RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 010101
(518 letters)
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 543 bits (1400), Expect = 0.0
Identities = 242/518 (46%), Positives = 343/518 (66%), Gaps = 9/518 (1%)
Query: 6 KNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-FSHISEVDKLIQHPTLPA 64
KN L+C + ++ ++M +A GADLVE+ +D ++ F+ + ++ +I+ LP
Sbjct: 2 KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61
Query: 65 IVSYRLKS--SRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNT 122
+ +YR K + DE VLR A++L ++++++ +VAS+ + S
Sbjct: 62 LFTYRPKWEGGQYEGDEN---ERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKF 118
Query: 123 KIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPL 182
K+IVSS+ N P+ E L ++A +Q TGAD++K+ I D+A +F + + QVP
Sbjct: 119 KVIVSSH-NYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPT 177
Query: 183 IALAVGSRGLISQLLGPKFGGFLVYGSL--GGKSVPGLPTLVSLKQVYQLEHINPDTKIF 240
I L +G RGL+S++L KFGG+L +G+L S PG PT+ L +Y I PDTK++
Sbjct: 178 IGLVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVY 237
Query: 241 GLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKE 300
G++ PV HSK PI+HN AF+ FNG+YV +LVD++ F + YS +DFAGFS IPHKE
Sbjct: 238 GIIGKPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKE 297
Query: 301 PAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVAS 360
A+ CCDEV PLAKSIGAVNTI+RR DGKL+GYNTDC +ISAIED LR + V S
Sbjct: 298 AALQCCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPS 357
Query: 361 HTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYL 420
+SP+A K V++GAGGAG+ALA+GAK +GA+V+I NR YERA LA+A+ G+AL L
Sbjct: 358 SSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDL 417
Query: 421 HEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGA 480
+ PE GM+LAN +++GM+PN +++P+ K+ALK Y LVFDAVYTPR TRLLREA E GA
Sbjct: 418 DNYHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGA 477
Query: 481 TVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
VSG EMF+RQA QF +FTG AP++ +++ +
Sbjct: 478 ITVSGSEMFVRQAYEQFEIFTGLPAPKELYWQIMSKYG 515
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: NAD;
1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A*
1vi2_A*
Length = 312
Score = 317 bits (814), Expect = e-105
Identities = 86/316 (27%), Positives = 137/316 (43%), Gaps = 30/316 (9%)
Query: 214 SVPGLPTLVSLKQVYQLEHINPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPML 273
S +L + ++ GL++ P+ HS P + N A Y+
Sbjct: 8 SSGVDLGTENLYFQSNAMDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFE 67
Query: 274 V--DDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKL 331
V G V +P+K+ A DE+ P AK +GA+NTI+ DG L
Sbjct: 68 VDNTTFASAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVND--DGYL 125
Query: 332 VGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA 391
GYNTD I AI+++ + + GK VL+GAGGA A+ A G
Sbjct: 126 RGYNTDGTGHIRAIKESGFD-------------MRGKTMVLLGAGGAATAIGAQAAIEGI 172
Query: 392 -RVIIFNRN---YERAKALADAVSGEALHFEYLHEFFP--------EKGMILANASAIGM 439
+ +FNR +E+A A A V+ + + IL N + +GM
Sbjct: 173 KEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNGTKVGM 232
Query: 440 EPNSDQSPV-PKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFR 498
+P ++S + L+ LV + VY P T+LL++A + G + G M + Q QF
Sbjct: 233 KPLENESLIGDVSLLRPELLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFE 292
Query: 499 LFTGGLAPEDFMRKLV 514
L+TG P D++++++
Sbjct: 293 LWTGKAFPLDYVKQVM 308
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein
structure initiative; HET: NAP; 2.35A
{Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Length = 287
Score = 314 bits (806), Expect = e-104
Identities = 105/295 (35%), Positives = 152/295 (51%), Gaps = 27/295 (9%)
Query: 233 INPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFA 290
IN TK+ GL+ +PV HS PI+HN AF+ N +YV V +++K
Sbjct: 7 INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIV 66
Query: 291 GFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALR 350
GF+V IPHK + DE+ A+ IGAVNTI DGK +GYNTD A A+E+ +
Sbjct: 67 GFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTIKIE--DGKAIGYNTDGIGARMALEEEIG 124
Query: 351 ERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAV 410
+ K V+ GAGGA RA+AF + +II NR E+A+ALA +
Sbjct: 125 R-------------VKDKNIVIYGAGGAARAVAFELA-KDNNIIIANRTVEKAEALAKEI 170
Query: 411 S-------GEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSP-VPKEALKAYELVFDA 462
+ GE + F L + I+ NA+ IGM PN D P V E L+ +V D
Sbjct: 171 AEKLNKKFGEEVKFSGLDVD-LDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDL 229
Query: 463 VYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ 517
+Y P T LL+EA +V A ++G+ M I Q F+++TG + M+ ++++
Sbjct: 230 IYNPLETVLLKEAKKVNAKTINGLGMLIYQGAVAFKIWTGVEPNIEVMKNAIIDK 284
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid; HET: NAD SKM; 1.45A
{Listeria monocytogenes} PDB: 3toz_A*
Length = 315
Score = 310 bits (797), Expect = e-103
Identities = 84/325 (25%), Positives = 149/325 (45%), Gaps = 31/325 (9%)
Query: 207 YGSLGGKSVPGLPTLVSLKQVYQ-LEHINPDTKIFGLVSNPVGHSKGPILHNPAFRHTRF 265
+ S G S + E I T++ GL++ P+ HS P +HN AF
Sbjct: 6 HHSSGVDLGTENLYFQSNAMTNKITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGL 65
Query: 266 NGIYVPMLV--DDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTII 323
+ +Y+ V ++K+ + + + G++V +P+K D++ P A+ +GAVNT++
Sbjct: 66 DYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVV 125
Query: 324 RRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALA 383
DG L G+ TD + A+++A + I GK + GAGGA A+
Sbjct: 126 ND--DGVLTGHITDGTGYMRALKEAGHD-------------IIGKKMTICGAGGAATAIC 170
Query: 384 FGAKSRGA-RVIIFNRN---YERAKALADAVSGEALHFEYLHEFFP--------EKGMIL 431
A G + IFNR Y A+ + ++ + L + + +I
Sbjct: 171 IQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIF 230
Query: 432 ANASAIGMEPNSDQSPVP-KEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFI 490
NA+ +GM+P ++ +P + L+ +V D VY P TRLL A E G ++G+ M +
Sbjct: 231 TNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMML 290
Query: 491 RQALGQFRLFTGGLAPEDFMRKLVL 515
Q F ++T P D++++++
Sbjct: 291 WQGAKAFEIWTHKEMPVDYIKEILF 315
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607;
structural genomics, PSI, protein structure initiative;
1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Length = 271
Score = 307 bits (789), Expect = e-102
Identities = 72/286 (25%), Positives = 125/286 (43%), Gaps = 27/286 (9%)
Query: 233 INPDTKI-FGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAG 291
IN DT++ L P + G HN + N IY D++ + G
Sbjct: 2 INKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRG 59
Query: 292 FSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRE 351
+V +P KE + DE+HP A++I +VNTI+ +G L YNTD + + IE
Sbjct: 60 CAVSMPFKETCMPFLDEIHPSAQAIESVNTIVND--NGFLRAYNTDYIAIVKLIEKYHLN 117
Query: 352 RQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRG-ARVIIFNRNYERAKALADAV 410
+ ++ G+GG +A+ K+ G ++ I+ RN + + LA
Sbjct: 118 K--------------NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY 163
Query: 411 SGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPV--PKEALKAYELVFDAVYTPRN 468
+ Y++ ++ IL N ++IGM+ ++ + PK + + FD V P
Sbjct: 164 G-----YAYINSLENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVE 218
Query: 469 TRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLV 514
T +R A G +SG + + QA+ QF L+T ++ + +
Sbjct: 219 TPFIRYAQARGKQTISGAAVIVLQAVEQFELYTHQRPSDELIAEAA 264
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction,
structural genomics, NPPSFA; 2.25A {Geobacillus
kaustophilus}
Length = 297
Score = 302 bits (777), Expect = e-100
Identities = 95/290 (32%), Positives = 134/290 (46%), Gaps = 19/290 (6%)
Query: 233 INPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFA 290
K++GL+ PV HS P++HN AF Y V V A
Sbjct: 19 QGHMEKVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRALGIA 78
Query: 291 GFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALR 350
G +V IPHK + DEV A+ IGAVNTII DG+LVGYNTD + AL
Sbjct: 79 GVNVTIPHKLAVIPFLDEVDEHARRIGAVNTIINN--DGRLVGYNTDGLGYV----QALE 132
Query: 351 ERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADA 409
E I + GK +++GAGG R + F S A R+ + NR E+A+ L
Sbjct: 133 EEMNIT--------LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVRE 184
Query: 410 VSGEALHFEYLHEF--FPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPR 467
+ L E + I+ N +++GM P + P+ E L+ +V D +Y P
Sbjct: 185 GDERRSAYFSLAEAETRLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYNPL 244
Query: 468 NTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ 517
T+ L+EA GA V +GV M + Q F +TG + M++LV+E
Sbjct: 245 ETKWLKEAKARGARVQNGVGMLVYQGALAFEKWTGQWPDVNRMKQLVIEA 294
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 297 bits (762), Expect = 3e-98
Identities = 77/293 (26%), Positives = 138/293 (47%), Gaps = 23/293 (7%)
Query: 228 YQLEHINPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYS 285
+ IN T+++G++ PV HS P+ N R+ N +Y+ + +++K+ F +
Sbjct: 3 HHHHMINAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFK 62
Query: 286 GTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAI 345
G +V +P KE + D V AK IGAVNT+ +GK GYNTD + ++
Sbjct: 63 ALKVKGINVTVPFKEEIIPLLDYVEDTAKEIGAVNTVKFE--NGKAYGYNTDWIGFLKSL 120
Query: 346 EDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKA 405
+ + K +++GAGGA RA+ + GA+V ++NR E+A
Sbjct: 121 KS-------------LIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIK 167
Query: 406 LADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYT 465
LA E + E + ++ N +++G++ D + +K +V D +Y
Sbjct: 168 LAQKFPLEVV--NSPEEVIDK-VQVIVNTTSVGLKDE-DPEIFNYDLIKKDHVVVDIIYK 223
Query: 466 PRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
T+LL++A E GA ++ G+ M + Q + F+++ G P + V +
Sbjct: 224 E--TKLLKKAKEKGAKLLDGLPMLLWQGIEAFKIWNGCEVPYSVAERSVRDLR 274
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural
genomics, NPPSFA, Na project on protein structural and
functional analyses; HET: SKM; 1.65A {Thermus
thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Length = 263
Score = 293 bits (753), Expect = 4e-97
Identities = 91/282 (32%), Positives = 129/282 (45%), Gaps = 25/282 (8%)
Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVG 295
F ++ +PV HS P +H A G Y + + + F G ++
Sbjct: 2 LRFAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVR-RAFRGVNLT 60
Query: 296 IPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGI 355
+P KE A+A D V P A+ IGAVNT+++ +G+L G+NTD + A++
Sbjct: 61 LPLKEAALAHLDWVSPEAQRIGAVNTVLQV--EGRLFGFNTDAPGFLEALKA-------- 110
Query: 356 NGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL 415
P+ G VL GAGGAGRA+AF + G V ++NR +RA ALA+ A+
Sbjct: 111 -----GGIPLKGPALVL-GAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLRAV 164
Query: 416 HFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREA 475
E E +L NA+ +G+E SP+P E D VY P TR LREA
Sbjct: 165 PLEKAREA-----RLLVNATRVGLEDP-SASPLPAELFPEEGAAVDLVYRPLWTRFLREA 218
Query: 476 AEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ 517
G V +G+ M Q FRL+TG L M +
Sbjct: 219 KAKGLKVQTGLPMLAWQGALAFRLWTGLLPDPSGMEEAARRA 260
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex,
amino-acid biosynthesis, aromatic A biosynthesis, NAD,
oxidoreductase; HET: NAD; 1.00A {Corynebacterium
glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Length = 283
Score = 290 bits (744), Expect = 2e-95
Identities = 75/295 (25%), Positives = 117/295 (39%), Gaps = 29/295 (9%)
Query: 236 DTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV-------DDVKEFFRTYSGTD 288
D+ + GL+ + S+ P +H +Y + D+K
Sbjct: 3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLG 62
Query: 289 FAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDA 348
F G ++ P+K+ + DEV A +GAVNT++ G G+NTD +E+
Sbjct: 63 FNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEG 121
Query: 349 LRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALA 407
L V VGAGG G A+A+ + G ++ + + + RA+ALA
Sbjct: 122 LPN-------------AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA 168
Query: 408 DAVSGEALHFEYLH------EFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFD 461
D ++ + E + NA+ +GM + + L V D
Sbjct: 169 DVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAH-PGTAFDVSCLTKDHWVGD 227
Query: 462 AVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLE 516
VY P T LL+ A +G + G M I QA+ FRLFTG MR+ L
Sbjct: 228 VVYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFTGLEPDVSRMRETFLS 282
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein;
structural genomics, oxidoreductase, amino-acid
biosynthesis; 2.10A {Clostridium acetobutylicum}
Length = 282
Score = 284 bits (730), Expect = 3e-93
Identities = 73/284 (25%), Positives = 122/284 (42%), Gaps = 23/284 (8%)
Query: 233 INPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFA 290
++ +T I+GL+ +GHS +H F GIY V + +KE T+
Sbjct: 1 MSLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPKEKLKESVDTFKIIKCG 60
Query: 291 GFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALR 350
G +V IP+K + E+ A+ IGAVNT+ + G+NTD +
Sbjct: 61 GLNVTIPYKVEVMKELYEISEKARKIGAVNTLKFS--REGISGFNTDYIGFGKMLSKF-- 116
Query: 351 ERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGAR-VIIFNRNYERAKALADA 409
+ I I V++G+GGA RA+ K A+ + + RN E+ +
Sbjct: 117 ---RVE--------IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGE 165
Query: 410 VSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNT 469
+ + ++ L KG ++ N + GM P +SPV KE + + D +Y P T
Sbjct: 166 F--KVISYDELSNL---KGDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYNPVET 220
Query: 470 RLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKL 513
L+ A E G V+G+ M + QA ++ E + ++
Sbjct: 221 LFLKYARESGVKAVNGLYMLVSQAAASEEIWNDISIDEIIVDEI 264
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold,
amino-acid biosynthesis, amino acid biosynthesis, NADP,
oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB:
3doo_A*
Length = 277
Score = 269 bits (690), Expect = 2e-87
Identities = 74/281 (26%), Positives = 134/281 (47%), Gaps = 22/281 (7%)
Query: 240 FGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVGIP 297
F ++ NP+ HS P++H+ F+ Y + V + ++ + S GF+V IP
Sbjct: 3 FAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIP 62
Query: 298 HKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGING 357
HKE + D+++ AKS+GAVNT++ + DGK +GYNTD ++ ++
Sbjct: 63 HKERIIPYLDDINEQAKSVGAVNTVLVK--DGKWIGYNTDGIGYVNGLKQ---------- 110
Query: 358 VASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEALH 416
I +++GAGGA + +A + + NR R + ++ ++
Sbjct: 111 ---IYEGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNIN--KIN 165
Query: 417 FEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAA 476
+ E I+ N + GM N+D S + L ++ LV D VY P T +L EA
Sbjct: 166 LSHAESHLDE-FDIIINTTPAGMNGNTD-SVISLNRLASHTLVSDIVYNPYKTPILIEAE 223
Query: 477 EVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ 517
+ G + +G++MF+ Q F+++T M+ +V+++
Sbjct: 224 QRGNPIYNGLDMFVHQGAESFKIWTNLEPDIKAMKNIVIQK 264
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL
oxidoreductase, alpha/beta domain, rossmann fold; HET:
SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A*
3phj_A*
Length = 269
Score = 250 bits (640), Expect = 5e-80
Identities = 73/287 (25%), Positives = 119/287 (41%), Gaps = 31/287 (10%)
Query: 237 TKIFGLVSNPVGHSKGPILHNPAFR----HTRFNGIYVPMLVDDVKEFFRTYSGTDFAGF 292
K FG+ NP+ HSK P++HN F RF G Y P+L+ + +G
Sbjct: 3 LKSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGA 62
Query: 293 SVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRER 352
+V +P KE A CD++ +A GAVNT++ + +LVGYNTD +++
Sbjct: 63 NVTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQ----- 115
Query: 353 QGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG 412
+ +++GAGG+ +ALA K +G +V + NR+ +
Sbjct: 116 ------------KNYQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQR-LGC 162
Query: 413 EALHFEYLHEFFPEKGMILANASAIGMEPNSDQS-PVPKEALKAYELVFDAVYTPRNTRL 471
+ F ++ NA++ + + V K K +L +D Y T
Sbjct: 163 DCFMEPPKSAF-----DLIINATSASLHNELPLNKEVLKGYFKEGKLAYDLAYGFL-TPF 216
Query: 472 LREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
L A E+ G +M I QA F F+ P +++ F
Sbjct: 217 LSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRSVF 263
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A
{Thermotoga maritima}
Length = 253
Score = 236 bits (604), Expect = 7e-75
Identities = 74/282 (26%), Positives = 122/282 (43%), Gaps = 36/282 (12%)
Query: 240 FGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVGIP 297
F ++ PV HS P L+N F+ N Y + + R ++ GF+ IP
Sbjct: 3 FCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRIL-EEYDGFNATIP 61
Query: 298 HKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGING 357
HKE + + A+ I AVN + R GYNTD + ++E
Sbjct: 62 HKERVMRYVEPS-EDAQRIKAVNCVFR------GKGYNTDWVGVVKSLEGV--------- 105
Query: 358 VASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEALH 416
+ + V+ GAGGA RA+ + G + + NR ERAKAL V +
Sbjct: 106 ------EVKEPVVVV-GAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPV--KIFS 156
Query: 417 FEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAA 476
+ L E + L N +++GM+ ++ PV ++LK LV+D +Y T L+ +A
Sbjct: 157 LDQLDEVVKK-AKSLFNTTSVGMKG--EELPVSDDSLKNLSLVYDVIYFD--TPLVVKAR 211
Query: 477 EVGAT-VVSGVEMFIRQALGQFRLFTGGLAP-EDFMRKLVLE 516
++G ++ G MF QA+ +++ + VL+
Sbjct: 212 KLGVKHIIKGNLMFYYQAMENLKIWGIYDEEVFKEVFGEVLK 253
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft
separation, oxidoreductase; HET: NAP; 1.50A {Escherichia
coli} SCOP: c.2.1.7 c.58.1.5
Length = 271
Score = 220 bits (562), Expect = 2e-68
Identities = 73/284 (25%), Positives = 118/284 (41%), Gaps = 20/284 (7%)
Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVG 295
+ + + NP+ HSK P +H + Y +L +D + G +V
Sbjct: 2 ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVT 61
Query: 296 IPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGI 355
+P KE A A DE+ A GAVNT++R DG+L+G NTD +S +E
Sbjct: 62 VPFKEEAFARADELTERAALAGAVNTLMRLE-DGRLLGDNTDGVGLLSDLER-------- 112
Query: 356 NGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA- 414
+ G +L+GAGGA R + S V I NR RA+ LA +
Sbjct: 113 -----LSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGS 167
Query: 415 LHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLRE 474
+ + E + ++ NA++ G+ D +P + +D Y T L
Sbjct: 168 IQALSMDELEGHEFDLIINATSSGISG--DIPAIPSSLIHPGIYCYDMFYQKGKTPFLAW 225
Query: 475 AAEVGATVVS-GVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ 517
+ G+ + G+ M + QA F L+ G L + + K + E+
