Citrus Sinensis ID: 010104

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------52
MEMEMEKEQEFEWAEAQEIEISVDDLVAAAKQQLQFLAAVDRNRWLYEGPALQRAIYRYNACWLPLLAKHSESHISKGCLVVPLDCEWIWHCHRLNPVQYKSDCEELYGKNLDNSYVVSSIQGTCRKETEEIWNRLYPEEPYELDLAKISSEDFSAELSGLEKFTKYDLVSAVKRQSPFFYQVSRSHFNNDVFLEEAVARYKGFLHLIKKNRERSIKRFCVPTYDIDLIWHTHQLHPDSYCKDMSKTLGKVLEHDDMDQDRTKGKKLDTGFSGTTKQWEETFGSRYPKAGAMYRGTAPSPLTTIPFSSDIVSKEVVSSKECQKIINIPDLKIVEVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEATGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTIPTLAPHLLRMVRSRPLSKSSCFFPLPGRIQPAKSWTRVIDETQSEVISLQMRYN
cccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHccccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHcccccccccccccccccccHHccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccEEEEEcccccccccccccEEEccccccEEEEEEEEcccccEEEEEEEccccccccccccccccEEEEEccccccccccccEEEEEEccccccccccccEEEEEEEEEccccccccEEEEcccccccccccccccccccccccccEEEEcccccEEEEEEEEEc
ccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHccccccEEEEEEEEEEEcccccccccccccEEEEEEEEcccHHEccccccEEccccccEEEEEEEEccccEEEEEEEEEcccccccccccccccEEEEEHHHHcccccccEEEEEEEccccccccccccEEEEEEEEEcccccccHHEEccccccccccccccccccccccccEEEEEEcccccEEEEEEEEEc
MEMEMEKEQEFEWAEAQEIEISVDDLVAAAKQQLQFLAAVDRnrwlyegpALQRAIYRYNACWlpllakhseshiskgclvvpldcewiwhchrlnpvqyksdceelygknldnsyVVSSIQGTCRKETEEIWNrlypeepyeldlakissEDFSAELsglekftkYDLVSAVkrqspffyqvsrshfnndVFLEEAVARYKGFLHLIKKNRERSikrfcvptydidliwhthqlhpdsyckDMSKTLGkvlehddmdqdrtkgkkldtgfsgtTKQWEEtfgsrypkagamyrgtapsplttipfssdivsKEVVsskecqkiinipdlkIVEVFVEIVAvknlpedhkdkgdlfvffsksqpdiffNAKQKLTILSKSGMKQVASFQCEATGELLFELVShstskipmtgasktmgtaSLSLQNFISPISKLAVEQwfdlvprsgnvsskpislRIAVsftiptlaphllrmvrsrplsksscffplpgriqpakswTRVIDETQSEVISLQMRYN
MEMEMEKEQEFEWAEAQEIEISVDDLVAAAKQQLQFLAAVDRNRWLYEGPALQRAIYRYNACWLPLLAKHSESHISKGCLVVPLDCEWIWHCHRLNPVQYKSDCEELYGKNLDNSYVVSSIQGTCRKETEEIWNRLYPEEPYELDLAKISSEDFSAELSGLEKFTKYDLVSAVKRQSPFFYQVSRSHFNNDVFLEEAVARYKGFLHLIKKNRERSIKRFCVPTYDIDLIWHTHQLHPDSYCKDMSKTLGKVLehddmdqdrtkgkkldtgfsgttkqweeTFGSRYPKAGAMYRGTAPSPLTTIPFSSDIVSKEVVSSKecqkiinipdlkivEVFVEIVAVKnlpedhkdKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEATGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTIPTLAPHLLRMVRSRPlsksscffplpgriqpakswtrvIDETQSEVISLQMRYN
MememekeqefewaeaqeieiSVDDlvaaakqqlqflaaVDRNRWLYEGPALQRAIYRYNACWLPLLAKHSESHISKGCLVVPLDCEWIWHCHRLNPVQYKSDCEELYGKNLDNSYVVSSIQGTCRKETEEIWNRLYPEEPYELDLAKISSEDFSAELSGLEKFTKYDLVSAVKRQSPFFYQVSRSHFNNDVFLEEAVARYKGFLHLIKKNRERSIKRFCVPTYDIDLIWHTHQLHPDSYCKDMSKTLGKVLEHDDMDQDRTKGKKLDTGFSGTTKQWEETFGSRYPKAGAMYRGTAPSPLTTIPFSSDIVSKEVVSSKECQKIINIPDLKIVEVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEATGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTIPTLAPHLLRMVRSRPLSKSSCFFPLPGRIQPAKSWTRVIDETQSEVISLQMRYN
************WAEAQEIEISVDDLVAAAKQQLQFLAAVDRNRWLYEGPALQRAIYRYNACWLPLLAKHSESHISKGCLVVPLDCEWIWHCHRLNPVQYKSDCEELYGKNLDNSYVVSSIQGTCRKETEEIWNRLYPEEPYELDLAKISSEDFSAELSGLEKFTKYDLVSAVKRQSPFFYQVSRSHFNNDVFLEEAVARYKGFLHLIKKNRERSIKRFCVPTYDIDLIWHTHQLHPDSYCKDM***********************************************MY*******LTTIPFSSDIVSKEVVSSKECQKIINIPDLKIVEVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEATGELLFELVSH********************LQNFISPISKLA*******************SLRIAVSFTIPTLAPHLLRMVRSRPLSKSSCFFPLPGRIQPAKSWTRVID**************
******************IEISVDDLVAAAKQQLQFLAAVDRNRWLYEGPALQRAIYRYNACWLPLLAKHSE*HISKGCLVVPLDCEWIWHCHRLNPVQYKSDCEELYGKNLDNSYVVSSIQGTCRKETEEIWNRLYPEEPYELDLAKISSEDFSAELSGLEKFTKYDLVSAVKRQSPFFYQVSRSHFNNDVFLEEAVARYKGFLHLIKKNRERSIKRFCVPTYDIDLIWHTHQLHPDSYCKDMSKTLGKVLEHDDMDQDRTKGKKLDTGFSGTTKQWEETFGSRYPKAGAMYRGTAPSPLTTIPF******************INIPDLKIVEVFVEI****************FVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEATGELLFELVSH*****************SLSLQNFISPISKLAVEQWFDLVPRS*****KP**LRIAVSFTIPTLAPHLLRMVRSRPLSKSSCFF**PGRIQPAKSWTRVIDETQSEVISLQMRY*
************WAEAQEIEISVDDLVAAAKQQLQFLAAVDRNRWLYEGPALQRAIYRYNACWLPLLAKHSESHISKGCLVVPLDCEWIWHCHRLNPVQYKSDCEELYGKNLDNSYVVSSIQGTCRKETEEIWNRLYPEEPYELDLAKISSEDFSAELSGLEKFTKYDLVSAVKRQSPFFYQVSRSHFNNDVFLEEAVARYKGFLHLIKKNRERSIKRFCVPTYDIDLIWHTHQLHPDSYCKDMSKTLGKVLEHDDMDQDRTKGKKLDTGFSGTTKQWEETFGSRYPKAGAMYRGTAPSPLTTIPFSSDI*********ECQKIINIPDLKIVEVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEATGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTIPTLAPHLLRMVRSRPLSKSSCFFPLPGRIQPAKSWTRVIDETQSEVISLQMRYN
********QEFEWAEAQEIEISVDDLVAAAKQQLQFLAAVDRNRWLYEGPALQRAIYRYNACWLPLLAKHSESHISKGCLVVPLDCEWIWHCHRLNPVQYKSDCEELYGKNLDNSYVVSSIQGTCRKETEEIWNRLYPEEPYELDLAKISSEDFSAE*S*LEKFTKYDLVSAVKRQSPFFYQVSRSHFNNDVFLEEAVARYKGFLHLIKKNRERSIKRFCVPTYDIDLIWHTHQLHPDSYCKDMSKTLGKVLEHDDMDQDRTKGKKLDTGFSGTTKQWEETFGSRYPKAGAMYRGTAPSPLTTIPFSSDIVSKEVVSSKECQKIINIPDLKIVEVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEATGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTIPTLAPHLLRMVRSRPLSKSSCFFPLPGRIQPAKSWTRVIDETQSEVISLQMRYN
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MEMEMEKEQEFEWAEAQEIEISVDDLVAAAKQQLQFLAAVDRNRWLYEGPALQRAIYRYNACWLPLLAKHSESHISKGCLVVPLDCEWIWHCHRLNPVQYKSDCEELYGKNLDNSYVVSSIQGTCRKETEEIWNRLYPEEPYELDLAKISSEDFSAELSGLEKFTKYDLVSAVKRQSPFFYQVSRSHFNNDVFLEEAVARYKGFLHLIKKNRERSIKRFCVPTYDIDLIWHTHQLHPDSYCKDMSKTLGKVLEHDDMDQDRTKGKKLDTGFSGTTKQWEETFGSRYPKAGAMYRGTAPSPLTTIPFSSDIVSKEVVSSKECQKIINIPDLKIVEVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEATGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTIPTLAPHLLRMVRSRPLSKSSCFFPLPGRIQPAKSWTRVIDETQSEVISLQMRYN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query518
359496777 825 PREDICTED: uncharacterized protein LOC10 0.982 0.616 0.718 0.0
255572563 871 DNA binding protein, putative [Ricinus c 0.980 0.583 0.693 0.0
224133168 789 predicted protein [Populus trichocarpa] 0.982 0.645 0.686 0.0
296084627 648 unnamed protein product [Vitis vinifera] 0.930 0.743 0.718 0.0
356496614 852 PREDICTED: uncharacterized protein LOC10 0.982 0.597 0.667 0.0
356531387 827 PREDICTED: uncharacterized protein LOC10 0.982 0.615 0.656 0.0
357485319 897 Glycine-rich protein [Medicago truncatul 0.982 0.567 0.652 0.0
449465866 853 PREDICTED: uncharacterized protein LOC10 0.982 0.596 0.647 0.0
449514696 853 PREDICTED: uncharacterized protein LOC10 0.982 0.596 0.647 0.0
297821489 920 hypothetical protein ARALYDRAFT_343817 [ 0.986 0.555 0.649 0.0
>gi|359496777|ref|XP_002265108.2| PREDICTED: uncharacterized protein LOC100252003 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/515 (71%), Positives = 429/515 (83%), Gaps = 6/515 (1%)

