccc
Confidence 34455666666665544222346778887544 34566666666643 2345542 111122345566555542 33
Q ss_pred CCchHHHHHHHcCCeEEee-CCCC-cccc
Q 010098 313 VVCTATAEALAMGKIVVCA-NHPS-NDFF 339 (518)
Q Consensus 313 ~~~~~~lEAma~G~PVV~t-~~g~-~e~i 339 (518)
-..+.||.-.|+|||+- |..+ .+.+
T Consensus 135 --~qAI~EA~~lnIPtIALvDTnsdp~~V 161 (305)
T 3iz6_A 135 --HQPIKESALGNIPTIAFCDTDSPMRYV 161 (305)
T ss_dssp --HHHHHHHHHHTCCEEEEECTTSCGGGC
T ss_pred --hHHHHHHHHcCCCEEEEEcCCCCcccc
Confidence 46789999999999986 5544 4444
No 252
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=29.00 E-value=2e+02 Score=22.13 Aligned_cols=106 Identities=9% Similarity=0.026 Sum_probs=60.5
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHhh-cCeeEecC-CCCCCchHHHHHHH--c-----CC-eE
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHD-YKVFLNPS-TTDVVCTATAEALA--M-----GK-IV 328 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~-adv~v~pS-~~E~~~~~~lEAma--~-----G~-PV 328 (518)
..++.++.+.+. .+.+....+..|..+.......+..+.+.. .|+.+.-- ..+.-|..+++.+. . .. ||
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~i 86 (136)
T 1dcf_A 7 GLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHEHKVVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLL 86 (136)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTTCSEEEEECCSSTTTTTHHHHHHHHHHC-CCSCCCEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhccCCEEEEeCCCCCCcHHHHHHHHHHhhhhccCCCceE
Confidence 467777776443 355666666667655433322222222221 27665432 23334566666664 1 23 45
Q ss_pred E-eeCCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhCC
Q 010098 329 V-CANHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEE 365 (518)
Q Consensus 329 V-~t~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~ 365 (518)
| .|.... .+.+..|..+++.. +.+++.+++.+++...
T Consensus 87 i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 130 (136)
T 1dcf_A 87 VALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPR 130 (136)
T ss_dssp EEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCC
T ss_pred EEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhchh
Confidence 4 555543 34556788888874 9999999999988654
No 253
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=28.20 E-value=76 Score=26.35 Aligned_cols=89 Identities=13% Similarity=0.221 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCCeEEEeCCCCChH--HHHhh----cC-eeEecCCCCCCchHHHHHHH-cCCeEEeeCCC---Ccc----
Q 010098 273 DQIQRAAKKLKLVVRVYPGRDHAD--PIFHD----YK-VFLNPSTTDVVCTATAEALA-MGKIVVCANHP---SND---- 337 (518)
Q Consensus 273 ~~l~~~~~~~~l~v~~~~~~~~~~--~l~~~----ad-v~v~pS~~E~~~~~~lEAma-~G~PVV~t~~g---~~e---- 337 (518)
+.+++.++++|+.+.++-.-.+-+ +.++. +| +.++|.-+-..+..+.+|++ .++|+|=--.. .+|
T Consensus 33 ~~l~~~a~~~g~~l~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE~FRh 112 (154)
T 1uqr_A 33 QHLQQSAQAQGYELDYFQANGEESLINRIHQAFQNTDFIIINPGAFTHTSVAIRDALLAVSIPFIEVHLSNVHAREPFRH 112 (154)
T ss_dssp HHHHHHHHHTTCEEEEEECSSHHHHHHHHHHTTTTCCEEEEECTTHHHHCHHHHHHHHHHTCCEEEEESSCGGGSCGGGS
T ss_pred HHHHHHHHHCCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECcchhccchHHHHHHHHhCCCCEEEEEecCccccccccc
Confidence 445556666676666554322222 33333 34 78899877667889999964 68999876433 244
Q ss_pred --ccccCCcEEeeC-CHHHHHHHHHHH
Q 010098 338 --FFKQFPNCRTYD-GRNGFVEATLKA 361 (518)
Q Consensus 338 --~i~~~~~g~~~~-d~~~l~~~i~~l 361 (518)
++.+...|.+.. -.+...-++..+
T Consensus 113 ~S~~s~~a~GvI~G~G~~gY~lAl~a~ 139 (154)
T 1uqr_A 113 HSYLSDVAKGVICGLGAKGYDYALDFA 139 (154)
T ss_dssp CCSSGGGSSEEEESSTTHHHHHHHHHH
T ss_pred ccccCcceeEEEEecCHHHHHHHHHHH
Confidence 444556777764 444444444443
No 254
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=27.97 E-value=1.2e+02 Score=25.35 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=37.0
Q ss_pred HHHhhcCeeEecCCCCCCchHHHH---HHHcCCeEEeeCCCC-----ccccccCC-----cEEeeCCHHHHHHHHHHHHh
Q 010098 297 PIFHDYKVFLNPSTTDVVCTATAE---ALAMGKIVVCANHPS-----NDFFKQFP-----NCRTYDGRNGFVEATLKALA 363 (518)
Q Consensus 297 ~l~~~adv~v~pS~~E~~~~~~lE---Ama~G~PVV~t~~g~-----~e~i~~~~-----~g~~~~d~~~l~~~i~~ll~ 363 (518)
+.++.||++|.--. +.-..+.+| |.+.|+|||+-.... +-.+.... ..+.+ |.+++...|.+.+.
T Consensus 73 ~~i~~aD~vva~~~-~~d~Gt~~EiGyA~algKPVi~l~~~~~~~~~n~M~~g~~~~~~~~~~~y-~~~el~~~l~~~~~ 150 (165)
T 2khz_A 73 NWLQQADVVVAEVT-QPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDY-AEGEVETMLDRYFE 150 (165)
T ss_dssp HHHHHCSEEEEECS-SCCHHHHHHHHHHHHTCSSEEEEECTTTTCCCCHHHHHTCCSSSEEEEEC-CTTTHHHHHHHHHH
T ss_pred HHHHhCCEEEEECC-CCCCCHHHHHHHHHHCCCEEEEEEcCCCCCcchhhhcccCccceeEEEec-CHHHHHHHHHHHHH
Confidence 67889997664221 334445555 689999999963322 11111111 12334 66777777776665
Q ss_pred C
Q 010098 364 E 364 (518)
Q Consensus 364 ~ 364 (518)
.
T Consensus 151 ~ 151 (165)
T 2khz_A 151 A 151 (165)
T ss_dssp T
T ss_pred h
Confidence 3
No 255
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=27.72 E-value=67 Score=27.51 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=30.6
Q ss_pred CCccc--cEEEEEeecc----CCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQ--QHIAIFTTAS----LPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~--~rI~ivt~~~----~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|+.++ +++|+|.... .+...|+..-...+.+.|.+.| ++|.+..-
T Consensus 36 m~~~~~~~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~Lg-F~V~~~~d 86 (178)
T 2h54_A 36 IMDKSSRTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLG-YSVDVKKN 86 (178)
T ss_dssp CCCTTTCCCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTT-CEEEEEES
T ss_pred CCCCCCcCCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCC-CEEEEecC
Confidence 55433 5666665332 2456787777788889999998 99998743
No 256
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=27.67 E-value=2.1e+02 Score=25.89 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=21.0
Q ss_pred hcCee-EecCCCCCCchHHHHHHHcCCeEEeeCCC
Q 010098 301 DYKVF-LNPSTTDVVCTATAEALAMGKIVVCANHP 334 (518)
Q Consensus 301 ~adv~-v~pS~~E~~~~~~lEAma~G~PVV~t~~g 334 (518)
..|.+ +.|...+...-.+-++...|+|||+.+..
T Consensus 57 ~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~ 91 (306)
T 8abp_A 57 GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQ 91 (306)
T ss_dssp TCCEEEEECSCGGGHHHHHHHHHHTTCEEEEESSC
T ss_pred CCCEEEEeCCCchhhHHHHHHHHHCCCcEEEeCCC
Confidence 45644 44443333333356778899999999853
No 257
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=27.53 E-value=45 Score=26.30 Aligned_cols=38 Identities=13% Similarity=0.034 Sum_probs=27.4
Q ss_pred EEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 7 rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|++++.+.. |+.+-.+...+..+..+...+ |+|.|+-.
T Consensus 3 k~~~vv~~~-P~g~~~~~~al~~a~a~~a~~-~~v~vff~ 40 (119)
T 2d1p_B 3 RIAFVFSTA-PHGTAAGREGLDALLATSALT-DDLAVFFI 40 (119)
T ss_dssp CEEEEECSC-TTTSTHHHHHHHHHHHHHTTC-SCEEEEEC
T ss_pred EEEEEEcCC-CCCcHHHHHHHHHHHHHHhCC-CCEEEEEe
Confidence 578887765 775444455677777777777 99999865
No 258
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=27.45 E-value=48 Score=30.62 Aligned_cols=19 Identities=32% Similarity=0.279 Sum_probs=15.9
Q ss_pred HHHHHHHHhcCCeeEEEEec
Q 010098 27 LFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 27 ~~~a~~L~~~gg~~V~vi~~ 46 (518)
..+++.|.++| |+|++++-
T Consensus 14 ~~L~~~L~~~G-~~V~~l~R 32 (298)
T 4b4o_A 14 TALTQLLNARG-HEVTLVSR 32 (298)
T ss_dssp HHHHHHHHHTT-CEEEEEES
T ss_pred HHHHHHHHHCC-CEEEEEEC
Confidence 46778999998 99999865
No 259
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=27.17 E-value=1.1e+02 Score=26.33 Aligned_cols=99 Identities=7% Similarity=0.094 Sum_probs=57.6
Q ss_pred EEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHH---hhcCeeEec-CCCCCCchHHHHHHH---cCCeEEee-C
Q 010098 262 EMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIF---HDYKVFLNP-STTDVVCTATAEALA---MGKIVVCA-N 332 (518)
Q Consensus 262 ~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~---~~adv~v~p-S~~E~~~~~~lEAma---~G~PVV~t-~ 332 (518)
++.++.+.+. .+.+.......+ .+.... +..+.+ ...|+++.- ...+.-|..+++.+. ..+|||.. .
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~-~v~~~~---~~~~al~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~ 79 (220)
T 1p2f_A 4 KIAVVDDDKNILKKVSEKLQQLG-RVKTFL---TGEDFLNDEEAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILLTL 79 (220)
T ss_dssp EEEEECSCHHHHHHHHHHHTTTE-EEEEES---SHHHHHHCCSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEES
T ss_pred eEEEEeCCHHHHHHHHHHHHhCC-CEEEEC---CHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEEc
Confidence 4566665332 344555555545 333322 223232 356766653 233445667776664 46787665 3
Q ss_pred CCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhC
Q 010098 333 HPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 364 (518)
Q Consensus 333 ~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~ 364 (518)
... .+.+..|..+++.. +++++.++|..++..
T Consensus 80 ~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 80 LSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLER 117 (220)
T ss_dssp CCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 332 45556788888864 899999999988764
No 260
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=27.16 E-value=48 Score=33.25 Aligned_cols=36 Identities=11% Similarity=0.030 Sum_probs=26.2
Q ss_pred ccEEEEEeeccCCcccccccch-HHHHHHHHhc--CCeeEEEEec
Q 010098 5 QQHIAIFTTASLPWLTGTAVNP-LFRAAYLAKD--GERRVTLVIP 46 (518)
Q Consensus 5 ~~rI~ivt~~~~P~~~G~~~~~-~~~a~~L~~~--gg~~V~vi~~ 46 (518)
++||++++. .+.+-+++ +.+++.|+++ | |+||++++
T Consensus 9 ~~~vv~~p~-----p~~GHi~P~l~La~~L~~r~pG-~~Vt~v~t 47 (463)
T 2acv_A 9 NSELIFIPA-----PGIGHLASALEFAKLLTNHDKN-LYITVFCI 47 (463)
T ss_dssp CEEEEEECC-----SSTTTHHHHHHHHHHHHHTCTT-EEEEEEEC
T ss_pred CCEEEEEcC-----cccchHHHHHHHHHHHHhcCCC-cEEEEEEc
Confidence 468888843 23334444 6788999998 7 99999988
No 261
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=27.05 E-value=68 Score=27.36 Aligned_cols=45 Identities=13% Similarity=0.022 Sum_probs=31.8
Q ss_pred CCccccEEEEEeecc-------CCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQQHIAIFTTAS-------LPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~rI~ivt~~~-------~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|+.+++.+|+|.+.. ++...|+..-...+...+.+.| ++|.+..-
T Consensus 39 m~~~~rG~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~Lg-F~V~v~~d 90 (173)
T 2ql9_A 39 MNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLG-FDVIVYND 90 (173)
T ss_dssp CCSSEEEEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHT-EEEEEEES
T ss_pred cCCCCceEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCC-CEEEEEeC
Confidence 666666677776442 3445687777777888888888 99988843
No 262
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=26.99 E-value=1.9e+02 Score=25.58 Aligned_cols=105 Identities=7% Similarity=-0.038 Sum_probs=58.6
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecC-CCCCCchHHHHHHHc--CCeEEee-CC
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM--GKIVVCA-NH 333 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~--G~PVV~t-~~ 333 (518)
.+++|+.+.+. .+.++......+..+.......+..+.+. ..|+++.-- ..+.-|..+++.+.. ..|||.- ..
