Citrus Sinensis ID: 010103

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------52
MAMKLSVFLLFISLISFFAPALSSVASNGVDYWCSKTPHPEPCKYFMQQNSKHFAVPKQKSEFRRMAMSLALDRALTAQNHNKWLGSKCRNHKEKVAWADCLKLYQDTINQLNHTLDSNTKCTDFDAQTWLSTALTNLETCRAGFVELGVPDYVLPLMSNNVTKLISNTLALRNASTVPETYKGGFPSWVKPGDRKLLQTSPVRPNLVVAQDGSGNYRTIKAALDAAAKRTGSGRFVIHVKRGVYKENLEIGNKMKNIMLVGDGLRYTIITGSRSVGGGFTTFNSATVAVTGDGFIARGITFRNTAGPQNHQAVALRAGSDLSVFYQCGFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARRPMDKQKNVVTAQGRTDPNQNTGISIHNSRVMAAPDLVPVLSKFKTFLGRPWKEYSRTVYMQTYLDSLVDPAGWLEWSGNFALNTLFYGEYKNIGPAASTSGRVKWRGYRVITSATEASKFTVGSFITGNSWLPATGVPFRSGL
ccHHHHHHHHHHHHHHHHccccccccccHHHHccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHccHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEccccccccccHHHHHHHHHccccccEEEEEEcccEEEEEEEEccccccEEEEEccccccEEEEccccccccccccccEEEEEcccEEEEccEEEEccccccccEEEEEEcccEEEEEEEEEEccccccccccccEEEEccEEEEEcEEEEcccEEEEcccEEEEEccccccccEEEEcccccccccccEEEEccEEEcccccccccccccccccccccccccEEEEEcccccccccccccccccccccccEEEEEEcccccccccccccccccccccccHHHHcccccccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHcccccccEEEcccccccEccHHHHHHHHccccccccEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEccccccccccHHHccEEEcccccEEEEEEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccccEEEEEEcccccccccEEEEEccEEEEccccHHHHHHccEEEEcccccccEEEEEccEEcccEcccccccccccccccccEEEEEccEcHHHccccccccccEEEcccHHHHHcccHHHHccHHHccHHHcccccccc
MAMKLSVFLLFISLISFFapalssvasngvdywcsktphpepckyfmqqnskhfavpkqKSEFRRMAMSLALDRALTAQNHnkwlgskcrnhkekVAWADCLKLYQDTINQLnhtldsntkctdfdaQTWLSTALTNLETCRAGfvelgvpdyvlplmsnNVTKLISNTLALrnastvpetykggfpswvkpgdrkllqtspvrpnlvvaqdgsgnYRTIKAALDAAAKRTGSGRFVIHVKRGVYKENLEIGNKMKNIMLVGDGLRYTIitgsrsvgggfttfnsatvavtgdgfiargitfrntagpqnhQAVALRAGSDLSVFYQCGFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMiyarrpmdkqknvvtaqgrtdpnqntgisihnsrvmaapdlvpVLSKFKtflgrpwkeysRTVYMQTYLDslvdpagwlewsgnfalntlfygeyknigpaastsgrvkwrgyrvitsateaskftvgsfitgnswlpatgvpfrsgl
MAMKLSVFLLFISLISFFAPALSSVASNGVDYWCSKTPHPEPCKYFMQQNSKHFAVPKQKSEFRRMAMSLALDRALTAQNHNKWLGSKCRNHKEKVAWADCLKLYQDTINQLNHTLDSNTKCTDFDAQTWLSTALTNLETCRAGFVELGVPDYVLPLMSNNVTKLISNTLALRNASTVPETYKGGFPSWVKPGDRKLLQTSPVRPnlvvaqdgsgnyRTIKAALDAaakrtgsgrfvihvkrgvykenleignkMKNIMLVGDGLRYTIITGSRSVGGGFTTFNSATVAVTGDGFIARGITFRNTAGPQNHQAVALRAGSDLSVFYQCGFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARRPMDKQKNVvtaqgrtdpnqntgisihnsrvMAAPDLVPVLSKFKTFLGRPWKEYSRTVYMQTYLDSLVDPAGWLEWSGNFALNTLFYGEYKNigpaastsgrvkwRGYRVITsateaskftvgsfitgnswlpatgvpfrsgl
MAMKlsvfllfislisffAPALSSVASNGVDYWCSKTPHPEPCKYFMQQNSKHFAVPKQKSEFRRMAMSLALDRALTAQNHNKWLGSKCRNHKEKVAWADCLKLYQDTINQLNHTLDSNTKCTDFDAQTWLSTALTNLETCRAGFVELGVPDYVLPLMSNNVTKLISNTLALRNASTVPETYKGGFPSWVKPGDRKLLQTSPVRPNLVVAQDGSGNYRTIKAALDAAAKRTGSGRFVIHVKRGVYKENLEIGNKMKNIMLVGDGLRYTIITGSRSVGGGFTTFNSATVAVTGDGFIARGITFRNTAGPQNHQAVALRAGSDLSVFYQCGFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARRPMDKQKNVVTAQGRTDPNQNTGISIHNSRVMAAPDLVPVLSKFKTFLGRPWKEYSRTVYMQTYLDSLVDPAGWLEWSGNFALNTLFYGEYKNIGPAASTSGRVKWRGYRVITSATEASKFTVGSFITGNSWLPATGVPFRSGL
****LSVFLLFISLISFFAPALSSVASNGVDYWCSKTPHPEPCKYFMQ******************AMSLALDRALTAQNHNKWLGSKCRNHKEKVAWADCLKLYQDTINQLNHTLDSNTKCTDFDAQTWLSTALTNLETCRAGFVELGVPDYVLPLMSNNVTKLISNTLALRNASTVPETYKGGFPSWVKPGDRKLLQTSPVRPNLVVAQDGSGNYRTIKAALDAAAKRTGSGRFVIHVKRGVYKENLEIGNKMKNIMLVGDGLRYTIITGSRSVGGGFTTFNSATVAVTGDGFIARGITFRNTAGPQNHQAVALRAGSDLSVFYQCGFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARR**********************ISIHNSRVMAAPDLVPVLSKFKTFLGRPWKEYSRTVYMQTYLDSLVDPAGWLEWSGNFALNTLFYGEYKNIGPAASTSGRVKWRGYRVITSATEASKFTVGSFITGNSWLPATGV******
*AMKLSVFLLFISLISFFAPA***********WCSKTPHPEPCK******************FRRMAMSLALDRALT*******************AWADCLKLYQDTINQLNHTL********FDAQTWLSTALTNLETCRAGFVEL************NVTKLISNTLALRN******************GDRKLLQTSPVRPNLVVAQDGSGNYRTIKAALDAAAKRTGSGRFVIHVKRGVYKENLEIGNKMKNIMLVGDGLRYTIITGSRSVGGGFTTFNSATVAVTGDGFIARGITFRNTAGPQNHQAVALRAGSDLSVFYQCGFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARRPMDKQKNVVTAQGRTDPNQNTGISIHNSRVMAAPDLVPVLSKFKTFLGRPWKEYSRTVYMQTYLDSLVDPAGWLEWSGNFALNTLFYGEYKNIGPAASTSGRVKWRGYRVITSATEASKFTVGSFITGNSWLPATGVPFRSGL
MAMKLSVFLLFISLISFFAPALSSVASNGVDYWCSKTPHPEPCKYFMQQNSKHFAVPKQKSEFRRMAMSLALDRALTAQNHNKWLGSKCRNHKEKVAWADCLKLYQDTINQLNHTLDSNTKCTDFDAQTWLSTALTNLETCRAGFVELGVPDYVLPLMSNNVTKLISNTLALRNASTVPETYKGGFPSWVKPGDRKLLQTSPVRPNLVVAQDGSGNYRTIKAALDAAAKRTGSGRFVIHVKRGVYKENLEIGNKMKNIMLVGDGLRYTIITGSRSVGGGFTTFNSATVAVTGDGFIARGITFRNTAGPQNHQAVALRAGSDLSVFYQCGFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARRPMDKQKNVVTAQGRTDPNQNTGISIHNSRVMAAPDLVPVLSKFKTFLGRPWKEYSRTVYMQTYLDSLVDPAGWLEWSGNFALNTLFYGEYKNIGPAASTSGRVKWRGYRVITSATEASKFTVGSFITGNSWLPATGVPFRSGL
*AMKLSVFLLFISLISFFAPALSSVASNGVDYWCSKTPHPEPCKYFMQQNSKHFAVPKQKSEFRRMAMSLALDRALTAQNHNKWLGSKCRNHKEKVAWADCLKLYQDTINQLNHTLDSNTKCTDFDAQTWLSTALTNLETCRAGFVELGVPDYVLPLMSNNVTKLISNTLALRNASTVPETYKGGFPSWVKPGDRKLLQTSPVRPNLVVAQDGSGNYRTIKAALDAAAKRTGSGRFVIHVKRGVYKENLEIGNKMKNIMLVGDGLRYTIITGSRSVGGGFTTFNSATVAVTGDGFIARGITFRNTAGPQNHQAVALRAGSDLSVFYQCGFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARRPMDKQKNVVTAQGRTDPNQNTGISIHNSRVMAAPDLVPVLSKFKTFLGRPWKEYSRTVYMQTYLDSLVDPAGWLEWSGNFALNTLFYGEYKNIGPAASTSGRVKWRGYRVITSATEASKFTVGSFITGNSWLPATGVPFR***
iiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAMKLSVFLLFISLISFFAPALSSVASNGVDYWCSKTPHPEPCKYFMQQNSKHFAVPKQKSEFRRMAMSLALDRALTAQNHNKWLGSKCRNHKEKVAWADCLKLYQDTINQLNHTLDSNTKCTDFDAQTWLSTALTNLETCRAGFVELGVPDYVLPLMSNNVTKLISNTLALRNASTVPETYKGGFPSWVKPGDRKLLQTSPVRPNLVVAQDGSGNYRTIKAALDAAAKRTGSGRFVIHVKRGVYKENLEIGNKMKNIMLVGDGLRYTIITGSRSVGGGFTTFNSATVAVTGDGFIARGITFRNTAGPQNHQAVALRAGSDLSVFYQCGFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARRPMDKQKNVVTAQGRTDPNQNTGISIHNSRVMAAPDLVPVLSKFKTFLGRPWKEYSRTVYMQTYLDSLVDPAGWLEWSGNFALNTLFYGEYKNIGPAASTSGRVKWRGYRVITSATEASKFTVGSFITGNSWLPATGVPFRSGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query518 2.2.26 [Sep-21-2011]
O04887510 Pectinesterase 2 OS=Citru no no 0.982 0.998 0.651 0.0
O22149511 Probable pectinesterase/p yes no 0.961 0.974 0.659 0.0
Q9FHN5536 Probable pectinesterase/p no no 0.951 0.919 0.566 1e-167
Q9FHN4540 Probable pectinesterase/p no no 0.942 0.903 0.562 1e-166
Q9STY3594 Probable pectinesterase/p no no 0.965 0.841 0.542 1e-165
P83948584 Pectinesterase 3 OS=Citru no no 0.920 0.816 0.513 1e-140
O04886584 Pectinesterase 1 OS=Citru no no 0.920 0.816 0.517 1e-138
Q43143583 Pectinesterase/pectineste N/A no 0.947 0.842 0.471 1e-128
O49298554 Probable pectinesterase/p no no 0.916 0.857 0.480 1e-126
O81320474 Putative pectinesterase/p no no 0.897 0.981 0.488 1e-126
>sp|O04887|PME2_CITSI Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1 Back     alignment and function desciption
 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/519 (65%), Positives = 411/519 (79%), Gaps = 10/519 (1%)

