Query 010099
Match_columns 518
No_of_seqs 321 out of 1392
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 21:02:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010099.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010099hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02769 Probable galacturonos 100.0 3E-142 6E-147 1148.8 42.5 506 12-517 120-629 (629)
2 PLN02910 polygalacturonate 4-a 100.0 3E-137 8E-142 1100.6 36.0 481 35-517 160-656 (657)
3 PLN02829 Probable galacturonos 100.0 4E-130 9E-135 1047.8 37.8 453 64-518 176-639 (639)
4 PLN02742 Probable galacturonos 100.0 1E-123 3E-128 989.2 39.5 451 65-517 68-534 (534)
5 PLN02718 Probable galacturonos 100.0 5E-118 1E-122 957.0 37.8 433 66-517 160-602 (603)
6 PLN02523 galacturonosyltransfe 100.0 4E-106 9E-111 856.0 38.5 447 70-518 81-559 (559)
7 PLN02870 Probable galacturonos 100.0 8E-107 2E-111 859.2 30.4 411 98-517 90-531 (533)
8 PLN02867 Probable galacturonos 100.0 9E-106 2E-110 854.2 30.0 413 105-517 93-534 (535)
9 PLN02659 Probable galacturonos 100.0 3E-105 6E-110 847.8 31.2 395 116-517 107-532 (534)
10 cd06429 GT8_like_1 GT8_like_1 100.0 5.9E-55 1.3E-59 437.0 23.5 255 221-505 1-257 (257)
11 PRK15171 lipopolysaccharide 1, 100.0 6.6E-45 1.4E-49 377.2 20.9 258 218-509 23-291 (334)
12 cd06431 GT8_LARGE_C LARGE cata 100.0 1.7E-42 3.8E-47 351.1 22.3 256 223-513 5-277 (280)
13 cd00505 Glyco_transf_8 Members 100.0 3.3E-41 7.2E-46 334.4 20.8 237 221-489 1-245 (246)
14 cd04194 GT8_A4GalT_like A4GalT 100.0 6.8E-40 1.5E-44 324.4 18.8 236 221-489 1-247 (248)
15 COG1442 RfaJ Lipopolysaccharid 100.0 8.8E-40 1.9E-44 335.8 19.7 255 220-508 2-265 (325)
16 PF01501 Glyco_transf_8: Glyco 100.0 1.5E-35 3.3E-40 288.2 13.8 243 222-491 1-249 (250)
17 cd06430 GT8_like_2 GT8_like_2 100.0 1.4E-33 3.1E-38 287.2 20.6 254 221-511 1-281 (304)
18 cd06432 GT8_HUGT1_C_like The C 100.0 1E-33 2.2E-38 282.5 16.8 225 221-484 1-240 (248)
19 cd02537 GT8_Glycogenin Glycoge 99.9 5.2E-26 1.1E-30 225.6 18.9 221 222-505 2-238 (240)
20 PLN00176 galactinol synthase 99.9 6.2E-25 1.3E-29 226.9 18.9 169 327-507 100-294 (333)
21 cd06914 GT8_GNT1 GNT1 is a fun 99.8 8.1E-19 1.8E-23 177.7 16.7 141 323-492 76-242 (278)
22 KOG1879 UDP-glucose:glycoprote 99.2 6.7E-11 1.5E-15 135.8 10.3 245 217-505 1178-1444(1470)
23 COG5597 Alpha-N-acetylglucosam 97.8 1.3E-05 2.8E-10 81.7 3.8 154 329-501 157-352 (368)
24 PF03407 Nucleotid_trans: Nucl 96.9 0.0071 1.5E-07 58.5 10.2 144 324-484 48-202 (212)
25 PLN03182 xyloglucan 6-xylosylt 93.1 0.69 1.5E-05 49.8 10.5 166 321-501 179-375 (429)
26 PF11051 Mannosyl_trans3: Mann 90.9 1.1 2.5E-05 45.6 8.9 31 334-364 84-114 (271)
27 PF05637 Glyco_transf_34: gala 90.9 0.16 3.6E-06 50.9 2.7 140 339-483 75-231 (239)
28 PLN03181 glycosyltransferase; 82.5 2 4.4E-05 46.4 5.2 34 322-356 181-214 (453)
29 KOG1928 Alpha-1,4-N-acetylgluc 64.4 3.5 7.6E-05 44.1 1.5 32 327-362 228-259 (409)
30 cd02514 GT13_GLCNAC-TI GT13_GL 63.1 42 0.00091 35.6 9.2 115 221-362 2-119 (334)
31 PF03071 GNT-I: GNT-I family; 62.9 49 0.0011 36.3 9.9 118 218-362 92-213 (434)
32 PF10819 DUF2564: Protein of u 62.7 22 0.00047 29.9 5.5 69 101-169 6-77 (79)
33 cd02515 Glyco_transf_6 Glycosy 60.7 1.2E+02 0.0026 31.3 11.6 112 337-460 120-246 (271)
34 KOG1950 Glycosyl transferase, 56.2 11 0.00024 40.1 3.6 142 338-491 122-289 (369)
35 PF03414 Glyco_transf_6: Glyco 54.1 1.7E+02 0.0037 31.1 11.7 186 226-460 107-311 (337)
36 PF04012 PspA_IM30: PspA/IM30 53.7 35 0.00076 33.4 6.4 113 63-175 22-137 (221)
37 COG4575 ElaB Uncharacterized c 52.3 56 0.0012 29.0 6.6 75 97-173 11-86 (104)
38 TIGR02977 phageshock_pspA phag 50.5 43 0.00093 33.1 6.5 112 63-174 23-137 (219)
39 PRK10698 phage shock protein P 44.8 58 0.0013 32.4 6.4 113 63-175 23-138 (222)
40 PF04488 Gly_transf_sug: Glyco 42.1 13 0.00028 31.9 1.2 35 322-360 61-96 (103)
41 PF03314 DUF273: Protein of un 40.3 21 0.00045 35.6 2.4 24 333-356 34-57 (222)
42 PRK10132 hypothetical protein; 35.4 1.7E+02 0.0037 26.0 7.2 76 97-174 15-90 (108)
43 PF05397 Med15_fungi: Mediator 31.6 53 0.0011 29.5 3.4 52 62-114 31-82 (115)
44 KOG4748 Subunit of Golgi manno 30.2 44 0.00096 35.8 3.0 172 322-508 158-351 (364)
45 PF06785 UPF0242: Uncharacteri 30.2 3E+02 0.0065 29.4 8.9 107 72-181 107-225 (401)
46 PRK10404 hypothetical protein; 30.0 2.2E+02 0.0047 25.0 6.8 78 94-173 5-83 (101)
47 COG1842 PspA Phage shock prote 29.9 1.3E+02 0.0028 30.1 6.2 110 63-175 23-138 (225)
48 PRK10807 paraquat-inducible pr 29.5 1.7E+02 0.0037 33.1 7.7 47 123-173 474-520 (547)
49 cd04190 Chitin_synth_C C-termi 29.5 98 0.0021 30.3 5.3 24 339-362 72-96 (244)
50 PF15290 Syntaphilin: Golgi-lo 28.7 71 0.0015 33.1 4.1 40 125-164 120-170 (305)
51 PRK15384 type III secretion sy 27.3 29 0.00062 35.3 1.0 32 342-377 217-248 (336)
52 PRK15383 type III secretion sy 27.0 30 0.00066 35.1 1.1 33 341-377 219-251 (335)
53 PRK15382 non-LEE encoded effec 26.8 31 0.00067 35.1 1.1 33 341-377 211-243 (326)
54 PF07426 Dynactin_p22: Dynacti 26.7 2.3E+02 0.005 27.2 7.0 59 100-165 7-66 (174)
55 KOG2189 Vacuolar H+-ATPase V0 25.9 76 0.0016 37.2 4.1 36 81-117 245-280 (829)
56 PF10153 DUF2361: Uncharacteri 25.0 67 0.0015 28.9 2.8 39 102-144 1-43 (114)
57 PF04508 Pox_A_type_inc: Viral 23.2 84 0.0018 20.5 2.2 17 101-117 4-20 (23)
58 PF11380 DUF3184: Protein of u 22.9 2.1E+02 0.0045 32.7 6.6 22 341-362 102-125 (691)
59 PF11932 DUF3450: Protein of u 22.2 1.2E+02 0.0025 30.5 4.3 142 58-204 45-200 (251)
60 PF11500 Cut12: Spindle pole b 22.1 1.9E+02 0.0042 27.3 5.4 49 54-110 67-117 (152)
61 PF05957 DUF883: Bacterial pro 21.3 2.6E+02 0.0056 23.6 5.7 76 98-175 2-78 (94)
62 cd00761 Glyco_tranf_GTA_type G 21.1 4.8E+02 0.01 21.6 10.5 30 234-265 13-42 (156)
63 PLN02867 Probable galacturonos 20.7 2.1E+02 0.0045 32.4 6.1 77 95-173 90-168 (535)
No 1
>PLN02769 Probable galacturonosyltransferase
Probab=100.00 E-value=2.6e-142 Score=1148.77 Aligned_cols=506 Identities=68% Similarity=1.087 Sum_probs=477.7
Q ss_pred CCCCCCCCCCCCCCCCCCccccc--cccccCCcccccccccccccccccceehhhcccchhHHHHHhHHHHHHHHhhhhh
Q 010099 12 VTPVSPPAVPQSLPNTSNSKIAG--TVADSGRGGVDENENCELKFGSYCLWRREHREEMKDTMVKKLKDQLFVARAYYPS 89 (518)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dq~~~a~~y~~~ 89 (518)
..|..+++++.|.+.+++.++.. .+...+.+++|++|+||++||||||||+||+++|+|++||+|||||||||||||+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~c~~~~g~y~~w~~e~~~~~~d~~~~~l~Dql~~Ak~y~~~ 199 (629)
T PLN02769 120 PLPVKPHSVPVPSSDTKNKSTAIDKENKGQKADEDENEKSCELEFGSYCLWSEEHKEVMKDSIVKRLKDQLFVARAYYPS 199 (629)
T ss_pred CCCCCCCCCCCcccccccccccccccccccccccccccccceeeccceeeecccccccCcHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666667777665444 5567788999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCchHHHHHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhHHHHHHH
Q 010099 90 IAKLPSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFH 169 (518)
Q Consensus 90 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~ 169 (518)
|||+++|++|+|||++||||+||+|||+++|+|||+++.++|++|+++|++||+++|||.+|++|||||+++|||++++|
T Consensus 200 iak~~~~~~l~~el~~~i~e~~~~l~~~~~d~dlp~~~~~~~~~m~~~~~~ak~~~~dc~~~~~klr~~l~~~E~~~~~~ 279 (629)
T PLN02769 200 IAKLPGQEKLTRELKQNIQEHERVLSESITDADLPPFIQKKLEKMEQTIARAKSCPVDCNNVDRKLRQILDMTEDEAHFH 279 (629)
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhcCCcccchhhhhccHHHhcCCcccccccccCCCCCCCceEEEEEeCCchhhHHHHHHHHHhcCCCCc
Q 010099 170 MKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVMELSQADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKN 249 (518)
Q Consensus 170 ~~~~~~~~~la~~~~Pk~~hcl~~rl~~ey~~~~~~~~~~~~~~~l~d~~~ihIv~~sDNvLaasVvI~Sil~n~~~p~~ 249 (518)
+||++||+||||+|+|||||||+||||.|||.+++.++++|++++|+||+++|||+|||||||++|||||++.|+++|++
T Consensus 280 ~kq~~~l~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~~l~d~~l~Hy~ifSdNvlAasvvvNStv~na~~p~~ 359 (629)
T PLN02769 280 MKQSAFLYQLGVQTMPKSHHCLSMRLTVEYFKSSSLDMEDSNSEKFSDPSLRHYVIFSKNVLAASVVINSTVVHSRESGN 359 (629)
T ss_pred HHHHHHHHHHHHhhcCCCccccchhhHHHHHhCchhhccCCchhhccCCccceEEEEeccceeeeeehhhhhhhccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEeccccccchhhHHHhhhccccceecccccCCCCC-CcCccccccHHH
Q 010099 250 QVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVEYRVSLLSVDGPS-IHSKMQYISVFS 328 (518)
Q Consensus 250 i~FHIltd~is~~~~~~wf~~~~~~~a~i~v~~i~~f~~~~~~~~~L~ql~~~~~~~~~f~~~~~p~-~~~r~~ylS~~t 328 (518)
++||||||..++.+|++||..+++++|+|+|+++|+|+|+..+.++++|++.+++|+++|+++..|. ..++++|+|+++
T Consensus 360 ~VFHiVTD~~n~~am~~WF~~n~~~~a~v~v~n~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~eyiS~~n 439 (629)
T PLN02769 360 IVFHVLTDAQNYYAMKHWFDRNSYKEAAVQVLNIEDLILKDLDKFALKQLSLPEEFRVSFRSVDNPSSKQMRTEYLSVFS 439 (629)
T ss_pred eEEEEecChhhHHHHHHHHhcCCCccceEEEeeeeeeeecccchHHHHhhccchhhhhhhccCCCCchhccCcccccHHH
Confidence 9999999999999999999999999999999999999998778889999999999999998776665 344799999999
Q ss_pred HHHHhhhhhhccCCeEEEEecCeEEeCCchHHHcccCCCCeeeeecccccchhhhhhhhccCCCCCCCCccccceEEEec
Q 010099 329 HLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDL 408 (518)
Q Consensus 329 y~Rl~iPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~~~~~~~~~yl~~~~~~~~~~yfNsGVlLiNL 408 (518)
|+|||||++||+++||||||+|+||++||++||++||+|+++|||+||..+++.+..|++..+|+++.||||+|||||||
T Consensus 440 h~RfyIPELLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVedc~~rl~~~~~yl~~~~F~~~~CyFNSGVLLINL 519 (629)
T PLN02769 440 HSHFLLPEIFKKLKKVVVLDDDVVVQRDLSFLWNLDMGGKVNGAVQFCGVRLGQLKNYLGDTNFDTNSCAWMSGLNVIDL 519 (629)
T ss_pred HHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhcCCCCCCeEEEehhhhhhhhhhhhhhcccCCCccccccccCeeEeeH
Confidence 99999999999999999999999999999999999999999999999987777777888878898899999999999999
Q ss_pred hHHHHhhHHHHHHHHHHHHcc-CCcchhhhhchhhhhhccCcEEEcCCcccccCCCCCCCCCHhhhcCCEEEEecCCCCC
Q 010099 409 ARWRELDLTKTYQRLVREVSM-GEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKP 487 (518)
Q Consensus 409 ~~WR~~nit~~~~~~l~~~~~-~~~~~dQd~Ln~~li~f~~~i~~Lp~~WN~~~lg~~~~~~~~~~~~~~IIHY~G~~KP 487 (518)
++||++++++++++|++++.. +.+.+++++||++|++|+|++++||.+||++|+|+++.+..+.+++|+||||+|+.||
T Consensus 520 ~~WRk~nITe~~~~~~~~~~~~~~~~~~~~~Lp~lnlvF~g~v~~LD~rWNv~gLG~~~~i~~~~i~~paIIHYnG~~KP 599 (629)
T PLN02769 520 DKWRELDVTETYLKLLQKFSKDGEESLRAAALPASLLTFQDLIYPLDDRWVLSGLGHDYGIDEQAIKKAAVLHYNGNMKP 599 (629)
T ss_pred HHHHHhCHHHHHHHHHHHhhhcccccccccCcCHHHHHhcCeEEECCHHHccccccccccccccccCCcEEEEECCCCCC
Confidence 999999999999999988654 5788999999999999999999999999999999988877788899999999999999
Q ss_pred cccCCccchHHHHHHHHhhChhhhccccCC
Q 010099 488 WLELGIPRYKKFWKKFLNQEDQLLSECNVH 517 (518)
Q Consensus 488 W~~~~~~~y~~~W~~Y~~~s~~fl~~c~~~ 517 (518)
|+..+.++|+++||+|++++++|||+||||
T Consensus 600 W~e~~i~~yr~~W~kYl~~~~~fl~~Cni~ 629 (629)
T PLN02769 600 WLELGIPKYKKYWKRFLNRDDRFMDECNVN 629 (629)
T ss_pred ccCCCCChHHHHHHHHhccCChHHhhCCCC
Confidence 999999999999999999999999999997
No 2
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=100.00 E-value=3.5e-137 Score=1100.59 Aligned_cols=481 Identities=36% Similarity=0.658 Sum_probs=451.4
Q ss_pred cccccCCcccccccccc-cccccccceehhhcccchhHHHHHhHHHHHHHHhhhhhhcCCCCchHHHHHHHHHHHHHHHH
Q 010099 35 TVADSGRGGVDENENCE-LKFGSYCLWRREHREEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERV 113 (518)
Q Consensus 35 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~dq~~~a~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~ 113 (518)
++.+.+..++|+||+|. .++|||||||+||+++|+|++||+||||||||||| |+|||+++|++|+|||++||||+||+
T Consensus 160 ~~~~~~~~~~~~sk~~d~~~~g~y~~w~~e~~~~~~d~~vk~lkDQl~~AkaY-~~iak~~~~~~l~~eL~~~i~e~~r~ 238 (657)
T PLN02910 160 ADSQTQAAAIERSKSLDTSVKGKYSIWRRDYESPNSDSILKLMRDQIIMAKAY-ANIAKSNNVTNLYVSLMKQFRENKRA 238 (657)
T ss_pred HHHhhhHHHhhhhhccCcccccceeeecccccccCcHHHHHHHHHHHHHHHHH-HHHhccCCcHHHHHHHHHHHHHHHHH
Confidence 45578889999999987 66999999999999999999999999999999999 69999999999999999999999999
Q ss_pred hhcccCCCCCCccHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhHHHHHHHhhHHHHHHHHhhhcCCcccchhhh
Q 010099 114 LSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSM 193 (518)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcl~~ 193 (518)
||+|++|+|||+++.++|++|+++|++||++++||.++++|||||++++||++++|++|++|++||||+|+|||||||+|
T Consensus 239 ls~a~~d~dlp~~~~~k~~~M~~~l~~ak~~~~d~~~~~~KLraml~~~Ee~~~~~k~qs~~l~qlaa~t~PK~lHCL~m 318 (657)
T PLN02910 239 IGEATSDAELHSSALDQAKAMGHVLSIAKDQLYDCHTMARKLRAMLQSTERKVDALKKKSAFLIQLAAKTVPKPLHCLPL 318 (657)
T ss_pred HhhcccccccCchHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccHHHhcCCcccccccccCCCCCCCceEEEEEeCCchhhHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHhccC
Q 010099 194 RLTVEYFKSPSVVMELSQADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTF 273 (518)
Q Consensus 194 rl~~ey~~~~~~~~~~~~~~~l~d~~~ihIv~~sDNvLaasVvI~Sil~n~~~p~~i~FHIltd~is~~~~~~wf~~~~~ 273 (518)
|||.|||.+++.++++|++++|+||+++|||+|||||||+||||+|++.|+++|+++|||||||.+|+.+|++||++|++
T Consensus 319 RLt~Ey~~~~~~~~~~p~~~~l~dp~l~Hy~ifSDNVLAaSVVVnSTv~na~~P~k~VFHiVTD~~ny~aM~~WF~~n~~ 398 (657)
T PLN02910 319 QLAADYFLLGFQNKDYVNKKKLEDPSLYHYAIFSDNVLATSVVVNSTVLHAKEPQKHVFHIVTDKLNFAAMKMWFIINPP 398 (657)
T ss_pred hhHHHHHhCchhhccCCChhhccCCcceeEEEEecceeeEEeehhhhhhcccCccceEEEEecCccccHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEeccccc-cchhhHHHhhhccccceecccccCCC--------CCCcCccccccHHHHHHHhhhhhhccCCeE
Q 010099 274 KEATVQVLNIEQLNL-ESHDKAILIHMFLPVEYRVSLLSVDG--------PSIHSKMQYISVFSHLHYLLPEIFQSLTKV 344 (518)
Q Consensus 274 ~~a~i~v~~i~~f~~-~~~~~~~L~ql~~~~~~~~~f~~~~~--------p~~~~r~~ylS~~ty~Rl~iPellP~ldKV 344 (518)
++|+|||+++|+|+| +++++++|+|++.......+|+.... .....+|+|+|+++|+|||||++||+++||
T Consensus 399 ~~A~V~V~nie~f~wln~~~~pvl~qles~~~~~~yf~~~~~~~~~~~~~~~k~r~p~ylS~lnY~Rf~LPelLp~l~KV 478 (657)
T PLN02910 399 AKATIQVENIDDFKWLNSSYCSVLRQLESARIKEYYFKANHPSSLSAGADNLKYRNPKYLSMLNHLRFYLPEVYPKLEKI 478 (657)
T ss_pred ccceEEEeehhhcccccccccHHHHHHhhhhhhhhhhhccccccccccccccccCCcchhhHHHHHHHHHHHHhhhcCeE
Confidence 999999999999996 77888999999887666666753211 113345999999999999999999999999
Q ss_pred EEEecCeEEeCCchHHHcccCCCCeeeeecccccchhhhhhhhc------cCCCCCCCCccccceEEEechHHHHhhHHH
Q 010099 345 VVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLG------ENSYDKNSCAWMSGLNIVDLARWRELDLTK 418 (518)
Q Consensus 345 LYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~~~~~~~~~yl~------~~~~~~~~~yfNsGVlLiNL~~WR~~nit~ 418 (518)
||||+||||++||++||++||+|+++|||+||...++++..|++ ...|+++.||||+|||||||++||++++|+
T Consensus 479 LYLD~DVVV~gDLseLw~iDL~g~v~AAVedc~~~f~r~~~ylnfs~P~i~~yFNs~aCyfNsGVmVIDL~~WRe~nITe 558 (657)
T PLN02910 479 LFLDDDIVVQKDLTPLWSIDMQGMVNGAVETCKESFHRFDKYLNFSNPKISENFDPNACGWAFGMNMFDLKEWRKRNITG 558 (657)
T ss_pred EEEeCCEEecCchHHHHhCCcCCceEEEecccchhhhhhhhhhccCChhhhhccCCCCceeecccEEEeHHHHHHhhHHH
Confidence 99999999999999999999999999999999887666666654 236788999999999999999999999999
Q ss_pred HHHHHHHHHccCCcchhhhhchhhhhhccCcEEEcCCcccccCCCCCCCCCHhhhcCCEEEEecCCCCCcccCCccchHH
Q 010099 419 TYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKK 498 (518)
Q Consensus 419 ~~~~~l~~~~~~~~~~dQd~Ln~~li~f~~~i~~Lp~~WN~~~lg~~~~~~~~~~~~~~IIHY~G~~KPW~~~~~~~y~~ 498 (518)
.++.| ++.+.+..+||||+|||+|++|+|++++||++||++|+|+++.+....+++|+||||+|++|||...++++|++
T Consensus 559 ~ye~w-~eln~~~~L~dqgsLPpgLLvF~g~i~pLD~rWNv~GLGyd~~v~~~~i~~AAVLHynG~~KPWl~l~i~~Yr~ 637 (657)
T PLN02910 559 IYHYW-QDLNEDRTLWKLGSLPPGLITFYNLTYPLDRSWHVLGLGYDPALNQTEIENAAVVHYNGNYKPWLDLAIAKYKP 637 (657)
T ss_pred HHHHH-HHhcccccccccCCCChHHHHHhCceeecCchheecCCCCCcccccccccCcEEEEeCCCCCcccccCcccchH
Confidence 77654 55567889999999999999999999999999999999999888888899999999999999999999999999
Q ss_pred HHHHHHhhChhhhccccCC
Q 010099 499 FWKKFLNQEDQLLSECNVH 517 (518)
Q Consensus 499 ~W~~Y~~~s~~fl~~c~~~ 517 (518)
+|.+|++++++|||+|||+
T Consensus 638 ~W~kYl~~d~~fl~~Cni~ 656 (657)
T PLN02910 638 YWSRYVQYDNPYLQLCNIS 656 (657)
T ss_pred HHHHHccCCChHHHhCCCC
Confidence 9999999999999999997
No 3
>PLN02829 Probable galacturonosyltransferase
Probab=100.00 E-value=4.2e-130 Score=1047.78 Aligned_cols=453 Identities=40% Similarity=0.730 Sum_probs=427.8
Q ss_pred hcccchhHHHHHhHHHHHHHHhhhhhhcCCCCchHHHHHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHHHHHHHhhc
Q 010099 64 HREEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKS 143 (518)
Q Consensus 64 ~~~~~~d~~~~~~~dq~~~a~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~ 143 (518)
.+++|+|++||+|||||||||||+ +|||+++|++|+||||+||||+||+||+|++|+|||+++.++|++|+++|++||+
T Consensus 176 ~~~~~~d~~v~~lkDql~~AkaY~-~iak~~~~~~l~~el~~~i~e~~r~l~~a~~d~~lp~~~~~~~~~m~~~i~~ak~ 254 (639)
T PLN02829 176 DQTVMPDARVRQLRDQLIKAKVYL-SLPATKANPHFTRELRLRIKEVQRVLGDASKDSDLPKNANEKLKAMEQTLAKGKQ 254 (639)
T ss_pred ccccCchHHHHHHHHHHHHHHHHH-HHhccCCcHHHHHHHHHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHHHh
Confidence 356899999999999999999995 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhHHHHHHHHHHHhHHHHHHHhhHHHHHHHHhhhcCCcccchhhhhccHHHhcCCcccccccccCCCCCCCceEE
Q 010099 144 VPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVMELSQADRFSDPSLHHY 223 (518)
Q Consensus 144 ~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rl~~ey~~~~~~~~~~~~~~~l~d~~~ihI 223 (518)
+++||.++++|||||++++||++++|++|++|++||||+|+|||||||+||||.|||++++.++++|++++|+||+++||
T Consensus 255 ~~~d~~~~~~KLr~~l~~~Ee~~~~~~~q~~~l~~laa~t~PK~lHCL~mrLt~Ey~~~~~~~~~~p~~~~l~dp~l~Hy 334 (639)
T PLN02829 255 MQDDCSIVVKKLRAMLHSAEEQLRVHKKQTMFLTQLTAKTLPKGLHCLPLRLTTEYYNLNSSEQQFPNQEKLEDPQLYHY 334 (639)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhhHHHHHhCChhhccCCChhhccCCccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCchhhHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEeccccc-cchhhHHHhhhccc
Q 010099 224 VIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNL-ESHDKAILIHMFLP 302 (518)
Q Consensus 224 v~~sDNvLaasVvI~Sil~n~~~p~~i~FHIltd~is~~~~~~wf~~~~~~~a~i~v~~i~~f~~-~~~~~~~L~ql~~~ 302 (518)
|+|||||||+||||+|++.|+++|+++|||||||.+|+.+|++||++|++++|+|||+++|+|+| +++++++++|++.+
T Consensus 335 ~ifSdNVLAasVVVnStv~na~~p~k~VFHivTD~~ny~aM~~WF~~n~~~~A~v~V~nie~f~wln~~~~pvl~ql~~~ 414 (639)
T PLN02829 335 ALFSDNVLAAAVVVNSTVTNAKHPSKHVFHIVTDRLNYAAMRMWFLVNPPGKATIQVQNIEEFTWLNSSYSPVLKQLGSQ 414 (639)
T ss_pred EEEecceeEEEeeeehhhhcccCccceEEEEecCccchHHHHHHHhhCCCccceEEEEehhhcccccccccHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999996 77889999999999
Q ss_pred cceecccccCCC----CCCcCccccccHHHHHHHhhhhhhccCCeEEEEecCeEEeCCchHHHcccCCCCeeeeeccccc
Q 010099 303 VEYRVSLLSVDG----PSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSV 378 (518)
Q Consensus 303 ~~~~~~f~~~~~----p~~~~r~~ylS~~ty~Rl~iPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~~ 378 (518)
++++++|++... +..+.+|+|+|.++|+|||||++||+++||||||+||||++||++||++||+|+++|||+||..