T Consensus 38 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt~~ 117 (249)
T 3q9s_A 38 QRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLTAR 117 (249)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEESC
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEECC
Confidence 46666665332 34455555555543333322222223332 246555432 233346666666653 4666654 33
Q ss_pred CC----ccccccCCcEEeeC--CHHHHHHHHHHHHhCC
Q 010098 334 PS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEE 365 (518)
Q Consensus 334 g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~~ 365 (518)
.. .+.+..|..+++.. +++++..+|..++...
T Consensus 118 ~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~ 155 (249)
T 3q9s_A 118 DTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQR 155 (249)
T ss_dssp CSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhc
Confidence 32 45566788888874 9999999999998754
No 263
>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*
Probab=26.80 E-value=4e+02 Score=25.65 Aligned_cols=75 Identities=12% Similarity=0.086 Sum_probs=49.0
Q ss_pred CCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCC--------------ChHHHHh--hcCeeEecCCCCCCchHHHHHH
Q 010098 259 AGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRD--------------HADPIFH--DYKVFLNPSTTDVVCTATAEAL 322 (518)
Q Consensus 259 ~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~--------------~~~~l~~--~adv~v~pS~~E~~~~~~lEAm 322 (518)
+.++++-+..|.+.+.+.+++++++.......... ...++.. .+|+.+.......-=...++|+
T Consensus 27 ~~~~vvaL~a~~n~~~l~~q~~~f~p~~v~v~~~~~~~~~l~~~~~G~~~l~el~~~~~~D~Vv~AivG~aGL~ptlaAi 106 (376)
T 3a06_A 27 KGIRLIGISFHSNLELAFKIVKEFNVKNVAITGDVEFEDSSINVWKGSHSIEEMLEALKPDITMVAVSGFSGLRAVLASL 106 (376)
T ss_dssp CSEEEEEEEESSCHHHHHHHHHHHTCCEEEECSSCCCCCSSSEEEESTTHHHHHHHHHCCSEEEECCCSTTHHHHHHHHH
T ss_pred CCeEEEEEEccCCHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHccCHHHHHHHhcCCCCCEEEEEeeCHHHHHHHHHHH
Confidence 45777666556778888888888887644333211 2245554 5788877754333334578899
Q ss_pred HcCCeEEeeCC
Q 010098 323 AMGKIVVCANH 333 (518)
Q Consensus 323 a~G~PVV~t~~ 333 (518)
-+|+-|...+-
T Consensus 107 ~aGK~vaLANK 117 (376)
T 3a06_A 107 EHSKRVCLANK 117 (376)
T ss_dssp HHCSEEEECCS
T ss_pred HCCCEEEEeCh
Confidence 99999999765
No 264
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=26.70 E-value=3.8e+02 Score=26.78 Aligned_cols=89 Identities=13% Similarity=0.093 Sum_probs=55.6
Q ss_pred cEEEEEeCCC---ChHHHHHHHHHcCCeEE-EeCCCCChHHHHhh--cCeeEecCCCCCCchHHHHHH--HcCCeEEeeC
Q 010098 261 LEMDLYGNGE---DFDQIQRAAKKLKLVVR-VYPGRDHADPIFHD--YKVFLNPSTTDVVCTATAEAL--AMGKIVVCAN 332 (518)
Q Consensus 261 ~~l~ivG~g~---~~~~l~~~~~~~~l~v~-~~~~~~~~~~l~~~--adv~v~pS~~E~~~~~~lEAm--a~G~PVV~t~ 332 (518)
-.+.|+|.-. +..+++.+.+++|+.+. .+.+-...+++-+. |++-|... ..++..+.+.| -+|+|.+...
T Consensus 204 ~~VNiiG~~~~~gd~~eik~lL~~~Gi~v~~~~~gg~~~~el~~~~~A~~niv~~--~~~~~~~A~~Le~~~GiP~i~~~ 281 (483)
T 3pdi_A 204 HDVNLIGEYNIAGEFWHVLPLLDELGLRVLCTLAGDARYREVQTMHRAEVNMMVC--SKAMLNVARKLQETYGTPWFEGS 281 (483)
T ss_dssp EEEEEESCCCBTTGGGGTHHHHHHHTEEEEEEETSSBCHHHHTTGGGCSEEEEES--CCTTHHHHHHHHHHHCCCEEEEC
T ss_pred CeEEEEcCCCChhHHHHHHHHHHHCCCcEEEECCCcCCHHHHHhhhcCCEEEEEc--hhhHHHHHHHHHHHhCCCEeecC
Confidence 4788888632 34778999999999876 45555566666554 45444332 12356677776 4799988642
Q ss_pred CCCccccccCCcEEeeCCHHHHHHHHHHHHh
Q 010098 333 HPSNDFFKQFPNCRTYDGRNGFVEATLKALA 363 (518)
Q Consensus 333 ~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~ 363 (518)
.-| .++.+++.++|.+++.
T Consensus 282 p~G------------i~~T~~~L~~ia~~~g 300 (483)
T 3pdi_A 282 FYG------------ITDTSQALRDFARLLD 300 (483)
T ss_dssp SSS------------HHHHHHHHHHHHHHTT
T ss_pred CCC------------HHHHHHHHHHHHHHhC
Confidence 101 1355677777777654
No 265
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=26.61 E-value=2.2e+02 Score=21.89 Aligned_cols=104 Identities=9% Similarity=0.028 Sum_probs=59.3
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCe-EEEeCCCCChHHHHh-------hcCeeEecC-CCCCCchHHHHHHHc----CC
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLV-VRVYPGRDHADPIFH-------DYKVFLNPS-TTDVVCTATAEALAM----GK 326 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~-v~~~~~~~~~~~l~~-------~adv~v~pS-~~E~~~~~~lEAma~----G~ 326 (518)
.++.++.+.+. .+.++...+..|.. +.......+.-+.+. ..|+.+.=- ..+.-|..+++.+.. ..
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~ 82 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTS 82 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCCS
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCCC
Confidence 45566665333 35555665655543 333332222223333 247666532 233456777777642 46
Q ss_pred eEEe-eCCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhC
Q 010098 327 IVVC-ANHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 364 (518)
Q Consensus 327 PVV~-t~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~ 364 (518)
|||. |.... .+.+..|..+++.. +.+++.++|.+++..
T Consensus 83 ~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 83 PIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA 127 (133)
T ss_dssp CEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 7664 44433 45566788888874 899999999998754
No 266
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=26.43 E-value=1.8e+02 Score=28.32 Aligned_cols=72 Identities=13% Similarity=0.154 Sum_probs=43.5
Q ss_pred hcCCcEEEEEeCCCChHHHHHHHHHcCCe-EEEeC-------C----------------------CCChHHHHhhcCeeE
Q 010098 257 ELAGLEMDLYGNGEDFDQIQRAAKKLKLV-VRVYP-------G----------------------RDHADPIFHDYKVFL 306 (518)
Q Consensus 257 ~~~~~~l~ivG~g~~~~~l~~~~~~~~l~-v~~~~-------~----------------------~~~~~~l~~~adv~v 306 (518)
...+.+++++|.|.--..+-+++...|.+ +.+.. + ..++.+.+..+|++|
T Consensus 189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlI 268 (388)
T 1vl6_A 189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFI 268 (388)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEE
T ss_pred CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEE
Confidence 44678888888876655555555555653 33211 1 223567888889998
Q ss_pred ecCCCCCCchHHHHHHHcCCeEE
Q 010098 307 NPSTTDVVCTATAEALAMGKIVV 329 (518)
Q Consensus 307 ~pS~~E~~~~~~lEAma~G~PVV 329 (518)
-.|..-.+.--+++.|+- .|||
T Consensus 269 G~Sap~l~t~emVk~Ma~-~pII 290 (388)
T 1vl6_A 269 GVSRGNILKPEWIKKMSR-KPVI 290 (388)
T ss_dssp ECSCSSCSCHHHHTTSCS-SCEE
T ss_pred EeCCCCccCHHHHHhcCC-CCEE
Confidence 887633355557777763 4444
No 267
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=25.99 E-value=1.9e+02 Score=29.03 Aligned_cols=70 Identities=9% Similarity=0.075 Sum_probs=47.8
Q ss_pred CCcEEEEEeCCCChHHHHHHHHHcCCe-EEEeCCCCChHHHHh--hcCeeEecCCCCCCchHHHHHHHcC------CeEE
Q 010098 259 AGLEMDLYGNGEDFDQIQRAAKKLKLV-VRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMG------KIVV 329 (518)
Q Consensus 259 ~~~~l~ivG~g~~~~~l~~~~~~~~l~-v~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G------~PVV 329 (518)
++++++-+-+ .+.+..++.+++++.. +.. +.+.+++++ ..|+.+..+....-.-.+.+|+..| ++|+
T Consensus 67 ~~~~lvav~d-~~~~~a~~~a~~~g~~~~~~---~~d~~ell~~~~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl 142 (479)
T 2nvw_A 67 SQFQIVALYN-PTLKSSLQTIEQLQLKHATG---FDSLESFAQYKDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLY 142 (479)
T ss_dssp TTEEEEEEEC-SCHHHHHHHHHHTTCTTCEE---ESCHHHHHHCTTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEE
T ss_pred CCeEEEEEEe-CCHHHHHHHHHHcCCCccee---eCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEE
Confidence 6788876654 4567778888888763 222 357788887 5787766654333344567899999 9999
Q ss_pred eeC
Q 010098 330 CAN 332 (518)
Q Consensus 330 ~t~ 332 (518)
|-.
T Consensus 143 ~EK 145 (479)
T 2nvw_A 143 VEW 145 (479)
T ss_dssp EES
T ss_pred EeC
Confidence 854
No 268
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=25.93 E-value=55 Score=32.22 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=25.5
Q ss_pred CCccccEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|+++++||+|++... ......+...+.| ++|+++.+
T Consensus 1 M~~~~k~l~Il~~~~---------~~~~i~~aa~~lG-~~vv~v~~ 36 (425)
T 3vot_A 1 MTKRNKNLAIICQNK---------HLPFIFEEAERLG-LKVTFFYN 36 (425)
T ss_dssp -CCCCCEEEEECCCT---------TCCHHHHHHHHTT-CEEEEEEE
T ss_pred CCCCCcEEEEECCCh---------hHHHHHHHHHHCC-CEEEEEEC
Confidence 899889999997532 1223456677787 99999976
No 269
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=25.92 E-value=1.4e+02 Score=24.85 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=41.1
Q ss_pred cCCHH--HHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHH-cCCeEEEeCCCC-ChHHHHhhcCeeEec
Q 010098 241 SKGYE--ELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKK-LKLVVRVYPGRD-HADPIFHDYKVFLNP 308 (518)
Q Consensus 241 ~Kg~~--~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~-~~l~v~~~~~~~-~~~~l~~~adv~v~p 308 (518)
.|+.+ ..++++... ...+.-+++-|++ +...+-+.+++ +|..+.+++... ...++.+.||-|+.-
T Consensus 91 k~~~Dv~laiD~~~~a--~~~d~~vLvSgD~-DF~plv~~lr~~~G~~V~v~g~~~~~s~~L~~~ad~fi~l 159 (165)
T 2qip_A 91 KGDWDVGITLDAIEIA--PDVDRVILVSGDG-DFSLLVERIQQRYNKKVTVYGVPRLTSQTLIDCADNFVAI 159 (165)
T ss_dssp SCCCHHHHHHHHHHHG--GGCSEEEEECCCG-GGHHHHHHHHHHHCCEEEEEECGGGSCHHHHHHSSEEEEC
T ss_pred CCCccHHHHHHHHHhh--ccCCEEEEEECCh-hHHHHHHHHHHHcCcEEEEEeCCCcChHHHHHhCCEEEec
Confidence 34544 667888653 3345655666665 45555555566 698888877543 345888899977743
No 270
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=25.85 E-value=3.4e+02 Score=23.81 Aligned_cols=62 Identities=11% Similarity=0.007 Sum_probs=34.8
Q ss_pred hcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHhCC
Q 010098 301 DYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEE 365 (518)
Q Consensus 301 ~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~ 365 (518)
..|.+|..+..+...-.+-++...|+|||..+....+. ....+..|+.+....+.+.+++..