Query: 1   MAMKLSVFLLFISLISFFAPALS-SVASNGVDYWCSKTPHPEPCKYFMQQNSKHFAVPKQ 59
           MA+++   L+ +SL+ F     S   +   V  WC KTP+P+PC+YF+ Q +   ++ KQ
Sbjct: 1   MALRI---LITVSLVLFSLSHTSFGYSPEEVKSWCGKTPNPQPCEYFLTQKTDVTSI-KQ 56

Query: 60  KSEFRRMAMSLALDRALTAQNHNKWLGSKCRNHKEKVAWADCLKLYQDTINQLNHTLDSN 119
            ++F ++++ LAL+RA TAQ+    LGSKCRN +EK AW DC +LY+ T+ +LN T +S+
Sbjct: 57  DTDFYKISLQLALERATTAQSRTYTLGSKCRNEREKAAWEDCRELYELTVLKLNQTSNSS 116

Query: 120 TKCTDFDAQTWLSTALTNLETCRAGFVELGVPDYVLPLMSNNVTKLISNTLALRNASTVP 179
             CT  D QTWLSTALTNLETCRA   +LGVP+YVLPL+SNNVTKLISNTL+L       
Sbjct: 117 PGCTKVDKQTWLSTALTNLETCRASLEDLGVPEYVLPLLSNNVTKLISNTLSLNKVPYNE 176

Query: 180 ETYKGGFPSWVKPGDRKLLQTSPVRPNLVVAQDGSGNYRTIKAALDAAAKRTGSGRFVIH 239
            +YK GFP+WVKPGDRKLLQT+P R N+VVAQDGSGN +TI+ A+ AAA R G  R+VI+
Sbjct: 177 PSYKDGFPTWVKPGDRKLLQTTP-RANIVVAQDGSGNVKTIQEAV-AAASRAGGSRYVIY 234

Query: 240 VKRGVYKENLEIGNKMKNIMLVGDGLRYTIITGSRSVGGGFTTFNSATVAVTGDGFIARG 299
           +K G Y EN+E+  K+KNIM VGDG+  TIITGS+SVGGG TTF SATVAV GD FIAR 
Sbjct: 235 IKAGTYNENIEV--KLKNIMFVGDGIGKTIITGSKSVGGGATTFKSATVAVVGDNFIARD 292

Query: 300 ITFRNTAGPQNHQAVALRAGSDLSVFYQCGFEGYQDTLYVHSQRQFYKECYIYGTVDFIF 359
           IT RNTAGP NHQAVALR+GSDLSVFY+C FEGYQDTLYVHSQRQFY+EC IYGTVDFIF
Sbjct: 293 ITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIF 352

Query: 360 GNAAVVLQNCMIYARRPMDKQKNVVTAQGRTDPNQNTGISIHNSRVMAAPDLVPVLSKFK 419
           GNAAVVLQNC I+AR+P ++  N +TAQGRTDPNQ+TGI IHN RV AA DL PV S  K
Sbjct: 353 GNAAVVLQNCNIFARKPPNR-TNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVK 411

Query: 420 TFLGRPWKEYSRTVYMQTYLDSLVDPAGWLEWSGNFALNTLFYGEYKNIGPAASTSGRVK 479
           TFLGRPWK+YSRTVY++T+LDSL++PAGW+EWSG+FALNTL+Y EY N GP +ST+ RVK
Sbjct: 412 TFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVK 471