Query: 5   MEKEQEFEWAEAQEIEISVDDLVAAAKQQLQFLAAVDRNRWLYEGPALQRAIYRYNACWL 64
           MEKEQE EW EAQ+I IS +DLVA AK QLQFLA VD++R LY+GP LQ+AIYRYNACWL
Sbjct: 1   MEKEQELEWLEAQKIVIS-EDLVAVAKMQLQFLAVVDKHRCLYDGPTLQKAIYRYNACWL 59

Query: 65  PLLAKHSESHISKGCLVVPLDCEWIWHCHRLNPVQYKSDCEELYGKNLDNSYVVSSIQGT 124
           PLLAKHSES I KG LVVP+DCEWIWHCHRLNPV+YK+DCE+LYG+ LDN  VVSS+QG 
Sbjct: 60  PLLAKHSESQIFKGPLVVPVDCEWIWHCHRLNPVRYKTDCEDLYGRILDNYNVVSSVQGA 119

Query: 125 CRKETEEIWNRLYPEEPYELDLAKISSEDFSAELSGLEKFTKYDLVSAVKRQSPFFYQVS 184
              ETEEIWN +YP EPY LDL K  S+D S ++SG EK TKYDLVSAVKRQSPF YQVS
Sbjct: 120 STSETEEIWNTMYPNEPYLLDLTKDFSKDTSEKISGCEKHTKYDLVSAVKRQSPFCYQVS 179

Query: 185 RSHFNNDVFLEEAVARYKGFLHLIKKNRERSIKRFCVPTYDIDLIWHTHQLHPDSYCKDM 244
           R H NN  FLE AVARYKGFL+LIK+NRERSIK FCVPTYDIDLIWH+HQLHP SYCKD+
Sbjct: 180 RPHMNNQHFLEGAVARYKGFLYLIKRNRERSIKCFCVPTYDIDLIWHSHQLHPVSYCKDL 239

Query: 245 SKTLGKVLEHDDMDQDRTKGKKLDTGFSGTTKQWEETFGSRYPKAGAMYRGTAPSPLTTI 304
            K +GKVLEHDDMD DRTKGKKLD GFS TTKQWEETFGSRY +AGAM+RG+APSPLTT 
Sbjct: 240 CKLVGKVLEHDDMDSDRTKGKKLDVGFSETTKQWEETFGSRYWRAGAMHRGSAPSPLTTT 299

Query: 305 PFSSDIVSKEVVSSKECQKIINIPDLKIVEVFVEIVAVKNLPEDHKDKGDLFVFFSKSQP 364
           P+S ++++K+VV+  +CQKII +P++K+VEV +EIV VKNLP  H  KG L+V FSK+QP
Sbjct: 300 PYSPNMMTKKVVAPYDCQKIIQLPEVKVVEVLLEIVGVKNLPVGH--KGSLYVSFSKTQP 357