T Consensus 58 ~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~---~~~~V~~d~~~~~~~a~~~L~~~G 119 (272)
T 3o74_A 58 RCDALFVASCLPPEDDSYRELQDKGLPVIAIDRRLDPA---HFCSVISDDRDASRQLAASLLSSA 119 (272)
T ss_dssp TCSEEEECCCCCSSCCHHHHHHHTTCCEEEESSCCCTT---TCEEEEECHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEecCccccHHHHHHHHHcCCCEEEEccCCCcc---ccCEEEEchHHHHHHHHHHHHHCC
Confidence 45644443322112334556677999999998753211 122333567777777777777653
No 271
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=25.83 E-value=3.5e+02 Score=24.42 Aligned_cols=63 Identities=11% Similarity=-0.145 Sum_probs=31.4
Q ss_pred hcCeeEe-cCCCCCCchHHHHHHHcCCeEEeeCCCCcccccc-CCcEEeeCCHHHHHHHHHHHHh
Q 010098 301 DYKVFLN-PSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQ-FPNCRTYDGRNGFVEATLKALA 363 (518)
Q Consensus 301 ~adv~v~-pS~~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~-~~~g~~~~d~~~l~~~i~~ll~ 363 (518)
..|.+|. |...+...-.+-++...|+|||+.+......-.. ....+..|+.+....+.+.+++
T Consensus 58 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~ 122 (306)
T 2vk2_A 58 GVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 122 (306)
T ss_dssp TCSEEEECCSSSSSCHHHHHHHHHTTCCEEEESSCCCCSCGGGSSEEEECCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCChhhHHHHHHHHHHCCCCEEEecCCCCCCCccceEEEEecCHHHHHHHHHHHHHH
Confidence 5675544 4333322223444556899999987643211000 1223334566655556566554
No 272
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=25.74 E-value=2.4e+02 Score=27.93 Aligned_cols=43 Identities=12% Similarity=0.207 Sum_probs=30.4
Q ss_pred CChHHHHhhcCeeEecCC-CCCCchHHHHHHHcCCeEEeeCCCC
Q 010098 293 DHADPIFHDYKVFLNPST-TDVVCTATAEALAMGKIVVCANHPS 335 (518)
Q Consensus 293 ~~~~~l~~~adv~v~pS~-~E~~~~~~lEAma~G~PVV~t~~g~ 335 (518)
.+.++++..+|+++..+- ...+.-..++.|.-|.-+|....+.
T Consensus 267 ~~Leeal~~ADIVi~atgt~~lI~~e~l~~MK~gailINvgrg~ 310 (435)
T 3gvp_A 267 VKLNEVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSN 310 (435)
T ss_dssp CCHHHHTTTCSEEEECSSCSCSBCHHHHHHSCTTEEEEECSSTT
T ss_pred ccHHHHHhcCCEEEECCCCcccCCHHHHHhcCCCcEEEEecCCC
Confidence 357789999999988643 2235557888888887776665554
No 273
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=25.66 E-value=1.1e+02 Score=28.92 Aligned_cols=69 Identities=17% Similarity=0.112 Sum_probs=44.1
Q ss_pred CCcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecCCCCCCchHHHHHHHcCCeEEeeC
Q 010098 259 AGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCAN 332 (518)
Q Consensus 259 ~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~ 332 (518)
++++++-+-+ .+.+..++.+++++. . ..+.+.+++++ ..|+.+..+....-.-.+.+|+..|++|++-.
T Consensus 27 ~~~~lvav~d-~~~~~~~~~a~~~~~-~---~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGkhVl~EK 97 (336)
T 2p2s_A 27 AGAELAGVFE-SDSDNRAKFTSLFPS-V---PFAASAEQLITDASIDLIACAVIPCDRAELALRTLDAGKDFFTAK 97 (336)
T ss_dssp TTCEEEEEEC-SCTTSCHHHHHHSTT-C---CBCSCHHHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred CCcEEEEEeC-CCHHHHHHHHHhcCC-C---cccCCHHHHhhCCCCCEEEEeCChhhHHHHHHHHHHCCCcEEEeC
Confidence 4788765554 334445566666642 1 13567888887 57866665544333445678999999999853
No 274
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=25.48 E-value=2.3e+02 Score=21.70 Aligned_cols=63 Identities=8% Similarity=-0.008 Sum_probs=40.9
Q ss_pred cCeeEecC-CCCCCchHHHHHHH---cCCeEEee-CCCC----ccccccCCcEEeeC--CHHHHHHHHHHHHhC
Q 010098 302 YKVFLNPS-TTDVVCTATAEALA---MGKIVVCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 364 (518)
Q Consensus 302 adv~v~pS-~~E~~~~~~lEAma---~G~PVV~t-~~g~----~e~i~~~~~g~~~~--d~~~l~~~i~~ll~~ 364 (518)
.|+++.-- ..+.-|..+++.+. ...|||.. .... .+.+..|..+++.. +++++.++|..++..
T Consensus 50 ~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 123 (133)
T 3b2n_A 50 PNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNG 123 (133)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC-
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 57666533 23344667777664 35777654 3333 45566788888874 899999999998754
No 275
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=25.45 E-value=2.5e+02 Score=25.26 Aligned_cols=64 Identities=8% Similarity=-0.140 Sum_probs=32.1
Q ss_pred hcCee-EecCCCCCCchHHHHHHHcCCeEEeeCCCCc--cccccCCcEEe-eCCHHHHHHHHHHHHhCC
Q 010098 301 DYKVF-LNPSTTDVVCTATAEALAMGKIVVCANHPSN--DFFKQFPNCRT-YDGRNGFVEATLKALAEE 365 (518)
Q Consensus 301 ~adv~-v~pS~~E~~~~~~lEAma~G~PVV~t~~g~~--e~i~~~~~g~~-~~d~~~l~~~i~~ll~~~ 365 (518)
..|.+ +.|...+...-.+-++. .|+|||+.+.... +--......++ .|+.+....+.+.+++.-
T Consensus 63 ~vdgiii~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g 130 (304)
T 3o1i_D 63 GANAIILGTVDPHAYEHNLKSWV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERH 130 (304)
T ss_dssp TCSEEEECCSSTTSSTTTHHHHT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEeCCChhHHHHHHHHHc-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhc
Confidence 45644 44544444344455566 9999999865431 10011112233 245555555555555543
No 276
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=25.05 E-value=91 Score=24.45 Aligned_cols=66 Identities=11% Similarity=0.076 Sum_probs=45.0
Q ss_pred CCcEEEEEeCCC-ChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeC
Q 010098 259 AGLEMDLYGNGE-DFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCAN 332 (518)
Q Consensus 259 ~~~~l~ivG~g~-~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~ 332 (518)
.+..+++.|.-. .++++++++..+|.. +.+.+. ...|.+|.....|.-+.++-.|...|+|||.-+
T Consensus 12 ~G~~~ViTG~l~~~R~e~k~~ie~~Ggk--v~~sVs------kkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~ 78 (113)
T 2cok_A 12 SNMKILTLGKLSRNKDEVKAMIEKLGGK--LTGTAN------KASLCISTKKEVEKMNKKMEEVKEANIRVVSED 78 (113)
T ss_dssp SSCEEEECSCCSSCHHHHHHHHHHTTCE--EESCST------TCSEEECCHHHHHHCCHHHHHHHHTTCCEECTH
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHCCCE--EcCccc------cCccEEEECCCCCCCChHHHHHHHCCCcEEeHH
Confidence 357888888743 478999999988864 334332 344555544222345789999999999998654
No 277
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=25.03 E-value=60 Score=29.54 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=55.6
Q ss_pred ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-hHHHHHHHHHcCCe---EEEeCCC--CChHHHHhhcCeeEecC-CCC
Q 010098 240 WSKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLV---VRVYPGR--DHADPIFHDYKVFLNPS-TTD 312 (518)
Q Consensus 240 ~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l~---v~~~~~~--~~~~~l~~~adv~v~pS-~~E 312 (518)
-.|=+..|..|+.-+..-...-++.++|.... ...+.+.+++-|.. .++.||. .....-++.=|++|... ..|
T Consensus 50 L~kT~~~L~~A~~~i~~i~~~~~vlfVgTk~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t~~f~~PdllvV~Dp~~d 129 (252)
T 3u5c_A 50 VGKTWEKLVLAARIIAAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSD 129 (252)
T ss_dssp HHHHHHHHHHHHHHHTTSSSGGGEEEEECSHHHHHHHHHHHHHSSCEEEESCCCTTSSSCTTSTTCCCCSEEEESCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEEEEeCCcHHHHHHHHHHHHhCCceecCcccCCcccChhhhhccCCceEEEeCCccc
Confidence 34445566666655543212356778887544 34566777776654 2245541 11112234456555543 233
Q ss_pred CCchHHHHHHHcCCeEEee-CCCC-cccc
Q 010098 313 VVCTATAEALAMGKIVVCA-NHPS-NDFF 339 (518)
Q Consensus 313 ~~~~~~lEAma~G~PVV~t-~~g~-~e~i 339 (518)
-.++.||.-.|+|||+- |..+ ++.+
T Consensus 130 --~~ai~EA~~l~IP~Ial~DTn~~p~~V 156 (252)
T 3u5c_A 130 --AQAIKEASYVNIPVIALTDLDSPSEFV 156 (252)
T ss_dssp --HHHHHHHHTTTCCEEEEECTTCCCTTC
T ss_pred --hHHHHHHHHcCCCEEEEEcCCCCcccC
Confidence 46789999999999986 5544 4443
No 278
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=24.95 E-value=79 Score=29.88 Aligned_cols=44 Identities=5% Similarity=-0.043 Sum_probs=33.0
Q ss_pred CCcc-ccEEEEEeecc--C---CcccccccchHHHHHHHHhcCCeeEEEEe
Q 010098 1 MDRK-QQHIAIFTTAS--L---PWLTGTAVNPLFRAAYLAKDGERRVTLVI 45 (518)
Q Consensus 1 M~~~-~~rI~ivt~~~--~---P~~~G~~~~~~~~a~~L~~~gg~~V~vi~ 45 (518)
|+.+ ++++|+|.+.. . +...|+..-...+.+.|.+.| ++|++..
T Consensus 55 m~~~~~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LG-F~V~~~~ 104 (316)
T 2fp3_A 55 MQSRFNRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELN-FTIFPYG 104 (316)
T ss_dssp CCCSSCSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTT-EEEEEEC
T ss_pred CCCCCCCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCC-CEEEEcc
Confidence 6666 78888887543 2 556787777778888899898 9998873
No 279
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}
Probab=24.95 E-value=2e+02 Score=27.81 Aligned_cols=75 Identities=17% Similarity=0.150 Sum_probs=42.8
Q ss_pred cEEEEEeCCCChHHHHHHHHHcCCeEEEeC----------CCCChHHHHhhcCeeEe--cCCCC----C---CchHHHHH
Q 010098 261 LEMDLYGNGEDFDQIQRAAKKLKLVVRVYP----------GRDHADPIFHDYKVFLN--PSTTD----V---VCTATAEA 321 (518)
Q Consensus 261 ~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~----------~~~~~~~l~~~adv~v~--pS~~E----~---~~~~~lEA 321 (518)
-++-|+|-|.--..+-+.++.+|.++..+. ...+.+++++.||++++ |...+ + +.-..++.