Query: 480 WRGYRVITSATEASKFTVGSFITGNSWLPATGVPFRSGL 518
           WRGY V+TS ++ S+FTVG+FI GNSWLPAT VPF SGL
Sbjct: 472 WRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 510
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Citrus sinensis (taxid: 2711)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|O22149|PME17_ARATH Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2 Back     alignment and function description
>sp|Q9FHN5|PME59_ARATH Probable pectinesterase/pectinesterase inhibitor 59 OS=Arabidopsis thaliana GN=PME59 PE=2 SV=1 Back     alignment and function description
>sp|Q9FHN4|PME60_ARATH Probable pectinesterase/pectinesterase inhibitor 60 OS=Arabidopsis thaliana GN=PME60 PE=2 SV=1 Back     alignment and function description
>sp|Q9STY3|PME33_ARATH Probable pectinesterase/pectinesterase inhibitor 33 OS=Arabidopsis thaliana GN=PME33 PE=2 SV=1 Back     alignment and function description
>sp|P83948|PME3_CITSI Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1 Back     alignment and function description
>sp|O04886|PME1_CITSI Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1 Back     alignment and function description
>sp|Q43143|PMEU1_SOLLC Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1 Back     alignment and function description
>sp|O49298|PME6_ARATH Probable pectinesterase/pectinesterase inhibitor 6 OS=Arabidopsis thaliana GN=PME6 PE=2 SV=1 Back     alignment and function description
>sp|O81320|PME38_ARATH Putative pectinesterase/pectinesterase inhibitor 38 OS=Arabidopsis thaliana GN=PME38 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query518
224136730517 predicted protein [Populus trichocarpa] 0.992 0.994 0.825 0.0
359490196520 PREDICTED: pectinesterase 2-like isoform 1.0 0.996 0.801 0.0
224120258520 predicted protein [Populus trichocarpa] 0.992 0.988 0.793 0.0
225466087494 PREDICTED: pectinesterase 2-like isoform 0.942 0.987 0.828 0.0
255539751455 Pectinesterase-2 precursor, putative [Ri 0.874 0.995 0.861 0.0
449499686 742 PREDICTED: pectinesterase 2-like [Cucumi 0.996 0.695 0.715 0.0
449460814526 PREDICTED: pectinesterase 2-like [Cucumi 0.996 0.980 0.715 0.0
225453983513 PREDICTED: pectinesterase 2 [Vitis vinif 0.984 0.994 0.686 0.0
449451974520 PREDICTED: pectinesterase 2-like [Cucumi 0.988 0.984 0.667 0.0
359479289512 PREDICTED: pectinesterase 2-like [Vitis 0.947 0.958 0.686 0.0
>gi|224136730|ref|XP_002322401.1| predicted protein [Populus trichocarpa] gi|222869397|gb|EEF06528.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  899 bits (2323), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/521 (82%), Positives = 472/521 (90%), Gaps = 7/521 (1%)

Query: 1   MAMKLSVFLLFISLISFFAPALSSVASNG-VDYWCSKTPHPEPCKYFMQQNSKHFAVPKQ 59
           MA KL + LLF+ L S  +   SS+ASN  +DYWCSKTP+PEPCKYFM+QN KHF VPKQ
Sbjct: 1   MATKLCLSLLFMCLCSLLS---SSIASNDQIDYWCSKTPNPEPCKYFMKQNPKHF-VPKQ 56

Query: 60  KSEFRRMAMSLALDRALTAQNHNKWLGSKCRNHKEKVAWADCLKLYQDTINQLNHTLDSN 119
           KS+FR+MA+ LA+ RAL AQNHNKWLG KCRN KEK AWADCLKLY+DTI +LNHT+DSN
Sbjct: 57  KSDFRKMAIELAVQRALNAQNHNKWLGPKCRNEKEKAAWADCLKLYEDTIAELNHTIDSN 116

Query: 120 TKCTDFDAQTWLSTALTNLETCRAGFVELGVPDYVLPLMSNNVTKLISNTLALRN--AST 177
           TKCT FDAQTWLSTALTNLETC+AGF +LGV D+VLPLMSNNV+KLI NTLAL++  +ST
Sbjct: 117 TKCTQFDAQTWLSTALTNLETCKAGFKDLGVSDFVLPLMSNNVSKLIRNTLALKDNASST 176

Query: 178 VPETYKGGFPSWVKPGDRKLLQTSPVRPNLVVAQDGSGNYRTIKAALDAAAKRTGSGRFV 237
           +P+TYK GFPSWVK GDRKLLQTS   PNLVVAQDGSGN+RTIKAALDAAAKR+GS RFV
Sbjct: 177 LPQTYKDGFPSWVKAGDRKLLQTSSPSPNLVVAQDGSGNHRTIKAALDAAAKRSGSRRFV 236

Query: 238 IHVKRGVYKENLEIGNKMKNIMLVGDGLRYTIITGSRSVGGGFTTFNSATVAVTGDGFIA 297
           I +K GVY+ENL+IG K+KNIMLVGDGLR TIITGSRSVGGGFTTFNSATVAVTG+GFIA
Sbjct: 237 IRIKSGVYRENLDIGKKLKNIMLVGDGLRNTIITGSRSVGGGFTTFNSATVAVTGEGFIA 296

Query: 298 RGITFRNTAGPQNHQAVALRAGSDLSVFYQCGFEGYQDTLYVHSQRQFYKECYIYGTVDF 357
           RGITFRNTAGPQNHQAVALR+GSDLSVFY+CGFEGYQDTLYVHSQRQFYKECYIYGTVDF
Sbjct: 297 RGITFRNTAGPQNHQAVALRSGSDLSVFYRCGFEGYQDTLYVHSQRQFYKECYIYGTVDF 356

Query: 358 IFGNAAVVLQNCMIYARRPMDKQKNVVTAQGRTDPNQNTGISIHNSRVMAAPDLVPVLSK 417
           IFGNAAV+LQNCMIYARRPMDKQKNVVTAQGRTDPNQNTGISIHNSRVMA+ DL PVLS 
Sbjct: 357 IFGNAAVILQNCMIYARRPMDKQKNVVTAQGRTDPNQNTGISIHNSRVMASSDLRPVLSS 416

Query: 418 FKTFLGRPWKEYSRTVYMQTYLDSLVDPAGWLEWSGNFALNTLFYGEYKNIGPAASTSGR 477
           FKT+LGRPWKEYSRTV++QTYLDSLVDPAGWLEW GNFALNTL+YGEY+N GP AST GR
Sbjct: 417 FKTYLGRPWKEYSRTVFLQTYLDSLVDPAGWLEWDGNFALNTLYYGEYRNSGPGASTRGR 476

Query: 478 VKWRGYRVITSATEASKFTVGSFITGNSWLPATGVPFRSGL 518
           VKWRGYRVITS+TEAS+FTV +FI G SWLPATGVPF  GL
Sbjct: 477 VKWRGYRVITSSTEASRFTVANFIAGRSWLPATGVPFYPGL 517

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359490196|ref|XP_003634048.1| PREDICTED: pectinesterase 2-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224120258|ref|XP_002318285.1| predicted protein [Populus trichocarpa] gi|222858958|gb|EEE96505.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225466087|ref|XP_002265104.1| PREDICTED: pectinesterase 2-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255539751|ref|XP_002510940.1| Pectinesterase-2 precursor, putative [Ricinus communis] gi|223550055|gb|EEF51542.1| Pectinesterase-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449499686|ref|XP_004160886.1| PREDICTED: pectinesterase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449460814|ref|XP_004148139.1| PREDICTED: pectinesterase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225453983|ref|XP_002280446.1| PREDICTED: pectinesterase 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449451974|ref|XP_004143735.1| PREDICTED: pectinesterase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359479289|ref|XP_002265740.2| PREDICTED: pectinesterase 2-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query518
TAIR|locus:2050941511 AT2G45220 [Arabidopsis thalian 0.945 0.958 0.666 1.6e-180
TAIR|locus:2153112536 AT5G51490 [Arabidopsis thalian 0.949 0.917 0.571 2.2e-153
TAIR|locus:2153127540 AT5G51500 [Arabidopsis thalian 0.955 0.916 0.565 5.2e-152
TAIR|locus:2099565594 AT3G47400 [Arabidopsis thalian 0.793 0.691 0.583 9.1e-132
TAIR|locus:2201230554 AT1G23200 [Arabidopsis thalian 0.625 0.584 0.586 3.2e-121
TAIR|locus:2126941474 PME38 "pectin methylesterase 3 0.897 0.981 0.488 1.4e-117
TAIR|locus:2091000592 PME3 "pectin methylesterase 3" 0.642 0.562 0.610 5.3e-117
TAIR|locus:2082951598 AT3G49220 [Arabidopsis thalian 0.640 0.555 0.571 1.3e-115
TAIR|locus:2197056587 PME2 "pectin methylesterase 2" 0.642 0.567 0.604 2.3e-112
TAIR|locus:2101836519 AT3G60730 [Arabidopsis thalian 0.638 0.637 0.569 3.4e-111
TAIR|locus:2050941 AT2G45220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1752 (621.8 bits), Expect = 1.6e-180, P = 1.6e-180
 Identities = 335/503 (66%), Positives = 399/503 (79%)