Query: 365 DIFFNAKQKLTILSKSGMKQVASFQCEATGELLFELVSHSTS---KIPMTGASKTMGTAS 421
           D  FNAK++LTI S+SG KQVASFQCE TGELLF+L+SHS S    +P++  SK MG+ S
Sbjct: 358 DTIFNAKRRLTIFSESGEKQVASFQCEPTGELLFQLISHSPSNLPNLPISRPSKKMGSTS 417

Query: 422 LSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTIPTLAPHLLRMVRSRPLS 481
           LSL+ F+SPIS+L+VE+W +LVP SGNVS+KPI LRIA+SFT+P LAP +   V SRP  
Sbjct: 418 LSLREFLSPISRLSVEKWLELVPSSGNVSAKPICLRIAISFTVPALAPRIFHTVCSRPFL 477

Query: 482 KSSCFFPLPGRIQPAKSWTRVIDETQSEVISLQMR 516
           +SSCFFPLPGRIQ AK WTRVIDE  SEVISLQMR
Sbjct: 478 RSSCFFPLPGRIQHAKRWTRVIDEAGSEVISLQMR 512

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255572563|ref|XP_002527215.1| DNA binding protein, putative [Ricinus communis] gi|223533391|gb|EEF35141.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224133168|ref|XP_002321500.1| predicted protein [Populus trichocarpa] gi|222868496|gb|EEF05627.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296084627|emb|CBI25715.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356496614|ref|XP_003517161.1| PREDICTED: uncharacterized protein LOC100810300 [Glycine max] Back     alignment and taxonomy information
>gi|356531387|ref|XP_003534259.1| PREDICTED: uncharacterized protein LOC100782361 [Glycine max] Back     alignment and taxonomy information
>gi|357485319|ref|XP_003612947.1| Glycine-rich protein [Medicago truncatula] gi|163889366|gb|ABY48136.1| glycine-rich protein [Medicago truncatula] gi|355514282|gb|AES95905.1| Glycine-rich protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449465866|ref|XP_004150648.1| PREDICTED: uncharacterized protein LOC101219844 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449514696|ref|XP_004164454.1| PREDICTED: uncharacterized protein LOC101228427 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297821489|ref|XP_002878627.1| hypothetical protein ARALYDRAFT_343817 [Arabidopsis lyrata subsp. lyrata] gi|297324466|gb|EFH54886.1| hypothetical protein ARALYDRAFT_343817 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query518
TAIR|locus:2065983 819 AT2G22660 "AT2G22660" [Arabido 0.916 0.579 0.647 2.6e-173
TAIR|locus:2121013 787 AT4G37900 [Arabidopsis thalian 0.893 0.588 0.632 5.1e-161
WB|WBGene00017980 792 F32B5.7 [Caenorhabditis elegan 0.469 0.306 0.372 1.1e-41
TAIR|locus:2011821 752 AT1G56230 "AT1G56230" [Arabido 0.444 0.305 0.308 1.1e-24
CGD|CAL0005494722 orf19.4880 [Candida albicans ( 0.227 0.163 0.348 7.7e-11
UNIPROTKB|Q5AP84722 YFW5 "Hypothetical YFW family 0.227 0.163 0.348 7.7e-11
CGD|CAL0002220619 orf19.6449 [Candida albicans ( 0.216 0.180 0.338 6e-10
UNIPROTKB|Q5A314619 YFW4 "Hypothetical YFW family 0.216 0.180 0.338 6e-10
CGD|CAL0006251723 orf19.4921 [Candida albicans ( 0.214 0.153 0.341 1e-09
UNIPROTKB|Q5AL56723 YFW1 "Hypothetical YFW family 0.214 0.153 0.341 1e-09
TAIR|locus:2065983 AT2G22660 "AT2G22660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1684 (597.9 bits), Expect = 2.6e-173, P = 2.6e-173
 Identities = 311/480 (64%), Positives = 389/480 (81%)

Query:    40 VDRNRWLYEGPALQRAIYRYNACWLPLLAKHSESH-ISKGCLVVPLDCEWIWHCHRLNPV 98
             VDRNRWLY+GPAL++AIYRYNACWLPLL K+SES  +S+G LV PLDCEWIWHCHRLNPV
Sbjct:    37 VDRNRWLYDGPALEKAIYRYNACWLPLLVKYSESSSVSEGSLVPPLDCEWIWHCHRLNPV 96

Query:    99 QYKSDCEELYGKNLDNSYVVSSIQGTCRKETEEIWNRLYPEEPYELDLAKISSEDFSAEL 158
             +Y SDCE+ YG+ LDNS V+SS+ G C+ +TE++W RLYP+EPYELDL  I  ED S + 
Sbjct:    97 RYNSDCEQFYGRVLDNSGVLSSVDGNCKLKTEDLWKRLYPDEPYELDLDNIDLEDISEKS 156

Query:   159 SGLEKFTKYDLVSAVKRQSPFFYQVSRSHFNNDVFLEEAVARYKGFLHLIKKNRERSIKR 218
             S LEK TKYDLVSAVKRQSPF+YQVSRSH N+D+FL+EAVARYKGFL+LIK NRERS+KR
Sbjct:   157 SALEKCTKYDLVSAVKRQSPFYYQVSRSHVNSDIFLQEAVARYKGFLYLIKMNRERSLKR 216

Query:   219 FCVPTYDIDLIWHTHQLHPDSYCKDMSKTLGKVLEHDDMDQDRTKGKKLDTGFSGTTKQW 278
             FCVPTYD+DLIWHTHQLHP SYC DM K +GKVLEHDD D DR KGKKLDTGFS TT QW
Sbjct:   217 FCVPTYDVDLIWHTHQLHPVSYCDDMVKLIGKVLEHDDTDSDRGKGKKLDTGFSKTTAQW 276

Query:   279 EETFGSRYPKAGAMYRGTAPSPLTTIPFSSDIVSKEVVSSKECQKIINIPDLKIVEVFVE 338
             EETFG+RY KAGAM+RG  P P+T  P++SD++ K+  +  + Q +I  P++++VEV +E
Sbjct:   277 EETFGTRYWKAGAMHRGKTPVPVTNSPYASDVLVKDPTAKDDFQNLIQFPEVEVVEVLLE 336