T Consensus 117 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~ 196 (380)
T 2o4c_A 117 RTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAA 196 (380)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHHSTTSCCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHT
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhhccCcccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHhh
Confidence 455555555444444444445555444321 24567789999997665 43333 2 44457777
Q ss_pred HHcCCeEEeeCCCC
Q 010098 322 LAMGKIVVCANHPS 335 (518)
Q Consensus 322 ma~G~PVV~t~~g~ 335 (518)
|--|.-+|-+..|+
T Consensus 197 mk~gailIN~sRG~ 210 (380)
T 2o4c_A 197 LRPGTWLVNASRGA 210 (380)
T ss_dssp SCTTEEEEECSCGG
T ss_pred CCCCcEEEECCCCc
Confidence 77777777665553
No 280
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=24.91 E-value=2.2e+02 Score=28.86 Aligned_cols=114 Identities=5% Similarity=0.043 Sum_probs=71.5
Q ss_pred ccCCHHHHHHHHHHH-HHh---c--CCcEEEEEeCCC----ChHHHHHHHHHcCCeEEEeCCC-----------------
Q 010098 240 WSKGYEELLGLLNIY-HKE---L--AGLEMDLYGNGE----DFDQIQRAAKKLKLVVRVYPGR----------------- 292 (518)
Q Consensus 240 ~~Kg~~~ll~a~~~l-~~~---~--~~~~l~ivG~g~----~~~~l~~~~~~~~l~v~~~~~~----------------- 292 (518)
...|.+..++++-+. ... . ..-++.|+|+-. +..+++.+.+..|+.+.++...
T Consensus 191 ~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNIlg~~~~~~gD~~eik~lL~~~Gi~v~~lpd~s~~ld~~~~~~~~~~~g 270 (519)
T 1qgu_B 191 HVTGWDNMFEGFAKTFTADYQGQPGKLPKLNLVTGFETYLGNFRVLKRMMEQMAVPCSLLSDPSEVLDTPADGHYRMYSG 270 (519)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEECCSCCCHHHHHHHHHHHHHHTCCEEESSCTTTTTSCCCSSCCCSCCC
T ss_pred hhHHHHHHHHHHHHHhhccccccCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCeEEEecCccccccCcccCcccccCC
Confidence 346777777776543 221 1 124567777632 2378899999999998865433
Q ss_pred -CChHHHHhhcCeeEecCCCCCCchHHHHHHHc--CCeEEeeCCC-CccccccCCcEEeeCCHHHHHHHHHHHHhCC
Q 010098 293 -DHADPIFHDYKVFLNPSTTDVVCTATAEALAM--GKIVVCANHP-SNDFFKQFPNCRTYDGRNGFVEATLKALAEE 365 (518)
Q Consensus 293 -~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~--G~PVV~t~~g-~~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~ 365 (518)
...+++-+..+.-++-......+..+.+.|.- |+|.+..+.+ |. ++.+++.++|.+++..+
T Consensus 271 g~~~~ei~~~~~A~~niv~~~~~~~~~A~~Le~r~GiP~i~~~~PiG~------------~~T~~~L~~la~~~g~~ 335 (519)
T 1qgu_B 271 GTTQQEMKEAPDAIDTLLLQPWQLLKSKKVVQEMWNQPATEVAIPLGL------------AATDELLMTVSQLSGKP 335 (519)
T ss_dssp CBCHHHHHHGGGEEEEEESSTTTCHHHHHHHHHTSCCCCCCCCCCBSH------------HHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHhhhcCCEEEEECHHHHHHHHHHHHHHcCCCeEecCCCcch------------HHHHHHHHHHHHHHCCC
Confidence 45666666555444443344456778888854 8999877553 21 24567777777777654
No 281
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=24.28 E-value=1.1e+02 Score=26.19 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=26.5
Q ss_pred cEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 6 ~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
+||++..+.. .| +.....+.+.|.+.| ++|.++.+
T Consensus 6 k~IllgvTGs----~a-a~k~~~ll~~L~~~g-~~V~vv~T 40 (175)
T 3qjg_A 6 ENVLICLCGS----VN-SINISHYIIELKSKF-DEVNVIAS 40 (175)
T ss_dssp CEEEEEECSS----GG-GGGHHHHHHHHTTTC-SEEEEEEC
T ss_pred CEEEEEEeCH----HH-HHHHHHHHHHHHHCC-CEEEEEEC
Confidence 6787777654 23 455677889999988 99999987
No 282
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=24.22 E-value=3e+02 Score=22.59 Aligned_cols=91 Identities=18% Similarity=0.181 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCeEEEeCCCCChH--HH----HhhcC-eeEecCCCCCCchHHHHHHH-cCCeEEeeCCC---Ccc----
Q 010098 273 DQIQRAAKKLKLVVRVYPGRDHAD--PI----FHDYK-VFLNPSTTDVVCTATAEALA-MGKIVVCANHP---SND---- 337 (518)
Q Consensus 273 ~~l~~~~~~~~l~v~~~~~~~~~~--~l----~~~ad-v~v~pS~~E~~~~~~lEAma-~G~PVV~t~~g---~~e---- 337 (518)
+.+++.++++|+.+.++-.-.+-+ +. ...+| +.++|.-+-..+..+.+|++ .++|+|=--.. .+|
T Consensus 34 ~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE~FRh 113 (146)
T 1h05_A 34 ALIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSVALRDACAELSAPLIEVHISNVHAREEFRR 113 (146)
T ss_dssp HHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCHHHHHHHHTCCSCEEEEESSCGGGSCGGGG
T ss_pred HHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccHHHHHHHHhCCCCEEEEEecCccccccccc
Confidence 455666677777766654322222 22 33455 88999877778999999975 57999876433 244
Q ss_pred --ccccCCcEEeeC-CHHHHHHHHHHHHh
Q 010098 338 --FFKQFPNCRTYD-GRNGFVEATLKALA 363 (518)
Q Consensus 338 --~i~~~~~g~~~~-d~~~l~~~i~~ll~ 363 (518)
++.+...|.+.. -.+...-+++.+++
T Consensus 114 ~S~~s~~a~GvI~G~G~~gY~lAl~~~~~ 142 (146)
T 1h05_A 114 HSYLSPIATGVIVGLGIQGYLLALRYLAE 142 (146)
T ss_dssp CCSSGGGSSEEEESSTTHHHHHHHHHHHH
T ss_pred ccccccceeEEEEecCHHHHHHHHHHHHH
Confidence 445556777775 66666666666553
No 283
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=23.96 E-value=2e+02 Score=24.48 Aligned_cols=107 Identities=7% Similarity=0.027 Sum_probs=59.0
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCC-eEEEeCCCCChHHHHh---------------hcCeeEecC-CCCCCchHHHHH
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKL-VVRVYPGRDHADPIFH---------------DYKVFLNPS-TTDVVCTATAEA 321 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l-~v~~~~~~~~~~~l~~---------------~adv~v~pS-~~E~~~~~~lEA 321 (518)
..+++|+-+.+. ...+..+.++.|. .+.......+..+++. ..|+++.-. ..+.-|..+++.
T Consensus 61 ~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~ 140 (206)
T 3mm4_A 61 GKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATRE 140 (206)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHHH
Confidence 356666665333 3455566666665 3444433333334443 356655532 344457777776
Q ss_pred HH-------cCCeEEee-CCC-C----ccccccCCcEEeeCCHHHHHHHHHHHHhCCC
Q 010098 322 LA-------MGKIVVCA-NHP-S----NDFFKQFPNCRTYDGRNGFVEATLKALAEEP 366 (518)
Q Consensus 322 ma-------~G~PVV~t-~~g-~----~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~~ 366 (518)
+. ..+|||.. ... . .+.+..|..+++....+++.++|.+++....
T Consensus 141 lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~~L~~~i~~~l~~~~ 198 (206)
T 3mm4_A 141 IRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLNQLANVIREIESKRH 198 (206)
T ss_dssp HHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCTTHHHHHHHHC----
T ss_pred HHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHHHHHHHHHHHHhhhH
Confidence 64 45777654 332 2 3455678888887533389999998876543
No 284
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=23.95 E-value=1e+02 Score=27.62 Aligned_cols=41 Identities=22% Similarity=0.155 Sum_probs=25.5
Q ss_pred CCccccEEEEEeeccC----C--cccccccchHHHH---HHHHhcCCeeEEEEec
Q 010098 1 MDRKQQHIAIFTTASL----P--WLTGTAVNPLFRA---AYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~rI~ivt~~~~----P--~~~G~~~~~~~~a---~~L~~~gg~~V~vi~~ 46 (518)
|.+ +||+|+.++.- . +.+| ....+++ ..|.+.| ++|+++++
T Consensus 1 m~m--~kvLivls~~~~~~~~~~~~~G--~~~~E~~~p~~vl~~ag-~~v~~~s~ 50 (243)
T 1rw7_A 1 MAP--KKVLLALTSYNDVFYSDGAKTG--VFVVEALHPFNTFRKEG-FEVDFVSE 50 (243)
T ss_dssp -CC--CEEEEECCCCCCBCSTTSCBCC--BCHHHHHHHHHHHHHTT-CEEEEECS
T ss_pred CCC--ceEEEEECCCCcccCCCCCCCc--cCHHHHHHHHHHHHHCC-CEEEEECC
Confidence 554 38999987421 1 1234 3444444 6677777 99999988
No 285
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.87 E-value=3.2e+02 Score=24.94 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=36.9
Q ss_pred ccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC---hHHHHHHHHHcC
Q 010098 229 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED---FDQIQRAAKKLK 283 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~---~~~l~~~~~~~~ 283 (518)
..+|++++.-.. -.-..++++++++++. ++.+.++|-|.+ .+.++++++..+
T Consensus 108 ~rIIlf~ds~~~-~~~~~l~~lak~lkk~--gI~v~vIgFG~~~~n~~kLe~l~~~~N 162 (268)
T 4b4t_W 108 QRIVAFVCSPIS-DSRDELIRLAKTLKKN--NVAVDIINFGEIEQNTELLDEFIAAVN 162 (268)
T ss_dssp EEEEEEECSCCS-SCHHHHHHHHHHHHHH--TEEEEEEEESSCCSSCCHHHHHHHHHC
T ss_pred eEEEEEECCCCC-CCHHHHHHHHHHHHHc--CCEEEEEEeCCCccchHHHHHHHHHhc
Confidence 457778776433 3667888888888877 688888877643 467778777654
No 286
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=23.73 E-value=88 Score=29.17 Aligned_cols=98 Identities=13% Similarity=0.171 Sum_probs=55.7
Q ss_pred ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-hHHHHHHHHHcCCe-E--EEeCCC-CCh-HHHHhhcCeeEecC-CCC
Q 010098 240 WSKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLV-V--RVYPGR-DHA-DPIFHDYKVFLNPS-TTD 312 (518)
Q Consensus 240 ~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l~-v--~~~~~~-~~~-~~l~~~adv~v~pS-~~E 312 (518)
-.|=+..|.+|+.-+..-...-++.++|.... ...+++.+++-|.. + +++|+. .+- ..-++.=|++|... ..|
T Consensus 51 L~kT~~~L~~A~~~i~~i~~~~~ILfVgTk~~aq~~V~k~A~~~g~~yv~~RWlgG~LTN~~t~~f~~PdlliV~Dp~~e 130 (295)
T 2zkq_b 51 LKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRAD 130 (295)
T ss_dssp HHHHHHHHHHHHHHHHHSSCGGGEEEEECSHHHHHHHHHHHHHHCCEEEESSCCCC-CCCTTCSSCCCCSEEEESCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHhCCceecceEecccccCcccccccCCCeEEEeCCCcc
Confidence 34445566666666552222356788887543 34566667766654 2 244542 111 12234456555443 233
Q ss_pred CCchHHHHHHHcCCeEEee-CCCC-cccc
Q 010098 313 VVCTATAEALAMGKIVVCA-NHPS-NDFF 339 (518)
Q Consensus 313 ~~~~~~lEAma~G~PVV~t-~~g~-~e~i 339 (518)
-..+.||.-.|+|||+- |..+ .+.+
T Consensus 131 --~~AI~EA~~lgIPvIalvDTn~dp~~V 157 (295)
T 2zkq_b 131 --HQPLTEASYVNLPTIALCNTDSPLRYV 157 (295)
T ss_dssp --HHHHHHHHHHTCCEEEEECTTCCCTTC
T ss_pred --hhHHHHHHHhCCCEEEEecCCCCcccC
Confidence 56899999999999988 5544 4443
No 287
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=23.68 E-value=1.9e+02 Score=28.46 Aligned_cols=70 Identities=7% Similarity=0.061 Sum_probs=47.7
Q ss_pred CCcEEEEEeCCCChHHHHHHHHHcCCe-EEEeCCCCChHHHHh--hcCeeEecCCCCCCchHHHHHHHcC------CeEE
Q 010098 259 AGLEMDLYGNGEDFDQIQRAAKKLKLV-VRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMG------KIVV 329 (518)
Q Consensus 259 ~~~~l~ivG~g~~~~~l~~~~~~~~l~-v~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G------~PVV 329 (518)
++++++-+-+ .+.+..++.+++++.. +.. +.+.++++. ..|+.+..+....-.-.+.+|+..| ++|+
T Consensus 48 ~~~~lvav~d-~~~~~~~~~a~~~g~~~~~~---~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl 123 (438)
T 3btv_A 48 SQFQITALYS-PKIETSIATIQRLKLSNATA---FPTLESFASSSTIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLF 123 (438)
T ss_dssp TTEEEEEEEC-SSHHHHHHHHHHTTCTTCEE---ESSHHHHHHCSSCSEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCeEEEEEEe-CCHHHHHHHHHHcCCCccee---eCCHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHCCCCcccceeEE
Confidence 6788776654 4566777888887763 222 357788887 5787776654333344567899999 9999
Q ss_pred eeC
Q 010098 330 CAN 332 (518)
Q Consensus 330 ~t~ 332 (518)
+-.