Query:    19 APALSSVASNGVDYWCSKTPHPEPCKYFMQQNSKHFAVPKQKSEFRRMAMSLALDRALTA 78
             A  +S      V  WCS+TP+P+PC+YF+  NS +  + K +SEF +++M L LDRA+ A
Sbjct:    19 ASTVSGYNQKDVKAWCSQTPNPKPCEYFLTHNSNNEPI-KSESEFLKISMKLVLDRAILA 77

Query:    79 QNHNKWLGSKCRNHKEKVAWADCLKLYQDTINQLNHTLDSNTKCTDFDAQTWLSTALTNL 138
             + H   LG KCR+ +EK AW DC+KLY  T++++N T+D N KC+  DAQTWLSTALTNL
Sbjct:    78 KTHAFTLGPKCRDTREKAAWEDCIKLYDLTVSKINETMDPNVKCSKLDAQTWLSTALTNL 137

Query:   139 ETCRAGFVELGVPDYVLPLMSNNVTKLISNTLALRNAS---TVPETYKGGFPSWVKPGDR 195
             +TCRAGF+ELGV D VLPLMSNNV+ L+ NTLA+       T PE  K GFPSWVKPGDR
Sbjct:   138 DTCRAGFLELGVTDIVLPLMSNNVSNLLCNTLAINKVPFNYTPPE--KDGFPSWVKPGDR 195

Query:   196 KLLQTSPVRPNLVVAQDGSGNYRTIKAALDAAAKRTGSGRFVIHVKRGVYKENLEIGNKM 255
             KLLQ+S  + N VVA+DGSGN++TIK A+DAA+   GSGRFVI+VK+GVY ENLEI  + 
Sbjct:   196 KLLQSSTPKDNAVVAKDGSGNFKTIKEAIDAAS---GSGRFVIYVKQGVYSENLEI--RK 250

Query:   256 KNIMLVGDGLRYTIITGSRSVGGGFTTFNSATVAVTGDGFIARGITFRNTAGPQNHQAVA 315
             KN+ML GDG+  TIITGS+SVGGG TTFNSATVA  GDGFIARGITFRNTAG  N QAVA
Sbjct:   251 KNVMLRGDGIGKTIITGSKSVGGGTTTFNSATVAAVGDGFIARGITFRNTAGASNEQAVA 310

Query:   316 LRAGSDLSVFYQCGFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARR 375
             LR+GSDLSVFYQC FE YQDTLYVHS RQFY++C +YGTVDFIFGNAA VLQNC I+ARR
Sbjct:   311 LRSGSDLSVFYQCSFEAYQDTLYVHSNRQFYRDCDVYGTVDFIFGNAAAVLQNCNIFARR 370

Query:   376 PMDKQKNVVTAQGRTDPNQNTGISIHNSRVMAAPDLVPVLSKFKTFLGRPWKEYSRTVYM 435
             P  K  N +TAQGR+DPNQNTGI IHNSRV AA DL PVL   KT+LGRPW++YSRTV+M
Sbjct:   371 PRSKT-NTITAQGRSDPNQNTGIIIHNSRVTAASDLRPVLGSTKTYLGRPWRQYSRTVFM 429

Query:   436 QTYLDSLVDPAGWLEWSGNFALNTLFYGEYKNIGPAASTSGRVKWRGYRVITSATEASKF 495
             +T LDSL+DP GWLEW GNFAL TLFY E++N GP ASTSGRV W G+RV+ SA+EASKF
Sbjct:   430 KTSLDSLIDPRGWLEWDGNFALKTLFYAEFQNTGPGASTSGRVTWPGFRVLGSASEASKF 489

Query:   496 TVGSFITGNSWLPATGVPFRSGL 518
             TVG+F+ G SW+P++ VPF SGL
Sbjct:   490 TVGTFLAGGSWIPSS-VPFTSGL 511
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
GO:0016020 "membrane" evidence=IDA
TAIR|locus:2153112 AT5G51490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153127 AT5G51500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099565 AT3G47400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201230 AT1G23200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126941 PME38 "pectin methylesterase 38" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091000 PME3 "pectin methylesterase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082951 AT3G49220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197056 PME2 "pectin methylesterase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101836 AT3G60730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O22149PME17_ARATH3, ., 1, ., 1, ., 1, 10.65940.96130.9745yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.991
3rd Layer3.1.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00151059
hypothetical protein (517 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.41450001
hypothetical protein (176 aa)
  •     0.447

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query518
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 0.0
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 0.0
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 0.0
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 1e-180
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-176
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 1e-175
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-174
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 1e-168
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 1e-167
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 1e-167
PLN02314586 PLN02314, PLN02314, pectinesterase 1e-166
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-157
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-156
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-155
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 1e-155
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 1e-144
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 1e-136
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 1e-132
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-130
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 1e-123
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 1e-121
PLN02197588 PLN02197, PLN02197, pectinesterase 3e-88
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 1e-69
PLN02432293 PLN02432, PLN02432, putative pectinesterase 2e-62
PLN02773317 PLN02773, PLN02773, pectinesterase 6e-62
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 3e-61
PLN02497331 PLN02497, PLN02497, probable pectinesterase 4e-55
PLN02304379 PLN02304, PLN02304, probable pectinesterase 3e-54
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 8e-52
PLN02671359 PLN02671, PLN02671, pectinesterase 9e-51
PLN02634359 PLN02634, PLN02634, probable pectinesterase 5e-49
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 5e-41
PLN02176340 PLN02176, PLN02176, putative pectinesterase 3e-35
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 3e-29
TIGR01614178 TIGR01614, PME_inhib, pectinesterase inhibitor dom 2e-25
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 2e-23
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 2e-21
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
 Score =  616 bits (1589), Expect = 0.0
 Identities = 302/542 (55%), Positives = 381/542 (70%), Gaps = 30/542 (5%)

Query: 1   MAMKLS-VFLLFISLISFFAPALSSVA---SNGVDYWCSKTPHPEPCK-YFMQQNSKHFA 55
           M  K+S + L  + L+      L++VA   S  +D WC KTP+P+PCK YF   N   F 
Sbjct: 4   MMQKISFLSLHLLLLLLLCVHPLTTVADGNSTDIDGWCDKTPYPDPCKCYFKNHNG--FR 61

Query: 56  VPKQKSEFRRMAMSLALDRALTAQNHNKWLGSKCRNHKEKVAWADCLKLYQDTINQLNHT 115
            P Q SEFR M +  A+DRA++A++     G  C + K++   ADC+ LY DTI QLN T
Sbjct: 62  QPTQISEFRVMLVEAAMDRAISARDELTNSGKNCTDFKKQAVLADCIDLYGDTIMQLNRT 121

Query: 116 LD-------SNTKCTDFDAQTWLSTALTNLETCRAGFVELGVPDYVLPLMSNN-VTKLIS 167
           L        +  +CTDFDAQTWLSTALTN ETCR G  +L V D++ P++SN  ++ LIS
Sbjct: 122 LQGVSPKAGAAKRCTDFDAQTWLSTALTNTETCRRGSSDLNVSDFITPIVSNTKISHLIS 181

Query: 168 NTLAL--------RNASTVPETYKGGFPSWVKPGDRKLLQTSPVRPNLVVAQDGSGNYRT 219
           N LA+         N +T     + GFP+WV   DR+LL+   VR NLVVA+DGSG++ T
Sbjct: 182 NCLAVNGALLTAGNNGNTTAN--QKGFPTWVSRKDRRLLRL--VRANLVVAKDGSGHFNT 237

Query: 220 IKAALDAAAKR-TGSGRFVIHVKRGVYKENLEIGNKMKNIMLVGDGLRYTIITGSRSVGG 278
           ++AA+D A +R   SGRFVI+VKRG+Y+EN+ +     +IMLVGDG+R TIITG RSV G
Sbjct: 238 VQAAIDVAGRRKVTSGRFVIYVKRGIYQENINVRLNNDDIMLVGDGMRSTIITGGRSVKG 297

Query: 279 GFTTFNSATVAVTGDGFIARGITFRNTAGPQNHQAVALRAGSDLSVFYQCGFEGYQDTLY 338
           G+TT+NSAT  + G  FIA+GITFRNTAGP   QAVALR+ SDLS+FY+C  EGYQDTL 
Sbjct: 298 GYTTYNSATAGIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLM 357

Query: 339 VHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARRPMDKQKNVVTAQGRTDPNQNTGI 398
           VHSQRQFY+ECYIYGTVDFIFGNAA V QNC+I  RRP+  Q NV+TAQGR DP QNTGI
Sbjct: 358 VHSQRQFYRECYIYGTVDFIFGNAAAVFQNCIILPRRPLKGQANVITAQGRADPFQNTGI 417

Query: 399 SIHNSRVMAAPDLVPVLSKFKTFLGRPWKEYSRTVYMQTYLDSLVDPAGWLEW--SGNFA 456
           SIHNSR++ APDL PV+   KT++GRPW ++SRTV +QTYLD++V P GW  W     F 
Sbjct: 418 SIHNSRILPAPDLKPVVRTVKTYMGRPWMKFSRTVVLQTYLDNVVSPVGWSPWIEGSVFG 477

Query: 457 LNTLFYGEYKNIGPAASTSGRVKWRGYRVITSATEASKFTVGSFITGNSWLPATGVPFRS 516
           L+TLFY EYKN GPA+ST  RV+W+G+ V+  A++AS FTVG FI G +WLP TG+PF S
Sbjct: 478 LDTLFYAEYKNTGPASSTRWRVRWKGFHVLGRASDASAFTVGKFIAGTAWLPGTGIPFTS 537

Query: 517 GL 518
           GL
Sbjct: 538 GL 539

Length = 539
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 518
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02671359 pectinesterase 100.0
PLN02497331 probable pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02304379 probable pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02773317 pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02480343 Probable pectinesterase 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 99.96
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 99.94
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 99.92
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.42
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.72
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.72
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.56
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.3
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 98.08
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.39
KOG1777 625 consensus Putative Zn-finger protein [General func 97.12
PLN02218431 polygalacturonase ADPG 96.9
PLN02480343 Probable pectinesterase 96.89
PRK10531422 acyl-CoA thioesterase; Provisional 96.81
PLN02682369 pectinesterase family protein 96.76
PLN02432293 putative pectinesterase 96.67
PLN03010409 polygalacturonase 96.64
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.52
PLN02773317 pectinesterase 96.52
PLN03003456 Probable polygalacturonase At3g15720 96.5
PLN02634359 probable pectinesterase 96.36
PLN02793443 Probable polygalacturonase 96.35
PLN02665366 pectinesterase family protein 96.27
PLN02176340 putative pectinesterase 96.09
PLN02671359 pectinesterase 95.86
PLN02304379 probable pectinesterase 95.85
smart00656190 Amb_all Amb_all domain. 95.77
PLN02497331 probable pectinesterase 95.7
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 95.69
PLN02916502 pectinesterase family protein 95.66
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 95.58
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 95.55
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 95.54
PLN02506537 putative pectinesterase/pectinesterase inhibitor 95.47
PLN02416541 probable pectinesterase/pectinesterase inhibitor 95.45
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 95.45
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 95.45
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 95.44
PLN02197588 pectinesterase 95.43
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 95.38
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 95.3
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 95.26
PLN02170529 probable pectinesterase/pectinesterase inhibitor 95.25
PLN02201520 probable pectinesterase/pectinesterase inhibitor 95.07
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 94.98
PLN02301548 pectinesterase/pectinesterase inhibitor 94.94
PLN02484587 probable pectinesterase/pectinesterase inhibitor 94.78
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 94.76
PLN02468565 putative pectinesterase/pectinesterase inhibitor 94.74
PLN02155394 polygalacturonase 94.65
PLN02314586 pectinesterase 94.63
PLN02488509 probable pectinesterase/pectinesterase inhibitor 94.56
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 94.46
PLN02313587 Pectinesterase/pectinesterase inhibitor 94.31
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 94.03
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 93.48
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 93.37
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 92.73
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 91.69
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 91.55
PLN02188404 polygalacturonase/glycoside hydrolase family prote 88.85
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 87.93
PLN02218431 polygalacturonase ADPG 85.54
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 85.28
PLN02793443 Probable polygalacturonase 84.85
smart00722146 CASH Domain present in carbohydrate binding protei 83.75
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=4.1e-129  Score=1051.10  Aligned_cols=487  Identities=48%  Similarity=0.825  Sum_probs=447.3

Q ss_pred             hhhhhccCCCCCccchHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHH
Q 010103           28 NGVDYWCSKTPHPEPCKYFMQQNSKHFAVPKQKSEFRRMAMSLALDRALTAQNHNKWLGSKCRNHKEKVAWADCLKLYQD  107 (518)
Q Consensus        28 ~~I~~~C~~T~yp~lC~~sL~~~~~s~~~~~d~~~La~iai~~a~~~a~~t~~~i~~l~~~~~~~~~~~aL~dC~e~y~~  107 (518)
                      ..|+.+|+.|+||++|+++|+++|.+  ...+|++|++++++++++++.++......+....++++.+.||+||+|+|++
T Consensus        74 ~~Iks~C~~T~YP~lC~sSLs~~p~s--~~~~p~~L~~~slnvtl~~~~~a~~~s~~l~~~~~~~r~k~AL~DClELldd  151 (587)
T PLN02484         74 QAISKTCSKTRFPNLCVDSLLDFPGS--LTASESDLIHISFNMTLQHFSKALYLSSTISYVQMPPRVRSAYDSCLELLDD  151 (587)
T ss_pred             HHHHHhccCCCChHHHHHHHhhcccc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHH
Confidence            58999999999999999999998875  5679999999999999999999877766554456788999999999999999


Q ss_pred             HHHHHHHhhhhccC----CChhhHHHHHHHhhcchhhhhhccccCC---CCCccccccchhhhhhhhhhhhcccCCCCC-
Q 010103          108 TINQLNHTLDSNTK----CTDFDAQTWLSTALTNLETCRAGFVELG---VPDYVLPLMSNNVTKLISNTLALRNASTVP-  179 (518)
Q Consensus       108 av~~L~~a~~~l~~----~~~~d~~twLSAAlt~~~TC~DgF~~~~---~~~~~~~~~~~~~~~L~SnaLai~~~~~~~-  179 (518)
                      ++++|++++++|..    ..++|++||||||||+++||+|||++.+   .++ .|...+.++.||+||||||++.+... 
T Consensus       152 Aid~L~~Sl~~l~~~~~~~~~~DvkTWLSAALTnq~TClDGF~e~~~~~vk~-~m~~~l~~l~~LtSNALAIi~~~~~~~  230 (587)
T PLN02484        152 SVDALSRALSSVVPSSGGGSPQDVVTWLSAALTNHDTCTEGFDGVNGGEVKD-QMTGALKDLSELVSNCLAIFSASNGGD  230 (587)
T ss_pred             HHHHHHHHHHHHhccccccchHHHHhHHHHHhccHhhHHHHhhcccccchHH-HHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            99999999998864    4689999999999999999999998653   223 35566899999999999998887641 


Q ss_pred             ------C----CC----CCCCCCccCCCCCccccCCC--CCCcEEEcCCCCCCcccHHHHHHHhhccCCCceEEEEEecc
Q 010103          180 ------E----TY----KGGFPSWVKPGDRKLLQTSP--VRPNLVVAQDGSGNYRTIKAALDAAAKRTGSGRFVIHVKRG  243 (518)
Q Consensus       180 ------~----~~----~~~~p~w~~~~~~~~l~~~~--~~~~~~V~~~g~g~f~TIq~Ai~aa~~~~~~~~~~I~I~~G  243 (518)
                            +    -.    .++||+|++..+|+||+...  .+.+++|++||+|+|+|||+||+++|++ +.+|++|+|+||
T Consensus       231 ~~~~~~~~~r~l~~~~~~~~~P~W~~~~dr~ll~~~~~~~~~~~vVa~dGsG~f~TIq~Ai~a~P~~-~~~r~vI~Ik~G  309 (587)
T PLN02484        231 FSGVPIQNRRRLLTEEEDISFPRWLGRRERELLGMPVSAIQADIIVSKDGNGTFKTISEAIKKAPEH-SSRRTIIYVKAG  309 (587)
T ss_pred             ccccccccccccccccccccCCCCcChhhHHHhhcccccCCceEEECCCCCCCcccHHHHHHhcccc-CCCcEEEEEeCC
Confidence                  0    01    24899999999999998754  6789999999999999999999999997 688999999999


Q ss_pred             eeee-eeeecccccCeEEEeCCCcceEEEcCcccCCCcccccceeEEEEcCcEEEEcceeecCCCCCCCceEEEEecCCe
Q 010103          244 VYKE-NLEIGNKMKNIMLVGDGLRYTIITGSRSVGGGFTTFNSATVAVTGDGFIARGITFRNTAGPQNHQAVALRAGSDL  322 (518)
Q Consensus       244 ~Y~E-~v~i~~~~~~itl~G~~~~~t~I~~~~~~~~~~~t~~sat~~v~~~~~~~~~lti~N~~g~~~~qavAl~~~~d~  322 (518)
                      +|+| +|.|++.|+||+|+|+|.++|+|+++++..++++|+.+|||.|.+++|+++||||+|++|+..+|||||++.+|+
T Consensus       310 ~Y~E~~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~  389 (587)
T PLN02484        310 RYEENNLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADH  389 (587)
T ss_pred             EEEEEEEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCc
Confidence            9999 599999999999999999999999999887888999999999999999999999999999988999999999999


Q ss_pred             eEEEeceeecccceeeecccceeeeecEEEccceeeeccceEEEEeeEEEEecCCCCCceEEEecCCCCCCCCeeEEEEe
Q 010103          323 SVFYQCGFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARRPMDKQKNVVTAQGRTDPNQNTGISIHN  402 (518)
Q Consensus       323 ~~~~~c~~~g~QdTl~~~~~r~~~~~c~I~G~vDfIfG~~~a~f~~c~i~~~~~~~~~~~~itA~~~~~~~~~~G~vf~~  402 (518)
                      ++||||+|+|||||||++.+||||++|+|+|+||||||+|+++||+|+|+++++..++.|+||||+|+++++++||||+|
T Consensus       390 ~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~  469 (587)
T PLN02484        390 AVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHA  469 (587)
T ss_pred             EEEEeeeEeccCcccccCCCcEEEEecEEEeccceecccceeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEe
Confidence            99999999999999999999999999999999999999999999999999998776778999999999999999999999


Q ss_pred             eEEeeCCCCCcccccceEEeeccccccCcEEEEeecCCCccCCCCccCCCCCCCCcceEEEEeeccCCCCCCCCcccccC
Q 010103          403 SRVMAAPDLVPVLSKFKTFLGRPWKEYSRTVYMQTYLDSLVDPAGWLEWSGNFALNTLFYGEYKNIGPAASTSGRVKWRG  482 (518)
Q Consensus       403 c~i~~~~~~~~~~~~~~~yLGRpW~~~~~~v~~~t~~~~~I~p~Gw~~w~~~~~~~~~~f~Ey~~~Gpga~~~~r~~w~~  482 (518)
                      |+|++++++.+..+..++||||||++|+|||||+|+|+++|+|+||.+|++++++++++|+||+|+|||+++++||+|++
T Consensus       470 c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~i~~~I~p~GW~~W~~~~~~~t~~y~Ey~n~GpGa~~~~Rv~w~~  549 (587)
T PLN02484        470 CRILAASDLAASKGSFPTYLGRPWKLYSRTVYMMSYMGDHIHPRGWLEWNTTFALDTLYYGEYMNYGPGSGVGQRVKWPG  549 (587)
T ss_pred             eEEecCCccccccCccceeccCCCCCCceEEEEecccCCeEcccccCCCCCCCCCCceEEEEeccccCCCCcCCCccCcc
Confidence            99999877554445567899999999999999999999999999999999888899999999999999999999999999


Q ss_pred             ccccCCHHHHhcccccccccCCCCccCCCCCCCCCC
Q 010103          483 YRVITSATEASKFTVGSFITGNSWLPATGVPFRSGL  518 (518)
Q Consensus       483 ~~~~~~~~ea~~~~~~~~~~g~~W~p~~~~~~~~~~  518 (518)
                      ++++++++||++|+..+||+|++|+|.++|||.+||
T Consensus       550 ~~~~~~~~ea~~ft~~~fi~g~~W~~~~~vp~~~gl  585 (587)
T PLN02484        550 YRVITSTVEASKFTVAQFIYGSSWLPSTGVSFLAGL  585 (587)
T ss_pred             ccccCCHHHHHhhhHHhhcCCCCcCCCCCCCcccCC
Confidence            988888899999999999999999999999999986

>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query518
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 1e-117
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 1e-105
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 3e-25
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 3e-25
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 4e-24
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 2e-18
3grh_A422 Crystal Structure Of Escherichia Coli Ybhc Length = 3e-05
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  418 bits (1074), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/319 (63%), Positives = 243/319 (76%), Gaps = 1/319 (0%)
Query: 200 TSPVRPNLVVAQDGSGNYRTIKAALDAAAKRTGSGRFVIHVKRGVYKENLEIGNKMKNIM 259
           +S V PN+VVA DGSG+Y+T+  A+ AAA      R+VI +K GVY+EN+++  K KNIM
Sbjct: 2   SSTVGPNVVVAADGSGDYKTVSEAV-AAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIM 60
Query: 260 LVGDGLRYTIITGSRSVGGGFTTFNSATVAVTGDGFIARGITFRNTAGPQNHQAVALRAG 319
            +GDG   TIIT S++V  G TTFNSATVA  G GF+AR ITF+NTAG   HQAVALR G
Sbjct: 61  FLGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVG 120
Query: 320 SDLSVFYQCGFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARRPMDK 379
           SDLS FY+C    YQD+LYVHS RQF+  C+I GTVDFIFGNAAVVLQ+C I+ARRP   
Sbjct: 121 SDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSG 180
Query: 380 QKNVVTAQGRTDPNQNTGISIHNSRVMAAPDLVPVLSKFKTFLGRPWKEYSRTVYMQTYL 439
           QKN+VTAQGRTDPNQNTGI I  SR+ A  DL PV S F T+LGRPWKEYSRTV MQ+ +
Sbjct: 181 QKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSI 240
Query: 440 DSLVDPAGWLEWSGNFALNTLFYGEYKNIGPAASTSGRVKWRGYRVITSATEASKFTVGS 499
            ++++PAGW  W GNFAL+TL+YGEY+N G  A+TSGRV W+G++VITS+TEA  FT GS
Sbjct: 241 TNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGS 300
Query: 500 FITGNSWLPATGVPFRSGL 518
           FI G SWL AT  PF  GL
Sbjct: 301 FIAGGSWLKATTFPFSLGL 319
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure
>pdb|3GRH|A Chain A, Crystal Structure Of Escherichia Coli Ybhc Length = 422 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query518
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 0.0
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 0.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-138
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-136
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 1e-115
1x91_A153 Invertase/pectin methylesterase inhibitor family p 7e-36
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 6e-34
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 5e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  518 bits (1335), Expect = 0.0
 Identities = 202/320 (63%), Positives = 244/320 (76%), Gaps = 1/320 (0%)

