BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010101
(518 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GPT|A Chain A, Crystal Structure Of Arabidopsis Dehydroquinate
Dehydratase- Shikimate Dehydrogenase In Complex With
Tartrate And Shikimate
Length = 523
Score = 431 bits (1107), Expect = e-121, Method: Compositional matrix adjust.
Identities = 230/512 (44%), Positives = 326/512 (63%), Gaps = 5/512 (0%)
Query: 6 KNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSM-EFSHISEVDKLIQHPTLPA 64
KN L+C + ++ ++M +A GADLVE+ +D + +F+ + ++ +I+ LP
Sbjct: 2 KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61
Query: 65 IVSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKI 124
+ +YR K E +N VLR A++L ++++++ +VAS+ + S K+
Sbjct: 62 LFTYRPKW-EGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKV 120
Query: 125 IVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPLIA 184
IVSS+ N P+ E L ++A +Q TGAD++K+ I D+A +F + + QVP I
Sbjct: 121 IVSSH-NYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIG 179
Query: 185 LAVGSRGLISQLLGPKFGGFLVYGSLGGKSV--PGLPTLVSLKQVYQLEHINPDTKIFGL 242
L +G RGL+S++L KFGG+L +G+L V PG PT+ L +Y I PDTK++G+
Sbjct: 180 LVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGI 239
Query: 243 VSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPA 302
+ PV HSK PI+HN AF+ FNG+YV +LVD++ F + YS +DFAGFS IPHKE A
Sbjct: 240 IGKPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAA 299
Query: 303 VACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHT 362
+ CCDEV PLAKSIGAVNTI+RR DGKL+GYNTDC +ISAIED LR + V S +
Sbjct: 300 LQCCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSS 359
Query: 363 SPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHE 422
SP+A K K +GA+V+I NR YERA LA+A+ G+AL L
Sbjct: 360 SPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDN 419
Query: 423 FFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATV 482
+ PE GM+LAN +++GM+PN +++P+ K+ALK Y LVFDAVYTPR TRLLREA E GA
Sbjct: 420 YHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAIT 479
Query: 483 VSGVEMFIRQALGQFRLFTGGLAPEDFMRKLV 514
VSG EMF+RQA QF +FTG AP++ +++
Sbjct: 480 VSGSEMFVRQAYEQFEIFTGLPAPKELYWQIM 511
>pdb|2O7Q|A Chain A, Crystal Structure Of The A. Thaliana
Dhq-Dehydroshikimate-Sdh- Shikimate-Nadp(H)
pdb|2O7S|A Chain A, Crystal Structure Of The A. Thaliana
Dhq-dehydroshikimate-sdh- Shikimate-nadp(h)
Length = 523
Score = 423 bits (1087), Expect = e-118, Method: Compositional matrix adjust.
Identities = 228/512 (44%), Positives = 324/512 (63%), Gaps = 5/512 (0%)
Query: 6 KNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSM-EFSHISEVDKLIQHPTLPA 64
KN L+C + ++ ++M +A GADLVE+ +D + +F+ + ++ +I+ LP
Sbjct: 2 KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61
Query: 65 IVSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKI 124
+ +YR K E +N VLR A++L ++++++ +VAS+ + S K+
Sbjct: 62 LFTYRPKW-EGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKV 120
Query: 125 IVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPLIA 184
IVSS+ N P+ E L ++A +Q TGAD++K+ I D+A +F + + QVP I
Sbjct: 121 IVSSH-NYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIG 179
Query: 185 LAVGSRGLISQLLGPKFGGFLVYGSLGGKSV--PGLPTLVSLKQVYQLEHINPDTKIFGL 242
L +G RGL+S++L KFGG+L +G+L V PG PT+ L +Y I PDTK++G+
Sbjct: 180 LVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGI 239
Query: 243 VSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPA 302
+ PV HSK PI+HN AF+ FNG+YV +LVD++ F + YS +DFAGFS IPHKE A
Sbjct: 240 IGKPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAA 299
Query: 303 VACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHT 362
+ CDEV PLAKSIGAVNTI+RR DGKL+GYNTD +ISAIED LR + V S +
Sbjct: 300 LQXCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDXIGSISAIEDGLRSSGDPSSVPSSS 359
Query: 363 SPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHE 422
SP+A K K +GA+V+I NR YERA LA+A+ G+AL L
Sbjct: 360 SPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDN 419
Query: 423 FFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATV 482
+ PE GM+LAN +++GM+PN +++P+ K+ALK Y LVFDAVYTPR TRLLREA E GA
Sbjct: 420 YHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAIT 479
Query: 483 VSGVEMFIRQALGQFRLFTGGLAPEDFMRKLV 514
VSG EMF+RQA QF +FTG AP++ +++
Sbjct: 480 VSGSEMFVRQAYEQFEIFTGLPAPKELYWQIM 511
>pdb|1NVT|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe Or
Mj1084) In Complex With Nadp+
pdb|1NVT|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe Or
Mj1084) In Complex With Nadp+
Length = 287
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 147/296 (49%), Gaps = 27/296 (9%)
Query: 233 INPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVP--MLVDDVKEFFRTYSGTDFA 290
IN TK+ GL+ +PV HS PI+HN AF+ N +YV +L +++K
Sbjct: 7 INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIV 66
Query: 291 GFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALR 350
GF+V IPHK + DE+ A+ IGAVNTI + DGK +GYNTD A A+E+ +
Sbjct: 67 GFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTI--KIEDGKAIGYNTDGIGARMALEEEIG 124
Query: 351 ERQGINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAV 410
+ N V A + ++ +II NR E+A+ALA +
Sbjct: 125 RVKDKNIVIYGAGGAARAVAFEL--------------AKDNNIIIANRTVEKAEALAKEI 170
Query: 411 S-------GEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPK-EALKAYELVFDA 462
+ GE + F L +I+ NA+ IGM PN D P+ K E L+ +V D
Sbjct: 171 AEKLNKKFGEEVKFSGLDVDLDGVDIII-NATPIGMYPNIDVEPIVKAEKLREDMVVMDL 229
Query: 463 VYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
+Y P T LL+EA +V A ++G+ M I Q F+++TG + M+ ++++
Sbjct: 230 IYNPLETVLLKEAKKVNAKTINGLGMLIYQGAVAFKIWTGVEPNIEVMKNAIIDKI 285
>pdb|2EGG|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Geobacillus Kaustophilus
pdb|2EGG|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Geobacillus Kaustophilus
Length = 297
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 127/285 (44%), Gaps = 21/285 (7%)
Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVD--DVKEFFRTYSGTDFAGFSVG 295
K++GL+ PV HS P++HN AF Y V+ V AG +V
Sbjct: 24 KVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRALGIAGVNVT 83
Query: 296 IPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGI 355
IPHK + DEV A+ IGAVNTII DG+LVGYNTD + A+E+ +
Sbjct: 84 IPHKLAVIPFLDEVDEHARRIGAVNTIINN--DGRLVGYNTDGLGYVQALEEEM------ 135
Query: 356 NGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSGEAL 415
+ + +I + R+ + NR E+A+ L G+
Sbjct: 136 -----NITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVR--EGDER 188
Query: 416 HFEYLHEFFPEKGM----ILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRL 471
Y E + I+ N +++GM P + P+ E L+ +V D +Y P T+
Sbjct: 189 RSAYFSLAEAETRLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYNPLETKW 248
Query: 472 LREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLE 516
L+EA GA V +GV M + Q F +TG + M++LV+E
Sbjct: 249 LKEAKARGARVQNGVGMLVYQGALAFEKWTGQWPDVNRMKQLVIE 293
>pdb|1WXD|A Chain A, Crystal Structure Of Shikimate 5-dehydrogenase (aroe) From
Thermus Thermophilus Hb8
pdb|1WXD|B Chain B, Crystal Structure Of Shikimate 5-dehydrogenase (aroe) From
Thermus Thermophilus Hb8
pdb|2CY0|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp
pdb|2CY0|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp
pdb|2D5C|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Shikimate
pdb|2D5C|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Shikimate
pdb|2EV9|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp(H) And
Shikimate
pdb|2EV9|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp(H) And
Shikimate
Length = 263
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 121/269 (44%), Gaps = 33/269 (12%)
Query: 240 FGLVSNPVGHSKGPILHNPAFRHTRFNGIY----VPM--LVDDVKEFFRTYSGTDFAGFS 293
F ++ +PV HS P +H A G Y P+ L +KE R + G +
Sbjct: 4 FAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRRAFRGVNLT--- 60
Query: 294 VGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQ 353
+P KE A+A D V P A+ IGAVNT+++ ++G+L G+NTD + A++
Sbjct: 61 --LPLKEAALAHLDWVSPEAQRIGAVNTVLQ--VEGRLFGFNTDAPGFLEALKAG----- 111
Query: 354 GINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSGE 413
GI P+ G ++ G V ++NR +RA ALA+
Sbjct: 112 GI--------PLKGPALVLGAGGAGRAVAFALREA-GLEVWVWNRTPQRALALAEEFGLR 162
Query: 414 ALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLR 473
A+ E E +L NA+ +G+E + SP+P E D VY P TR LR
Sbjct: 163 AVPLEKARE-----ARLLVNATRVGLE-DPSASPLPAELFPEEGAAVDLVYRPLWTRFLR 216
Query: 474 EAAEVGATVVSGVEMFIRQALGQFRLFTG 502
EA G V +G+ M Q FRL+TG
Sbjct: 217 EAKAKGLKVQTGLPMLAWQGALAFRLWTG 245
>pdb|3DON|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From
Staphylococcus Epidermidis
pdb|3DOO|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From
Staphylococcus Epidermidis Complexed With Shikimate
Length = 277
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 136/291 (46%), Gaps = 40/291 (13%)
Query: 240 FGLVSNPVGHSKGPILHNPAFRHTRFNGIY--VPMLVDDVKEFFRTYSGTDFAGFSVGIP 297
F ++ NP+ HS P++H+ F+ Y + + V+ ++ + S GF+V IP
Sbjct: 3 FAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIP 62
Query: 298 HKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTD-------CESAISAIEDALR 350
HKE + D+++ AKS+GAVNT++ + DGK +GYNTD + IEDA
Sbjct: 63 HKERIIPYLDDINEQAKSVGAVNTVLVK--DGKWIGYNTDGIGYVNGLKQIYEGIEDAYI 120
Query: 351 ERQGINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAV 410
G G + + KI + + NR R + +
Sbjct: 121 LILGAGGASKGIANELYKIVR-------------------PTLTVANRTMSRFNNWSLNI 161
Query: 411 SGEAL-HFE-YLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRN 468
+ L H E +L EF I+ N + GM N+D S + L ++ LV D VY P
Sbjct: 162 NKINLSHAESHLDEF-----DIIINTTPAGMNGNTD-SVISLNRLASHTLVSDIVYNPYK 215
Query: 469 TRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPE-DFMRKLVLEQF 518
T +L EA + G + +G++MF+ Q F+++T L P+ M+ +V+++
Sbjct: 216 TPILIEAEQRGNPIYNGLDMFVHQGAESFKIWT-NLEPDIKAMKNIVIQKL 265
>pdb|2HK7|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK7|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|E Chain E, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|F Chain F, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|G Chain G, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|H Chain H, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
Length = 269
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 131/276 (47%), Gaps = 23/276 (8%)
Query: 233 INPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVD--DVKEFFRTYSGTDFA 290
IN T+++G++ PV HS P+ N R+ N +Y+ ++ ++K+ F +
Sbjct: 2 INAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVK 61
Query: 291 GFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALR 350
G +V +P KE + D V AK IGAVNT+ + +GK GYNTD + +++ +
Sbjct: 62 GINVTVPFKEEIIPLLDYVEDTAKEIGAVNTV--KFENGKAYGYNTDWIGFLKSLKSLIP 119
Query: 351 ERQGINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAV 410
E V + + G GA+V ++NR E+A LA
Sbjct: 120 E------VKEKSILVLG-------AGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKF 166
Query: 411 SGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTR 470
E ++ E +K ++ N +++G++ + D + +K +V D +Y + T+
Sbjct: 167 PLEVVNSP---EEVIDKVQVIVNTTSVGLK-DEDPEIFNYDLIKKDHVVVDIIY--KETK 220
Query: 471 LLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAP 506
LL++A E GA ++ G+ M + Q + F+++ G P
Sbjct: 221 LLKKAKEKGAKLLDGLPMLLWQGIEAFKIWNGCEVP 256
>pdb|2HK9|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
Length = 275
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 131/276 (47%), Gaps = 23/276 (8%)
Query: 233 INPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVD--DVKEFFRTYSGTDFA 290
IN T+++G++ PV HS P+ N R+ N +Y+ ++ ++K+ F +
Sbjct: 8 INAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVK 67
Query: 291 GFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALR 350
G +V +P KE + D V AK IGAVNT+ + +GK GYNTD + +++ +
Sbjct: 68 GINVTVPFKEEIIPLLDYVEDTAKEIGAVNTV--KFENGKAYGYNTDWIGFLKSLKSLIP 125
Query: 351 ERQGINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAV 410
E V + + G GA+V ++NR E+A LA
Sbjct: 126 E------VKEKSILVLG-------AGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKF 172
Query: 411 SGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTR 470
E ++ E +K ++ N +++G++ + D + +K +V D +Y + T+
Sbjct: 173 PLEVVNSP---EEVIDKVQVIVNTTSVGLK-DEDPEIFNYDLIKKDHVVVDIIY--KETK 226
Query: 471 LLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAP 506
LL++A E GA ++ G+ M + Q + F+++ G P
Sbjct: 227 LLKKAKEKGAKLLDGLPMLLWQGIEAFKIWNGCEVP 262
>pdb|3TOZ|A Chain A, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|B Chain B, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|C Chain C, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|D Chain D, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|E Chain E, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|F Chain F, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|G Chain G, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|H Chain H, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TNL|A Chain A, 1.45 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Shikimate And Nad.
pdb|3TNL|B Chain B, 1.45 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Shikimate And Nad.
pdb|3TNL|C Chain C, 1.45 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Shikimate And Nad.
pdb|3TNL|D Chain D, 1.45 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Shikimate And Nad
Length = 315
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 137/300 (45%), Gaps = 30/300 (10%)
Query: 231 EHINPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDD--VKEFFRTYSGTD 288
E I T++ GL++ P+ HS P +HN AF + +Y+ V D +K+ + + +
Sbjct: 31 ERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMN 90
Query: 289 FAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDA 348
G++V +P+K D++ P A+ +GAVNT++ DG L G+ TD + A+++A
Sbjct: 91 LRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVND--DGVLTGHITDGTGYMRALKEA 148
Query: 349 LRERQGINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVI-IFNRN---YERAK 404
+ I GK G + I IFNR Y A+
Sbjct: 149 GHD-------------IIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAE 195
Query: 405 ALADAVS------GEALHFEYLHEFFPE--KGMILANASAIGMEPNSDQSPVPK-EALKA 455
+ ++ + E + E + +I NA+ +GM+P ++ +P + L+
Sbjct: 196 KTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRP 255
Query: 456 YELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVL 515
+V D VY P TRLL A E G ++G+ M + Q F ++T P D++++++
Sbjct: 256 ELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEILF 315
>pdb|3T4E|A Chain A, 1.95 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium In Complex With Nad
pdb|3T4E|B Chain B, 1.95 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium In Complex With Nad
Length = 312
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 129/293 (44%), Gaps = 32/293 (10%)
Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTD---FAGFSV 294
++ GL++ P+ HS P + N A Y+ VD+ F G G V
Sbjct: 32 ELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDNTT-FASAIEGLKALKMRGTGV 90
Query: 295 GIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQG 354
+P+K+ A DE+ P AK +GA+NTI+ DG L GYNTD I AI+++ G
Sbjct: 91 SMPNKQLACEYVDELTPAAKLVGAINTIVND--DGYLRGYNTDGTGHIRAIKES-----G 143
Query: 355 INGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVI-IFNRN---YERAKALADAV 410
+ + GK G + I +FNR +E+A A A V
Sbjct: 144 FD--------MRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRV 195
Query: 411 SGEA------LHFEYLHEFFP--EKGMILANASAIGMEPNSDQSPVPKEALKAYE-LVFD 461
+ H F IL N + +GM+P ++S + +L E LV +
Sbjct: 196 NENTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLRPELLVTE 255
Query: 462 AVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLV 514
VY P T+LL++A + G + G M + Q QF L+TG P D++++++
Sbjct: 256 CVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFELWTGKAFPLDYVKQVM 308
>pdb|1NPY|A Chain A, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
pdb|1NPY|B Chain B, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
pdb|1NPY|C Chain C, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
pdb|1NPY|D Chain D, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
Length = 271
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 118/273 (43%), Gaps = 27/273 (9%)
Query: 233 INPDTKI-FGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAG 291
IN DT++ L P G HN + N IY D++ + G
Sbjct: 2 INKDTQLCMSLSGRPSNF--GTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRG 59
Query: 292 FSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRE 351
+V +P KE + DE+HP A++I +VNTI+ +G L YNTD + + IE
Sbjct: 60 CAVSMPFKETCMPFLDEIHPSAQAIESVNTIVND--NGFLRAYNTDYIAIVKLIEKYHLN 117
Query: 352 RQGINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRG-ARVIIFNRNYERAKALADAV 410
+ V H S K K+ G ++ I+ RN + + LA A+
Sbjct: 118 KNA--KVIVHGSGGMAK------------AVVAAFKNSGFEKLKIYARNVKTGQYLA-AL 162
Query: 411 SGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPV--PKEALKAYELVFDAVYTPRN 468
G A Y++ ++ IL N ++IGM+ ++ + PK + + FD V P
Sbjct: 163 YGYA----YINSLENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVE 218
Query: 469 TRLLREAAEVGATVVSGVEMFIRQALGQFRLFT 501
T +R A G +SG + + QA+ QF L+T
Sbjct: 219 TPFIRYAQARGKQTISGAAVIVLQAVEQFELYT 251
>pdb|1VI2|A Chain A, Crystal Structure Of Shikimate-5-Dehydrogenase With Nad
pdb|1VI2|B Chain B, Crystal Structure Of Shikimate-5-Dehydrogenase With Nad
Length = 300
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 123/292 (42%), Gaps = 32/292 (10%)
Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTD---FAGFSV 294
++ GL + P+ HS P N A Y VD+ F G G V
Sbjct: 10 ELIGLXAYPIRHSLSPEXQNKALEKAGLPFTYXAFEVDN-DSFPGAIEGLKALKXRGTGV 68
Query: 295 GIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQG 354
P+K+ A DE+ P AK +GA+NTI+ DG L GYNTD I AI+++ G
Sbjct: 69 SXPNKQLACEYVDELTPAAKLVGAINTIVND--DGYLRGYNTDGTGHIRAIKES-----G 121
Query: 355 INGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVI-IFNRN---YERAKALADAV 410
+ I GK G + I +FNR +++A A A V
Sbjct: 122 FD--------IKGKTXVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRV 173
Query: 411 SGEALHFEYLHEFFPEKGM--------ILANASAIGMEPNSDQSPVPK-EALKAYELVFD 461
+ + + ++ IL N + +G +P ++S V L LV +
Sbjct: 174 NENTDCVVTVTDLADQQAFAEALASADILTNGTKVGXKPLENESLVNDISLLHPGLLVTE 233
Query: 462 AVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKL 513
VY P T+LL++A + G + G + Q QF L+TG P ++++++
Sbjct: 234 CVYNPHXTKLLQQAQQAGCKTIDGYGXLLWQGAEQFTLWTGKDFPLEYVKQV 285
>pdb|1NPD|A Chain A, X-Ray Structure Of Shikimate Dehydrogenase Complexed With
Nad+ From E.Coli (Ydib) Northeast Structural Genomics
Research Consortium (Nesg) Target Er24
pdb|1NPD|B Chain B, X-Ray Structure Of Shikimate Dehydrogenase Complexed With
Nad+ From E.Coli (Ydib) Northeast Structural Genomics
Research Consortium (Nesg) Target Er24
pdb|1O9B|A Chain A, QuinateSHIKIMATE DEHYDROGENASE YDIB COMPLEXED WITH NADH
pdb|1O9B|B Chain B, QuinateSHIKIMATE DEHYDROGENASE YDIB COMPLEXED WITH NADH
Length = 288
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 123/292 (42%), Gaps = 32/292 (10%)
Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTD---FAGFSV 294
++ GL + P+ HS P N A Y VD+ F G G V
Sbjct: 8 ELIGLXAYPIRHSLSPEXQNKALEKAGLPFTYXAFEVDN-DSFPGAIEGLKALKXRGTGV 66
Query: 295 GIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQG 354
P+K+ A DE+ P AK +GA+NTI+ DG L GYNTD I AI+++ G
Sbjct: 67 SXPNKQLACEYVDELTPAAKLVGAINTIVND--DGYLRGYNTDGTGHIRAIKES-----G 119
Query: 355 INGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVI-IFNRN---YERAKALADAV 410
+ I GK G + I +FNR +++A A A V
Sbjct: 120 FD--------IKGKTXVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRV 171
Query: 411 SGEALHFEYLHEFFPEKGM--------ILANASAIGMEPNSDQSPVPK-EALKAYELVFD 461
+ + + ++ IL N + +G +P ++S V L LV +
Sbjct: 172 NENTDCVVTVTDLADQQAFAEALASADILTNGTKVGXKPLENESLVNDISLLHPGLLVTE 231
Query: 462 AVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKL 513
VY P T+LL++A + G + G + Q QF L+TG P ++++++
Sbjct: 232 CVYNPHXTKLLQQAQQAGCKTIDGYGXLLWQGAEQFTLWTGKDFPLEYVKQV 283
>pdb|3PHG|A Chain A, Crystal Structure Of The Shikimate 5-Dehydrogenase (Aroe)
From Helicobacter Pylori
pdb|3PHG|B Chain B, Crystal Structure Of The Shikimate 5-Dehydrogenase (Aroe)
From Helicobacter Pylori
pdb|3PHH|A Chain A, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With Shikimate
pdb|3PHI|A Chain A, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With Shikimate And Nadph
pdb|3PHI|B Chain B, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With Shikimate And Nadph
pdb|3PHJ|A Chain A, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With 3-Dehydroshikimate
pdb|3PHJ|B Chain B, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With 3-Dehydroshikimate
Length = 269
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 117/279 (41%), Gaps = 41/279 (14%)
Query: 238 KIFGLVSNPVGHSKGPILHNPAF----RHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFS 293
K FG+ NP+ HSK P++HN F + RF G Y P+L+ + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 294 VGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQ 353
V +P KE A CD++ +A GAVNT++ + +LVGYNTD +++ +
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQKNYQNA 121
Query: 354 GINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSGE 413
I G +A ++ K +G +V + NR+ R + +
Sbjct: 122 LILGAGGSAKALACEL-----------------KKQGLQVSVLNRS-SRGLDFFQRLGCD 163
Query: 414 ALHFEYLHEFFPEKGM--ILANASAIGMEPNSDQSPVPKEALKAY----ELVFDAVYTPR 467
P K ++ NA++ + ++ P+ KE LK Y +L +D Y
Sbjct: 164 CF-------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYGFL 213
Query: 468 NTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAP 506
T L A E+ G +M I QA F F+ P
Sbjct: 214 -TPFLSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIP 251
>pdb|4FOO|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237k
Mutant From Helicobacter Pylori
pdb|4FOO|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237k
Mutant From Helicobacter Pylori
Length = 271
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 123/293 (41%), Gaps = 45/293 (15%)
Query: 238 KIFGLVSNPVGHSKGPILHNPAF----RHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFS 293
K FG+ NP+ HSK P++HN F + RF G Y P+L+ + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 294 VGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQ 353
V +P KE A CD++ +A GAVNT++ + +LVGYNTD +++ +
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQKNYQNA 121
Query: 354 GINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSGE 413
I G +A ++ K +G +V + NR+ R + +
Sbjct: 122 LILGAGGSAKALACEL-----------------KKQGLQVSVLNRS-SRGLDFFQRLGCD 163
Query: 414 ALHFEYLHEFFPEKGM--ILANASAIGMEPNSDQSPVPKEALKAY----ELVFDAVYTPR 467
P K ++ NA++ + ++ P+ KE LK Y +L +D Y
Sbjct: 164 CF-------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYGFL 213
Query: 468 NTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPE----DFMRKLVLE 516
T L A E+ G +M I +A F F+ P + MR + LE
Sbjct: 214 -TPFLSLAKELKTPFQDGKDMLIYKAALSFEKFSASQIPYSKAFEVMRSVFLE 265
>pdb|4FPX|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237n
Mutant From Helicobacter Pylori
pdb|4FPX|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237n
Mutant From Helicobacter Pylori
Length = 271
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 122/293 (41%), Gaps = 45/293 (15%)
Query: 238 KIFGLVSNPVGHSKGPILHNPAF----RHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFS 293
K FG+ NP+ HSK P++HN F + RF G Y P+L+ + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 294 VGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQ 353
V +P KE A CD++ +A GAVNT++ + +LVGYNTD +++ +
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQKNYQNA 121
Query: 354 GINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSGE 413
I G +A ++ K +G +V + NR+ R + +
Sbjct: 122 LILGAGGSAKALACEL-----------------KKQGLQVSVLNRS-SRGLDFFQRLGCD 163
Query: 414 ALHFEYLHEFFPEKGM--ILANASAIGMEPNSDQSPVPKEALKAY----ELVFDAVYTPR 467
P K ++ NA++ + ++ P+ KE LK Y +L +D Y
Sbjct: 164 CF-------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYGFL 213
Query: 468 NTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPE----DFMRKLVLE 516
T L A E+ G +M I A F F+ P + MR + LE
Sbjct: 214 -TPFLSLAKELKTPFQDGKDMLIYNAALSFEKFSASQIPYSKAFEVMRSVFLE 265
>pdb|4FR5|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210s
Mutant From Helicobacter Pylori In Complex With
Shikimate
pdb|4FR5|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210s
Mutant From Helicobacter Pylori In Complex With
Shikimate
Length = 271
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 124/293 (42%), Gaps = 45/293 (15%)
Query: 238 KIFGLVSNPVGHSKGPILHNPAF----RHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFS 293