T Consensus 124 ~EK 126 (438)
T 3btv_A 124 VEW 126 (438)
T ss_dssp EES
T ss_pred ecC
Confidence 864
No 288
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=23.53 E-value=3e+02 Score=25.49 Aligned_cols=64 Identities=11% Similarity=0.055 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeC-CCCChHHHHhhcCeeEecCC
Q 010098 247 LLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLVVRVYP-GRDHADPIFHDYKVFLNPST 310 (518)
Q Consensus 247 ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~-~~~~~~~l~~~adv~v~pS~ 310 (518)
+++++++..-.....+.+++|.|.- -.-+..+....|..+.+.. ...+..+..+.||+.|...-
T Consensus 146 i~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg 211 (288)
T 1b0a_A 146 IVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVG 211 (288)
T ss_dssp HHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHHHHHCSEEEECSC
T ss_pred HHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHHHHhccCCEEEECCC
Confidence 3444433333345689999999864 4556666667787787765 45688899999999998754
No 289
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=23.46 E-value=97 Score=26.24 Aligned_cols=132 Identities=14% Similarity=0.123 Sum_probs=86.0
Q ss_pred ccEEEEEE-eecccCCHHHHHHHHHHHHHhcCCcEEEEEeC-CCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeE
Q 010098 229 TKGAYYIG-RMVWSKGYEELLGLLNIYHKELAGLEMDLYGN-GEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFL 306 (518)
Q Consensus 229 ~~~il~vG-r~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~-g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v 306 (518)
..+|+..| .+.-.|....+-+....|+++.-+++|-|--- |..+-.+.-+..+.+..-......+++.+-+..+|+.+
T Consensus 31 ~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMdeIN~df~~tDv~l 110 (186)
T 2bru_C 31 HSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFADTDTVL 110 (186)
T ss_dssp SEEEEECSBHHHHTTTHHHHHHHHHHHHHHCCEEEEEECSSSSSSSSTHHHHHHHHTCCTTTEEESCCCHHHHHHCSEEE
T ss_pred CeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceEEEEecCCCHHHHhhHHHHhcccccCCEEE
Confidence 34555555 35557778888888888888877777776211 33344444444444544222335578888899999654
Q ss_pred --------ecCCCC--C---CchHHHHHHHcCCeEEeeCC---C--C--ccccccCCcEEeeCCHHHHHHHHHH
Q 010098 307 --------NPSTTD--V---VCTATAEALAMGKIVVCANH---P--S--NDFFKQFPNCRTYDGRNGFVEATLK 360 (518)
Q Consensus 307 --------~pS~~E--~---~~~~~lEAma~G~PVV~t~~---g--~--~e~i~~~~~g~~~~d~~~l~~~i~~ 360 (518)
+|+-.| + +|++++|..-+..-+|.-+. | | ++++-...+..++.|..+..+.|..
T Consensus 111 VIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~~~~~l~~ 184 (186)
T 2bru_C 111 VIGANDTVNPAAQDDPKSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKENTHMLFGDAKASVDAILK 184 (186)
T ss_dssp ECBCGGGGCGGGTTSTTSSSTTCCCCCCTTSSEEEEECSSSCCSSCCCSCTTTBSSSEEEECSCHHHHHHHHHH
T ss_pred EeccccccCccccCCCCCCcCCCeeeccccCCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHHHHHHHHH
Confidence 454322 2 78889999888766666543 2 2 6777777778888898888777765
No 290
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=23.43 E-value=2.6e+02 Score=25.91 Aligned_cols=53 Identities=8% Similarity=-0.032 Sum_probs=39.6
Q ss_pred cCCcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeC-CCCChHHHHhhcCeeEecCC
Q 010098 258 LAGLEMDLYGNGED-FDQIQRAAKKLKLVVRVYP-GRDHADPIFHDYKVFLNPST 310 (518)
Q Consensus 258 ~~~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~-~~~~~~~l~~~adv~v~pS~ 310 (518)
...-+.+++|.|.- -..+-.+....|..+.+.. ...+..+..+.||+.|...-
T Consensus 159 l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg 213 (285)
T 3l07_A 159 TEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAVG 213 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHHTTCSEEEECCC
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHhcccCCEEEECCC
Confidence 34578999998763 5556666667788887765 45688899999999998753
No 291
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=23.16 E-value=2.7e+02 Score=25.77 Aligned_cols=63 Identities=13% Similarity=0.129 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeC-CCCChHHHHhhcCeeEecCC
Q 010098 248 LGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLVVRVYP-GRDHADPIFHDYKVFLNPST 310 (518)
Q Consensus 248 l~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~-~~~~~~~l~~~adv~v~pS~ 310 (518)
++++++..-....-+.+++|.+.- -..+-.+....|..+.+.. ...+..+..+.||++|...-
T Consensus 148 ~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~~~~~~ADIVI~Avg 212 (285)
T 3p2o_A 148 MKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAG 212 (285)
T ss_dssp HHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHTTCSEEEECSS
T ss_pred HHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHHHHhhcCCEEEECCC
Confidence 344433322334579999998663 4555666667788888765 45678899999999998753
No 292
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=23.15 E-value=3.1e+02 Score=25.43 Aligned_cols=35 Identities=11% Similarity=0.009 Sum_probs=20.3
Q ss_pred hcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCCC
Q 010098 301 DYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS 335 (518)
Q Consensus 301 ~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g~ 335 (518)
..|.+|.....+...-.+-++...|+|||+.+...
T Consensus 62 ~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~~ 96 (350)
T 3h75_A 62 KPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSPL 96 (350)
T ss_dssp CCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESCC
T ss_pred CCCEEEEeCchhhHHHHHHHHHhCCCcEEEEcCCC
Confidence 56755443322222223445567899999997753
No 293
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=23.01 E-value=36 Score=32.91 Aligned_cols=36 Identities=36% Similarity=0.503 Sum_probs=25.1
Q ss_pred CCccccEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 1 M~~~~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
|++++|||+|+.... | | ..++..|++.| |+|+++..
T Consensus 25 m~~~~mkI~VIGaG~--m--G-----~alA~~La~~G-~~V~l~~r 60 (356)
T 3k96_A 25 MEPFKHPIAILGAGS--W--G-----TALALVLARKG-QKVRLWSY 60 (356)
T ss_dssp --CCCSCEEEECCSH--H--H-----HHHHHHHHTTT-CCEEEECS
T ss_pred ccccCCeEEEECccH--H--H-----HHHHHHHHHCC-CeEEEEeC
Confidence 455558999997643 1 2 24778898888 99999865
No 294
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=22.95 E-value=1e+02 Score=24.01 Aligned_cols=80 Identities=11% Similarity=0.122 Sum_probs=46.7
Q ss_pred EEEEeCCCC-----hHHHHHHHHHcCCeEEE-eCCCCChHHHHhhcCeeEecCCCC-CCchHHHHHHHcCCeEEeeCCCC
Q 010098 263 MDLYGNGED-----FDQIQRAAKKLKLVVRV-YPGRDHADPIFHDYKVFLNPSTTD-VVCTATAEALAMGKIVVCANHPS 335 (518)
Q Consensus 263 l~ivG~g~~-----~~~l~~~~~~~~l~v~~-~~~~~~~~~l~~~adv~v~pS~~E-~~~~~~lEAma~G~PVV~t~~g~ 335 (518)
++++|.|-- ...+++.+++.|+.+.+ ..+..+.+..+..+|+++.+.... .+ -++||+.-. +
T Consensus 25 lvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~~~~~~DlIist~~l~~~~---------~~ipvi~v~-~- 93 (113)
T 1tvm_A 25 IVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTARVDRSF---------GDIPLVHGM-P- 93 (113)
T ss_dssp EEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTTSTTSCSEEEESSCCCCCS---------TTCCEECCH-H-
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhhccCCCCEEEECCcccccc---------CCCCEEEEe-e-
Confidence 455566654 36677788888887544 234555554567899888776433 11 156765421 1
Q ss_pred ccccccCCcEEee-CCHHHHHHHHHHHHh
Q 010098 336 NDFFKQFPNCRTY-DGRNGFVEATLKALA 363 (518)
Q Consensus 336 ~e~i~~~~~g~~~-~d~~~l~~~i~~ll~ 363 (518)
++. .|.+++.+.+.++++
T Consensus 94 ----------~l~~~d~~~i~~~i~~~l~ 112 (113)
T 1tvm_A 94 ----------FVSGVGIEALQNKILTILQ 112 (113)
T ss_dssp ----------HHHSSSHHHHHHHHHHHHH
T ss_pred ----------ccccCCHHHHHHHHHHHHh
Confidence 111 267788777777664
No 295
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=22.80 E-value=82 Score=27.64 Aligned_cols=75 Identities=12% Similarity=0.153 Sum_probs=49.0
Q ss_pred CcEEEEEe--CCC-C----hHHHHHHHHHcCCeEEEeC----CCCChHHHHhhcCeeEecCCCCC-----------CchH
Q 010098 260 GLEMDLYG--NGE-D----FDQIQRAAKKLKLVVRVYP----GRDHADPIFHDYKVFLNPSTTDV-----------VCTA 317 (518)
Q Consensus 260 ~~~l~ivG--~g~-~----~~~l~~~~~~~~l~v~~~~----~~~~~~~l~~~adv~v~pS~~E~-----------~~~~ 317 (518)
.-++.++. .+. + ...+++..+++|.++.... ..++..+.+..||..++|- .+. +--.
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~G-G~~~~l~~~L~~~gl~~~ 105 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTG-GNTFFLLQELKRTGADKL 105 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECC-SCHHHHHHHHHHHTHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECC-CCHHHHHHHHHHCChHHH
Confidence 35676764 331 1 2556677778888776652 2222337788999998885 332 2235
Q ss_pred HHHHHHcCCeEEeeCCCC
Q 010098 318 TAEALAMGKIVVCANHPS 335 (518)
Q Consensus 318 ~lEAma~G~PVV~t~~g~ 335 (518)
+-|+...|+|++.+..|.
T Consensus 106 l~~~~~~G~p~~G~sAGa 123 (206)
T 3l4e_A 106 ILEEIAAGKLYIGESAGA 123 (206)
T ss_dssp HHHHHHTTCEEEEETHHH
T ss_pred HHHHHHcCCeEEEECHHH
Confidence 778888999999998764
No 296
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=22.78 E-value=97 Score=25.07 Aligned_cols=37 Identities=24% Similarity=0.188 Sum_probs=25.1
Q ss_pred cccEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 4 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 4 ~~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
++++|++|..+.-|-.-| ..++++|.+.| ++|+.+.+
T Consensus 13 ~p~~IavIGaS~~~g~~G-----~~~~~~L~~~G-~~V~~vnp 49 (138)
T 1y81_A 13 EFRKIALVGASKNPAKYG-----NIILKDLLSKG-FEVLPVNP 49 (138)
T ss_dssp -CCEEEEETCCSCTTSHH-----HHHHHHHHHTT-CEEEEECT
T ss_pred CCCeEEEEeecCCCCCHH-----HHHHHHHHHCC-CEEEEeCC
Confidence 358999998765553333 35667788887 98777765
No 297
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=22.74 E-value=3e+02 Score=24.36 Aligned_cols=51 Identities=6% Similarity=0.097 Sum_probs=34.9
Q ss_pred CchHHHHHHHcCCeEEeeCC-CC-ccccccCCcEEeeCCHHHHHHHHHHHHhCCC
Q 010098 314 VCTATAEALAMGKIVVCANH-PS-NDFFKQFPNCRTYDGRNGFVEATLKALAEEP 366 (518)
Q Consensus 314 ~~~~~lEAma~G~PVV~t~~-g~-~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~~ 366 (518)
.-.-+-|+||+-.-.+.-.. .. ..++++. -+.+.|..++.+.+.++-.++.
T Consensus 266 it~rvwe~~as~av~~~d~~fd~~~~i~~~a--~fyv~nr~elid~in~~k~~~~ 318 (351)
T 1jg7_A 266 ITLRVWETMASDAVMLIDEEFDTKHRIINDA--RFYVNNRAELIDRVNELKHSDV 318 (351)
T ss_dssp CCHHHHHHHTSSSEEEEEGGGCTTCCSCSCG--GGEECSHHHHHHHHHHHHHCHH
T ss_pred ecHHHHHHHhhhhHhhhhcccCcccccccCc--eeEecCHHHHHHHHhhccchHH
Confidence 45668999998765444322 22 5555542 2667899999999999877654
No 298
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=22.68 E-value=4.1e+02 Score=23.62 Aligned_cols=62 Identities=24% Similarity=0.154 Sum_probs=31.8
Q ss_pred hcCeeE-ecCCCCCCchHHHHHHHcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHhC
Q 010098 301 DYKVFL-NPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAE 364 (518)
Q Consensus 301 ~adv~v-~pS~~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~~ 364 (518)
..|.+| .|...+...-.+-++...|+|||..+....+. .....+..||.+.-..+.+.+++.
T Consensus 57 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~V~~D~~~~g~~a~~~L~~~ 119 (283)
T 2ioy_A 57 KVDVLLINPVDSDAVVTAIKEANSKNIPVITIDRSANGG--DVVCHIASDNVKGGEMAAEFIAKA 119 (283)
T ss_dssp TCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCSSS--CCSEEEEECHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCchhhhHHHHHHHHHCCCeEEEecCCCCCc--ceeEEEecChHHHHHHHHHHHHHH
Confidence 456444 44433332223444557899999987642110 011223346666666666666654
No 299
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=22.66 E-value=91 Score=30.94 Aligned_cols=42 Identities=12% Similarity=0.230 Sum_probs=27.2
Q ss_pred CChHHHHhhcCeeEecCCC-CCCchHHHHHHHcCCeEEeeCCC
Q 010098 293 DHADPIFHDYKVFLNPSTT-DVVCTATAEALAMGKIVVCANHP 334 (518)
Q Consensus 293 ~~~~~l~~~adv~v~pS~~-E~~~~~~lEAma~G~PVV~t~~g 334 (518)
.+.+++++.+|+++..+.. ..+.-..++.|.-|.-+|....+
T Consensus 258 ~sL~eal~~ADVVilt~gt~~iI~~e~l~~MK~gAIVINvgRg 300 (436)
T 3h9u_A 258 LLVEDVVEEAHIFVTTTGNDDIITSEHFPRMRDDAIVCNIGHF 300 (436)
T ss_dssp CCHHHHTTTCSEEEECSSCSCSBCTTTGGGCCTTEEEEECSSS
T ss_pred cCHHHHHhhCCEEEECCCCcCccCHHHHhhcCCCcEEEEeCCC
Confidence 3677899999999875532 22444566677777656555444
No 300
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=22.65 E-value=3.5e+02 Score=25.48 Aligned_cols=110 Identities=19% Similarity=0.083 Sum_probs=0.0
Q ss_pred CCccccEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcc
Q 010098 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDR 80 (518)
Q Consensus 1 M~~~~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 80 (518)
|.++ |||+|+ |+........+.|.+.+ |+|..+.+ -|+.-.-..+-.....-... .
T Consensus 19 ~~~~-mrIvf~---------G~~~fa~~~L~~L~~~~-~~i~~Vvt----------~pd~~~~~~~v~~~A~~~gI---p 74 (329)
T 2bw0_A 19 YFQS-MKIAVI---------GQSLFGQEVYCHLRKEG-HEVVGVFT----------VPDKDGKADPLGLEAEKDGV---P 74 (329)
T ss_dssp --CC-CEEEEE---------CCHHHHHHHHHHHHHTT-CEEEEEEE----------CCCCSSCCCHHHHHHHHHTC---C
T ss_pred cCCC-CEEEEE---------cCcHHHHHHHHHHHHCC-CeEEEEEe----------CCCcCCCCCHHHHHHHHcCC---C
Q ss_pred cCCCCCCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcCCEEEEEe
Q 010098 81 TGFTSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVH 150 (518)
Q Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~v~~~h 150 (518)
+.. +.++...... ...+.+.++..+||++++-....+ + ...+......-+..+|
T Consensus 75 v~~---------~~~~~~~~~~---~~~~~~~l~~~~~Dliv~a~y~~i--l--p~~il~~~~~g~iNiH 128 (329)
T 2bw0_A 75 VFK---------YSRWRAKGQA---LPDVVAKYQALGAELNVLPFCSQF--I--PMEIISAPRHGSIIYH 128 (329)
T ss_dssp EEE---------CSCCEETTEE---CHHHHHHHHTTCCSEEEESSCSSC--C--CHHHHTCSTTCEEEEE
T ss_pred EEe---------cCcccccccc---cHHHHHHHHhcCCCEEEEeehhhh--C--CHHHHhhCcCCEEEEc
No 301
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=22.58 E-value=95 Score=26.98 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=27.2
Q ss_pred ccEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEec
Q 010098 5 QQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 46 (518)
Q Consensus 5 ~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~ 46 (518)
++||++..+.. .| +.....+.+.|.+.| ++|.++.+
T Consensus 8 ~k~IllgvTGs----~a-a~k~~~l~~~L~~~g-~~V~vv~T 43 (194)
T 1p3y_1 8 DKKLLIGICGS----IS-SVGISSYLLYFKSFF-KEIRVVMT 43 (194)
T ss_dssp GCEEEEEECSC----GG-GGGTHHHHHHHTTTS-SEEEEEEC
T ss_pred CCEEEEEEECH----HH-HHHHHHHHHHHHHCC-CEEEEEEc
Confidence 46888877754 22 456677889998887 99999977
No 302
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=22.57 E-value=1.3e+02 Score=26.55 Aligned_cols=42 Identities=12% Similarity=0.174 Sum_probs=29.4
Q ss_pred CChHHHH-hhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCCC
Q 010098 293 DHADPIF-HDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP 334 (518)
Q Consensus 293 ~~~~~l~-~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~g 334 (518)
++.++++ ..+|+.+..+..+..--.+.+++..|++||+...+
T Consensus 41 ~~~~~l~~~~~DvVv~~~~~~~~~~~~~~~l~~G~~vv~~~~~ 83 (236)
T 2dc1_A 41 RGIDEFLQREMDVAVEAASQQAVKDYAEKILKAGIDLIVLSTG 83 (236)
T ss_dssp SSHHHHTTSCCSEEEECSCHHHHHHHHHHHHHTTCEEEESCGG
T ss_pred CCHHHHhcCCCCEEEECCCHHHHHHHHHHHHHCCCcEEEECcc
Confidence 4666777 58897776654433334467889999999998653
No 303
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=22.45 E-value=4.3e+02 Score=23.86 Aligned_cols=61 Identities=23% Similarity=0.081 Sum_probs=30.9
Q ss_pred hcCeeE-ecCCCCCCchHHHHHHHcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHh
Q 010098 301 DYKVFL-NPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALA 363 (518)
Q Consensus 301 ~adv~v-~pS~~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~ 363 (518)
..|.+| .|...+...-.+-++...|+|||+.+....+. .....+..++.+....+.+.+++
T Consensus 57 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~V~~d~~~~g~~a~~~L~~ 118 (313)
T 2h3h_A 57 GVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTDSPDS--GRYVYIGTDNYQAGYTAGLIMKE 118 (313)
T ss_dssp TCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCTTS--CCSCEEECCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCChHHHHHHHHHHHHCCCeEEEeCCCCCCc--ceeEEECcCHHHHHHHHHHHHHH
Confidence 456444 44433333233445567899999987643210 11223334555554445555544
No 304
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=22.44 E-value=4.1e+02 Score=23.58 Aligned_cols=62 Identities=19% Similarity=0.130 Sum_probs=31.3
Q ss_pred hcCeeEe-cCCCCCCchHHHHHHHcCCeEEeeCCCCccccccCCcE-EeeCCHHHHHHHHHHHHhC
Q 010098 301 DYKVFLN-PSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNC-RTYDGRNGFVEATLKALAE 364 (518)
Q Consensus 301 ~adv~v~-pS~~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g-~~~~d~~~l~~~i~~ll~~ 364 (518)
..|.+|. |...+...-.+-++...|+|||+.+....+. +.... +..|+.+....+.+.+++.
T Consensus 58 ~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~~V~~D~~~~~~~~~~~L~~~ 121 (290)
T 2fn9_A 58 GYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGINAR--GLAVAQIYSDNYYGGVLAGEYFVKF 121 (290)
T ss_dssp TCSEEEECCSCTTTTHHHHHHHHHTTCCEEEESSCCSCS--SSSSEEEEECHHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCChHHHHHHHHHHHHCCCeEEEEecCCCCC--CceEEEEeCCHHHHHHHHHHHHHHH
Confidence 4564444 4333322223444556899999987643210 01223 4446665555555555543
No 305
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=22.15 E-value=3.7e+02 Score=23.93 Aligned_cols=44 Identities=14% Similarity=-0.058 Sum_probs=26.9
Q ss_pred HHHHcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHhCCC
Q 010098 320 EALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEEP 366 (518)
Q Consensus 320 EAma~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~~~~ 366 (518)
++...|+|||+.+..... .....+..|+.+....+.+.+++...
T Consensus 82 ~~~~~~iPvV~~~~~~~~---~~~~~V~~D~~~~g~~a~~~L~~~G~ 125 (291)
T 3egc_A 82 TELPKTFPIVAVNRELRI---PGCGAVLSENVRGARTAVEYLIARGH 125 (291)
T ss_dssp HSSCTTSCEEEESSCCCC---TTCEEEEECHHHHHHHHHHHHHHTTC
T ss_pred HhhccCCCEEEEecccCC---CCCCEEEECcHHHHHHHHHHHHHcCC
Confidence 344679999998775421 11233334677777777777776543
No 306
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=22.10 E-value=2.8e+02 Score=25.84 Aligned_cols=54 Identities=11% Similarity=0.052 Sum_probs=40.4
Q ss_pred cCCcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeC-CCCChHHHHhhcCeeEecCCC
Q 010098 258 LAGLEMDLYGNGED-FDQIQRAAKKLKLVVRVYP-GRDHADPIFHDYKVFLNPSTT 311 (518)
Q Consensus 258 ~~~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~-~~~~~~~l~~~adv~v~pS~~ 311 (518)
....+.+++|.|.- -..+..+....+-.+.+.. ...+..+..+.||+.|.....
T Consensus 163 l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg~ 218 (301)
T 1a4i_A 163 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQ 218 (301)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHHTTCSEEEECCCC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccHHHHhccCCEEEECCCC
Confidence 34679999999864 4555566666787788765 566888999999999987543
No 307
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=22.02 E-value=13 Score=21.36 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=19.7
Q ss_pred cEEEEEeCCCC-hHHHHHHHHHcCCeEEEeC
Q 010098 261 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYP 290 (518)
Q Consensus 261 ~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~ 290 (518)
++-+.+|+.++ ...+++.+++.++.+.|+|
T Consensus 5 vrtiwvggtpeelkklkeeakkanirvtfwg 35 (36)
T 2ki0_A 5 VRTIWVGGTPEELKKLKEEAKKANIRVTFWG 35 (36)
T ss_dssp CCCCCBCCCHHHHHHHHHHHHHHCCCCCBCC
T ss_pred eEEEEecCCHHHHHHHHHHHHhccEEEEeec
Confidence 44556666443 4566777788888777765
No 308
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=22.00 E-value=1.6e+02 Score=25.25 Aligned_cols=100 Identities=10% Similarity=0.090 Sum_probs=57.6
Q ss_pred EEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHh--hcCeeEecCCCCCCchHHHHHHHc---CCeEEee-CCCC
Q 010098 263 MDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAM---GKIVVCA-NHPS 335 (518)
Q Consensus 263 l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~---G~PVV~t-~~g~ 335 (518)
++++.+.+. .+.+....+..+..+.......+..+.+. ..|+.++|. .-|..+++.+.. .+|||.- ....
T Consensus 3 ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilp~---~~g~~~~~~lr~~~~~~~ii~lt~~~~ 79 (223)
T 2hqr_A 3 VLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVSD---KNALSFVSRIKEKHSSIVVLVSSDNPT 79 (223)
T ss_dssp EEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEEECC---TTHHHHHHHHHHHCTTSEEEEEESSCC
T ss_pred EEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcCCCCEEEeCC---CCHHHHHHHHHhCCCCCcEEEEECCCC
Confidence 445554332 34455555555655543333223333333 347777442 346666666543 6787655 3333
Q ss_pred ----ccccccCCcEEee--C-CHHHHHHHHHHHHhCC
Q 010098 336 ----NDFFKQFPNCRTY--D-GRNGFVEATLKALAEE 365 (518)
Q Consensus 336 ----~e~i~~~~~g~~~--~-d~~~l~~~i~~ll~~~ 365 (518)
.+.+..|..+++. - +++++..+|..++...
T Consensus 80 ~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 80 SEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp HHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 4555678888886 3 8899999999988654
No 309
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=21.90 E-value=3e+02 Score=25.47 Aligned_cols=52 Identities=8% Similarity=-0.052 Sum_probs=39.3
Q ss_pred CCcEEEEEeCCC-ChHHHHHHHHHcCCeEEEeCC-CCChHHHHhhcCeeEecCC
Q 010098 259 AGLEMDLYGNGE-DFDQIQRAAKKLKLVVRVYPG-RDHADPIFHDYKVFLNPST 310 (518)
Q Consensus 259 ~~~~l~ivG~g~-~~~~l~~~~~~~~l~v~~~~~-~~~~~~l~~~adv~v~pS~ 310 (518)
..-+.+++|.+. --..+-.+....|..+.+... ..+..+..+.||++|...-
T Consensus 160 ~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~~~~~~ADIVI~Avg 213 (286)
T 4a5o_A 160 YGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHVSRADLVVVAAG 213 (286)
T ss_dssp TTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHHTCSEEEECCC
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHHHHhccCCEEEECCC
Confidence 457999999765 345566666677888887664 6688899999999998753
No 310
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=21.90 E-value=2.5e+02 Score=27.18 Aligned_cols=76 Identities=16% Similarity=0.167 Sum_probs=51.2
Q ss_pred CcEEEEEeCCCChHHHHHHHHHcCCeEEEeC----------CCCChHHHHhhcCeeEe--cCCCC----C---CchHHHH
Q 010098 260 GLEMDLYGNGEDFDQIQRAAKKLKLVVRVYP----------GRDHADPIFHDYKVFLN--PSTTD----V---VCTATAE 320 (518)
Q Consensus 260 ~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~----------~~~~~~~l~~~adv~v~--pS~~E----~---~~~~~lE 320 (518)
+-++-|+|-|.--..+-+.++.+|.++..+. ...+.+++++.||+.++ |...+ + +.-..++
T Consensus 119 gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~ 198 (381)
T 3oet_A 119 DRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIR 198 (381)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHH
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHh
Confidence 4577888877666666666677777666542 23567799999996654 43334 2 4556777
Q ss_pred HHHcCCeEEeeCCCC
Q 010098 321 ALAMGKIVVCANHPS 335 (518)
Q Consensus 321 Ama~G~PVV~t~~g~ 335 (518)
.|--|.-+|-+..|+
T Consensus 199 ~mk~gailIN~aRG~ 213 (381)
T 3oet_A 199 RLKPGAILINACRGP 213 (381)
T ss_dssp HSCTTEEEEECSCGG
T ss_pred cCCCCcEEEECCCCc
Confidence 787787777776664
No 311
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=21.78 E-value=4e+02 Score=24.42 Aligned_cols=63 Identities=5% Similarity=0.027 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeC-CCCChHHHHhhcCeeEecC
Q 010098 242 KGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLVVRVYP-GRDHADPIFHDYKVFLNPS 309 (518)
Q Consensus 242 Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~-~~~~~~~l~~~adv~v~pS 309 (518)
+|+-.+++-.. ...-+.+++|.|.. -.-+-.+....|..+.+.. ...+..+..+.||++|...
T Consensus 137 ~gv~~lL~~~~-----l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~~~~~~ADIVI~Av 201 (276)
T 3ngx_A 137 RAVIDIMDYYG-----YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSMTRSSKIVVVAV 201 (276)
T ss_dssp HHHHHHHHHHT-----CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHHHSSEEEECS
T ss_pred HHHHHHHHHhC-----cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHHHhhccCCEEEECC
Confidence 34545554443 44689999998753 4555566666788888765 4668889999999999865
No 312
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}
Probab=21.63 E-value=3.6e+02 Score=25.35 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=31.7
Q ss_pred ChHHHHhhcCeeEe--cCCCCC---CchHHHHHHHcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHH
Q 010098 294 HADPIFHDYKVFLN--PSTTDV---VCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLK 360 (518)
Q Consensus 294 ~~~~l~~~adv~v~--pS~~E~---~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ 360 (518)
+.+++++.+|+.++ |...++ +.-..++.|--|.-+|-+..| .++ |.+++++++.+
T Consensus 191 ~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg--~~v----------d~~aL~~aL~~ 250 (331)
T 1xdw_A 191 SLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARG--QLV----------DTEAVIEAVES 250 (331)
T ss_dssp CHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCG--GGB----------CHHHHHHHHHH
T ss_pred CHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCc--ccc----------cHHHHHHHHHh
Confidence 67799999997665 333333 344566666555545444332 222 55667666654
No 313
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=21.47 E-value=2.8e+02 Score=26.37 Aligned_cols=56 Identities=18% Similarity=0.374 Sum_probs=33.4
Q ss_pred CChHHHHhhcCeeEe--cCCCCC---CchHHHHHHHcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHH
Q 010098 293 DHADPIFHDYKVFLN--PSTTDV---VCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLK 360 (518)
Q Consensus 293 ~~~~~l~~~adv~v~--pS~~E~---~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ 360 (518)
++.+++++.||+.++ |...|+ +.-..+..|--|.-+|-+..| +++ |.+++.+++..
T Consensus 219 ~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG--~~v----------de~aL~~aL~~ 279 (345)
T 4g2n_A 219 DTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRG--DLI----------NDDALIEALRS 279 (345)
T ss_dssp SSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCG--GGB----------CHHHHHHHHHH
T ss_pred CCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCC--chh----------CHHHHHHHHHh
Confidence 578899999996654 333333 455566666666555554432 222 56677666654
No 314
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=21.46 E-value=2.6e+02 Score=26.44 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=17.5
Q ss_pred HHhhcCCCCCcEEEEcCCchh
Q 010098 109 ITEIIPDEEADIAVLEEPEHL 129 (518)
Q Consensus 109 l~~~i~~~~~Dvi~~~~~~~~ 129 (518)
+.+++.+.++|+|++..|...
T Consensus 81 ~~~ll~~~~~D~V~i~tp~~~ 101 (350)
T 3rc1_A 81 YPALLERDDVDAVYVPLPAVL 101 (350)
T ss_dssp HHHHHTCTTCSEEEECCCGGG
T ss_pred HHHHhcCCCCCEEEECCCcHH
Confidence 778888888999999888665
No 315
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=21.42 E-value=1.4e+02 Score=26.82 Aligned_cols=98 Identities=10% Similarity=0.017 Sum_probs=53.7
Q ss_pred cCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-hHHHHHHHHHcCCe-E---EEeCCCC-Ch-HHHHhhcCeeEecCCCCC
Q 010098 241 SKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLV-V---RVYPGRD-HA-DPIFHDYKVFLNPSTTDV 313 (518)
Q Consensus 241 ~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l~-v---~~~~~~~-~~-~~l~~~adv~v~pS~~E~ 313 (518)
.|=+..|.+|+.-+..-...-++.++|.... ...+++.+++-|.. + ++.||.- +- ...+..=|+++..... .
T Consensus 47 ~kT~~~L~~A~~~i~~i~~~~~iLfVgtk~~~~~~V~~~A~~~g~~yv~~~RWlgG~LTN~~t~~~~~PdlliV~Dp~-~ 125 (241)
T 2xzm_B 47 EETWQKIKLAARVIAAVQHPEDVMVVCSRIYGQRAAIKFAGYTHCKSTSSSRWTPGTLTNYQTLKYEEPRVLIVTDPR-S 125 (241)
T ss_dssp HHHHHHHHHHHHHHHHCSSGGGEEEECCSHHHHHHHHHHHHHHTCBCCCCSSCCTTTTTCTTCTTCCCCSEEEESCTT-T
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHhCCEEeccccccCCcccCccccccCCCCEEEEECCC-c
Confidence 3445566666655554212356778887443 24455666655543 3 3555421 11 1223344655544322 1
Q ss_pred CchHHHHHHHcCCeEEee-CCCC-cccc
Q 010098 314 VCTATAEALAMGKIVVCA-NHPS-NDFF 339 (518)
Q Consensus 314 ~~~~~lEAma~G~PVV~t-~~g~-~e~i 339 (518)
--..+.||.-.|+|||+- |..+ ++.+
T Consensus 126 e~~ai~EA~~l~IPvIalvDTn~~p~~V 153 (241)
T 2xzm_B 126 DFQAIKEASYVNIPVIALCDSDSPLAYV 153 (241)
T ss_dssp THHHHHHHTTTTCCEEECCCSSSCCTTC
T ss_pred chHHHHHHHHhCCCEEEEecCCCCcccc
Confidence 246899999999999998 4434 4433
No 316
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=21.34 E-value=3.3e+02 Score=25.88 Aligned_cols=55 Identities=5% Similarity=0.149 Sum_probs=33.6
Q ss_pred ChHHHHhhcCeeEe--cCCCCC---CchHHHHHHHcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHH
Q 010098 294 HADPIFHDYKVFLN--PSTTDV---VCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLK 360 (518)
Q Consensus 294 ~~~~l~~~adv~v~--pS~~E~---~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ 360 (518)
+.+++++.||+.++ |...++ +.-..+..|--|.-+|-+..|+ ++ |.+++++++..
T Consensus 193 ~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~--~v----------d~~aL~~aL~~ 252 (343)
T 2yq5_A 193 DFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGE--LV----------DTGALIKALQD 252 (343)
T ss_dssp CHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGG--GB----------CHHHHHHHHHH
T ss_pred CHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCCh--hh----------hHHHHHHHHHc
Confidence 77899999997654 433333 4556677776676666654432 22 55666666643
No 317
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=21.19 E-value=1e+02 Score=25.07 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=29.8
Q ss_pred HHHHHHhcCCcEEEEEeCCCC----hHHHHHHHHHcCCeEEEeC
Q 010098 251 LNIYHKELAGLEMDLYGNGED----FDQIQRAAKKLKLVVRVYP 290 (518)
Q Consensus 251 ~~~l~~~~~~~~l~ivG~g~~----~~~l~~~~~~~~l~v~~~~ 290 (518)
+..+....|...++|+|.|.. ..++++..++.|+.+.+..