Query: 199 QTSPVRPNLVVAQDGSGNYRTIKAALDAAAKRTGSGRFVIHVKRGVYKENLEIGNKMKNI 258
           ++S V PN+VVA DGSG+Y+T+  A+ AA +     R+VI +K GVY+EN+++  K KNI
Sbjct: 1   ESSTVGPNVVVAADGSGDYKTVSEAVAAAPE-DSKTRYVIRIKAGVYRENVDVPKKKKNI 59

Query: 259 MLVGDGLRYTIITGSRSVGGGFTTFNSATVAVTGDGFIARGITFRNTAGPQNHQAVALRA 318
           M +GDG   TIIT S++V  G TTFNSATVA  G GF+AR ITF+NTAG   HQAVALR 
Sbjct: 60  MFLGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRV 119

Query: 319 GSDLSVFYQCGFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARRPMD 378
           GSDLS FY+C    YQD+LYVHS RQF+  C+I GTVDFIFGNAAVVLQ+C I+ARRP  
Sbjct: 120 GSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGS 179

Query: 379 KQKNVVTAQGRTDPNQNTGISIHNSRVMAAPDLVPVLSKFKTFLGRPWKEYSRTVYMQTY 438
            QKN+VTAQGRTDPNQNTGI I  SR+ A  DL PV S F T+LGRPWKEYSRTV MQ+ 
Sbjct: 180 GQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSS 239

Query: 439 LDSLVDPAGWLEWSGNFALNTLFYGEYKNIGPAASTSGRVKWRGYRVITSATEASKFTVG 498
           + ++++PAGW  W GNFAL+TL+YGEY+N G  A+TSGRV W+G++VITS+TEA  FT G
Sbjct: 240 ITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPG 299

Query: 499 SFITGNSWLPATGVPFRSGL 518
           SFI G SWL AT  PF  GL
Sbjct: 300 SFIAGGSWLKATTFPFSLGL 319
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query518
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 99.96
1x91_A153 Invertase/pectin methylesterase inhibitor family p 99.96
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 99.96
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.64
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.45
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.81
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.38
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 98.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.99
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.89
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.66
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.62
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.59
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.55
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.54
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.52
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.48
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.42
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.35
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.28
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.27
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.24
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.0
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.99
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.93
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.92
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 96.81
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.74
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 96.64
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.33
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 96.22
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 96.16
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 96.1
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.1
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.06
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 96.03
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.03
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 95.45
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 95.05
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 91.2
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 90.52
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 89.97
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 88.31
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 87.23
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 86.58
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 86.34
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 85.59
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 85.15
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 84.97
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 83.53
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 83.41
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 82.11
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 81.22
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 81.11
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=1e-90  Score=706.59  Aligned_cols=314  Identities=58%  Similarity=0.987  Sum_probs=298.1

Q ss_pred             CCcEEEcCCCCCCcccHHHHHHHhhccCCCceEEEEEecceeeeeeeecccccCeEEEeCCCcceEEEcCcccCCCcccc
Q 010103          204 RPNLVVAQDGSGNYRTIKAALDAAAKRTGSGRFVIHVKRGVYKENLEIGNKMKNIMLVGDGLRYTIITGSRSVGGGFTTF  283 (518)
Q Consensus       204 ~~~~~V~~~g~g~f~TIq~Ai~aa~~~~~~~~~~I~I~~G~Y~E~v~i~~~~~~itl~G~~~~~t~I~~~~~~~~~~~t~  283 (518)
                      +.+++|+++|+|+|+|||+||++||++ +.+|++|+|+||+|+|+|.|++.|++|+|+|++.+.|+|+++.+..++.+|+
T Consensus         2 ~~~i~V~~dGsg~f~TIq~AI~aap~~-~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~   80 (317)
T 1xg2_A            2 IANAVVAQDGTGDYQTLAEAVAAAPDK-SKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTF   80 (317)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCSS-CSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCSG
T ss_pred             CceEEECCCCCCCcccHHHHHhhcccC-CCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCccc
Confidence            468999999999999999999999997 5889999999999999999998899999999999999999998888889999


Q ss_pred             cceeEEEEcCcEEEEcceeecCCCCCCCceEEEEecCCeeEEEeceeecccceeeecccceeeeecEEEccceeeeccce
Q 010103          284 NSATVAVTGDGFIARGITFRNTAGPQNHQAVALRAGSDLSVFYQCGFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAA  363 (518)
Q Consensus       284 ~sat~~v~~~~~~~~~lti~N~~g~~~~qavAl~~~~d~~~~~~c~~~g~QdTl~~~~~r~~~~~c~I~G~vDfIfG~~~  363 (518)
                      .++||.|.+++|+++||||+|++++..+||+||++.+|+++|+||+|+|+|||||++++||||++|+|+|+||||||+|+
T Consensus        81 ~satv~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~~~  160 (317)
T 1xg2_A           81 RSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAA  160 (317)
T ss_dssp             GGCSEEECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEECCE
T ss_pred             ceeEEEEECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcCCce
Confidence            99999999999999999999999988899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeEEEEecCCCCCceEEEecCCCCCCCCeeEEEEeeEEeeCCCCCcccccceEEeeccccccCcEEEEeecCCCcc
Q 010103          364 VVLQNCMIYARRPMDKQKNVVTAQGRTDPNQNTGISIHNSRVMAAPDLVPVLSKFKTFLGRPWKEYSRTVYMQTYLDSLV  443 (518)
Q Consensus       364 a~f~~c~i~~~~~~~~~~~~itA~~~~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~~~~v~~~t~~~~~I  443 (518)
                      ++||+|+|+++++..++.++||||+|+++.+++||||+||+|+++++..+..+..++||||||++|+|+||++|+|+++|
T Consensus       161 avf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~~~I  240 (317)
T 1xg2_A          161 VVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLI  240 (317)
T ss_dssp             EEEESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEEEEESCEECTTB
T ss_pred             EEEeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceEEEEecccCCcc
Confidence            99999999999876667899999999999999999999999999887644334558999999999999999999999999


Q ss_pred             CCCCccCCCCCCCCcceEEEEeeccCCCCCCCCcccccCccccCCHHHHhcccccccccCCCCccCCCCCCCCCC
Q 010103          444 DPAGWLEWSGNFALNTLFYGEYKNIGPAASTSGRVKWRGYRVITSATEASKFTVGSFITGNSWLPATGVPFRSGL  518 (518)
Q Consensus       444 ~p~Gw~~w~~~~~~~~~~f~Ey~~~Gpga~~~~r~~w~~~~~~~~~~ea~~~~~~~~~~g~~W~p~~~~~~~~~~  518 (518)
                      +|+||.+|++++++++++|+||+|+|||+++++||+|++++++++++||++|+..+||+|++|+|.++|||..||
T Consensus       241 ~p~GW~~w~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~~~~~~~~  315 (317)
T 1xg2_A          241 NPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGL  315 (317)
T ss_dssp             CTTCSCCSSTTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGGSHHHHSCTHHHHGGGCCCCCCSS
T ss_pred             cccccccCCCCCCcCceEEEEEcCCCCCCCcccccccccccccCCHHHHHHhhHHhhcCCCCCcCCCCccccccc
Confidence            999999999888899999999999999999999999999888888899999999999999999999999999986
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 518
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-158
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 5e-99
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 2e-31
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 9e-24
d1ru4a_400 b.80.1.9 (A:) Pectate transeliminase {Erwinia chry 8e-06
d1ofla_ 481 b.80.1.4 (A:) Chondroitinase B {Pedobacter heparin 0.002
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  450 bits (1160), Expect = e-158
 Identities = 202/320 (63%), Positives = 244/320 (76%), Gaps = 1/320 (0%)

Query: 199 QTSPVRPNLVVAQDGSGNYRTIKAALDAAAKRTGSGRFVIHVKRGVYKENLEIGNKMKNI 258
           ++S V PN+VVA DGSG+Y+T+  A+ AA +     R+VI +K GVY+EN+++  K KNI
Sbjct: 1   ESSTVGPNVVVAADGSGDYKTVSEAVAAAPE-DSKTRYVIRIKAGVYRENVDVPKKKKNI 59

Query: 259 MLVGDGLRYTIITGSRSVGGGFTTFNSATVAVTGDGFIARGITFRNTAGPQNHQAVALRA 318
           M +GDG   TIIT S++V  G TTFNSATVA  G GF+AR ITF+NTAG   HQAVALR 
Sbjct: 60  MFLGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRV 119

Query: 319 GSDLSVFYQCGFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARRPMD 378
           GSDLS FY+C    YQD+LYVHS RQF+  C+I GTVDFIFGNAAVVLQ+C I+ARRP  
Sbjct: 120 GSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGS 179

Query: 379 KQKNVVTAQGRTDPNQNTGISIHNSRVMAAPDLVPVLSKFKTFLGRPWKEYSRTVYMQTY 438
            QKN+VTAQGRTDPNQNTGI I  SR+ A  DL PV S F T+LGRPWKEYSRTV MQ+ 
Sbjct: 180 GQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSS 239

Query: 439 LDSLVDPAGWLEWSGNFALNTLFYGEYKNIGPAASTSGRVKWRGYRVITSATEASKFTVG 498
           + ++++PAGW  W GNFAL+TL+YGEY+N G  A+TSGRV W+G++VITS+TEA  FT G
Sbjct: 240 ITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPG 299

Query: 499 SFITGNSWLPATGVPFRSGL 518
           SFI G SWL AT  PF  GL
Sbjct: 300 SFIAGGSWLKATTFPFSLGL 319
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Length = 400 Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Length = 481 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query518
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 99.95
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 99.95
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.11
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.7
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.21
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.56
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.45
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 97.09
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 96.92
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 96.9
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.85
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.65
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.29
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.18
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.1
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.01
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 95.92
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 95.6
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 95.1
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 89.46
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 87.84
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 84.75
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 84.05
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 80.74
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 80.2
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=6.6e-95  Score=732.10  Aligned_cols=315  Identities=64%  Similarity=1.059  Sum_probs=301.9

Q ss_pred             CCCcEEEcCCCCCCcccHHHHHHHhhccCCCceEEEEEecceeeeeeeecccccCeEEEeCCCcceEEEcCcccCCCccc
Q 010103          203 VRPNLVVAQDGSGNYRTIKAALDAAAKRTGSGRFVIHVKRGVYKENLEIGNKMKNIMLVGDGLRYTIITGSRSVGGGFTT  282 (518)
Q Consensus       203 ~~~~~~V~~~g~g~f~TIq~Ai~aa~~~~~~~~~~I~I~~G~Y~E~v~i~~~~~~itl~G~~~~~t~I~~~~~~~~~~~t  282 (518)
                      .+++++|++||+|||+|||+|||++|.+ +..|++|+|+||+|+|+|+|+++|++|+|+|+|++.|+|+++.+..++.+|
T Consensus         5 ~~p~i~V~~dGsGdf~TIq~AIda~p~~-~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~t   83 (319)
T d1gq8a_           5 VGPNVVVAADGSGDYKTVSEAVAAAPED-SKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTT   83 (319)
T ss_dssp             SCCSEEECTTSCSSBSSHHHHHHHSCSS-CSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCT
T ss_pred             CCCCEEECCCCCCCccCHHHHHhhCccC-CCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCCcc
Confidence            5678999999999999999999999997 688999999999999999999999999999999999999999988888899


Q ss_pred             ccceeEEEEcCcEEEEcceeecCCCCCCCceEEEEecCCeeEEEeceeecccceeeecccceeeeecEEEccceeeeccc
Q 010103          283 FNSATVAVTGDGFIARGITFRNTAGPQNHQAVALRAGSDLSVFYQCGFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNA  362 (518)
Q Consensus       283 ~~sat~~v~~~~~~~~~lti~N~~g~~~~qavAl~~~~d~~~~~~c~~~g~QdTl~~~~~r~~~~~c~I~G~vDfIfG~~  362 (518)
                      +.++|+.+.+++|+++||||+|++++.++|||||++.+||++|++|+|+|||||||+++|||||+||+|+|+||||||+|
T Consensus        84 ~~sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIfG~~  163 (319)
T d1gq8a_          84 FNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNA  163 (319)
T ss_dssp             GGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEESC
T ss_pred             ccccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEecCc
Confidence            99999999999999999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeEEEEecCCCCCceEEEecCCCCCCCCeeEEEEeeEEeeCCCCCcccccceEEeeccccccCcEEEEeecCCCc
Q 010103          363 AVVLQNCMIYARRPMDKQKNVVTAQGRTDPNQNTGISIHNSRVMAAPDLVPVLSKFKTFLGRPWKEYSRTVYMQTYLDSL  442 (518)
Q Consensus       363 ~a~f~~c~i~~~~~~~~~~~~itA~~~~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~~~~v~~~t~~~~~  442 (518)
                      +++||+|+|+++.+..++.++||||+|+++.+++||||+||+|+++++..+.....++||||||+++++|||++|+|++|
T Consensus       164 ~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~l~~~  243 (319)
T d1gq8a_         164 AVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNV  243 (319)
T ss_dssp             EEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCEECTT
T ss_pred             eeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEecccccc
Confidence            99999999999987667789999999999999999999999999998876555667899999999999999999999999


Q ss_pred             cCCCCccCCCCCCCCcceEEEEeeccCCCCCCCCcccccCccccCCHHHHhcccccccccCCCCccCCCCCCCCCC
Q 010103          443 VDPAGWLEWSGNFALNTLFYGEYKNIGPAASTSGRVKWRGYRVITSATEASKFTVGSFITGNSWLPATGVPFRSGL  518 (518)
Q Consensus       443 I~p~Gw~~w~~~~~~~~~~f~Ey~~~Gpga~~~~r~~w~~~~~~~~~~ea~~~~~~~~~~g~~W~p~~~~~~~~~~  518 (518)
                      |.|+||.+|++.+.+++++|+||+|+|||+++++||+|++++++|+++||++|+.++||+|++|+|.++|||.+||
T Consensus       244 I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t~~p~~~~l  319 (319)
T d1gq8a_         244 INPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             BCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             cccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccCCCccCCCC
Confidence            9999999999888899999999999999999999999998888999999999999999999999999999999997
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure