Query 010099
Match_columns 518
No_of_seqs 321 out of 1392
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 19:52:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010099.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010099hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 100.0 5.2E-47 1.8E-51 381.5 19.5 258 219-511 4-275 (276)
2 1g9r_A Glycosyl transferase; a 100.0 4.7E-42 1.6E-46 350.0 19.5 251 221-505 1-269 (311)
3 1ll2_A Glycogenin-1; protein-s 99.9 3.5E-26 1.2E-30 235.9 17.6 227 220-507 4-256 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 99.9 3.3E-25 1.1E-29 221.7 12.6 219 227-506 13-256 (263)
5 1o7q_A N-acetyllactosaminide a 77.2 60 0.0021 32.4 15.0 117 334-460 132-261 (289)
6 3v1a_A Computational design, M 57.6 15 0.00051 27.0 4.5 38 76-114 6-43 (48)
7 3dfz_A SIRC, precorrin-2 dehyd 52.6 39 0.0013 32.2 8.0 73 94-181 148-221 (223)
8 1yzm_A FYVE-finger-containing 45.7 22 0.00074 26.5 3.8 39 75-114 6-44 (51)
9 1z0k_B FYVE-finger-containing 39.7 30 0.001 27.3 3.9 39 75-114 24-62 (69)
10 1z0j_B FYVE-finger-containing 38.0 34 0.0012 26.2 3.9 39 75-114 13-51 (59)
11 1fo8_A Alpha-1,3-mannosyl-glyc 37.1 2.2E+02 0.0074 28.8 11.1 40 323-362 80-121 (343)
12 4e61_A Protein BIM1; EB1-like 28.4 85 0.0029 26.7 5.2 36 129-164 46-101 (106)
13 3ghg_B Fibrinogen beta chain; 26.6 32 0.0011 36.5 2.8 21 38-58 54-76 (461)
14 1m1j_B Fibrinogen beta chain; 22.7 1E+02 0.0035 32.8 5.7 31 344-375 325-355 (464)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=100.00 E-value=5.2e-47 Score=381.48 Aligned_cols=258 Identities=15% Similarity=0.166 Sum_probs=186.9
Q ss_pred CceEEEEEeC-Cchh-hHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHH-HHHhccCCCceEEEEEeccccccchhhHH
Q 010099 219 SLHHYVIFST-NVLA-SSVVINSTVLCARESKNQVFHVLTDGQNYFAMKL-WFFRNTFKEATVQVLNIEQLNLESHDKAI 295 (518)
Q Consensus 219 ~~ihIv~~sD-NvLa-asVvI~Sil~n~~~p~~i~FHIltd~is~~~~~~-wf~~~~~~~a~i~v~~i~~f~~~~~~~~~ 295 (518)
-.+|||+++| ||+. ++|+|+|++.|+++ ++++|||++++++.+..+. ...... .+..|+++.+++-.|
T Consensus 4 m~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~-~~~~i~~~~~~~~~~------- 74 (276)
T 3tzt_A 4 MADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKK-FSYTLYPIRATDDLF------- 74 (276)
T ss_dssp -CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHT-TTCEEEEEECC-----------
T ss_pred eeEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHH-cCCEEEEEEeCHHHH-------
Confidence 3589999555 5765 57999999999986 6899999999999877542 112222 356788887653111
Q ss_pred HhhhccccceecccccCCCCCCcCccccccHHHHHHHhhhhhhc-cCCeEEEEecCeEEeCCchHHHcccCCCCeeeeec
Q 010099 296 LIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQ-SLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQ 374 (518)
Q Consensus 296 L~ql~~~~~~~~~f~~~~~p~~~~r~~ylS~~ty~Rl~iPellP-~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~ 374 (518)
. ..| ...++|..+|+||++|++|| +++||||||+|+||++||++||++|++|+++|||+
T Consensus 75 -~---------------~~~----~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~ 134 (276)
T 3tzt_A 75 -S---------------FAK----VTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAAS 134 (276)
T ss_dssp -----------------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEE
T ss_pred -h---------------cCc----cccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEE
Confidence 0 111 12467899999999999999 69999999999999999999999999999999999
Q ss_pred ccccchhhhhhhhccCCCCCCCCccccceEEEechHHHHhhHHHHHHHHHHHHccCCcchhhhhchhhhhhccCcEEEcC
Q 010099 375 SCSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALD 454 (518)
Q Consensus 375 d~~~~~~~~~~yl~~~~~~~~~~yfNsGVlLiNL~~WR~~nit~~~~~~l~~~~~~~~~~dQd~Ln~~li~f~~~i~~Lp 454 (518)
||... .+.++....+++...+|||||||||||++||+.++++++++++++......++|||+|| ++|.++++.||
T Consensus 135 d~~~~--~~~~~~~~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~~~~~DQd~LN---~~f~~~~~~Lp 209 (276)
T 3tzt_A 135 HTGKT--DMANNVNRIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMNLLLPDQDILN---AMYGDRIYPLD 209 (276)
T ss_dssp C----------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC--------CHHHH---HHHGGGEEEEE
T ss_pred ecccc--hHHHHHHHhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhccccccCCChhHHH---HHHhCCEEECC
Confidence 99753 12222333455555699999999999999999999999999998866566789999998 68999999999
Q ss_pred C-cccccCCCCCC--------CCC-HhhhcCCEEEEecCCCCCcccCCccchHHHHHHHHhhChhhh
Q 010099 455 G-VWALSGLGHDY--------GLN-IEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLL 511 (518)
Q Consensus 455 ~-~WN~~~lg~~~--------~~~-~~~~~~~~IIHY~G~~KPW~~~~~~~y~~~W~~Y~~~s~~fl 511 (518)
. +||+++ |+.. ... .+..++|+||||+|..|||...+.++|+++||+|++...++|
T Consensus 210 ~~~wN~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~w~~Y~~~~~~~~ 275 (276)
T 3tzt_A 210 DLIYNYDA-RNYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYMSLTKRYL 275 (276)
T ss_dssp HHHHSEET-TCHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHHHHHHHHHHHHHHT
T ss_pred chheeeec-ccchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHHHHHHHHHHHHHhh
Confidence 8 999985 3321 111 235678999999999999999999999999999999999887
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=100.00 E-value=4.7e-42 Score=350.02 Aligned_cols=251 Identities=20% Similarity=0.229 Sum_probs=192.0
Q ss_pred eEEEE-EeCCchh-hHHHHHHH-HHhcCCCCceEEEEEeCCCCHHHHHH-HHHhccCCCceEEEEEeccccccchhhHHH
Q 010099 221 HHYVI-FSTNVLA-SSVVINST-VLCARESKNQVFHVLTDGQNYFAMKL-WFFRNTFKEATVQVLNIEQLNLESHDKAIL 296 (518)
Q Consensus 221 ihIv~-~sDNvLa-asVvI~Si-l~n~~~p~~i~FHIltd~is~~~~~~-wf~~~~~~~a~i~v~~i~~f~~~~~~~~~L 296 (518)
||||+ +++||+. ++|+|+|+ +.|+. .+++|||++++++.+..+. ......+ +..|+++.++.-.+
T Consensus 1 m~I~~~~d~~Y~~~~~vli~Sl~l~~~~--~~~~f~il~~~ls~~~~~~L~~~~~~~-~~~i~~~~~~~~~~-------- 69 (311)
T 1g9r_A 1 MDIVFAADDNYAAYLCVAAKSVEAAHPD--TEIRFHVLDAGISEANRAAVAANLRGG-GGNIRFIDVNPEDF-------- 69 (311)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTCTT--SCCEEEEEESSCCHHHHHHHHHHSGGG-TTTEEEEECCGGGG--------
T ss_pred CeEEEECCHhHHHHHHHHHHHHHHHcCC--CCceEEEEECCCCHHHHHHHHHHHHHc-CCEEEEEEcCHHHH--------
Confidence 69999 5556765 56999999 88874 4799999999999877542 1112222 46677777643111
Q ss_pred hhhccccceecccccCCCCCCcCccccccHHHHHHHhhhhhhccCCeEEEEecCeEEeCCchHHHcccCCCCeeeeeccc
Q 010099 297 IHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSC 376 (518)
Q Consensus 297 ~ql~~~~~~~~~f~~~~~p~~~~r~~ylS~~ty~Rl~iPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~ 376 (518)
. ..|. ...++|..+|+||++|++||+++||||||+|+||++||++||++|++|+++|||+||
T Consensus 70 ~---------------~~~~---~~~~~s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~ 131 (311)
T 1g9r_A 70 A---------------GFPL---NIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDL 131 (311)
T ss_dssp T---------------TSCC---CCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECH
T ss_pred h---------------cCcc---ccccCCHHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEEecc
Confidence 0 1111 125788999999999999999999999999999999999999999999999999998
Q ss_pred ccchhhhhhhhccCCCCCCCCccccceEEEechHHHHhhHHHHHHHHHHHHccCCcchhhhhchhhhhhccCcEEEcCCc
Q 010099 377 SVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDGV 456 (518)
Q Consensus 377 ~~~~~~~~~yl~~~~~~~~~~yfNsGVlLiNL~~WR~~nit~~~~~~l~~~~~~~~~~dQd~Ln~~li~f~~~i~~Lp~~ 456 (518)
.... ...+....++++..+||||||||||+++||+.++++++++++++......+.|||+|| .+|.+++..||.+
T Consensus 132 ~~~~--~~~~~~~~~~~~~~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~lN---~~f~~~~~~Lp~~ 206 (311)
T 1g9r_A 132 FVER--QEGYKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILN---GLFKGGVCYANSR 206 (311)
T ss_dssp HHHT--STTHHHHTTCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSSHHHHHHH---HHHTTSEEEECGG
T ss_pred chhh--hHHHHHhcCCCCCCceEeeeeeeeeHHHHHhcchHHHHHHHHHhccCcCccCCcCHHH---HHHcCCEEEcChh
Confidence 6421 1112223455556789999999999999999999999999998876667889999998 5899999999999
Q ss_pred ccccCCCC---------CCCCC-----HhhhcCCEEEEecCCCCCcccCCccchHHHHHHHHh
Q 010099 457 WALSGLGH---------DYGLN-----IEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLN 505 (518)
Q Consensus 457 WN~~~lg~---------~~~~~-----~~~~~~~~IIHY~G~~KPW~~~~~~~y~~~W~~Y~~ 505 (518)
||++..++ ..... ....++++||||+|+.|||...+.+++.++|.++..
T Consensus 207 wN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~~~~~~~ 269 (311)
T 1g9r_A 207 FNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAG 269 (311)
T ss_dssp GSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSSSCCSTTTHHHHHHHH
T ss_pred hccCcchhhHHhhhcccccchhhhhHHhhccCCCEEEEeCCcCCCCCCCCCCccHHHHHHHHH
Confidence 99984211 00000 122358899999999999999888888777766553
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=99.94 E-value=3.5e-26 Score=235.86 Aligned_cols=227 Identities=15% Similarity=0.153 Sum_probs=152.1
Q ss_pred ceEEEEEe-CCchh-hHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEeccccccchhhHHHh
Q 010099 220 LHHYVIFS-TNVLA-SSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILI 297 (518)
Q Consensus 220 ~ihIv~~s-DNvLa-asVvI~Sil~n~~~p~~i~FHIltd~is~~~~~~wf~~~~~~~a~i~v~~i~~f~~~~~~~~~L~ 297 (518)
..+|++++ ++|+. +.|++.|+..|+++ ..++| +++++++.+..+. +...+ . .++.++.... .....+.
T Consensus 4 ~a~vt~~~d~~Yl~~a~vl~~SL~~~~s~-~~l~v-lv~~~is~~~~~~--L~~~~--~--~v~~v~~l~~--~~~~~~~ 73 (333)
T 1ll2_A 4 QAFVTLTTNDAYAKGALVLGSSLKQHRTS-RRLAV-LTTPQVSDTMRKA--LEIVF--D--EVITVDILDS--GDSAHLT 73 (333)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHH--HHHHC--S--EEEECCTTST--TSTTHHH
T ss_pred eEEEEEEeCHHHHHHHHHHHHHHHHhCCC-CCEEE-EEcCCCCHHHHHH--HHHhC--C--EEEEEeecCC--cchhhcc
Confidence 45677754 45776 45899999999864 34555 6677888765442 11111 1 3444432210 0000000
Q ss_pred hhccccceecccccCCCCCCcCccccccHHHHHHHhhhhhhccCCeEEEEecCeEEeCCchHHHcccCCCCeeeeecccc
Q 010099 298 HMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCS 377 (518)
Q Consensus 298 ql~~~~~~~~~f~~~~~p~~~~r~~ylS~~ty~Rl~iPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~ 377 (518)
. ..++ .+..+|+||++|++ ++++||||||+|+||.+||++||+++ .+|||+|.+
T Consensus 74 ~-------------------~~~~--~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~~~----~~aAv~d~~ 127 (333)
T 1ll2_A 74 L-------------------MKRP--ELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFERE----ELSAAPDPG 127 (333)
T ss_dssp H-------------------HHCG--GGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGGSC----SSEEEECSS
T ss_pred c-------------------cccc--chHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhCCC----ceeEEecCC
Confidence 0 0012 13589999999996 78999999999999999999999986 478888742
Q ss_pred cchhhhhhhhccCCCCCCCCccccceEEEechHHHHhhHHHHHHHHHHHHccCCcchhhhhchhhhhhccCcE-----EE
Q 010099 378 VSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLV-----YA 452 (518)
Q Consensus 378 ~~~~~~~~yl~~~~~~~~~~yfNsGVlLiNL~~WR~~nit~~~~~~l~~~~~~~~~~dQd~Ln~~li~f~~~i-----~~ 452 (518)
+ .+||||||||||++. ++.+++++++.+. ....+.|||+|| .+|.+.+ ..
T Consensus 128 --------------~---~~~fNsGvmlin~~~----~~~~~l~~~~~~~-~~~~~~DQ~~LN---~~f~~~~~~~~~~~ 182 (333)
T 1ll2_A 128 --------------W---PDCFNSGVFVYQPSV----ETYNQLLHVASEQ-GSFDGGDQGLLN---TFFNSWATTDIRKH 182 (333)
T ss_dssp --------------S---TTSEEEEEEEECCCH----HHHHHHHHHHHHT-CCTTSSHHHHHH---HHTTTTTTSCGGGB
T ss_pred --------------C---CcceeeeEEEEeCCH----HHHHHHHHHHHhc-CCCCCCCHHHHH---HHHHhhcccCcccc
Confidence 2 269999999998863 3456667776653 345678999999 4777643 79
Q ss_pred cCCcccccCCC-CCCC-CCHhhhcCCEEEEecCCCCCcccCCcc-----------------chHHHHHHHHhhC
Q 010099 453 LDGVWALSGLG-HDYG-LNIEAIKKAAVLHYNGNMKPWLELGIP-----------------RYKKFWKKFLNQE 507 (518)
Q Consensus 453 Lp~~WN~~~lg-~~~~-~~~~~~~~~~IIHY~G~~KPW~~~~~~-----------------~y~~~W~~Y~~~s 507 (518)
||.+||++... +... ......++++||||+|..|||...+.+ .+...||.+++..
T Consensus 183 Lp~~yN~~~~~~~~~~p~~~~~~~~~~IiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~~~~~~ 256 (333)
T 1ll2_A 183 LPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTS 256 (333)
T ss_dssp CCGGGSEETTHHHHTHHHHHHHGGGCSEEECCSSCCGGGSCEETTTTEEC--------CCHHHHHHHHHHHHHT
T ss_pred CCcHHhcccccchhccHHHHhhcCCCEEEEECCCCCCCCCCCCCCccccccccccccccHHHHHHHHHHHHHhh
Confidence 99999998431 1110 001345789999999999999876321 4678899988754
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=99.92 E-value=3.3e-25 Score=221.72 Aligned_cols=219 Identities=18% Similarity=0.193 Sum_probs=147.7
Q ss_pred eCCchh-hHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEeccccccchhhHHHhhhccccce
Q 010099 227 STNVLA-SSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVEY 305 (518)
Q Consensus 227 sDNvLa-asVvI~Sil~n~~~p~~i~FHIltd~is~~~~~~wf~~~~~~~a~i~v~~i~~f~~~~~~~~~L~ql~~~~~~ 305 (518)
+|+|+. +.|++.|+..+++. ..+++ +++++++.+..+. +...+ .+++.++.... .....+..+
T Consensus 13 d~~Yl~ga~vL~~SL~~~~s~-~~lvv-Lvt~~vs~~~~~~--L~~~~----~~vi~V~~l~~--~~~~~~~~~------ 76 (263)
T 3u2u_A 13 NDAYAKGALVLGSSLKQHRTT-RRLVV-LATPQVSDSMRKV--LETVF----DEVIMVDVLDS--GDSAHLTLM------ 76 (263)
T ss_dssp SHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHH--HHHHS----SEEEECCCCCC--CCHHHHHHT------
T ss_pred CHHHHHHHHHHHHHHHHhCCC-CCEEE-EecCCCCHHHHHH--HHHcC----CeEEEeeecCC--cchhhhhhh------
Confidence 445766 56899999998764 23433 5677888765442 11111 23444432221 000001000
Q ss_pred ecccccCCCCCCcCccccccHHHHHHHhhhhhhccCCeEEEEecCeEEeCCchHHHcccCCCCeeeeecccccchhhhhh
Q 010099 306 RVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKS 385 (518)
Q Consensus 306 ~~~f~~~~~p~~~~r~~ylS~~ty~Rl~iPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~~~~~~~~~ 385 (518)
+ ++.+ ..+|.|++++++.+ ++||||||+|+||.+||++||+++ .+|||+|.+
T Consensus 77 -------~------rp~~--~~~~~kl~~~~l~~-~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~~d~~-------- 128 (263)
T 3u2u_A 77 -------K------RPEL--GVTLTKLHCWSLTQ-YSKCVFMDADTLVLANIDDLFDRE----ELSAAPDPG-------- 128 (263)
T ss_dssp -------T------CTTG--GGGGGGGGGGGCTT-CSEEEEECTTEEECSCCGGGGGSC----SSEEEECTT--------
T ss_pred -------c------Ccch--hHHhHHHHhccccC-cceEEEEcCCEeeccCHHHHhCCC----cceEeccCC--------
Confidence 0 1222 35788999999875 999999999999999999999987 478888742
Q ss_pred hhccCCCCCCCCccccceEEEechHHHHhhHHHHHHHHHHHHccCCcchhhhhchhhhhhccC-----cEEEcCCccccc
Q 010099 386 YLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQD-----LVYALDGVWALS 460 (518)
Q Consensus 386 yl~~~~~~~~~~yfNsGVlLiNL~~WR~~nit~~~~~~l~~~~~~~~~~dQd~Ln~~li~f~~-----~i~~Lp~~WN~~ 460 (518)
+ ..||||||||||++ .++.+++++++.+. ....++|||+|| .+|.+ .++.||.+||++
T Consensus 129 ------~---~~~fNsGv~li~p~----~~~~~~l~~~~~~~-~~~~~~DQd~LN---~~f~~w~~~~~~~~Lp~~yN~~ 191 (263)
T 3u2u_A 129 ------W---PDCFNSGVFVYQPS----VETYNQLLHLASEQ-GSFDGGDQGILN---TFFSSWATTDIRKHLPFIYNLS 191 (263)
T ss_dssp ------S---TTSEEEEEEEECCC----HHHHHHHHHHHHHH-CCTTSSHHHHHH---HHTTTTTTSCGGGBCCGGGSEE
T ss_pred ------C---CccccCeEEEEccc----HHHHHHHHHHHHhc-CCCCcccHHHHH---HHhccccccCeeEeCCcccccc
Confidence 1 25999999999986 45677788887764 356789999999 57777 789999999998
Q ss_pred C-CCCCCC-CCHhhhcCCEEEEecCCCCCcccCCc-----------------cchHHHHHHHHhh
Q 010099 461 G-LGHDYG-LNIEAIKKAAVLHYNGNMKPWLELGI-----------------PRYKKFWKKFLNQ 506 (518)
Q Consensus 461 ~-lg~~~~-~~~~~~~~~~IIHY~G~~KPW~~~~~-----------------~~y~~~W~~Y~~~ 506 (518)
. ..|... ...+..++++||||+|..|||...+. ..+-..||..+..
T Consensus 192 ~~~~y~~~~~~~~~~~~~~IIHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~ww~~~~~ 256 (263)
T 3u2u_A 192 SISIYSYLPAFKVFGASAKVVHFLGRVKPWNYTYDPKTKSVKSEAHDPNMTHPEFLILWWNIFTT 256 (263)
T ss_dssp HHHHHSSHHHHHHHGGGCSEEECCSSSCGGGSEEETTTTEEECCSSCGGGSSTHHHHHHHHHHHH
T ss_pred cchhccccHHHHhhcCCeEEEEECCCCcCCCCCCCCCCCcccccCCCcchhHHHHHHHHHHHHHh
Confidence 3 222210 00234578999999999999987421 3567889987654
No 5
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=77.24 E-value=60 Score=32.36 Aligned_cols=117 Identities=9% Similarity=0.136 Sum_probs=73.3
Q ss_pred hhhhhccCCeEEEEecCeEEeCCchHHHcccCCCCeeeeecccccc-----hh-----hhhhhhccCCCCCCCCccccce
Q 010099 334 LPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVS-----LG-----QLKSYLGENSYDKNSCAWMSGL 403 (518)
Q Consensus 334 iPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~~~-----~~-----~~~~yl~~~~~~~~~~yfNsGV 403 (518)
..+++.++|=+.++|+|+++++++..= .| |..+|...--.-. +. .-..|+ .++.+..|+.+|+
T Consensus 132 ~~~~~~evDYLf~~dvd~~F~~~vG~E---~L-g~lv~~lHp~~y~~~~~~fpYERrp~S~AyI---p~~eGdfYY~Ga~ 204 (289)
T 1o7q_A 132 VAHIQHEVDFLFCMDVDQVFQDKFGVE---TL-GESVAQLQAWWYKADPNDFTYERRKESAAYI---PFGEGDFYYHAAI 204 (289)
T ss_dssp HHTHHHHCSEEEEECSSEEECSCBCGG---GC-SSEEEEECTTTTTSCGGGSCCCCCTTSTTCC---CTTCCSCCEEEEE
T ss_pred HHHHhhcCCEEEEeeCCcEeeccCCHH---HH-HHHHHccCHHHhCCCCCCCCCCCCcCceeee---cCCCCCEEEEcee
Confidence 355677899999999999999998652 22 4566665432110 00 001222 3456778999988
Q ss_pred EEEechHHHHhhHHHHHHHHHHH-Hc--cCCcchhhhhchhhhhhccCcEEEcCCccccc
Q 010099 404 NIVDLARWRELDLTKTYQRLVRE-VS--MGEESKEAVALRGSLLTFQDLVYALDGVWALS 460 (518)
Q Consensus 404 lLiNL~~WR~~nit~~~~~~l~~-~~--~~~~~~dQd~Ln~~li~f~~~i~~Lp~~WN~~ 460 (518)
+==-..+-.+ +++.|+.-+.. .. -...++|-.=||-.+ ..+...+.|++.|...
T Consensus 205 fGGt~~~vl~--l~~~c~~~i~~D~~n~I~A~wHDESHLNKYf-~~~KPtKvLSPEY~wd 261 (289)
T 1o7q_A 205 FGGTPTQVLN--ITQECFKGILKDKKNDIEAQWHDESHLNKYF-LLNKPTKILSPEYCWD 261 (289)
T ss_dssp EEECHHHHHH--HHHHHHHHHHHHHHTTCCCTTTHHHHHHHHH-HHSCCSEEECGGGSBC
T ss_pred eCCcHHHHHH--HHHHHHHHHHHHHhCCeEEEecchhhhhHHH-hhcCCCEEECHHHCCC
Confidence 7555554443 67777766544 22 224567888888633 3345578899998876
No 6
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=57.62 E-value=15 Score=27.04 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=32.3
Q ss_pred hHHHHHHHHhhhhhhcCCCCchHHHHHHHHHHHHHHHHh
Q 010099 76 LKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVL 114 (518)
Q Consensus 76 ~~dq~~~a~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (518)
|..|+++.++|. .-|+..+.-.=+.=|..|++|+++-+
T Consensus 6 L~EQ~~~I~~~I-~qAk~~rRfdEV~~L~~NL~EL~~E~ 43 (48)
T 3v1a_A 6 LAQQIKNIHSFI-HQAKAAGRMDEVRTLQENLHQLMHEY 43 (48)
T ss_dssp HHHHHHHHHHHH-HHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 789999999998 67887888878888999999997644
No 7
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=52.56 E-value=39 Score=32.20 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=54.3
Q ss_pred CCchHHHHHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhHHHHH-HHhhH
Q 010099 94 PSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEAN-FHMKQ 172 (518)
Q Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~-~~~~~ 172 (518)
.....|++.||.+|.++ ||++..+.++.|...-.+.|+...+-. .+.+-+-...++..- ...+|
T Consensus 148 G~sP~la~~iR~~ie~~------------lp~~~~~~~~~~~~~R~~vk~~~~~~~---~Rr~~~~~~~~~~~~~~~~~~ 212 (223)
T 3dfz_A 148 GASPLLTKRIKEDLSSN------------YDESYTQYTQFLYECRVLIHRLNVSKS---RKHELLTEIIDDQYRLSLVKQ 212 (223)
T ss_dssp TSCHHHHHHHHHHHHHH------------SCTHHHHHHHHHHHHHHHHHHCCSCHH---HHHHHHHHTCSHHHHHCHHHH
T ss_pred CCCcHHHHHHHHHHHHH------------ccHHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHHHHHhcchhhcChHHH
Confidence 45689999999999987 899999999999999999998877633 333333333444443 56788
Q ss_pred HHHHHHHhh
Q 010099 173 SAFLYQLAV 181 (518)
Q Consensus 173 ~~~~~~la~ 181 (518)
..|+..|..
T Consensus 213 ~~~~~~l~~ 221 (223)
T 3dfz_A 213 REFLQQIEK 221 (223)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999887753
No 8
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=45.66 E-value=22 Score=26.49 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=32.1
Q ss_pred HhHHHHHHHHhhhhhhcCCCCchHHHHHHHHHHHHHHHHh
Q 010099 75 KLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVL 114 (518)
Q Consensus 75 ~~~dq~~~a~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (518)
=|..|+++.++|. --||..+.-.=+.=|..|++|+++-+
T Consensus 6 PL~EQ~~~I~~~I-~qAk~~~r~DEV~~Le~NLrEL~~ei 44 (51)
T 1yzm_A 6 PLLQQIHNITSFI-RQAKAAGRMDEVRTLQENLRQLQDEY 44 (51)
T ss_dssp HHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-HHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 3788999999998 68888888777888888888887543
No 9
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=39.69 E-value=30 Score=27.30 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=33.1
Q ss_pred HhHHHHHHHHhhhhhhcCCCCchHHHHHHHHHHHHHHHHh
Q 010099 75 KLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVL 114 (518)
Q Consensus 75 ~~~dq~~~a~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (518)
=|.+|+++.++|. --||..+...=+.=|..|++|+++-+
T Consensus 24 PL~EQ~~~I~~yI-~qAk~~~r~DEV~tLe~NLrEL~~ei 62 (69)
T 1z0k_B 24 PLLQQIHNITSFI-RQAKAAGRMDEVRTLQENLRQLQDEY 62 (69)
T ss_dssp HHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH-HHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 5789999999998 78888888888888999999987654
No 10
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=37.98 E-value=34 Score=26.16 Aligned_cols=39 Identities=26% Similarity=0.225 Sum_probs=32.6
Q ss_pred HhHHHHHHHHhhhhhhcCCCCchHHHHHHHHHHHHHHHHh
Q 010099 75 KLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVL 114 (518)
Q Consensus 75 ~~~dq~~~a~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (518)
-|..|+++.++|. --||..+...=+.=|..|++|++.-+
T Consensus 13 pL~EQi~~I~~yI-~qAk~~~R~DEV~~Le~NLrEL~~ei 51 (59)
T 1z0j_B 13 LLLQQIDNIKAYI-FDAKQCGRLDEVEVLTENLRELKHTL 51 (59)
T ss_dssp HHHHHHHHHHHHH-HHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-HHHHHcCChHHHHHHHHHHHHHHHHH
Confidence 5789999999998 68888888877888888998887544
No 11
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=37.14 E-value=2.2e+02 Score=28.75 Aligned_cols=40 Identities=28% Similarity=0.550 Sum_probs=32.3
Q ss_pred cccHHHHHHHhhhhhhc--cCCeEEEEecCeEEeCCchHHHc
Q 010099 323 YISVFSHLHYLLPEIFQ--SLTKVVVLDDDVVVQKDLSALWD 362 (518)
Q Consensus 323 ylS~~ty~Rl~iPellP--~ldKVLYLD~DvVV~~DLseLw~ 362 (518)
|..+..+++--+-.+|. ..++||+||+|+++--|.=+.++
T Consensus 80 y~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~ 121 (343)
T 1fo8_A 80 YYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQ 121 (343)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHH
T ss_pred chhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHH
Confidence 44566777777777776 79999999999999999876654
No 12
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=28.43 E-value=85 Score=26.71 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhhcC--------------------CCcchhHHHHHHHHHHHhHH
Q 010099 129 KKIQRMEAAITKAKSV--------------------PVDCSNVDKKFRQILDMTND 164 (518)
Q Consensus 129 ~~~~~m~~~~~~~~~~--------------------~~~~~~~~~kl~~~~~~~e~ 164 (518)
.|++..|.+...+... ..+-..+.+|+.++|++|||
T Consensus 46 ~KLRdIEiLcQe~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~kIq~ILYaTee 101 (106)
T 4e61_A 46 NKLRDIEILVHTTQDLINEGVYKFNDETITGHGNGNGGALLRFVKKVESILYATAE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCC--------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhHHHHHHHHHHHHhcccc
Confidence 6788888887777553 11234567899999999987
No 13
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=26.62 E-value=32 Score=36.51 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=11.1
Q ss_pred ccCCcccccccccc--ccccccc
Q 010099 38 DSGRGGVDENENCE--LKFGSYC 58 (518)
Q Consensus 38 ~~~~~~~~~~~~~~--~~~~~~~ 58 (518)
|.++.+-+.+.-|- -+||+||
T Consensus 54 ~~~~~~pd~g~c~~~~~~fG~yC 76 (461)
T 3ghg_B 54 KVERKAPDAGGCLHADPDLGVLC 76 (461)
T ss_dssp ----CCCCCCCCBCSSTTTCBCE
T ss_pred cccccCCCCCCccccCcccCCcC
Confidence 33444444444454 7899999
No 14
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=22.70 E-value=1e+02 Score=32.76 Aligned_cols=31 Identities=6% Similarity=0.022 Sum_probs=15.8
Q ss_pred EEEEecCeEEeCCchHHHcccCCCCeeeeecc
Q 010099 344 VVVLDDDVVVQKDLSALWDINMGGKVNGAVQS 375 (518)
Q Consensus 344 VLYLD~DvVV~~DLseLw~iDL~g~~igAV~d 375 (518)
..|-.-|....++=++-|.+-++++ -|-+.|
T Consensus 325 ~~yA~Y~~F~V~~E~~~Y~L~lg~y-sG~AGD 355 (464)
T 1m1j_B 325 KVSALYGGFTIHNEGNKYQLSVSNY-KGNAGN 355 (464)
T ss_dssp EEEEEEEEEEECCGGGTTCEEEEEE-EESSCC
T ss_pred EEEEeeccEEECCcccceeeecCcc-ccCchh
Confidence 3444445555666666666655432 344433
Done!