Query:   339 IVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEATGELLF 398
             I+ V+NLP+ HK  G + V FSK+QPD  FNA+++LTILS+ G KQVA+FQCE TGEL+F
Sbjct:   337 IIGVRNLPDGHK--GKVSVMFSKTQPDSLFNAERRLTILSEVGEKQVATFQCEPTGELVF 394

Query:   399 ELVSHSTSKIPMTGASKTMGTASLSLQNFISP-ISKLAVEQWFDLVPRSGN-VSSKPISL 456
             +L+S S SKIP++   K +G ASLSL+ F+ P I++L+VE+W +L P  G+   +KPISL
Sbjct:   395 KLISCSPSKIPVSREPKNLGFASLSLKEFLFPVITQLSVEKWLELTPSKGSQTDTKPISL 454

Query:   457 RIAVSFTIPTLAPHLLRMVRSRPLSKSSCFFPLPGRIQPAKSWTRVIDETQSEVISLQMR 516
             R+AVSFT P  +P +L MV+SRP  K SCFFP+ G+ + AKS T ++DETQ+EVI+LQ+R
Sbjct:   455 RVAVSFTPPVRSPSVLHMVQSRPSCKGSCFFPIIGKSRLAKSSTHIVDETQTEVITLQIR 514
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2121013 AT4G37900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00017980 F32B5.7 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TAIR|locus:2011821 AT1G56230 "AT1G56230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
CGD|CAL0005494 orf19.4880 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AP84 YFW5 "Hypothetical YFW family protein 5" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
CGD|CAL0002220 orf19.6449 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5A314 YFW4 "Hypothetical YFW family protein 4" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
CGD|CAL0006251 orf19.4921 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AL56 YFW1 "Hypothetical YFW family protein 1" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00011948001
SubName- Full=Chromosome undetermined scaffold_2601, whole genome shotgun sequence; Flags- Fragment; (515 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query518
pfam07173137 pfam07173, DUF1399, Protein of unknown function (D 1e-51
pfam07173137 pfam07173, DUF1399, Protein of unknown function (D 8e-05
>gnl|CDD|203591 pfam07173, DUF1399, Protein of unknown function (DUF1399) Back     alignment and domain information 
 Score =  172 bits (437), Expect = 1e-51
 Identities = 65/146 (44%), Positives = 88/146 (60%), Gaps = 10/146 (6%)

Query: 99  QYKSDCEELYGKNLDNSYVVSSIQGT-CRKETEEIWNRLYPEEPYELDLAKISSEDFSAE 157
            Y+  CE  +G+ +++  +  SI        + ++W R YP EP+EL+L  +S  + +  
Sbjct: 1   SYRRYCERRFGRLINHPSIEDSINEEYALHRSRKLWKRRYPREPFELNLISLSV-NGTGS 59

Query: 158 LSGLEKFTKYDLVSAVKRQSPFFYQVSRSHFNNDVFLEEAVARYKGFLHLIKKNRERSIK 217
           L G       DLV AVKRQS F Y+VS  H +  VFL EA+ARYK FL+L+KKN E+   
Sbjct: 60  LIG------EDLVGAVKRQSRFVYKVSSPHISEGVFLIEALARYKRFLYLLKKNGEKC-- 111

Query: 218 RFCVPTYDIDLIWHTHQLHPDSYCKD 243
            F VPT DIDL+WHTHQL+P  Y  D
Sbjct: 112 LFLVPTLDIDLMWHTHQLNPYGYFDD 137