K FG+ NP+ HSK P++HN F + RF G Y P+L+ + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 294 VGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQ 353
V +P KE A CD++ +A GAVNT++ + +LVGYNTD +++ +
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQKNYQNA 121
Query: 354 GINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSGE 413
I G +A ++ K +G +V + NR+ R + +
Sbjct: 122 LILGAGGSAKALACEL-----------------KKQGLQVSVLNRS-SRGLDFFQRLGCD 163
Query: 414 ALHFEYLHEFFPEKGM--ILANASAIGMEPNSDQSPVPKEALKAY----ELVFDAVYTPR 467
P K ++ NA++ + ++ P+ KE LK Y +L +D + +
Sbjct: 164 CF-------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYD-LASGF 212
Query: 468 NTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPE----DFMRKLVLE 516
T L A E+ G +M I QA F F+ P + MR + LE
Sbjct: 213 LTPFLSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRSVFLE 265
>pdb|4FOS|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237a
Mutant From Helicobacter Pylori In Complex With
Shikimate
Length = 271
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 122/293 (41%), Gaps = 45/293 (15%)
Query: 238 KIFGLVSNPVGHSKGPILHNPAF----RHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFS 293
K FG+ NP+ HSK P++HN F + RF G Y P+L+ + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 294 VGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQ 353
V +P KE A CD++ +A GAVNT++ + +LVGYNTD +++ +
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQKNYQNA 121
Query: 354 GINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSGE 413
I G +A ++ K +G +V + NR+ R + +
Sbjct: 122 LILGAGGSAKALACEL-----------------KKQGLQVSVLNRS-SRGLDFFQRLGCD 163
Query: 414 ALHFEYLHEFFPEKGM--ILANASAIGMEPNSDQSPVPKEALKAY----ELVFDAVYTPR 467
P K ++ NA++ + ++ P+ KE LK Y +L +D Y
Sbjct: 164 CF-------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYGFL 213
Query: 468 NTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPE----DFMRKLVLE 516
T L A E+ G +M I A F F+ P + MR + LE
Sbjct: 214 -TPFLSLAKELKTPFQDGKDMLIYAAALSFEKFSASQIPYSKAFEVMRSVFLE 265
>pdb|4FQ8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210a
Mutant From Helicobacter Pylori In Complex With
Shikimate
pdb|4FQ8|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210a
Mutant From Helicobacter Pylori In Complex With
Shikimate
Length = 271
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 123/296 (41%), Gaps = 51/296 (17%)
Query: 238 KIFGLVSNPVGHSKGPILHNPAF----RHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFS 293
K FG+ NP+ HSK P++HN F + RF G Y P+L+ + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 294 VGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQ 353
V +P KE A CD++ +A GAVNT++ + +LVGYNTD +++ +
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQKNYQNA 121
Query: 354 GINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSGE 413
I G +A ++ K +G +V + NR+ R + +
Sbjct: 122 LILGAGGSAKALACEL-----------------KKQGLQVSVLNRS-SRGLDFFQRLGCD 163
Query: 414 ALHFEYLHEFFPEKGM--ILANASAIGMEPNSDQSPVPKEALKAY----ELVFD---AVY 464
P K ++ NA++ + ++ P+ KE LK Y +L +D
Sbjct: 164 CF-------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAAGFL 213
Query: 465 TPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPE----DFMRKLVLE 516
TP L A E+ G +M I QA F F+ P + MR + LE
Sbjct: 214 TP----FLSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRSVFLE 265
>pdb|3FBT|A Chain A, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
pdb|3FBT|B Chain B, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
pdb|3FBT|C Chain C, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
pdb|3FBT|D Chain D, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
Length = 282
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 107/264 (40%), Gaps = 29/264 (10%)
Query: 236 DTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIY----VPMLVDDVKEFFRTYSGTDFAG 291
+T I+GL+ +GHS +H F GIY VP + +KE T+ G
Sbjct: 4 NTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPK--EKLKESVDTFKIIKCGG 61
Query: 292 FSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRE 351
+V IP+K + E+ A+ IGAVNT ++ +G + G+NTD
Sbjct: 62 LNVTIPYKVEVMKELYEISEKARKIGAVNT-LKFSREG-ISGFNTD-------------- 105
Query: 352 RQGINGVASHTS-PIAGKIXXXXXXXXXXXXXXXXXKSRGAR-VIIFNRNYERAKALADA 409
G + S I I K A+ + + RN E+
Sbjct: 106 YIGFGKMLSKFRVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEK----TSE 161
Query: 410 VSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNT 469
+ GE Y E KG ++ N + GM P +SPV KE + + D +Y P T
Sbjct: 162 IYGEFKVISY-DELSNLKGDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYNPVET 220
Query: 470 RLLREAAEVGATVVSGVEMFIRQA 493
L+ A E G V+G+ M + QA
Sbjct: 221 LFLKYARESGVKAVNGLYMLVSQA 244
>pdb|4FSH|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (aroe)
Clinical Variant V2356 From Helicobacter Pylori In
Complex With Shikimate
pdb|4FSH|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (aroe)
Clinical Variant V2356 From Helicobacter Pylori In
Complex With Shikimate
Length = 271
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 121/293 (41%), Gaps = 45/293 (15%)
Query: 238 KIFGLVSNPVGHSKGPILHNPAF----RHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFS 293
K FG+ NP+ HSK P++HN F + F G Y P+L+ + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKKLGFLGHYRPILLPLESHIKNEFLHLGLSGAN 63
Query: 294 VGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQ 353
V +P KE A CD++ +A ++NT++ + +LVGYNTD +++ +
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECASINTLVLE--NDELVGYNTDALGFYLSLKHQNYQNA 121
Query: 354 GINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSGE 413
I G +A + K +G +V + NR+ R + +
Sbjct: 122 LILGSGGSAKALACGL-----------------KKQGLKVSVLNRS-PRGLDFFQRLGCD 163
Query: 414 ALHFEYLHEFFPEKGM--ILANASAIGMEPNSDQSPVPKEALKAY----ELVFDAVYTPR 467
P K ++ NA++ + +++ P+ KE LK Y +L +D Y
Sbjct: 164 CF-------MEPPKSAFDLIINATSASL---NNELPLNKEVLKGYFKEAKLAYDLAYGFL 213
Query: 468 NTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPE----DFMRKLVLE 516
T L A E+ G +M I QA F F+ P + MR + LE
Sbjct: 214 -TPFLALAKELKIPFQDGKDMLIYQASLSFEKFSASQIPYSKAFEVMRSVFLE 265
>pdb|3PGJ|A Chain A, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3PGJ|B Chain B, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3PGJ|C Chain C, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3PGJ|D Chain D, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3SEF|A Chain A, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
pdb|3SEF|B Chain B, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
pdb|3SEF|C Chain C, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
pdb|3SEF|D Chain D, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
Length = 302
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 118/273 (43%), Gaps = 32/273 (11%)
Query: 240 FGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPML--VDDVKEFFRTYSGTDFAGFSVGIP 297
+ + NP+ HSK P +H R T+ + IY VD E + + G +V +P
Sbjct: 32 YAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNVTVP 91
Query: 298 HKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGING 357
KE A D + A+ GAVNT +++ DG+++G NTD E ++D L ++ + G
Sbjct: 92 FKEEAYRFADRLTERARLAGAVNT-LKKLDDGEILGDNTDGE---GLVQDLLAQQVLLKG 147
Query: 358 VASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSG----E 413
I + A + + NR + +A+ LA+ V+ +
Sbjct: 148 AT---------ILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVK 198
Query: 414 ALHFEYLHEFFPEKGMILANASAIGME---PNSDQSPVPKEALKAYELVFDAVYTPRNTR 470
A FE L + + ++ N+++ ++ P D PV + + +D +Y T
Sbjct: 199 AQAFEQLKQSYD----VIINSTSASLDGELPAID--PV---IFSSRSVCYDMMYGKGYTV 249
Query: 471 LLREAAEVG-ATVVSGVEMFIRQALGQFRLFTG 502
+ A + G A + G+ M + QA F L+ G
Sbjct: 250 FNQWARQHGCAQAIDGLGMLVGQAAESFMLWRG 282
>pdb|3O8Q|A Chain A, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae
Length = 281
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 118/273 (43%), Gaps = 32/273 (11%)
Query: 240 FGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPML--VDDVKEFFRTYSGTDFAGFSVGIP 297
+ + NP+ HSK P +H R T+ + IY VD E + + G +V +P
Sbjct: 11 YAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNVTVP 70
Query: 298 HKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGING 357
KE A D + A+ GAVNT +++ DG+++G NTD E ++D L ++ + G
Sbjct: 71 FKEEAYRFADRLTERARLAGAVNT-LKKLDDGEILGDNTDGE---GLVQDLLAQQVLLKG 126
Query: 358 VASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSG----E 413
I + A + + NR + +A+ LA+ V+ +
Sbjct: 127 AT---------ILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVK 177
Query: 414 ALHFEYLHEFFPEKGMILANASAIGME---PNSDQSPVPKEALKAYELVFDAVYTPRNTR 470
A FE L + + ++ N+++ ++ P D PV + + +D +Y T
Sbjct: 178 AQAFEQLKQSYD----VIINSTSASLDGELPAID--PV---IFSSRSVCYDMMYGKGYTV 228
Query: 471 LLREAAEVG-ATVVSGVEMFIRQALGQFRLFTG 502
+ A + G A + G+ M + QA F L+ G
Sbjct: 229 FNQWARQHGCAQAIDGLGMLVGQAAESFMLWRG 261
>pdb|3O8Q|B Chain B, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae
Length = 275
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 118/273 (43%), Gaps = 32/273 (11%)
Query: 240 FGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPML--VDDVKEFFRTYSGTDFAGFSVGIP 297
+ + NP+ HSK P +H R T+ + IY VD E + + G +V +P
Sbjct: 5 YAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNVTVP 64
Query: 298 HKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGING 357
KE A D + A+ GAVNT +++ DG+++G NTD E ++D L ++ + G
Sbjct: 65 FKEEAYRFADRLTERARLAGAVNT-LKKLDDGEILGDNTDGE---GLVQDLLAQQVLLKG 120
Query: 358 VASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSG----E 413
I + A + + NR + +A+ LA+ V+ +
Sbjct: 121 AT---------ILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVK 171
Query: 414 ALHFEYLHEFFPEKGMILANASAIGME---PNSDQSPVPKEALKAYELVFDAVYTPRNTR 470
A FE L + + ++ N+++ ++ P D PV + + +D +Y T
Sbjct: 172 AQAFEQLKQSYD----VIINSTSASLDGELPAID--PV---IFSSRSVCYDMMYGKGYTV 222
Query: 471 LLREAAEVG-ATVVSGVEMFIRQALGQFRLFTG 502
+ A + G A + G+ M + QA F L+ G
Sbjct: 223 FNQWARQHGCAQAIDGLGMLVGQAAESFMLWRG 255
>pdb|2NLO|A Chain A, Crystal Structure Of The Quinate Dehydrogenase From
Corynebacterium Glutamicum
Length = 302
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 122/299 (40%), Gaps = 35/299 (11%)
Query: 225 KQVYQLEHINPDTKIFGLVSNPVGHSKGPILHNP-------AFRHTRFNGIYVPMLVDDV 277
+Q+Y +N D+ + GL+ + S+ P +H A + R + + D+
Sbjct: 12 EQLYFQGAMN-DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDL 70
Query: 278 KEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPID--GKLVGYN 335
K F G ++ P+K+ + DEV A +GAVNT++ ID G G+N
Sbjct: 71 KTLLDAALYLGFNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVV---IDATGHTTGHN 127
Query: 336 TDCESAISAIEDALRERQGINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVII 395
TD +E+ L + + V + + ++ +
Sbjct: 128 TDVSGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQ------------KLQV 175
Query: 396 FNRNYERAKALAD----AVSGEAL---HFEYLHEFFPEKGMILANASAIGMEPNSDQSPV 448
+ + RA+ALAD AV EA+ + + ++ NA+ +GM P +
Sbjct: 176 ADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVV-NATPMGM-PAHPGTAF 233
Query: 449 PKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPE 507
L V D VY P T LL+ A +G + G M I QA+ FRLFT GL P+
Sbjct: 234 DVSCLTKDHWVGDVVYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFT-GLEPD 291
>pdb|3JYO|A Chain A, Quinate Dehydrogenase From Corynebacterium Glutamicum In
Complex With Nad
pdb|3JYP|A Chain A, Quinate Dehydrogenase From Corynebacterium Glutamicum In
Complex With Quinate And Nadh
pdb|3JYQ|A Chain A, Quinate Dehydrogenase From Corynebacterium Glutamicum In
Complex With Shikimate And Nadh
Length = 283
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 116/288 (40%), Gaps = 34/288 (11%)
Query: 236 DTKIFGLVSNPVGHSKGPILHNP-------AFRHTRFNGIYVPMLVDDVKEFFRTYSGTD 288
D+ + GL+ + S+ P +H A + R + + D+K
Sbjct: 3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLG 62
Query: 289 FAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPID--GKLVGYNTDCESAISAIE 346
F G ++ P+K+ + DEV A +GAVNT++ ID G G+NTD +E
Sbjct: 63 FNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVV---IDATGHTTGHNTDVSGFGRGME 119
Query: 347 DALRERQGINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKAL 406
+ L + + V + + ++ + + + RA+AL
Sbjct: 120 EGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQ------------KLQVADLDTSRAQAL 167
Query: 407 AD----AVSGEAL---HFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELV 459
AD AV EA+ + + ++ NA+ +GM P + L V
Sbjct: 168 ADVINNAVGREAVVGVDARGIEDVIAAADGVV-NATPMGM-PAHPGTAFDVSCLTKDHWV 225
Query: 460 FDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPE 507
D VY P T LL+ A +G + G M I QA+ FRLFT GL P+
Sbjct: 226 GDVVYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFT-GLEPD 272
>pdb|1NYT|A Chain A, Shikimate Dehydrogenase Aroe Complexed With Nadp+
pdb|1NYT|B Chain B, Shikimate Dehydrogenase Aroe Complexed With Nadp+
pdb|1NYT|C Chain C, Shikimate Dehydrogenase Aroe Complexed With Nadp+
pdb|1NYT|D Chain D, Shikimate Dehydrogenase Aroe Complexed With Nadp+
Length = 271
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 111/276 (40%), Gaps = 30/276 (10%)
Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPML--VDDVKEFFRTYSGTDFAGFSVG 295
+ + + NP+ HSK P +H + Y +L ++D + G +V
Sbjct: 2 ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVT 61
Query: 296 IPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGI 355
+P KE A A DE+ A GAVNT++R DG+L+G NTD +S +E R G+
Sbjct: 62 VPFKEEAFARADELTERAALAGAVNTLMRLE-DGRLLGDNTDGVGLLSDLERLSFIRPGL 120
Query: 356 NGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAV----S 411
+ + + S V I NR RA+ LA S
Sbjct: 121 RILLIGAGGASRGVLLPLL-------------SLDCAVTITNRTVSRAEELAKLFAHTGS 167
Query: 412 GEALHFEYL--HEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNT 469
+AL + L HEF ++ NA++ G+ + D +P + +D Y T
Sbjct: 168 IQALSMDELEGHEF-----DLIINATSSGI--SGDIPAIPSSLIHPGIYCYDMFYQKGKT 220
Query: 470 RLLREAAEVGATV-VSGVEMFIRQALGQFRLFTGGL 504
L + G+ G+ M + QA F L+ G L
Sbjct: 221 PFLAWCEQRGSKRNADGLGMLVAQAAHAFLLWHGVL 256
>pdb|3TUM|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of A Shikimate
Dehydrogenase Family Protein From Pseudomonas Putida
Kt2440 In Complex With Nad+
pdb|3TUM|B Chain B, 2.15 Angstrom Resolution Crystal Structure Of A Shikimate
Dehydrogenase Family Protein From Pseudomonas Putida
Kt2440 In Complex With Nad+
Length = 269
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 111/283 (39%), Gaps = 34/283 (12%)
Query: 233 INPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPM-----LVDDVKEFFRTYSGT 287
I T++ +V +P+ K P N F H N +P+ +D + R +
Sbjct: 2 IRGSTELVAIVGSPIAQVKSPQNFNTWFNHNNCNLAMLPIDLHEAALDSFADTLRGWQ-- 59
Query: 288 DFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIED 347
+ G V +P+K+ D + A ++G++N +IRR DG+L+G N D + A
Sbjct: 60 NLRGCVVTVPYKQALANRVDGLSERAAALGSIN-VIRRERDGRLLGDNVDGAGFLGAAHK 118
Query: 348 ALRERQGINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALA 407
E G + + I A + + + + R A+
Sbjct: 119 HGFEPAGKRALVIGCGGVGSAIAYALAEAGI------------ASITLCDPSTARMGAVC 166
Query: 408 DAVSGE------ALHFEYLHEFFPEKGMILANASAIGMEPNSD--QSPVPKEALKAYELV 459
+ + + F L +F ++ANAS +GM ++ S L+ LV
Sbjct: 167 ELLGNGFPGLTVSTQFSGLEDF-----DLVANASPVGMGTRAELPLSAALLATLQPDTLV 221
Query: 460 FDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTG 502
D V +P T LL A +VG + +G EM Q LG F G
Sbjct: 222 ADVVTSPEITPLLNRARQVGCRIQTGPEMAFAQ-LGHLGAFMG 263
>pdb|3U62|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From
Thermotoga Maritima
Length = 253
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 118/280 (42%), Gaps = 41/280 (14%)
Query: 240 FGLVSNPVGHSKGPILHNPAFRHTRFNGIY----VPMLVDDVKEFFRTYSGTDFAGFSVG 295
F ++ PV HS P L+N F+ N Y +P D E R D GF+
Sbjct: 3 FCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDT-EIRRILEEYD--GFNAT 59
Query: 296 IPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGI 355
IPHKE + + A+ I AVN + R GK GYNTD +
Sbjct: 60 IPHKERVMRYVEPSED-AQRIKAVNCVFR----GK--GYNTDW----------------V 96
Query: 356 NGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGAR-VIIFNRNYERAKALADAVSGEA 414
V S + G + + + NR ERAKAL V +
Sbjct: 97 GVVKSLEGVEVKEPVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPV--KI 154
Query: 415 LHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLRE 474
+ L E +K L N +++GM+ ++ PV ++LK LV+D +Y +T L+ +
Sbjct: 155 FSLDQLDEVV-KKAKSLFNTTSVGMK--GEELPVSDDSLKNLSLVYDVIYF--DTPLVVK 209
Query: 475 AAEVGAT-VVSGVEMFIRQALGQFRLFTGGLAPEDFMRKL 513
A ++G ++ G MF QA+ +++ G+ E+ +++
Sbjct: 210 ARKLGVKHIIKGNLMFYYQAMENLKIW--GIYDEEVFKEV 247
>pdb|1QFE|A Chain A, The Structure Of Type I 3-Dehydroquinate Dehydratase From
Salmonella Typhi
pdb|1QFE|B Chain B, The Structure Of Type I 3-Dehydroquinate Dehydratase From
Salmonella Typhi
pdb|1L9W|A Chain A, Crystal Structure Of 3-Dehydroquinase From Salmonella
Typhi Complexed With Reaction Product
pdb|1L9W|B Chain B, Crystal Structure Of 3-Dehydroquinase From Salmonella
Typhi Complexed With Reaction Product
pdb|1L9W|C Chain C, Crystal Structure Of 3-Dehydroquinase From Salmonella
Typhi Complexed With Reaction Product
pdb|1L9W|D Chain D, Crystal Structure Of 3-Dehydroquinase From Salmonella
Typhi Complexed With Reaction Product
pdb|1GQN|A Chain A, Native 3-Dehydroquinase From Salmonella Typhi
Length = 252
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 86/181 (47%), Gaps = 11/181 (6%)
Query: 60 PTLPAIVSYRLKSSRKSSDEACKNTCLQVLRRALDLD---VEFVEMDYEVASDPLMSEII 116
P +P + ++R S+++ ++ L RA +D V+ ++++ + + +
Sbjct: 73 PDIPLLFTFR--SAKEGGEQTITTQHYLTLNRAA-IDSGLVDMIDLELFTGDADVKATVD 129
Query: 117 YSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEI----AVDSITDLAPVF 172
Y+ ++ +V S + P+ E++ + MQA GAD+ K+ + D +T L
Sbjct: 130 YAHAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQALGADIPKIAVMPQSKHDVLTLLTATL 189
Query: 173 EMLTH-CQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLE 231
EM H P+I +++ G+IS+L G FG +G++ S PG + L+ V +
Sbjct: 190 EMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQASAPGQIAVNDLRSVLMIL 249
Query: 232 H 232
H
Sbjct: 250 H 250
>pdb|3O1N|A Chain A, 1.03 Angstrom Crystal Structure Of Q236a Mutant Type I
Dehydroquinate Dehydratase (Arod) From Salmonella
Typhimurium
pdb|3O1N|B Chain B, 1.03 Angstrom Crystal Structure Of Q236a Mutant Type I
Dehydroquinate Dehydratase (Arod) From Salmonella
Typhimurium
Length = 276
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 101/210 (48%), Gaps = 15/210 (7%)
Query: 36 DLVELCIDSMEFSHISEVDKLIQHP-TLPAIVS-----YRLKSSRKSSDEACKN-TCLQV 88
D++E +D F++++ + +++ + I++ + +S+++ ++A + +
Sbjct: 67 DILEWRVD--HFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDL 124
Query: 89 LRRALDLD-VEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIAC 147
R A+D V+ ++++ D + + + Y+ + ++ S + P E++ +
Sbjct: 125 NRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRK 184
Query: 148 MQATGADVMKLEI----AVDSITDLAPVFEMLT-HCQVPLIALAVGSRGLISQLLGPKFG 202
MQ GAD+ K+ + D +T L EM + P+I +++ G+IS+L G FG
Sbjct: 185 MQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFG 244
Query: 203 GFLVYGSLGGKSVPGLPTLVSLKQVYQLEH 232
+G++ S PG ++ L+ V + H
Sbjct: 245 SAATFGAVKKASAPGAISVADLRTVLTILH 274
>pdb|3M7W|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3M7W|B Chain B, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3M7W|C Chain C, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3M7W|D Chain D, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3M7W|E Chain E, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3M7W|F Chain F, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3OEX|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium With Close Loop
Conformation.
pdb|3OEX|B Chain B, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium With Close Loop
Conformation.
pdb|3OEX|C Chain C, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium With Close Loop
Conformation.
pdb|3OEX|D Chain D, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium With Close Loop
Conformation.
pdb|4GFS|A Chain A, 1.8 Angstrom Crystal Structure Of The 3-Dehydroquinate
Dehydratase (Arod) From Salmonella Typhimurium Lt2 With
Nickel Bound At Active Site
pdb|4GFS|B Chain B, 1.8 Angstrom Crystal Structure Of The 3-Dehydroquinate
Dehydratase (Arod) From Salmonella Typhimurium Lt2 With
Nickel Bound At Active Site
pdb|4GUI|A Chain A, 1.78 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (Arod) In Complex With
Quinate
pdb|4GUI|B Chain B, 1.78 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (Arod) In Complex With
Quinate
pdb|4GUJ|A Chain A, 1.50 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (Arod) In Complex With
Shikimate
pdb|4GUJ|B Chain B, 1.50 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (Arod) In Complex With
Shikimate
Length = 255
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 101/210 (48%), Gaps = 15/210 (7%)
Query: 36 DLVELCIDSMEFSHISEVDKLIQHP-TLPAIVS-----YRLKSSRKSSDEACKN-TCLQV 88
D++E +D F++++ + +++ + I++ + +S+++ ++A + +
Sbjct: 46 DILEWRVD--HFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDL 103
Query: 89 LRRALDLD-VEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIAC 147
R A+D V+ ++++ D + + + Y+ + ++ S + P E++ +
Sbjct: 104 NRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRK 163
Query: 148 MQATGADVMKLEI----AVDSITDLAPVFEML-THCQVPLIALAVGSRGLISQLLGPKFG 202
MQ GAD+ K+ + D +T L EM + P+I +++ G+IS+L G FG
Sbjct: 164 MQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFG 223
Query: 203 GFLVYGSLGGKSVPGLPTLVSLKQVYQLEH 232
+G++ S PG ++ L+ V + H
Sbjct: 224 SAATFGAVKKASAPGQISVADLRTVLTILH 253
>pdb|3L2I|A Chain A, 1.85 Angstrom Crystal Structure Of The 3-Dehydroquinate
Dehydratase (Arod) From Salmonella Typhimurium Lt2.
pdb|3L2I|B Chain B, 1.85 Angstrom Crystal Structure Of The 3-Dehydroquinate
Dehydratase (Arod) From Salmonella Typhimurium Lt2.
pdb|3LB0|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 With Citrate
Bound To The Active Site.
pdb|3LB0|B Chain B, Crystal Structure Of The 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 With Citrate
Bound To The Active Site.
pdb|3S42|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Enterica Typhimurium Lt2 With
Malonate And Boric Acid At The Active Site
pdb|3S42|B Chain B, Crystal Structure Of The 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Enterica Typhimurium Lt2 With
Malonate And Boric Acid At The Active Site
Length = 276
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 101/210 (48%), Gaps = 15/210 (7%)
Query: 36 DLVELCIDSMEFSHISEVDKLIQHP-TLPAIVS-----YRLKSSRKSSDEACKN-TCLQV 88
D++E +D F++++ + +++ + I++ + +S+++ ++A + +
Sbjct: 67 DILEWRVD--HFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDL 124
Query: 89 LRRALDLD-VEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIAC 147
R A+D V+ ++++ D + + + Y+ + ++ S + P E++ +
Sbjct: 125 NRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRK 184
Query: 148 MQATGADVMKLEI----AVDSITDLAPVFEMLT-HCQVPLIALAVGSRGLISQLLGPKFG 202
MQ GAD+ K+ + D +T L EM + P+I +++ G+IS+L G FG
Sbjct: 185 MQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFG 244
Query: 203 GFLVYGSLGGKSVPGLPTLVSLKQVYQLEH 232
+G++ S PG ++ L+ V + H
Sbjct: 245 SAATFGAVKKASAPGQISVADLRTVLTILH 274
>pdb|4GUF|A Chain A, 1.5 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant
pdb|4GUF|B Chain B, 1.5 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant
pdb|4GUG|A Chain A, 1.62 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant In
Complex With Dehydroshikimate (crystal Form #1)
pdb|4GUG|B Chain B, 1.62 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant In
Complex With Dehydroshikimate (crystal Form #1)
pdb|4GUH|A Chain A, 1.95 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant In
Complex With Dehydroshikimate (crystal Form #2)
pdb|4GUH|B Chain B, 1.95 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant In
Complex With Dehydroshikimate (crystal Form #2)
Length = 276
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 100/210 (47%), Gaps = 15/210 (7%)
Query: 36 DLVELCIDSMEFSHISEVDKLIQHP-TLPAIVS-----YRLKSSRKSSDEACKN-TCLQV 88
D++E +D F++++ + +++ + I++ + +S++ ++A + +
Sbjct: 67 DILEWRVD--HFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKAGGEQALTTGQYIDL 124
Query: 89 LRRALDLD-VEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIAC 147
R A+D V+ ++++ D + + + Y+ + ++ S + P E++ +
Sbjct: 125 NRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRK 184
Query: 148 MQATGADVMKLEI----AVDSITDLAPVFEMLT-HCQVPLIALAVGSRGLISQLLGPKFG 202
MQ GAD+ K+ + D +T L EM + P+I +++ G+IS+L G FG
Sbjct: 185 MQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFG 244
Query: 203 GFLVYGSLGGKSVPGLPTLVSLKQVYQLEH 232
+G++ S PG ++ L+ V + H
Sbjct: 245 SAATFGAVKKASAPGQISVADLRTVLTILH 274
>pdb|3NNT|A Chain A, Crystal Structure Of K170m Mutant Of Type I
3-Dehydroquinate Dehydratase (Arod) From Salmonella
Typhimurium Lt2 In Non-Covalent Complex With
Dehydroquinate.
pdb|3NNT|B Chain B, Crystal Structure Of K170m Mutant Of Type I
3-Dehydroquinate Dehydratase (Arod) From Salmonella
Typhimurium Lt2 In Non-Covalent Complex With
Dehydroquinate.
pdb|4IUO|A Chain A, 1.8 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) K170m Mutant In
Complex With Quinate
pdb|4IUO|B Chain B, 1.8 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) K170m Mutant In
Complex With Quinate
Length = 276
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 100/210 (47%), Gaps = 15/210 (7%)
Query: 36 DLVELCIDSMEFSHISEVDKLIQHP-TLPAIVS-----YRLKSSRKSSDEACKN-TCLQV 88
D++E +D F++++ + +++ + I++ + +S+++ ++A + +
Sbjct: 67 DILEWRVD--HFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDL 124
Query: 89 LRRALDLD-VEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIAC 147
R A+D V+ ++++ D + + + Y+ + ++ S + P E++ +
Sbjct: 125 NRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRK 184
Query: 148 MQATGADVMKLEI----AVDSITDLAPVFEMLT-HCQVPLIALAVGSRGLISQLLGPKFG 202
MQ GAD+ + + D +T L EM + P+I +++ G+IS+L G FG
Sbjct: 185 MQELGADIPMIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFG 244
Query: 203 GFLVYGSLGGKSVPGLPTLVSLKQVYQLEH 232
+G++ S PG ++ L+ V + H
Sbjct: 245 SAATFGAVKKASAPGQISVADLRTVLTILH 274
>pdb|3JS3|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|3JS3|B Chain B, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|3JS3|C Chain C, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|3JS3|D Chain D, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|4H3D|A Chain A, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid.
pdb|4H3D|B Chain B, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid.
pdb|4H3D|C Chain C, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid.
pdb|4H3D|D Chain D, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid
Length = 258
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 8/131 (6%)
Query: 109 DPLMSEIIY--SRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSIT 166
D ++ E++ + K+I+S++ + P E++ + MQ GAD+ K+ + +
Sbjct: 125 DEVIDEVVNFAHKKEVKVIISNH-DFNKTPKKEEIVSRLCRMQELGADLPKIAVMPQNEK 183
Query: 167 DLAPVFEMLT-----HCQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTL 221
D+ + E + P+I +++ G+IS+L G FG L +G+ S PG +
Sbjct: 184 DVLVLLEATNEMFKIYADRPIITMSMSGMGVISRLCGEIFGSALTFGAAKSVSAPGQISF 243
Query: 222 VSLKQVYQLEH 232
L V L H
Sbjct: 244 KELNSVLNLLH 254
>pdb|1P74|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) From
Haemophilus Influenzae
pdb|1P74|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) From
Haemophilus Influenzae
pdb|1P77|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (aroe) From
Haemophilus Influenzae
Length = 272
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 110/281 (39%), Gaps = 45/281 (16%)
Query: 239 IFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPML--VDDVKEFFRTYSGTDFAGFSVGI 296
++ + NP+ SK P++ N T Y+ L +D ++ + G ++
Sbjct: 3 LYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNITS 62
Query: 297 PHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIE--DALRERQG 354
P KE A DE AK A NT +++ DGKL NTD ++ ++ + LR Q
Sbjct: 63 PFKERAYQLADEYSQRAKLAEACNT-LKKLDDGKLYADNTDGIGLVTDLQRLNWLRPNQH 121
Query: 355 --INGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALAD---- 408
I G T + + +++ NR + + K LA+
Sbjct: 122 VLILGAGGATKGVLLPLLQAQQ-----------------NIVLANRTFSKTKELAERFQP 164
Query: 409 -----AVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAV 463
AVS +++ + ++ NA++ G+ + + V E LK +D
Sbjct: 165 YGNIQAVSMDSIPLQTYD--------LVINATSAGLSGGT--ASVDAEILKLGSAFYDMQ 214
Query: 464 YTP-RNTRLLREAAEVGATVVS-GVEMFIRQALGQFRLFTG 502
Y +T + +G T VS G M + QA F L+ G
Sbjct: 215 YAKGTDTPFIALCKSLGLTNVSDGFGMLVAQAAHSFHLWRG 255
>pdb|1SFL|A Chain A, 1.9a Crystal Structure Of Staphylococcus Aureus Type I 3-
Dehydroquinase, Apo Form
pdb|1SFL|B Chain B, 1.9a Crystal Structure Of Staphylococcus Aureus Type I 3-
Dehydroquinase, Apo Form
Length = 238
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 108/235 (45%), Gaps = 26/235 (11%)
Query: 13 TQLECETTEEMQASIEQA-------KVEGADLVELCIDSMEFSHISEVDKLI-----QHP 60
T +E T Q SIE+ +++ D++EL ID E + +V ++I
Sbjct: 2 THVEVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQD 61
Query: 61 TLPAIVSYRLKSSRKSSDEACKNTCLQVLRRALDLD-VEFVEMDYEVASDPLMSEIIYS- 118
+ +V+YR K + + ++ L ++ +++ ++ ++++++ D + I +
Sbjct: 62 SFKLLVTYRTKL-QGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITH 120
Query: 119 --RSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLT 176
+ N ++I+S + N P ++L + MQ + +KL + + D+ + + ++
Sbjct: 121 LQQYNKEVIISHH-NFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMS 179
Query: 177 ------HCQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLK 225
C+V + +++ GLIS+ FGG L YG +G PG + LK
Sbjct: 180 TFSDTMDCKV--VGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLK 232
>pdb|1SFJ|A Chain A, 2.4a Crystal Structure Of Staphylococcus Aureus Type I 3-
Dehydroquinase, With 3-Dehydroquinate Bound
pdb|1SFJ|B Chain B, 2.4a Crystal Structure Of Staphylococcus Aureus Type I 3-
Dehydroquinase, With 3-Dehydroquinate Bound
Length = 238
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 97/209 (46%), Gaps = 17/209 (8%)
Query: 31 KVEGADLVELCIDSMEFSHISEVDKLI-----QHPTLPAIVSYRLKSSRKSSDEACKNTC 85
+++ D++EL ID E + +V ++I + +V+YR K + + ++
Sbjct: 27 RIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKL-QGGYGQFTNDSY 85
Query: 86 LQVLRRALDLD-VEFVEMDYEVASDPLMSE--IIYSRSNTKIIVSSYLNGGGKPTTEKLG 142
L ++ +++ ++ ++++++ D + I + + K ++ S+ N P ++L
Sbjct: 86 LNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQ 145
Query: 143 DVIACMQATGADVMKLEIAVDSITDLAPVFEMLT------HCQVPLIALAVGSRGLISQL 196
+ MQ + +KL + + D+ + + ++ C+V + +++ GLIS+
Sbjct: 146 FIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKV--VGISMSKLGLISRT 203
Query: 197 LGPKFGGFLVYGSLGGKSVPGLPTLVSLK 225
FGG L YG +G PG + LK
Sbjct: 204 AQGVFGGALTYGCIGEPQAPGQIDVTDLK 232
>pdb|3PWZ|A Chain A, Crystal Structure Of An Ael1 Enzyme From Pseudomonas
Putida
Length = 272
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 104/271 (38%), Gaps = 28/271 (10%)
Query: 240 FGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEF------FRTYSGTDFAGFS 293
+ ++ P+ H+K P++H F + + + +F FR+ G G +
Sbjct: 5 YAVIGRPINHTKSPLIHG-LFAQASNQQLEYGAIEGSLDDFEAQVLQFRSEGGK---GMN 60
Query: 294 VGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQ 353
+ P K A D A+ A N + + DG++V N D + IE+ L E
Sbjct: 61 ITAPFKLRAFELADRRSERAQLARAANAL--KFEDGRIVAENFDGIGLLRDIEENLGE-- 116
Query: 354 GINGVASHTSPIAG-KIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSG 412
P+ ++ ++ + ++I NR+ +A AL + +
Sbjct: 117 ----------PLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH 166
Query: 413 EALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLL 472
L + I+ NA++ + +D P+P + L L ++ Y T L
Sbjct: 167 SRLRISRYEALEGQSFDIVVNATSASL--TADLPPLPADVLGEAALAYELAYGKGLTPFL 224
Query: 473 REAAEVG-ATVVSGVEMFIRQALGQFRLFTG 502
R A E G A + GV M + QA F + G
Sbjct: 225 RLAREQGQARLADGVGMLVEQAAEAFAWWRG 255
>pdb|2EGZ|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2EGZ|C Chain C, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2YSW|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2YSW|B Chain B, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2YSW|C Chain C, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
Length = 219
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 100/214 (46%), Gaps = 18/214 (8%)
Query: 26 SIEQAKVEGADLVELCIDSME---FSHISEVDKLIQHPTLPAIVSYRLKSSRKSSDEACK 82
++++AK +GAD+VEL +D +++ E + + L I++ R S + K
Sbjct: 15 NLKKAKEKGADIVELRVDQFSDTSLNYVKEKLEEVHSQGLKTILTIR---SPEEGGREVK 71
Query: 83 NTCLQVLRRALDLDVEFVEMDYEVASDPLMSEI--IYSRSNTKIIVSSYLNGGGKPTTEK 140
N + L L ++ D E++S L+ ++ I + K+I+S Y N P
Sbjct: 72 NR--EELFEELSPLSDYT--DIELSSRGLLVKLYNITKEAGKKLIIS-YHNFELTPPNWI 126
Query: 141 LGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPLIALAVGSRGLISQLLGPK 200
+ +V+ G + K+ + +S D+A + + + I +++G G IS+L G
Sbjct: 127 IREVLREGYRYGG-IPKIAVKANSYEDVARLLCISRQVEGEKILISMGDYGKISRLAGYV 185
Query: 201 FGGFLVYGSLGGKSVPG---LPTLVSL-KQVYQL 230
FG + Y SL PG L +V L K+ Y+L
Sbjct: 186 FGSVITYCSLEKAFAPGQIPLEEMVELRKKFYRL 219
>pdb|2YR1|A Chain A, Crystal Structure Of 3-Dehydroquinate Dehydratase From
Geobacillus Kaustophilus Hta426
pdb|2YR1|B Chain B, Crystal Structure Of 3-Dehydroquinate Dehydratase From
Geobacillus Kaustophilus Hta426
Length = 257
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 15/140 (10%)
Query: 102 MDYEVASDPLMSEI--IYSRSNTKIIVSS-YLNGGGKPTTEKLGDVIACMQATGADVMKL 158
+DYE+A ++++ + + ++VS Y +G P E L + + GAD+ K+
Sbjct: 118 VDYELAYGERIADVRRMTEECSVWLVVSRHYFDG--TPRKETLLADMRQAERYGADIAKV 175
Query: 159 EIAVDSITD----LAPVFEMLTHCQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKS 214
+ S D L E +PLI +A+G G I++L G FG + + S
Sbjct: 176 AVMPKSPEDVLVLLQATEEARRELAIPLITMAMGGLGAITRLAGWLFGSAVTFAVGNQSS 235
Query: 215 VPG------LPTLVSLKQVY 228
PG + T++S+ Q Y
Sbjct: 236 APGQIPIDDVRTVLSILQTY 255
>pdb|2OX1|A Chain A, Archaeal Dehydroquinase
pdb|2OX1|B Chain B, Archaeal Dehydroquinase
pdb|2OX1|C Chain C, Archaeal Dehydroquinase
pdb|2OX1|D Chain D, Archaeal Dehydroquinase
Length = 196
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 90/200 (45%), Gaps = 30/200 (15%)
Query: 33 EGADLVELCIDSMEFSHISEVDKLIQHPTLPAIVSYRLKSSRKSSD----EACKNTCLQV 88
E AD+VEL ID +FS + VDK ++ + R+ SD E + ++
Sbjct: 17 EKADVVELRIDLFDFSG-ARVDK------------EKILTCRRVSDGGKFEGDERERIEK 63
Query: 89 LRRALD-LDVEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIAC 147
++RA D L+ ++V+++ ++ N +II SY N P +L ++
Sbjct: 64 MKRAFDSLNPDYVDLESDLPDSAF-------DFNCRII-ESYHNFIRTPDYSELKGIV-- 113
Query: 148 MQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPLIALAVGSRGLISQLLGPKFGGFLVY 207
+ D++K+ S D+ + +LT+ ++A +G R +++L G +Y
Sbjct: 114 -EGRRGDLVKIATMGKSKRDVETIVRILTNYD-DVVAFLMGERFSFTRVLAAYLGSPFIY 171
Query: 208 GSLGGKSVPGLPTLVSLKQV 227
+G PG +L +++
Sbjct: 172 CYVGSPKAPGQISLDDAREI 191
>pdb|1GPJ|A Chain A, Glutamyl-Trna Reductase From Methanopyrus Kandleri
Length = 404
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 388 SRGAR-VIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASA 436
RG R V++ NR YERA LA + GEA+ F+ L + ++++ +A
Sbjct: 188 DRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA 237
>pdb|2EYU|A Chain A, The Crystal Structure Of The C-Terminal Domain Of Aquifex
Aeolicus Pilt
pdb|2EYU|B Chain B, The Crystal Structure Of The C-Terminal Domain Of Aquifex
Aeolicus Pilt
Length = 261
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 161 AVDSITDLAPVFEMLTHCQVPLIALAVGSRGLISQLLGPKFGG--FLVYGSL-GGKSVPG 217
A+D+I + +F + QV ++ L+ +G+ISQ L PK GG L YG L ++
Sbjct: 135 AIDTIHRIVDIFPLNQQEQVRIV-LSFILQGIISQRLLPKIGGGRVLAYGLLIPNTAIRN 193
Query: 218 LPTLVSLKQVYQL 230
L L+QVY L
Sbjct: 194 LIRENKLQQVYSL 206
>pdb|2Q13|A Chain A, Crystal Structure Of Bar-Ph Domain Of Appl1
Length = 385
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 84 TCLQVLRRALDLDVEFVEM---DYEVASDPL 111
T +Q +RR +D D+E ++ D EVASDPL
Sbjct: 231 TSVQNVRREMDSDIETMQQTIEDLEVASDPL 261
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 161 AVDSITDLAPVFEMLTHCQVPLIALAVGSRGLISQLLGPKFGG--FLVYGSL-GGKSVPG 217
A+D+I + +F + QV ++ L+ +G+ISQ L PK GG L Y L ++
Sbjct: 246 AIDTIHRIVDIFPLNQQEQVRIV-LSFILQGIISQRLLPKIGGGRVLAYELLIPNTAIRN 304
Query: 218 LPTLVSLKQVYQL 230
L L+QVY L
Sbjct: 305 LIRENKLQQVYSL 317
>pdb|2EWW|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Atp
Length = 372
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 161 AVDSITDLAPVFEMLTHCQVPLIALAVGSRGLISQLLGPKFGG--FLVYGSL-GGKSVPG 217
A+D+I + +F + QV ++ L+ +G+ISQ L PK GG L Y L ++
Sbjct: 246 AIDTIHRIVDIFPLNQQEQVRIV-LSFILQGIISQRLLPKIGGGRVLAYELLIPNTAIRN 304
Query: 218 LPTLVSLKQVYQL 230
L L+QVY L
Sbjct: 305 LIRENKLQQVYSL 317
>pdb|2GSZ|A Chain A, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|B Chain B, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|C Chain C, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|D Chain D, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|E Chain E, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|F Chain F, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
Length = 363
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 161 AVDSITDLAPVFEMLTHCQVPLIALAVGSRGLISQLLGPKFGG--FLVYGSL-GGKSVPG 217
A+D+I + +F + QV ++ L+ +G+ISQ L PK GG L Y L ++
Sbjct: 235 AIDTIHRIVDIFPLNQQEQVRIV-LSFILQGIISQRLLPKIGGGRVLAYELLIPNTAIRN 293
Query: 218 LPTLVSLKQVYQL 230
L L+QVY L
Sbjct: 294 LIRENKLQQVYSL 306
>pdb|1YI8|B Chain B, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|A Chain A, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|C Chain C, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YIA|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YID|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp
Length = 351
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 236 DTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFR 282
D FG PVG + P+L RFN +Y P+L + + R
Sbjct: 157 DIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSR 203
>pdb|2A4M|A Chain A, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|B Chain B, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|C Chain C, Structure Of Trprs Ii Bound To Atp
Length = 331
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 236 DTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFR 282
D FG PVG + P+L RFN +Y P+L + + R
Sbjct: 137 DIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSR 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,212,252
Number of Sequences: 62578
Number of extensions: 589414
Number of successful extensions: 1470
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1367
Number of HSP's gapped (non-prelim): 63
length of query: 518
length of database: 14,973,337
effective HSP length: 103
effective length of query: 415
effective length of database: 8,527,803
effective search space: 3539038245
effective search space used: 3539038245
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)