T Consensus 58 l~~l~~~~p~pevliiGTG~~~~~l~p~l~~~l~~~GI~vE~M~ 101 (135)
T 2fvt_A 58 LQRVFDNANAIDTLIVGTGADVWIAPRQLREALRGVNVVLDTMQ 101 (135)
T ss_dssp THHHHHTTTSCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEEC
T ss_pred HHHHHhcCCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCEEEEeC
Confidence 334445566789999999876 3788888888998887754
No 318
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=21.16 E-value=2.5e+02 Score=26.39 Aligned_cols=111 Identities=15% Similarity=0.071 Sum_probs=0.0
Q ss_pred CCccccEEEEEeeccCCcccccccchHHHHHHHHhcCCeeEEEEeccCCcccccccCCCCcccCChhHHHHHHHHhhhcc
Q 010098 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDR 80 (518)
Q Consensus 1 M~~~~~rI~ivt~~~~P~~~G~~~~~~~~a~~L~~~gg~~V~vi~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 80 (518)
|.++ |||+|+ |+......-.+.|.+.+ |+|..+.+ -|+.-.-.........+..+ ..
T Consensus 4 m~~~-mrivf~---------Gt~~fa~~~L~~L~~~~-~~v~~Vvt----------~pd~p~grg~~~~~~~v~~~--A~ 60 (318)
T 3q0i_A 4 MSQS-LRIVFA---------GTPDFAARHLAALLSSE-HEIIAVYT----------QPERPAGRGKKLTASPVKTL--AL 60 (318)
T ss_dssp ---C-CEEEEE---------CCSHHHHHHHHHHHTSS-SEEEEEEC----------CCC---------CCCHHHHH--HH
T ss_pred cccC-CEEEEE---------ecCHHHHHHHHHHHHCC-CcEEEEEc----------CCCCcccccccCCCCHHHHH--HH
Q ss_pred cCCCCCCcccccCcccccccccccchhhHHhhcCCCCCcEEEEcCCchhhhhhchHHHHhhcCCEEEEEe
Q 010098 81 TGFTSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVH 150 (518)
Q Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~l~~~i~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~v~~~h 150 (518)
-.-.+-+....+.. ..+.+.+++.+||++++-..... + ...+......-+..+|
T Consensus 61 ~~gIpv~~~~~~~~------------~~~~~~l~~~~~Dliv~~~y~~i--l--p~~~l~~~~~g~iNiH 114 (318)
T 3q0i_A 61 EHNVPVYQPENFKS------------DESKQQLAALNADLMVVVAYGLL--L--PKVVLDTPKLGCINVH 114 (318)
T ss_dssp HTTCCEECCSCSCS------------HHHHHHHHTTCCSEEEESSCCSC--C--CHHHHTSSTTCEEEEE
T ss_pred HcCCCEEccCcCCC------------HHHHHHHHhcCCCEEEEeCcccc--C--CHHHHhhCcCCEEEeC
No 319
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Probab=21.11 E-value=4.2e+02 Score=26.37 Aligned_cols=43 Identities=14% Similarity=0.061 Sum_probs=29.8
Q ss_pred CChHHHHhhcCeeEecCCC-CCCchHHHHHHHcCCeEEeeCCCC
Q 010098 293 DHADPIFHDYKVFLNPSTT-DVVCTATAEALAMGKIVVCANHPS 335 (518)
Q Consensus 293 ~~~~~l~~~adv~v~pS~~-E~~~~~~lEAma~G~PVV~t~~g~ 335 (518)
.+.+++++.+|+++..+-. ..+.-..++.|--|.-+|-+..+.
T Consensus 294 v~LeElL~~ADIVv~atgt~~lI~~e~l~~MK~GAILINvGRgd 337 (464)
T 3n58_A 294 VTLDDAASTADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFD 337 (464)
T ss_dssp CCHHHHGGGCSEEEECCSSSSSBCHHHHHHSCTTEEEEECSSST
T ss_pred ccHHHHHhhCCEEEECCCCccccCHHHHhcCCCCeEEEEcCCCC
Confidence 3567899999998876432 234566778887787777665543
No 320
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=21.09 E-value=3.7e+02 Score=25.58 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=35.1
Q ss_pred CChHHHHhhcCeeEe--cCCCCC---CchHHHHHHHcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHH
Q 010098 293 DHADPIFHDYKVFLN--PSTTDV---VCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLK 360 (518)
Q Consensus 293 ~~~~~l~~~adv~v~--pS~~E~---~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ 360 (518)
++.+++++.||+.++ |...++ +.-..++.|--|.-+|-+..|+ ++ |.+++++++.+
T Consensus 212 ~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~--~v----------de~aL~~aL~~ 272 (351)
T 3jtm_A 212 EDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGA--IM----------ERQAVVDAVES 272 (351)
T ss_dssp SCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGG--GB----------CHHHHHHHHHH
T ss_pred CCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCch--hh----------CHHHHHHHHHh
Confidence 678899999997664 333333 4556777776666666554432 22 56677776654
No 321
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=21.09 E-value=4.2e+02 Score=23.18 Aligned_cols=60 Identities=12% Similarity=-0.017 Sum_probs=33.2
Q ss_pred cCeeEecC-CCCCCchHHHHHHHcCCeEEeeCCCCccccccCCcEEe-eCCHHHHHHHHHHHHhC
Q 010098 302 YKVFLNPS-TTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRT-YDGRNGFVEATLKALAE 364 (518)
Q Consensus 302 adv~v~pS-~~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~-~~d~~~l~~~i~~ll~~ 364 (518)
.|.+|... ..+...-.+-++...|+|||..+..... .....++ .++.+....+.+.+++.
T Consensus 60 vdgii~~~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~---~~~~~~V~~d~~~~g~~~~~~l~~~ 121 (276)
T 3ksm_A 60 PDALILAPNSAEDLTPSVAQYRARNIPVLVVDSDLAG---DAHQGLVATDNYAAGQLAARALLAT 121 (276)
T ss_dssp CSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCSS---SCSSEEEECCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHCCCcEEEEecCCCC---CCcceEEccCHHHHHHHHHHHHHHh
Confidence 67555443 3344444555667789999999765321 1112333 45555555555555554
No 322
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=21.04 E-value=1.6e+02 Score=25.60 Aligned_cols=61 Identities=13% Similarity=-0.007 Sum_probs=40.4
Q ss_pred CcEEEEEeCCCChHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 260 GLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 260 ~~~l~ivG~g~~~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
+.++.+-|- ..+++++.++.+|..+ .. +. ..+.-+|.+... -..+++.|+++|+|||..+.
T Consensus 12 ~~~v~~sG~--~~~~~~~~i~~lGg~~--~~---~~----~~~THlI~~~~~--rt~K~l~a~~~g~~IV~~~W 72 (209)
T 2etx_A 12 APKVLFTGV--VDARGERAVLALGGSL--AG---SA----AEASHLVTDRIR--RTVKFLCALGRGIPILSLDW 72 (209)
T ss_dssp CCEEEECSS--CCHHHHHHHHHTTCEE--CS---ST----TTCSEEECSSCC--CSHHHHHHHHHTCCEECTHH
T ss_pred CcEEEEeCC--CcHHHHHHHHHCCCEE--eC---CC----CCceEEEECCCC--CCHHHHHHHhcCCccccHHH
Confidence 466666554 3455688888888642 22 22 236667776422 25789999999999998865
No 323
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}
Probab=20.56 E-value=3e+02 Score=25.38 Aligned_cols=87 Identities=14% Similarity=0.178 Sum_probs=45.9
Q ss_pred EEEEEeCCCChHHHHHHHHHcCCeEEEeC----------CCCChHHHHhhcCeeEe--cCCCCC---CchHHHHHHHcCC
Q 010098 262 EMDLYGNGEDFDQIQRAAKKLKLVVRVYP----------GRDHADPIFHDYKVFLN--PSTTDV---VCTATAEALAMGK 326 (518)
Q Consensus 262 ~l~ivG~g~~~~~l~~~~~~~~l~v~~~~----------~~~~~~~l~~~adv~v~--pS~~E~---~~~~~lEAma~G~ 326 (518)
++-|+|-|.--..+-..++..|.++..+. ..++.+++++.||+.++ |...++ +.-..++.|--|.
T Consensus 124 tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga 203 (290)
T 3gvx_A 124 ALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNL 203 (290)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTCSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTC
T ss_pred hheeeccCchhHHHHHHHHhhCcEEEEEeccccccccccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCc
Confidence 44444544433334344444444443322 23467799999997664 433333 4445566665565
Q ss_pred eEEeeCCCCccccccCCcEEeeCCHHHHHHHHHH
Q 010098 327 IVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLK 360 (518)
Q Consensus 327 PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ 360 (518)
-+|-+..|+ ++ |.+++++++.+
T Consensus 204 ilIN~aRG~--~v----------d~~aL~~aL~~ 225 (290)
T 3gvx_A 204 TIVNVARAD--VV----------SKPDMIGFLKE 225 (290)
T ss_dssp EEEECSCGG--GB----------CHHHHHHHHHH
T ss_pred eEEEeehhc--cc----------CCcchhhhhhh
Confidence 555443321 11 66777777765
No 324
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=20.55 E-value=1.4e+02 Score=26.39 Aligned_cols=63 Identities=13% Similarity=-0.007 Sum_probs=41.9
Q ss_pred CcEEEEEeCCCC-hHHHHHHHHHcCCeEEEeCCCCChHHHHhhcCeeEecCCCCCCchHHHHHHHcCCeEEeeCC
Q 010098 260 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 333 (518)
Q Consensus 260 ~~~l~ivG~g~~-~~~l~~~~~~~~l~v~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVV~t~~ 333 (518)
..++.+-|-.+. .+.+.+.++.+|..+ . ++ ...+.-+|.+... -..+++.|++.|+|||..+.
T Consensus 16 ~~~i~~SG~~~~~~~~l~~~i~~lGg~v--~---~~----~~~~THLI~~~~~--rT~K~l~A~~~g~~IVs~~W 79 (219)
T 3sqd_A 16 TPFVLFTGFEPVQVQQYIKKLYILGGEV--A---ES----AQKCTHLIASKVT--RTVKFLTAISVVKHIVTPEW 79 (219)
T ss_dssp CCEEEECSCCHHHHHHHHHHHHHTTCEE--C---SS----GGGCSEEECSSCC--CCHHHHHHTTTCSEEECHHH
T ss_pred CeEEEEeCCChHHHHHHHHHHHHCCCEE--e---CC----CCCceEEEECCCC--CCHHHHHHHHcCCCEecHHH
Confidence 355555554322 356788888888643 1 22 2678888877521 23589999999999999865
No 325
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=20.35 E-value=4.4e+02 Score=23.16 Aligned_cols=62 Identities=19% Similarity=0.094 Sum_probs=31.5
Q ss_pred hcCeeE-ecCCCCCCchHHHHHHHcCCeEEeeCCCCccccccCCcEEeeCCHHHHHHHHHHHHhC
Q 010098 301 DYKVFL-NPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAE 364 (518)
Q Consensus 301 ~adv~v-~pS~~E~~~~~~lEAma~G~PVV~t~~g~~e~i~~~~~g~~~~d~~~l~~~i~~ll~~ 364 (518)
..|.+| .|...+...-.+-++...|+|||..+...... +....+..||.+.-..+.+.+++.
T Consensus 57 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~i~~~~~~~--~~~~~V~~D~~~~g~~a~~~L~~~ 119 (271)
T 2dri_A 57 GTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG--EVVSHIASDNVLGGKIAGDYIAKK 119 (271)
T ss_dssp TEEEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCSSS--CCSEEEEECHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCChHHHHHHHHHHHHCCCcEEEecCCCCCC--ceeEEEecChHHHHHHHHHHHHHH
Confidence 345444 44433322223445566899999987643110 001233346666666666666553
No 326
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=20.09 E-value=2.9e+02 Score=20.96 Aligned_cols=59 Identities=10% Similarity=0.030 Sum_probs=40.5
Q ss_pred ccEEEEEEeecccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCChHHHHHHHHHcCCeEEE
Q 010098 229 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRV 288 (518)
Q Consensus 229 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~v~~ 288 (518)
+++++++. ..+...-......+.++.++++++.++.+....+.+.+++.+++.++...+
T Consensus 25 k~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 83 (136)
T 1lu4_A 25 KPAVLWFW-TPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTN 83 (136)
T ss_dssp SCEEEEEE-CTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEE
T ss_pred CEEEEEEE-CCcChhHHHHHHHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceE
Confidence 45555544 234444556667777777777788888887766688899999888876443
Done!