T Consensus 415 ~~~~~yf~~~~~~~~~~~k~r~p~ylS~lnY~RfyLPeLLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVedc~~ 494 (639)
T PLN02829 415 SMIDYYFRAHRANSDSNLKYRNPKYLSILNHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTGLWSIDLKGNVNGAVETCGE 494 (639)
T ss_pred hhhhhhhhccccCcccccccCCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEeCCChHHHHhCCCCCceEEEeccchh
Confidence 999999965321 1134459999999999999999999999999999999999999999999999999999999987
Q ss_pred chhhhhhhhc------cCCCCCCCCccccceEEEechHHHHhhHHHHHHHHHHHHccCCcchhhhhchhhhhhccCcEEE
Q 010099 379 SLGQLKSYLG------ENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYA 452 (518)
Q Consensus 379 ~~~~~~~yl~------~~~~~~~~~yfNsGVlLiNL~~WR~~nit~~~~~~l~~~~~~~~~~dQd~Ln~~li~f~~~i~~ 452 (518)
.++++..|++ ..+|+++.||||+|||||||++||++++|++++.|++.+ .+..+|+||+||++|++|+|++++
T Consensus 495 ~f~r~~~~l~fs~p~i~~~Fn~~~CyFNSGVmVINL~~WRe~nITe~y~~wm~~n-~~r~L~dlgaLPp~Ll~F~g~i~~ 573 (639)
T PLN02829 495 SFHRFDRYLNFSNPLISKNFDPHACGWAYGMNVFDLDEWKRQNITEVYHSWQKLN-HDRQLWKLGTLPPGLITFWKRTYP 573 (639)
T ss_pred hhhhhhhhhhccchHhhhccCCcccceecceEEEeHHHHHHhChHHHHHHHHHHc-cCCccccccCCChHHHHhcCceEe
Confidence 6666665543 236778899999999999999999999999999998664 455789999999999999999999
Q ss_pred cCCcccccCCCCCCCCCHhhhcCCEEEEecCCCCCcccCCccchHHHHHHHHhhChhhhccccCCC
Q 010099 453 LDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVHP 518 (518)
Q Consensus 453 Lp~~WN~~~lg~~~~~~~~~~~~~~IIHY~G~~KPW~~~~~~~y~~~W~~Y~~~s~~fl~~c~~~~ 518 (518)
||++||++|+||++.+..+.+++|+||||+|++|||...++++|+++|.+|++++++|||+|||||
T Consensus 574 LD~rWNv~GLGy~~~v~~~~i~~aaIIHynG~~KPWle~~i~~yr~lW~kYl~~~~~fl~~Cni~p 639 (639)
T PLN02829 574 LDRSWHVLGLGYNPNVNQRDIERAAVIHYNGNMKPWLEIGIPKYRNYWSKYVDYDQVYLRECNINP 639 (639)
T ss_pred cChhheecCCCCCcccchhcccCCeEEEECCCCCccccCCcccchHHHHHHHhcCchHHHhCCCCC
Confidence 999999999999988778899999999999999999999999999999999999999999999998
No 4
>PLN02742 Probable galacturonosyltransferase
Probab=100.00 E-value=1.2e-123 Score=989.25 Aligned_cols=451 Identities=36% Similarity=0.597 Sum_probs=420.7
Q ss_pred cccchhHHHHHhHHHHHHHHhhhhhhcCCCCchHHHHHHHHHHHHHHHHhhcccCCCCC--CccHHHHHHHHHHHHHHhh
Q 010099 65 REEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVDL--PPGIEKKIQRMEAAITKAK 142 (518)
Q Consensus 65 ~~~~~d~~~~~~~dq~~~a~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~m~~~~~~~~ 142 (518)
+-...|++||+|||||||||||+ +|||+++|++|+|||++||||+||+||+|++|+++ |+++.++|++|+++|++||
T Consensus 68 ~~~~~~~~~~~l~dql~~Ak~y~-~ia~~~~~~~l~~el~~~i~e~~~~l~~a~~d~~~~~~~~~~~~~~~m~~~i~~ak 146 (534)
T PLN02742 68 EMLSATSFSRQLADQITLAKAYV-VIAKEHNNLQLAWELSAQIRNCQLLLSKAATRGEPITVEEAEPIIRDLAALIYQAQ 146 (534)
T ss_pred hhcChHHHHHHHHHHHHHHHHHH-HHhccCCcHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHH
Confidence 34467999999999999999998 99999999999999999999999999999999997 4899999999999999999
Q ss_pred cCCCcchhHHHHHHHHHHHhHHHHHHHhhHHHHHHHHhhhcCCcccchhhhhccHHHhcCCcccc---cccccCCCCCCC
Q 010099 143 SVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVM---ELSQADRFSDPS 219 (518)
Q Consensus 143 ~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rl~~ey~~~~~~~~---~~~~~~~l~d~~ 219 (518)
++++||.++++|||||++++||++++|++|++|++||||+|+|||||||+||||+|||++++.++ +.|+.++|+||+
T Consensus 147 ~~~~d~~~~~~klr~~l~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~~ 226 (534)
T PLN02742 147 DLHYDSATTIMTLKAHIQALEERANAATVQSTKFGQLAAEALPKSLYCLGVRLTTEWFKNPKLQRKAEEKRNSPRLVDNN 226 (534)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchHhHHHHHhCchhhhccccccccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998853 456778999999
Q ss_pred ceEEEEEeCCchhhHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEeccccc-cchhhHHHhh
Q 010099 220 LHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNL-ESHDKAILIH 298 (518)
Q Consensus 220 ~ihIv~~sDNvLaasVvI~Sil~n~~~p~~i~FHIltd~is~~~~~~wf~~~~~~~a~i~v~~i~~f~~-~~~~~~~L~q 298 (518)
++|||+|||||||++|||||++.|+++|++++||||||..++.+|++||..+++++++|+|+++++|.| +.++.++++|
T Consensus 227 l~Hy~ifSdNvlAasvvvnStv~nsk~P~~~VFHiVTD~~n~~aM~~WF~~n~~~~a~v~V~n~e~f~wl~~~~~pvl~q 306 (534)
T PLN02742 227 LYHFCVFSDNILATSVVVNSTVSNAKHPDQLVFHLVTDEVNYGAMQAWFAMNDFKGVTVEVQKIEEFSWLNASYVPVLKQ 306 (534)
T ss_pred cceEEEEeccchhhhhhhhhhHhhhcCCCcEEEEEeechhhHHHHHHHHhhCCCCccEEEEEEeccccccccccchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 6678899999
Q ss_pred hccccceecccccCC----CCCCcCccccccHHHHHHHhhhhhhccCCeEEEEecCeEEeCCchHHHcccCCCCeeeeec
Q 010099 299 MFLPVEYRVSLLSVD----GPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQ 374 (518)
Q Consensus 299 l~~~~~~~~~f~~~~----~p~~~~r~~ylS~~ty~Rl~iPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~ 374 (518)
++..+.+.++|++.. .+....+|+|+|+++|+||+||++||+++||||||+|+||++||++||++||+|+++|||+
T Consensus 307 l~~~~~~~~yf~~~~~~~~~~~k~r~p~y~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL~~~DL~~~viaAVe 386 (534)
T PLN02742 307 LQDSDTQSYYFSGSQDDGKTEIKFRNPKYLSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVE 386 (534)
T ss_pred hhhhhhhhhhcccccccccccccccCcccccHHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHHhcCCCCCCEEEEeC
Confidence 999877777776543 1112344899999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhhhc------cCCCCCCCCccccceEEEechHHHHhhHHHHHHHHHHHHccCCcchhhhhchhhhhhccC
Q 010099 375 SCSVSLGQLKSYLG------ENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQD 448 (518)
Q Consensus 375 d~~~~~~~~~~yl~------~~~~~~~~~yfNsGVlLiNL~~WR~~nit~~~~~~l~~~~~~~~~~dQd~Ln~~li~f~~ 448 (518)
||...++++..|++ ..+|+++.||||+|||||||++||++++|+.++.|. +.+.+..+||||+||+++++|+|
T Consensus 387 dC~~~f~ry~~yLnfS~p~i~~~f~~~aC~fNsGV~ViDL~~WRe~nITe~~~~w~-e~n~~~~l~d~gaLpp~LLaF~g 465 (534)
T PLN02742 387 TCLETFHRYHKYLNFSHPLISSHFDPDACGWAFGMNVFDLVAWRKANVTAIYHYWQ-EQNVDRTLWKLGTLPPGLLTFYG 465 (534)
T ss_pred chhhhhhhhhhhhcccchhhhccCCCCccccccCcEEEeHHHHHhhcHHHHHHHHH-HhccccccccccccchHHHHHcC
Confidence 99877778877775 346788999999999999999999999999887664 55667789999999999999999
Q ss_pred cEEEcCCcccccCCCCCCCCCHhhhcCCEEEEecCCCCCcccCCccchHHHHHHHHhhChhhhccccCC
Q 010099 449 LVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVH 517 (518)
Q Consensus 449 ~i~~Lp~~WN~~~lg~~~~~~~~~~~~~~IIHY~G~~KPW~~~~~~~y~~~W~~Y~~~s~~fl~~c~~~ 517 (518)
++++||.+||+.|+|++..++.+.+++|+||||+|++|||.+.++++|+++|++|++++++|||+||||
T Consensus 466 ~~~~LD~rWNv~gLG~~~~v~~~~i~~aaILHynG~~KPWl~~~i~~yr~~W~kYl~~s~~fl~~Cni~ 534 (534)
T PLN02742 466 LTEPLDRRWHVLGLGYDTNIDPRLIESAAVLHFNGNMKPWLKLAIERYKPLWERYVNYSHPYLQQCNFH 534 (534)
T ss_pred cceecChhheecccccccccchhhccCCeEEEECCCCCcccccCCcccchHHHHHHccCCHHHHhCCCC
Confidence 999999999999999988777789999999999999999999999999999999999999999999997
No 5
>PLN02718 Probable galacturonosyltransferase
Probab=100.00 E-value=4.9e-118 Score=956.98 Aligned_cols=433 Identities=38% Similarity=0.715 Sum_probs=401.7
Q ss_pred ccchhHHHHHhHHHHHHHHhhhhhhcCCCCchHHHHHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHHHHHHHhhcCC
Q 010099 66 EEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVP 145 (518)
Q Consensus 66 ~~~~d~~~~~~~dq~~~a~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~ 145 (518)
+.|+|++||+|||||||||||+ +|||+++|++|+|||++||||+||+||+|+.|+|||+++.++|++|+++|++||+++
T Consensus 160 ~~~~d~~v~~~~dql~~ak~y~-~~a~~~~~~~~~~el~~~i~e~~~~l~~~~~d~~lp~~~~~~~~~m~~~~~~a~~~~ 238 (603)
T PLN02718 160 RRATDEKVKEIRDKIIQAKAYL-NLAPPGSNSQLVKELRLRTKELERAVGDATKDKDLSKSALQRMKSMEVTLYKASRVF 238 (603)
T ss_pred ccCcHHHHHHHHHHHHHHHHHH-HHhccCCcHHHHHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHHHHHHHhcc
Confidence 4699999999999999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHHHhHHHHHHHhhHHHHHHHHhhhcCCcccchhhhhccHHHhcCCcccccccccCCCCCCCceEEEE
Q 010099 146 VDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVMELSQADRFSDPSLHHYVI 225 (518)
Q Consensus 146 ~~~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rl~~ey~~~~~~~~~~~~~~~l~d~~~ihIv~ 225 (518)
+||.+|++|||||++++||++++|++|++|++||||+|+|||||||+||||.|||.+++.++++|++++|+||+++|||+
T Consensus 239 ~d~~~~~~klr~~~~~~e~~~~~~~~q~~~~~~laa~~~PK~lhCL~~rLt~ey~~~~~~~~~~~~~~~l~d~~~~Hia~ 318 (603)
T PLN02718 239 PNCPAIATKLRAMTYNTEEQVRAQKNQAAYLMQLAARTTPKGLHCLSMRLTAEYFALDPEKRQLPNQQRYNDPDLYHYVV 318 (603)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHhhCChhhccCCChhhccCCcceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCchhhHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEeccccc-cchhhHHHhhhccccc
Q 010099 226 FSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNL-ESHDKAILIHMFLPVE 304 (518)
Q Consensus 226 ~sDNvLaasVvI~Sil~n~~~p~~i~FHIltd~is~~~~~~wf~~~~~~~a~i~v~~i~~f~~-~~~~~~~L~ql~~~~~ 304 (518)
++|||+++||+|+|++.|+.+|++++||||||++++++|+.||..++..+++|+|+++++|.| +.++.+.++++
T Consensus 319 ~sDNvlaasVvInSil~Ns~np~~ivFHVvTD~is~~~mk~wf~l~~~~~a~I~V~~Iddf~~lp~~~~~~lk~l----- 393 (603)
T PLN02718 319 FSDNVLACSVVVNSTISSSKEPEKIVFHVVTDSLNYPAISMWFLLNPPGKATIQILNIDDMNVLPADYNSLLMKQ----- 393 (603)
T ss_pred EcCCceeEEEEhhhhhhccCCCCcEEEEEEeCCCCHHHHHHHHHhCCCCCcEEEEEecchhccccccchhhhhhc-----
Confidence 999999999999999999988889999999999999999999999887789999999999885 33444444332
Q ss_pred eecccccCCCCCCcCccccccHHHHHHHhhhhhhccCCeEEEEecCeEEeCCchHHHcccCCCCeeeeecccccc---hh
Q 010099 305 YRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVS---LG 381 (518)
Q Consensus 305 ~~~~f~~~~~p~~~~r~~ylS~~ty~Rl~iPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~~~---~~ 381 (518)
+..+++|+|.++|+||+||++||+++||||||+|+||++||++||++||+|+++|||+||... ++
T Consensus 394 ------------~s~~~~~~S~~~y~Rl~ipellp~l~KvLYLD~DvVV~~DL~eL~~iDl~~~v~aaVedC~~~~~~~~ 461 (603)
T PLN02718 394 ------------NSHDPRYISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRLWSLDMKGKVVGAVETCLEGEPSFR 461 (603)
T ss_pred ------------cccccccccHHHHHHHHHHHHhcccCEEEEEECCEEecCCHHHHhcCCCCCcEEEEeccccccccchh
Confidence 123468999999999999999999999999999999999999999999999999999999753 23
Q ss_pred hhhhhhc------cCCCCCCCCccccceEEEechHHHHhhHHHHHHHHHHHHccCCcchhhhhchhhhhhccCcEEEcCC
Q 010099 382 QLKSYLG------ENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDG 455 (518)
Q Consensus 382 ~~~~yl~------~~~~~~~~~yfNsGVlLiNL~~WR~~nit~~~~~~l~~~~~~~~~~dQd~Ln~~li~f~~~i~~Lp~ 455 (518)
.+..|++ ..+|+++.||||+|||||||++||++++++++++|++++. +..+||||+|||++++|+|++++||+
T Consensus 462 ~~~~~lnfs~p~i~~~fn~~~CyfNsGVlLIDLk~WReenITe~~~~~l~~n~-~~~l~dqdaLpp~LlvF~gri~~LD~ 540 (603)
T PLN02718 462 SMDTFINFSDPWVAKKFDPKACTWAFGMNLFDLEEWRRQKLTSVYHKYLQLGV-KRPLWKAGSLPIGWLTFYNQTVALDK 540 (603)
T ss_pred hhhhhhhccchhhhcccCCCccccccceEEEeHHHHHhcChHHHHHHHHHhcc-CccccCcccccHHHHHhcCceeecCh
Confidence 3334432 2357889999999999999999999999999999998754 34789999999999999999999999
Q ss_pred cccccCCCCCCCCCHhhhcCCEEEEecCCCCCcccCCccchHHHHHHHHhhChhhhccccCC
Q 010099 456 VWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVH 517 (518)
Q Consensus 456 ~WN~~~lg~~~~~~~~~~~~~~IIHY~G~~KPW~~~~~~~y~~~W~~Y~~~s~~fl~~c~~~ 517 (518)
+||++|+|++..+....+++|+||||+|++|||++.+++.|+++|.+|++++++|||+||||
T Consensus 541 rWNv~gLG~~~~i~~~~i~~aaIIHYnG~~KPWle~~i~~yr~~W~k~v~~~~~~l~~Cn~~ 602 (603)
T PLN02718 541 RWHVLGLGHESGVGASDIEQAAVIHYDGVMKPWLDIGIGKYKRYWNIHVPYHHPYLQQCNIH 602 (603)
T ss_pred HHhccCccccccccccccCCCEEEEECCCCCccccCChhhHHHHHHhhcCCCChHHHhcCCC
Confidence 99999999988777778899999999999999999999999999999999999999999997
No 6
>PLN02523 galacturonosyltransferase
Probab=100.00 E-value=4.1e-106 Score=856.01 Aligned_cols=447 Identities=33% Similarity=0.572 Sum_probs=397.9
Q ss_pred hHHHHHhHHHHHHHHhhhhhhcCCC-CchHHHH---HHHHHHHHHHH-----H-hhcc--cCC----CCCCccHHHHHHH
Q 010099 70 DTMVKKLKDQLFVARAYYPSIAKLP-SQDKLTR---ALRQNIQEVER-----V-LSES--ATD----VDLPPGIEKKIQR 133 (518)
Q Consensus 70 d~~~~~~~dq~~~a~~y~~~~~~~~-~~~~~~~---~l~~~~~~~~~-----~-~~~~--~~~----~~~~~~~~~~~~~ 133 (518)
|.+.|+..|...++.||.+..+|++ .+++++| ||..|+.++.. . +++. +.| .+||+++.+++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 160 (559)
T PLN02523 81 DQIRKQADDHRTLVNAYAAYARKLKLDNSKLLRLFADLSRNFTDLISKPSYRALLSSDGSAIDEDVLRQFEKEVKERVKV 160 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhcCccccccccccCCcCchHHHhhcchhHHHHHHH
Confidence 8899999999999999998888998 7777776 88899887752 1 2221 233 3489999999999
Q ss_pred HHHHHHHhhcCCCcchhHHHHHHHHHHHhHHHHHHHhhHHHHHHHHhhhcCCcccchhhhhccHHHhcCCccccc--ccc
Q 010099 134 MEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVME--LSQ 211 (518)
Q Consensus 134 m~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rl~~ey~~~~~~~~~--~~~ 211 (518)
|+++|++||+ .+||..+++|||+|++++||+++++++|++|++||||+|+|||||||+||||+|||++++.+.+ .++
T Consensus 161 ~~~~~~~a~~-~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~ 239 (559)
T PLN02523 161 ARQMIAESKE-SFDNQLKIQKLKDTIFAVNEQLTKAKKNGAFASLIAAKSIPKSLHCLAMRLMEERIAHPEKYKDEGKPP 239 (559)
T ss_pred HHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccchhhHhHHHHHhChHhhhccCCCc
Confidence 9999999998 7788899999999999999999999999999999999999999999999999999999887543 455
Q ss_pred cCCCCCCCceEEEEEeCCchhhHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEeccccc-cc
Q 010099 212 ADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNL-ES 290 (518)
Q Consensus 212 ~~~l~d~~~ihIv~~sDNvLaasVvI~Sil~n~~~p~~i~FHIltd~is~~~~~~wf~~~~~~~a~i~v~~i~~f~~-~~ 290 (518)
+++|+||+++|||+|||||++++|+|+|++.|+++|++++||||||++++.+|++||..+++.+++|+|++|++|+| ++
T Consensus 240 ~~~l~dp~l~Hy~ifSdNvlAAsVvInStv~Ns~~p~~~VFHIVTD~ln~~amk~Wf~~n~~~~a~I~V~~Iedf~~ln~ 319 (559)
T PLN02523 240 PPELEDPSLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDRMNLAAMKVMFKMRDLNGAHVEVKAVEDYKFLNS 319 (559)
T ss_pred chhccCCCcceEEEecCcchhhhhhHHHHHHccCCCcceEEEEEeCCCCHHHHHHHHhhCCCCCcEEEEEEeehhhhccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999995 77
Q ss_pred hhhHHHhhhccccceecccccCCCC-------CCcCccccccHHHHHHHhhhhhhccCCeEEEEecCeEEeCCchHHHcc
Q 010099 291 HDKAILIHMFLPVEYRVSLLSVDGP-------SIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDI 363 (518)
Q Consensus 291 ~~~~~L~ql~~~~~~~~~f~~~~~p-------~~~~r~~ylS~~ty~Rl~iPellP~ldKVLYLD~DvVV~~DLseLw~i 363 (518)
++.++++|++..+..+.+|.+.... ....+|+|+|+++|+||+||++||+++||||||+||||++||++||++
T Consensus 320 ~~~pvlk~l~s~~~~~~~f~~~~~~~~~~~~~~k~~~p~ylS~~ny~Rf~IPeLLP~ldKVLYLD~DVVVq~DLseLw~i 399 (559)
T PLN02523 320 SYVPVLRQLESANLQKFYFENKLENATKDSSNMKFRNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWKI 399 (559)
T ss_pred ccchHHHhhhhhhhhhhhccccccccccccccccccCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEecCCHHHHHhC
Confidence 8888988888766666666542111 012337999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeeecccccchhhhhhhhc------cCCCCCCCCccccceEEEechHHHHhhHHHHHHHHHHHHccCCcchhhh
Q 010099 364 NMGGKVNGAVQSCSVSLGQLKSYLG------ENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAV 437 (518)
Q Consensus 364 DL~g~~igAV~d~~~~~~~~~~yl~------~~~~~~~~~yfNsGVlLiNL~~WR~~nit~~~~~~l~~~~~~~~~~dQd 437 (518)
||+|+++|||+||...++++..+++ ...|+++.||||+|||||||++||++++|++++.| ++.+.+..+||||
T Consensus 400 DL~gkv~aAVeDc~~~~~r~~~~ln~s~p~i~~yFNs~aC~wnsGVmlINL~~WRe~nITek~~~w-~~ln~~~~l~Dqd 478 (559)
T PLN02523 400 DMDGKVNGAVETCFGSFHRYAQYLNFSHPLIKEKFNPKACAWAYGMNIFDLDAWRREKCTEQYHYW-QNLNENRTLWKLG 478 (559)
T ss_pred cCCCceEEEehhhhhHHHHHHHhhcccchhhhhCcCCCcccccCCcEEEeHHHHHHhchHHHHHHH-HHhcccccccccc
Confidence 9999999999999754445555443 23577899999999999999999999999999754 5556678899999
Q ss_pred hchhhhhhccCcEEEcCCcccccCCCCCCCCCHhhhcCCEEEEecCCCCCcccCCccchHHHHHHHHhhChhhhccccCC
Q 010099 438 ALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVH 517 (518)
Q Consensus 438 ~Ln~~li~f~~~i~~Lp~~WN~~~lg~~~~~~~~~~~~~~IIHY~G~~KPW~~~~~~~y~~~W~~Y~~~s~~fl~~c~~~ 517 (518)
+|||+|++|+|++++||++||++|+|+++.++.+.+++|+||||+|++|||+..+.++|+++|++|++++++|||+|||+
T Consensus 479 aLpp~LivF~gri~~LD~rWNvlglGy~~~i~~~~i~~paIIHYnG~~KPWle~~i~~yr~~W~kYl~~~~~fl~~Cn~~ 558 (559)
T PLN02523 479 TLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIRNAAVIHFNGNMKPWLDIAMNQFKPLWTKYVDYDMEFVQACNFG 558 (559)
T ss_pred ccchHHHHhcCceEecCchhhccCCccCCCccccccCCCEEEEECCCCCccccCCCCcchHHHHHHHccCCHHHHhCCCC
Confidence 99999999999999999999999999988777788899999999999999999999999999999999999999999999
Q ss_pred C
Q 010099 518 P 518 (518)
Q Consensus 518 ~ 518 (518)
|
T Consensus 559 ~ 559 (559)
T PLN02523 559 L 559 (559)
T ss_pred C
Confidence 7
No 7
>PLN02870 Probable galacturonosyltransferase
Probab=100.00 E-value=8e-107 Score=859.17 Aligned_cols=411 Identities=34% Similarity=0.596 Sum_probs=374.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhHHHHHHHhhHHHHHH
Q 010099 98 KLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLY 177 (518)
Q Consensus 98 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~ 177 (518)
++.+||.+-+.| -.-+|+++|+|||+++++.++ +||+.++||.++++|||||++++||+++++++|++|++
T Consensus 90 ~~~~~~~~~l~~--~~~~~~~~d~~lp~s~~~~~~-------~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~ 160 (533)
T PLN02870 90 RLVRDFYKILNE--VNTEEIPDGLKLPDSFSQLVS-------DMKNNHYDAKTFAFVLRAMMEKFERELRESKFAELMNK 160 (533)
T ss_pred hhHHHHHHHHHH--hccccccccccCChhHHHHHH-------HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554443 345688999999999998877 77789999999999999999999999999999999999
Q ss_pred HHhhhcCCcccchhhhhccHHHhcCCcccccccccC---CCCCCCceEEEEEeCCchhhHHHHHHHHHhcCCCCceEEEE
Q 010099 178 QLAVQTMPKSLHCLSMRLTVEYFKSPSVVMELSQAD---RFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHV 254 (518)
Q Consensus 178 ~la~~~~Pk~~hcl~~rl~~ey~~~~~~~~~~~~~~---~l~d~~~ihIv~~sDNvLaasVvI~Sil~n~~~p~~i~FHI 254 (518)
||||+|+|||||||+||||+|||+++..++++|++| +|+||+++|||+|||||||+||||+|++.|+++|+++||||
T Consensus 161 ~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~e~~~~l~dp~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~VFHv 240 (533)
T PLN02870 161 HFAASSIPKGIHCLSLRLTDEYSSNAHARKQLPSPELLPVLSDNSYHHFVLSTDNILAASVVVSSTVQSSLKPEKIVFHV 240 (533)
T ss_pred HHHHhhcCCCccccchhhHHHHHhCchhhhcCCcccccccccCCcceeEEEEecceeEEEeeeehhhhcccCccceEEEE
Confidence 999999999999999999999999999999988776 89999999999999999999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHhccCCCceEEEEEeccccc-cchhhHHHhhhccccceecccccCCCCC---------------Cc
Q 010099 255 LTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNL-ESHDKAILIHMFLPVEYRVSLLSVDGPS---------------IH 318 (518)
Q Consensus 255 ltd~is~~~~~~wf~~~~~~~a~i~v~~i~~f~~-~~~~~~~L~ql~~~~~~~~~f~~~~~p~---------------~~ 318 (518)
|||.+|+.+|++||++|++++|+|||+++|+|+| +++++++|+|++..++++.+|+....+. ..
T Consensus 241 vTD~~n~~aM~~WF~~n~~~~a~v~V~~~e~f~wl~~~~~pvl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (533)
T PLN02870 241 ITDKKTYAGMHSWFALNSVSPAIVEVKGVHQFDWLTRENVPVLEAVESHNGIRNYYHGNHIAGANLSETTPRTFASKLQA 320 (533)
T ss_pred ecCccccHHHHHHHhhCCCccceEEEEehhhccccccccchHHHHHhhhHHHHHHhhcccccccccccccchhhhccccc
Confidence 9999999999999999999999999999999995 8888999999999888888876433321 23
Q ss_pred CccccccHHHHHHHhhhhhhccCCeEEEEecCeEEeCCchHHHcccCCCCeeeeecccccc-----hhhhhhhhc-----
Q 010099 319 SKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVS-----LGQLKSYLG----- 388 (518)
Q Consensus 319 ~r~~ylS~~ty~Rl~iPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~~~-----~~~~~~yl~----- 388 (518)
.+|+|+|+++|+||+||++||+++||||||+|+||++||++||++||+|+++|||+||... .+++..|++
T Consensus 321 ~~p~ylS~lny~Rl~LPelLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviaAVeDc~~~~~~~~~~~~~~YfNfs~p~ 400 (533)
T PLN02870 321 RSPKYISLLNHLRIYLPELFPNLDKVVFLDDDVVIQRDLSPLWDIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFSHPL 400 (533)
T ss_pred CCccccCHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhhCCCCCceEEEEccccccchhhhhhhhhhhcccccch
Confidence 4699999999999999999999999999999999999999999999999999999999642 245566775
Q ss_pred -cCCCCCCCCccccceEEEechHHHHhhHHHHHHHHHHHHc-cCCcchhhhhchhhhhhccCcEEEcCCcccccCCCCCC
Q 010099 389 -ENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVS-MGEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDY 466 (518)
Q Consensus 389 -~~~~~~~~~yfNsGVlLiNL~~WR~~nit~~~~~~l~~~~-~~~~~~dQd~Ln~~li~f~~~i~~Lp~~WN~~~lg~~~ 466 (518)
..+|+++.||||||||||||++||++++++++++|++++. .+..+||||+||++|++|+|++++||.+||++|+|++.
T Consensus 401 i~~~fd~~~cyfNSGVlLINL~~WRe~nITek~~~~l~~n~~~~l~l~DQdaLp~~livf~g~v~~LD~rWN~~gLgy~~ 480 (533)
T PLN02870 401 IAKNLDPEECAWAYGMNIFDLRAWRKTNIRETYHSWLKENLKSNLTMWKLGTLPPALIAFKGHVHPIDPSWHMLGLGYQS 480 (533)
T ss_pred hhcccCcccceeeccchhccHHHHHHcChHHHHHHHHHhhhhcCceecccccccHhHHHhcCceEECChHHhcCCCCCcc
Confidence 3578899999999999999999999999999999998753 45789999999999999999999999999999999987
Q ss_pred CCCHhhhcCCEEEEecCCCCCcccCCccchHHHHHHHHhhChhhhccccCC
Q 010099 467 GLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVH 517 (518)
Q Consensus 467 ~~~~~~~~~~~IIHY~G~~KPW~~~~~~~y~~~W~~Y~~~s~~fl~~c~~~ 517 (518)
....+.+++|+||||+|++|||++.+.++|+.+|.+|++++++|||+|||+
T Consensus 481 ~~~~~~i~~aaIIHY~G~~KPW~~~~~~~yr~~W~kYl~~s~~fl~~Cni~ 531 (533)
T PLN02870 481 KTNIESVKKAAVIHYNGQSKPWLEIGFEHLRPFWTKYVNYSNDFIRNCHIL 531 (533)
T ss_pred cccccccCCcEEEEECCCCCCccccCccchhHHHHHHHccCchHhhhcCCC
Confidence 666678899999999999999999999999999999999999999999997
No 8
>PLN02867 Probable galacturonosyltransferase
Probab=100.00 E-value=9.3e-106 Score=854.17 Aligned_cols=413 Identities=31% Similarity=0.552 Sum_probs=373.4
Q ss_pred HHHHHHHHHhhcccCCCCCCccHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhHHHHHHHhhHHHHHHHHhhhcC
Q 010099 105 QNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTM 184 (518)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~ 184 (518)
+-.+|++|+|+|++.|+++|+++.++.+.|++++.++++.++||.++++|||||++++||+++++++|++|++||||+|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~am~~~~e~~~~~~~~~~~~~~~laa~t~ 172 (535)
T PLN02867 93 KLREELTRALVEAKEQDDGGRGTKGSTESFNDLVKEMTSNRQDIKAFAFRTKAMLLKMERKVQSARQRESIYWHLASHGI 172 (535)
T ss_pred HHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccchhhhhccHHHhcCCcccccccccC---CCCCCCceEEEEEeCCchhhHHHHHHHHHhcCCCCceEEEEEeCCCCH
Q 010099 185 PKSLHCLSMRLTVEYFKSPSVVMELSQAD---RFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNY 261 (518)
Q Consensus 185 Pk~~hcl~~rl~~ey~~~~~~~~~~~~~~---~l~d~~~ihIv~~sDNvLaasVvI~Sil~n~~~p~~i~FHIltd~is~ 261 (518)
|||||||+||||+|||.+++.++++|+++ +|+||+++|||+|||||||+||||+|++.|+++|+++|||||||.+|+
T Consensus 173 PK~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~VfHvvTD~~ny 252 (535)
T PLN02867 173 PKSLHCLCLKLAEEYAVNAMARSRLPPPESVSRLTDPSFHHVVLLTDNVLAASVVISSTVQNAANPEKLVFHIVTDKKTY 252 (535)
T ss_pred CCCccccchhhHHHHHhCchhhccCCChhhhhhccCCCcceEEEEecceeEEEeeeehhhhcccCccceEEEEecCcccc
Confidence 99999999999999999999999998777 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCceEEEEEeccccc-cchhhHHHhhhccccceec-----------ccccC-CCCCCcCccccccHHH
Q 010099 262 FAMKLWFFRNTFKEATVQVLNIEQLNL-ESHDKAILIHMFLPVEYRV-----------SLLSV-DGPSIHSKMQYISVFS 328 (518)
Q Consensus 262 ~~~~~wf~~~~~~~a~i~v~~i~~f~~-~~~~~~~L~ql~~~~~~~~-----------~f~~~-~~p~~~~r~~ylS~~t 328 (518)
.+|++||++|++++|+|||+++|+|+| ++++++++++++..+.++. +|.+. ..+....+|+|+|+++
T Consensus 253 ~aM~~WF~~n~~~~a~v~V~~~~~f~wl~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkylS~ln 332 (535)
T PLN02867 253 TPMHAWFAINSIKSAVVEVKGLHQYDWSQEVNVGVKEMLEIHRLIWSHYYQNLKESDFQFEGTHKRSLEALSPSCLSLLN 332 (535)
T ss_pred HHHHHHHhhCCCccceEEEEeehhccccccccccHHHHHHHhhhhhhhhhccccccccccccccccchhhcChhhhhHHH
Confidence 999999999999999999999999996 7778888888865432211 12211 1223456799999999
Q ss_pred HHHHhhhhhhccCCeEEEEecCeEEeCCchHHHcccCCCCeeeeeccccc--c---hhhhhhhhc------cCCCCCCCC
Q 010099 329 HLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSV--S---LGQLKSYLG------ENSYDKNSC 397 (518)
Q Consensus 329 y~Rl~iPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~~--~---~~~~~~yl~------~~~~~~~~~ 397 (518)
|+||+||++||+++||||||+||||++||++||++||+|+++|||.|... . .+++.+|++ ..+++++.|
T Consensus 333 YlRflIPeLLP~LdKVLYLD~DVVVqgDLseLwdiDL~gkviaAV~D~~c~~~~~~~~~~~~YlNfsnp~i~~~~~p~~c 412 (535)
T PLN02867 333 HLRIYIPELFPDLNKIVFLDDDVVVQHDLSSLWELDLNGKVVGAVVDSWCGDNCCPGRKYKDYLNFSHPLISSNLDQERC 412 (535)
T ss_pred HHHHHHHHHhhccCeEEEecCCEEEcCchHHHHhCcCCCCeEEEEeccccccccccchhhhhhccccchhhhccCCCCCc
Confidence 99999999999999999999999999999999999999999999987422 1 134566775 346888999
Q ss_pred ccccceEEEechHHHHhhHHHHHHHHHHHHcc-CCcchhhhhchhhhhhccCcEEEcCCcccccCCCCCCCC-CHhhhcC
Q 010099 398 AWMSGLNIVDLARWRELDLTKTYQRLVREVSM-GEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGL-NIEAIKK 475 (518)
Q Consensus 398 yfNsGVlLiNL~~WR~~nit~~~~~~l~~~~~-~~~~~dQd~Ln~~li~f~~~i~~Lp~~WN~~~lg~~~~~-~~~~~~~ 475 (518)
|||||||||||++||++++|+++++|+++... +..++|||+||++|++|+|++++||++||+.|+|++... ..+.+++
T Consensus 413 YFNSGVmLINL~~WRe~nITek~~~~Le~n~~~~~~l~dqd~LN~~LlvF~g~v~~LD~rWNv~gLgy~~~~~~~~~i~~ 492 (535)
T PLN02867 413 AWLYGMNVFDLKAWRRTNITEAYHKWLKLSLNSGLQLWQPGALPPALLAFKGHVHPIDPSWHVAGLGSRPPEVPREILES 492 (535)
T ss_pred ceecceeeeeHHHHHHhcHHHHHHHHHHhchhcccccccccccchHHHHhcCcEEECChhhcccCCCcccccchhhhcCC
Confidence 99999999999999999999999999987543 467899999999999999999999999999999987542 3456789
Q ss_pred CEEEEecCCCCCcccCCccchHHHHHHHHhhChhhhccccCC
Q 010099 476 AAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVH 517 (518)
Q Consensus 476 ~~IIHY~G~~KPW~~~~~~~y~~~W~~Y~~~s~~fl~~c~~~ 517 (518)
|+||||+|+.|||+++++++|+++|.+|++++++|+|+|||.
T Consensus 493 paIIHYnG~~KPW~e~~~~~yR~~W~kyl~~~~~fl~~cni~ 534 (535)
T PLN02867 493 AAVLHFSGPAKPWLEIGFPEVRSLWYRHVNFSDKFIRKCRIM 534 (535)
T ss_pred cEEEEECCCCCcccccCCCchhHHHHHhcCccchHHHhcccC
Confidence 999999999999999999999999999999999999999996
No 9
>PLN02659 Probable galacturonosyltransferase
Probab=100.00 E-value=2.6e-105 Score=847.75 Aligned_cols=395 Identities=33% Similarity=0.599 Sum_probs=358.8
Q ss_pred cccCCCCCCccHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhHHHHHHHhhHHHHHHHHhhhcCCcccchhhhhc
Q 010099 116 ESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRL 195 (518)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rl 195 (518)
|.+.|.++|.++++.+.+| ++.++||.+|++|||||++++||+++++++|+.++.||||+|+|||||||+|||
T Consensus 107 e~~~~~~~~~~~~~~~~~~-------~~~~~d~~~~~~klr~~l~~~E~~~~~~k~~~~~~~~laa~t~PK~lHCL~mrL 179 (534)
T PLN02659 107 ELKGRSDIPQTLEEFMDEV-------KNSRSDARAFALKLREMVTLLEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRL 179 (534)
T ss_pred ccCCccccchHHHHHHHHH-------HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhh
Confidence 6677788888777666555 558999999999999999999999999888886667899999999999999999
Q ss_pred cHHHhcCCcccccccccC---CCCCCCceEEEEEeCCchhhHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHhcc
Q 010099 196 TVEYFKSPSVVMELSQAD---RFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNT 272 (518)
Q Consensus 196 ~~ey~~~~~~~~~~~~~~---~l~d~~~ihIv~~sDNvLaasVvI~Sil~n~~~p~~i~FHIltd~is~~~~~~wf~~~~ 272 (518)
|+|||++++.++++|++| +|+||+++|||+|||||||+||||+|++.|+++|+++|||||||++|+.+|++||++|+
T Consensus 180 t~ey~~~~~~~~~~~~~~~~~~l~d~~l~Hy~ifSdNvLAasVVvnStv~~a~~p~~~VFHivTD~~ny~aM~~WF~~n~ 259 (534)
T PLN02659 180 ANEHSTNAAARLQLPLAELVPALVDNSYFHFVLASDNILAASVVANSLVQNALRPHKFVLHIITDRKTYSPMQAWFSLHP 259 (534)
T ss_pred HHHHHhCchhhhccCCcccccccCCCCcceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccccHHHHHHHhhCC
Confidence 999999999999988777 79999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeccccc-cchhhHHHhhhccccceecccccCC---------CCC------CcCccccccHHHHHHHhhhh
Q 010099 273 FKEATVQVLNIEQLNL-ESHDKAILIHMFLPVEYRVSLLSVD---------GPS------IHSKMQYISVFSHLHYLLPE 336 (518)
Q Consensus 273 ~~~a~i~v~~i~~f~~-~~~~~~~L~ql~~~~~~~~~f~~~~---------~p~------~~~r~~ylS~~ty~Rl~iPe 336 (518)
+++|+|||+++|+|+| +++++++++|+++..+++.+|+++. .|. .+.+|+|+|+++|+||+||+
T Consensus 260 ~~~a~v~V~~~e~f~wl~~~~~pvl~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ylS~~nY~RL~IPe 339 (534)
T PLN02659 260 LSPAIIEVKALHHFDWFAKGKVPVLEAMEKDQRVRSQFRGGSSAIVANNTEKPHVIAAKLQALSPKYNSVMNHIRIHLPE 339 (534)
T ss_pred CccceEEEEeehhcccccccccHHHHHHhhhhhhhhhhcccccccccccccCccccccccccCCccceeHHHHHHHHHHH
Confidence 9999999999999996 8889999999999888888886332 221 23579999999999999999
Q ss_pred hhccCCeEEEEecCeEEeCCchHHHcccCCCCeeeeecccccc--h---hhhhhhhc------cCCCCCCCCccccceEE
Q 010099 337 IFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVS--L---GQLKSYLG------ENSYDKNSCAWMSGLNI 405 (518)
Q Consensus 337 llP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~~~--~---~~~~~yl~------~~~~~~~~~yfNsGVlL 405 (518)
+||+++||||||+||||++||++||++||+|+++|||+||... + +++.+|++ ...|+++.||||+||||
T Consensus 340 LLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkv~AAVeDc~~~d~~~~~~~~~~yL~~s~p~i~~yFn~~~cYfNsGVlL 419 (534)
T PLN02659 340 LFPSLNKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLNFSHPLIAKNFDPNECAWAYGMNI 419 (534)
T ss_pred HhhhcCeEEEeeCCEEEcCchHHHHhCCCCCcEEEEeeccccccchhhhHHHHHhhcccchhhhhccCccccceecceeE
Confidence 9999999999999999999999999999999999999999532 1 44555554 23577889999999999
Q ss_pred EechHHHHhhHHHHHHHHHHHHc-cCCcchhhhhchhhhhhccCcEEEcCCcccccCCCCCCCCCHhhhcCCEEEEecCC
Q 010099 406 VDLARWRELDLTKTYQRLVREVS-MGEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGN 484 (518)
Q Consensus 406 iNL~~WR~~nit~~~~~~l~~~~-~~~~~~dQd~Ln~~li~f~~~i~~Lp~~WN~~~lg~~~~~~~~~~~~~~IIHY~G~ 484 (518)
|||++||++++|+++++|++++. .+..+||||+||++|++|+|++++||.+||+.++|++.....+.+++|+||||+|+
T Consensus 420 INLk~WRe~nITek~l~~l~~n~~~~l~l~DQdaLp~~LivF~g~v~~LD~rWN~~gLg~~~~~~~~~i~~paIIHYnG~ 499 (534)
T PLN02659 420 FDLEAWRKTNISSTYHHWLEENLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSLADAESAGVVHFNGR 499 (534)
T ss_pred eeHHHHHhcChHHHHHHHHHhcccccccccccccchHHHHHhcCCEEECChhheecCCcccccccccccCCcEEEEECCC
Confidence 99999999999999999998754 45789999999999999999999999999999999987655667899999999999
Q ss_pred CCCcccCCccchHHHHHHHHhhChhhhccccCC
Q 010099 485 MKPWLELGIPRYKKFWKKFLNQEDQLLSECNVH 517 (518)
Q Consensus 485 ~KPW~~~~~~~y~~~W~~Y~~~s~~fl~~c~~~ 517 (518)
+|||+.+++++|+++|.+|++++++|||+|||+
T Consensus 500 ~KPW~~~~~~~yr~~W~kYl~~s~~fl~~Cni~ 532 (534)
T PLN02659 500 AKPWLDIAFPQLRPLWAKYIDSSDKFIKSCHIR 532 (534)
T ss_pred CCccccccCCcchhHHHHHhccCCHHHHhcCCC
Confidence 999999999999999999999999999999996
No 10
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=100.00 E-value=5.9e-55 Score=437.01 Aligned_cols=255 Identities=43% Similarity=0.766 Sum_probs=217.7
Q ss_pred eEEEEEeCCchhhHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEeccccccch-hhHHHhhh
Q 010099 221 HHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESH-DKAILIHM 299 (518)
Q Consensus 221 ihIv~~sDNvLaasVvI~Sil~n~~~p~~i~FHIltd~is~~~~~~wf~~~~~~~a~i~v~~i~~f~~~~~-~~~~L~ql 299 (518)
+|||+++||+++++|++.|++.|+++|.+++|||+||+++.+.++.|+...+..+++|++++++++.+... ...+++|+
T Consensus 1 ~hiv~~~Dn~l~~~v~i~S~l~nn~~~~~~~fhvvtd~~s~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 80 (257)
T cd06429 1 IHVVIFSDNRLAAAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKVLNFDDFKLLGKVKVDSLMQL 80 (257)
T ss_pred CCEEEEecchhHHHHHHHHHHHhCCCCCceEEEEecCccCHHHHHHHHHhcCCCCceEEEEEeCcHHhhcccccchhhhh
Confidence 69999999999999999999999999899999999999999999999999888899999999988765322 22355555
Q ss_pred ccccceecccccCCCCCCcCccccccHHHHHHHhhhhhhccCCeEEEEecCeEEeCCchHHHcccCCCCeeeeecccccc
Q 010099 300 FLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVS 379 (518)
Q Consensus 300 ~~~~~~~~~f~~~~~p~~~~r~~ylS~~ty~Rl~iPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~~~ 379 (518)
....+ .......+++++|.++|+||+||++||+++||||||+|+||++||++||++||+|+++|||+|
T Consensus 81 ~~~~~--------~~~~~~~~~~~~s~~~y~Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav~d---- 148 (257)
T cd06429 81 ESEAD--------TSNLKQRKPEYISLLNFARFYLPELFPKLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAVET---- 148 (257)
T ss_pred hcccc--------ccccccCCccccCHHHHHHHHHHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEEEhh----
Confidence 43220 111123357899999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhhhhccCCCCCCCCccccceEEEechHHHHhhHHHHHHHHHHHHccC-CcchhhhhchhhhhhccCcEEEcCCccc
Q 010099 380 LGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMG-EESKEAVALRGSLLTFQDLVYALDGVWA 458 (518)
Q Consensus 380 ~~~~~~yl~~~~~~~~~~yfNsGVlLiNL~~WR~~nit~~~~~~l~~~~~~-~~~~dQd~Ln~~li~f~~~i~~Lp~~WN 458 (518)
|||||||||||++||++++++++++|+++.... ..++++|.+++.+++|.|++..||.+||
T Consensus 149 ------------------yfNsGV~linl~~wr~~~i~~~~~~~~~~~~~~~~~~~~~~dqd~ln~~~~~~~~~L~~~wN 210 (257)
T cd06429 149 ------------------SWNPGVNVVNLTEWRRQNVTETYEKWMELNQEEEVTLWKLITLPPGLIVFYGLTSPLDPSWH 210 (257)
T ss_pred ------------------hcccceEEEeHHHHHhccHHHHHHHHHHHhhhcccchhhcCCccHHHHHccCeeEECChHHc
Confidence 799999999999999999999999999876543 3556655555555899999999999999
Q ss_pred ccCCCCCCCCCHhhhcCCEEEEecCCCCCcccCCccchHHHHHHHHh
Q 010099 459 LSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLN 505 (518)
Q Consensus 459 ~~~lg~~~~~~~~~~~~~~IIHY~G~~KPW~~~~~~~y~~~W~~Y~~ 505 (518)
++++|++.....+.+++|+||||+|+.|||+..+.++|+++||+|++
T Consensus 211 ~~~l~~~~~~~~~~~~~~~IIHy~G~~KPW~~~~~~~~~~~w~~yl~ 257 (257)
T cd06429 211 VRGLGYNYGIRPQDIKAAAVLHFNGNMKPWLRTAIPSYKELWEKYLS 257 (257)
T ss_pred ccCCcccccccccccCCcEEEEECCCCCCcCCCCCChHHHHHHHHhC
Confidence 99888875444456779999999999999999998999999999974
No 11
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=6.6e-45 Score=377.25 Aligned_cols=258 Identities=16% Similarity=0.230 Sum_probs=193.9
Q ss_pred CCceEEEE-EeCCchh-hHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHH-HHHhccCCCceEEEEEeccccccchhhH
Q 010099 218 PSLHHYVI-FSTNVLA-SSVVINSTVLCARESKNQVFHVLTDGQNYFAMKL-WFFRNTFKEATVQVLNIEQLNLESHDKA 294 (518)
Q Consensus 218 ~~~ihIv~-~sDNvLa-asVvI~Sil~n~~~p~~i~FHIltd~is~~~~~~-wf~~~~~~~a~i~v~~i~~f~~~~~~~~ 294 (518)
++.+|||+ +|+|++. ++|+|+|++.|+++ ..++|||++++++.+.++. ..+...+ +..|.++.++.-.
T Consensus 23 ~~~i~Iv~~~D~ny~~~~~vsi~Sil~nn~~-~~~~f~Il~~~is~e~~~~l~~l~~~~-~~~i~~~~id~~~------- 93 (334)
T PRK15171 23 KNSLDIAYGIDKNFLFGCGVSIASVLLNNPD-KSLVFHVFTDYISDADKQRFSALAKQY-NTRINIYLINCER------- 93 (334)
T ss_pred CCceeEEEECcHhhHHHHHHHHHHHHHhCCC-CCEEEEEEeCCCCHHHHHHHHHHHHhc-CCeEEEEEeCHHH-------
Confidence 46799999 6667765 67999999999765 4799999999999887653 2333444 3456666553211
Q ss_pred HHhhhccccceecccccCCCCCCcCccccccHHHHHHHhhhhhhc-cCCeEEEEecCeEEeCCchHHHcccCCCCeeeee
Q 010099 295 ILIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQ-SLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAV 373 (518)
Q Consensus 295 ~L~ql~~~~~~~~~f~~~~~p~~~~r~~ylS~~ty~Rl~iPellP-~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV 373 (518)
+. ..|. ..++|.++|+||+||++|| +++||||||+|+||++||++||++||+|..+|||
T Consensus 94 -~~---------------~~~~----~~~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~~dl~~~~~aav 153 (334)
T PRK15171 94 -LK---------------SLPS----TKNWTYATYFRFIIADYFIDKTDKVLYLDADIACKGSIKELIDLDFAENEIAAV 153 (334)
T ss_pred -Hh---------------CCcc----cCcCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHhccCCCCeEEEE
Confidence 10 1121 2478999999999999999 6999999999999999999999999996656665
Q ss_pred -cccccchhhhhhhhccCCCCC-CCCccccceEEEechHHHHhhHHHHHHHHHHHH--ccCCcchhhhhchhhhhhccCc
Q 010099 374 -QSCSVSLGQLKSYLGENSYDK-NSCAWMSGLNIVDLARWRELDLTKTYQRLVREV--SMGEESKEAVALRGSLLTFQDL 449 (518)
Q Consensus 374 -~d~~~~~~~~~~yl~~~~~~~-~~~yfNsGVlLiNL~~WR~~nit~~~~~~l~~~--~~~~~~~dQd~Ln~~li~f~~~ 449 (518)
.|+...+ +.+.....+... ...|||||||||||++||++++++++++++.+. .....++|||+|| ++|.|+
T Consensus 154 ~~d~~~~~--~~~~~~~l~~~~~~~~YFNsGVlliNl~~wRe~~i~~k~~~~l~~~~~~~~~~~~DQDiLN---~~~~~~ 228 (334)
T PRK15171 154 VAEGDAEW--WSKRAQSLQTPGLASGYFNSGFLLINIPAWAQENISAKAIEMLADPEIVSRITHLDQDVLN---ILLAGK 228 (334)
T ss_pred EeccchhH--HHHHHHhcCCccccccceecceEEEcHHHHHHhhHHHHHHHHHhccccccceeecChhHHH---HHHcCC
Confidence 5543311 111111222221 246999999999999999999999999998763 2456789999999 689999
Q ss_pred EEEcCCccccc-CCCCCC--CCCHhhhcCCEEEEecCCCCCcccCCccchHHHHHHHHhhChh
Q 010099 450 VYALDGVWALS-GLGHDY--GLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQ 509 (518)
Q Consensus 450 i~~Lp~~WN~~-~lg~~~--~~~~~~~~~~~IIHY~G~~KPW~~~~~~~y~~~W~~Y~~~s~~ 509 (518)
++.||.+||++ ++.+.. .......++|+||||+|+.|||+..+.++++++||+|++.++.
T Consensus 229 ~~~L~~~wN~~~~~~~~~~~~~~~~~~~~p~IIHy~G~~KPW~~~~~~~~~~~f~~~~~~spw 291 (334)
T PRK15171 229 VKFIDAKYNTQFSLNYELKDSVINPVNDETVFIHYIGPTKPWHSWADYPVSQYFLKAKEASPW 291 (334)
T ss_pred eEECCHhhCCccchhHHHHhcccccccCCCEEEEECCCCCCCCCCCCCchHHHHHHHHhcCCC
Confidence 99999999987 322111 0111224689999999999999988889999999999998864
No 12
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=100.00 E-value=1.7e-42 Score=351.10 Aligned_cols=256 Identities=20% Similarity=0.307 Sum_probs=188.8
Q ss_pred EEEEeCCc-hhhHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEeccccccchhhHHHhhhcc
Q 010099 223 YVIFSTNV-LASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFL 301 (518)
Q Consensus 223 Iv~~sDNv-LaasVvI~Sil~n~~~p~~i~FHIltd~is~~~~~~wf~~~~~~~a~i~v~~i~~f~~~~~~~~~L~ql~~ 301 (518)
||++.+|| ..++|+|+|++.|+. ..++|||++++++.+..+.........++.|.++.++++. + .+
T Consensus 5 iv~~~~~y~~~~~~~i~Sil~n~~--~~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~~~~--~----~~----- 71 (280)
T cd06431 5 IVCAGYNASRDVVTLVKSVLFYRR--NPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELK--S----RV----- 71 (280)
T ss_pred EEEccCCcHHHHHHHHHHHHHcCC--CCEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhHHhh--h----hh-----
Confidence 45555786 557899999999985 4699999999999888664333323347788888875322 0 00
Q ss_pred ccceecccccCCCCCCcCcccccc-HHHHHHHhhhhhhc-cCCeEEEEecCeEEeCCchHHHcc--cCCC-Ceeeeeccc
Q 010099 302 PVEYRVSLLSVDGPSIHSKMQYIS-VFSHLHYLLPEIFQ-SLTKVVVLDDDVVVQKDLSALWDI--NMGG-KVNGAVQSC 376 (518)
Q Consensus 302 ~~~~~~~f~~~~~p~~~~r~~ylS-~~ty~Rl~iPellP-~ldKVLYLD~DvVV~~DLseLw~i--DL~g-~~igAV~d~ 376 (518)
. ..| ..++| .++|+||+||++|| +++||||||+|+||++||++||++ |+.| +++|||++.
T Consensus 72 --------~--~~~-----~~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~~~~a~v~~~ 136 (280)
T cd06431 72 --------S--WIP-----NKHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQ 136 (280)
T ss_pred --------c--cCc-----ccchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCCcEEEEeccc
Confidence 0 001 12344 44889999999999 799999999999999999999998 6765 577777775
Q ss_pred ccchhhhhhhhc--cCCCCCCCCccccceEEEechHHHHhhHHHHHHHHHHHH---ccCCcchhhhhchhhhhhccCc--
Q 010099 377 SVSLGQLKSYLG--ENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREV---SMGEESKEAVALRGSLLTFQDL-- 449 (518)
Q Consensus 377 ~~~~~~~~~yl~--~~~~~~~~~yfNsGVlLiNL~~WR~~nit~~~~~~l~~~---~~~~~~~dQd~Ln~~li~f~~~-- 449 (518)
... +..... ...+.....|||||||||||++||++++++++..+.++. .....++|||+|| ++|.++
T Consensus 137 ~~~---~~~~~~~~~~~~~~~~~yFNsGVmlinL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~DQDiLN---~v~~~~~~ 210 (280)
T cd06431 137 SDW---YLGNLWKNHRPWPALGRGFNTGVILLDLDKLRKMKWESMWRLTAERELMSMLSTSLADQDIFN---AVIKQNPF 210 (280)
T ss_pred hhh---hhhhhhhccCCCcccccceeeeeeeeeHHHHHhhCHHHHHHHHHHHHHhhcCCCCcCcHHHHH---HHHcCCcc
Confidence 321 111110 011122235999999999999999999999988766553 2346789999999 588999
Q ss_pred -EEEcCCcccccCCCCCCCCC--HhhhcCCEEEEecCCCCCcccCCc-cchHHHHHHHHhhChhhhcc
Q 010099 450 -VYALDGVWALSGLGHDYGLN--IEAIKKAAVLHYNGNMKPWLELGI-PRYKKFWKKFLNQEDQLLSE 513 (518)
Q Consensus 450 -i~~Lp~~WN~~~lg~~~~~~--~~~~~~~~IIHY~G~~KPW~~~~~-~~y~~~W~~Y~~~s~~fl~~ 513 (518)
++.||.+||++. +...... ....++|+||||+|+.|||...+. ++|+++|.+|+++++.-||+
T Consensus 211 ~~~~L~~~wN~~~-~~~~~~~~~~~~~~~p~IIHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (280)
T cd06431 211 LVYQLPCAWNVQL-SDHTRSEQCYRDVSDLKVIHWNSPKKLRVKNKHVEFFRNLYLTFLEYDGNLLRR 277 (280)
T ss_pred eeEECCCcccccc-CccchHhHhhcCcCCCEEEEeCCCCCCCCcCCCChHHHHHHHHHHhcCchhhhh
Confidence 899999999983 2221100 122468999999999999998875 89999999999999988876
No 13
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=100.00 E-value=3.3e-41 Score=334.41 Aligned_cols=237 Identities=22% Similarity=0.263 Sum_probs=181.5
Q ss_pred eEEEE-EeC-Cchh-hHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEeccccccchhhHHHh
Q 010099 221 HHYVI-FST-NVLA-SSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILI 297 (518)
Q Consensus 221 ihIv~-~sD-NvLa-asVvI~Sil~n~~~p~~i~FHIltd~is~~~~~~wf~~~~~~~a~i~v~~i~~f~~~~~~~~~L~ 297 (518)
||||+ ++| ||+. ++|+|+|+++|+++ .++|||++++++.+..+.........+..++++.++.-.+.
T Consensus 1 ~~i~~~a~d~~y~~~~~v~i~Sl~~~~~~--~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~-------- 70 (246)
T cd00505 1 IAIVIVATGDEYLRGAIVLMKSVLRHRTK--PLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSV-------- 70 (246)
T ss_pred CeEEEEecCcchhHHHHHHHHHHHHhCCC--CeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccCcc--------
Confidence 68888 777 6665 67999999999876 79999999999987765322222223567888876422110
Q ss_pred hhccccceecccccCCCCCCcCccccccHHHHHHHhhhhhhccCCeEEEEecCeEEeCCchHHHcccCCCCeeeeecccc
Q 010099 298 HMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCS 377 (518)
Q Consensus 298 ql~~~~~~~~~f~~~~~p~~~~r~~ylS~~ty~Rl~iPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~ 377 (518)
..+. ..++++..+|+||+||++||+++||||||+|+||++||++||++|++|+++|||+||.
T Consensus 71 ---------------~~~~---~~~~~~~~~y~RL~i~~llp~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~ 132 (246)
T cd00505 71 ---------------DSEH---LKRPIKIVTLTKLHLPNLVPDYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPG 132 (246)
T ss_pred ---------------hhhh---hcCccccceeHHHHHHHHhhccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCch
Confidence 0000 0246789999999999999999999999999999999999999999999999999987
Q ss_pred cchhhhhhhhccCCCCCCCCccccceEEEechHHHHhhHHHHHHHHHHHHccCCcchhhhhchhhhhhccCc---EEEcC
Q 010099 378 VSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDL---VYALD 454 (518)
Q Consensus 378 ~~~~~~~~yl~~~~~~~~~~yfNsGVlLiNL~~WR~~nit~~~~~~l~~~~~~~~~~dQd~Ln~~li~f~~~---i~~Lp 454 (518)
.... ...+-...++..+.+|||||||||||++||++++.++..+++.+......+.|||+|| .+|.++ +..||
T Consensus 133 ~~~~-~~~~~~~~~~~~~~~yfNsGVmlinl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN---~~~~~~~~~i~~L~ 208 (246)
T cd00505 133 DRRE-GKYYRQKRSHLAGPDYFNSGVFVVNLSKERRNQLLKVALEKWLQSLSSLSGGDQDLLN---TFFKQVPFIVKSLP 208 (246)
T ss_pred hhhc-cchhhcccCCCCCCCceeeeeEEEechHHHHHHHHHHHHHHHHhhcccCccCCcHHHH---HHHhcCCCeEEECC
Confidence 4211 0011112344456689999999999999998888888887766655567889999999 588998 99999
Q ss_pred CcccccCCCCCCC--CCHhhhcCCEEEEecCCCCCcc
Q 010099 455 GVWALSGLGHDYG--LNIEAIKKAAVLHYNGNMKPWL 489 (518)
Q Consensus 455 ~~WN~~~lg~~~~--~~~~~~~~~~IIHY~G~~KPW~ 489 (518)
.+||++..++... ...+..++|+||||+|+.|||.
T Consensus 209 ~~wN~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~ 245 (246)
T cd00505 209 CIWNVRLTGCYRSLNCFKAFVKNAKVIHFNGPTKPWN 245 (246)
T ss_pred CeeeEEecCccccccchhhhcCCCEEEEeCCCCCCCC
Confidence 9999985443322 1234678999999999999996
No 14
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=100.00 E-value=6.8e-40 Score=324.38 Aligned_cols=236 Identities=22% Similarity=0.294 Sum_probs=183.1
Q ss_pred eEEEE-EeCCchh-hHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHH-HHHhccCCCceEEEEEeccccccchhhHHHh
Q 010099 221 HHYVI-FSTNVLA-SSVVINSTVLCARESKNQVFHVLTDGQNYFAMKL-WFFRNTFKEATVQVLNIEQLNLESHDKAILI 297 (518)
Q Consensus 221 ihIv~-~sDNvLa-asVvI~Sil~n~~~p~~i~FHIltd~is~~~~~~-wf~~~~~~~a~i~v~~i~~f~~~~~~~~~L~ 297 (518)
+|||+ ++++++. ++|+++|+++|+++ +.++|||++++++.+..+. .-.... .+..|+++.++.-. +.
T Consensus 1 ~~I~~~~d~~y~~~~~~~l~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~-~~~~i~~~~i~~~~--------~~ 70 (248)
T cd04194 1 MNIVFAIDDNYAPYLAVTIKSILANNSK-RDYDFYILNDDISEENKKKLKELLKK-YNSSIEFIKIDNDD--------FK 70 (248)
T ss_pred CCEEEEecHhhHHHHHHHHHHHHhcCCC-CceEEEEEeCCCCHHHHHHHHHHHHh-cCCeEEEEEcCHHH--------Hh
Confidence 69999 5556765 57999999999986 5799999999998877552 111111 35677777664211 10
Q ss_pred hhccccceecccccCCCCCCcCccccccHHHHHHHhhhhhhccCCeEEEEecCeEEeCCchHHHcccCCCCeeeeecccc
Q 010099 298 HMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCS 377 (518)
Q Consensus 298 ql~~~~~~~~~f~~~~~p~~~~r~~ylS~~ty~Rl~iPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~ 377 (518)
..+ . ...+++..+|+||++|+++|+++||||||+|+||++||++||++|++|+++|||+||.
T Consensus 71 ---------------~~~--~-~~~~~~~~~y~rl~l~~ll~~~~rvlylD~D~lv~~di~~L~~~~~~~~~~aa~~d~~ 132 (248)
T cd04194 71 ---------------FFP--A-TTDHISYATYYRLLIPDLLPDYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVRDPF 132 (248)
T ss_pred ---------------cCC--c-ccccccHHHHHHHHHHHHhcccCEEEEEeCCEEecCCHHHHhcCCcCCCEEEEEeccc
Confidence 000 0 1346789999999999999999999999999999999999999999999999999987
Q ss_pred cchhhhhhhhccCCCCCCCCccccceEEEechHHHHhhHHHHHHHHHHHHccCCcchhhhhchhhhhhccCcEEEcCCcc
Q 010099 378 VSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDGVW 457 (518)
Q Consensus 378 ~~~~~~~~yl~~~~~~~~~~yfNsGVlLiNL~~WR~~nit~~~~~~l~~~~~~~~~~dQd~Ln~~li~f~~~i~~Lp~~W 457 (518)
........ ...+.....+||||||||+|+++||+.++++++++++++......+.|||+|| .+|.+++..||.+|
T Consensus 133 ~~~~~~~~--~~~~~~~~~~yfNsGv~l~nl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN---~~~~~~~~~L~~~~ 207 (248)
T cd04194 133 IEQEKKRK--RRLGGYDDGSYFNSGVLLINLKKWREENITEKLLELIKEYGGRLIYPDQDILN---AVLKDKILYLPPRY 207 (248)
T ss_pred HHHHHHHH--hhcCCCcccceeeecchheeHHHHHHhhhHHHHHHHHHhCCCceeeCChHHHH---HHHhCCeEEcCccc
Confidence 64221111 12234456789999999999999999999999999998866557889999999 69999999999999
Q ss_pred cccCCCCCCC--------CCHhhhcCCEEEEecCCCCCcc
Q 010099 458 ALSGLGHDYG--------LNIEAIKKAAVLHYNGNMKPWL 489 (518)
Q Consensus 458 N~~~lg~~~~--------~~~~~~~~~~IIHY~G~~KPW~ 489 (518)
|++...+... ......++++||||+|..|||.
T Consensus 208 N~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHf~g~~KPW~ 247 (248)
T cd04194 208 NFQTGFYYLLKKKSKEEQELEEARKNPVIIHYTGSDKPWN 247 (248)
T ss_pred ccchhHhHHhhccchhHHHHHHHhcCCEEEEeCCCCCCCC
Confidence 9984322211 0134678999999999999997
No 15
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=8.8e-40 Score=335.80 Aligned_cols=255 Identities=23% Similarity=0.286 Sum_probs=200.2
Q ss_pred ceEEEE-EeCCch-hhHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHH-HHHHhccCC-CceEEEEEeccccccchhhHH
Q 010099 220 LHHYVI-FSTNVL-ASSVVINSTVLCARESKNQVFHVLTDGQNYFAMK-LWFFRNTFK-EATVQVLNIEQLNLESHDKAI 295 (518)
Q Consensus 220 ~ihIv~-~sDNvL-aasVvI~Sil~n~~~p~~i~FHIltd~is~~~~~-~wf~~~~~~-~a~i~v~~i~~f~~~~~~~~~ 295 (518)
.++||+ +|+||+ +++|+|.|++.|++. -.+.|||++++++.+.++ +.-...+++ .+.+.+++++.+.
T Consensus 2 ~~~Iv~a~D~nY~~~~gvsI~SiL~~n~~-~~~~fhil~~~i~~e~~~~l~~~~~~f~~~i~~~~id~~~~~-------- 72 (325)
T COG1442 2 TIPIAFAFDKNYLIPAGVSIYSLLEHNRK-IFYKFHILVDGLNEEDKKKLNETAEPFKSFIVLEVIDIEPFL-------- 72 (325)
T ss_pred cccEEEEcccccchhHHHHHHHHHHhCcc-ccEEEEEEecCCCHHHHHHHHHHHHhhccceeeEEEechhhh--------
Confidence 478999 666765 678999999999985 479999999999999876 355566776 5677777776543
Q ss_pred HhhhccccceecccccCCCCCCcCccccccHHHHHHHhhhhhhccCCeEEEEecCeEEeCCchHHHcccCCCCeeeeecc
Q 010099 296 LIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQS 375 (518)
Q Consensus 296 L~ql~~~~~~~~~f~~~~~p~~~~r~~ylS~~ty~Rl~iPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d 375 (518)
+.|. .++++|.++|+||+||++||+++|+||||+|+||++||++||.+|++|+++|||.|
T Consensus 73 -----------------~~~~---~~~~~s~~v~~R~fiadlf~~~dK~lylD~Dvi~~g~l~~lf~~~~~~~~~aaV~D 132 (325)
T COG1442 73 -----------------DYPP---FTKRFSKMVLVRYFLADLFPQYDKMLYLDVDVIFCGDLSELFFIDLEEYYLAAVRD 132 (325)
T ss_pred -----------------cccc---cccchHHHHHHHHHHHHhccccCeEEEEecCEEEcCcHHHHHhcCCCcceEEEEee
Confidence 1110 13568899999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhhccC-CCCCCCCccccceEEEechHHHHhhHHHHHHHHHHHHccCCcchhhhhchhhhhhccCcEEEcC
Q 010099 376 CSVSLGQLKSYLGEN-SYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALD 454 (518)
Q Consensus 376 ~~~~~~~~~~yl~~~-~~~~~~~yfNsGVlLiNL~~WR~~nit~~~~~~l~~~~~~~~~~dQd~Ln~~li~f~~~i~~Lp 454 (518)
+...... .-..+. .......|||+|||++|++.||++++++++++++++...+..++|||+|| ++|++++.+||
T Consensus 133 ~~~~~~~--~~~~~~~~~~~~~~yFNaG~llinl~~W~~~~i~~k~i~~~~~~~~~~~~~DQdiLN---~i~~~~~~~L~ 207 (325)
T COG1442 133 VFSHYMK--EGALRLEKGDLEGSYFNAGVLLINLKLWREENIFEKLIELLKDKENDLLYPDQDILN---MIFEDRVLELP 207 (325)
T ss_pred hhhhhhh--hhhhHhhhcccccccCccceeeehHHHHHHhhhHHHHHHHHhccccccCCccccHHH---HHHHhhhhccC
Confidence 8653110 001000 11224579999999999999999999999999987766778899999999 69999999999
Q ss_pred CcccccCC-CCCCC--CCHhhhcCCEEEEecCCCCCcccCCccch-HHHHHHHHhhCh
Q 010099 455 GVWALSGL-GHDYG--LNIEAIKKAAVLHYNGNMKPWLELGIPRY-KKFWKKFLNQED 508 (518)
Q Consensus 455 ~~WN~~~l-g~~~~--~~~~~~~~~~IIHY~G~~KPW~~~~~~~y-~~~W~~Y~~~s~ 508 (518)
.+||++.. ..... +......+|.|+||+|+.|||...+.+.+ ..+|...+..++
T Consensus 208 ~~YN~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~~w~~i~~~~p 265 (325)
T COG1442 208 IRYNAIPYIDSQLKDKYIYPFGDDPVILHYAGPTKPWHSDSSNYPRSHEWHEILAETP 265 (325)
T ss_pred cccceeehhhhccchhhhccCCCCceEEEecCCCCCCcCccccccHHHHHHHHHhcCC
Confidence 99999832 11111 11334578999999999999999986655 477777766554
No 16
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=100.00 E-value=1.5e-35 Score=288.16 Aligned_cols=243 Identities=18% Similarity=0.272 Sum_probs=162.5
Q ss_pred EEEE-EeCCchh-hHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHH-HHhccCCCceEEEEEeccccccchhhHHHhh
Q 010099 222 HYVI-FSTNVLA-SSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLW-FFRNTFKEATVQVLNIEQLNLESHDKAILIH 298 (518)
Q Consensus 222 hIv~-~sDNvLa-asVvI~Sil~n~~~p~~i~FHIltd~is~~~~~~w-f~~~~~~~a~i~v~~i~~f~~~~~~~~~L~q 298 (518)
|||+ +++||+. ++|+|+|+++|++++..++|||++++++.+..+.. .....+. .+..+...+.. .+..
T Consensus 1 ~i~~~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~-------~~~~ 71 (250)
T PF01501_consen 1 HIVLACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVI--EIEPIEFPDIS-------MLEE 71 (250)
T ss_dssp -EEEECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCC--TTECEEETSGG-------HHH-
T ss_pred CEEEEeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhccccc--ceeeeccchHH-------hhhh
Confidence 7899 5556764 67999999999998778999999999988776531 1122221 11111111100 0000
Q ss_pred hccccceecccccCCCCCCcCccccccHHHHHHHhhhhhhccCCeEEEEecCeEEeCCchHHHcccCCCCeeeeeccccc
Q 010099 299 MFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSV 378 (518)
Q Consensus 299 l~~~~~~~~~f~~~~~p~~~~r~~ylS~~ty~Rl~iPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~~ 378 (518)
. +.......+++..+|+||+++++||+++||||||+||||.+||++||+++++|+.+||++|+..
T Consensus 72 ~---------------~~~~~~~~~~~~~~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~~~~ 136 (250)
T PF01501_consen 72 F---------------QFNSPSKRHFSPATFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVEDESF 136 (250)
T ss_dssp ----------------TTS-HCCTCGGGGGGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE----
T ss_pred h---------------hhcccccccccHHHHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccchhhhccccccchh
Confidence 0 0011123578899999999999999999999999999999999999999999999999999322
Q ss_pred chh-hhhhhhccCCCCCCCCccccceEEEechHHHHhhHHHHHHHHHHHHccCCcchhhhhchhhhhhccCcEEEcCCcc
Q 010099 379 SLG-QLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDGVW 457 (518)
Q Consensus 379 ~~~-~~~~yl~~~~~~~~~~yfNsGVlLiNL~~WR~~nit~~~~~~l~~~~~~~~~~dQd~Ln~~li~f~~~i~~Lp~~W 457 (518)
... ...............+|||+||||+|+++||++++.+++..+++.......+.||++|| ++|.+++..||.+|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DQ~~ln---~~~~~~~~~L~~~~ 213 (250)
T PF01501_consen 137 DNFPNKRFPFSERKQPGNKPYFNSGVMLFNPSKWRKENILQKLIEWLEQNGMKLGFPDQDILN---IVFYGNIKPLPCRY 213 (250)
T ss_dssp HHHHTSTTSSEEECESTTTTSEEEEEEEEEHHHHHHHHHHHHHHHHHHHTTTT-SSCHHHHHH---HHHTTGEEEEEGGG
T ss_pred hhhhhcccchhhcccCcccccccCcEEEEeechhhhhhhhhhhhhhhhhcccccCcCchHHHh---hhccceeEEECchh
Confidence 100 00011111122345789999999999999999999999999977755557789999998 68999999999999
Q ss_pred cccCCCCCC--CCCHhhhcCCEEEEecCCCCCcccC
Q 010099 458 ALSGLGHDY--GLNIEAIKKAAVLHYNGNMKPWLEL 491 (518)
Q Consensus 458 N~~~lg~~~--~~~~~~~~~~~IIHY~G~~KPW~~~ 491 (518)
|++..++.. .......++++||||+|..|||...
T Consensus 214 N~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~ 249 (250)
T PF01501_consen 214 NCQPSWYNQSDDYFNPILEDAKIIHYSGPPKPWKST 249 (250)
T ss_dssp SEEHHHHHHTHHHHHHHGCC-SEEE--SSS-TTSTT
T ss_pred ccccccccccchhhHhhcCCeEEEEeCCCCcCCCCC
Confidence 999443310 1113456899999999999999865
No 17
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=100.00 E-value=1.4e-33 Score=287.20 Aligned_cols=254 Identities=12% Similarity=0.229 Sum_probs=173.4
Q ss_pred eEEEE-EeC-CchhhHHHHHHHHHhcCCCCceEEEEEeCC-CCHHHHH---HHHHhccCCCceEEEEEeccccccchhhH
Q 010099 221 HHYVI-FST-NVLASSVVINSTVLCARESKNQVFHVLTDG-QNYFAMK---LWFFRNTFKEATVQVLNIEQLNLESHDKA 294 (518)
Q Consensus 221 ihIv~-~sD-NvLaasVvI~Sil~n~~~p~~i~FHIltd~-is~~~~~---~wf~~~~~~~a~i~v~~i~~f~~~~~~~~ 294 (518)
+|+|+ +++ +.-.+-|+|+|++.|+. ..++|||++|+ ...+.++ .|-.... ......+..+ .|
T Consensus 1 ~~~~vv~~g~~~~~~~~~lkSil~~n~--~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~-~~i~~~i~~I---~~------ 68 (304)
T cd06430 1 MHLAVVACGERLEETLTMLKSAIVFSQ--KPLRFHIFAEDQLKQSFKEKLDDWPELID-RKFNYTLHPI---TF------ 68 (304)
T ss_pred CEEEEEEcCCcHHHHHHHHHHHHHhCC--CCEEEEEEECCccCHHHHHHHHHHHHhcc-ceeeeEEEEE---ec------
Confidence 57777 444 44346689999999985 57999999998 4444432 2321110 1111122222 11
Q ss_pred HHhhhccccceecccccCCCCCCcCccccccHHHHHHHhhhhhhccCCeEEEEecCeEEeCCchHHHcc--cCCCC-eee
Q 010099 295 ILIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDI--NMGGK-VNG 371 (518)
Q Consensus 295 ~L~ql~~~~~~~~~f~~~~~p~~~~r~~ylS~~ty~Rl~iPellP~ldKVLYLD~DvVV~~DLseLw~i--DL~g~-~ig 371 (518)
|. .+. ... +..++..+|+||++|++||+++||||||+|+||.+||++||++ |++|+ ++|
T Consensus 69 -------P~--------~~~--~~w-s~l~~~~~y~RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~~~~df~~~~~aA 130 (304)
T cd06430 69 -------PS--------GNA--AEW-KKLFKPCAAQRLFLPSLLPDVDSLLYVDTDILFLRPVEEIWSFLKKFNSTQLAA 130 (304)
T ss_pred -------Cc--------cch--hhh-hhcccHHHHHHHHHHHHhhhhceEEEeccceeecCCHHHHHHHHhhcCCCeEEE
Confidence 10 000 000 1345678999999999999999999999999999999999999 99886 555
Q ss_pred eecccccc-hhhhhhhhccCCCCCCCCccccceEEEechHHHH-----------hhHHHHHHHHHHHHccCCcchhhhhc
Q 010099 372 AVQSCSVS-LGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRE-----------LDLTKTYQRLVREVSMGEESKEAVAL 439 (518)
Q Consensus 372 AV~d~~~~-~~~~~~yl~~~~~~~~~~yfNsGVlLiNL~~WR~-----------~nit~~~~~~l~~~~~~~~~~dQd~L 439 (518)
++++.... .+.+.++.. .++ ....|||||||+|||++||+ .++++++++++++......++|||+|
T Consensus 131 ~v~e~~~~~~~~~~~~~~-~~~-~~~~gFNSGVmLmNL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~DQDiL 208 (304)
T cd06430 131 MAPEHEEPNIGWYNRFAR-HPY-YGKTGVNSGVMLMNLTRMRRKYFKNDMTPVGLRWEEILMPLYKKYKLKITWGDQDLI 208 (304)
T ss_pred EEecccccchhhhhhhcc-cCc-ccccccccceeeeeHHHHHhhhcccccchhhhhHHHHHHHHHHhcccCCCCCCHHHH
Confidence 66654321 111222111 122 12347999999999999999 78899999999887777889999999
Q ss_pred hhhhhhccCc---EEEcCCcccccCC--CCCCCCCHhhhcCCEEEEecCCCCCcccCCccchHHHHHHHHhhC-hhhh
Q 010099 440 RGSLLTFQDL---VYALDGVWALSGL--GHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQE-DQLL 511 (518)
Q Consensus 440 n~~li~f~~~---i~~Lp~~WN~~~l--g~~~~~~~~~~~~~~IIHY~G~~KPW~~~~~~~y~~~W~~Y~~~s-~~fl 511 (518)
| ++|.++ ++.||.+||++.. .|.........+.++|||++++.| +....+.|+.++....+++ ..-|
T Consensus 209 N---~v~~~~p~~~~~Lp~~wN~~~d~~~y~~~~~~~~~~~~~~~H~n~~~~--~~~~~~~f~~~~~~~~~~~~g~~~ 281 (304)
T cd06430 209 N---IIFHHNPEMLYVFPCHWNYRPDHCMYGSNCKAAEEEGVFILHGNRGVY--HSDKQPAFRAVYEAIREYTFGDDL 281 (304)
T ss_pred H---HHHcCCCCeEEEcCccccCCccceeecccccccccccceEEEcCCCCC--CCccchHHHHHHHHHHhcccccch
Confidence 9 578887 9999999998742 111111223456899999998766 4455567999998888887 4443
No 18
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=100.00 E-value=1e-33 Score=282.54 Aligned_cols=225 Identities=16% Similarity=0.195 Sum_probs=163.6
Q ss_pred eEEEE-EeCC-c-hhhHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHH-HHHHhccCCCceEEEEEeccccccchhhHHH
Q 010099 221 HHYVI-FSTN-V-LASSVVINSTVLCARESKNQVFHVLTDGQNYFAMK-LWFFRNTFKEATVQVLNIEQLNLESHDKAIL 296 (518)
Q Consensus 221 ihIv~-~sDN-v-LaasVvI~Sil~n~~~p~~i~FHIltd~is~~~~~-~wf~~~~~~~a~i~v~~i~~f~~~~~~~~~L 296 (518)
+||+. .+++ | ..++|+|.|+++|+. ..++|||++++++.+..+ +-.....+ ++.++++.++.-.| +
T Consensus 1 ini~~~~~~~~y~~~~~v~l~Sll~nn~--~~~~fyil~~~is~e~~~~l~~~~~~~-~~~i~~i~i~~~~~-------~ 70 (248)
T cd06432 1 INIFSVASGHLYERFLRIMMLSVMKNTK--SPVKFWFIKNFLSPQFKEFLPEMAKEY-GFEYELVTYKWPRW-------L 70 (248)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHHHcCC--CCEEEEEEeCCCCHHHHHHHHHHHHHh-CCceEEEEecChhh-------h
Confidence 57777 5544 5 457899999999985 579999999999987755 22233344 56778877642111 0
Q ss_pred hhhccccceecccccCCCCCCcCccccccHHHHHHHhhhhhhc-cCCeEEEEecCeEEeCCchHHHcccCCCCeeeeecc
Q 010099 297 IHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQ-SLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQS 375 (518)
Q Consensus 297 ~ql~~~~~~~~~f~~~~~p~~~~r~~ylS~~ty~Rl~iPellP-~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d 375 (518)
. ..+ . ..+ ...+|.|++++++|| +++||||||+|+||.+||++||++||+|+++|||+|
T Consensus 71 ~---------------~~~-~---~~~-~~~~y~rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl~~~~~Aav~d 130 (248)
T cd06432 71 H---------------KQT-E---KQR-IIWGYKILFLDVLFPLNVDKVIFVDADQIVRTDLKELMDMDLKGAPYGYTPF 130 (248)
T ss_pred h---------------ccc-c---cch-hHHHHHHHHHHHhhhhccCEEEEEcCCceecccHHHHHhcCcCCCeEEEeec
Confidence 0 000 0 011 356788999999999 799999999999999999999999999999999999
Q ss_pred cccchh----hh--hhhhccCCCCCCCCccccceEEEechHHHHhhHHHHHHHHHHHH---ccCCcchhhhhchhhhhhc
Q 010099 376 CSVSLG----QL--KSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREV---SMGEESKEAVALRGSLLTF 446 (518)
Q Consensus 376 ~~~~~~----~~--~~yl~~~~~~~~~~yfNsGVlLiNL~~WR~~nit~~~~~~l~~~---~~~~~~~dQd~Ln~~li~f 446 (518)
|..... ++ ..|. ..++ .+..|||||||||||++||++++++++.++++.. ...+.++|||+|| .++
T Consensus 131 ~~~~~~~~~~~~~~~~~~-~~~l-~~~~YfNSGVmliNL~~wR~~~i~~~~~~~~~~l~~~~~~l~~~DQDiLN---~v~ 205 (248)
T cd06432 131 CDSRKEMDGFRFWKQGYW-KSHL-RGRPYHISALYVVDLKRFRRIAAGDRLRGQYQQLSQDPNSLANLDQDLPN---NMQ 205 (248)
T ss_pred cccchhcccchhhhhhhh-hhhc-CCCCccceeeEEEeHHHHHHHhHHHHHHHHHHHHhcCCCccccCCchhhH---HHh
Confidence 865210 01 1111 1122 2346999999999999999999999777766543 3347789999999 477
Q ss_pred cCc-EEEcCCcccccCCCCCCCCCHhhhcCCEEEEecCC
Q 010099 447 QDL-VYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGN 484 (518)
Q Consensus 447 ~~~-i~~Lp~~WN~~~lg~~~~~~~~~~~~~~IIHY~G~ 484 (518)
.+. ++.||.+||++ .++. ..+..+.|.+|||..+
T Consensus 206 ~~~~i~~Lp~~w~~~-~~~~---~~~~~~~~~~~~~~~~ 240 (248)
T cd06432 206 HQVPIFSLPQEWLWC-ETWC---SDESKKKAKTIDLCNN 240 (248)
T ss_pred ccCCeEECChHHHHH-HHHh---cccccCccceeecccC
Confidence 775 99999999998 2221 1334678999999874
No 19
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=99.94 E-value=5.2e-26 Score=225.61 Aligned_cols=221 Identities=16% Similarity=0.148 Sum_probs=151.7
Q ss_pred EEEE-Ee-CCchh-hHHHHHHHHHhcCCCCceEEEEEe-CCCCHHHHHHHHHhccCCCceEEEEEeccccccchhhHHHh
Q 010099 222 HYVI-FS-TNVLA-SSVVINSTVLCARESKNQVFHVLT-DGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILI 297 (518)
Q Consensus 222 hIv~-~s-DNvLa-asVvI~Sil~n~~~p~~i~FHIlt-d~is~~~~~~wf~~~~~~~a~i~v~~i~~f~~~~~~~~~L~ 297 (518)
++|. ++ |||+. ++|++.|+++|+++ +.+||+. ++++.+..+... .. ..+++.++..+.... .
T Consensus 2 ay~t~~~~~~Y~~~a~vl~~SL~~~~~~---~~~~vl~~~~is~~~~~~L~---~~---~~~~~~v~~i~~~~~----~- 67 (240)
T cd02537 2 AYVTLLTNDDYLPGALVLGYSLRKVGSS---YDLVVLVTPGVSEESREALE---EV---GWIVREVEPIDPPDS----A- 67 (240)
T ss_pred EEEEEecChhHHHHHHHHHHHHHhcCCC---CCEEEEECCCCCHHHHHHHH---Hc---CCEEEecCccCCcch----h-
Confidence 4555 44 46665 57999999999773 4555554 568876654211 11 134444433221000 0
Q ss_pred hhccccceecccccCCCCCCcCccccccHHHHHHHhhhhhhccCCeEEEEecCeEEeCCchHHHcccCCCCeeeeecccc
Q 010099 298 HMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCS 377 (518)
Q Consensus 298 ql~~~~~~~~~f~~~~~p~~~~r~~ylS~~ty~Rl~iPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~ 377 (518)
..+ ....+..+|.||+++++. +++||||||+|+||.+||++||++ +..+||+.|+.
T Consensus 68 ---------------~~~-----~~~~~~~~~~kl~~~~l~-~~drvlylD~D~~v~~~i~~Lf~~---~~~~~a~~d~~ 123 (240)
T cd02537 68 ---------------NLL-----KRPRFKDTYTKLRLWNLT-EYDKVVFLDADTLVLRNIDELFDL---PGEFAAAPDCG 123 (240)
T ss_pred ---------------hhc-----cchHHHHHhHHHHhcccc-ccceEEEEeCCeeEccCHHHHhCC---CCceeeecccC
Confidence 000 123567789999999975 699999999999999999999987 66788887753
Q ss_pred cchhhhhhhhccCCCCCCCCccccceEEEechHHHHhhHHHHHHHHHHHHccCCcchhhhhchhhhhhccCc--EEEcCC
Q 010099 378 VSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDL--VYALDG 455 (518)
Q Consensus 378 ~~~~~~~~yl~~~~~~~~~~yfNsGVlLiNL~~WR~~nit~~~~~~l~~~~~~~~~~dQd~Ln~~li~f~~~--i~~Lp~ 455 (518)
. ..|||||||++|++. ++.+++++++.+... ....|||+|| .+|.++ +..||.
T Consensus 124 ~-----------------~~~fNsGv~l~~~~~----~~~~~~~~~~~~~~~-~~~~DQdiLN---~~~~~~~~~~~l~~ 178 (240)
T cd02537 124 W-----------------PDLFNSGVFVLKPSE----ETFNDLLDALQDTPS-FDGGDQGLLN---SYFSDRGIWKRLPF 178 (240)
T ss_pred c-----------------cccccceEEEEcCCH----HHHHHHHHHHhccCC-CCCCCHHHHH---HHHcCCCCEeECCc
Confidence 1 259999999999964 455666777666433 5678999999 588999 999999
Q ss_pred cccccCCCCCCCCC-HhhhcCCEEEEecCCCCCcccCCcc---------chHHHHHHHHh
Q 010099 456 VWALSGLGHDYGLN-IEAIKKAAVLHYNGNMKPWLELGIP---------RYKKFWKKFLN 505 (518)
Q Consensus 456 ~WN~~~lg~~~~~~-~~~~~~~~IIHY~G~~KPW~~~~~~---------~y~~~W~~Y~~ 505 (518)
+||++...+..... ....++|+||||+|+.|||...+.. .....||+.+.
T Consensus 179 ~yN~~~~~~~~~~~~~~~~~~~~iiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~w~~~~~ 238 (240)
T cd02537 179 TYNALKPLRYLHPEALWFGDEIKVVHFIGGDKPWSWWRDPETKEKDDYNELHQWWWDIYD 238 (240)
T ss_pred ceeeehhhhccCchhhcccCCcEEEEEeCCCCCCCCCcCCCcccccchHHHHHHHHHHHh
Confidence 99998322211111 1345789999999999999876443 45677887764
No 20
>PLN00176 galactinol synthase
Probab=99.93 E-value=6.2e-25 Score=226.87 Aligned_cols=169 Identities=20% Similarity=0.283 Sum_probs=119.9
Q ss_pred HHHHHHhhhhhhccCCeEEEEecCeEEeCCchHHHcccCCCCeeeeecccccchh--hhhhh-hc-------cCCC----
Q 010099 327 FSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLG--QLKSY-LG-------ENSY---- 392 (518)
Q Consensus 327 ~ty~Rl~iPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~~~~~--~~~~y-l~-------~~~~---- 392 (518)
.+|.||.++++. +++||||||+|+||.++|++||+++ +..+|||.||..... ...+| ++ ..++
T Consensus 100 i~~tKl~iw~l~-~ydkvlyLDaD~lv~~nid~Lf~~~--~~~~aAV~dc~~~~~~~~~p~~~~~~c~~~~~~~~wp~~~ 176 (333)
T PLN00176 100 INYSKLRIWEFV-EYSKMIYLDGDIQVFENIDHLFDLP--DGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTWPAEL 176 (333)
T ss_pred hhhhhhhhcccc-ccceEEEecCCEEeecChHHHhcCC--CcceEEEecccccccccccccccccccccchhhccchhhc
Confidence 467799999876 6999999999999999999999884 335899999875311 00000 00 0111
Q ss_pred C-CCCCccccceEEEechHHHHhhHHHHHHHHHHHHccCCcchhhhhchhhhhhccCcEEEcCCcccccC-CCCCCCCCH
Q 010099 393 D-KNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDGVWALSG-LGHDYGLNI 470 (518)
Q Consensus 393 ~-~~~~yfNsGVlLiNL~~WR~~nit~~~~~~l~~~~~~~~~~dQd~Ln~~li~f~~~i~~Lp~~WN~~~-lg~~~~~~~ 470 (518)
. +...||||||||||++.|+.+++.+ +++... ...+.|||+|| ..|.+++.+||.+||++. ..+... ..
T Consensus 177 g~~~~~yFNSGVlvinps~~~~~~ll~----~l~~~~-~~~f~DQD~LN---~~F~~~~~~Lp~~YN~~~~~~~~~~-~~ 247 (333)
T PLN00176 177 GPPPPLYFNAGMFVFEPSLSTYEDLLE----TLKITP-PTPFAEQDFLN---MFFRDIYKPIPPVYNLVLAMLWRHP-EN 247 (333)
T ss_pred cCCCCCeEEeEEEEEEcCHHHHHHHHH----HHHhcC-CCCCCCHHHHH---HHHcCcEEECCchhcCchhhhhhCh-hh
Confidence 1 1357999999999999999877654 444432 45789999999 699999999999999982 222111 01
Q ss_pred hhhcCCEEEEecC-CCCCcccCCcc---------chHHHHHHHHhhC
Q 010099 471 EAIKKAAVLHYNG-NMKPWLELGIP---------RYKKFWKKFLNQE 507 (518)
Q Consensus 471 ~~~~~~~IIHY~G-~~KPW~~~~~~---------~y~~~W~~Y~~~s 507 (518)
...++++||||+| ..|||+..+.+ .+-..||..++.+
T Consensus 248 ~~~~~vkIIHY~~~~~KPW~~~~~~~~~~~~~~~~~~~~Ww~~~~~~ 294 (333)
T PLN00176 248 VELDKVKVVHYCAAGSKPWRYTGKEENMDREDIKMLVKKWWDIYNDE 294 (333)
T ss_pred cccCCcEEEEeeCCCCCCCCCCCcccCCChHHHHHHHHHHHHHhccc
Confidence 1246899999997 57999865421 2456788887654
No 21
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=99.80 E-value=8.1e-19 Score=177.71 Aligned_cols=141 Identities=13% Similarity=0.146 Sum_probs=108.6
Q ss_pred cccHHHHHHHhhhhhhccCCeEEEEecCeEEeCCchHHHcccCCCCeeeeecccccchhhhhhhhccCCCCCCCCccccc
Q 010099 323 YISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSG 402 (518)
Q Consensus 323 ylS~~ty~Rl~iPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~~~~~~~~~yl~~~~~~~~~~yfNsG 402 (518)
.++. +|.||.++++ ++++||||||+|+||.++|++||+++... .+||+.. + .|||||
T Consensus 76 ~~~~-~~tKl~~~~l-~~y~kvlyLDaD~l~~~~ideLf~~~~~~-~~Aap~~---------------~-----~~FNSG 132 (278)
T cd06914 76 YWAK-SLTKLRAFNQ-TEYDRIIYFDSDSIIRHPMDELFFLPNYI-KFAAPRA---------------Y-----WKFASH 132 (278)
T ss_pred cHHH-HHHHHHhccc-cceeeEEEecCChhhhcChHHHhcCCccc-ceeeecC---------------c-----ceecce
Confidence 3443 5999999998 68999999999999999999999987333 3455431 0 189999
Q ss_pred eEEEechHHHHhhHHHHHHHHHHHHccCCcchhhhhchhhhhhccCc-------EEEcCCc-ccccCCCCCC--------
Q 010099 403 LNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDL-------VYALDGV-WALSGLGHDY-------- 466 (518)
Q Consensus 403 VlLiNL~~WR~~nit~~~~~~l~~~~~~~~~~dQd~Ln~~li~f~~~-------i~~Lp~~-WN~~~lg~~~-------- 466 (518)
|||||+++|+.+++++++.++... +...+|||+|| .+|.+. +..||.+ ||++.--+..
T Consensus 133 vmvi~ps~~~~~~l~~~~~~~~~~---~~~~~DQdiLN---~~~~~~~~~~~~~~~~Lp~~~y~llt~~~r~~~~~~~l~ 206 (278)
T cd06914 133 LMVIKPSKEAFKELMTEILPAYLN---KKNEYDMDLIN---EEFYNSKQLFKPSVLVLPHRQYGLLTGEFREKLHKSFLS 206 (278)
T ss_pred eEEEeCCHHHHHHHHHHHHHhccc---CCCCCChHHHH---HHHhCCccccCcceEEcCccccccCChhhcccCHHHhhc
Confidence 999999999999999988776433 23578999999 688999 9999997 9988321110
Q ss_pred -------CCC-HhhhcCCEEEEecCC--CCCcccCC
Q 010099 467 -------GLN-IEAIKKAAVLHYNGN--MKPWLELG 492 (518)
Q Consensus 467 -------~~~-~~~~~~~~IIHY~G~--~KPW~~~~ 492 (518)
..+ .+..+++++|||++. .|||....
T Consensus 207 ~~~~~~~~w~~~~~~~~~k~vHFSd~Pl~KPW~~~~ 242 (278)
T cd06914 207 NAQHLYEKWDPDDVFKESKVIHFSDSPLPKPWNYNN 242 (278)
T ss_pred cccccccccCHHHHHhhCeEEEecCCCCCCCcCCcC
Confidence 011 234578999999986 69998763
No 22
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=6.7e-11 Score=135.77 Aligned_cols=245 Identities=18% Similarity=0.229 Sum_probs=164.4
Q ss_pred CCCceEEEE-EeCC-chhh-HHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHH-HHHhccCCCceEEEEEeccccccchh
Q 010099 217 DPSLHHYVI-FSTN-VLAS-SVVINSTVLCARESKNQVFHVLTDGQNYFAMKL-WFFRNTFKEATVQVLNIEQLNLESHD 292 (518)
Q Consensus 217 d~~~ihIv~-~sDN-vLaa-sVvI~Sil~n~~~p~~i~FHIltd~is~~~~~~-wf~~~~~~~a~i~v~~i~~f~~~~~~ 292 (518)
|.+.|||+- +|-. |=.- -++|.|+++|++.| +.|.++-+-++..-... =-..+.| +...+++. |+|-.
T Consensus 1178 ~~~vINIFSvASGHLYERflrIMm~SvlknTktp--VKFWfLkNyLSPtFKe~iP~mA~eY-nFeyElv~---YkWPr-- 1249 (1470)
T KOG1879|consen 1178 DKEVINIFSVASGHLYERFLRIMMLSVLKNTKTP--VKFWFLKNYLSPTFKESIPHMAKEY-NFEYELVQ---YKWPR-- 1249 (1470)
T ss_pred ccceEEEEeeccccHHHHHHHHHHHHHHhCCCCc--eeEEeehhhcChHHHHHHHHHHHHh-CceEEEEE---ecCch--
Confidence 455899987 5555 3333 37888999999976 99999999887543221 1112233 33445443 44410
Q ss_pred hHHHhhhccccceecccccCCCCCCcCccccccHHHHHHHhhhhhhc-cCCeEEEEecCeEEeCCchHHHcccCCCCeee
Q 010099 293 KAILIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQ-SLTKVVVLDDDVVVQKDLSALWDINMGGKVNG 371 (518)
Q Consensus 293 ~~~L~ql~~~~~~~~~f~~~~~p~~~~r~~ylS~~ty~Rl~iPellP-~ldKVLYLD~DvVV~~DLseLw~iDL~g~~ig 371 (518)
=|.|- . .+-| -+..|--|||.=||| +++||||.|+|.||+.||.||.++|++|.+.|
T Consensus 1250 --WLhqQ----~------------EKQR----iiWgyKILFLDVLFPL~v~KvIfVDADQIVR~DL~EL~dfdl~GaPyg 1307 (1470)
T KOG1879|consen 1250 --WLHQQ----T------------EKQR----IIWGYKILFLDVLFPLNVDKVIFVDADQIVRADLKELMDFDLGGAPYG 1307 (1470)
T ss_pred --hhhhh----h------------hhhh----hhhhhhhhhhhhccccccceEEEEcchHhhhhhhHHHHhcccCCCccc
Confidence 11110 0 0111 134554578888889 99999999999999999999999999999999
Q ss_pred eecccccch----------hhhhhhhccCCCCCCCCccccceEEEechHHHHhhHHHHHHHHHHHHccC---Ccchhhhh
Q 010099 372 AVQSCSVSL----------GQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMG---EESKEAVA 438 (518)
Q Consensus 372 AV~d~~~~~----------~~~~~yl~~~~~~~~~~yfNsGVlLiNL~~WR~~nit~~~~~~l~~~~~~---~~~~dQd~ 438 (518)
-++-|..+. |++++.| .+..|--|...|+||++.|+..-..++.-..+....+ +.=.|||.
T Consensus 1308 YtPfCdsR~EMDGyRFWK~GYW~~hL------~grkYHISALYVVDLkrFReiaAGDrLR~qYQ~LS~DPNSLsNLDQDL 1381 (1470)
T KOG1879|consen 1308 YTPFCDSRREMDGYRFWKQGYWKKHL------RGRKYHISALYVVDLKRFREIAAGDRLRGQYQALSQDPNSLSNLDQDL 1381 (1470)
T ss_pred cCccccccccccchhHHhhhHHHHHh------ccCccccceeeeeeHHHHHhcccchHHHHHHHhhcCCcchhhhccccc
Confidence 999997641 1222222 2357889999999999999988888877555654332 33468997
Q ss_pred chhhhhhccCcEEEcCCcccccCCCCCCCCCHhhhcCCEEEEecCCCCCcccC----CccchHHHHHHHHh
Q 010099 439 LRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLEL----GIPRYKKFWKKFLN 505 (518)
Q Consensus 439 Ln~~li~f~~~i~~Lp~~WN~~~lg~~~~~~~~~~~~~~IIHY~G~~KPW~~~----~~~~y~~~W~~Y~~ 505 (518)
-|. +...-.|+.||..|-++. ...+.+..+++++|--+.+ ||... +..+....|..|-.
T Consensus 1382 PNn--m~hqVpIkSLPqeWLWCE----TWC~d~skkkAktIDLCnN--P~TKEpKL~~A~Riv~EW~dyD~ 1444 (1470)
T KOG1879|consen 1382 PNN--MQHQVPIKSLPQEWLWCE----TWCDDESKKKAKTIDLCNN--PLTKEPKLDAARRIVSEWTDYDA 1444 (1470)
T ss_pred ccc--ceeecccccCCcchhhhh----hhcCchhhhhchhhhhhcC--ccccchhhHHHhhhcCCCcccch
Confidence 663 455667899999998762 1223456778999999876 88765 12334455665543
No 23
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.83 E-value=1.3e-05 Score=81.71 Aligned_cols=154 Identities=18% Similarity=0.172 Sum_probs=82.5
Q ss_pred HHHHhhhhhhccCCeEEEEecCeEEeCCchHHHcccCCCCeeeeecccccc---hhh------------hh---------
Q 010099 329 HLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVS---LGQ------------LK--------- 384 (518)
Q Consensus 329 y~Rl~iPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~~~---~~~------------~~--------- 384 (518)
+.++.+-+.- ++|||+|||+|.||.+++++||+.. -+-.+|.+|.... +++ +.
T Consensus 157 ftKLrVfeqt-EyDRvifLDsDaivlknmDklFd~P--vyef~a~pD~~~sp~~fhrp~~~i~~~ft~~faayg~~r~~l 233 (368)
T COG5597 157 FTKLRVFEQT-EYDRVIFLDSDAIVLKNMDKLFDYP--VYEFAAAPDVYESPADFHRPNSGIFVSFTPAFAAYGKMRAAL 233 (368)
T ss_pred hHHHHhhhhh-hhceEEEeccchHHhhhhHHHhcch--hhhhccCCchhhCHHHhcCCCCccceeecHHHHhhcccHhhh
Confidence 3344443433 6999999999999999999999865 3445555553221 110 11
Q ss_pred --hhhcc---------CCCCCCCCccccceEEEechHHHHhhHHHHHHHHHHHHccCCcchhhhhchhhhhhccC----c
Q 010099 385 --SYLGE---------NSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQD----L 449 (518)
Q Consensus 385 --~yl~~---------~~~~~~~~yfNsGVlLiNL~~WR~~nit~~~~~~l~~~~~~~~~~dQd~Ln~~li~f~~----~ 449 (518)
-|+.. ...++-..+||||.||++..+..-..+-.-. +-+.-.+.....|..+| ++++. -
T Consensus 234 y~Pylf~a~~dq~~~hstpP~fk~~FnagLmv~~Psk~hm~riv~~a---lPklydda~mmeqslln---laYn~~g~FP 307 (368)
T COG5597 234 YAPYLFWARTDQTFLHSTPPDFKLKFNAGLMVGLPSKMHMLRIVWFA---LPKLYDDADMMEQSLLN---LAYNYEGFFP 307 (368)
T ss_pred ccccccccccCCcccccCCCcHhhhhccCceeecchHHHHHHHHHHh---hHHhhhhhhHHHHHHHH---HHHhhhccCc
Confidence 12210 1112235789999999998765543332211 11222234455677776 34322 3
Q ss_pred EEEcCCcccccCCCCCCCCCHhhhcCCEEEEecCCCCCcccCCcc---chHHHHH
Q 010099 450 VYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIP---RYKKFWK 501 (518)
Q Consensus 450 i~~Lp~~WN~~~lg~~~~~~~~~~~~~~IIHY~G~~KPW~~~~~~---~y~~~W~ 501 (518)
|..++.+|| |+-. ....+.-.+-+|+ |||...+.. -....|+
T Consensus 308 werld~~yN----G~wa--~~ndlPylka~Hg----K~W~y~g~~fp~i~~~ew~ 352 (368)
T COG5597 308 WERLDPRYN----GYWA--DANDLPYLKAWHG----KPWFYTGEQFPDIAGLEWP 352 (368)
T ss_pred hhhcCcccc----cccc--cccccchHHHhhc----CcCCCCcccChhhhcCcCh
Confidence 456666666 2210 1111222234554 999987653 1344566
No 24
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=96.87 E-value=0.0071 Score=58.54 Aligned_cols=144 Identities=15% Similarity=0.029 Sum_probs=81.4
Q ss_pred ccHHHHHHH-hhhhhhccCCeEEEEecCeEEeCCchHHHcccCCCCeeeeecccccchhhhhhhhccCCCCCCCCccccc
Q 010099 324 ISVFSHLHY-LLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSG 402 (518)
Q Consensus 324 lS~~ty~Rl-~iPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~~~~~~~~~yl~~~~~~~~~~yfNsG 402 (518)
+..++..|. ++-+++..---|+|+|+|+|..+|..++++ -.+.-+.+..|+.... ........+|+|
T Consensus 48 ~~~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~~~dp~~~~~--~~~~Di~~~~d~~~~~----------~~~~~~~~~n~G 115 (212)
T PF03407_consen 48 FQKLTWLKPKVLLDLLELGYDVLFSDADVVWLRDPLPYFE--NPDADILFSSDGWDGT----------NSDRNGNLVNTG 115 (212)
T ss_pred HHHHHHHHHHHHHHHHHcCCceEEecCCEEEecCcHHhhc--cCCCceEEecCCCccc----------chhhcCCccccc
Confidence 345556665 455666644469999999999999999992 1333344444654310 011123356999
Q ss_pred eEEEechHHHHhhHHHHHH-HHHHHHccCCcchhhhhchhhhhhc-----cCcEEEcCCcccccCCCCCCC-CCH-hh--
Q 010099 403 LNIVDLARWRELDLTKTYQ-RLVREVSMGEESKEAVALRGSLLTF-----QDLVYALDGVWALSGLGHDYG-LNI-EA-- 472 (518)
Q Consensus 403 VlLiNL~~WR~~nit~~~~-~~l~~~~~~~~~~dQd~Ln~~li~f-----~~~i~~Lp~~WN~~~lg~~~~-~~~-~~-- 472 (518)
++.+--.. -+.+++ +|..........+||.++|..+..- .-++..||...-..|.++-.. ... ..
T Consensus 116 ~~~~r~t~-----~~~~~~~~w~~~~~~~~~~~DQ~~~n~~l~~~~~~~~~~~~~~L~~~~f~~g~~~f~~~~~~~~~~~ 190 (212)
T PF03407_consen 116 FYYFRPTP-----RTIAFLEDWLERMAESPGCWDQQAFNELLREQAARYGGLRVRFLPPSLFPNGHGYFCQSRDWAWVPT 190 (212)
T ss_pred eEEEecCH-----HHHHHHHHHHHHHHhCCCcchHHHHHHHHHhcccCCcCcEEEEeCHHHeeccccceeecchhhhhcc
Confidence 99985432 333333 3433333333457999999755332 223677776544333322111 111 11
Q ss_pred hcCCEEEEecCC
Q 010099 473 IKKAAVLHYNGN 484 (518)
Q Consensus 473 ~~~~~IIHY~G~ 484 (518)
...|.+||.++.
T Consensus 191 ~~~p~~vH~n~~ 202 (212)
T PF03407_consen 191 KNKPYIVHANCC 202 (212)
T ss_pred ccccceEEEcCC
Confidence 357999999863
No 25
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=93.13 E-value=0.69 Score=49.77 Aligned_cols=166 Identities=16% Similarity=0.157 Sum_probs=86.2
Q ss_pred cccccHHHHHHHhhhhhhccCCeEEEEecCeEEeCCchHHHcccCCCC--eeeeecccccchhhhhhhhccCCCCCCCCc
Q 010099 321 MQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGK--VNGAVQSCSVSLGQLKSYLGENSYDKNSCA 398 (518)
Q Consensus 321 ~~ylS~~ty~Rl~iPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~--~igAV~d~~~~~~~~~~yl~~~~~~~~~~y 398 (518)
+.+++..-++|=.+-. +|+.+.|.|||+|.||..-- +++.++.+ .+-.+. .+..-+ -..++-.+
T Consensus 179 p~~WaKlpaLR~aM~~-~PeaEWiWWLDsDALImNms---felPlery~~~NlVih-------g~~~~l---~~~kdW~G 244 (429)
T PLN03182 179 AGFWAKLPLLRKLMLA-HPEVEWIWWMDSDALFTDMT---FEIPLEKYEGYNLVIH-------GWDELV---YDQKSWIG 244 (429)
T ss_pred CcchhHHHHHHHHHHH-CCCceEEEEecCCceeecCC---CCCCHhHcCCcCeeec-------cchhhh---eeccccCc
Confidence 4567676666644432 58999999999999998632 22333211 111111 011100 01223468
Q ss_pred cccceEEEechHHHHhhHHH------------HHHHHHHH-Hc--cCCcchhhhhchhhhhhccC---cEEEcCCccccc
Q 010099 399 WMSGLNIVDLARWRELDLTK------------TYQRLVRE-VS--MGEESKEAVALRGSLLTFQD---LVYALDGVWALS 460 (518)
Q Consensus 399 fNsGVlLiNL~~WR~~nit~------------~~~~~l~~-~~--~~~~~~dQd~Ln~~li~f~~---~i~~Lp~~WN~~ 460 (518)
.|+|+++|-..+|--.=+.. +.-+.+.. +. ..+..-||.+|-..|+.-.. .-.+|...|-+.
T Consensus 245 LNtGsFLIRNcqWSldlLDaWa~mgp~~~~~~~~g~~l~~~l~~rp~~eaDDQSAlvyLl~~~~~~w~~kv~le~~y~l~ 324 (429)
T PLN03182 245 LNTGSFLIRNCQWSLDLLDAWAPMGPKGPIRDEAGKILTAELKGRPAFEADDQSALVYLLLTQRERWGDKVYLENSYYLH 324 (429)
T ss_pred cceeeEEEEcCHHHHHHHHHHHhcCCCCchhhhHHHHHHHhhcCCCCCCcccHHHHHHHHHhcchhhccceEEeecceec
Confidence 99999999888776432111 11111111 11 13456688888654433322 224556666555
Q ss_pred CC------CCCC---CC--CHhhhcCCEEEEecCCCCCcccCCccchHHHHH
Q 010099 461 GL------GHDY---GL--NIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWK 501 (518)
Q Consensus 461 ~l------g~~~---~~--~~~~~~~~~IIHY~G~~KPW~~~~~~~y~~~W~ 501 (518)
|. .|+. .+ .....+-|-|.||+| .||....+.-.-..-|.
T Consensus 325 Gyw~~iv~~yee~~~~~~~g~gd~rwPfvtHF~G-ckpC~~~~~y~~~~C~~ 375 (429)
T PLN03182 325 GYWVGLVDRYEEMMEKYHPGLGDDRWPFVTHFVG-CKPCGGYGDYPVERCLK 375 (429)
T ss_pred cccHHHHHHHHHHHHhcCCCCCCcccceeEeecc-ceecCCCCCcCHHHHHH
Confidence 42 0110 00 112345689999999 89996654323344444
No 26
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=90.94 E-value=1.1 Score=45.59 Aligned_cols=31 Identities=32% Similarity=0.480 Sum_probs=26.5
Q ss_pred hhhhhccCCeEEEEecCeEEeCCchHHHccc
Q 010099 334 LPEIFQSLTKVVVLDDDVVVQKDLSALWDIN 364 (518)
Q Consensus 334 iPellP~ldKVLYLD~DvVV~~DLseLw~iD 364 (518)
+.-++...+.||+||+|.|...|++.||+.+
T Consensus 84 lA~l~ssFeevllLDaD~vpl~~p~~lF~~~ 114 (271)
T PF11051_consen 84 LALLFSSFEEVLLLDADNVPLVDPEKLFESE 114 (271)
T ss_pred hhhhhCCcceEEEEcCCcccccCHHHHhcCc
Confidence 3446668999999999999999999999754
No 27
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=90.86 E-value=0.16 Score=50.86 Aligned_cols=140 Identities=14% Similarity=0.137 Sum_probs=12.5
Q ss_pred ccCCeEEEEecCeEEeCCchHHHcccCCCCeee--eeccccc-chhhhhh-h--hc--c--CCCCCCCCccccceEEEec
Q 010099 339 QSLTKVVVLDDDVVVQKDLSALWDINMGGKVNG--AVQSCSV-SLGQLKS-Y--LG--E--NSYDKNSCAWMSGLNIVDL 408 (518)
Q Consensus 339 P~ldKVLYLD~DvVV~~DLseLw~iDL~g~~ig--AV~d~~~-~~~~~~~-y--l~--~--~~~~~~~~yfNsGVlLiNL 408 (518)
|+.+-|+|||+|.+|..-=-+|-+.=|+...+- ..++... ......+ + .. . .-...+..++|+|++++-.
T Consensus 75 P~~~wv~~lD~Dali~n~~~~L~~~il~p~~L~~~~~r~~~~~p~~~~~~~~~~~~~~~~~li~t~d~~gLNtGsFliRn 154 (239)
T PF05637_consen 75 PEAEWVWWLDSDALIMNPDFSLEEHILSPSRLDSLLLRDVPIVPPDSIIKTYSVIDGNDIHLIITQDWNGLNTGSFLIRN 154 (239)
T ss_dssp TT-SEEEEE-TTEEE-----------------------------------------------------------------
T ss_pred CCCCEEEEEcCCeEEEeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 889999999999999875555433212111100 0011000 0000000 0 00 0 0123456789999999977
Q ss_pred hHHHHhhHHHHHHHHHHHHccC---Ccchhhhhchhhhh---hccCcEEEcCCcccccCCCCCCC-CCHhhhcCCEEEEe
Q 010099 409 ARWRELDLTKTYQRLVREVSMG---EESKEAVALRGSLL---TFQDLVYALDGVWALSGLGHDYG-LNIEAIKKAAVLHY 481 (518)
Q Consensus 409 ~~WR~~nit~~~~~~l~~~~~~---~~~~dQd~Ln~~li---~f~~~i~~Lp~~WN~~~lg~~~~-~~~~~~~~~~IIHY 481 (518)
..|-+. +.+.+.+.... ..+ ....+|.+|-..+. .+.+++..+|.+|=-. |... ......+..-|+||
T Consensus 155 s~ws~~-fLd~w~~~~~~-~~~~~~~~~~EQsAl~~ll~~~~~~~~~~~~vpq~~~ns---y~~~~~~~~~~~GDfvvhf 229 (239)
T PF05637_consen 155 SPWSRD-FLDAWADPLYR-NYDWDQLEFDEQSALEHLLQWHPEILSKVALVPQRWFNS---YPEDECNYQYKEGDFVVHF 229 (239)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc-ccccccccccc-ccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccc
Confidence 776653 22222221111 112 23568888853221 2335555666554111 1100 00123455689999
Q ss_pred cC
Q 010099 482 NG 483 (518)
Q Consensus 482 ~G 483 (518)
.|
T Consensus 230 aG 231 (239)
T PF05637_consen 230 AG 231 (239)
T ss_dssp --
T ss_pred cc
Confidence 99
No 28
>PLN03181 glycosyltransferase; Provisional
Probab=82.47 E-value=2 Score=46.40 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=24.1
Q ss_pred ccccHHHHHHHhhhhhhccCCeEEEEecCeEEeCC
Q 010099 322 QYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKD 356 (518)
Q Consensus 322 ~ylS~~ty~Rl~iPellP~ldKVLYLD~DvVV~~D 356 (518)
..++..-..|=.+- -+|+.+.|.|||.|+||..-
T Consensus 181 ~~WaKipalRaAM~-a~PeAEWfWWLDsDALIMNp 214 (453)
T PLN03181 181 SYWAKLPVVRAAML-AHPEAEWIWWVDSDAVFTDM 214 (453)
T ss_pred hhhhHHHHHHHHHH-HCCCceEEEEecCCceeecC
Confidence 44555555553222 26899999999999999865
No 29
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=64.43 E-value=3.5 Score=44.14 Aligned_cols=32 Identities=34% Similarity=0.295 Sum_probs=22.9
Q ss_pred HHHHHHhhhhhhccCCeEEEEecCeEEeCCchHHHc
Q 010099 327 FSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWD 362 (518)
Q Consensus 327 ~ty~Rl~iPellP~ldKVLYLD~DvVV~~DLseLw~ 362 (518)
.+..|+.+=. +|+= ||||+||||.++++.|=+
T Consensus 228 Sdl~RLA~Ly---KYGG-vYLDTDvIvLksl~~l~N 259 (409)
T KOG1928|consen 228 SDLSRLALLY---KYGG-VYLDTDVIVLKSLSNLRN 259 (409)
T ss_pred HHHHHHHHHH---HhCC-EEeeccEEEecccccccc
Confidence 4556665432 2332 799999999999999864
No 30
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=63.05 E-value=42 Score=35.58 Aligned_cols=115 Identities=16% Similarity=0.250 Sum_probs=67.3
Q ss_pred eEEEEEeCCch-hhHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEeccccccchhhHHHhhh
Q 010099 221 HHYVIFSTNVL-ASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHM 299 (518)
Q Consensus 221 ihIv~~sDNvL-aasVvI~Sil~n~~~p~~i~FHIltd~is~~~~~~wf~~~~~~~a~i~v~~i~~f~~~~~~~~~L~ql 299 (518)
+.|++++=|-. ...-+|.|++++....+...++|..|+-..+.... ...+. ..+.++ .+-.+.
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~---v~~~~-~~i~~i--~~~~~~---------- 65 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADV---AKSFG-DGVTHI--QHPPIS---------- 65 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHH---HHhhc-cccEEE--Eccccc----------
Confidence 45777555643 45568899999753335688999999976543321 11121 112211 111100
Q ss_pred ccccceecccccCCCCCCcCccccccHHHHHHHhhhhhhcc--CCeEEEEecCeEEeCCchHHHc
Q 010099 300 FLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQS--LTKVVVLDDDVVVQKDLSALWD 362 (518)
Q Consensus 300 ~~~~~~~~~f~~~~~p~~~~r~~ylS~~ty~Rl~iPellP~--ldKVLYLD~DvVV~~DLseLw~ 362 (518)
..+...+ ... ..|..+..|++.-+-.+|.. +++||+||+|+++--|.-+.++
T Consensus 66 ---------~~~~~~~-~~~-~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~ 119 (334)
T cd02514 66 ---------IKNVNPP-HKF-QGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQ 119 (334)
T ss_pred ---------ccccCcc-ccc-chhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHH
Confidence 0000000 011 13567788888888888864 8999999999999999666554
No 31
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=62.95 E-value=49 Score=36.34 Aligned_cols=118 Identities=14% Similarity=0.301 Sum_probs=63.4
Q ss_pred CCceEEEEEeCC-chhhHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEeccccccchhhHHH
Q 010099 218 PSLHHYVIFSTN-VLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAIL 296 (518)
Q Consensus 218 ~~~ihIv~~sDN-vLaasVvI~Sil~n~~~p~~i~FHIltd~is~~~~~~wf~~~~~~~a~i~v~~i~~f~~~~~~~~~L 296 (518)
...+.|++++-| .-+..-+|.|++++....+.+.+.|--|+-+...... ...|.+ .+..+ +..++.+ +
T Consensus 92 ~~~~pVlV~AcNRp~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~~v---i~~y~~-~v~~i--~~~~~~~-----i 160 (434)
T PF03071_consen 92 EPVIPVLVFACNRPDYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVAEV---IKSYGD-QVTYI--QHPDFSP-----I 160 (434)
T ss_dssp -----EEEEESS-TT-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHHHH---HHGGGG-GSEEE--E-S--S-------
T ss_pred CCcceEEEEecCCcHHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHHHH---HHHhhh-hheee--ecCCcCC-----c
Confidence 445677775556 4455568899999876555677777677765544332 223322 22222 1111100 0
Q ss_pred hhhccccceecccccCCCCC-CcCccccccHHHHHHHhhhhhhc--cCCeEEEEecCeEEeCCchHHHc
Q 010099 297 IHMFLPVEYRVSLLSVDGPS-IHSKMQYISVFSHLHYLLPEIFQ--SLTKVVVLDDDVVVQKDLSALWD 362 (518)
Q Consensus 297 ~ql~~~~~~~~~f~~~~~p~-~~~r~~ylS~~ty~Rl~iPellP--~ldKVLYLD~DvVV~~DLseLw~ 362 (518)
.. .|. ... ..|..++.|+|.-|-.+|. .+++||.|.+|+.|--|.=+.|+
T Consensus 161 ---~~------------~~~~~~~-~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~ 213 (434)
T PF03071_consen 161 ---TI------------PPKEKKF-KGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFS 213 (434)
T ss_dssp ------------------TT-GGG-HHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHH
T ss_pred ---ee------------Ccccccc-cchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHH
Confidence 00 010 011 2467789999999999995 58999999999999999988775
No 32
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=62.75 E-value=22 Score=29.89 Aligned_cols=69 Identities=12% Similarity=0.195 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhhccc--CCCCCCccHHHHHHHHHHHHHHhhcCCCc-chhHHHHHHHHHHHhHHHHHHH
Q 010099 101 RALRQNIQEVERVLSESA--TDVDLPPGIEKKIQRMEAAITKAKSVPVD-CSNVDKKFRQILDMTNDEANFH 169 (518)
Q Consensus 101 ~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~m~~~~~~~~~~~~~-~~~~~~kl~~~~~~~e~~~~~~ 169 (518)
+++...|+--|+++|.|+ .|.++...+.+.++..+.-+.+|++...+ -..+...=.+.|+..|-+++.+
T Consensus 6 kQve~aVetAqkmvG~AT~smdp~~Le~A~qAve~Ar~ql~~a~~~at~lD~~Fl~~~~~~L~~~eHQL~Ea 77 (79)
T PF10819_consen 6 KQVEMAVETAQKMVGQATMSMDPDQLEHATQAVEDAREQLSQAKSHATGLDEPFLQQSEQLLDDCEHQLDEA 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 567778889999999995 45557788888899999888888877632 1245556667777777777654
No 33
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=60.70 E-value=1.2e+02 Score=31.33 Aligned_cols=112 Identities=11% Similarity=0.083 Sum_probs=63.3
Q ss_pred hhccCCeEEEEecCeEEeCCch-HHHcccCCCCeeeeeccccc-----ch--h---hhhhhhccCCCCCCCCccccceEE
Q 010099 337 IFQSLTKVVVLDDDVVVQKDLS-ALWDINMGGKVNGAVQSCSV-----SL--G---QLKSYLGENSYDKNSCAWMSGLNI 405 (518)
Q Consensus 337 llP~ldKVLYLD~DvVV~~DLs-eLw~iDL~g~~igAV~d~~~-----~~--~---~~~~yl~~~~~~~~~~yfNsGVlL 405 (518)
++.++|=+.++|+|+++++.+. |.. |..+|...--.- .+ + .-..|+ .++.+.-|+.+|++=
T Consensus 120 ~~~e~DYlF~~dvd~~F~~~ig~E~L-----g~lva~lHp~~y~~~~~~fpYERrp~S~AyI---p~~eGdfYy~Ga~~G 191 (271)
T cd02515 120 IGHEVDYLFCMDVDMVFQGPFGVETL-----GDSVAQLHPWWYGKPRKQFPYERRPSSAAYI---PEGEGDFYYHGAVFG 191 (271)
T ss_pred hcccCCEEEEeeCCceEeecCCHHHh-----hhhheecChhhhcCCCCCCCCcCCCCccccc---cCCCCCeEEeeeecC
Confidence 3458999999999999999987 222 234454432110 00 0 001222 234556677777663
Q ss_pred EechHHHHhhHHHHHHHHHHH-HccCC--cchhhhhchhhhhhccCc-EEEcCCccccc
Q 010099 406 VDLARWRELDLTKTYQRLVRE-VSMGE--ESKEAVALRGSLLTFQDL-VYALDGVWALS 460 (518)
Q Consensus 406 iNL~~WR~~nit~~~~~~l~~-~~~~~--~~~dQd~Ln~~li~f~~~-i~~Lp~~WN~~ 460 (518)
=-..+..+ +++.|..-+.. ...+. .++|-.=||-. .+.++ ++.|++.|...
T Consensus 192 G~~~~vl~--l~~~c~~~i~~D~~n~I~A~wHDESHLNkY--f~~~Kp~KiLSPeY~w~ 246 (271)
T cd02515 192 GSVEEVYR--LTRACHEGILADKANGIEARWHDESHLNKY--FLLHKPTKVLSPEYLWD 246 (271)
T ss_pred ccHHHHHH--HHHHHHHHHHHHHhCCceEEeecHhHhHHH--HhhCCCCeecChhhcCC
Confidence 22332222 55666555443 22232 56677788853 33444 89999998876
No 34
>KOG1950 consensus Glycosyl transferase, family 8 - glycogenin [Carbohydrate transport and metabolism]
Probab=56.19 E-value=11 Score=40.14 Aligned_cols=142 Identities=17% Similarity=0.055 Sum_probs=73.9
Q ss_pred hccCCeEEEEecCeEEeCCchHHHcccCCCCeeeeecccccc-----hhhhh----------hhhc-c-CCCC--CCCCc
Q 010099 338 FQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVS-----LGQLK----------SYLG-E-NSYD--KNSCA 398 (518)
Q Consensus 338 lP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~~~-----~~~~~----------~yl~-~-~~~~--~~~~y 398 (518)
|.++++++|+|+|+-+..++..++++-.. .-.+...|..- ...+. .++. - .-+. ...+.
T Consensus 122 ~~~~~a~i~~~~~i~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~f~~~~~~~~~~~l~~~ 199 (369)
T KOG1950|consen 122 LIEDGAAIYLVDDIQRFRNDDANFDVPNE--LNYAKLYMFQLDFYSKLVKIDADDCILKNDDLLFSNWPDLFATNILPLI 199 (369)
T ss_pred eeccCceEEEecchhhccCccccccccch--hcccccceeeecccccceEEeccchhcCChhhhhhhchhhccCCCccce
Confidence 45789999999999999999998876432 12222222210 00000 0111 0 0011 13456
Q ss_pred cccceEEEechHHHHhhHHHHHHHHHHHH--ccCCcchhhhhchhhhhhccCcEEEcCCccccc-CCCCCCC----CCHh
Q 010099 399 WMSGLNIVDLARWRELDLTKTYQRLVREV--SMGEESKEAVALRGSLLTFQDLVYALDGVWALS-GLGHDYG----LNIE 471 (518)
Q Consensus 399 fNsGVlLiNL~~WR~~nit~~~~~~l~~~--~~~~~~~dQd~Ln~~li~f~~~i~~Lp~~WN~~-~lg~~~~----~~~~ 471 (518)
||+|++++-..- ..+..+.... .......+||++|. .|...-.+.|...|.. +..+... +...
T Consensus 200 ~n~~~~v~~ps~-------~~~~~~~~~~~~~~~~~~~~q~~l~~---~f~~~~~~~~~~~n~~~~~~~~~p~~~~l~~~ 269 (369)
T KOG1950|consen 200 FNSGLLVFEPSL-------CNYKDLMEFSEEFESYNGADQGFLHL---IFSWIPDRPPPSVNLNLAKLWRHPKKNDLSRA 269 (369)
T ss_pred eccCccccCCCc-------cchhhHHHhhcccCCCCCccchhhHH---HhhcccCCCcccccccccccccCccccchhhc
Confidence 999999985432 2222222221 12345789999983 4443333777777765 3333211 1111
Q ss_pred hhcCCEEEEecCCCCCcccC
Q 010099 472 AIKKAAVLHYNGNMKPWLEL 491 (518)
Q Consensus 472 ~~~~~~IIHY~G~~KPW~~~ 491 (518)
....-..+||.|..|||...
T Consensus 270 ~~~~~~~~~y~~~~~p~~~~ 289 (369)
T KOG1950|consen 270 SSVLRYALHYLGANKPELCY 289 (369)
T ss_pred ccccchhhhccccCCCCccc
Confidence 11223346999976887644
No 35
>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 6 GT6 from CAZY comprises enzymes with three known activities; alpha-1,3-galactosyltransferase (2.4.1.151 from EC); alpha-1,3 N-acetylgalactosaminyltransferase (2.4.1.40 from EC); alpha-galactosyltransferase (2.4.1.37 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane; PDB: 2Y7A_B 2O1G_A 1R82_A 2RJ1_A 3IOJ_B 2RJ4_A 3I0C_A 3SX8_A 1ZJ1_A 3I0E_A ....
Probab=54.06 E-value=1.7e+02 Score=31.12 Aligned_cols=186 Identities=11% Similarity=0.120 Sum_probs=88.6
Q ss_pred EeCCchhh-HHHHHHHHHhcCCCCceEEEEEeCCCCHHH-HHHHHHhccCCCceEEEEEecccc-ccchhhHHHhhhccc
Q 010099 226 FSTNVLAS-SVVINSTVLCARESKNQVFHVLTDGQNYFA-MKLWFFRNTFKEATVQVLNIEQLN-LESHDKAILIHMFLP 302 (518)
Q Consensus 226 ~sDNvLaa-sVvI~Sil~n~~~p~~i~FHIltd~is~~~-~~~wf~~~~~~~a~i~v~~i~~f~-~~~~~~~~L~ql~~~ 302 (518)
+.-.|..- ---+.|.=++=-...+++|||+||.-..-. .. .-++.++.++.+.... |
T Consensus 107 A~GkY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~p~~vP~i~------l~~~r~~~V~~v~~~~~W-------------- 166 (337)
T PF03414_consen 107 ATGKYIVFLKDFLESAEKHFMVGHRVIYYVFTDQPSKVPRIE------LGPGRRLKVFEVQEEKRW-------------- 166 (337)
T ss_dssp E-CCHHHHHHHHHHHHHHHBSTTSEEEEEEEES-GGGS------------TTEEEEEEE-SGGSSH--------------
T ss_pred ecccHHHHHHHHHHhHHHhccCCcEEEEEEEeCchhhCCccc------cCCCceeEEEEecccCCC--------------
Confidence 44444442 235566655655667888999998764211 11 1124456666554322 1
Q ss_pred cceecccccCCCCCCcCccccccH---HHHHHHhhhhhhccCCeEEEEecCeEEeCCchHHHcccCCCCeeeeecccccc
Q 010099 303 VEYRVSLLSVDGPSIHSKMQYISV---FSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVS 379 (518)
Q Consensus 303 ~~~~~~f~~~~~p~~~~r~~ylS~---~ty~Rl~iPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~~~ 379 (518)
.++|+ -+...+....++.++|=+.++|+|+++++++.. + .| |..+|...--.-.
T Consensus 167 -------------------qd~sm~Rm~~i~~~i~~~~~~EvDYLFc~dvd~~F~~~vGv--E-~L-g~lva~LHp~~y~ 223 (337)
T PF03414_consen 167 -------------------QDISMMRMEMISEHIEQHIQHEVDYLFCMDVDMVFQDHVGV--E-IL-GDLVATLHPWFYF 223 (337)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHCHHHH-SEEEEEESSEEE-S-B-G--G-G--SSEEEEESTTTTT
T ss_pred -------------------ccchhHHHHHHHHHHHHHHhhcCCEEEEEecceEEecccCH--H-HH-HHHHHHhCHHHHC
Confidence 11121 112222334456689999999999999999874 1 11 5666666432210
Q ss_pred -----hh-----hhhhhhccCCCCCCCCccccceEEEechHHHHhhHHHHHHHHHHH-Hcc--CCcchhhhhchhhhhhc
Q 010099 380 -----LG-----QLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVRE-VSM--GEESKEAVALRGSLLTF 446 (518)
Q Consensus 380 -----~~-----~~~~yl~~~~~~~~~~yfNsGVlLiNL~~WR~~nit~~~~~~l~~-~~~--~~~~~dQd~Ln~~li~f 446 (518)
+. .-..|+ .++.+..|+.+|++==-..+-. ++++.|+.-+.. ... ...++|-.=||-.+ ..
T Consensus 224 ~~~~~FpYERrp~S~AyI---p~~eGDfYY~ga~fGGt~~~vl--~Lt~~c~~~i~~D~~n~I~A~WhDESHLNKYf-l~ 297 (337)
T PF03414_consen 224 KPRESFPYERRPKSQAYI---PYGEGDFYYHGAFFGGTVEEVL--RLTEACHQGIMQDKANGIEALWHDESHLNKYF-LY 297 (337)
T ss_dssp STGGGS--B-STTSTTB-----TT--S--EECCEEEECHHHHH--HHHHHHHHHHHHHHHTT---TTCHHHHHHHHH-HH
T ss_pred CChhhCccccCccccccc---cCCCCCeEEeceecCCcHHHHH--HHHHHHHHHHHhhhhcCceEeccchhhhHHHH-hh
Confidence 10 001232 2345667888886653333333 366777665543 222 23466777888522 22
Q ss_pred cCcEEEcCCccccc
Q 010099 447 QDLVYALDGVWALS 460 (518)
Q Consensus 447 ~~~i~~Lp~~WN~~ 460 (518)
+.-++.|++.|..-
T Consensus 298 ~KPtKvLSPEY~Wd 311 (337)
T PF03414_consen 298 HKPTKVLSPEYCWD 311 (337)
T ss_dssp S--SEEE-GGGSBS
T ss_pred CCCceecCHHHccC
Confidence 44478899988765
No 36
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=53.70 E-value=35 Score=33.39 Aligned_cols=113 Identities=12% Similarity=0.122 Sum_probs=78.8
Q ss_pred hhcccchhHHHHHhHHHHHHHHhhhhhhcCCC-CchHHHHHHHHHHHHHHHHhhcc--cCCCCCCccHHHHHHHHHHHHH
Q 010099 63 EHREEMKDTMVKKLKDQLFVARAYYPSIAKLP-SQDKLTRALRQNIQEVERVLSES--ATDVDLPPGIEKKIQRMEAAIT 139 (518)
Q Consensus 63 ~~~~~~~d~~~~~~~dq~~~a~~y~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~m~~~~~ 139 (518)
|..+.|-|..++.|.++|.-|+.=++.+.... .-.+-..++...+.+++.-...| ..+.||-+.+.......+..+.
T Consensus 22 EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~ 101 (221)
T PF04012_consen 22 EDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAE 101 (221)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 44556888899999999988886543222211 22223335555566665444444 4456688888888888888888
Q ss_pred HhhcCCCcchhHHHHHHHHHHHhHHHHHHHhhHHHH
Q 010099 140 KAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAF 175 (518)
Q Consensus 140 ~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~~ 175 (518)
..+...........+|+.-+..+|.++...+.+..-
T Consensus 102 ~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~ 137 (221)
T PF04012_consen 102 RLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREE 137 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888999999999999988876555443
No 37
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=52.27 E-value=56 Score=28.96 Aligned_cols=75 Identities=23% Similarity=0.225 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHHHHHHHhhcCCCc-chhHHHHHHHHHHHhHHHHHHHhhHH
Q 010099 97 DKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVD-CSNVDKKFRQILDMTNDEANFHMKQS 173 (518)
Q Consensus 97 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~-~~~~~~kl~~~~~~~e~~~~~~~~~~ 173 (518)
.++.-||+.=+.++|.+|..+...+. .++.+.=...+..+.+++.-.-+ -..+..+-|++++.+|+-++.+-=|+
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~--~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~PWq~ 86 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAG--DEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENPWQG 86 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchh--hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchH
Confidence 67888999999999999998876432 22222223344455555443322 26789999999999999998766554
No 38
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=50.54 E-value=43 Score=33.05 Aligned_cols=112 Identities=11% Similarity=0.088 Sum_probs=74.0
Q ss_pred hhcccchhHHHHHhHHHHHHHHhhhhhh-cCCCCchHHHHHHHHHHHHHHHHhhcc--cCCCCCCccHHHHHHHHHHHHH
Q 010099 63 EHREEMKDTMVKKLKDQLFVARAYYPSI-AKLPSQDKLTRALRQNIQEVERVLSES--ATDVDLPPGIEKKIQRMEAAIT 139 (518)
Q Consensus 63 ~~~~~~~d~~~~~~~dq~~~a~~y~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~m~~~~~ 139 (518)
|..+.|-|..++.|+|+|.-||.=++.+ |..+.-.+-..++..++.+++.--..| ..+.+|-+.+......-+..+.
T Consensus 23 EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~ 102 (219)
T TIGR02977 23 EDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAE 102 (219)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 4455688899999999999888654322 221222333446667777776433333 3455688888766666666666
Q ss_pred HhhcCCCcchhHHHHHHHHHHHhHHHHHHHhhHHH
Q 010099 140 KAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSA 174 (518)
Q Consensus 140 ~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~ 174 (518)
..+...........+|++-+..+|.++...+.+..
T Consensus 103 ~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 103 ALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777778899999999988876655444
No 39
>PRK10698 phage shock protein PspA; Provisional
Probab=44.80 E-value=58 Score=32.42 Aligned_cols=113 Identities=10% Similarity=0.088 Sum_probs=74.7
Q ss_pred hhcccchhHHHHHhHHHHHHHHhhhhh-hcCCCCchHHHHHHHHHHHHHHHHhhcc--cCCCCCCccHHHHHHHHHHHHH
Q 010099 63 EHREEMKDTMVKKLKDQLFVARAYYPS-IAKLPSQDKLTRALRQNIQEVERVLSES--ATDVDLPPGIEKKIQRMEAAIT 139 (518)
Q Consensus 63 ~~~~~~~d~~~~~~~dq~~~a~~y~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~m~~~~~ 139 (518)
|..+.|-+.+++.|+|++.-+|.=++. +|.-+.-.+-..++..++.++++--.-| ..+.+|-+.++..-+.....+.
T Consensus 23 EDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~ 102 (222)
T PRK10698 23 EDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIA 102 (222)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 444558888999999999877654322 2222223333446666677666433333 3456688887766566667777
Q ss_pred HhhcCCCcchhHHHHHHHHHHHhHHHHHHHhhHHHH
Q 010099 140 KAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAF 175 (518)
Q Consensus 140 ~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~~ 175 (518)
..+...........+|++-+..++.++...+.+..-
T Consensus 103 ~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~ 138 (222)
T PRK10698 103 TLEHEVTLVDETLARMKKEIGELENKLSETRARQQA 138 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777788899999999999988776554444
No 40
>PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif. The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases [].
Probab=42.12 E-value=13 Score=31.93 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=26.9
Q ss_pred ccccHHHHHHHhhhhhhccCCeEEEEecCeEEeCCc-hHH
Q 010099 322 QYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDL-SAL 360 (518)
Q Consensus 322 ~ylS~~ty~Rl~iPellP~ldKVLYLD~DvVV~~DL-seL 360 (518)
.+.....++|+.+-.... =||+|.|+++.++| .++
T Consensus 61 ~~~~~sD~~R~~~L~~~G----GiY~D~D~~~~rpl~~~~ 96 (103)
T PF04488_consen 61 NYAHKSDLLRYLVLYKYG----GIYLDLDVICLRPLDDPW 96 (103)
T ss_pred chHHHHHHHHHHHHHHcC----cEEEeCccccCcchhhhh
Confidence 345578889998865443 38999999999999 554
No 41
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=40.32 E-value=21 Score=35.55 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.6
Q ss_pred hhhhhhccCCeEEEEecCeEEeCC
Q 010099 333 LLPEIFQSLTKVVVLDDDVVVQKD 356 (518)
Q Consensus 333 ~iPellP~ldKVLYLD~DvVV~~D 356 (518)
.+..+||+++-||+||+||.|...
T Consensus 34 vva~~L~~~~~vlflDaDigVvNp 57 (222)
T PF03314_consen 34 VVAKILPEYDWVLFLDADIGVVNP 57 (222)
T ss_pred HHHHHhccCCEEEEEcCCceeecC
Confidence 466778899999999999999765
No 42
>PRK10132 hypothetical protein; Provisional
Probab=35.43 E-value=1.7e+02 Score=26.02 Aligned_cols=76 Identities=13% Similarity=0.118 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhHHHHHHHhhHHH
Q 010099 97 DKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSA 174 (518)
Q Consensus 97 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~ 174 (518)
++|..||+.=+.++|.+|.++..++ -..+.+.=...+..+..|++-..+-..+..+.+...+.+++-++.+-=++.
T Consensus 15 e~L~~Dl~~L~~~le~ll~~~~~~~--~~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~sv 90 (108)
T PRK10132 15 QDIQNDVNQLADSLESVLKSWGSDA--KGEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSV 90 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 6888899999999999987775432 123333335566677777766655555667779999999999987655543
No 43
>PF05397 Med15_fungi: Mediator complex subunit 15; InterPro: IPR008626 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family represents subunit 15 of the Mediator complex in fungi. It contains Saccharomyces cerevisiae GAL11 (Med15) protein. Gal11 (Med15) and Sin4 (Med16) proteins are S. cerevisiae global transcription factors that regulate transcription of a variety of genes, both positively and negatively. Gal11, in a major part, functions in the activation of transcription, whereas Sin4 has an opposite role [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=31.56 E-value=53 Score=29.46 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=39.3
Q ss_pred hhhcccchhHHHHHhHHHHHHHHhhhhhhcCCCCchHHHHHHHHHHHHHHHHh
Q 010099 62 REHREEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVL 114 (518)
Q Consensus 62 ~~~~~~~~d~~~~~~~dq~~~a~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (518)
-|.+..+++ .++.+.|.+....+++|.++++.+|+..+|+|-+=-=-+.+.+
T Consensus 31 ~eeK~~i~~-~l~~~~~m~~~vd~li~~f~~lt~ne~~~k~LlqMr~~~~~q~ 82 (115)
T PF05397_consen 31 PEEKAAIRQ-QLQEIQDMLARVDSLIPWFYKLTKNEENTKRLLQMRIMLKEQF 82 (115)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 455666666 4478889999999999999999999999998866333344444
No 44
>KOG4748 consensus Subunit of Golgi mannosyltransferase complex [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=30.24 E-value=44 Score=35.80 Aligned_cols=172 Identities=15% Similarity=0.114 Sum_probs=86.8
Q ss_pred ccccHHHHHHHhhhhhhccCCeEEEEecCeEEeCCchHHHcccCCC------------Ceeeeecccccchhhh-hhhhc
Q 010099 322 QYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGG------------KVNGAVQSCSVSLGQL-KSYLG 388 (518)
Q Consensus 322 ~ylS~~ty~Rl~iPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g------------~~igAV~d~~~~~~~~-~~yl~ 388 (518)
.+++.+-..|=.+-+ +|+.+-|-+||.|.++..---+|=+.-++. +++.+..........+ ..++.
T Consensus 158 ~~W~KiP~Ir~tM~k-yP~AeWIWWlD~DAlimn~~lsL~~~ilk~~~L~~~l~~nd~~~~~~~n~~~~~~~~~~~d~~~ 236 (364)
T KOG4748|consen 158 GVWAKLPAIRQTMLK-YPDAEWIWWLDQDALIMNPDLSLQDHILKPENLVTHLLRNDQKSINPLNIFRLRPRTPSLDDLE 236 (364)
T ss_pred chhHHhHHHHHHHHH-CCCCcEEEEecccchhhCcccchhHHhcCHHHHHHhhccccccccccCCccccccccccccchh
Confidence 345555544433322 489999999999999976554443322221 2222221100000000 11111
Q ss_pred cCC--CCCCCCccccceEEEechHHHHhhHHHHHHHHHHH---HccCCcchhhhhchhhh---hhccCcEEEcCCcc-cc
Q 010099 389 ENS--YDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVRE---VSMGEESKEAVALRGSL---LTFQDLVYALDGVW-AL 459 (518)
Q Consensus 389 ~~~--~~~~~~yfNsGVlLiNL~~WR~~nit~~~~~~l~~---~~~~~~~~dQd~Ln~~l---i~f~~~i~~Lp~~W-N~ 459 (518)
... ++.+..++|+|=+||--.+|- .-+++++.+ ........+|+++-.++ -...+.|..|+.++ |.
T Consensus 237 ~~~~ii~qD~nG~naGSfLirns~~~-----~~llD~w~dp~l~~~~~~~~Eq~al~~~~e~h~~l~~~vgilp~r~ins 311 (364)
T KOG4748|consen 237 DIAFIIPQDCNGINAGSFLIRNSEWG-----RLLLDAWNDPLLYELLWGQKEQDALGHFLENHPQLHSHVGILPLRYINS 311 (364)
T ss_pred hhceecccCCCCccccceEEecCccc-----hhHHHhccCHHHHhhccchHHHHHHHHHHhhchhhhhheeeccHHHHhc
Confidence 111 234567899999998554433 334444322 11223456777765322 12346667777665 32
Q ss_pred cCCCCCCCCCHhhhcCCEEEEecCCCCCcccCCccchHHHHHHHHhhCh
Q 010099 460 SGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQED 508 (518)
Q Consensus 460 ~~lg~~~~~~~~~~~~~~IIHY~G~~KPW~~~~~~~y~~~W~~Y~~~s~ 508 (518)
..-|. +.+ ...+-+-++||.|= |.. ....+.|.+|.+..+
T Consensus 312 ~~~~~-~~~--g~~egdlvvhFaGC---~~~---~~C~~~~~~y~~~~~ 351 (364)
T KOG4748|consen 312 YPNGA-PGY--GYEEGDLVVHFAGC---YVR---NRCLEEMEKYFNLID 351 (364)
T ss_pred CCCCC-CCC--ccccCCeEEEeccc---ccH---hHHHHHHHHHHHHHH
Confidence 21110 111 22356789999993 443 345677888877643
No 45
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=30.22 E-value=3e+02 Score=29.39 Aligned_cols=107 Identities=20% Similarity=0.176 Sum_probs=59.1
Q ss_pred HHHHhHHHHHHHHhhhhhhcCCCCch----HHHHHHHHHHHHHH-------HHhhcccCCC-CCCccHHHHHHHHHHHHH
Q 010099 72 MVKKLKDQLFVARAYYPSIAKLPSQD----KLTRALRQNIQEVE-------RVLSESATDV-DLPPGIEKKIQRMEAAIT 139 (518)
Q Consensus 72 ~~~~~~dq~~~a~~y~~~~~~~~~~~----~~~~~l~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~m~~~~~ 139 (518)
--.+|+.||+.++. + ++|.++.- .+++-++.+-+-+| +-.+|-.-.+ .|-++..+.++--..+..
T Consensus 107 qnqkL~nqL~~~~~-v--f~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~ 183 (401)
T PF06785_consen 107 QNQKLKNQLFHVRE-V--FMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELND 183 (401)
T ss_pred hHHHHHHHHHHHHH-H--HHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999998 3 78888663 33333333222222 2222221110 022222222222222333
Q ss_pred HhhcCCCcchhHHHHHHHHHHHhHHHHHHHhhHHHHHHHHhh
Q 010099 140 KAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAV 181 (518)
Q Consensus 140 ~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~ 181 (518)
.=+.-.+...+|.+|-.+-+..+|.+|+-.+-.-.=|-||+.
T Consensus 184 eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~ 225 (401)
T PF06785_consen 184 EYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQLES 225 (401)
T ss_pred HhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334445788899999999999999999875554444555554
No 46
>PRK10404 hypothetical protein; Provisional
Probab=29.96 E-value=2.2e+02 Score=25.01 Aligned_cols=78 Identities=17% Similarity=0.109 Sum_probs=49.9
Q ss_pred CCchHHHHHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHHHHHHHhhc-CCCcchhHHHHHHHHHHHhHHHHHHHhhH
Q 010099 94 PSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKS-VPVDCSNVDKKFRQILDMTNDEANFHMKQ 172 (518)
Q Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~-~~~~~~~~~~kl~~~~~~~e~~~~~~~~~ 172 (518)
.+.+++..||+.=+.++|.+|.++..++ -..+.+.=...+..+..+|. +..--..+..+.|++.+.+++-++.+-=|
T Consensus 5 ~~~~~l~~dl~~L~~dle~Ll~~~~~~a--~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~Pw~ 82 (101)
T PRK10404 5 FGDTRIDDDLTLLSETLEEVLRSSGDPA--DQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPWQ 82 (101)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 4668888999999999999998876542 12222222344455555553 22222245566799999999999876555
Q ss_pred H
Q 010099 173 S 173 (518)
Q Consensus 173 ~ 173 (518)
+
T Consensus 83 a 83 (101)
T PRK10404 83 G 83 (101)
T ss_pred H
Confidence 4
No 47
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=29.88 E-value=1.3e+02 Score=30.13 Aligned_cols=110 Identities=16% Similarity=0.179 Sum_probs=74.5
Q ss_pred hhcccchhHHHHHhHHHHHHHHhhhhhhcCCC-CchHHHH---HHHHHHHHHHHHhhcc--cCCCCCCccHHHHHHHHHH
Q 010099 63 EHREEMKDTMVKKLKDQLFVARAYYPSIAKLP-SQDKLTR---ALRQNIQEVERVLSES--ATDVDLPPGIEKKIQRMEA 136 (518)
Q Consensus 63 ~~~~~~~d~~~~~~~dq~~~a~~y~~~~~~~~-~~~~~~~---~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~m~~ 136 (518)
|..+.|-|..++-|+++|.-||-= +|+.. ...+|-+ ++..++.++|.---.| ..+.+|-+.+...+...+.
T Consensus 23 EDp~~~l~Q~ird~~~~l~~ar~~---~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~ 99 (225)
T COG1842 23 EDPEKMLEQAIRDMESELAKARQA---LAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLED 99 (225)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 344467788888899988888765 34444 3334444 4445555554222222 3445688888888888888
Q ss_pred HHHHhhcCCCcchhHHHHHHHHHHHhHHHHHHHhhHHHH
Q 010099 137 AITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAF 175 (518)
Q Consensus 137 ~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~~ 175 (518)
.+..-++..-.......+|+..+..+|.++...+.+-.-
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~ 138 (225)
T COG1842 100 LAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEA 138 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888878777788888899999999999988765554443
No 48
>PRK10807 paraquat-inducible protein B; Provisional
Probab=29.46 E-value=1.7e+02 Score=33.15 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=24.1
Q ss_pred CCccHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhHHHHHHHhhHH
Q 010099 123 LPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQS 173 (518)
Q Consensus 123 ~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~ 173 (518)
||.++.+.++.++.++..+.. -+.....|+++++.+++-++..+.-.
T Consensus 474 Lp~~L~~TL~~l~~~l~~~~~----~s~~~~~l~~tl~~l~~~~r~lr~l~ 520 (547)
T PRK10807 474 LPADMQKTLRELNRSMQGFQP----GSPAYNKMVADMQRLDQVLRELQPVL 520 (547)
T ss_pred HHHHHHHHHHHHHHHHhhcCC----CChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554331 23344556666666666665543333
No 49
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=29.45 E-value=98 Score=30.34 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=19.9
Q ss_pred ccCCeEEEEecCeEEeCC-chHHHc
Q 010099 339 QSLTKVVVLDDDVVVQKD-LSALWD 362 (518)
Q Consensus 339 P~ldKVLYLD~DvVV~~D-LseLw~ 362 (518)
...+=|+++|+|+++..| |..++.
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~ 96 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYK 96 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHH
Confidence 367899999999999988 566764
No 50
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=28.71 E-value=71 Score=33.08 Aligned_cols=40 Identities=23% Similarity=0.300 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHHHHHHhhcCC-----------CcchhHHHHHHHHHHHhHH
Q 010099 125 PGIEKKIQRMEAAITKAKSVP-----------VDCSNVDKKFRQILDMTND 164 (518)
Q Consensus 125 ~~~~~~~~~m~~~~~~~~~~~-----------~~~~~~~~kl~~~~~~~e~ 164 (518)
++|.+.|+.++++|.-+|+.. +|...=-+||..+|++||-
T Consensus 120 KEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLqsMEl 170 (305)
T PF15290_consen 120 KEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQSMEL 170 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHHH
Confidence 455666777777776666544 5555566778888888873
No 51
>PRK15384 type III secretion system protein; Provisional
Probab=27.25 E-value=29 Score=35.31 Aligned_cols=32 Identities=16% Similarity=0.311 Sum_probs=24.0
Q ss_pred CeEEEEecCeEEeCCchHHHcccCCCCeeeeecccc
Q 010099 342 TKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCS 377 (518)
Q Consensus 342 dKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~ 377 (518)
+-+||||+|||+.+-|.-|+--| | ||+--||.
T Consensus 217 ~GCIYLDaDMilT~KLG~ly~PD--G--IavhV~r~ 248 (336)
T PRK15384 217 SGCIYLDADMIITEKLGGIYIPD--G--IAVHVERI 248 (336)
T ss_pred CceEEeeccceeecccccEEcCC--c--eEEEEEec
Confidence 46899999999999999998544 3 44444553
No 52
>PRK15383 type III secretion system protein; Provisional
Probab=27.04 E-value=30 Score=35.12 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=24.7
Q ss_pred CCeEEEEecCeEEeCCchHHHcccCCCCeeeeecccc
Q 010099 341 LTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCS 377 (518)
Q Consensus 341 ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~ 377 (518)
-+-+||||+|||+.+-|.-|+--| | ||+--||.
T Consensus 219 ~~GCIYLD~DMilT~KLG~ly~PD--G--IavhV~r~ 251 (335)
T PRK15383 219 GGGCIYLDADMLLTDKLGTLYLPD--G--IAIHVSRK 251 (335)
T ss_pred CCceEEeecceeeecccccEEcCC--c--eEEEEEec
Confidence 457999999999999999998544 3 44444543
No 53
>PRK15382 non-LEE encoded effector protein NleB; Provisional
Probab=26.78 E-value=31 Score=35.06 Aligned_cols=33 Identities=21% Similarity=0.475 Sum_probs=24.7
Q ss_pred CCeEEEEecCeEEeCCchHHHcccCCCCeeeeecccc
Q 010099 341 LTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCS 377 (518)
Q Consensus 341 ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~ 377 (518)
-+-+||||+|||+.+-|.-|+--| | ||+--||.
T Consensus 211 ~~GCIYLD~DMilT~KLG~ly~PD--G--IavhV~r~ 243 (326)
T PRK15382 211 CEGCIYLDADMIITDKLGVLYAPD--G--IAVHVDCN 243 (326)
T ss_pred CCceEEeecceeeecccccEEcCC--c--eEEEEEec
Confidence 357999999999999999998544 3 44444543
No 54
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=26.71 E-value=2.3e+02 Score=27.24 Aligned_cols=59 Identities=17% Similarity=0.340 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHh-hcccCCCCCCccHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhHHH
Q 010099 100 TRALRQNIQEVERVL-SESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDE 165 (518)
Q Consensus 100 ~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~ 165 (518)
..-|..||.++|+.+ |+......-|..+...+......|..|.+.. .++++++...||-
T Consensus 7 l~~Le~Ri~~LE~~v~G~~~~~~~~~~~v~~~L~~~~~~L~~~~s~r-------e~i~~l~k~~~eL 66 (174)
T PF07426_consen 7 LDILEKRIEELERRVYGENGSKEGQPEKVIDSLLSVQSALNSAASKR-------ERIKELFKRIEEL 66 (174)
T ss_pred HHHHHHHHHHHHHHHcCCCccccCCchHHHHHHHHHHHHHHHHHccc-------HHHHHHHHHHHHH
Confidence 356889999999887 6544444446666666777777777766655 4455555555554
No 55
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=25.93 E-value=76 Score=37.21 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=27.0
Q ss_pred HHHHhhhhhhcCCCCchHHHHHHHHHHHHHHHHhhcc
Q 010099 81 FVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSES 117 (518)
Q Consensus 81 ~~a~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 117 (518)
+-|+.| |---+.....+...|++.||+|++.+|+..
T Consensus 245 f~a~~y-p~p~~~~er~~~~~~v~~ri~DL~~Vl~~t 280 (829)
T KOG2189|consen 245 FGATLY-PCPESPEERKEMLLEVNTRISDLQTVLDQT 280 (829)
T ss_pred cCcEee-cCCCChHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 356666 533333466889999999999999999876
No 56
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=25.00 E-value=67 Score=28.90 Aligned_cols=39 Identities=23% Similarity=0.608 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCccHH----HHHHHHHHHHHHhhcC
Q 010099 102 ALRQNIQEVERVLSESATDVDLPPGIE----KKIQRMEAAITKAKSV 144 (518)
Q Consensus 102 ~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~m~~~~~~~~~~ 144 (518)
+|+.+|++++|+|... +||+.+. ..+++++..+..+...
T Consensus 1 klK~riRdieRLL~r~----~Lp~~vR~~~Er~L~~L~~~l~~~~~~ 43 (114)
T PF10153_consen 1 KLKKRIRDIERLLKRK----DLPADVRVEKERELEALKRELEEAERK 43 (114)
T ss_pred CHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999776 5777654 4456666666665443
No 57
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=23.21 E-value=84 Score=20.46 Aligned_cols=17 Identities=47% Similarity=0.683 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhhcc
Q 010099 101 RALRQNIQEVERVLSES 117 (518)
Q Consensus 101 ~~l~~~~~~~~~~~~~~ 117 (518)
..|+.+|+++|+-|++.
T Consensus 4 ~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 4 NRLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46899999999988764
No 58
>PF11380 DUF3184: Protein of unknown function (DUF3184); InterPro: IPR021520 This eukaryotic family of proteins has no known function. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=22.90 E-value=2.1e+02 Score=32.72 Aligned_cols=22 Identities=9% Similarity=0.400 Sum_probs=18.2
Q ss_pred CCeEEEEecCeEEeCCchH--HHc
Q 010099 341 LTKVVVLDDDVVVQKDLSA--LWD 362 (518)
Q Consensus 341 ldKVLYLD~DvVV~~DLse--Lw~ 362 (518)
-+..||+-+|+.+.+++.. +|+
T Consensus 102 SE~FIYfNDD~F~~rpV~p~DFF~ 125 (691)
T PF11380_consen 102 SEHFIYFNDDYFFNRPVDPTDFFN 125 (691)
T ss_pred cceeEEecCCEEEcCcCCHHHhhc
Confidence 3689999999999999875 554
No 59
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=22.23 E-value=1.2e+02 Score=30.52 Aligned_cols=142 Identities=17% Similarity=0.315 Sum_probs=81.0
Q ss_pred cceehhhcccchhHHHHHhHHHHHHHHhhhhhhcCCC-CchHHHHHHHHHHHHHHHH-----------hhcc--cCCCCC
Q 010099 58 CLWRREHREEMKDTMVKKLKDQLFVARAYYPSIAKLP-SQDKLTRALRQNIQEVERV-----------LSES--ATDVDL 123 (518)
Q Consensus 58 ~~~~~~~~~~~~d~~~~~~~dq~~~a~~y~~~~~~~~-~~~~~~~~l~~~~~~~~~~-----------~~~~--~~~~~~ 123 (518)
.-|..|.. .+.+ -+++++.|+-..++|...+.+.- ++.+-..+|.++|.+++.. +.+- -...|+
T Consensus 45 d~~~~e~~-~L~~-e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~ 122 (251)
T PF11932_consen 45 DQWDDEKQ-ELLA-EYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDL 122 (251)
T ss_pred HHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34555522 2333 57888899999999865444433 3333344666666666522 2222 234567
Q ss_pred CccHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhHHHHHHHhhHHHHHHHHhhhcCCcccchhhhhccHHHhcCC
Q 010099 124 PPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSP 203 (518)
Q Consensus 124 ~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rl~~ey~~~~ 203 (518)
|-...++.+.++.+-....+.. -.+..|+|.++.+...++..-.+-+.+=..|...|-|..--+|-+=-..=||.++
T Consensus 123 Pf~~~eR~~Rl~~L~~~l~~~d---v~~~ek~r~vlea~~~E~~yg~~i~~~~~~i~~dG~~~~V~~LrlGr~~l~~~t~ 199 (251)
T PF11932_consen 123 PFLLEERQERLARLRAMLDDAD---VSLAEKFRRVLEAYQIEMEYGRTIEVYQGTITLDGEERQVDFLRLGRVALYYQTL 199 (251)
T ss_pred CCChHHHHHHHHHHHHhhhccC---CCHHHHHHHHHHHHHHHHHhCCceeEEEEEEeECCeEEEEEEEeecchhheeECC
Confidence 7766655544443333332222 2356899999999999988755555544445555666666666655555555544
Q ss_pred c
Q 010099 204 S 204 (518)
Q Consensus 204 ~ 204 (518)
.
T Consensus 200 D 200 (251)
T PF11932_consen 200 D 200 (251)
T ss_pred C
Confidence 4
No 60
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=22.07 E-value=1.9e+02 Score=27.31 Aligned_cols=49 Identities=24% Similarity=0.419 Sum_probs=28.4
Q ss_pred cccccceehhhcccchhH--HHHHhHHHHHHHHhhhhhhcCCCCchHHHHHHHHHHHHH
Q 010099 54 FGSYCLWRREHREEMKDT--MVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEV 110 (518)
Q Consensus 54 ~~~~~~~~~~~~~~~~d~--~~~~~~dq~~~a~~y~~~~~~~~~~~~~~~~l~~~~~~~ 110 (518)
-|+| |..|++.-..++ =++.|.----+||+|+ + ....-+.+|..++++-
T Consensus 67 SGkY--WK~eFe~Y~~~a~~Em~KLi~yk~~aKsyA----k--kKD~Ea~~L~~KLkeE 117 (152)
T PF11500_consen 67 SGKY--WKEEFESYHEKAEKEMEKLIKYKQLAKSYA----K--KKDAEAMRLAEKLKEE 117 (152)
T ss_pred ccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H--HHHHHHHHHHHHHHHH
Confidence 4766 998886654443 2344444556788884 2 2333455666666654
No 61
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=21.29 E-value=2.6e+02 Score=23.61 Aligned_cols=76 Identities=20% Similarity=0.162 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHHHHHHHhhcCCCc-chhHHHHHHHHHHHhHHHHHHHhhHHHH
Q 010099 98 KLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVD-CSNVDKKFRQILDMTNDEANFHMKQSAF 175 (518)
Q Consensus 98 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~-~~~~~~kl~~~~~~~e~~~~~~~~~~~~ 175 (518)
.+..||.+=+.+++.++++..... ...+.+.-..++..+..+++-.-+ ...+..+.+.....+|+.++.+--++.-
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~~~~--~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P~~svg 78 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAADLA--GEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENPWQSVG 78 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHH
Confidence 355566666666666666554321 111222222233333333322211 1246778888999999999877666543
No 62
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=21.14 E-value=4.8e+02 Score=21.56 Aligned_cols=30 Identities=17% Similarity=0.116 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcCCCCceEEEEEeCCCCHHHHH
Q 010099 234 SVVINSTVLCARESKNQVFHVLTDGQNYFAMK 265 (518)
Q Consensus 234 sVvI~Sil~n~~~p~~i~FHIltd~is~~~~~ 265 (518)
.-++.|+..... ....++|++++.+.....
T Consensus 13 ~~~l~s~~~~~~--~~~~i~i~~~~~~~~~~~ 42 (156)
T cd00761 13 ERCLESLLAQTY--PNFEVIVVDDGSTDGTLE 42 (156)
T ss_pred HHHHHHHHhCCc--cceEEEEEeCCCCccHHH
Confidence 457788888765 358899999987655443
No 63
>PLN02867 Probable galacturonosyltransferase
Probab=20.67 E-value=2.1e+02 Score=32.44 Aligned_cols=77 Identities=9% Similarity=0.129 Sum_probs=58.2
Q ss_pred CchHHHHHHHHHHHHHHHHhhcccCC--CCCCccHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhHHHHHHHhhH
Q 010099 95 SQDKLTRALRQNIQEVERVLSESATD--VDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQ 172 (518)
Q Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~ 172 (518)
...++.+|+.+-..|... .+.... .+.|+++++.+.+|+....+++.+..-..+|..++...+++.-.|..+...-
T Consensus 90 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~am~~~~e~~~~~~~~~~~~~~~l 167 (535)
T PLN02867 90 TSLKLREELTRALVEAKE--QDDGGRGTKGSTESFNDLVKEMTSNRQDIKAFAFRTKAMLLKMERKVQSARQRESIYWHL 167 (535)
T ss_pred chhHHHHHHHHHHHHhhh--ccccCcchhhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788899888887321 222222 2589999999999999999999999999999999888888887777664443
Q ss_pred H
Q 010099 173 S 173 (518)
Q Consensus 173 ~ 173 (518)
+
T Consensus 168 a 168 (535)
T PLN02867 168 A 168 (535)
T ss_pred H
Confidence 3
Done!