This family represents a conserved region approximately 150 residues long within a number of hypothetical plant proteins of unknown function. Length = 137
>gnl|CDD|203591 pfam07173, DUF1399, Protein of unknown function (DUF1399) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 518
PF07173136 DUF1399: Protein of unknown function (DUF1399); In 100.0
PF07173136 DUF1399: Protein of unknown function (DUF1399); In 99.86
COG4278269 Uncharacterized conserved protein [Function unknow 98.73
cd04013146 C2_SynGAP_like C2 domain present in Ras GTPase act 98.2
cd04042121 C2A_MCTP_PRT C2 domain first repeat found in Multi 98.02
cd08678126 C2_C21orf25-like C2 domain found in the Human chro 97.92
cd08400126 C2_Ras_p21A1 C2 domain present in RAS p21 protein 97.9
cd04016121 C2_Tollip C2 domain present in Toll-interacting pr 97.61
cd08682126 C2_Rab11-FIP_classI C2 domain found in Rab11-famil 97.6
cd04015158 C2_plant_PLD C2 domain present in plant phospholip 97.57
cd04050105 C2B_Synaptotagmin-like C2 domain second repeat pre 97.39
cd04019150 C2C_MCTP_PRT_plant C2 domain third repeat found in 97.37
cd08409137 C2B_Synaptotagmin-15 C2 domain second repeat prese 97.24
cd04043126 C2_Munc13_fungal C2 domain in Munc13 (mammalian un 97.17
cd08373127 C2A_Ferlin C2 domain first repeat in Ferlin. Ferli 97.11
cd08379126 C2D_MCTP_PRT_plant C2 domain fourth repeat found i 97.08
cd08685119 C2_RGS-like C2 domain of the Regulator Of G-Protei 97.08
cd08688110 C2_KIAA0528-like C2 domain found in the Human KIAA 97.06
cd08385124 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe 97.03
cd08681118 C2_fungal_Inn1p-like C2 domain found in fungal Ing 97.01
cd08382123 C2_Smurf-like C2 domain present in Smad ubiquitina 96.99
cd04031125 C2A_RIM1alpha C2 domain first repeat contained in 96.99
cd04033133 C2_NEDD4_NEDD4L C2 domain present in the Human neu 96.98
cd08378121 C2B_MCTP_PRT_plant C2 domain second repeat found i 96.97
cd04029125 C2A_SLP-4_5 C2 domain first repeat present in Syna 96.97
cd04022127 C2A_MCTP_PRT_plant C2 domain first repeat found in 96.94
cd08376116 C2B_MCTP_PRT C2 domain second repeat found in Mult 96.93
cd04028146 C2B_RIM1alpha C2 domain second repeat contained in 96.85
cd04011111 C2B_Ferlin C2 domain second repeat in Ferlin. Ferl 96.81
cd08394127 C2A_Munc13 C2 domain first repeat in Munc13 (mamma 96.78
cd00276134 C2B_Synaptotagmin C2 domain second repeat present 96.77
cd08381122 C2B_PI3K_class_II C2 domain second repeat present 96.74
cd04036119 C2_cPLA2 C2 domain present in cytosolic PhosphoLip 96.74
cd08387124 C2A_Synaptotagmin-8 C2A domain first repeat presen 96.72
cd04044124 C2A_Tricalbin-like C2 domain first repeat present 96.68
cd08393125 C2A_SLP-1_2 C2 domain first repeat present in Syna 96.67
cd08388128 C2A_Synaptotagmin-4-11 C2A domain first repeat pre 96.64
cd04030127 C2C_KIAA1228 C2 domain third repeat present in unc 96.61
cd04024128 C2A_Synaptotagmin-like C2 domain first repeat pres 96.61
cd08392128 C2A_SLP-3 C2 domain first repeat present in Synapt 96.6
cd04051125 C2_SRC2_like C2 domain present in Soybean genes Re 96.57
cd04010148 C2B_RasA3 C2 domain second repeat present in RAS p 96.55
cd08675137 C2B_RasGAP C2 domain second repeat of Ras GTPase a 96.55
cd04040115 C2D_Tricalbin-like C2 domain fourth repeat present 96.55
cd04045120 C2C_Tricalbin-like C2 domain third repeat present 96.52
cd04014132 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) 96.51
cd08408138 C2B_Synaptotagmin-14_16 C2 domain second repeat pr 96.51
cd08402136 C2B_Synaptotagmin-1 C2 domain second repeat presen 96.48
cd08406136 C2B_Synaptotagmin-12 C2 domain second repeat prese 96.45
cd04026131 C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( 96.45
cd08389124 C2A_Synaptotagmin-14_16 C2A domain first repeat pr 96.44
cd08391121 C2A_C2C_Synaptotagmin_like C2 domain first and thi 96.43
cd08386125 C2A_Synaptotagmin-7 C2A domain first repeat presen 96.42
cd08390123 C2A_Synaptotagmin-15-17 C2A domain first repeat pr 96.27
cd08403134 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe 96.21
PLN02270 808 phospholipase D alpha 96.21
cd04049124 C2_putative_Elicitor-responsive_gene C2 domain pre 96.18
cd08383117 C2A_RasGAP C2 domain (first repeat) of Ras GTPase 96.18
cd04035123 C2A_Rabphilin_Doc2 C2 domain first repeat present 96.16
PLN03008 868 Phospholipase D delta 96.1
cd04021125 C2_E3_ubiquitin_ligase C2 domain present in E3 ubi 96.03
cd08384133 C2B_Rabphilin_Doc2 C2 domain second repeat present 96.0
cd08405136 C2B_Synaptotagmin-7 C2 domain second repeat presen 95.9
cd04041111 C2A_fungal C2 domain first repeat; fungal group. C 95.88
cd04020162 C2B_SLP_1-2-3-4 C2 domain second repeat present in 95.85
cd04025123 C2B_RasA1_RasA4 C2 domain second repeat present in 95.83
cd08404136 C2B_Synaptotagmin-4 C2 domain second repeat presen 95.8
cd08377119 C2C_MCTP_PRT C2 domain third repeat found in Multi 95.79
cd00275128 C2_PLC_like C2 domain present in Phosphoinositide- 95.77
cd08521123 C2A_SLP C2 domain first repeat present in Synaptot 95.7
cd04054121 C2A_Rasal1_RasA4 C2 domain first repeat present in 95.64
cd08395120 C2C_Munc13 C2 domain third repeat in Munc13 (mamma 95.63
cd00030102 C2 C2 domain. The C2 domain was first identified i 95.57
cd08375136 C2_Intersectin C2 domain present in Intersectin. A 95.4
smart00239101 C2 Protein kinase C conserved region 2 (CalB). Ca2 95.38
cd08407138 C2B_Synaptotagmin-13 C2 domain second repeat prese 95.31
cd04017135 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl 95.16
cd08401121 C2A_RasA2_RasA3 C2 domain first repeat present in 95.13
cd08690155 C2_Freud-1 C2 domain found in 5' repressor element 95.11
cd04047110 C2B_Copine C2 domain second repeat in Copine. Ther 95.03
cd08691137 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li 95.0
cd04027127 C2B_Munc13 C2 domain second repeat in Munc13 (mamm 94.99
cd04046126 C2_Calpain C2 domain present in Calpain proteins. 94.96
PF0016885 C2: C2 domain; InterPro: IPR000008 The C2 domain i 94.9
cd08680124 C2_Kibra C2 domain found in Human protein Kibra. K 94.88
cd08410135 C2B_Synaptotagmin-17 C2 domain second repeat prese 94.63
cd04038145 C2_ArfGAP C2 domain present in Arf GTPase Activati 94.6
cd04009133 C2B_Munc13-like C2 domain second repeat in Munc13 94.59
cd08676153 C2A_Munc13-like C2 domain first repeat in Munc13 ( 94.31
cd04032127 C2_Perforin C2 domain of Perforin. Perforin contai 94.15
cd04052111 C2B_Tricalbin-like C2 domain second repeat present 94.02
cd04039108 C2_PSD C2 domain present in Phosphatidylserine dec 93.9
cd08677118 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a 93.22
cd04037124 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli 92.92
cd08692135 C2B_Tac2-N C2 domain second repeat found in Tac2-N 92.9
cd04048120 C2A_Copine C2 domain first repeat in Copine. There 90.66
cd04018151 C2C_Ferlin C2 domain third repeat in Ferlin. Ferli 90.06
cd08686118 C2_ABR C2 domain in the Active BCR (Breakpoint clu 89.38
PLN032002102 cellulose synthase-interactive protein; Provisiona 88.5
PLN02352 758 phospholipase D epsilon 88.23
KOG1028421 consensus Ca2+-dependent phospholipid-binding prot 84.51
COG4278269 Uncharacterized conserved protein [Function unknow 83.03
>PF07173 DUF1399: Protein of unknown function (DUF1399); InterPro: IPR009836 This family represents a conserved region approximately 150 residues long within a number of hypothetical plant proteins of unknown function Back     alignment and domain information 
Probab=100.00  E-value=5.6e-36  Score=273.74  Aligned_cols=135  Identities=45%  Similarity=0.845  Sum_probs=123.6