Sbjct: 226 CEQRGSKRNADGLGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEE 269
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for
structural genomics of infec diseases, csgid; HET: EPE;
1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A*
3pgj_A* 3o8q_B*
Length = 281
Score = 218 bits (557), Expect = 1e-67
Identities = 63/290 (21%), Positives = 121/290 (41%), Gaps = 22/290 (7%)
Query: 233 INPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFA 290
+ + + NP+ HSK P +H R T+ + IY V D E + +
Sbjct: 4 MASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR 63
Query: 291 GFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALR 350
G +V +P KE A D + A+ GAVNT+ + DG+++G NTD E + +
Sbjct: 64 GCNVTVPFKEEAYRFADRLTERARLAGAVNTLKKLD-DGEILGDNTDGEGLVQDLLA--- 119
Query: 351 ERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRG-ARVIIFNRNYERAKALADA 409
+ G +L+GAGGA R + + A + + NR + +A+ LA+
Sbjct: 120 ----------QQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAEL 169
Query: 410 VSGEA-LHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRN 468
V+ + + + +I+ N+++ ++ + + + + +D +Y
Sbjct: 170 VAAYGEVKAQAFEQLKQSYDVII-NSTSASLDG--ELPAIDPVIFSSRSVCYDMMYGKGY 226
Query: 469 TRLLREAAEVGAT-VVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ 517
T + A + G + G+ M + QA F L+ G + + + +
Sbjct: 227 TVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILRELRKN 276
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A
{Pseudomonas putida}
Length = 272
Score = 213 bits (546), Expect = 5e-66
Identities = 63/285 (22%), Positives = 109/285 (38%), Gaps = 20/285 (7%)
Query: 237 TKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSV 294
+ + ++ P+ H+K P++H + + Y + DD + + G ++
Sbjct: 2 SDRYAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGSLDDFEAQVLQFRSEGGKGMNI 61
Query: 295 GIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQG 354
P K A D A+ A N + DG++V N D + IE+ L E
Sbjct: 62 TAPFKLRAFELADRRSERAQLARAANALKFE--DGRIVAENFDGIGLLRDIEENLGE--- 116
Query: 355 INGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRG-ARVIIFNRNYERAKALADAVSGE 413
P+ + +L+GAGGA R G + ++I NR+ +A AL + +
Sbjct: 117 ---------PLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHS 167
Query: 414 ALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLR 473
L + I+ NA++ + D P+P + L L ++ Y T LR
Sbjct: 168 RLRISRYEALEGQSFDIVVNATSASLTA--DLPPLPADVLGEAALAYELAYGKGLTPFLR 225
Query: 474 EAAEVGA-TVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ 517
A E G + GV M + QA F + G + +
Sbjct: 226 LAREQGQARLADGVGMLVEQAAEAFAWWRGVRPDTRAVINQLTIP 270
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A
{Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB:
1p74_A*
Length = 272
Score = 204 bits (522), Expect = 2e-62
Identities = 58/285 (20%), Positives = 108/285 (37%), Gaps = 21/285 (7%)
Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVG 295
++ + NP+ SK P++ N T Y+ L D ++ + G ++
Sbjct: 2 DLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNIT 61
Query: 296 IPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGI 355
P KE A DE AK A NT+ + DGKL NTD ++ ++
Sbjct: 62 SPFKERAYQLADEYSQRAKLAEACNTLKKLD-DGKLYADNTDGIGLVTDLQR-------- 112
Query: 356 NGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA- 414
+ +++GAGGA + + +++ NR + + K LA+
Sbjct: 113 -----LNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGN 167
Query: 415 LHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYT-PRNTRLLR 473
+ + + ++ NA++ G+ + V E LK +D Y +T +
Sbjct: 168 IQAVSMDSIPLQTYDLVINATSAGLSG--GTASVDAEILKLGSAFYDMQYAKGTDTPFIA 225
Query: 474 EAAEVGA-TVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ 517
+G V G M + QA F L+ G + + + + +
Sbjct: 226 LCKSLGLTNVSDGFGMLVAQAAHSFHLWRGVMPDFVSVYEQLKKA 270
>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; HET: TLA; 1.75A {Aquifex
aeolicus} PDB: 2ysw_A
Length = 219
Score = 139 bits (351), Expect = 2e-38
Identities = 46/230 (20%), Positives = 95/230 (41%), Gaps = 19/230 (8%)
Query: 9 LLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLIQH---PTLPAI 65
+L+ L+ E +++AK +GAD+VEL +D + ++ V + ++ L I
Sbjct: 1 MLIAVPLDDTNFSEN---LKKAKEKGADIVELRVDQFSDTSLNYVKEKLEEVHSQGLKTI 57
Query: 66 VSYRLKS---SRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNT 122
++ R + E L L ++ +++ + I +
Sbjct: 58 LTIRSPEEGGREVKNREE--------LFEELSPLSDYTDIELSSRGLLVKLYNITKEAGK 109
Query: 123 KIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPL 182
K+I+S + N P + +V+ G + K+ + +S D+A + + +
Sbjct: 110 KLIISYH-NFELTPPNWIIREVLREGYRYG-GIPKIAVKANSYEDVARLLCISRQVEGEK 167
Query: 183 IALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEH 232
I +++G G IS+L G FG + Y SL PG L + ++ + +
Sbjct: 168 ILISMGDYGKISRLAGYVFGSVITYCSLEKAFAPGQIPLEEMVELRKKFY 217
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover,
shikimate pathway, lyase; 1.90A {Staphylococcus aureus
subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Length = 238
Score = 135 bits (340), Expect = 1e-36
Identities = 46/237 (19%), Positives = 98/237 (41%), Gaps = 13/237 (5%)
Query: 6 KNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLIQ-----HP 60
+ +V T + EE +++ D++EL ID E + +V ++I
Sbjct: 2 THVEVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQD 61
Query: 61 TLPAIVSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYS-- 118
+ +V+YR K + + A ++ ++++++ D + I +
Sbjct: 62 SFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHL 121
Query: 119 -RSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTH 177
+ N ++I+S + N P ++L + MQ + +KL + + D+ + + ++
Sbjct: 122 QQYNKEVIISHH-NFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMST 180
Query: 178 C----QVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQL 230
++ +++ GLIS+ FGG L YG +G PG + LK L
Sbjct: 181 FSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTL 237
>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis,
3-dehydroquinase, structural genomi NPPSFA; 2.00A
{Geobacillus kaustophilus}
Length = 257
Score = 133 bits (336), Expect = 6e-36
Identities = 38/237 (16%), Positives = 83/237 (35%), Gaps = 12/237 (5%)
Query: 10 LVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME----FSHISEVDKLIQ--HPTLP 63
+C + E ++ E+ + DL+E D + ++ +P
Sbjct: 21 CICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRAIDDQERVLATANGLRNIAGEIP 80
Query: 64 AIVSYRLKSSRKSSDEACKNTCLQVLRRALDLD-VEFVEMDYEVASDPLMSEIIYSRSNT 122
+ + R + + +++ ++ V+ + + +
Sbjct: 81 ILFTIRSEREGGQPIPLNEAEVRRLIEAICRSGAIDLVDYELAYGERIADVRRMTEECSV 140
Query: 123 KIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVF----EMLTHC 178
++VS + G P E L + + GAD+ K+ + S D+ + E
Sbjct: 141 WLVVSRH-YFDGTPRKETLLADMRQAERYGADIAKVAVMPKSPEDVLVLLQATEEARREL 199
Query: 179 QVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHINP 235
+PLI +A+G G I++L G FG + + S PG + ++ V +
Sbjct: 200 AIPLITMAMGGLGAITRLAGWLFGSAVTFAVGNQSSAPGQIPIDDVRTVLSILQTYS 256
>3l9c_A 3-dehydroquinate dehydratase; AROD, amino-acid biosynthesis,
aromatic amino acid biosynthe schiff base, lyase; 1.60A
{Streptococcus mutans}
Length = 259
Score = 124 bits (311), Expect = 2e-32
Identities = 37/236 (15%), Positives = 95/236 (40%), Gaps = 15/236 (6%)
Query: 6 KNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLI--QHPTLP 63
+ S+ + + + EE ++ +++ D++E D + I V I +
Sbjct: 32 RGSMKIVVPVMPQNIEEAN-QLDLTRIDSTDIIEWRADYLVKDDILTVAPAIFEKFSGHE 90
Query: 64 AIVSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTK 123
I + R + + + ++ + A ++++ +Y D ++ E+ +
Sbjct: 91 VIFTLRTEKEGGNISLSNEDYLAIIRDIAALYQPDYIDFEYFSYRD-VLEEM---YDFSN 146
Query: 124 IIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEML-----THC 178
+I+S + + T E L +V + + A V+K+ + + D+ + +
Sbjct: 147 LILSYH---NFEETPENLMEVFSELTALAPRVVKIAVMPKNEQDVLDLMNYTRGFKTLNP 203
Query: 179 QVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHIN 234
+ +++ G IS+L G + SL +S PG +L ++++ ++ N
Sbjct: 204 NQEYVTMSMSKLGRISRLAADLIGSSWTFASLEQESAPGQISLADMRKIKEVLDAN 259
>2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus
pyogenes, dehydroshikimate, PSI-2, protein ST
initiative; HET: MSE; 1.85A {Streptococcus pyogenes
serotype M1}
Length = 231
Score = 122 bits (308), Expect = 3e-32
Identities = 40/237 (16%), Positives = 88/237 (37%), Gaps = 17/237 (7%)
Query: 7 NSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLI--QHPTLPA 64
N++ + + +E QA I+ +K E +L+E D + I V I +
Sbjct: 2 NAMRIVAPVMPRHFDEAQA-IDISKYEDVNLIEWRADFLPKDEIVAVAPAIFEKFAGKEI 60
Query: 65 IVSYRLKSSRKSSDEACKNTCLQVLRRALDLD-VEFVEMDYEVASDPLMSEIIYSRSNTK 123
I + R + + +++ + ++++ +Y +
Sbjct: 61 IFTLRTVQEG-GNITLSSQEYVDIIKEINAIYNPDYIDFEYFTHKSVFQEML----DFPN 115
Query: 124 IIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEML-----THC 178
+I+S + T E L + + M V+K+ + S D+ + +
Sbjct: 116 LILSYHNFEE---TPENLMEAFSEMTKLAPRVVKIAVMPQSEQDVLDLMNYTRGFKTLNP 172
Query: 179 QVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHINP 235
+ +++G G +S+ G G Y SL S PG TL +K++ ++ ++
Sbjct: 173 EQEFATISMGKLGRLSRFAGDVIGSSWTYVSLDHVSGPGQVTLNDMKRIIEVLEMDI 229
>3js3_A 3-dehydroquinate dehydratase; AROD, covalent reaction intermediate,
amino-acid biosynthesis, aromatic amino acid
biosynthesis, lyase; HET: DHS; 2.20A {Clostridium
difficile}
Length = 258
Score = 123 bits (310), Expect = 3e-32
Identities = 43/237 (18%), Positives = 100/237 (42%), Gaps = 13/237 (5%)
Query: 10 LVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-FSHISEVDKLIQH-----PTLP 63
+C + + +++ ++ K D++E +D E +I EV +++ +P
Sbjct: 21 KICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDIP 80
Query: 64 AIVSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSR-SNT 122
+ ++R + + V+ ++++ + + + + ++
Sbjct: 81 LLFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEV 140
Query: 123 KIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEML-----TH 177
K+I+S++ + P E++ + MQ GAD+ K+ + + D+ + E +
Sbjct: 141 KVIISNH-DFNKTPKKEEIVSRLCRMQELGADLPKIAVMPQNEKDVLVLLEATNEMFKIY 199
Query: 178 CQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHIN 234
P+I +++ G+IS+L G FG L +G+ S PG + L V L H +
Sbjct: 200 ADRPIITMSMSGMGVISRLCGEIFGSALTFGAAKSVSAPGQISFKELNSVLNLLHKS 256
>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for
structural genomics of infec diseases, csgid, TIM
barrel, lyase; 1.03A {Salmonella enterica subsp} PDB:
3s42_A 3l2i_A* 3lb0_A 3nnt_A* 3oex_A 3m7w_A 1gqn_A
1l9w_A* 1qfe_A*
Length = 276
Score = 120 bits (301), Expect = 6e-31
Identities = 41/238 (17%), Positives = 96/238 (40%), Gaps = 19/238 (7%)
Query: 10 LVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME----FSHISEVDKLI--QHPTLP 63
+ L +T ++++ + D++E +D + E I P
Sbjct: 41 KIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKP 100
Query: 64 AIVSYRLKS---SRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSR- 119
+ ++R + + + + L V+ ++++ D + + + Y+
Sbjct: 101 LLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGL---VDMIDLELFTGDDEVKATVGYAHQ 157
Query: 120 SNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLT--- 176
N +I+S++ + P E++ + MQ GAD+ K+ + + D+ +
Sbjct: 158 HNVAVIMSNH-DFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQ 216
Query: 177 --HCQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEH 232
+ P+I +++ G+IS+L G FG +G++ S PG ++ L+ V + H
Sbjct: 217 ERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGAISVADLRTVLTILH 274
>2ox1_A 3-dehydroquinate dehydratase; (beta-alpha)8 barrel, lyase; 2.33A
{Archaeoglobus fulgidus}
Length = 196
Score = 109 bits (274), Expect = 7e-28
Identities = 42/207 (20%), Positives = 85/207 (41%), Gaps = 28/207 (13%)
Query: 28 EQAKVEGADLVELCIDSMEFSHISEVDKLIQHPTLPAIVSYRLKS---SRKSSDEACKNT 84
E E AD+VEL ID +FS I++ R S + +
Sbjct: 12 ELELAEKADVVELRIDLFDFSGAR--------VDKEKILTCRRVSDGGKFEGDERER--- 60
Query: 85 CLQVLRRALD-LDVEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGD 143
++ ++RA D L+ ++V+++ ++ N +II S + N P +L
Sbjct: 61 -IEKMKRAFDSLNPDYVDLESDLPDS-------AFDFNCRIIESYH-NFIRTPDYSELKG 111
Query: 144 VIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPLIALAVGSRGLISQLLGPKFGG 203
+ ++ D++K+ S D+ + +LT+ ++A +G R +++L G
Sbjct: 112 I---VEGRRGDLVKIATMGKSKRDVETIVRILTNYD-DVVAFLMGERFSFTRVLAAYLGS 167
Query: 204 FLVYGSLGGKSVPGLPTLVSLKQVYQL 230
+Y +G PG +L +++
Sbjct: 168 PFIYCYVGSPKAPGQISLDDAREIISR 194
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 70.5 bits (172), Expect = 8e-13
Identities = 105/560 (18%), Positives = 184/560 (32%), Gaps = 161/560 (28%)
Query: 8 SLLV-------CTQLECETTEEMQASIEQAKVEGADLVELCIDSMEFSHISE-VDKLIQH 59
LLV +QL+ E+ + + A D E + +E V K + +
Sbjct: 19 VLLVPTASFFIASQLQ----EQFNKILPEPTEGFAA------DD-EPTTPAELVGKFLGY 67
Query: 60 PTLPAIVSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASD------PLMS 113
VS ++ S+ + QVL L EF E Y +D L+
Sbjct: 68 ------VSSLVEPSKVGQFD-------QVLNLCLT---EF-ENCYLEGNDIHALAAKLLQ 110
Query: 114 EIIYSRSNTKIIVSSYLNG---GGKPTTEKLGDVIACMQATGADVMKLEIAV-------- 162
E + TK ++ +Y+ +P +K A +A G +L +A+
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNS--ALFRAVGEGNAQL-VAIFGGQGNTD 167
Query: 163 DSITDLAPVFEMLTHCQVPLIALAVGSRGLISQLL------GPKFG-GFLVYGSLGGKS- 214
D +L +++ LI + +S+L+ F G + L S
Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKFS---AETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 215 VPGLPTL----VSLK--QVYQLEHINPDTKIFGLVSNP---VGHSKGPILHNPAFRHTRF 265
P L +S V QL H K+ G P + KG H+
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF--TPGELRSYLKGATGHS-------- 274
Query: 266 NGIYVPMLV---DDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTI 322
G+ + + D + FF + F +G C E +P S+ +I
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIG--------VRCYEAYPNT-SLPP--SI 323
Query: 323 IRRPIDGKLVGYNTDCESAISAIEDALRER--QGINGVASHTSPIAGKIFVLVGAGGAGR 380
+ ++ N S + +I + +E+ +N SH P ++ +
Sbjct: 324 LEDSLEN-----NEGVPSPMLSISNLTQEQVQDYVNKTNSHL-PAGKQVEI--------- 368
Query: 381 ALAFGAKSRGARVIIFN--RNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIG 438
+L N +N VSG + L+ + L A A
Sbjct: 369 SL-------------VNGAKNL--------VVSGPP---QSLYGL----NLTLRKAKA-- 398
Query: 439 MEPNSDQSPVP--KEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQA-LG 495
DQS +P + LK + F V +P ++ LL A+++ + + +
Sbjct: 399 -PSGLDQSRIPFSERKLK-FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 496 --QFRLFTGGLAPEDFMRKL 513
+ F G D +R L
Sbjct: 457 IPVYDTFDG----SD-LRVL 471
Score = 47.7 bits (113), Expect = 8e-06
Identities = 47/291 (16%), Positives = 83/291 (28%), Gaps = 101/291 (34%)
Query: 123 KIIVSSYLNGGGKPTTEKLGDVIACMQA-TGADVMKLEIAVDSITDLAPVFEMLTHCQVP 181
I+ S N G P+ M + + +++ V+ P + +
Sbjct: 322 SILEDSLENNEGVPS---------PMLSISNLTQEQVQDYVNKTNSHLPAGKQVE----- 367
Query: 182 LIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLP-TLVSLKQVYQLEHINPDTKIF 240
I+L G++ L+ V G P +L L L +
Sbjct: 368 -ISLVNGAKNLV---------------------VSGPPQSLYGLNL--TLRKAKAPS--- 400
Query: 241 GLVSNPVGHSKGPILHNPAFRHTRFNGIYVP-----------MLVDDVKEFFRTYSGTDF 289
GL + + S+ F RF + P ++ D+ + + F
Sbjct: 401 GLDQSRIPFSERK----LKF-SNRFLPVASPFHSHLLVPASDLINKDLVK-----NNVSF 450
Query: 290 AGFSVGIP--HKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIED 347
+ IP +++ I V+ IIR P+ E
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERI--VDCIIRLPVK----------------WET 492
Query: 348 ALRERQGINGVASHTSPIAGKIFVLVGAGGA---GRALAFGAKSRGARVII 395
+ + A+H + G GGA G G RVI+
Sbjct: 493 TTQFK------ATH--------ILDFGPGGASGLGVLTHRNKDGTGVRVIV 529
Score = 43.5 bits (102), Expect = 2e-04
Identities = 46/251 (18%), Positives = 77/251 (30%), Gaps = 77/251 (30%)
Query: 254 ILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLA 313
+++NP F G + ++ YS F G E E++ +
Sbjct: 1665 VINNPVNLTIHFGGEKGKRIREN-------YSAMIFETIVDGKLKTEKIF---KEINEHS 1714
Query: 314 KSIGAVNTIIRRPIDGKLVGYNTDCES---AISAIEDA----LRERQGING---VASHTS 363
S R G L T + A++ +E A L+ + I A H S
Sbjct: 1715 TSY-----TFRSE-KGLL--SAT--QFTQPALTLMEKAAFEDLKSKGLIPADATFAGH-S 1763
Query: 364 PIAGKIFVLVG-----AGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFE 418
+G A A ++ + V+ + R + AV +
Sbjct: 1764 ---------LGEYAALASLAD-VMSIES---LVEVV-----FYRGMTMQVAVPRD----- 1800
Query: 419 YLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAA-- 476
E G +N I + P + +EAL+ V + V + T L E
Sbjct: 1801 -------ELGR--SNYGMIAINPGRVAASFSQEALQY---VVERVG--KRTGWLVEIVNY 1846
Query: 477 --EVGATVVSG 485
E V +G
Sbjct: 1847 NVENQQYVAAG 1857
Score = 37.3 bits (86), Expect = 0.014
Identities = 64/356 (17%), Positives = 97/356 (27%), Gaps = 143/356 (40%)
Query: 74 RKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGG 133
K+S A ++ V RA D F + Y + + +I+ +N + GG
Sbjct: 1636 YKTSKAA-QD----VWNRA---DNHFKD-TYGFS----ILDIV--INNPVNLT--IHFGG 1678
Query: 134 --GKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPLIALAVGSRG 191
GK E M E VD +F+ +
Sbjct: 1679 EKGKRIRENY------------SAMIFETIVDGKLKTEKIFKEINEHSTSYT-------- 1718
Query: 192 LISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHINPDTKIFGLVSNPVGHSK 251
K G L S Q Q P + L+
Sbjct: 1719 ----FRSEK--GLL-----------------SATQFTQ-----P--ALT-LME--KA--- 1742
Query: 252 GPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKE-PAVACCDEVH 310
AF + G+ D FAG S+G E A+A +V
Sbjct: 1743 -------AFEDLKSKGLIPA---DAT-----------FAGHSLG----EYAALASLADVM 1777
Query: 311 PLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIF 370
+ V + R G + + A+ E R G+ + +P
Sbjct: 1778 SIES---LVEVVFYR---GMTM------QVAVPRDELG-RSNYGMIAI----NPGR---- 1816
Query: 371 VLVGAGGAGRALAFGAKSRGAR----VIIFNRN-----YERAKALADAVSGE--AL 415
V A + AL + + G R V I N N Y +G+ AL
Sbjct: 1817 --VAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY--------VAAGDLRAL 1862
Score = 30.4 bits (68), Expect = 1.9
Identities = 50/299 (16%), Positives = 96/299 (32%), Gaps = 79/299 (26%)
Query: 21 EEMQASIEQAKV-EGADLVELCIDSMEFSHISEVDKLIQHPTLPAIV--SYRLKSSRKSS 77
+ + S V AD D+ FS I ++ +P I + K R++
Sbjct: 1634 DLYKTSKAAQDVWNRAD--NHFKDTYGFS-ILDIVI--NNPVNLTIHFGGEKGKRIRENY 1688
Query: 78 DEACKNTCLQVLRRALDLDVEFVEMDYEVAS----DPLMSEIIYSRSNTK--IIVSSYL- 130
T + + + F E++ S ++ + T+ + +
Sbjct: 1689 SAMIFETIVDGKLKTEKI---FKEINEHSTSYTFRSE--KGLLSATQFTQPALTLMEKAA 1743
Query: 131 -----NGGGKPTTEK-----LGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQV 180
+ G P LG+ A A+ ADVM +E V ++ VF
Sbjct: 1744 FEDLKSKGLIPADATFAGHSLGEYAAL--ASLADVMSIESLV----EV--VFY------- 1788
Query: 181 PLIALAVGSRGLISQLLGPKF-GGFLVYGSLG---GKSVPGLPTLVSLKQVYQLEHINPD 236
RG+ Q+ P+ G YG + G+ + +L+ V +E +
Sbjct: 1789 ---------RGMTMQVAVPRDELGRSNYGMIAINPGRVAASF-SQEALQYV--VERVGKR 1836
Query: 237 TKIFGLVS--N---P----V--GHSKG-----PILHNPAFRHTRFNGIYVPMLVDDVKE 279
T LV N V G + +L+ + + + +++V+
Sbjct: 1837 TG--WLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Length = 144
Score = 61.4 bits (150), Expect = 1e-11
Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 16/108 (14%)
Query: 365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFF 424
G +LVG G +A +V + RN + +A A+ E + +
Sbjct: 19 NGGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLI 78
Query: 425 PEKGMILANASAIGMEPNSDQSPVP---KEALKAYELVFD-AVYTPRN 468
+I+ +A S P + +L +L D P N
Sbjct: 79 KNNDVII---TATS-------SKTPIVEERSLMPGKLFIDLGN--PPN 114
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis;
HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP:
a.151.1.1 c.2.1.7 d.58.39.1
Length = 404
Score = 49.1 bits (118), Expect = 2e-06
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 363 SPIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEALHFEYLH 421
+ K ++VGAG G+ +A RG V++ NR YERA LA + GEA+ F+ L
Sbjct: 163 GSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELV 222
Query: 422 EFFPE 426
+
Sbjct: 223 DHLAR 227
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 46.1 bits (109), Expect = 1e-05
Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 344 AIEDALRERQGINGVASHTSP--IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYE 401
AI +++ +G +A + I G ++G G G ++A + GA+V + R +
Sbjct: 130 AIYNSIPTAEGTIMMAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESD 189
Query: 402 RAKALADAVSGEALHFEYLHEFFPE 426
A + E H + +
Sbjct: 190 L-LARIAEMGMEPFHISKAAQELRD 213
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 42.6 bits (101), Expect = 1e-04
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 365 IAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL 415
++ ++ GAG G GRAL G RG +V + R Y+R + + +
Sbjct: 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVI 52
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 40.7 bits (96), Expect = 6e-04
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 365 IAGKIFVLVG-AGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFE 418
+ ++F++ G + G G A+ GA V+ + + A +
Sbjct: 5 LKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRN 59
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 40.7 bits (96), Expect = 6e-04
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 365 IAGKIFVLVG-AGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFE 418
G ++ G AGG G A + G V+I + E+ KALAD + A
Sbjct: 28 FEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAEFVS 82
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 40.7 bits (96), Expect = 6e-04
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 365 IAGKIFVLVG-AGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL 415
+ G + V+ G A G G A A +GA ++ + +A A + +
Sbjct: 10 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCV 61
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 40.7 bits (94), Expect = 0.001
Identities = 26/126 (20%), Positives = 48/126 (38%), Gaps = 14/126 (11%)
Query: 368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALAD------AVSGEALHFEYLH 421
+ +L G+G R G +V + R E AK L+ +S + L
Sbjct: 5 SVLML-GSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALD 63
Query: 422 EFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEV-GA 480
+ ++ I + P + + V K A++ + V Y L +AA+ G
Sbjct: 64 AEVAKHDLV------ISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGI 117
Query: 481 TVVSGV 486
TV++ +
Sbjct: 118 TVMNEI 123
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 0.001
Identities = 38/274 (13%), Positives = 77/274 (28%), Gaps = 77/274 (28%)
Query: 277 VKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVG-YN 335
V++F ++ F + E I + + D ++ YN
Sbjct: 79 VQKFVEEVLRINY-KFLMSPIKTE----QRQPSMMTRMYIEQRDRLYN---DNQVFAKYN 130
Query: 336 TDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGR-ALAFGAKSRGARVI 394
+ AL E + V ++ G G+G+ +A V
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNV------------LIDGVLGSGKTWVA-------LDVC 171
Query: 395 IFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN----SDQS---P 447
+Y+ + + L+ + + PE + + ++PN SD S
Sbjct: 172 ---LSYKVQCKMDFKIF--WLNLKNCNS--PETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 448 VPKEALKA----------YE---LVFDAVY----------------TPRNTRLLREAAEV 478
+ +++A YE LV V T R ++ +
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 479 GATVVSGVEMFI----RQALGQFRLFTGGLAPED 508
T +S + + + P+D
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYL-DCRPQD 317
Score = 37.5 bits (86), Expect = 0.012
Identities = 27/173 (15%), Positives = 45/173 (26%), Gaps = 63/173 (36%)
Query: 8 SLLVCTQLECETTEEMQAS-IEQ----AKVEGADLVELCIDSMEFSHISEVDKLIQHPTL 62
S+ + +++ E + S ++ + DL+ +D +SHI
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI------------ 477
Query: 63 PAIVSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNT 122
+ LK+ L R + LD F+E
Sbjct: 478 ----GHHLKNIEHPERMT--------LFRMVFLDFRFLE--------------------Q 505
Query: 123 KIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEML 175
KI S L L+ I D P +E L
Sbjct: 506 KIRHDSTAWNASGSILNTLQQ--------------LKFYKPYICDNDPKYERL 544
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 39.5 bits (93), Expect = 0.002
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 363 SPIAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL 415
S KI ++ GAG G GRA+A G V + R + + A + +AL
Sbjct: 24 SKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDAL 77
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 39.0 bits (92), Expect = 0.002
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 366 AGKIFVLVGAG---GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFE 418
GK+ ++ GAG G G A F GA+V+I +R+ A+ +A + AL
Sbjct: 8 EGKVALITGAGSGFGEGMAKRFAK--GGAKVVIVDRDKAGAERVAGEIGDAALAVA 61
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 39.3 bits (92), Expect = 0.002
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 365 IAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVS 411
AG+ + G G G L ++G +V I + + +
Sbjct: 6 FAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLE 53
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 38.5 bits (89), Expect = 0.002
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 357 GVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG 412
+ +S G + + G G G++L G V+ +RN + + L
Sbjct: 10 PLTVDSSEKQGVVCIF-GTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEV 64
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 38.7 bits (91), Expect = 0.003
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 366 AGKIFVLVGAG---GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFE 418
++ ++ G G G A F GA V++ + N + A +A+ + +A
Sbjct: 26 NQRVCIVTGGGSGIGRATAELFAK--NGAYVVVADVNEDAAVRVANEIGSKAFGVR 79
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 39.2 bits (92), Expect = 0.003
Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 20/125 (16%)
Query: 373 VGAGGAGRALAFGAKSRGARVIIFNRNYE--RAKALADAVSGEALHFEYLHEFFPEKGMI 430
VG G G A A G + ++ + E + +S L + ++ I
Sbjct: 10 VGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGIL--NEA-DIKADRSFI 66
Query: 431 LANASAIGMEPNSDQSPVPKEALKAYE--------LVFDAVYTPRNTRLLREAAEVGATV 482
+ S++ P+ ++ KA FD L AA+ GA V
Sbjct: 67 ANEVKGARIYGPSEKRPIILQSEKAGNEVGYVLERDKFDK-------HLAALAAKAGADV 119
Query: 483 VSGVE 487
Sbjct: 120 WVKSP 124
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 38.8 bits (91), Expect = 0.003
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 365 IAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG 412
+ G+I ++ GAG G GR A+ +++++++ N + A G
Sbjct: 29 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKG 77
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 38.7 bits (90), Expect = 0.003
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 13/82 (15%)
Query: 333 GYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGA-GGAGRALAFGAKSRGA 391
G NT + ++ + A + GK V++ G G A GA
Sbjct: 97 GSNTTAAAGVALVVKAAGGS------------VKGKKAVVLAGTGPVGMRSAALLAGEGA 144
Query: 392 RVIIFNRNYERAKALADAVSGE 413
V++ R ++A+A AD+V+
Sbjct: 145 EVVLCGRKLDKAQAAADSVNKR 166
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 37.9 bits (89), Expect = 0.003
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 371 VLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADA-----VSGEALHFEYLHE 422
+++G LA SR V+I N++ E + A + G+ H E L +
Sbjct: 4 IIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRD 60
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 38.4 bits (90), Expect = 0.003
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 363 SPIAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVS---GEAL 415
+P+ G++ V+ GA G GR +A GA V I R+ + + +A G+ +
Sbjct: 1 APMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCV 57
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 39.0 bits (91), Expect = 0.003
Identities = 32/132 (24%), Positives = 42/132 (31%), Gaps = 31/132 (23%)
Query: 373 VGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALH---FEYLHE------- 422
+GAG AG A G +V I E+ K + GE+L E+L E
Sbjct: 11 IGAGPAGTVAASLVNKSGFKVKIV----EKQKFPRFVI-GESLLPRCMEHLDEAGFLDAV 65
Query: 423 ----FFPEKGMILANASAIGMEPNSDQSPVPKEALKAYEL---VFDAVYTPRNTRLLREA 475
F + G I SDQ +++ FD L EA
Sbjct: 66 KAQGFQQKFGAKFVRGKEIADFNFSDQFSNGWNW--TWQVPRGNFDK-------TLADEA 116
Query: 476 AEVGATVVSGVE 487
A G V V
Sbjct: 117 ARQGVDVEYEVG 128
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 38.3 bits (90), Expect = 0.004
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 366 AGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL 415
AGK+ +V G G A+A G V+ + + + A A A + A
Sbjct: 28 AGKV-AIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAA 78
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 38.0 bits (89), Expect = 0.005
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 366 AGKIFVLVGA-GGAG----RALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
A + V+ GA G G R LA RGA VI+ R+ + +A A ++G+
Sbjct: 15 AQRTVVITGANSGLGAVTARELA----RRGATVIMAVRDTRKGEAAARTMAGQ 63
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 37.6 bits (88), Expect = 0.005
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 362 TSPIAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVS---GEALHF 417
+ ++GAG G +A + G V RN E+ L + G +
Sbjct: 2 SLTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVAR 61
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 37.8 bits (88), Expect = 0.006
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 6/88 (6%)
Query: 339 ESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNR 398
++I +E + H S ++ VL G G G +A + GA V + R
Sbjct: 134 YNSIPTVEGTIMLAIQHTDYTIHGS----QVAVL-GLGRTGMTIARTFAALGANVKVGAR 188
Query: 399 NYERAKALADAVSGEALHFEYLHEFFPE 426
+ A + H + L E +
Sbjct: 189 SSAH-LARITEMGLVPFHTDELKEHVKD 215
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 38.3 bits (89), Expect = 0.006
Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 16/121 (13%)
Query: 373 VGAGGAGRALAFGAKSRGARVIIF---NRNYERAKALADAVSGEALHFEYLHEFFPEKGM 429
+G G AG + A+ RG ++++ N K DAVS + L +P+
Sbjct: 12 IGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHF--DKLGMPYPKGEE 69
Query: 430 ILANASAIGMEPNSDQSPVPKEALKAYEL---VFDAVYTPRNTRLLREAAEVGATVVSGV 486
+ + I + Q+ + +EL +++ R+L+EA + G +
Sbjct: 70 LENKINGIKLYSPDMQTVWTVNG-EGFELNAPLYNQ-------RVLKEAQDRGVEIWDLT 121
Query: 487 E 487
Sbjct: 122 T 122
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 37.5 bits (88), Expect = 0.006
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
GK+ ++ GA G G+A+A RGA+VI + A+A++D +
Sbjct: 9 GKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNG 57
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 37.4 bits (86), Expect = 0.006
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 368 KIFVLVGAGGAGRALAFGAKSRGARVI-IFNRNYERAKALADAVSGEA 414
I VL+GAG LA +G R++ +++R E A+ LA V E
Sbjct: 12 PI-VLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEY 58
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 37.6 bits (88), Expect = 0.006
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 366 AGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL 415
G++ L+ GA G GRAL + GARV + +++ ER + L A G A+
Sbjct: 4 TGEV-ALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAV 54
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 38.0 bits (88), Expect = 0.006
Identities = 25/134 (18%), Positives = 36/134 (26%), Gaps = 31/134 (23%)
Query: 373 VGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALH---FEYLHE------- 422
+G G AG G V I+ ER+ V GE+L L+
Sbjct: 29 IGGGPAGSVAGLTLHKLGHDVTIY----ERSAFPRYRV-GESLLPGTMSILNRLGLQEKI 83
Query: 423 ----FFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELV-----FDAVYTPRNTRLLR 473
+ + S +P + + + FD LL
Sbjct: 84 DAQNYVKKPSATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDK-------LLLD 136
Query: 474 EAAEVGATVVSGVE 487
EA G TV
Sbjct: 137 EARSRGITVHEETP 150
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 37.1 bits (87), Expect = 0.007
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 362 TSPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYL 420
S + GK+ ++ GA G G A A + GA V I R E+ +AL D ++ L
Sbjct: 2 PSALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVL 61
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 37.3 bits (87), Expect = 0.008
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
G++ ++ G G G+A+ G+ V+I +R ER K+ AD +
Sbjct: 17 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANL 66
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Length = 276
Score = 37.5 bits (86), Expect = 0.008
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 371 VLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL 415
VG G R K R I +R+ +RA+ LA+ G+A
Sbjct: 6 NFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAA 50
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 37.2 bits (87), Expect = 0.009
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 365 IAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALAD 408
+ GK ++ GA G GR +A+ GA V++ R+ E + +
Sbjct: 26 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVS 70
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 37.1 bits (87), Expect = 0.009
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFE 418
GK ++ G+ G GRA A GA V I + + ERA+ A + A +
Sbjct: 7 EGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQ 60
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 37.0 bits (86), Expect = 0.010
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 365 IAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
G+ V+ G G G A A RGAR+++ + + + + + G+
Sbjct: 29 FDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ 78
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 36.7 bits (86), Expect = 0.010
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 366 AGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL 415
+GK V++ GA G G A A + GARV++ + E A A + A
Sbjct: 4 SGKT-VIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAAR 54
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 36.7 bits (86), Expect = 0.012
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 366 AGKIFVLVGAG-GAGR--ALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFE 418
K+ ++ GA G G + GARV++ + A +V A+H
Sbjct: 10 ENKVAIITGACGGIGLETSRVLAR--AGARVVLADLPETDLAGAAASVGRGAVHHV 63
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 36.8 bits (86), Expect = 0.012
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL 415
+G+ ++ G G G A+A GA V I + + A+A+ +
Sbjct: 11 SGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGF 61
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 36.8 bits (86), Expect = 0.013
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
GK+ + G G G G+ + S GA+ +I +R + KA A+ +S +
Sbjct: 25 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT 74
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 36.3 bits (85), Expect = 0.014
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAV 410
+I ++ GA G GR A GA VI+ RN E+ + +A +
Sbjct: 11 NDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHI 56
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 36.8 bits (85), Expect = 0.014
Identities = 26/126 (20%), Positives = 34/126 (26%), Gaps = 16/126 (12%)
Query: 373 VGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILA 432
+G G G LA RG RV++ ER + GE+L +H G+
Sbjct: 13 IGGGPGGSTLASFVAMRGHRVLLL----EREAFPRHQI-GESLLPATVHGICAMLGLTDE 67
Query: 433 NASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNT-----------RLLREAAEVGAT 481
A KE P LLR + G
Sbjct: 68 MKRAGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVD 127
Query: 482 VVSGVE 487
V E
Sbjct: 128 VRERHE 133
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 36.3 bits (85), Expect = 0.015
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 362 TSPIAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL 415
T +AGK ++ GA G G+A+A + GA VI+ + N E AKA A ++ +A
Sbjct: 1 TERLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKAR 55
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 36.3 bits (85), Expect = 0.015
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 366 AGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL 415
GK+ LV GA G G + GA+V + N + LA + ++
Sbjct: 5 QGKV-ALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSM 55
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 36.4 bits (85), Expect = 0.016
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 350 RERQGINGVASHTSPIAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALAD 408
I+ H S ++G++ V+ GA G G A+A S GARV++ R+ E+ +A+
Sbjct: 12 HSSGHIDDDDKHMSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVER 71
Query: 409 AVS---GEAL 415
+ GEA
Sbjct: 72 EIVAAGGEAE 81
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 36.2 bits (83), Expect = 0.016
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
KI VL G G GR +A G V I R+ + A A+ + A
Sbjct: 21 KIAVL-GTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGA 66
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 36.4 bits (85), Expect = 0.016
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 366 AGKIFVLVGAG-GAGR--ALAFGAKSRGARVIIFNRNYERAKALADAVS---GEALHFE 418
GKI ++ GA G GR AL F GA+V++ RN L D ++ GEA
Sbjct: 7 EGKIAIVTGASSGIGRAAALLFAR--EGAKVVVTARNGNALAELTDEIAGGGGEAAALA 63
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 36.0 bits (84), Expect = 0.017
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 366 AGKIFVLV-GAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAV 410
G++ +LV GA G G A A + GA V++ R ++D +
Sbjct: 13 KGRV-ILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQI 58
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 36.8 bits (84), Expect = 0.017
Identities = 24/121 (19%), Positives = 39/121 (32%), Gaps = 14/121 (11%)
Query: 368 KIFVLVGAGGAGRALAFGAKSR-GARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPE 426
K+ V G G L+ A SR G V + + A+ +AL + L E
Sbjct: 4 KVCVC-GGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWT-----KALGADELTVIVNE 57
Query: 427 KGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEV---GATVV 483
K + D P+ A+ ++V V + + A A +V
Sbjct: 58 KDGTQTEVKSRPKVITKD----PEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIV 113
Query: 484 S 484
Sbjct: 114 G 114
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 36.0 bits (84), Expect = 0.018
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 365 IAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVS 411
+ ++ GA G G +A G + G RV++ R+ + + + D +
Sbjct: 5 KQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIM 52
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 36.0 bits (84), Expect = 0.019
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 366 AGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL 415
GK+ LV GA G G + + GA+V+ + E KA+A ++ A
Sbjct: 6 TGKV-ALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAAR 56
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 35.9 bits (84), Expect = 0.020
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
GK ++ GA G G A+A G++VII N E+ K+L +A+
Sbjct: 14 GKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNY 62
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 36.0 bits (84), Expect = 0.021
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL 415
G+ ++ GA GG G A+A ++GA V + ++ K +A + +
Sbjct: 27 GRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVF 76
>2i99_A MU-crystallin homolog; thyroid hormine binding protein,
oxidoreductase; HET: NDP; 2.60A {Homo sapiens}
Length = 312
Score = 36.1 bits (84), Expect = 0.021
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 368 KIFVLVGAGGAGR--ALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
++ ++GAG F + V I+NR E A+ AD V GE
Sbjct: 136 EVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEV 184
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 35.6 bits (81), Expect = 0.022
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
++ +L G G G+ LA + G +++ +R E+A+A A A
Sbjct: 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIA 48
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 35.9 bits (84), Expect = 0.022
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 367 GKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
G + GAG G G + + GAR+I+ +R A +
Sbjct: 11 GACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAA 58
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 35.6 bits (83), Expect = 0.024
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL 415
+ KI V+ GA GG G + SR V RN E ALA+ E +
Sbjct: 3 LKKKIAVVTGATGGMGIEIVK-DLSRDHIVYALGRNPEHLAALAEIEGVEPI 53
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 36.4 bits (84), Expect = 0.024
Identities = 53/390 (13%), Positives = 93/390 (23%), Gaps = 102/390 (26%)
Query: 92 ALDLDVEFVEMDYEVA-----SDPLMSEIIYSRSNTKIIVSSYLNG--GGKPTTEKLGDV 144
++ D+E E E A +I + V L G P + +
Sbjct: 927 IVEEDLEPFEASKETAEQFKHQHGDKVDIFEIPETGEYSVKL-LKGATLYIPKALRFDRL 985
Query: 145 IACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPLIA--LAVGSRGLISQLLGPKFG 202
+A TG + I+ D I+ + P+ L++ A + G+ K+
Sbjct: 986 VAGQIPTGWNAKTYGISDDIISQVDPI------TLFVLVSVVEAFIASGITDPYEMYKYV 1039
Query: 203 GFLVYGSLGGKSVPGLPTLVSLKQVYQLEH-INPDTKIFGLVSNPVGH-------SKGPI 254
G+ G + G+ L + + + + D ++ S GPI
Sbjct: 1040 HVSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPI 1099
Query: 255 ----------LHN--PAFRHTRFNGIYVPMLV------------------------DDVK 278
+ + + +V ++ +
Sbjct: 1100 KTPVGACATSVESVDIGVETILSGKARI-CIVGGYDDFQEEGSFEFGNMKATSNTLEEFE 1158
Query: 279 EFF--RTYS---GTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVG 333
S T GF + A LA +G PI G +
Sbjct: 1159 HGRTPAEMSRPATTTRNGFMEA----QGAGIQIIMQADLALKMGV-------PIYGIVAM 1207
Query: 334 YNTDCESAISAIEDALRERQGINGVASHTS-PIAGKIFVLVGAGGAGRALAFGAKSRGAR 392
S P GK G R K
Sbjct: 1208 A-------------------ATATDKIGRSVPAPGK-----GILTTAREHHSSVKYASPN 1243
Query: 393 VIIFNRNYERAKALADAVSGEALHFEYLHE 422
+ + R + A E L
Sbjct: 1244 LNMKYRKRQLVTREAQIKDWVENELEALKL 1273
Score = 29.8 bits (67), Expect = 2.8
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 366 AGKIFVLVGAGGA--GRALAFGAKSRGARVIIFNRNYERAKA 405
K ++ GAG G + G GA+V++ + +
Sbjct: 475 KDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVT 516
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 35.6 bits (83), Expect = 0.029
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
++ ++ G G G GRA A + GA++ + + + E +A AV A
Sbjct: 12 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETA 61
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 35.3 bits (82), Expect = 0.032
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 366 AGKIFVLVGAG-GAGR--ALAFGAKSRGARVIIFNRNYERAKALADAVS---GEAL 415
+ ++ GAG G GR ALA A G V R + +AD + G+A+
Sbjct: 27 PSPVALITGAGSGIGRATALALAA--DGVTVGALGRTRTEVEEVADEIVGAGGQAI 80
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 34.8 bits (81), Expect = 0.032
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 371 VLV-GA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL 415
VL+ GA GG G A A +G +++ R LA V AL
Sbjct: 3 VLITGATGGLGGAFARAL--KGHDLLLSGRRAGALAELAREVGARAL 47
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 35.2 bits (82), Expect = 0.033
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG 412
+G ++ GAG G GR + GA+V+ R +LA G
Sbjct: 6 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPG 53
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 35.2 bits (82), Expect = 0.033
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVS---GEALHFE 418
K+ ++ G G G+ +A GARV+I R E+ + + G+ L +
Sbjct: 5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQ 61
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 35.2 bits (82), Expect = 0.033
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 350 RERQGINGVASHTSPI---AGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAK 404
G+ SH P AG+I LV G+ G G+ +A G GARV I R+ E
Sbjct: 9 HHSSGLVPRGSHMHPYFSLAGRI-ALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACA 67
Query: 405 ALADAVS--GEAL 415
A +S G+
Sbjct: 68 DTATRLSAYGDCQ 80
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 35.2 bits (82), Expect = 0.034
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVS---GEAL 415
K+ V+ G G G LA +GA +++ R ER + +A V+ AL
Sbjct: 10 TDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRAL 63
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 35.2 bits (82), Expect = 0.035
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 366 AGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
+ + +V G+ G G A GA V R+ ER +A A+
Sbjct: 7 SEAV-AVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRF 56
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 35.0 bits (81), Expect = 0.039
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 367 GKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAV 410
K +LV G+G G + KS+ I + + +
Sbjct: 22 SKN-ILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTI 66
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 35.4 bits (82), Expect = 0.041
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 365 IAGKIFVLVGAGGAGRALAFGAKSRGARVII 395
+AGK+ V+ G G G+ A GARV +
Sbjct: 245 MAGKVAVVCGYGDVGKGSAQSLAGAGARVKV 275
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 35.0 bits (81), Expect = 0.045
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 366 AGKIFVLVGAG-GAGRALAFG---AKSRGARVIIFNRNYERAKALADAVSGEA 414
+ VL GA G GRALA S G+ +++ R+ + L + + +
Sbjct: 5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQ 57
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics,
SGC stockholm, S genomics consortium, SGC, hydrolase,
NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB:
3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A*
1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Length = 436
Score = 35.3 bits (82), Expect = 0.045
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 365 IAGKIFVLVGAGGAGRALAFGAKSRGARVII 395
IAGK + G G G+ A + GARV++
Sbjct: 209 IAGKTACVCGYGDVGKGCAAALRGFGARVVV 239
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 34.8 bits (81), Expect = 0.046
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 366 AGKIFVLVGAG---GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL 415
KI V+ GA G A F A GARV I R + A + G A+
Sbjct: 28 NAKIAVITGATSGIGLAAAKRFVA--EGARVFITGRRKDVLDAAIAEIGGGAV 78
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 34.9 bits (81), Expect = 0.049
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 362 TSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLH 421
TS + G+ ++ G G G++LA A + G VI N + F
Sbjct: 132 TSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNT-TGHPADHFHET----VAFTATA 186
Query: 422 EFFPE 426
+
Sbjct: 187 DALAT 191
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific
opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter
SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 35.0 bits (80), Expect = 0.050
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADA 409
VL G G G A A +G V+ ++ + +R K + D
Sbjct: 6 TYAVL-GLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDR 46
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 34.8 bits (81), Expect = 0.050
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 367 GKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAV 410
++ ++ G G A GARVII + + A + +
Sbjct: 13 NRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDL 57
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt,
oxidoreductase, gluconate utilization; HET: ATR RES P33;
2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Length = 474
Score = 34.9 bits (81), Expect = 0.057
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 372 LVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALH-FEYLHEF 423
+VG G+ LA +SRG V I+NR + + + + L + L EF
Sbjct: 10 VVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEF 62
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 34.2 bits (78), Expect = 0.060
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 373 VGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAV 410
+G+G R+LA G +V++ +RN +R L +
Sbjct: 34 LGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSA 71
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 34.4 bits (80), Expect = 0.061
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 367 GKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAV 410
GK L+ + G G+ +A GA+V + R+ + + +AD +
Sbjct: 32 GKR-ALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEI 76
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 34.4 bits (80), Expect = 0.061
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 367 GKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL 415
K ++ GA G GRA GAR++ + + A+AV +
Sbjct: 5 DKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPV 54
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 34.4 bits (80), Expect = 0.062
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 366 AGKIFVLVGAG---GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL 415
AGK+ V+ G G GAG AF GARV+I +++ +AL + A+
Sbjct: 8 AGKVVVVTGGGRGIGAGIVRAFVN--SGARVVICDKDESGGRALEQEL-PGAV 57
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 34.4 bits (80), Expect = 0.064
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVS---GEAL 415
K+ ++ GAG G GRA+A + V+ +R + + E L
Sbjct: 6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVL 59
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase,
NAD, one-carbon metabolism, phosphoprotein; HET: NAD;
2.25A {Homo sapiens} PDB: 3mtg_A*
Length = 435
Score = 34.9 bits (81), Expect = 0.064
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 365 IAGKIFVLVGAGGAGRALAFGAKSRGARVII 395
GK V+ G G G+ K+ G+ V +
Sbjct: 218 FGGKQVVVCGYGEVGKGCCAALKAMGSIVYV 248
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 34.4 bits (80), Expect = 0.064
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG 412
AG+ ++ GAG G GR + GARV+ +R +L G
Sbjct: 6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPG 53
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 34.0 bits (79), Expect = 0.070
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 367 GKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
K+ V+ GA G G A+A G + + R+ +R + +A + E
Sbjct: 2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQ 50
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 34.7 bits (80), Expect = 0.073
Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 19/98 (19%)
Query: 300 EPAVACCDEVHPLAKSIGAVNTIIRR-PIDGKLVGYNTDCESAISAIEDALRERQGINGV 358
E ++ CD H ++ +R P +L ++ ++A+++
Sbjct: 76 EKSMVYCDSCHSFDFNMPYAKKWLRDEPTIAELAKDKSERQAALASAPH----------- 124
Query: 359 ASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIF 396
T + V+VG+GGAG + A A GA+VI+
Sbjct: 125 --DTVDV-----VVVGSGGAGFSAAISATDSGAKVILI 155
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 34.0 bits (79), Expect = 0.075
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVS---GEALHFE 418
GK ++ GAG G G+ +A + GA V++ + N + A + D + G+A
Sbjct: 10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACR 66
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 34.1 bits (79), Expect = 0.077
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAV 410
+ +++ G G G G+ +A G + GA V+I RN ++ +
Sbjct: 10 QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQEL 55
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 34.1 bits (79), Expect = 0.077
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 365 IAGKIFVLVGAG--GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
I GK+ +V AG G G A A GAR+++F+RN E+ +A A ++
Sbjct: 5 IQGKL-AVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLV 55
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 34.1 bits (79), Expect = 0.084
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 365 IAGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
+ GK+ LV A G GRA A +GA+V + + N E A+ +
Sbjct: 5 VNGKV-ALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF 55
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 34.1 bits (79), Expect = 0.084
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 360 SHTSPIAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
S + ++ G G G A+ A +G RV + NY + ADAV
Sbjct: 19 YFQSMSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGV---NYAANREAADAVVAA 70
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 34.7 bits (80), Expect = 0.084
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 371 VLVGAGGAGRALAFGAKSRGARVIIF 396
V++G+GGAG A A A+ GA+VI+
Sbjct: 130 VIIGSGGAGLAAAVSARDAGAKVILL 155
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose
phosphate pathway, oxidoreductase, 6-phosphogl
dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB:
2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Length = 480
Score = 34.5 bits (80), Expect = 0.087
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 372 LVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALH-FEYLHEF 423
+VG GR LA +SRG V IFNR+ E+ + + G+ L + + EF
Sbjct: 20 VVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF 72
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 34.0 bits (79), Expect = 0.088
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALH 416
GK+ +L A G G+A A GA+VI + N + + L +
Sbjct: 5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRV 56
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 34.1 bits (79), Expect = 0.089
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 359 ASHTSPIAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
+ + P+AGK+ + GAG G GR +A RGA V++ NY + A+ V E
Sbjct: 13 SDASKPLAGKVALTTGAGRGIGRGIAIELGRRGASVVV---NYGSSSKAAEEVVAE 65
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 34.0 bits (79), Expect = 0.089
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS 411
K+ ++ GA G G +A S+GA V+ + A+ +++
Sbjct: 5 EKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMK 50
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 33.8 bits (77), Expect = 0.091
Identities = 26/144 (18%), Positives = 46/144 (31%), Gaps = 16/144 (11%)
Query: 368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEK 427
KI ++ G AG + AK+RG V RN + + L + +
Sbjct: 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDI--NILQKDIFDLTLSDL 59
Query: 428 GMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVE 487
A G+ P+ ++ + + + + + + RLL VV G
Sbjct: 60 SDQNVVVDAYGISPDE-----AEKHVTSLDHLISVLNGTVSPRLL---------VVGGAA 105
Query: 488 MFIRQALGQFRLFTGGLAPEDFMR 511
G L + GL +
Sbjct: 106 SLQIDEDGNTLLESKGLREAPYYP 129
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 34.1 bits (79), Expect = 0.095
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS 411
K+ ++ GA G GR +A + VI +R + ++ D +
Sbjct: 44 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIK 89
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 33.7 bits (78), Expect = 0.099
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 366 AGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL 415
+GK +LV A G GRA GA ++ +R A+ EA+
Sbjct: 5 SGKT-ILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAI 55
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 33.8 bits (78), Expect = 0.10
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 350 RERQGINGVASHTSPIAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALAD 408
G+ SH + ++ ++ GA G G +A G RV + R E +
Sbjct: 5 HHSSGLVPRGSHMATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLK 64
Query: 409 AVSGE 413
+
Sbjct: 65 ELREA 69
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 33.8 bits (78), Expect = 0.10
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYER----AKALADAVSGEAL 415
K+ + G G G G +A G +I +R+ R A+ LA A L
Sbjct: 26 RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCL 80
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 33.7 bits (78), Expect = 0.12
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Query: 366 AGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS---GEAL 415
GK+ LV G G A A G + + + N E + +V EA
Sbjct: 6 NGKV-CLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEAR 59
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 33.9 bits (78), Expect = 0.12
Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 341 AISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRN- 399
+IE+ L ++ + + + ++VG G G ++ G V + NR
Sbjct: 155 IEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRRE 214
Query: 400 -YERAKALADAV 410
E + + +
Sbjct: 215 PTEVEQTVIEET 226
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 33.7 bits (78), Expect = 0.12
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 366 AGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAV 410
K+ +V G+ G G A+ GA+V+ + + + ++D
Sbjct: 13 TDKV-AIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHF 58
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 33.6 bits (78), Expect = 0.12
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 367 GKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVS---GEALHFE 418
K+ ++ G+G G G+A A GA V++ + N E A+A+A + G A+
Sbjct: 9 NKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVA 64
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 33.4 bits (77), Expect = 0.13
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
+ GA G G A A G +++ R ER +ALA +S +
Sbjct: 17 GSHMSSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKT 69
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 33.3 bits (77), Expect = 0.13
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 366 AGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
GK L+ G G +A + GAR+++ R+ A A+ +
Sbjct: 19 DGKR-ALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQF 68
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 33.3 bits (77), Expect = 0.13
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 352 RQGINGVASHTSPIAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAV 410
G + + K+ ++ GA G G A+A S G V+I NY A A+ V
Sbjct: 12 DLGTENLYFQSMMETNKVAIVTGASRGIGAAIAARLASDGFTVVI---NYAGKAAAAEEV 68
Query: 411 SGE 413
+G+
Sbjct: 69 AGK 71
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 33.0 bits (76), Expect = 0.15
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 366 AGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG 412
+ V+V G G G A+ K G V+ + + V G
Sbjct: 2 SSGK-VIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDG 49
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 33.4 bits (77), Expect = 0.15
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
G+I ++ G G G GR +A + G V+I R + A A + G
Sbjct: 32 EGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRT 81
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 33.3 bits (77), Expect = 0.16
Identities = 19/48 (39%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 365 IAGKIFVLVGAG--GAGRALAFGAKSRGARVIIFNRNYERAKALADAV 410
I K VLV A G GRA+A GA V I RN E K
Sbjct: 17 IRDKG-VLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRY 63
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 33.2 bits (77), Expect = 0.16
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 366 AGKIFVLV--GAGGAGRALA--FGAKSRGARVIIFNRNYERAKALADAVS--GEAL 415
GK+ ++ G G G A+A F GA+V+I R+ + + A +V +
Sbjct: 5 DGKV-AIITGGTLGIGLAIATKFVE--EGAKVMITGRHSDVGEKAAKSVGTPDQIQ 57
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 33.3 bits (77), Expect = 0.17
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS 411
++ ++ GA G GRA+A RGA VI A+ + A
Sbjct: 28 KQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFK 73
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 33.1 bits (76), Expect = 0.18
Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 3/55 (5%)
Query: 362 TSPIAGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
+ + VLV G G G ++R V + + + V
Sbjct: 2 AASGEARR-VLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTD 55
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 32.9 bits (76), Expect = 0.18
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 366 AGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL 415
GK +V G G G A GA V++ RN + +
Sbjct: 7 QGKK-AIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVH 57
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 33.2 bits (76), Expect = 0.20
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 349 LRERQGINGVASHTSPIAGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKAL 406
G+ SH + + LV A GR++A G + G V + +Y R+ A
Sbjct: 28 HHHSSGLVPRGSHMTAPTVPV-ALVTGAAKRLGRSIAEGLHAEGYAVCL---HYHRSAAE 83
Query: 407 ADAVSGE 413
A+A+S
Sbjct: 84 ANALSAT 90
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 31.3 bits (71), Expect = 0.20
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 368 KIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALAD 408
I V+ GAG G+ +A K+ V + + + L
Sbjct: 7 NICVV-GAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR 47
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 32.5 bits (75), Expect = 0.22
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL 415
+ V+ GA G G LA + G + R+ + + + +S
Sbjct: 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVG 50
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 32.6 bits (75), Expect = 0.22
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 365 IAGKIFVLVG-AGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFE 418
I + V+ G A G G A GA+V++ + + + + A
Sbjct: 7 IRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIR---GEDVVADLGDRARFAA 58
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 32.5 bits (75), Expect = 0.24
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 367 GKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVS---GEAL 415
+ ++ GA G GRA+A GA V++ + E A+A+A A+ G+A+
Sbjct: 12 DAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAI 64
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 32.5 bits (75), Expect = 0.27
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
+ K+ ++ GA GG G +A GA++++ R R +A+A +
Sbjct: 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDA 51
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 32.6 bits (75), Expect = 0.27
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 362 TSPIAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
+ + + G G G A+A +RG V R+ + A D +
Sbjct: 19 SHMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAA 71
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 32.5 bits (75), Expect = 0.28
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
+ V+ GAG GRA A GA V++ Y A A E
Sbjct: 7 TNRTIVVAGAGRDIGRACAIRFAQEGANVVL---TYNGAAEGAATAVAE 52
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 32.2 bits (74), Expect = 0.29
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 359 ASHTSPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALAD 408
K+ V+ GA G G A+A G +++ R ER KAL
Sbjct: 8 QQMGRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNL 58
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 32.1 bits (74), Expect = 0.31
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 366 AGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYL 420
GK LV A G G A A G + GARVI+ + D ++ + +
Sbjct: 8 TGKT-ALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGV 63
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 32.1 bits (74), Expect = 0.31
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 365 IAGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
I+GK+ ++ + G G A+A G GA +++ R +R A ++ +
Sbjct: 5 ISGKV-AVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKF 55
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 32.7 bits (75), Expect = 0.32
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 371 VLVGAGGAGRALAFGAKSRGARVIIF 396
V+ G G AG A + A GA V++
Sbjct: 45 VVAGYGIAGVAASIEAARAGADVLVL 70
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 32.2 bits (74), Expect = 0.33
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 365 IAGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALAD 408
+ K V+ GG G + R + + E ALA+
Sbjct: 3 LTNKN-VIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAE 47
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 32.1 bits (74), Expect = 0.36
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
+ ++ GAG G GRA++ GA V + + A+ + G
Sbjct: 6 RSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGP 54
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 32.1 bits (74), Expect = 0.36
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
K+ ++ + G G A+A GA V++ +R E + GE
Sbjct: 13 ENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGE 61
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 32.1 bits (74), Expect = 0.36
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 367 GKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALAD 408
++ GA G G A A ++G RV + R+ +R +ALA
Sbjct: 5 KGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAA 47
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase,
proline biosynthesis, NAD(P protein, rossmann fold,
doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes}
SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Length = 259
Score = 32.1 bits (74), Expect = 0.36
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 373 VGAGGAGRALAFGAKSRGARVIIFNRNYERAKALAD 408
+G G A+ G K +II + ER+K +A+
Sbjct: 9 IGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAE 44
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 31.9 bits (73), Expect = 0.38
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL 415
++ V+ G R L K++G + RN E+ L + + + +
Sbjct: 23 RVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIV 70
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 31.8 bits (73), Expect = 0.40
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 6/50 (12%)
Query: 366 AGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
+ +L+ + G A G RVII +Y A +
Sbjct: 26 SSAP-ILITGASQRVGLHCALRLLEHGHRVII---SYRTEHASVTELRQA 71
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 31.9 bits (73), Expect = 0.43
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 362 TSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLH 421
+ G+ +++G G G+ +A K G +V+ +R+ R +A D V L+
Sbjct: 135 YQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRS-GRERAGFDQVYQ----LPALN 189
Query: 422 EFFPE 426
+ +
Sbjct: 190 KMLAQ 194
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 31.9 bits (73), Expect = 0.43
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 360 SHTSPIAGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
SH + + LV A GR++A G + G V + +Y R+ A A+A+S
Sbjct: 2 SHMTAPTVPV-ALVTGAAKRLGRSIAEGLHAEGYAVCL---HYHRSAAEANALSAT 53
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 31.8 bits (73), Expect = 0.43
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
+ GK ++ G+ G G+A+A + GA V+I R E + +
Sbjct: 8 LKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQ 57
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 31.7 bits (73), Expect = 0.46
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 374 GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS---GEALHFE 418
G G+A+A G V I + N AKA+A ++ G A+ +
Sbjct: 10 AGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVK 57
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 31.6 bits (72), Expect = 0.48
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 366 AGKIFVLVGA-GGAGRALAFG-AKSRGARVIIFNRNYERAKALADAVSGEALHFEYLH 421
+ ++ G G G A+ + V++ R+ R +A + E L +
Sbjct: 3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQ 60
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 31.8 bits (73), Expect = 0.49
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 356 NGVASHTSPIAGKIFVLV--GAGGAGRALAFGAKSRGARVII-FNRNYERAKALADAVSG 412
+G+ S + +V A GRA+A G RV+I ++ + E A +LAD ++
Sbjct: 12 SGLVPRGSHMEAPA-AVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNK 70
Query: 413 EA 414
E
Sbjct: 71 ER 72
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 31.9 bits (73), Expect = 0.53
Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 22/114 (19%)
Query: 323 IRRPIDGKLVGYNTDCESAISAIEDALR-----------------ERQGINGVASHTSPI 365
+RR LV + D + + +E +R A P+
Sbjct: 152 LRRGATVSLVYLSADAKPGATGLESTMRFILSAKSAYVDGQVFRVGAADSTPPADWDKPL 211
Query: 366 AGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNY--ERAKALADAVSGEAL 415
GK+ +V A G G +A GA V+ + + E K +AD V G AL
Sbjct: 212 DGKV-AVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVADKVGGTAL 264
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 31.1 bits (71), Expect = 0.53
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADA 409
KI + GA G G A G V + R+ R +
Sbjct: 5 KIAI-FGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPR 46
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 32.0 bits (73), Expect = 0.55
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 371 VLVGAGGAGRALAFGAKSRGARVIIF 396
++VGAG AG + AK GA VI+
Sbjct: 125 LVVGAGSAGFNASLAAKKAGANVILV 150
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 31.4 bits (72), Expect = 0.55
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 371 VLV-GA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFE 418
VLV GA G G + +G +VI R ER + L D + +
Sbjct: 3 VLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQ 52
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 31.5 bits (72), Expect = 0.58
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALAD 408
++ ++ GA GG G A+A +G +V+ R + LA
Sbjct: 30 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAA 74
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 31.7 bits (71), Expect = 0.58
Identities = 22/125 (17%), Positives = 34/125 (27%), Gaps = 11/125 (8%)
Query: 368 KIFVLVGAGGAGRALAFGAKSR--GARVIIFNRNYERAKALADAVSGEALHFEYLHEFFP 425
KI V +GAG AG A K + I E+ G L +
Sbjct: 2 KILV-IGAGPAGLVFASQLKQARPLWAIDI----VEKNDEQEVLGWGVVLPGR-PGQHPA 55
Query: 426 EKGMILANASAIGMEPNSDQSPVPK--EALKAYELVFDAVYTPRNTRLLREAA-EVGATV 482
L + + D V +L + ++ V LR+ G +
Sbjct: 56 NPLSYLDAPERLNPQFLEDFKLVHHNEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAI 115
Query: 483 VSGVE 487
Sbjct: 116 RFESP 120
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 31.6 bits (72), Expect = 0.60
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 354 GINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
G+ SH + ++ K ++G G G +A + G V + YER + G
Sbjct: 13 GLVPRGSHMNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSV----YERDNDREARIFGG 68
Query: 414 ALH 416
L
Sbjct: 69 TLD 71
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 31.3 bits (72), Expect = 0.60
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 371 VLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADA 409
V+V G G G+ + G +V + + +R+ A
Sbjct: 5 VIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKE 45
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
national project on protein structural and function
analyses; 2.71A {Thermus thermophilus}
Length = 369
Score = 31.7 bits (73), Expect = 0.61
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 354 GINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALAD 408
G+ GVA + +L G G G A A GA+V I + N++R + L D
Sbjct: 160 GVPGVA------PASVVIL-GGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDD 207
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB:
1pjb_A* 1say_A
Length = 361
Score = 31.6 bits (73), Expect = 0.64
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 354 GINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALAD 408
G+ GV GK+ +L G G G A A GA+V IF+ N ER L
Sbjct: 161 GVPGVK------PGKVVIL-GGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLET 208
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 31.1 bits (70), Expect = 0.66
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAV 410
KI VL G AG A+ A+ RG V+ R+ ++A A
Sbjct: 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGAT 44
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI;
2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A
2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Length = 377
Score = 31.3 bits (72), Expect = 0.66
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 354 GINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALAD 408
G+ GV + V+ GAG AG A A GA V + + N ++ + L
Sbjct: 162 GVPGVE------PADVVVI-GAGTAGYNAARIANGMGATVTVLDINIDKLRQLDA 209
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle,
antiviral protein; 2.40A {Homo sapiens}
Length = 271
Score = 31.1 bits (70), Expect = 0.69
Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 23/95 (24%)
Query: 272 MLVDDVKEFFRTYSGTDFAGFSVGIPHK--------------EPAVACCDEVHPLAKSIG 317
+L +++F Y G + GF + ++ EPAV V +
Sbjct: 63 ILSRKIQKFENQYRGRELPGF---VNYRTFETIVKQQIKALEEPAVDMLHTVTDM----- 114
Query: 318 AVNTIIRRPIDGKLVGYNTDCESAISAIEDALRER 352
V + +A S IED E+
Sbjct: 115 -VRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQ 148
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands,
dimer, cavity, oxidoreductase; 2.30A {Pseudomonas
putida}
Length = 430
Score = 31.4 bits (70), Expect = 0.69
Identities = 19/125 (15%), Positives = 31/125 (24%), Gaps = 2/125 (1%)
Query: 361 HTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALH-FEY 419
K +VGAG AG L + V ++ + ++ A +
Sbjct: 16 PRGSHMKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTV 75
Query: 420 LHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAV-YTPRNTRLLREAAEV 478
E + + P P + AV Y L+R
Sbjct: 76 QREVALDVNEWPSEEFGYFGHYYYVGGPQPMRFYGDLKAPSRAVDYRLYQPMLMRALEAR 135
Query: 479 GATVV 483
G
Sbjct: 136 GGKFC 140
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 31.4 bits (72), Expect = 0.69
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAV 410
GKI ++ GA G G A+A GA ++ + N E A
Sbjct: 33 KGKIALVTGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAY 78
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 31.0 bits (71), Expect = 0.75
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 367 GKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS 411
GK+ V +GG G A+A GA V I+ ++ +
Sbjct: 34 GKV-ASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQK 79
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 31.4 bits (72), Expect = 0.75
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 357 GVASHT---SPIAGKIFVLVGAGGAGRALAFGAKSRGAR-VIIFNRNYER---AKAL-AD 408
G A T PI+GK ++ GAG G AK+ GA VI+ + R AK + AD
Sbjct: 155 GNAVDTVLAGPISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGAD 214
Query: 409 AV 410
V
Sbjct: 215 YV 216
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 31.2 bits (71), Expect = 0.76
Identities = 25/89 (28%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 330 KLVGYNTDCESAISAIEDALRERQG--INGVASHTSPI-AGKIFVLVGAGGAGRALAFGA 386
L E + +L E N V I G V++G G G A
Sbjct: 174 SLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAIL 233
Query: 387 KSRGAR-VIIFNRNYER---AKAL-ADAV 410
K GA VI+ + R AK L AD V
Sbjct: 234 KHAGASKVILSEPSEVRRNLAKELGADHV 262
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 30.9 bits (71), Expect = 0.78
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 366 AGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
G LV G+ G G + S GA V +RN + +
Sbjct: 8 EGCT-ALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK 56
>1fm0_E Molybdopterin convertin factor, subunit 2; molybdenum cofactor
biosynthesis, transferase; 1.45A {Escherichia coli}
SCOP: d.41.5.1 PDB: 1fma_E 1nvi_E 3bii_E 1nvj_A
Length = 150
Score = 30.3 bits (69), Expect = 0.79
Identities = 25/87 (28%), Positives = 31/87 (35%), Gaps = 14/87 (16%)
Query: 313 AKSIGAVNT---IIRRPIDGKLV------GYNTDCESAISAIEDALRERQGINGVA-SH- 361
GAV T +R G V Y E A++ I D R R + V H
Sbjct: 25 RDEDGAVVTFTGKVRNHNLGDSVNALTLEHYPGMTEKALAEIVDEARNRWPLGRVTVIHR 84
Query: 362 --TSPIAGKIFVLVGAGGAGRALAFGA 386
+I V VG A R+ AF A
Sbjct: 85 IGELWPGDEI-VFVGVTSAHRSSAFEA 110
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 31.0 bits (71), Expect = 0.79
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 366 AGKIFVLV-GAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAV 410
+ K V++ G+ G GR A GA V I R+ ER + +
Sbjct: 5 SNKT-VIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQII 50
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers,
NAD binding DOMA amino acid insertional region,
hydrolase; HET: ADN NAD; 1.60A {Mycobacterium
tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Length = 494
Score = 31.3 bits (71), Expect = 0.81
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 365 IAGKIFVLVGAGGAGRALAFGAKSRGARVII 395
I GK ++ G G G+ A K +GARV +
Sbjct: 272 IGGKKVLICGYGDVGKGCAEAMKGQGARVSV 302
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer,
rossmann-fold NAD domain, human MU crystallin homolog;
HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13
PDB: 1vll_A
Length = 322
Score = 31.1 bits (71), Expect = 0.81
Identities = 7/53 (13%), Positives = 13/53 (24%), Gaps = 2/53 (3%)
Query: 368 KIFVLVGAGGAGR--ALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFE 418
+F +G G A V ++ + AK +
Sbjct: 126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS 178
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 31.0 bits (71), Expect = 0.82
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 367 GKIFVLVGAGGA---GRALAFGAKSRGARVII-FNRNYERAKALADAVS 411
GK+ V+ GA G G A G GA V I + + A+ +
Sbjct: 20 GKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELE 68
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 31.0 bits (71), Expect = 0.83
Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 360 SHTSPIAGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADA 409
+ + K+ +++ G G A +++ +Y +AK A
Sbjct: 4 TKYHDLKNKV-IVIAGGIKNLGALTAKTFALESVNLVL---HYHQAKDSDTA 51
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 31.0 bits (71), Expect = 0.84
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 366 AGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAV 410
G LV G+ G G A+ GARV +RN + +
Sbjct: 20 KGTT-ALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIW 65
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 31.0 bits (71), Expect = 0.85
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 366 AGKIFVLVGAGGA--GRALAFGAKSRGARVIIFNRNYERAKALADA 409
GK+ ++ A G G A A GA V+I + + R D
Sbjct: 21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQ 66
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 31.1 bits (70), Expect = 0.86
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 367 GKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
+ V+ G G G + S G V++ R+ + + +
Sbjct: 12 RRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNS 59
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 30.7 bits (70), Expect = 0.87
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 374 GAGGAGRALAFGAKSRGARVIIFNRNYERAKALA 407
GA G GRA A K+RG RV++ + E +
Sbjct: 10 GASGLGRAAALALKARGYRVVVLDLRREGEDLIY 43
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 31.1 bits (71), Expect = 0.87
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 373 VGAGGAGRALAFGAKSRGARVIIFNRNYERAKALA 407
+GAG G + A K G + YE K +
Sbjct: 29 IGAGIGGLSAAVALKQSGIDCDV----YEAVKEIK 59
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 30.9 bits (71), Expect = 0.87
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 374 GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAV 410
G+ G GRA+A +RG RV I +RN E A AV
Sbjct: 10 GSRGIGRAIAEALVARGYRVAIASRNPEEAAQSLGAV 46
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 31.1 bits (71), Expect = 0.89
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 371 VLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAV 410
G G+A+ A + G R I R+ + L+D +
Sbjct: 173 QNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRL 212
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 30.6 bits (70), Expect = 0.89
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 6/52 (11%)
Query: 366 AGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL 415
+GK V V G G A A GA+V + + E +
Sbjct: 6 SGKN-VWVTGAGKGIGYATALAFVEAGAKVTG---FDQAFTQEQYPFATEVM 53
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane
protein, heme protein, iron sulfur PROT cytochrome B,
oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus
gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A*
1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A*
3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A*
3aec_A* ...
Length = 621
Score = 31.1 bits (71), Expect = 0.91
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 371 VLVGAGGAG-RALAFGAKSRGARVII 395
V+VGAGGAG RA AFG G
Sbjct: 22 VVVGAGGAGLRA-AFGLSEAGFNTAC 46
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 30.0 bits (68), Expect = 0.92
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALAD----AVSGEALHFEYLHE 422
K F ++G G G ++ G V+ + N E+ A A AV A L
Sbjct: 7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLS 65
>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds
L-proline, 2 bundle, beta barrel, rossmann fold, lyase;
HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP:
c.2.1.13 PDB: 1u7h_A*
Length = 350
Score = 30.8 bits (70), Expect = 0.94
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 368 KIFVLVGAGGAGR--ALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
+ L+G G ALAF ++ ++ + L +
Sbjct: 130 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEY 177
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Length = 660
Score = 31.1 bits (71), Expect = 0.97
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 371 VLVGAGGAG-RALAFGAKSRGARVIIF 396
+++G G AG RA A + +G I+
Sbjct: 9 LVIGGGLAGLRA-AVATQQKGLSTIVL 34
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 31.0 bits (71), Expect = 0.98
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 371 VLVGAGGAGRALAFGAKSRGARVIIFNRNY 400
V++G G G A+A+ +F
Sbjct: 21 VVIGGGIIGSAIAYYLAKENKNTALFESGT 50
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
DSS, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Length = 286
Score = 30.6 bits (69), Expect = 0.98
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 362 TSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADA 409
++ + G + G G R L+ +G R+I +RN ++ +A+ +
Sbjct: 1 SNAMTGTLLS-FGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRAS 47
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol
dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE;
1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A*
3nto_A* 3ntq_A* 3ntr_A*
Length = 344
Score = 30.8 bits (70), Expect = 1.0
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 372 LVGAGGAGR--ALAFGAKSRGARVI-IFNRNYERAKALADAVSGEALHFEYLHEFF 424
++G G G+ K GA ++ + + N E A+ + + A +
Sbjct: 7 VIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLL 62
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 30.6 bits (70), Expect = 1.0
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 366 AGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
GK VL+ + G G A A GA+V + + +A A D
Sbjct: 6 KGKR-VLITGSSQGIGLATARLFARAGAKVGL---HGRKAPANIDETIAS 51
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 31.0 bits (71), Expect = 1.0
Identities = 24/142 (16%), Positives = 42/142 (29%), Gaps = 33/142 (23%)
Query: 365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFF 424
K +++G +G A A GA V + + A ++ E +
Sbjct: 7 FENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVV-CGSH- 64
Query: 425 PEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYT----PRNTRLLREAAEVGA 480
P E L F + P N ++++A E
Sbjct: 65 ------------------------PLELLDE---DFCYMIKNPGIPYNNPMVKKALEKQI 97
Query: 481 TVVSGVEMFIRQALGQFRLFTG 502
V++ VE+ + Q TG
Sbjct: 98 PVLTEVELAYLVSESQLIGITG 119
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 30.6 bits (70), Expect = 1.1
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 366 AGKIFVLV--GAGGAGR--ALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLH 421
K+ ++ GAGG G A F GA+V+I + + + + + + G ++H
Sbjct: 15 QDKV-AIITGGAGGIGETTAKLFVR--YGAKVVIADIADDHGQKVCNNI-GSPDVISFVH 70
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 30.8 bits (70), Expect = 1.1
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
+ KI ++ G G G A ++ G + I +R A+A+++ A
Sbjct: 18 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRE---DWAVAESILANA 66
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 30.5 bits (70), Expect = 1.1
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 367 GKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
++ +V + G G A+A +RG RV + + E + A
Sbjct: 2 SRV-AIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAY 50
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA
NAD-binding rossmann fold, structural genomics; HET:
NAD; 2.40A {Lactobacillus plantarum WCFS1}
Length = 346
Score = 30.7 bits (70), Expect = 1.1
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 372 LVGAGGAGR--ALAFGAKSRGARVI-IFNRNYERAKALADAVSGEALHFEY 419
++G G G A K +G +++ + + + + + E + Y
Sbjct: 13 IIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNY 63
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium
falciparum} SCOP: c.2.1.4 c.23.12.3
Length = 479
Score = 30.9 bits (70), Expect = 1.1
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 365 IAGKIFVLVGAGGAGRALAFGAKSRGARVII 395
I+GKI V+ G G G+ A K GARV I
Sbjct: 255 ISGKIVVICGYGDVGKGCASSMKGLGARVYI 285
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 30.7 bits (70), Expect = 1.1
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 366 AGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAV 410
+GK V++ + G GR+ A GA+V I RN +R + +
Sbjct: 25 SGKS-VIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQI 70
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 30.6 bits (69), Expect = 1.1
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 360 SHTSPIAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAV 410
+T +AG + GA G G+A+A A GA ++I + + L +
Sbjct: 38 PNTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTI 89
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 30.4 bits (69), Expect = 1.1
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADA 409
KIF+ VG+ G G++L + ++ R E+ +
Sbjct: 2 KIFI-VGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNV 43
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 30.6 bits (70), Expect = 1.1
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 367 GKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
K ++ G+ G G+A A G ++I NY R+K A + E
Sbjct: 4 NKCALVTGSSRGVGKAAAIRLAENGYNIVI---NYARSKKAALETAEE 48
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 30.6 bits (70), Expect = 1.2
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
Query: 344 AIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERA 403
++ A +E G + + G + G G +AL + GA++++ + N
Sbjct: 157 GMKAAAKEAFG-------SDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAV 209
Query: 404 KAL-----ADAVSGEALH 416
A ADAV+ A++
Sbjct: 210 SAAVAEEGADAVAPNAIY 227
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 30.2 bits (69), Expect = 1.2
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 367 GKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
G+ V+V G G GR +A GA V + R+ A +
Sbjct: 10 GRS-VVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLG 58
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2,
protein structure initiative; 2.01A {Desulfitobacterium
hafniense dcb-2} SCOP: c.67.3.1 PDB: 3l5o_A
Length = 270
Score = 30.5 bits (68), Expect = 1.2
Identities = 31/231 (13%), Positives = 66/231 (28%), Gaps = 32/231 (13%)
Query: 289 FAGFSVGIPHKEPAVACCDEVHPLAKSIG--AVNTIIRRPIDGKLVGYNTDCESAISAIE 346
+G+P + A C + + SIG A+N P + G +
Sbjct: 70 LTQNLLGLPLRV-AAGCVKSWNYVEASIGLAAINAYYNNPQVAREHGVIFS--------D 120
Query: 347 DALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKAL 406
E + + + + GK +VG +L + I E +
Sbjct: 121 AKRVEDRMNDPFIMSQNEVKGKKVGVVGHFPHLESL----LEPICDLSIL----EWSPEE 172
Query: 407 ADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTP 466
D + PE + +++ + + + + A + TP
Sbjct: 173 GDYPLPAS------EFILPECDYVYITCASVV---DKTLPRLLELSRNARRITLVGPGTP 223
Query: 467 RNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ 517
L E G +SG + + + +K+ +++
Sbjct: 224 ----LAPVLFEHGLQELSGFMVKDNARAFRIVAGAEKVKIYSAGQKVTIKK 270
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 30.6 bits (70), Expect = 1.2
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 357 GVASHT----SPIAGKIFVLVGAGGAGRALAFGAKSRGAR-VIIFNRNYER---AKALAD 408
G A HT S ++GK ++ GAG G A ++ GA +++ + N R A+ AD
Sbjct: 151 GNAVHTVYAGSGVSGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYAD 210
Query: 409 AV 410
+
Sbjct: 211 RL 212
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 30.2 bits (69), Expect = 1.2
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 366 AGKIFVLVGAG---GAGRALAFGAKSRGARVIIFNRNYERAKALADAV 410
A K+ ++ G+ G A+ F GA+V I R+ ER + +
Sbjct: 5 AEKVAIITGSSNGIGRATAVLFAR--EGAKVTITGRHAERLEETRQQI 50
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase,
CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP:
a.100.1.1 c.2.1.6
Length = 478
Score = 30.7 bits (70), Expect = 1.2
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 372 LVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALH-----FEYLHEFF-- 424
+VG G G LA +G +V +FNR Y +++ A + FE + F
Sbjct: 6 VVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAAS 65
Query: 425 ---PEKGMILANASA 436
P K +IL A A
Sbjct: 66 LKKPRKALILVQAGA 80
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 30.2 bits (69), Expect = 1.3
Identities = 12/46 (26%), Positives = 14/46 (30%), Gaps = 3/46 (6%)
Query: 366 AGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADA 409
K VLV G G G A+ GA + RN
Sbjct: 13 KAKT-VLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSK 57
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A*
2wu2_A* 2wu5_A*
Length = 588
Score = 30.7 bits (70), Expect = 1.3
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 371 VLVGAGGAG-RALAFGAKSRGARVII 395
V++GAGGAG RA A G +
Sbjct: 11 VVIGAGGAGMRA-ALQISQSGQTCAL 35
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
1.79A {Cytophaga hutchinsonii atcc 33406}
Length = 634
Score = 30.7 bits (70), Expect = 1.4
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 20 TEEMQASIEQAKVEGADLV---ELCI 42
+ + +IE+AK +++ ELCI
Sbjct: 24 VKNILDAIEEAKNANVEILCLPELCI 49
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 30.3 bits (69), Expect = 1.4
Identities = 12/72 (16%), Positives = 20/72 (27%), Gaps = 6/72 (8%)
Query: 371 VLV--GAGGAGRA--LAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPE 426
+ + A G G A G VI +R +A G + +
Sbjct: 4 IAITGSASGIGAALKELLAR--AGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGG 61
Query: 427 KGMILANASAIG 438
L + +G
Sbjct: 62 VLDGLVCCAGVG 73
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 30.2 bits (67), Expect = 1.5
Identities = 14/149 (9%), Positives = 38/149 (25%), Gaps = 32/149 (21%)
Query: 373 VGAGGAGRALAFGAKSRGARVIIFNRN---YERAKALADAVSGEALHFEYLHEFFPEKGM 429
+G G + G RV + E ++ + + + + ++
Sbjct: 129 IGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNV------------ 176
Query: 430 ILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMF 489
I + + I ++++ A R+ R + +
Sbjct: 177 ITGDETVIDGLE--------------FDVLMVAALAEPKRRVFRNIHRYVD---TETRII 219
Query: 490 IRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
R G + ++ +D
Sbjct: 220 YRTYTGMRAILYAPVSDDDITGFRRAGVV 248
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 30.3 bits (69), Expect = 1.6
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 362 TSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLH 421
++GAG G +A ++ G + ++R+ ++ ++ G E L
Sbjct: 134 EYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRS-RKSWPGVESYVGR----EELR 188
Query: 422 EFFPE 426
F +
Sbjct: 189 AFLNQ 193
>3fbg_A Putative arginate lyase; structural genomics, unknown function,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus haemolyticus}
Length = 346
Score = 30.3 bits (69), Expect = 1.6
Identities = 32/174 (18%), Positives = 55/174 (31%), Gaps = 35/174 (20%)
Query: 341 AISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVII---FN 397
I+A E L + GI+ + + ++ GAGG G AK+ G RVI N
Sbjct: 129 GITAYE-TLFDVFGISRNRNENE--GKTLLIINGAGGVGSIATQIAKAYGLRVITTASRN 185
Query: 398 RNYERAKAL-ADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAY 456
E K + AD V + + + ++
Sbjct: 186 ETIEWTKKMGADIV------LNHKESLLNQ---------------------FKTQGIELV 218
Query: 457 ELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFM 510
+ VF T + + + + + V Q L + + + E FM
Sbjct: 219 DYVFCTFNTDMYYDDMIQLVKPRGHIATIVAFENDQDLNALKPKSLSFSHE-FM 271
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 29.8 bits (66), Expect = 1.6
Identities = 13/123 (10%), Positives = 35/123 (28%), Gaps = 7/123 (5%)
Query: 373 VGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILA 432
G G G+A+ + G V + + + A+ + L + L
Sbjct: 25 FGKGNMGQAIGHNFEIAGHEVTYYGSKDQATTLGEIVIM--AVPYPALAALAKQYATQLK 82
Query: 433 NASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQ 492
+ + +P+ + + D+ + L ++ + A +
Sbjct: 83 GKIVVDIT-----NPLNFDTWDDLVVPADSSAAQELQQQLPDSQVLKAFNTTFAATLQSG 137
Query: 493 ALG 495
+
Sbjct: 138 QVN 140
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 29.8 bits (68), Expect = 1.7
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 367 GKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
GK +V + G G+A+A+ + GA +++ N A DA + E
Sbjct: 5 GKT-AIVTGSSRGLGKAIAWKLGNMGANIVL---NGSPASTSLDATAEE 49
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination,
NAD, zinc, inhibition, acetylation, metal-binding; HET:
NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB:
1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A*
1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A
1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Length = 374
Score = 30.3 bits (69), Expect = 1.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 366 AGKIFVLVGAGGAGRALAFGAKSRGARVII 395
G + G GG G ++ G K+ GA II
Sbjct: 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARII 220
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 29.8 bits (68), Expect = 1.8
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
+I ++ GA G GRA+A + GA+V + NY + AD V
Sbjct: 28 DRIALVTGASRGIGRAIALELAAAGAKVAV---NYASSAGAADEVVAA 72
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 29.9 bits (68), Expect = 1.9
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 371 VLV-GAGGAGR-ALAFGAKSRGARVIIFNRN---YERAKAL-ADAV 410
V+V G GG L AK+ GA VI+ + + +RA AL AD
Sbjct: 193 VVVQGTGGVALFGLQI-AKATGAEVIVTSSSREKLDRAFALGADHG 237
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase,
posttranslational modification, binding domain, rossmann
fold domain; HET: SLL NAD; 1.55A {Homo sapiens} PDB:
3rig_A* 2b4y_A* 2nyr_A*
Length = 273
Score = 29.9 bits (68), Expect = 1.9
Identities = 8/34 (23%), Positives = 9/34 (26%), Gaps = 4/34 (11%)
Query: 386 AKSRGARVIIFNRNYERAKALADAV----SGEAL 415
+RG V FN A G L
Sbjct: 235 VAARGVPVAEFNTETTPATNRFRFHFQGPCGTTL 268
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976,
oxidoreductase, phospholipid biosynthesis; HET: EPE;
2.10A {Coxiella burnetii}
Length = 356
Score = 29.8 bits (68), Expect = 1.9
Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 27/133 (20%)
Query: 362 TSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLH 421
P I +L GAG G ALA +G +V +++ + + G + YL
Sbjct: 25 MEPFKHPIAIL-GAGSWGTALALVLARKGQKVRLWSYESDHVDEMQA--EGV--NNRYLP 79
Query: 422 EF-FPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTP--RNT-RLLREAAE 477
+ FPE ++ D K +L+ + V + ++ +
Sbjct: 80 NYPFPE-----------TLKAYCD----LKASLEGVTDILIVVPSFAFHEVITRMKPLID 124
Query: 478 VGATVVS---GVE 487
+ G+
Sbjct: 125 AKTRIAWGTKGLA 137
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 29.6 bits (67), Expect = 2.0
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 371 VLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKA-LADAVSGEALHFEYLHEFF 424
+++ A G G A ++ G +++ + A L+ A + + L +
Sbjct: 4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCS 60
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 30.1 bits (67), Expect = 2.0
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 345 IEDALRERQGINGVASHTSPIAGKI----FVLVGAGGAGRALAFGAKSRGARVIIF 396
+ D ++T+ + +++VGAG AG LA S G RV+I
Sbjct: 3 MTDLPSAVTNERTEQTNTTNEQQESKGFDYLIVGAGFAGSVLAERLASSGQRVLIV 58
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 29.9 bits (68), Expect = 2.0
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 367 GKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADA 409
+ VLV G G GR +A GA V + R+ ++
Sbjct: 41 ARS-VLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAE 84
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 29.9 bits (68), Expect = 2.1
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 371 VLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKAL----ADAV 410
++ GA + + AK G R I+ R E+ L A V
Sbjct: 168 FVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHV 213
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 29.8 bits (68), Expect = 2.1
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 359 ASHTSPI-----AGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS 411
SH +P K ++V G G G A + GA V + R+ A + + V
Sbjct: 1 GSHMAPGFTISFVNKT-IIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVG 59
Query: 412 GEA 414
E
Sbjct: 60 KEF 62
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 29.8 bits (68), Expect = 2.1
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 367 GKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADA 409
G++ ++ G G G +A G G V++ +RN E A A
Sbjct: 21 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQK 64
>3sdb_A Glutamine-dependent NAD(+) synthetase;
glutamine-amidotransferase, glutaminase,
glutamine-dependent synthetase, ligase; 2.00A
{Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A*
3szg_A* 3dla_A* 3syt_A*
Length = 680
Score = 30.1 bits (68), Expect = 2.2
Identities = 5/26 (19%), Positives = 8/26 (30%), Gaps = 3/26 (11%)
Query: 20 TEEMQASIEQAKVEGADLV---ELCI 42
+ +GA L EL +
Sbjct: 31 AASVLDMARACHDDGAALAVFPELTL 56
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 29.8 bits (68), Expect = 2.2
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 12/77 (15%)
Query: 344 AIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVI---IFNRNY 400
A++ + R + G ++ G G G +LA A GA+++
Sbjct: 160 AMKATVAHR--------GLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERV 211
Query: 401 ERAKAL-ADAVSGEALH 416
A AL AV+ E +
Sbjct: 212 AHAVALGHTAVALEDVL 228
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 29.9 bits (68), Expect = 2.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 366 AGKIFVLVGAGGAGRALAFGAKSRGARVII 395
G + + G GG G A+ G K GA II
Sbjct: 190 PGSVCAVFGLGGVGLAVIMGCKVAGASRII 219
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional
regulation, redox poise; HET: ATP; 2.0A {Bacillus
subtilis} PDB: 2vt2_A*
Length = 215
Score = 29.5 bits (66), Expect = 2.2
Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 23/91 (25%)
Query: 312 LAKSIGAVNTIIRRPID------GKLVGYNTDCESAISAIEDALRERQGINGVASHTSPI 365
L+ ++ + IRR K GY + + +S L + + +
Sbjct: 39 LSDAVKVDSATIRRDFSYFGALGKKGYGY--NVDYLLSFFRKTLDQDEMTD--------- 87
Query: 366 AGKIFVLVGAGGAGRALA--FGAKSRGARVI 394
+L+G G G A K+ ++
Sbjct: 88 ----VILIGVGNLGTAFLHYNFTKNNNTKIS 114
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus}
SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Length = 376
Score = 29.9 bits (68), Expect = 2.2
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 366 AGKIFVLVGAGGAGRALAFGAKSRGARVII---FNRN-YERAKAL 406
G + G G G + G K GA II N + +AKAL
Sbjct: 195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL 239
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2,
protein structure in midwest center for structural
genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella
typhimurium}
Length = 357
Score = 29.6 bits (67), Expect = 2.2
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 372 LVGAGGAGR--ALAFGAKSRGARVI-IFNRNYERAKALADAVSGEALHFEYLHEFF 424
+VG G G G V+ + + RA+A D + EA + H+
Sbjct: 28 IVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLI 83
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold,
oxidoreductase; HET: FLC; 2.37A {Saccharomyces
cerevisiae}
Length = 497
Score = 29.9 bits (68), Expect = 2.3
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 372 LVGAGGAGRALAFGAKSRGARVIIFNRNYERAKA-LADAVSGEALH-FEYLHEF 423
L+G G+ L A G V +NR + LA+ G+++ + +F
Sbjct: 15 LIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDF 68
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint
center for structural genomics, JCSG, protein structu
initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga
maritima}
Length = 335
Score = 29.8 bits (68), Expect = 2.4
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 354 GINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALAD 408
G + + H + + FVL GAG G A G VI++ R E +
Sbjct: 2 GSDKIHHHHHHMEMRFFVL-GAGSWGTVFAQMLHENGEEVILWARRKEIVDLINV 55
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein,
winged helix, rossmann fold, NAD+; HET: NAD; 1.50A
{Streptococcus agalactiae serogroup iiiorganism_taxid}
PDB: 3keq_A* 3ket_A*
Length = 212
Score = 29.1 bits (65), Expect = 2.5
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 23/91 (25%)
Query: 312 LAKSIGAVNTIIRRPID------GKLVGYNTDCESAISAIEDALRERQGINGVASHTSPI 365
+A ++G + +RR + GY D + ++ + L + N
Sbjct: 38 IADALGIDSATVRRDFSYFGELGRRGFGY--DVKKLMNFFAEILNDHSTTN--------- 86
Query: 366 AGKIFVLVGAGGAGRALA--FGAKSRGARVI 394
+LVG G GRAL ++
Sbjct: 87 ----VMLVGCGNIGRALLHYRFHDRNKMQIS 113
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 29.4 bits (67), Expect = 2.5
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 4/48 (8%)
Query: 367 GKIFVLV--GAGGAGRALAFGAKSRGARVII-FNRNYERAKALADAVS 411
+I V G GG G ++ G RV+ N R +
Sbjct: 13 QRI-AYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQK 59
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
S-adenosyl-L-homocysteine hydro NAD, one-carbon
metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei}
PDB: 3glq_A*
Length = 494
Score = 29.7 bits (67), Expect = 2.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 365 IAGKIFVLVGAGGAGRALAFGAKSRGARVII 395
IAGKI V+ G G G+ A + GA V +
Sbjct: 275 IAGKIAVVAGYGDVGKGCAQSLRGLGATVWV 305
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 29.5 bits (67), Expect = 2.5
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFF 424
+ G+ + G G G+ +A ++ G V+++ R + +A AD + E F
Sbjct: 158 LKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFA----VAESKDALF 213
Query: 425 PE 426
+
Sbjct: 214 EQ 215
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex,
separation-OF-function helix-hairpin-helix, DNA repair;
HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A*
1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A*
1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A
1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Length = 360
Score = 29.7 bits (66), Expect = 2.6
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 54 DKLIQHPTLPAIVSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVAS-DPLM 112
D++ + + KS L+ +R+ LDV ++ + S D
Sbjct: 76 DQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHF 135
Query: 113 SEII 116
E+
Sbjct: 136 QEVA 139
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 29.9 bits (67), Expect = 2.6
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 371 VLV-GAGGAGRALAFGAKSRGARVII 395
VLV GAG AG A A A GARV++
Sbjct: 131 VLVVGAGPAGLAAAREASRSGARVML 156
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 29.4 bits (67), Expect = 2.6
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 366 AGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAV 410
K+ V+V + G GRA+A G++VI + + + +A D +
Sbjct: 7 RDKV-VIVTGASMGIGRAIAERFVDEGSKVIDLSIH-DPGEAKYDHI 51
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc,
PSI-biology, structural genomics; 1.91A {Legionella
pneumophila subsp}
Length = 297
Score = 29.3 bits (66), Expect = 2.6
Identities = 10/81 (12%), Positives = 22/81 (27%), Gaps = 10/81 (12%)
Query: 317 GAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAG 376
G + + I + + TD S ++ + N + TS
Sbjct: 151 GIKTILQDKGIFFEELDVGTDPNQVQSRVKSYFKIHPETNIIFCLTSQ---------ALD 201
Query: 377 GAGRAL-AFGAKSRGARVIIF 396
G+ L + ++
Sbjct: 202 PLGQMLLHPDRYDFNYQPQVY 222
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein
structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA
family oxidoreductase; 2.65A {Vibrio cholerae} SCOP:
c.2.1.3 d.81.1.5
Length = 323
Score = 29.3 bits (66), Expect = 2.7
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 372 LVGAGGAGRA--LAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEY 419
++G G + L A+ +++ RN + LA A +Y
Sbjct: 7 MIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDY 56
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase
(CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1
c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*
Length = 482
Score = 29.5 bits (67), Expect = 2.7
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 372 LVGAGGAGRALAFGAKSRGARVIIFNRNYERAKA-LADAVSGEALH-FEYLHEFF----- 424
L+G G+ L G V FNR + LA+ G + L E
Sbjct: 7 LIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKK 66
Query: 425 PEKGMILANA 434
P + ++L A
Sbjct: 67 PRRIILLVKA 76
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 29.5 bits (67), Expect = 2.7
Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 6/50 (12%)
Query: 367 GKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
++ V G GG G A++ G V + ++
Sbjct: 25 KRV-AFVTGGMGGLGAAISRRLHDAGMAVAV---SHSERNDHVSTWLMHE 70
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB:
3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Length = 371
Score = 29.4 bits (66), Expect = 2.9
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 7/53 (13%)
Query: 230 LEHINPDTKIFGLVSNP---VGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKE 279
L ++ D +++NP +G+S L + T Y P L+ E
Sbjct: 126 LPFLDYDA----IIANPKIIIGYSDTTALLAGIYAKTGLITFYGPALIPSFGE 174
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 29.3 bits (65), Expect = 3.1
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 370 FVLVGAGGAGRALAFGAKSRGARVIIF 396
+++VG+G G A K +V++
Sbjct: 4 YIIVGSGLFGAVCANELKKLNKKVLVI 30
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone
oxidoreductases, NADPH, cytoplasm and oxidoreductase;
HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Length = 334
Score = 29.1 bits (66), Expect = 3.1
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 371 VLV--GAGGAGRALAFGAKSRGARVI 394
VL+ AGG G L K +GA I
Sbjct: 152 VLLFAAAGGVGLILNQLLKMKGAHTI 177
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 29.1 bits (66), Expect = 3.2
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 354 GINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVII 395
+ + AGK V+ GAG G A+S GA +I
Sbjct: 183 AYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVI 224
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase
(CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias}
SCOP: b.35.1.2 c.2.1.1
Length = 374
Score = 29.1 bits (66), Expect = 3.2
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 366 AGKIFVLVGAGGAGRALAFGAKSRGARVII 395
G + G G G A G S GA+ II
Sbjct: 192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRII 221
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 29.0 bits (66), Expect = 3.2
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
GK+ V+ G+ G G+++A + A+V++ NY + A++V E
Sbjct: 6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVV---NYRSKEDEANSVLEE 51
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 29.0 bits (66), Expect = 3.4
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
GK+ ++ GA G GRA+A +GA V++ NY + A+ V E
Sbjct: 4 GKVALVTGASRGIGRAIAIDLAKQGANVVV---NYAGNEQKANEVVDE 48
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 29.6 bits (67), Expect = 3.4
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 368 KIFVLVGAGGAGRALAFGAKSRGARVIIF 396
+ V VGAG AG A A A +RG +V +F
Sbjct: 375 NLAV-VGAGPAGLAFAINAAARGHQVTLF 402
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 29.3 bits (66), Expect = 3.4
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 367 GKIFVLVGAG-GAGRALAFGAKSRGARVII-----FNRNYERAKALADAVSGE 413
K+ ++ GAG G G+ + GA+V++ AD V E
Sbjct: 8 DKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDE 60
Score = 28.1 bits (63), Expect = 8.9
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 340 SAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNR 398
+ + + + R+ + + T + K+ ++ GAG G G+ A GA+V++
Sbjct: 295 NDYATLTNEARKLPANDASGAPTVSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVV--- 351
Query: 399 NYERAKALADAVSGE 413
N + A E
Sbjct: 352 NDFKD---ATKTVDE 363
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 29.1 bits (66), Expect = 3.4
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 371 VLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKAL----ADAV 410
+LV G A ++ R+I RN + + L A V
Sbjct: 148 LLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYV 193
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 29.0 bits (66), Expect = 3.5
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
K ++ GA G GR++A G V + NY +K A+AV E
Sbjct: 4 TKSALVTGASRGIGRSIALQLAEEGYNVAV---NYAGSKEKAEAVVEE 48
>1x3l_A Hypothetical protein PH0495; structural genomics, riken structural
genomics/proteomics in RSGI, NPPSFA; 2.10A {Pyrococcus
horikoshii}
Length = 440
Score = 29.1 bits (64), Expect = 3.7
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 2/75 (2%)
Query: 343 SAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARV-IIFNRNYE 401
A+ +A++ V I GK++V + G A +A + + Y
Sbjct: 25 RAVLNAVKVSDDKIIVQGKEFEIKGKVYV-IALGKAACEMARAIEDILDVEDGVAVTKYG 83
Query: 402 RAKALADAVSGEALH 416
K L EA H
Sbjct: 84 YGKELKRIKVIEAGH 98
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 29.1 bits (66), Expect = 3.7
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 6/50 (12%)
Query: 367 GKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
+ L+ G G G+ + ++G V + Y + +
Sbjct: 7 VRH-ALITAGTKGLGKQVTEKLLAKGYSVTV---TYHSDTTAMETMKETY 52
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 29.1 bits (66), Expect = 3.7
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 11/93 (11%)
Query: 333 GYNTDC--ESAISAIEDALRE--------RQGINGVASHTSPIAGKIFVLVGAGGAGRAL 382
G N D E A++ + + ++G G I G+ ++G G G +
Sbjct: 80 GSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRV 139
Query: 383 AFGAKSRGARVIIFNRNYERAKALADAVSGEAL 415
+ GA+V F+R + S E
Sbjct: 140 GKILAALGAQVRGFSR-TPKEGPWRFTNSLEEA 171
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 28.8 bits (65), Expect = 3.8
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 362 TSPIAGKIFVLVGA-GGAGRALAFGAKSRG---ARVIIFNRNYERAKALADAVSGE 413
+A K ++ GA G G+A A ++I+ R E+ + L + E
Sbjct: 28 AERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQE 83
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology,
NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana
perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Length = 373
Score = 29.1 bits (66), Expect = 3.9
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 366 AGKIFVLVGAGGAGRALAFGAKSRGARVII 395
G + G GG G + G K+ GA II
Sbjct: 191 PGSTCAVFGLGGVGFSAIVGCKAAGASRII 220
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium
channel, sodium selective, gated ION channel; HET: BNG
PX4; 3.05A {Alpha proteobacterium HIMB114}
Length = 229
Score = 28.8 bits (65), Expect = 3.9
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 428 GMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYT 465
+I+ NA IG + P+ E + + +
Sbjct: 20 SIIILNAVLIGAT-TYELDPLFLETIHLLDYGITIFFV 56
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 28.9 bits (65), Expect = 3.9
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 367 GKIFVLVGAG-GAGRALAFGAKSRGARVII 395
G++ ++ GAG G GRA A + GARV++
Sbjct: 27 GRVVIVTGAGGGIGRAHALAFAAEGARVVV 56
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF
protein, center for structu genomics of infectious
diseases, immune system; 1.50A {Bacillus anthracis} PDB:
3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Length = 336
Score = 28.8 bits (65), Expect = 4.0
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 230 LEHINPDTKIFGLVSNP---VGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEF 280
L +I+ D +NP +G+S L + T Y P LV EF
Sbjct: 96 LPYIDYDA----FQNNPKIMIGYSDATALLLGIYAKTGIPTFYGPALVPSFGEF 145
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 28.9 bits (65), Expect = 4.0
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 367 GKIFVLVGAG-GAGRALAFGAKSRGARVII 395
G++ ++ GAG G GRA A RGA V++
Sbjct: 9 GRVVLVTGAGGGLGRAYALAFAERGALVVV 38
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 29.0 bits (65), Expect = 4.0
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 367 GKIFVLVGAG-GAGRALAFGAKSRGARVII 395
G++ V+ GAG G GR A RGA+V++
Sbjct: 19 GRVAVVTGAGAGLGREYALLFAERGAKVVV 48
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 28.6 bits (65), Expect = 4.1
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADA 409
GK+ ++ G+ G GRA+A S G+ VII + ERAKA+A+
Sbjct: 7 GKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEE 50
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases, csgid,
niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 29.1 bits (66), Expect = 4.1
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 371 VLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS------GEALHFEYLHE 422
++VG G G +LA + V + RN +RA+ L++ + G+A E L E
Sbjct: 239 MIVGGGNIGASLA-KRLEQTYSVKLIERNLQRAEKLSEELENTIVFCGDAADQELLTE 295
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET:
NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Length = 325
Score = 28.7 bits (65), Expect = 4.2
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 370 FVLV--GAGGAGRALAFGAKSRGARVI 394
+L AGG G AK+ GA++I
Sbjct: 143 IILFHAAAGGVGSLACQWAKALGAKLI 169
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide,
receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Length = 375
Score = 28.9 bits (65), Expect = 4.2
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 15/70 (21%)
Query: 348 ALRERQGINGVASHTSPIAG-KIFVLVGAGGAGRALAFG---AKSRGARVIIF--NRNYE 401
A+ + G+ + G ++ +L +GG G F K+ A V E
Sbjct: 170 AINKVGGL-----NDKNCTGKRVLILGASGGVG---TFAIQVMKAWDAHVTAVCSQDASE 221
Query: 402 RAKAL-ADAV 410
+ L AD V
Sbjct: 222 LVRKLGADDV 231
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase,
oxidoreductase; 1.30A {Burkholderia SP}
Length = 333
Score = 28.7 bits (65), Expect = 4.5
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 371 VLV--GAGGAGRALAFGAKSRGARVI 394
VL+ AGG G + A+ GA VI
Sbjct: 149 VLIHAAAGGMGHIMVPWARHLGATVI 174
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 28.5 bits (64), Expect = 4.6
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHE 422
KI + G G G LA ++G V R+ + A + + + L
Sbjct: 5 KILI-AGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLAS 58
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 28.9 bits (64), Expect = 4.6
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 370 FVLVGAGGAGRALAFGAKSRGARVIIF 396
++VGAG +G + +G +V I
Sbjct: 6 ILIVGAGFSGAVIGRQLAEKGHQVHII 32
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 28.6 bits (64), Expect = 4.8
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 371 VLV--GAGGAGRALAFGAKSRGARVIIFNR---NYERAKAL-ADAV 410
VL+ +GG G K+ G + +AL D V
Sbjct: 224 VLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLV 269
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP:
b.35.1.2 c.2.1.1
Length = 327
Score = 28.7 bits (65), Expect = 4.9
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 370 FVLV--GAGGAGRALAFGAKSRGARVI 394
L AGG G AK+ GA++I
Sbjct: 143 QFLFHAAAGGVGLIACQWAKALGAKLI 169
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 28.3 bits (64), Expect = 5.0
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 367 GKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAV 410
K+ V++ + G G L + R RV+ K AD
Sbjct: 28 QKV-VVITGASQGIGAGLVRAYRDRNYRVVA---TSRSIKPSADPD 69
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 28.3 bits (64), Expect = 5.1
Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 6/56 (10%)
Query: 360 SHTSPIAGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
S + A + +V G G G +A + G + I V E
Sbjct: 22 SMMTQKARPV-AIVTGGRRGIGLGIARALAASGFDIAI---TGIGDAEGVAPVIAE 73
>4ffh_A Levan fructotransferase; glycoside hydrolase; HET: SUC; 2.20A
{Arthrobacter ureafaciens} PDB: 4ffi_A* 4ffg_A* 4fff_A
Length = 492
Score = 28.5 bits (64), Expect = 5.3
Identities = 17/119 (14%), Positives = 34/119 (28%), Gaps = 16/119 (13%)
Query: 55 KLIQHPTLPAIVSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEV------AS 108
L+ P + A+ +Y ++ + L RA +++++ S
Sbjct: 319 TLLSTP-VAALTNYVTATTTLPDRTVDGSAVLPWNGRAYEIELDIAWDTATNVGISVGRS 377
Query: 109 DPLMSEIIYSRSNTKIIV----SSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVD 163
+ + V S P + + GA + L I VD
Sbjct: 378 PDGTRHTNIGKYGADLYVDRGPSDLAGYSLAPYSRAAAPIDP-----GARSVHLRILVD 431
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 28.3 bits (64), Expect = 5.5
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKAL 406
+ GK ++G GG GR +A AK+ G RVI + R + +
Sbjct: 120 LYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTR-SSVDQNV 160
>1ll7_A Chitinase 1; beta-alpha barrel, hydrolase; 2.00A {Coccidioides
immitis} SCOP: c.1.8.5 d.26.3.1 PDB: 1d2k_A 1ll4_A*
1ll6_A
Length = 392
Score = 28.4 bits (64), Expect = 5.5
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 18/74 (24%)
Query: 216 PGLPTLVSLKQVYQLEHINPDTKIFGLVSNPVG---HSKG--PILHNPAFRHTRFNGIYV 270
PG +KQ+Y L+ N + K L+S +G +S R
Sbjct: 66 PGNNVYGCIKQMYLLKKNNRNLKT--LLS--IGGWTYSPNFKTPASTEEGRKK------- 114
Query: 271 PMLVDDVKEFFRTY 284
D + +
Sbjct: 115 --FADTSLKLMKDL 126
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 28.2 bits (64), Expect = 5.6
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 371 VLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
V+V + G G+A+A G +V++ NY R+ A+ VS +
Sbjct: 4 VVVTGASRGIGKAIALSLGKAGCKVLV---NYARSAKAAEEVSKQ 45
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A*
2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A*
2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 439
Score = 28.7 bits (65), Expect = 5.7
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHE 422
+ GK V++G G G + +RG + + L H L++
Sbjct: 1 ADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTR-MTPPGLDKLPEAVERHTGSLND 59
>2rjb_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.60A {Shigella flexneri}
Length = 455
Score = 28.4 bits (63), Expect = 6.0
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 463 VYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLE 516
++TPR +LL E + G + + F+++AL FR E+ R L E
Sbjct: 154 IFTPRCRQLLEEYEQQGGFNETQAQEFVQEALETFRWHQLATVDEETYRALHNE 207
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 28.3 bits (64), Expect = 6.1
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 371 VLV--GAGGAGRALAFGAKSRGARVI 394
VLV AGG G A AK GA+VI
Sbjct: 163 VLVLGAAGGIGTAAIQIAKGMGAKVI 188
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase,
rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol,
oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Length = 332
Score = 28.4 bits (64), Expect = 6.1
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 372 LVGAGGAGRALAFGA-KSRGARVI-IFNRNYERAKALADA 409
L+GA R GA ++ G V+ + + + ER A A
Sbjct: 5 LIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATE 44
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 28.0 bits (63), Expect = 6.4
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAV 410
GK + G G G A+A + GA V + ++ E L +
Sbjct: 8 RGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTI 53
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme,
tryptophan synthase beta like PLP-dependent enzymes
superfamily; HET: IT1; 2.00A {Escherichia coli} PDB:
4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Length = 398
Score = 28.2 bits (63), Expect = 6.5
Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 28/101 (27%)
Query: 341 AISAIEDALRERQGINGVASHTSPIAGKI-----FVLVGAGGAGRALAFGA--------- 386
AI L E+ ++ + I F G GR +A+ A
Sbjct: 81 GAYAIAQLLCEKYHLDIETLSFEHLKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVI 140
Query: 387 --------------KSRGARVIIFNRNYERAKALADAVSGE 413
+ GA I+ + NY+ L + +
Sbjct: 141 YMPKGSAQERVDAILNLGAECIVTDMNYDDTVRLTMQHAQQ 181
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 28.4 bits (64), Expect = 6.5
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 373 VGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALH 416
G G G LA+ +G RV++ E+A+ + L
Sbjct: 12 NGCGIGGAMLAYLLGRQGHRVVVV----EQARRERAINGADLLK 51
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 28.3 bits (64), Expect = 6.5
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 9/63 (14%)
Query: 357 GVASHT----SPIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYER---AKAL-A 407
H AG ++G G G A+ GA VI+ R + A+ + A
Sbjct: 169 ACCLHGVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGA 228
Query: 408 DAV 410
A
Sbjct: 229 TAT 231
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional
protein MNMC; structural genomics, PSI-biology; HET:
FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Length = 689
Score = 28.3 bits (62), Expect = 6.6
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 361 HTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIF 396
+ ++G G A + RGA V ++
Sbjct: 258 RPAATRCDDIAIIGGGIVSALTALALQRRGAVVTLY 293
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET:
NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2
c.2.1.1
Length = 371
Score = 28.3 bits (64), Expect = 6.8
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 366 AGKIFVLVGAGGAGRALAFGAKSRGARVII 395
FV GAG G + AK GA +II
Sbjct: 190 PASSFVTWGAGAVGLSALLAAKVCGASIII 219
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.30A {Geobacter metallireducens}
Length = 358
Score = 28.1 bits (63), Expect = 6.8
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 372 LVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALAD 408
++G G G + + G ++++ N +AL
Sbjct: 27 MIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALER 63
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc; HET: FDA; 2.51A
{Sinorhizobium meliloti}
Length = 417
Score = 28.2 bits (64), Expect = 6.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 371 VLVGAGGAGRALAFGAKSRGARVIIFNRN 399
V++GAG AG A A RG RV++ +
Sbjct: 31 VIIGAGAAGMMCAIEAGKRGRRVLVIDHA 59
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 28.2 bits (64), Expect = 6.9
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 371 VLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALA 407
+++GAG AG A G V +F + K +
Sbjct: 8 IIIGAGAAGLFCAAQLAKLGKSVTVF----DNGKKIG 40
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
protein structure initiative, P nysgrc; 2.35A
{Streptomyces avermitilis}
Length = 590
Score = 28.5 bits (64), Expect = 7.0
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 20 TEEMQASIEQAKVEGADLV---ELCI 42
E + + +GA LV E+ +
Sbjct: 23 AEAILRWTRHSAEQGAHLVAFPEMAL 48
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex,
NAD cofactor, regul SAM-dependent methylation reactions;
HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A*
3onf_A*
Length = 488
Score = 28.2 bits (63), Expect = 7.0
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 365 IAGKIFVLVGAGGAGRALAFGAKSRGARVII 395
IAGK+ V+ G G G+ A K GARVI+
Sbjct: 263 IAGKVAVVAGYGDVGKGCAAALKQAGARVIV 293
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 28.0 bits (63), Expect = 7.0
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 362 TSPIAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAV 410
+ ++GK + GA G G A+A A GA V I ++ L +
Sbjct: 1 SLTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTI 50
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 27.9 bits (63), Expect = 7.1
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 366 AGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKA-------LADAVSGEAL 415
GK+ LV AGG G A+ ++ GARV + +R A L +A + L
Sbjct: 27 EGKV-ALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAADLHLPGDLREAAYADGL 84
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 28.3 bits (64), Expect = 7.1
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 371 VLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALA 407
+++G G +G A GA GA V++ ++ L
Sbjct: 30 IVIGGGPSGLMAAIGAAEEGANVLLL----DKGNKLG 62
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A
{Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Length = 335
Score = 28.3 bits (64), Expect = 7.2
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 18/96 (18%)
Query: 368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEK 427
+ +L GAG G AL+ G V I+ ++ + ++S H + +
Sbjct: 2 IVSIL-GAGAMGSALSVPLVDNGNEVRIWGTEFD--TEILKSISAGREHPRLGVKLNGVE 58
Query: 428 GMILANASAIGMEPNSDQSPVPKEALKAYELVFDAV 463
+ ++ L+ E+V V
Sbjct: 59 -----------IFWPEQ----LEKCLENAEVVLLGV 79
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen
decarboxylase coproporphyrinogen, X-RAY crystallography,
lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1
PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A
1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A
1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Length = 367
Score = 28.3 bits (64), Expect = 7.4
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 151 TGADVMKLEIAVDSITDLAPVFEMLTHC------QVPLI 183
D+ +L ++L VF+ +T +VPLI
Sbjct: 114 EEQDLERLRDPEVVASELGYVFQAITLTRQRLAGRVPLI 152
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 28.5 bits (64), Expect = 7.5
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Query: 350 RERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKAL 406
E + ++VGAG +G A G V + + A+ +
Sbjct: 372 EEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLT----DTAEKI 424
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 28.0 bits (63), Expect = 7.7
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 358 VASH----TSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYER---AKAL-ADA 409
V H G +++GAG G AK+ GA V+ R+ R AK AD
Sbjct: 156 VGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADV 215
Query: 410 V 410
Sbjct: 216 T 216
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 27.9 bits (63), Expect = 7.7
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 367 GKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS 411
+ VLV G G G A+A + G +V + + + A
Sbjct: 15 SRS-VLVTGGNRGIGLAIAQRLAADGHKVAV---THRGSGAPKGLFG 57
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 28.4 bits (63), Expect = 8.0
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 353 QGINGVASHTSPIAGKIFVLVGAGGA--GRALAFGAKSRGARVIIFNRNYERAKA 405
G+ A GK ++ GAG G + G S GA+VI+ + R
Sbjct: 638 DGLEAAARSGLTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVT 692
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 28.0 bits (62), Expect = 8.1
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 361 HTSPIAGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADA 409
T + G ++ A G+ L G +++ R E+A L
Sbjct: 165 ETMRLEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKAQ 215
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 27.9 bits (63), Expect = 8.7
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAV 410
AG+ V+ GAG G GRA+A G GA V+ + R + K +AD +
Sbjct: 30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEI 74
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 27.8 bits (63), Expect = 8.7
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 362 TSPIAGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNY-ERAKALADAVSGEAL 415
T + K+ ++ GA G GRA+A GA + I + A+A + L
Sbjct: 2 TQRLKDKL-AVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVL 57
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG,
glycosylase, cytosine, hydrolase,lyase/DNA complex; HET:
8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A*
3f10_A* 3f0z_A
Length = 290
Score = 27.6 bits (61), Expect = 8.9
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 87 QVLRRALDLDVEFVEMDYEVASDPLMSEII 116
V DL ++ E+ E++ DPL+ + +
Sbjct: 73 NVWSEYFDLYRDYGEIKKELSRDPLLKKSV 102
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P
5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli}
PDB: 3ss9_X* 3r0x_A* 3r0z_A
Length = 442
Score = 27.8 bits (62), Expect = 9.5
Identities = 5/39 (12%), Positives = 15/39 (38%)
Query: 387 KSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFP 425
+S G V+ + ++Y A + + ++ +
Sbjct: 203 RSHGVTVVEYEQDYGVAVEEGRKAAQSDPNCFFIDDENS 241
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 27.5 bits (62), Expect = 9.7
Identities = 6/43 (13%), Positives = 12/43 (27%), Gaps = 1/43 (2%)
Query: 374 GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALH 416
G A G V + ++++ L A +
Sbjct: 9 VKHFGGMGSALRLSEAGHTVACHDESFKQKDELE-AFAETYPQ 50
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.391
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,060,824
Number of extensions: 525883
Number of successful extensions: 2209
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2064
Number of HSP's successfully gapped: 415
Length of query: 518
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 420
Effective length of database: 3,965,535
Effective search space: 1665524700
Effective search space used: 1665524700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.3 bits)