Q ss_pred             hHHHHHHHHhCCcCCCCCcCcccccc-chhhhHHHhhhhCCCCCccccccccccccchhcccccccchhchHHHHHHhhh
Q 010104           99 QYKSDCEELYGKNLDNSYVVSSIQGT-CRKETEEIWNRLYPEEPYELDLAKISSEDFSAELSGLEKFTKYDLVSAVKRQS  177 (518)
Q Consensus        99 ~Y~~~C~~~~g~~id~~~~~~~~~~~-~~~~~~~~W~~~yP~epf~~~~~~~~~~~i~~~~~~~~~~~~~DLv~aV~RQ~  177 (518)
                      +|++||+++|||+|+++.+.+..++. +..+++++|+..||.|||+++......       .+...++++||++||+||+
T Consensus         1 ~Y~~~C~~~~grii~~~~~~~~~~~~~a~~~~~~~w~~~~p~e~~~~~~~~~~~-------~~~~~~~~~DLv~av~Rq~   73 (136)
T PF07173_consen    1 SYRKDCERRFGRIIDHPSISDSINEVYAKNRCRKIWQARYPREPFDLNLISMTV-------WSNGIPISYDLVAAVKRQS   73 (136)
T ss_pred             ChHHHHHHHhchhcCCCchhHHHHHHHHHhhhHHHHHHhCCCchHhhhhhhccc-------ccccccchHHHHHHHHHHH
Confidence            59999999999999999999988888 899999999999999999987766554       1225679999999999999


Q ss_pred             HHHHHhccCCCCcHHHHHHHHHHHHHhHHhhhhcccccccccccCchhHHHHHhhcccChhhHHHH
Q 010104          178 PFFYQVSRSHFNNDVFLEEAVARYKGFLHLIKKNRERSIKRFCVPTYDIDLIWHTHQLHPDSYCKD  243 (518)
Q Consensus       178 ~F~~~v~~P~~~d~~~L~rAi~RYk~FL~L~~~~p~~~~~~~LVPTlDIDLvWHTHqL~p~~Y~~d  243 (518)
                      .|+++|++|++.+..||.+|+.||++||.|++.++++   .+||||+|||||||||||+|..|++|
T Consensus        74 ~F~~~~~~p~~~~~~~l~~A~~RY~~Fl~l~~~~~~~---~~lVPtlDIdLvWHTHqL~p~~Y~~D  136 (136)
T PF07173_consen   74 SFVYKMSSPHLSETVFLERAIRRYKRFLDLLKKYPDK---SFLVPTLDIDLVWHTHQLNPVSYRED  136 (136)
T ss_pred             HHHHHHccHhhcCcHHHHHHHHHHHHHHHHHHhCCCC---CCCCChHHHHHHHHHhccCchhccCC
Confidence            9999999999999999999999999999999999864   57999999999999999999999876

>PF07173 DUF1399: Protein of unknown function (DUF1399); InterPro: IPR009836 This family represents a conserved region approximately 150 residues long within a number of hypothetical plant proteins of unknown function Back     alignment and domain information
>COG4278 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family Back     alignment and domain information
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) Back     alignment and domain information
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein Back     alignment and domain information
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) Back     alignment and domain information
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) Back     alignment and domain information
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I Back     alignment and domain information
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) Back     alignment and domain information
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins Back     alignment and domain information
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset Back     alignment and domain information
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 Back     alignment and domain information
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group Back     alignment and domain information
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin Back     alignment and domain information
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset Back     alignment and domain information
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family Back     alignment and domain information
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone Back     alignment and domain information
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 Back     alignment and domain information
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins Back     alignment and domain information
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins Back     alignment and domain information
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins Back     alignment and domain information
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) Back     alignment and domain information
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset Back     alignment and domain information
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 Back     alignment and domain information
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset Back     alignment and domain information
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) Back     alignment and domain information
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins Back     alignment and domain information
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin Back     alignment and domain information
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins Back     alignment and domain information
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin Back     alignment and domain information
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) Back     alignment and domain information
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) Back     alignment and domain information
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 Back     alignment and domain information
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins Back     alignment and domain information
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 Back     alignment and domain information
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 Back     alignment and domain information
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins Back     alignment and domain information
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins Back     alignment and domain information
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 Back     alignment and domain information
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins Back     alignment and domain information
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) Back     alignment and domain information
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) Back     alignment and domain information
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins Back     alignment and domain information
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins Back     alignment and domain information
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon Back     alignment and domain information
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 Back     alignment and domain information
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 Back     alignment and domain information
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 Back     alignment and domain information
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma Back     alignment and domain information
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 Back     alignment and domain information
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins Back     alignment and domain information
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 Back     alignment and domain information
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 Back     alignment and domain information
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 Back     alignment and domain information
>PLN02270 phospholipase D alpha Back     alignment and domain information
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene Back     alignment and domain information
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) Back     alignment and domain information
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain Back     alignment and domain information
>PLN03008 Phospholipase D delta Back     alignment and domain information
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase Back     alignment and domain information
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain Back     alignment and domain information
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 Back     alignment and domain information
>cd04041 C2A_fungal C2 domain first repeat; fungal group Back     alignment and domain information
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 Back     alignment and domain information
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 Back     alignment and domain information
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 Back     alignment and domain information
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) Back     alignment and domain information
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) Back     alignment and domain information
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins Back     alignment and domain information
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 Back     alignment and domain information
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins Back     alignment and domain information
>cd00030 C2 C2 domain Back     alignment and domain information
>cd08375 C2_Intersectin C2 domain present in Intersectin Back     alignment and domain information
>smart00239 C2 Protein kinase C conserved region 2 (CalB) Back     alignment and domain information
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 Back     alignment and domain information
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin Back     alignment and domain information
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 Back     alignment and domain information
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) Back     alignment and domain information
>cd04047 C2B_Copine C2 domain second repeat in Copine Back     alignment and domain information
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) Back     alignment and domain information
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins Back     alignment and domain information
>cd04046 C2_Calpain C2 domain present in Calpain proteins Back     alignment and domain information
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking Back     alignment and domain information
>cd08680 C2_Kibra C2 domain found in Human protein Kibra Back     alignment and domain information
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 Back     alignment and domain information
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) Back     alignment and domain information
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins Back     alignment and domain information
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins Back     alignment and domain information
>cd04032 C2_Perforin C2 domain of Perforin Back     alignment and domain information
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins Back     alignment and domain information
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) Back     alignment and domain information
>cd08677 C2A_Synaptotagmin-13 C2 domain Back     alignment and domain information
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin Back     alignment and domain information
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) Back     alignment and domain information
>cd04048 C2A_Copine C2 domain first repeat in Copine Back     alignment and domain information
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin Back     alignment and domain information
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PLN02352 phospholipase D epsilon Back     alignment and domain information
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG4278 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query518
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 68/496 (13%), Positives = 145/496 (29%), Gaps = 153/496 (30%)

Query: 91  HCHRL----NPVQYK-----SDCEELYGKNLDNSYVVSSIQGT-CRKETEEIWNRLYPEE 140
           H H +       QY+     S  E+ +  N D   V    +    ++E + I        
Sbjct: 3   HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62

Query: 141 P--YELDLAKISSEDFSAELSGLEKFTK------YD-LVSAVKRQS--P------FFYQV 183
                        E        ++KF +      Y  L+S +K +   P      +  Q 
Sbjct: 63  GTLRLFWTLLSKQE------EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116

Query: 184 SRSHFNNDVFLEEAVARYKGFLHLIKKNRE-------------------------RSIKR 218
            R + +N VF +  V+R + +L L +   E                          S K 
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 219 FCVPTYDIDLIWHT--HQLHPDSYCKDMSKTLGKVLEHDDMDQ-DRTKGKKLDTGFSGTT 275
            C   + I   W    +   P++   +M + L   ++ +   + D +   KL      + 
Sbjct: 177 QCKMDFKI--FWLNLKNCNSPET-VLEMLQKLLYQIDPNWTSRSDHSSNIKLRI---HSI 230

Query: 276 KQWEETF--GSRYPKAGAMYRGTAPSPLTTIPFSSDIVSKEVVSS--KECQKIINIPDLK 331
           +           Y              L  +    ++ + +  ++    C+ ++     +
Sbjct: 231 QAELRRLLKSKPYENC-----------LLVL---LNVQNAKAWNAFNLSCKILLTTRFKQ 276

Query: 332 IVEVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKS-GMKQVASFQC 390
           + + F+      ++  DH                      +  ++L K    +       
Sbjct: 277 VTD-FLSAATTTHISLDHHSMT--------------LTPDEVKSLLLKYLDCR------- 314

Query: 391 EATGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVS 450
               +L  E+++ +  ++ +            S+++ ++       + W        +V+
Sbjct: 315 --PQDLPREVLTTNPRRLSIIAE---------SIRDGLATW-----DNW-------KHVN 351

Query: 451 SKPISLRIAVSFTIPTLAPHLLRMVRSRPLSKSSCF-----FPLPGRIQPAKS----WTR 501
              ++  I  S  +  L P   R            F     FP    I P       W  
Sbjct: 352 CDKLTTIIESS--LNVLEPAEYR----------KMFDRLSVFPPSAHI-PTILLSLIWFD 398

Query: 502 VIDETQSEVISLQMRY 517
           VI      V++   +Y
Sbjct: 399 VIKSDVMVVVNKLHKY 414
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query518
3b7y_A153 E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- 97.8
2dmh_A140 Myoferlin; beta-sandwich, FER-1-like protein 3, mu 97.67
1v27_A141 Regulating synaptic membrane exocytosis protein 2; 97.48
2b3r_A134 Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA 97.45
2d8k_A141 Synaptotagmin VII; exocytosis, calcium binding, ly 97.4
3m7f_B176 E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 97.39
3kwu_A148 MUNC13-1; calcium binding protein, phospholipid bi 97.33
3fbk_A153 RGS3, RGP3, regulator of G-protein signaling 3; al 97.29
3n5a_A138 Synaptotagmin-7; calcium/phospholipid binding prot 97.27
3fdw_A148 Synaptotagmin-like protein 4; structural genomics, 97.25
3f04_A143 Synaptotagmin-1; C2A, calcium, cell junction, cyto 97.22
1a25_A149 CALB, protein kinase C (beta); calcium++/phospholi 97.22
1w15_A153 Synaptotagmin IV; metal binding protein, endocytos 97.19
2cm5_A166 Rabphilin-3A; protein transport, zinc-finger, Ca2+ 97.18
1wfj_A136 Putative elicitor-responsive gene; C2 domain, rike 97.13
2ep6_A133 MCTP2 protein; beta sandwich, Ca2+ binding, membra 97.12
1rlw_A126 Phospholipase A2, CALB domain; hydrolase, C2 domai 97.12
1tjx_A159 Similar to synaptotagmini/P65; C2B domain, calcium 97.06
2dmg_A142 KIAA1228 protein; beta-sandwich, structural genomi 97.05
3pyc_A132 E3 ubiquitin-protein ligase smurf1; phospholipid b 97.03
2q3x_A171 Regulating synaptic membrane exocytosis protein 1; 97.03
2enp_A147 B/K protein; C2 type 1,beta sandwich, structural g 97.02
3rdl_A137 Protein kinase C alpha type; protein kinase PKC, t 97.02
1rsy_A152 Synaptotagmin I; calcium/phospholipid binding prot 96.98
1gmi_A136 Protein kinase C, epsilon type; PKC, C2 domain, X- 96.96
2bwq_A129 Regulating synaptic membrane exocytosis protein 2; 96.92
2r83_A284 Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel 96.88
1ugk_A138 Synaptotagmin IV, KIAA1342; beta sandwich, structu 96.85
2nq3_A173 Itchy homolog E3 ubiquitin protein ligase; C2 doma 96.81
1rh8_A142 Piccolo protein; beta-sandwich, metal binding prot 96.67
2fk9_A157 Protein kinase C, ETA type; ATP-binding, metal-bin 96.63
2z0u_A155 WW domain-containing protein 1; C2 domain, alterna 96.53
2chd_A142 Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium 96.28
2r83_A284 Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel 96.13
1wfm_A138 Synaptotagmin XIII; C2 domain, exocytosis, neurotr 95.82
1dqv_A296 Synaptotagmin III; beta sandwich, calcium ION, C2 95.2
2cjt_A131 UNC-13 homolog A, MUNC13-1; phorbol-ester binding, 94.54
1dqv_A296 Synaptotagmin III; beta sandwich, calcium ION, C2 94.26
3jzy_A510 Intersectin 2; C2 domain, structural genomics cons 92.51
2cjs_A167 UNC-13 homolog A, MUNC13-1; neurotransmitter trans 92.47
3l9b_A144 Otoferlin; C2-domain, beta-sheets, cell membrane, 90.86
1cjy_A 749 CPLA2, protein (cytosolic phospholipase A2); lipid 89.09
1djx_A624 PLC-D1, phosphoinositide-specific phospholipase C, 87.33
3bxj_A 483 RAS GTPase-activating protein syngap; GTPase activ 86.61
3nsj_A540 Perforin-1; pore forming protein, immune system; H 86.01
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Back     alignment and structure
Probab=97.80  E-value=0.00031  Score=62.59  Aligned_cols=125  Identities=20%  Similarity=0.203  Sum_probs=82.3

Q ss_pred             EEEEEEEeecCCCCCcC-CCCceEEEEeccC-CCcccccccceee--eeccccceeEEEEee-ccccEEEEEEecCCCCc
Q 010104          334 EVFVEIVAVKNLPEDHK-DKGDLFVFFSKSQ-PDIFFNAKQKLTI--LSKSGMKQVASFQCE-ATGELLFELVSHSTSKI  408 (518)
Q Consensus       334 ev~l~iv~~~nl~~~~~-~~~~lfVr~~~~q-~d~~~~~~~~~~i--~s~s~~~~~~~l~CE-~t~~lv~elr~~~~~~l  408 (518)
                      .+.|.|++++||+.... ...+-||.++... .+......++-.+  +.++.|++.+.|... ....|.|++.-+..   
T Consensus        21 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~d~---   97 (153)
T 3b7y_A           21 IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENR---   97 (153)
T ss_dssp             EEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEECCS---
T ss_pred             EEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEECCC---
Confidence            47788899999985421 2357899998652 2210110111111  456799999999887 45689999887643   


Q ss_pred             cCCCCcccceeEEeecccccCCCCCc--e-EEEEEeeccCCCCCCCCCceEEEEEeecC
Q 010104          409 PMTGASKTMGTASLSLQNFISPISKL--A-VEQWFDLVPRSGNVSSKPISLRIAVSFTI  464 (518)
Q Consensus       409 ~~~~~sk~lG~~s~~w~dll~~~~~L--s-~E~w~~l~~~~~~~~~~p~~lrva~S~Tp  464 (518)
                        +++...||.++|+++++.......  . .++|+.|.+.++ .+...=.|+|.+++.|
T Consensus        98 --~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~-~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           98 --LTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSH-KSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             --SSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSST-TCCCCSEEEEEEEECC
T ss_pred             --CcCCCeeEEEEEEHHHcccCCCcccccccccccccccccC-CCCcceEEEEEEEEeC
Confidence              567889999999999998754321  2 259999988753 2233458888888776
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Back     alignment and structure
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Back     alignment and structure
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Back     alignment and structure
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* Back     alignment and structure
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 Back     alignment and structure
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Back     alignment and structure
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Back     alignment and structure
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Back     alignment and structure
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Back     alignment and structure
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Back     alignment and structure
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Back     alignment and structure
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Back     alignment and structure
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Back     alignment and structure
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Back     alignment and structure
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Back     alignment and structure
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Back     alignment and structure
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Back     alignment and structure
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Back     alignment and structure
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Back     alignment and structure
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Back     alignment and structure
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Back     alignment and structure
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Back     alignment and structure
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Back     alignment and structure
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Back     alignment and structure
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Back     alignment and structure
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Back     alignment and structure
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Back     alignment and structure
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Back     alignment and structure
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Back     alignment and structure
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Back     alignment and structure
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Back     alignment and structure
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Back     alignment and structure
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Back     alignment and structure
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Back     alignment and structure
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Back     alignment and structure
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Back     alignment and structure
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Back     alignment and structure
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Back     alignment and structure
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query518
d1gmia_136 Domain from protein kinase C epsilon {Rat (Rattus 97.84
d1uowa_157 Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 97.61
d2cjta1128 Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 97.56
d1wfma_138 Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 97.53
d2cm5a1137 C2b-domain of rabphilin {Rat (Rattus norvegicus) [ 97.28
d1rsya_143 Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 97.21
d1w15a_138 Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 97.16
d1wfja_136 C2 domain protein At1g63220 {Thale cress (Arabidop 97.13
d1dqva1130 Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 97.13
d1a25a_132 C2 domain from protein kinase c (beta) {Rat (Rattu 97.11
d1rlwa_126 Domain from cytosolic phospholipase A2 {Human (Hom 97.11
d2bwqa1125 Regulating synaptic membrane exocytosis protein, r 97.08
d2ep6a1126 Multiple C2 and transmembrane domain-containing pr 96.84
d1qasa2131 PI-specific phospholipase C isozyme D1 (PLC-D1), C 96.78
d1dqva2145 Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 96.76
d1ugka_138 Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 96.63
d2nq3a1133 E3 ubiquitin-protein ligase Itchy {Human (Homo sap 96.58
d1rh8a_142 Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} 96.52
d1bdya_123 Domain from protein kinase C delta {Rat (Rattus no 81.52
>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Back     information, alignment and structure
class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=97.84  E-value=9.2e-05  Score=63.70  Aligned_cols=114  Identities=9%  Similarity=0.158  Sum_probs=78.3

Q ss_pred             EEEEEEeecCCCCC------------cCCCCceEEEEeccCCCcccccccceeeeeccccceeEEEEeeccccEEEEEEe
Q 010104          335 VFVEIVAVKNLPED------------HKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEATGELLFELVS  402 (518)
Q Consensus       335 v~l~iv~~~nl~~~------------~~~~~~lfVr~~~~q~d~~~~~~~~~~i~s~s~~~~~~~l~CE~t~~lv~elr~  402 (518)
                      +.|.|++++||+..            .....+-||.++..  +..+.-.....=+.++.|++.+.|.++....+.|++..
T Consensus         8 L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~--~~~~~~T~~~~~t~~P~Wne~f~f~v~~~~~l~i~V~d   85 (136)
T d1gmia_           8 LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD--DSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIELAVFH   85 (136)
T ss_dssp             EEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEET--TEEEEECCCCSSCSSCEEEEEEEEEEEEECEEEEEEEE
T ss_pred             EEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeC--CCcCcEeeEEcCCCCccCccEEEEEEecCCceEEEEEE
Confidence            67889999999742            11123468888753  11111000111145679999999999877788899886


Q ss_pred             cCCCCccCCCCcccceeEEeecccccCCCCCceEEEEEeeccCCCCCCCCCceEEEEEeecC
Q 010104          403 HSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTI  464 (518)
Q Consensus       403 ~~~~~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~~~~~p~~lrva~S~Tp  464 (518)
                      +..     +.+.++||.++|++.+++.. .....+.|++|.|.        =.++|-+++||
T Consensus        86 ~~~-----~~~d~~iG~~~i~l~~l~~~-~~~~~~~w~~L~p~--------G~v~l~v~~~~  133 (136)
T d1gmia_          86 DAP-----IGYDDFVANCTIQFEELLQN-GSRHFEDWIDLEPE--------GKVYVIIDLSG  133 (136)
T ss_dssp             CCS-----SSSCEEEEEEEEEHHHHTST-TCSEEEEEEECBSS--------CEEEEEEEEEE
T ss_pred             ecC-----CCCceeEEEEEEEHHHhhhc-CCcceeEEEeCCCC--------cEEEEEEEEEe
Confidence            553     56778999999999999986 46778999999763        13566666654
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure