Query 010105
Match_columns 518
No_of_seqs 233 out of 391
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 21:06:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010105.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010105hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07173 DUF1399: Protein of u 100.0 5.6E-36 1.2E-40 273.7 8.0 135 99-243 1-136 (136)
2 PF07173 DUF1399: Protein of u 99.9 2E-22 4.4E-27 184.5 6.2 81 16-103 56-136 (136)
3 COG4278 Uncharacterized conser 98.7 1.3E-08 2.8E-13 99.9 5.8 91 190-284 56-146 (269)
4 cd04013 C2_SynGAP_like C2 doma 98.2 2E-05 4.4E-10 73.5 12.3 124 330-465 8-141 (146)
5 cd04042 C2A_MCTP_PRT C2 domain 98.0 0.00011 2.3E-09 65.1 12.6 117 334-464 1-121 (121)
6 cd08678 C2_C21orf25-like C2 do 97.9 0.00019 4.1E-09 64.1 12.6 121 336-469 2-126 (126)
7 cd08400 C2_Ras_p21A1 C2 domain 97.9 0.00022 4.7E-09 64.0 12.6 119 333-464 4-124 (126)
8 cd04016 C2_Tollip C2 domain pr 97.6 0.00084 1.8E-08 60.6 11.7 114 335-461 4-120 (121)
9 cd08682 C2_Rab11-FIP_classI C2 97.6 0.0007 1.5E-08 60.3 11.1 104 335-447 1-112 (126)
10 cd04015 C2_plant_PLD C2 domain 97.6 0.0012 2.6E-08 61.9 12.6 98 353-463 58-158 (158)
11 cd04050 C2B_Synaptotagmin-like 97.4 0.0015 3.2E-08 56.5 10.0 99 335-445 2-103 (105)
12 cd04019 C2C_MCTP_PRT_plant C2 97.4 0.0025 5.5E-08 59.3 12.0 121 335-464 2-133 (150)
13 cd08409 C2B_Synaptotagmin-15 C 97.2 0.0015 3.3E-08 59.6 8.8 101 335-442 17-136 (137)
14 cd04043 C2_Munc13_fungal C2 do 97.2 0.0072 1.6E-07 53.5 12.1 104 335-444 3-110 (126)
15 cd08373 C2A_Ferlin C2 domain f 97.1 0.0084 1.8E-07 53.4 12.0 114 339-466 2-119 (127)
16 cd08379 C2D_MCTP_PRT_plant C2 97.1 0.0087 1.9E-07 54.4 12.0 118 335-458 2-125 (126)
17 cd08685 C2_RGS-like C2 domain 97.1 0.0029 6.3E-08 56.5 8.7 101 335-442 14-119 (119)
18 cd08688 C2_KIAA0528-like C2 do 97.1 0.0037 8E-08 54.5 9.0 99 336-444 2-109 (110)
19 cd08385 C2A_Synaptotagmin-1-5- 97.0 0.0056 1.2E-07 54.1 10.0 98 335-443 18-123 (124)
20 cd08681 C2_fungal_Inn1p-like C 97.0 0.008 1.7E-07 52.6 10.7 99 335-446 3-106 (118)
21 cd08382 C2_Smurf-like C2 domai 97.0 0.012 2.7E-07 52.3 12.0 105 334-448 1-109 (123)
22 cd04031 C2A_RIM1alpha C2 domai 97.0 0.0066 1.4E-07 53.4 10.1 99 335-442 18-124 (125)
23 cd04033 C2_NEDD4_NEDD4L C2 dom 97.0 0.013 2.9E-07 52.2 12.2 122 335-462 2-132 (133)
24 cd08378 C2B_MCTP_PRT_plant C2 97.0 0.0076 1.7E-07 53.8 10.4 99 335-447 2-106 (121)
25 cd04029 C2A_SLP-4_5 C2 domain 97.0 0.0075 1.6E-07 54.1 10.4 100 335-443 17-125 (125)
26 cd04022 C2A_MCTP_PRT_plant C2 96.9 0.011 2.5E-07 52.6 11.3 116 335-463 2-126 (127)
27 cd08376 C2B_MCTP_PRT C2 domain 96.9 0.015 3.3E-07 50.6 11.8 103 335-448 2-107 (116)
28 cd04028 C2B_RIM1alpha C2 domai 96.8 0.016 3.5E-07 54.0 11.9 105 335-448 31-142 (146)
29 cd04011 C2B_Ferlin C2 domain s 96.8 0.013 2.9E-07 51.0 10.4 98 334-444 5-110 (111)
30 cd08394 C2A_Munc13 C2 domain f 96.8 0.0089 1.9E-07 54.8 9.3 98 335-445 4-102 (127)
31 cd00276 C2B_Synaptotagmin C2 d 96.8 0.0025 5.4E-08 56.6 5.6 102 335-446 16-124 (134)
32 cd08381 C2B_PI3K_class_II C2 d 96.7 0.012 2.5E-07 52.7 9.7 99 335-442 15-121 (122)
33 cd04036 C2_cPLA2 C2 domain pre 96.7 0.027 5.9E-07 49.5 11.9 100 335-445 2-106 (119)
34 cd08387 C2A_Synaptotagmin-8 C2 96.7 0.015 3.2E-07 51.5 10.2 98 335-443 18-123 (124)
35 cd04044 C2A_Tricalbin-like C2 96.7 0.024 5.3E-07 49.6 11.1 116 335-464 4-124 (124)
36 cd08393 C2A_SLP-1_2 C2 domain 96.7 0.015 3.2E-07 52.1 9.9 100 334-442 16-124 (125)
37 cd08388 C2A_Synaptotagmin-4-11 96.6 0.021 4.5E-07 51.5 10.7 102 335-444 18-128 (128)
38 cd04030 C2C_KIAA1228 C2 domain 96.6 0.016 3.5E-07 51.2 9.6 102 335-443 18-127 (127)
39 cd04024 C2A_Synaptotagmin-like 96.6 0.033 7.2E-07 49.1 11.6 106 335-448 3-113 (128)
40 cd08392 C2A_SLP-3 C2 domain fi 96.6 0.02 4.3E-07 51.9 10.3 102 335-442 17-127 (128)
41 cd04051 C2_SRC2_like C2 domain 96.6 0.026 5.7E-07 49.9 10.7 105 335-447 2-117 (125)
42 cd04010 C2B_RasA3 C2 domain se 96.6 0.02 4.4E-07 53.4 10.2 104 335-447 2-125 (148)
43 cd08675 C2B_RasGAP C2 domain s 96.6 0.02 4.3E-07 52.4 10.0 104 336-448 2-124 (137)
44 cd04040 C2D_Tricalbin-like C2 96.5 0.028 6.1E-07 48.8 10.6 103 336-448 2-107 (115)
45 cd04045 C2C_Tricalbin-like C2 96.5 0.015 3.3E-07 51.8 8.9 103 335-448 3-107 (120)
46 cd04014 C2_PKC_epsilon C2 doma 96.5 0.039 8.3E-07 49.5 11.5 103 335-445 6-119 (132)
47 cd08408 C2B_Synaptotagmin-14_1 96.5 0.018 3.9E-07 52.8 9.5 102 335-442 17-137 (138)
48 cd08402 C2B_Synaptotagmin-1 C2 96.5 0.013 2.9E-07 52.8 8.4 85 335-425 17-109 (136)
49 cd08406 C2B_Synaptotagmin-12 C 96.5 0.02 4.3E-07 52.6 9.4 101 335-442 17-135 (136)
50 cd04026 C2_PKC_alpha_gamma C2 96.4 0.021 4.5E-07 51.0 9.4 105 335-448 15-125 (131)
51 cd08389 C2A_Synaptotagmin-14_1 96.4 0.026 5.7E-07 50.5 9.9 100 335-444 18-124 (124)
52 cd08391 C2A_C2C_Synaptotagmin_ 96.4 0.041 8.8E-07 47.9 10.9 99 335-445 3-110 (121)
53 cd08386 C2A_Synaptotagmin-7 C2 96.4 0.029 6.2E-07 49.6 10.0 100 334-444 17-125 (125)
54 cd08390 C2A_Synaptotagmin-15-1 96.3 0.049 1.1E-06 47.8 10.6 99 335-444 16-123 (123)
55 cd08403 C2B_Synaptotagmin-3-5- 96.2 0.026 5.6E-07 50.8 8.7 101 335-445 16-123 (134)
56 PLN02270 phospholipase D alpha 96.2 0.032 7E-07 64.5 11.3 128 335-475 10-160 (808)
57 cd04049 C2_putative_Elicitor-r 96.2 0.03 6.6E-07 49.5 8.8 100 335-446 3-110 (124)
58 cd08383 C2A_RasGAP C2 domain ( 96.2 0.094 2E-06 45.5 11.7 111 335-461 2-116 (117)
59 cd04035 C2A_Rabphilin_Doc2 C2 96.2 0.046 9.9E-07 48.3 9.8 90 335-430 17-114 (123)
60 PLN03008 Phospholipase D delta 96.1 0.045 9.7E-07 63.6 11.8 110 353-475 77-189 (868)
61 cd04021 C2_E3_ubiquitin_ligase 96.0 0.057 1.2E-06 48.3 9.9 104 334-446 3-110 (125)
62 cd08384 C2B_Rabphilin_Doc2 C2 96.0 0.057 1.2E-06 48.3 9.8 100 335-445 15-122 (133)
63 cd08405 C2B_Synaptotagmin-7 C2 95.9 0.054 1.2E-06 48.8 9.3 87 335-427 17-111 (136)
64 cd04041 C2A_fungal C2 domain f 95.9 0.055 1.2E-06 47.2 8.9 98 335-443 3-107 (111)
65 cd04020 C2B_SLP_1-2-3-4 C2 dom 95.8 0.05 1.1E-06 51.3 9.1 102 335-444 29-138 (162)
66 cd04025 C2B_RasA1_RasA4 C2 dom 95.8 0.14 3.1E-06 45.1 11.5 102 335-447 2-106 (123)
67 cd08404 C2B_Synaptotagmin-4 C2 95.8 0.076 1.6E-06 47.9 9.8 100 334-444 16-123 (136)
68 cd08377 C2C_MCTP_PRT C2 domain 95.8 0.19 4.1E-06 43.8 11.9 99 335-446 3-103 (119)
69 cd00275 C2_PLC_like C2 domain 95.8 0.29 6.2E-06 43.0 13.1 104 333-448 2-114 (128)
70 cd08521 C2A_SLP C2 domain firs 95.7 0.091 2E-06 46.0 9.6 99 335-442 16-123 (123)
71 cd04054 C2A_Rasal1_RasA4 C2 do 95.6 0.18 4E-06 44.6 11.4 115 335-461 2-120 (121)
72 cd08395 C2C_Munc13 C2 domain t 95.6 0.15 3.3E-06 46.0 10.9 102 335-445 2-113 (120)
73 cd00030 C2 C2 domain. The C2 d 95.6 0.082 1.8E-06 42.3 8.2 95 336-441 2-101 (102)
74 cd08375 C2_Intersectin C2 doma 95.4 0.33 7.1E-06 44.3 12.5 115 334-462 16-135 (136)
75 smart00239 C2 Protein kinase C 95.4 0.14 3E-06 41.4 9.0 90 335-430 2-95 (101)
76 cd08407 C2B_Synaptotagmin-13 C 95.3 0.12 2.5E-06 47.8 9.2 100 335-441 17-136 (138)
77 cd04017 C2D_Ferlin C2 domain f 95.2 0.41 8.9E-06 43.2 12.2 115 334-462 2-131 (135)
78 cd08401 C2A_RasA2_RasA3 C2 dom 95.1 0.47 1E-05 42.3 12.4 101 335-445 2-105 (121)
79 cd08690 C2_Freud-1 C2 domain f 95.1 0.28 6E-06 46.4 11.3 101 335-444 4-121 (155)
80 cd04047 C2B_Copine C2 domain s 95.0 0.16 3.6E-06 43.8 8.9 94 337-437 4-107 (110)
81 cd08691 C2_NEDL1-like C2 domai 95.0 0.34 7.4E-06 44.6 11.3 108 336-445 4-122 (137)
82 cd04027 C2B_Munc13 C2 domain s 95.0 0.7 1.5E-05 41.3 13.1 103 334-446 2-114 (127)
83 cd04046 C2_Calpain C2 domain p 95.0 0.7 1.5E-05 41.2 13.0 116 335-464 5-123 (126)
84 PF00168 C2: C2 domain; Inter 94.9 0.2 4.2E-06 39.9 8.4 79 335-421 1-85 (85)
85 cd08680 C2_Kibra C2 domain fou 94.9 0.16 3.5E-06 45.9 8.7 100 335-442 16-124 (124)
86 cd08410 C2B_Synaptotagmin-17 C 94.6 0.21 4.5E-06 45.3 8.8 84 335-423 16-106 (135)
87 cd04038 C2_ArfGAP C2 domain pr 94.6 0.25 5.4E-06 45.9 9.4 91 335-434 4-95 (145)
88 cd04009 C2B_Munc13-like C2 dom 94.6 0.25 5.4E-06 44.5 9.2 91 335-430 18-119 (133)
89 cd08676 C2A_Munc13-like C2 dom 94.3 0.3 6.5E-06 45.9 9.4 97 332-442 27-153 (153)
90 cd04032 C2_Perforin C2 domain 94.2 0.41 8.9E-06 43.6 9.7 92 330-429 25-119 (127)
91 cd04052 C2B_Tricalbin-like C2 94.0 0.15 3.3E-06 44.5 6.4 73 378-464 36-110 (111)
92 cd04039 C2_PSD C2 domain prese 93.9 0.36 7.8E-06 42.4 8.5 88 335-430 3-98 (108)
93 cd08677 C2A_Synaptotagmin-13 C 93.2 0.68 1.5E-05 41.9 9.3 97 334-442 15-118 (118)
94 cd04037 C2E_Ferlin C2 domain f 92.9 0.8 1.7E-05 40.9 9.3 87 335-429 2-93 (124)
95 cd08692 C2B_Tac2-N C2 domain s 92.9 0.58 1.3E-05 43.3 8.5 101 335-445 16-124 (135)
96 cd04048 C2A_Copine C2 domain f 90.7 4.2 9.2E-05 35.7 11.2 104 339-447 6-117 (120)
97 cd04018 C2C_Ferlin C2 domain t 90.1 2.6 5.6E-05 39.6 9.7 88 335-430 2-107 (151)
98 cd08686 C2_ABR C2 domain in th 89.4 7.7 0.00017 35.2 11.9 84 336-424 2-90 (118)
99 PLN03200 cellulose synthase-in 88.5 2.4 5.3E-05 54.2 10.6 111 335-458 1982-2097(2102)
100 PLN02352 phospholipase D epsil 88.2 1.2 2.6E-05 51.7 7.3 105 354-476 37-143 (758)
101 KOG1028 Ca2+-dependent phospho 84.5 4.2 9.1E-05 44.3 8.8 103 335-444 300-420 (421)
102 COG4278 Uncharacterized conser 83.0 4.5 9.8E-05 40.9 7.5 193 51-255 59-265 (269)
103 KOG1028 Ca2+-dependent phospho 77.2 37 0.0008 37.1 12.9 105 333-448 167-279 (421)
104 PF10358 NT-C2: N-terminal C2 40.6 2.7E+02 0.0058 24.9 12.5 116 333-463 7-135 (143)
105 KOG0696 Serine/threonine prote 28.5 1E+02 0.0022 34.4 5.3 99 335-443 182-287 (683)
106 cd08374 C2F_Ferlin C2 domain s 26.8 5E+02 0.011 24.0 9.0 29 334-362 1-34 (133)
107 PF15627 CEP76-C2: CEP76 C2 do 23.5 1.8E+02 0.0039 27.8 5.5 59 387-446 53-133 (156)
108 cd08683 C2_C2cd3 C2 domain fou 22.4 68 0.0015 30.2 2.4 47 393-441 91-142 (143)
109 KOG2059 Ras GTPase-activating 21.1 97 0.0021 36.2 3.7 119 334-467 6-129 (800)
No 1
>PF07173 DUF1399: Protein of unknown function (DUF1399); InterPro: IPR009836 This family represents a conserved region approximately 150 residues long within a number of hypothetical plant proteins of unknown function.
Probab=100.00 E-value=5.6e-36 Score=273.74 Aligned_cols=135 Identities=45% Similarity=0.845 Sum_probs=123.6
Q ss_pred hHHHHHHHHhCCcCCCCCcCcccccc-chhhhHHHhhhhCCCCCccccccccccccchhcccccccchhchHHHHHHhhh
Q 010105 99 QYKSDCEELYGKNLDNSYVVSSIQGT-CRKETEEIWNRLYPEEPYELDLAKISSEDFSAELSGLEKFTKYDLVSAVKRQS 177 (518)
Q Consensus 99 ~Y~~~C~~~~g~~id~~~~~~~~~~~-~~~~~~~~W~~~yP~epf~~~~~~~~~~~i~~~~~~~~~~~~~DLv~aV~RQ~ 177 (518)
+|++||+++|||+|+++.+.+..++. +..+++++|+..||.|||+++...... .+...++++||++||+||+
T Consensus 1 ~Y~~~C~~~~grii~~~~~~~~~~~~~a~~~~~~~w~~~~p~e~~~~~~~~~~~-------~~~~~~~~~DLv~av~Rq~ 73 (136)
T PF07173_consen 1 SYRKDCERRFGRIIDHPSISDSINEVYAKNRCRKIWQARYPREPFDLNLISMTV-------WSNGIPISYDLVAAVKRQS 73 (136)
T ss_pred ChHHHHHHHhchhcCCCchhHHHHHHHHHhhhHHHHHHhCCCchHhhhhhhccc-------ccccccchHHHHHHHHHHH
Confidence 59999999999999999999988888 899999999999999999987766554 1225679999999999999
Q ss_pred HHHHHhccCCCCcHHHHHHHHHHHHHhHHhhhhcccccccccccCchhHHHHHhhcccChhhHHHH
Q 010105 178 PFFYQVSRSHFNNDVFLEEAVARYKGFLHLIKKNRERSIKRFCVPTYDIDLIWHTHQLHPDSYCKD 243 (518)
Q Consensus 178 ~F~~~v~~P~~~d~~~L~rAi~RYk~FL~L~~~~p~~~~~~~LVPTlDIDLvWHTHqL~p~~Y~~d 243 (518)
.|+++|++|++.+..||.+|+.||++||.|++.++++ .+||||+|||||||||||+|..|++|
T Consensus 74 ~F~~~~~~p~~~~~~~l~~A~~RY~~Fl~l~~~~~~~---~~lVPtlDIdLvWHTHqL~p~~Y~~D 136 (136)
T PF07173_consen 74 SFVYKMSSPHLSETVFLERAIRRYKRFLDLLKKYPDK---SFLVPTLDIDLVWHTHQLNPVSYRED 136 (136)
T ss_pred HHHHHHccHhhcCcHHHHHHHHHHHHHHHHHHhCCCC---CCCCChHHHHHHHHHhccCchhccCC
Confidence 9999999999999999999999999999999999864 57999999999999999999999876
No 2
>PF07173 DUF1399: Protein of unknown function (DUF1399); InterPro: IPR009836 This family represents a conserved region approximately 150 residues long within a number of hypothetical plant proteins of unknown function.
Probab=99.86 E-value=2e-22 Score=184.49 Aligned_cols=81 Identities=44% Similarity=0.684 Sum_probs=75.2
Q ss_pred hccceechhhHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhHHHHhhccCCcCCCccccCCcchhHHHHHhcc
Q 010105 16 AQEIEISVDDLVAAAKQQLQFLAAVDRNRWLYEGPALQRAIYRYNACWLPLLAKHSESHISKGCLVVPLDCEWIWHCHRL 95 (518)
Q Consensus 16 a~~i~~~~D~Lv~a~~rq~~Fl~~~d~~~wL~~~~~l~~Ai~RY~~~wl~lla~~~~~~~~~~~lvPPLDV~lvWH~H~L 95 (518)
+.+++|++| ||+||+||..|+.+|+ .++++++.+|.+|+.||++ |+.|+++++++ .++||||||+||||||||
T Consensus 56 ~~~~~~~~D-Lv~av~Rq~~F~~~~~-~p~~~~~~~l~~A~~RY~~-Fl~l~~~~~~~----~~lVPtlDIdLvWHTHqL 128 (136)
T PF07173_consen 56 SNGIPISYD-LVAAVKRQSSFVYKMS-SPHLSETVFLERAIRRYKR-FLDLLKKYPDK----SFLVPTLDIDLVWHTHQL 128 (136)
T ss_pred cccccchHH-HHHHHHHHHHHHHHHc-cHhhcCcHHHHHHHHHHHH-HHHHHHhCCCC----CCCCChHHHHHHHHHhcc
Confidence 578999999 9999999999999999 7889999999999999999 79999998752 589999999999999999
Q ss_pred ChhhHHHH
Q 010105 96 NPVQYKSD 103 (518)
Q Consensus 96 nP~~Y~~~ 103 (518)
+|..|.+|
T Consensus 129 ~p~~Y~~D 136 (136)
T PF07173_consen 129 NPVSYRED 136 (136)
T ss_pred CchhccCC
Confidence 99999875
No 3
>COG4278 Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=1.3e-08 Score=99.90 Aligned_cols=91 Identities=24% Similarity=0.296 Sum_probs=79.2
Q ss_pred cHHHHHHHHHHHHHhHHhhhhcccccccccccCchhHHHHHhhcccChhhHHHHHHhHhCccccCCCcccccccccchhh
Q 010105 190 NDVFLEEAVARYKGFLHLIKKNRERSIKRFCVPTYDIDLIWHTHQLHPDSYCKDMSKTLGKVLEHDDMDQDRTKGKKLDT 269 (518)
Q Consensus 190 d~~~L~rAi~RYk~FL~L~~~~p~~~~~~~LVPTlDIDLvWHTHqL~p~~Y~~dc~~~~Gr~I~Hdd~~~~~~e~~kL~~ 269 (518)
+....++.++.|++|+.|....+. .+..|+-.||++||-|+|+++-|.++|.+.+|+.+||++....+.+.++-+.
T Consensus 56 s~e~a~qve~e~R~F~~L~iaagk----~v~tpS~~VD~~WH~lIlhTReye~fcs~vlg~plhh~p~l~~~~~nq~~~~ 131 (269)
T COG4278 56 SRELAEQVEKELRRFVLLTIAAGK----RVFTPSGVVDLYWHELILHTREYEKFCSSVLGIPLHHNPLLAKLLNNQDNSF 131 (269)
T ss_pred cHHHHHHHHHHHHHHhhhhhhcCc----cccChhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccChhhhcccCCCchhH
Confidence 345788999999999999887763 4678999999999999999999999999999999999999876666677888
Q ss_pred hHHHHHHHHHHHhCC
Q 010105 270 GFSGTTKQWEETFGS 284 (518)
Q Consensus 270 ~f~~T~~lwe~~FGe 284 (518)
++.+|.+.+...+|.
T Consensus 132 ~lr~tlk~~~r~e~I 146 (269)
T COG4278 132 GLRRTLKPACRNEGI 146 (269)
T ss_pred HHHHhcchhhhcccc
Confidence 999999988877773
No 4
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=98.20 E-value=2e-05 Score=73.48 Aligned_cols=124 Identities=16% Similarity=0.247 Sum_probs=89.1
Q ss_pred ceEEEEEEEEEeecCCCCCcCCCCceEEEEeccCCCcccccccceee--eeccccceeEEEEee-ccccEEEEEEecCCC
Q 010105 330 LKIVEVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-ATGELLFELVSHSTS 406 (518)
Q Consensus 330 ~~~~ev~l~iv~~~nl~~~~~~~~~lfVr~~~~q~d~~~~~~~~~~i--~s~s~~~~~~~l~CE-~t~~lv~elr~~~~~ 406 (518)
|..--+.|.|++|||+|... +.|+.+..-+- .+ .|+..+ +..+.|.+-|+|.|- +...+.|.|..+...
T Consensus 8 R~~~sL~v~V~EAk~Lp~~~----~~Y~~i~Ld~~--~v--aRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~ 79 (146)
T cd04013 8 RTENSLKLWIIEAKGLPPKK----RYYCELCLDKT--LY--ARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDK 79 (146)
T ss_pred EEEEEEEEEEEEccCCCCcC----CceEEEEECCE--EE--EEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCc
Confidence 44455788999999998643 68999875531 11 122222 345699999999999 567899999655443
Q ss_pred CccCCCCcccceeEEeecccccCCCCCceEEEEEeeccCCCCC-------CCCCceEEEEEeecCC
Q 010105 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNV-------SSKPISLRIAVSFTIP 465 (518)
Q Consensus 407 ~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~~-------~~~p~~lrva~S~Tpp 465 (518)
. +...+..+||++.|+..++.. .-.+|+||+|.+.++.. -....+|||-+.+++=
T Consensus 80 ~-~~~~~~~~IG~V~Ip~~~l~~---~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 80 K-KKKDKSQLIGTVNIPVTDVSS---RQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred c-ccccCCcEEEEEEEEHHHhcC---CCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 2 123478999999999999983 67899999998776553 1334799999988763
No 5
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=98.02 E-value=0.00011 Score=65.06 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=84.1
Q ss_pred EEEEEEEeecCCCCCcC-CCCceEEEEeccCCCcccccccceee--eeccccceeEEEEee-ccccEEEEEEecCCCCcc
Q 010105 334 EVFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-ATGELLFELVSHSTSKIP 409 (518)
Q Consensus 334 ev~l~iv~~~nl~~~~~-~~~~lfVr~~~~q~d~~~~~~~~~~i--~s~s~~~~~~~l~CE-~t~~lv~elr~~~~~~l~ 409 (518)
|+.|.|++++|++.... ...+-||+++... .... ++-.+ +.++.|++.+.|.+. +...+.||+.-+..
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~-~~~~---kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~---- 72 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGG-KTVY---KSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDR---- 72 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECC-EEEE---EeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCC----
Confidence 47788999999985422 2356799887532 1111 11112 456799999999987 57789999887654
Q ss_pred CCCCcccceeEEeecccccCCCCCceEEEEEeeccCCCCCCCCCceEEEEEeecC
Q 010105 410 MTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTI 464 (518)
Q Consensus 410 ~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~~~~~p~~lrva~S~Tp 464 (518)
+++...||.+.|+++++.. .-..|.|++|...++ ..+.=.|++.+++||
T Consensus 73 -~~~~~~iG~~~~~l~~l~~---~~~~~~~~~L~~~~~--~~~~G~l~l~~~~~~ 121 (121)
T cd04042 73 -GLTDDFMGSAFVDLSTLEL---NKPTEVKLKLEDPNS--DEDLGYISLVVTLTP 121 (121)
T ss_pred -CCCCcceEEEEEEHHHcCC---CCCeEEEEECCCCCC--ccCceEEEEEEEECC
Confidence 4567899999999999985 345899999987655 234558888888887
No 6
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=97.92 E-value=0.00019 Score=64.09 Aligned_cols=121 Identities=20% Similarity=0.258 Sum_probs=88.6
Q ss_pred EEEEEeecCCCCCcCCCCceEEEEeccCCCcccccccceee---eeccccceeEEEEeec-cccEEEEEEecCCCCccCC
Q 010105 336 FVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA-TGELLFELVSHSTSKIPMT 411 (518)
Q Consensus 336 ~l~iv~~~nl~~~~~~~~~lfVr~~~~q~d~~~~~~~~~~i---~s~s~~~~~~~l~CE~-t~~lv~elr~~~~~~l~~~ 411 (518)
.|.+++++||+. .....+-||.++...+.... +..+ +.++.|++.+.|...+ ...|.|++.-+.. .
T Consensus 2 ~v~v~~A~~L~~-~~g~~dpyv~v~~~~~~~~~----kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~-----~ 71 (126)
T cd08678 2 LVKNIKANGLSE-AAGSSNPYCVLEMDEPPQKY----QSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGK-----K 71 (126)
T ss_pred EEEEEEecCCCC-CCCCcCCEEEEEECCCCcEE----EeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCC-----C
Confidence 578999999987 33456779988865322111 2222 3467999999999874 6789999886554 3
Q ss_pred CCcccceeEEeecccccCCCCCceEEEEEeeccCCCCCCCCCceEEEEEeecCCcchh
Q 010105 412 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTIPTLAP 469 (518)
Q Consensus 412 ~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~~~~~p~~lrva~S~TppvqAp 469 (518)
++.+.||.+.|+.+++... -..+.|+.|.++++......=+|++.+.+++|-.+|
T Consensus 72 ~~~~~lG~~~i~l~~l~~~---~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~~~ 126 (126)
T cd08678 72 SDSKFLGLAIVPFDELRKN---PSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPAELP 126 (126)
T ss_pred CCCceEEEEEEeHHHhccC---CceeEEEEecCCCCCCCCcceEEEEEEEEeccccCC
Confidence 5789999999999999964 234789999987654334456999999999997665
No 7
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=97.90 E-value=0.00022 Score=64.04 Aligned_cols=119 Identities=13% Similarity=0.192 Sum_probs=82.7
Q ss_pred EEEEEEEEeecCCCCCcCCCCceEEEEeccCCCcccccccceeeeeccccceeEEEEeecc--ccEEEEEEecCCCCccC
Q 010105 333 VEVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEAT--GELLFELVSHSTSKIPM 410 (518)
Q Consensus 333 ~ev~l~iv~~~nl~~~~~~~~~lfVr~~~~q~d~~~~~~~~~~i~s~s~~~~~~~l~CE~t--~~lv~elr~~~~~~l~~ 410 (518)
-.+.|.|++++|||... ..+-||.++...- ... +.++.=..++.|++.+.|.+.+. ..+.+++.....
T Consensus 4 ~~L~V~Vi~A~~L~~~~--~~DPYv~v~l~~~-~~~--kT~v~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~----- 73 (126)
T cd08400 4 RSLQLNVLEAHKLPVKH--VPHPYCVISLNEV-KVA--RTKVREGPNPVWSEEFVFDDLPPDVNSFTISLSNKAK----- 73 (126)
T ss_pred eEEEEEEEEeeCCCCCC--CCCeeEEEEECCE-eEE--EeecCCCCCCccCCEEEEecCCCCcCEEEEEEEECCC-----
Confidence 34788899999998754 3677998885321 111 11111135789999999987643 467777654332
Q ss_pred CCCcccceeEEeecccccCCCCCceEEEEEeeccCCCCCCCCCceEEEEEeecC
Q 010105 411 TGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTI 464 (518)
Q Consensus 411 ~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~~~~~p~~lrva~S~Tp 464 (518)
+.+...||.++|+..++.. .-.+|.|++|.+.++....+.=.||+.+++++
T Consensus 74 ~~~d~~iG~v~i~l~~l~~---~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 74 RSKDSEIAEVTVQLSKLQN---GQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCCCCeEEEEEEEHhHccC---CCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 5678899999999999885 34579999999876534444568999988765
No 8
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=97.61 E-value=0.00084 Score=60.56 Aligned_cols=114 Identities=8% Similarity=0.185 Sum_probs=77.9
Q ss_pred EEEEEEeecCCCCCcCCCCceEEEEeccCCCcccccccceee--eeccccceeEEEEee-ccccEEEEEEecCCCCccCC
Q 010105 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMT 411 (518)
Q Consensus 335 v~l~iv~~~nl~~~~~~~~~lfVr~~~~q~d~~~~~~~~~~i--~s~s~~~~~~~l~CE-~t~~lv~elr~~~~~~l~~~ 411 (518)
+.|.++++|+++...-.+.+-||+++..+ ..+ +.++.. ..++-|++.+.|.|. +...|.||+..+.. +
T Consensus 4 L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~--~~~--kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~-----~ 74 (121)
T cd04016 4 LSITVVQAKLVKNYGLTRMDPYCRIRVGH--AVY--ETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERA-----F 74 (121)
T ss_pred EEEEEEEccCCCcCCCCCCCceEEEEECC--EEE--EeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCC-----C
Confidence 56678899987643212367899988632 222 112212 357899999999998 45689999988765 5
Q ss_pred CCcccceeEEeecccccCCCCCceEEEEEeeccCCCCCCCCCceEEEEEe
Q 010105 412 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVS 461 (518)
Q Consensus 412 ~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~~~~~p~~lrva~S 461 (518)
.+..+||.++|+..+.+.+ .=.++.|++|.++++. .+.-++++.+|
T Consensus 75 ~~dd~iG~~~i~l~~~~~~--g~~~~~W~~L~~~~~~--~~~g~i~l~l~ 120 (121)
T cd04016 75 TMDERIAWTHITIPESVFN--GETLDDWYSLSGKQGE--DKEGMINLVFS 120 (121)
T ss_pred cCCceEEEEEEECchhccC--CCCccccEeCcCccCC--CCceEEEEEEe
Confidence 5678899999999754433 2337999999886653 34456776665
No 9
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=97.60 E-value=0.0007 Score=60.32 Aligned_cols=104 Identities=18% Similarity=0.316 Sum_probs=72.7
Q ss_pred EEEEEEeecCCCCCcC-CCCceEEEEeccCCCcccccccceeeeeccccceeEEEEeec-------cccEEEEEEecCCC
Q 010105 335 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA-------TGELLFELVSHSTS 406 (518)
Q Consensus 335 v~l~iv~~~nl~~~~~-~~~~lfVr~~~~q~d~~~~~~~~~~i~s~s~~~~~~~l~CE~-------t~~lv~elr~~~~~ 406 (518)
|.|.|++++||+.... ...+-||.++.. ..+ .+ .+...=+.++-|++.+.|.+-. ...|.|++..+..
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~-~~~-~k-T~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~- 76 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG-KEK-YS-TSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL- 76 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEEC-Cee-ee-eeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc-
Confidence 4678899999985422 235789999853 212 11 1111224678999998888743 4578888877653
Q ss_pred CccCCCCcccceeEEeecccccCCCCCceEEEEEeeccCCC
Q 010105 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSG 447 (518)
Q Consensus 407 ~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~ 447 (518)
+++...||.+.|+..++... +.-....|++|.++++
T Consensus 77 ----~~~d~~iG~~~i~l~~l~~~-~~~~~~~W~~L~~~~~ 112 (126)
T cd08682 77 ----LGLDKFLGQVSIPLNDLDED-KGRRRTRWFKLESKPG 112 (126)
T ss_pred ----cCCCceeEEEEEEHHHhhcc-CCCcccEEEECcCCCC
Confidence 45678999999999999854 4567899999987655
No 10
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=97.57 E-value=0.0012 Score=61.95 Aligned_cols=98 Identities=14% Similarity=0.309 Sum_probs=69.1
Q ss_pred CceEEEEeccCCCcccccccceee--eeccccceeEEEEee-ccccEEEEEEecCCCCccCCCCcccceeEEeecccccC
Q 010105 353 GDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFIS 429 (518)
Q Consensus 353 ~~lfVr~~~~q~d~~~~~~~~~~i--~s~s~~~~~~~l~CE-~t~~lv~elr~~~~~~l~~~~~sk~lG~~s~~w~dll~ 429 (518)
.+-||.++.. +.+.. ++..+ +.++.|++.+.|+|. ....+.|++..+.. + +..+||+++|++.++..
T Consensus 58 sDPYv~V~l~-~~~~~---rT~v~~~~~nP~WnE~F~~~~~~~~~~l~~~V~d~d~-----~-~~~~IG~~~i~l~~l~~ 127 (158)
T cd04015 58 SDPYATVDLA-GARVA---RTRVIENSENPVWNESFHIYCAHYASHVEFTVKDNDV-----V-GAQLIGRAYIPVEDLLS 127 (158)
T ss_pred cCeEEEEEEC-CeEee---EEEEeCCCCCCccceEEEEEccCCCCEEEEEEEeCCC-----c-CCcEEEEEEEEhHHccC
Confidence 3678877743 22211 12222 356799999999997 45678888876543 2 34799999999999985
Q ss_pred CCCCceEEEEEeeccCCCCCCCCCceEEEEEeec
Q 010105 430 PISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFT 463 (518)
Q Consensus 430 ~~~~Ls~E~w~~l~~~~~~~~~~p~~lrva~S~T 463 (518)
.-..+.|++|....+..-.....|||.++||
T Consensus 128 ---g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 128 ---GEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred ---CCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 3468999999877555445567999998875
No 11
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=97.39 E-value=0.0015 Score=56.47 Aligned_cols=99 Identities=20% Similarity=0.280 Sum_probs=71.4
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCcccccccceeeeeccccceeEEEEeec--cccEEEEEEecCCCCccCC
Q 010105 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA--TGELLFELVSHSTSKIPMT 411 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~~~i~s~s~~~~~~~l~CE~--t~~lv~elr~~~~~~l~~~ 411 (518)
+.|.|++++||+... ....+-||.++... ...+. +...=+.++.|++.+.|.|.. ...|.|++..+..
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~kT-~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~------ 72 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGK--TTQKS-KVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT------ 72 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECC--EEEeC-ccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC------
Confidence 567899999998542 12357789888542 22211 111124577999999999993 5678888887653
Q ss_pred CCcccceeEEeecccccCCCCCceEEEEEeeccC
Q 010105 412 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (518)
Q Consensus 412 ~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~ 445 (518)
.+.||++.|++.++... +...++.||+|..+
T Consensus 73 --~~~iG~~~i~l~~l~~~-~~~~~~~w~~L~~~ 103 (105)
T cd04050 73 --GKSLGSLTLPLSELLKE-PDLTLDQPFPLDNS 103 (105)
T ss_pred --CCccEEEEEEHHHhhcc-ccceeeeeEecCCC
Confidence 56799999999999975 57889999999654
No 12
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=97.37 E-value=0.0025 Score=59.34 Aligned_cols=121 Identities=12% Similarity=0.240 Sum_probs=80.9
Q ss_pred EEEEEEeecCCCCCcC-CCCceEEEEeccCCCcccccccceee--eeccccceeEEEEee-c-cccEEEEEEecCCCCcc
Q 010105 335 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-A-TGELLFELVSHSTSKIP 409 (518)
Q Consensus 335 v~l~iv~~~nl~~~~~-~~~~lfVr~~~~q~d~~~~~~~~~~i--~s~s~~~~~~~l~CE-~-t~~lv~elr~~~~~~l~ 409 (518)
+.|.|++++||+.... ...+-||.++... ... +.+... +.++.|++.+.|.+. + ...+.|++.-+..
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~--~~~--kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~---- 73 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGN--QVL--RTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVG---- 73 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECC--EEe--eeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecC----
Confidence 4678899999975432 2357799988542 211 112222 247799999999984 3 4588899976544
Q ss_pred CCCCcccceeEEeecccccCC-CCCceEEEEEeeccCCCC----CCCC-CceEEEEEeecC
Q 010105 410 MTGASKTMGTASLSLQNFISP-ISKLAVEQWFDLVPRSGN----VSSK-PISLRIAVSFTI 464 (518)
Q Consensus 410 ~~~~sk~lG~~s~~w~dll~~-~~~Ls~E~w~~l~~~~~~----~~~~-p~~lrva~S~Tp 464 (518)
.++..+||++.|+++++... .+.-.+++|++|...++. ...+ .-.|+|-++|++
T Consensus 74 -~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 74 -PNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred -CCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 34568999999999998753 123457999999887652 1222 256777777663
No 13
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=97.24 E-value=0.0015 Score=59.55 Aligned_cols=101 Identities=17% Similarity=0.276 Sum_probs=72.1
Q ss_pred EEEEEEeecCCCCCcCCCCceEEEEeccCCCccccccccee---eeeccccceeEEEEeec----cccEEEEEEecCCCC
Q 010105 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLT---ILSKSGMKQVASFQCEA----TGELLFELVSHSTSK 407 (518)
Q Consensus 335 v~l~iv~~~nl~~~~~~~~~lfVr~~~~q~d~~~~~~~~~~---i~s~s~~~~~~~l~CE~----t~~lv~elr~~~~~~ 407 (518)
+.|.|++++||+.......+.||+.+..-.++... +++.. =+.++.|++.+.|.... +..|.|+|..+..
T Consensus 17 L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~-~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~-- 93 (137)
T cd08409 17 LTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVK-TKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG-- 93 (137)
T ss_pred EEEEEEEecCCCcccCCCCCeEEEEEEEECCEEee-eeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC--
Confidence 67778999999744334478999999663333322 11222 25677999999998852 3679999988776
Q ss_pred ccCCCCcccceeEEee------------cccccCCCCCceEEEEEee
Q 010105 408 IPMTGASKTMGTASLS------------LQNFISPISKLAVEQWFDL 442 (518)
Q Consensus 408 l~~~~~sk~lG~~s~~------------w~dll~~~~~Ls~E~w~~l 442 (518)
.+++.+||.++|+ |+++++. |.-.+++|=.|
T Consensus 94 ---~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~-p~~~i~~WH~l 136 (137)
T cd08409 94 ---VRKSKLLGRVVLGPFMYARGKELEHWNDMLSK-PKELIKRWHAL 136 (137)
T ss_pred ---CCCcceEEEEEECCcccCCChHHHHHHHHHhC-CCCceeEEEeC
Confidence 5678899999997 8888875 67888888543
No 14
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=97.17 E-value=0.0072 Score=53.45 Aligned_cols=104 Identities=21% Similarity=0.172 Sum_probs=69.2
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCcccccccce-eeeeccccceeEEEEeec--cccEEEEEEecCCCCccC
Q 010105 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKL-TILSKSGMKQVASFQCEA--TGELLFELVSHSTSKIPM 410 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~~-~i~s~s~~~~~~~l~CE~--t~~lv~elr~~~~~~l~~ 410 (518)
+.|.|++++||+... ....+-||.++........ .+.++ .=+.++.|++.+.|.... ...|.|++..+..
T Consensus 3 ~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~-~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~----- 76 (126)
T cd04043 3 FTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRI-AKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSF----- 76 (126)
T ss_pred EEEEEEEeECCCCCCCCCCCCceEEEEECCCCeee-ecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCC-----
Confidence 356689999997542 2235679998744221111 11111 114567899999999874 5678888876643
Q ss_pred CCCcccceeEEeecccccCCCCCceEEEEEeecc
Q 010105 411 TGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 444 (518)
Q Consensus 411 ~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~ 444 (518)
+.+..+||.+.+++.++......-..++|++|.+
T Consensus 77 ~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~ 110 (126)
T cd04043 77 VGKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT 110 (126)
T ss_pred CCCCceEEEEEEecCHHHcCCCCCCceEEEEcCC
Confidence 3467889999999988765321456789999986
No 15
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=97.11 E-value=0.0084 Score=53.38 Aligned_cols=114 Identities=21% Similarity=0.260 Sum_probs=79.0
Q ss_pred EEeecCCCCCcCCCCceEEEEeccCCCcccccccceeeeeccccceeEEEEee----ccccEEEEEEecCCCCccCCCCc
Q 010105 339 IVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE----ATGELLFELVSHSTSKIPMTGAS 414 (518)
Q Consensus 339 iv~~~nl~~~~~~~~~lfVr~~~~q~d~~~~~~~~~~i~s~s~~~~~~~l~CE----~t~~lv~elr~~~~~~l~~~~~s 414 (518)
+++++||+. .....+-||+++... .+ .+ .+...=+.++.|++.+.|.+. ....+.|++..+.. +.+.
T Consensus 2 vi~a~~L~~-~~g~~Dpyv~v~~~~-~~-~k-T~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~-----~~~d 72 (127)
T cd08373 2 VVSLKNLPG-LKGKGDRIAKVTFRG-VK-KK-TRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK-----VGRN 72 (127)
T ss_pred eEEeeCCcc-cCCCCCCEEEEEECC-Ee-ee-cceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC-----CCCC
Confidence 688999987 333467799888531 11 11 011112356799999999995 35678888877654 3566
Q ss_pred ccceeEEeecccccCCCCCceEEEEEeeccCCCCCCCCCceEEEEEeecCCc
Q 010105 415 KTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTIPT 466 (518)
Q Consensus 415 k~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~~~~~p~~lrva~S~Tppv 466 (518)
.+||.+.++.+++... -....|+.|...++. ...-.|++.+++.||-
T Consensus 73 ~~iG~~~~~l~~l~~~---~~~~~~~~L~~~~~~--~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 73 RLIGSATVSLQDLVSE---GLLEVTEPLLDSNGR--PTGATISLEVSYQPPD 119 (127)
T ss_pred ceEEEEEEEhhHcccC---CceEEEEeCcCCCCC--cccEEEEEEEEEeCCC
Confidence 7999999999999963 458889999765542 2235889999988875
No 16
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=97.08 E-value=0.0087 Score=54.40 Aligned_cols=118 Identities=11% Similarity=0.101 Sum_probs=78.3
Q ss_pred EEEEEEeecC---CCCCc-CCCCceEEEEeccCCCcccccccceeeeeccccceeEEEEee-ccccEEEEEEecCCCC-c
Q 010105 335 VFVEIVAVKN---LPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSK-I 408 (518)
Q Consensus 335 v~l~iv~~~n---l~~~~-~~~~~lfVr~~~~q~d~~~~~~~~~~i~s~s~~~~~~~l~CE-~t~~lv~elr~~~~~~-l 408 (518)
+.|.+++|+| ++... ....+-||.++- ++.... .+.+.=+.++.|++.+.|+|. +...|.|++..+.... =
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~--g~~~~r-Tk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKY--GPKWVR-TRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWK 78 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEE--CCEEeE-cCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccc
Confidence 4566799999 55321 123577999884 222221 111222567899999999997 5667899987765421 0
Q ss_pred cCCCCcccceeEEeecccccCCCCCceEEEEEeeccCCCCCCCCCceEEE
Q 010105 409 PMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRI 458 (518)
Q Consensus 409 ~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~~~~~p~~lrv 458 (518)
...++..+||++.|+.+++.. .-.++.|++|...++....+.-+||.
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~---~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLED---DRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccC---CCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 123578999999999999875 34689999998766544445556654
No 17
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=97.08 E-value=0.0029 Score=56.49 Aligned_cols=101 Identities=16% Similarity=0.274 Sum_probs=67.4
Q ss_pred EEEEEEeecCCCCCcCCCCceEEEEeccCCCc-ccccccc-eeeeeccccceeEEEEeec-c--ccEEEEEEecCCCCcc
Q 010105 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDI-FFNAKQK-LTILSKSGMKQVASFQCEA-T--GELLFELVSHSTSKIP 409 (518)
Q Consensus 335 v~l~iv~~~nl~~~~~~~~~lfVr~~~~q~d~-~~~~~~~-~~i~s~s~~~~~~~l~CE~-t--~~lv~elr~~~~~~l~ 409 (518)
+.|.|++++|++.......+-||+++...... ...-+.+ ..=+.++.|++.+.|.+.. . ..++|++..+...
T Consensus 14 L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~--- 90 (119)
T cd08685 14 LTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK--- 90 (119)
T ss_pred EEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC---
Confidence 77889999999754333458899999653221 1111111 1224577999999999863 2 3477777665442
Q ss_pred CCCCcccceeEEeecccccCCCCCceEEEEEee
Q 010105 410 MTGASKTMGTASLSLQNFISPISKLAVEQWFDL 442 (518)
Q Consensus 410 ~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l 442 (518)
.+.+..||.++|+..++... =.++.|+.|
T Consensus 91 -~~~~~~lG~~~i~l~~~~~~---~~~~~Wy~l 119 (119)
T cd08685 91 -SRDSGLLGCMSFGVKSIVNQ---KEISGWYYL 119 (119)
T ss_pred -cCCCEEEEEEEecHHHhccC---ccccceEeC
Confidence 35678999999999999843 236899864
No 18
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=97.06 E-value=0.0037 Score=54.55 Aligned_cols=99 Identities=20% Similarity=0.301 Sum_probs=71.8
Q ss_pred EEEEEeecCCCCCc--CCCCceEEEEeccCCCcccccccceee--eecccc-ceeEEEEeec----cccEEEEEEecCCC
Q 010105 336 FVEIVAVKNLPEDH--KDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGM-KQVASFQCEA----TGELLFELVSHSTS 406 (518)
Q Consensus 336 ~l~iv~~~nl~~~~--~~~~~lfVr~~~~q~d~~~~~~~~~~i--~s~s~~-~~~~~l~CE~----t~~lv~elr~~~~~ 406 (518)
.|.|++++||+... ....+-||.++... ... + +-.+ +.++.| ++.+.|.+.. +..|.|++..+..
T Consensus 2 ~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~--~~~--k-T~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~- 75 (110)
T cd08688 2 KVRVVAARDLPVMDRSSDLTDAFVEVKFGS--TTY--K-TDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT- 75 (110)
T ss_pred EEEEEEEECCCccccCCCCCCceEEEEECC--eeE--e-cceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC-
Confidence 56789999998532 12357899998643 111 1 1222 456799 8988888863 3678899988754
Q ss_pred CccCCCCcccceeEEeecccccCCCCCceEEEEEeecc
Q 010105 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 444 (518)
Q Consensus 407 ~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~ 444 (518)
+++..+||.+.++.+++..+.+.-.+++||+|..
T Consensus 76 ----~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 76 ----YSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ----CCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 4567899999999999998656778999999853
No 19
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=97.03 E-value=0.0056 Score=54.13 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=68.8
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCcccccccceee---eeccccceeEEEEeec----cccEEEEEEecCCC
Q 010105 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA----TGELLFELVSHSTS 406 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~~~i---~s~s~~~~~~~l~CE~----t~~lv~elr~~~~~ 406 (518)
+.|.|++++||+... ....+-||.++....+.. ..+..+ +.++.|++.+.|.+.. +..|.|++..+..
T Consensus 18 L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~---~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~- 93 (124)
T cd08385 18 LTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKK---KFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR- 93 (124)
T ss_pred EEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCC---ceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC-
Confidence 788899999998542 233578999886522221 112222 4567999999999863 4578888886543
Q ss_pred CccCCCCcccceeEEeecccccCCCCCceEEEEEeec
Q 010105 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLV 443 (518)
Q Consensus 407 ~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~ 443 (518)
+++...||.+.|++.++-. .-..+.|++|.
T Consensus 94 ----~~~~~~lG~~~i~l~~~~~---~~~~~~W~~l~ 123 (124)
T cd08385 94 ----FSKHDLIGEVRVPLLTVDL---GHVTEEWRDLE 123 (124)
T ss_pred ----CCCCceeEEEEEecCcccC---CCCcceEEEcc
Confidence 4677899999999999864 33578999874
No 20
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=97.01 E-value=0.008 Score=52.56 Aligned_cols=99 Identities=15% Similarity=0.276 Sum_probs=68.8
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCcccccccceee--eeccccceeEEEEeec--cccEEEEEEecCCCCcc
Q 010105 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCEA--TGELLFELVSHSTSKIP 409 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~~~i--~s~s~~~~~~~l~CE~--t~~lv~elr~~~~~~l~ 409 (518)
+.|.|++++||+... ....+-||.++... .+ . +.+... +.++-|++.+.|.+-. ...+.||+..+..
T Consensus 3 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~-~--kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~---- 74 (118)
T cd08681 3 LVVVVLKARNLPNKRKLDKQDPYCVLRIGG-VT-K--KTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDK---- 74 (118)
T ss_pred EEEEEEEccCCCCCCcCCCCCceEEEEECC-Cc-c--ccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCC----
Confidence 678899999998542 12357799988542 11 1 111111 2478999999999874 4578899887543
Q ss_pred CCCCcccceeEEeecccccCCCCCceEEEEEeeccCC
Q 010105 410 MTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRS 446 (518)
Q Consensus 410 ~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~ 446 (518)
.+ ..+||.+.|++.+++... ..+.|++|..++
T Consensus 75 -~~-~~~iG~~~~~l~~~~~~~---~~~~w~~L~~~~ 106 (118)
T cd08681 75 -RK-PDLIGDTEVDLSPALKEG---EFDDWYELTLKG 106 (118)
T ss_pred -CC-CcceEEEEEecHHHhhcC---CCCCcEEeccCC
Confidence 23 789999999999998642 468999997643
No 21
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=96.99 E-value=0.012 Score=52.31 Aligned_cols=105 Identities=9% Similarity=0.054 Sum_probs=74.4
Q ss_pred EEEEEEEeecCCCCCc-CCCCceEEEEeccCCCcccccccceee--eeccccceeEEEEeeccccEEEEEEecCCCCccC
Q 010105 334 EVFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCEATGELLFELVSHSTSKIPM 410 (518)
Q Consensus 334 ev~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~~~i--~s~s~~~~~~~l~CE~t~~lv~elr~~~~~~l~~ 410 (518)
|+.|.|++++|++... ....+-||+++.. +.... ++..+ +.++.|++.+.|.+.....|.||+..+...
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~-~~~~~---kT~v~~~t~nP~Wne~f~~~~~~~~~l~i~V~d~~~~---- 72 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVD-GGQTH---STDVAKKTLDPKWNEHFDLTVGPSSIITIQVFDQKKF---- 72 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEEC-Cccce---EccEEcCCCCCcccceEEEEeCCCCEEEEEEEECCCC----
Confidence 5789999999997442 1235679998853 22221 12223 457799999999998888999999876552
Q ss_pred CC-CcccceeEEeecccccCCCCCceEEEEEeeccCCCC
Q 010105 411 TG-ASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGN 448 (518)
Q Consensus 411 ~~-~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~ 448 (518)
.+ ....||.+.|+.++|+.. .=+.+.|++|.+.+..
T Consensus 73 ~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~~l~~~~~~ 109 (123)
T cd08382 73 KKKDQGFLGCVRIRANAVLPL--KDTGYQRLDLRKLKKS 109 (123)
T ss_pred CCCCCceEeEEEEEHHHcccc--CCCccceeEeecCCCC
Confidence 22 257999999999999964 2245669999766544
No 22
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=96.99 E-value=0.0066 Score=53.45 Aligned_cols=99 Identities=11% Similarity=0.191 Sum_probs=66.6
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCcccccccc--eeeeeccccceeEEEEeec-----cccEEEEEEecCCC
Q 010105 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQK--LTILSKSGMKQVASFQCEA-----TGELLFELVSHSTS 406 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~--~~i~s~s~~~~~~~l~CE~-----t~~lv~elr~~~~~ 406 (518)
+.|.|++++|++... ....+-||+++....+......++ ..=+.++.|++.+.|.+-. +..|.|++..+..
T Consensus 18 L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~- 96 (125)
T cd04031 18 LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDR- 96 (125)
T ss_pred EEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCC-
Confidence 788899999997542 234678999987542221111111 1225677999999998642 4578888877654
Q ss_pred CccCCCCcccceeEEeecccccCCCCCceEEEEEee
Q 010105 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 442 (518)
Q Consensus 407 ~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l 442 (518)
+++..+||.++|+.++.... . .+.|++|
T Consensus 97 ----~~~~~~iG~~~i~l~~~~~~--~--~~~W~~L 124 (125)
T cd04031 97 ----DGENDFLGEVVIDLADALLD--D--EPHWYPL 124 (125)
T ss_pred ----CCCCcEeeEEEEeccccccc--C--CcceEEC
Confidence 46788999999999994332 2 3689986
No 23
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.98 E-value=0.013 Score=52.21 Aligned_cols=122 Identities=20% Similarity=0.229 Sum_probs=80.3
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCC--Ccccccccceee--eeccccceeEEEEeec-cccEEEEEEecCCCCc
Q 010105 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQP--DIFFNAKQKLTI--LSKSGMKQVASFQCEA-TGELLFELVSHSTSKI 408 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~--d~~~~~~~~~~i--~s~s~~~~~~~l~CE~-t~~lv~elr~~~~~~l 408 (518)
+.|.|++++|++... ....+-||.++.... .....-.++-.+ +.++.|++.+.|+..+ ...+.|++..+..
T Consensus 2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~--- 78 (133)
T cd04033 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENR--- 78 (133)
T ss_pred EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCC---
Confidence 456789999997542 233577998885422 111111111112 4567999999999874 5678888886653
Q ss_pred cCCCCcccceeEEeecccccCCCCC---ceEEEEEeeccCCCCCCCCCceEEEEEee
Q 010105 409 PMTGASKTMGTASLSLQNFISPISK---LAVEQWFDLVPRSGNVSSKPISLRIAVSF 462 (518)
Q Consensus 409 ~~~~~sk~lG~~s~~w~dll~~~~~---Ls~E~w~~l~~~~~~~~~~p~~lrva~S~ 462 (518)
+.+...||.+.|+..++....+. -..++|+.|.+.++ .+...=.|++.+++
T Consensus 79 --~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~G~l~~~~~~ 132 (133)
T cd04033 79 --LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSS-KSRVKGHLRLYMAY 132 (133)
T ss_pred --CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCC-CCcceeEEEEEEee
Confidence 45678999999999999976432 25889999986533 23334477777764
No 24
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=96.97 E-value=0.0076 Score=53.81 Aligned_cols=99 Identities=18% Similarity=0.300 Sum_probs=70.7
Q ss_pred EEEEEEeecCCCCCcCCCCceEEEEeccCCCcccccccceee--eeccccceeEEEEeec--cccEEEEEEecCCCCccC
Q 010105 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCEA--TGELLFELVSHSTSKIPM 410 (518)
Q Consensus 335 v~l~iv~~~nl~~~~~~~~~lfVr~~~~q~d~~~~~~~~~~i--~s~s~~~~~~~l~CE~--t~~lv~elr~~~~~~l~~ 410 (518)
+.|.|++++|++.. + .+-||.++... ... + +-.+ +.++.|++.+.|.+.. ...|.|++..+..
T Consensus 2 L~V~Vi~a~~L~~~-~--~Dpyv~v~l~~--~~~--k-T~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~----- 68 (121)
T cd08378 2 LYVRVVKARGLPAN-S--NDPVVEVKLGN--YKG--S-TKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDK----- 68 (121)
T ss_pred EEEEEEEecCCCcc-c--CCCEEEEEECC--ccc--c-ccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCC-----
Confidence 46778999999876 3 67799998642 111 1 1122 4567999999999973 4568888876543
Q ss_pred CCCcccceeEEeecccccCCC--CCceEEEEEeeccCCC
Q 010105 411 TGASKTMGTASLSLQNFISPI--SKLAVEQWFDLVPRSG 447 (518)
Q Consensus 411 ~~~sk~lG~~s~~w~dll~~~--~~Ls~E~w~~l~~~~~ 447 (518)
+ +..+||.+.|+++++.... ..-...+|++|.+.++
T Consensus 69 ~-~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~ 106 (121)
T cd08378 69 A-KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG 106 (121)
T ss_pred C-cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC
Confidence 2 6788999999999987532 2334779999988765
No 25
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=96.97 E-value=0.0075 Score=54.15 Aligned_cols=100 Identities=15% Similarity=0.165 Sum_probs=69.6
Q ss_pred EEEEEEeecCCCCCc--CCCCceEEEEeccCCCcccccccceee---eeccccceeEEEEeec----cccEEEEEEecCC
Q 010105 335 VFVEIVAVKNLPEDH--KDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA----TGELLFELVSHST 405 (518)
Q Consensus 335 v~l~iv~~~nl~~~~--~~~~~lfVr~~~~q~d~~~~~~~~~~i---~s~s~~~~~~~l~CE~----t~~lv~elr~~~~ 405 (518)
+.|.|++++||+... ....+-||.++....+.... +++..+ +.++.|++.+.|.... ...|.|++..+..
T Consensus 17 L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~-~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~ 95 (125)
T cd04029 17 LNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQS-KRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDR 95 (125)
T ss_pred EEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCcccc-ceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC
Confidence 667789999997532 23467899998753332211 112233 3567999999998763 3468888886543
Q ss_pred CCccCCCCcccceeEEeecccccCCCCCceEEEEEeec
Q 010105 406 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLV 443 (518)
Q Consensus 406 ~~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~ 443 (518)
+++...||.+.|+..++--. =.++.|++|.
T Consensus 96 -----~~~~~~lG~~~i~l~~~~~~---~~~~~w~~l~ 125 (125)
T cd04029 96 -----FGRNTFLGEVEIPLDSWNFD---SQHEECLPLH 125 (125)
T ss_pred -----CCCCcEEEEEEEeCCccccc---CCcccEEECc
Confidence 57888999999999998643 3489999874
No 26
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=96.94 E-value=0.011 Score=52.61 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=76.0
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCccccccccee-e--eeccccceeEEEEee-cc----ccEEEEEEecCC
Q 010105 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLT-I--LSKSGMKQVASFQCE-AT----GELLFELVSHST 405 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~~~-i--~s~s~~~~~~~l~CE-~t----~~lv~elr~~~~ 405 (518)
+.|.|++++|++... ....+-||.++... .+ .+.. + +.++.|++.+.|.+. +. ..|.|++.-+..
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-~~-----~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~ 75 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDG-QK-----KRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR 75 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECC-EE-----ecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC
Confidence 567899999997442 23357789887432 11 1122 2 456789999999997 32 357777776433
Q ss_pred CCccCCCCcccceeEEeecccccCCCCCceEEEEEeeccCCCCCCCCCceEEEEEeec
Q 010105 406 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFT 463 (518)
Q Consensus 406 ~~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~~~~~p~~lrva~S~T 463 (518)
+ .++...||.+.|+.+++... .-....|++|..++ ..+..-=+|++.+.+|
T Consensus 76 -~---~~~d~~lG~v~i~l~~l~~~--~~~~~~w~~L~~~~-~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 76 -S---GRRRSFLGRVRISGTSFVPP--SEAVVQRYPLEKRG-LFSRVRGEIGLKVYIT 126 (127)
T ss_pred -C---cCCCCeeeEEEEcHHHcCCC--CCccceEeEeeeCC-CCCCccEEEEEEEEEc
Confidence 1 23678999999999999832 34578999998642 2221122677777766
No 27
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=96.93 E-value=0.015 Score=50.62 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=70.3
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCcccccccceeeeeccccceeEEEEee-c-cccEEEEEEecCCCCccCC
Q 010105 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-A-TGELLFELVSHSTSKIPMT 411 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~~~i~s~s~~~~~~~l~CE-~-t~~lv~elr~~~~~~l~~~ 411 (518)
|.|.|++++||+... ....+-||.++... ...+. +...=+.++.|++.+.|... + ...|.+++..+.. +
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~--~~~kT-~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~-----~ 73 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGN--EKYKS-KVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDT-----G 73 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEECC--EeEec-ccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCC-----C
Confidence 456789999998542 22356789888532 11110 11112567799999988876 3 5677788765543 4
Q ss_pred CCcccceeEEeecccccCCCCCceEEEEEeeccCCCC
Q 010105 412 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGN 448 (518)
Q Consensus 412 ~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~ 448 (518)
++...||.+.+++.++... -..+.|++|.+..|.
T Consensus 74 ~~~~~iG~~~~~l~~l~~~---~~~~~w~~L~~~~G~ 107 (116)
T cd08376 74 KKDEFIGRCEIDLSALPRE---QTHSLELELEDGEGS 107 (116)
T ss_pred CCCCeEEEEEEeHHHCCCC---CceEEEEEccCCCcE
Confidence 5678999999999998853 368999999886443
No 28
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=96.85 E-value=0.016 Score=54.04 Aligned_cols=105 Identities=19% Similarity=0.177 Sum_probs=72.1
Q ss_pred EEEEEEeecCCCCC--cCCCCceEEEEeccCCC-cccccccceee---eeccccceeEEEEee-ccccEEEEEEecCCCC
Q 010105 335 VFVEIVAVKNLPED--HKDKGDLFVFFSKSQPD-IFFNAKQKLTI---LSKSGMKQVASFQCE-ATGELLFELVSHSTSK 407 (518)
Q Consensus 335 v~l~iv~~~nl~~~--~~~~~~lfVr~~~~q~d-~~~~~~~~~~i---~s~s~~~~~~~l~CE-~t~~lv~elr~~~~~~ 407 (518)
+.|.|++++||+.. .....+=||+++.. || +... +++..+ +.++.|++.+.|... ....|.|++..+.+.
T Consensus 31 L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Ll-p~~~~~~-k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~- 107 (146)
T cd04028 31 LEVEVIRARGLVQKPGSKVLPAPYVKVYLL-EGKKCIA-KKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR- 107 (146)
T ss_pred EEEEEEEeeCCCcccCCCCCcCCeEEEEEE-CCCcccc-ceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC-
Confidence 67778999999753 22235779999976 44 2221 222222 456789999999887 556777888643332
Q ss_pred ccCCCCcccceeEEeecccccCCCCCceEEEEEeeccCCCC
Q 010105 408 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGN 448 (518)
Q Consensus 408 l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~ 448 (518)
+++...||.+.|+++++--.. ....|+.|.|+...
T Consensus 108 ---~~~~~~iG~~~i~L~~l~~~~---~~~~Wy~L~~~~~~ 142 (146)
T cd04028 108 ---MDKKVFMGVAQILLDDLDLSN---LVIGWYKLFPTSSL 142 (146)
T ss_pred ---CCCCceEEEEEEEcccccCCC---CceeEEecCCcccc
Confidence 567789999999999973222 46889999987543
No 29
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=96.81 E-value=0.013 Score=50.95 Aligned_cols=98 Identities=10% Similarity=0.083 Sum_probs=68.5
Q ss_pred EEEEEEEeecCCCCCcCCCCceEEEEeccCCCcccccccceee--eeccccceeEEEEee-c-----cccEEEEEEecCC
Q 010105 334 EVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-A-----TGELLFELVSHST 405 (518)
Q Consensus 334 ev~l~iv~~~nl~~~~~~~~~lfVr~~~~q~d~~~~~~~~~~i--~s~s~~~~~~~l~CE-~-----t~~lv~elr~~~~ 405 (518)
+|.|.+++++||+.+. .+-||.++.. +... + +-.+ +.++-|++.+.|... + ...|.|++..+..
T Consensus 5 ~l~V~v~~a~~L~~~~---~dpyv~v~~~--~~~~--k-T~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 5 QVRVRVIEARQLVGGN---IDPVVKVEVG--GQKK--Y-TSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred EEEEEEEEcccCCCCC---CCCEEEEEEC--CEee--e-eeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 5888999999999332 5779998865 2111 1 1122 346789999998864 3 2457777776543
Q ss_pred CCccCCCCcccceeEEeecccccCCCCCceEEEEEeecc
Q 010105 406 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 444 (518)
Q Consensus 406 ~~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~ 444 (518)
+++..+||.++|+++++......=-+++|++|..
T Consensus 77 -----~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 77 -----LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred -----cccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 4557999999999999987643345799999853
No 30
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=96.78 E-value=0.0089 Score=54.77 Aligned_cols=98 Identities=15% Similarity=0.071 Sum_probs=70.0
Q ss_pred EEEEEEeecCCCCCcCCCCceEEEEeccCCCcccccccceeeeeccccceeEEEEee-ccccEEEEEEecCCCCccCCCC
Q 010105 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTGA 413 (518)
Q Consensus 335 v~l~iv~~~nl~~~~~~~~~lfVr~~~~q~d~~~~~~~~~~i~s~s~~~~~~~l~CE-~t~~lv~elr~~~~~~l~~~~~ 413 (518)
++|.+++|||++.... .+-||.+.-- ..+. +.+..=-+++-|++.+.|+.+ +..++++|++.+.. + .
T Consensus 4 L~V~Vv~Ar~L~~~~~--~dPYV~Ik~g-~~k~---kT~v~~~~nP~WnE~F~F~~~~~~~~L~v~V~dkd~-----~-~ 71 (127)
T cd08394 4 LCVLVKKAKLDGAPDK--FNTYVTLKVQ-NVKS---TTIAVRGSQPCWEQDFMFEINRLDLGLVIELWNKGL-----I-W 71 (127)
T ss_pred EEEEEEEeeCCCCCCC--CCCeEEEEEC-CEEe---EeeECCCCCCceeeEEEEEEcCCCCEEEEEEEeCCC-----c-C
Confidence 6788999999976442 3569998852 2111 101111247799999999997 66779999999662 3 6
Q ss_pred cccceeEEeecccccCCCCCceEEEEEeeccC
Q 010105 414 SKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (518)
Q Consensus 414 sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~ 445 (518)
-.+||.++|+++++......|. ..|+.|.|.
T Consensus 72 DD~lG~v~i~L~~v~~~~~~~~-~~Wy~L~~~ 102 (127)
T cd08394 72 DTLVGTVWIPLSTIRQSNEEGP-GEWLTLDSE 102 (127)
T ss_pred CCceEEEEEEhHHcccCCCCCC-CccEecChH
Confidence 6789999999999998754443 469999764
No 31
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=96.77 E-value=0.0025 Score=56.60 Aligned_cols=102 Identities=20% Similarity=0.281 Sum_probs=70.5
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCcccccccc--eeeeeccccceeEEEEeec----cccEEEEEEecCCCC
Q 010105 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQK--LTILSKSGMKQVASFQCEA----TGELLFELVSHSTSK 407 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~--~~i~s~s~~~~~~~l~CE~----t~~lv~elr~~~~~~ 407 (518)
+.|.|++++||+... ....+.||+++....+......++ ..-+.++.|++.+.|.+.. ...|.|++..+..
T Consensus 16 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~-- 93 (134)
T cd00276 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS-- 93 (134)
T ss_pred EEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCC--
Confidence 677789999998542 244689999997644321111111 1224567999999999874 3568888876654
Q ss_pred ccCCCCcccceeEEeecccccCCCCCceEEEEEeeccCC
Q 010105 408 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRS 446 (518)
Q Consensus 408 l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~ 446 (518)
+++.++||.+.|+..+ . .-..+.|++|..+.
T Consensus 94 ---~~~~~~lG~~~i~l~~-~----~~~~~~W~~l~~~~ 124 (134)
T cd00276 94 ---VGRNEVIGQVVLGPDS-G----GEELEHWNEMLASP 124 (134)
T ss_pred ---CCCCceeEEEEECCCC-C----CcHHHHHHHHHhCC
Confidence 3577899999999998 2 33578899987763
No 32
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=96.74 E-value=0.012 Score=52.69 Aligned_cols=99 Identities=18% Similarity=0.256 Sum_probs=66.9
Q ss_pred EEEEEEeecCCCCCcCCCCceEEEEeccCCCcccccccceee---eeccccceeEEEEe-e----ccccEEEEEEecCCC
Q 010105 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQC-E----ATGELLFELVSHSTS 406 (518)
Q Consensus 335 v~l~iv~~~nl~~~~~~~~~lfVr~~~~q~d~~~~~~~~~~i---~s~s~~~~~~~l~C-E----~t~~lv~elr~~~~~ 406 (518)
+.|.|++++||+.......+-||.++......... +.+..+ +.++.|++.+.|+. . .+..|.|++..+..
T Consensus 15 L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~-~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~- 92 (122)
T cd08381 15 LFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTT-KRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDS- 92 (122)
T ss_pred EEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCC-ceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCC-
Confidence 67778999999754333467899999652111111 111222 45679999999986 2 24567777776543
Q ss_pred CccCCCCcccceeEEeecccccCCCCCceEEEEEee
Q 010105 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 442 (518)
Q Consensus 407 ~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l 442 (518)
+++...||.+.|++.++.... ..+.|+.|
T Consensus 93 ----~~~~~~lG~~~i~l~~l~~~~---~~~~W~~L 121 (122)
T cd08381 93 ----LVENEFLGGVCIPLKKLDLSQ---ETEKWYPL 121 (122)
T ss_pred ----CcCCcEEEEEEEeccccccCC---CccceEEC
Confidence 467889999999999998532 35889886
No 33
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=96.74 E-value=0.027 Score=49.51 Aligned_cols=100 Identities=15% Similarity=0.172 Sum_probs=68.4
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCcccccccceee--eeccccceeEEEEeecc--ccEEEEEEecCCCCcc
Q 010105 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCEAT--GELLFELVSHSTSKIP 409 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~~~i--~s~s~~~~~~~l~CE~t--~~lv~elr~~~~~~l~ 409 (518)
+.|.|++++|++... ....+-||+++........ .++-.+ +.++.|++.+.|..... .-+.|++..+..
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~--~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~---- 75 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEK--KRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDY---- 75 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCcc--CccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCC----
Confidence 456789999997542 2345789999854211110 111122 34679999999988743 346777776543
Q ss_pred CCCCcccceeEEeecccccCCCCCceEEEEEeeccC
Q 010105 410 MTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (518)
Q Consensus 410 ~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~ 445 (518)
+ +...||++.|++.++.. .-..+.|++|.++
T Consensus 76 -~-~~~~iG~~~~~l~~l~~---g~~~~~~~~L~~~ 106 (119)
T cd04036 76 -V-MDDHLGTVLFDVSKLKL---GEKVRVTFSLNPQ 106 (119)
T ss_pred -C-CCcccEEEEEEHHHCCC---CCcEEEEEECCCC
Confidence 3 66789999999999874 4689999999876
No 34
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=96.72 E-value=0.015 Score=51.50 Aligned_cols=98 Identities=13% Similarity=0.178 Sum_probs=68.1
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCcccccccceee---eeccccceeEEEEeec----cccEEEEEEecCCC
Q 010105 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA----TGELLFELVSHSTS 406 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~~~i---~s~s~~~~~~~l~CE~----t~~lv~elr~~~~~ 406 (518)
+.|.|++++||+... ....+-||+++....+... . +..+ +.++.|++.+.|.+.. ...|.|++..+..
T Consensus 18 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~--~-kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~- 93 (124)
T cd08387 18 LNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNT--K-QSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ- 93 (124)
T ss_pred EEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCc--E-eCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC-
Confidence 678889999997532 2235779999974222211 1 2222 4567899998888752 3478888876543
Q ss_pred CccCCCCcccceeEEeecccccCCCCCceEEEEEeec
Q 010105 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLV 443 (518)
Q Consensus 407 ~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~ 443 (518)
+++...||.+.|+.+++... . .+..|+.|.
T Consensus 94 ----~~~~~~iG~~~i~l~~~~~~-~--~~~~W~~l~ 123 (124)
T cd08387 94 ----FSRDECIGVVELPLAEVDLS-E--KLDLWRKIQ 123 (124)
T ss_pred ----CCCCceeEEEEEecccccCC-C--CcceEEECc
Confidence 46678999999999999864 2 668899874
No 35
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=96.68 E-value=0.024 Score=49.57 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=74.0
Q ss_pred EEEEEEeecCCCCCc-C-CCCceEEEEeccCCCcccccccceee--eeccccceeEEEEee-ccccEEEEEEecCCCCcc
Q 010105 335 VFVEIVAVKNLPEDH-K-DKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-ATGELLFELVSHSTSKIP 409 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~-~~~~lfVr~~~~q~d~~~~~~~~~~i--~s~s~~~~~~~l~CE-~t~~lv~elr~~~~~~l~ 409 (518)
+.|.|++++||+... . ...+-||.++.... ....++..+ +.++.|++.+.|.+. ....+.||+..+..
T Consensus 4 l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~---~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~---- 76 (124)
T cd04044 4 LAVTIKSARGLKGSDIIGGTVDPYVTFSISNR---RELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFND---- 76 (124)
T ss_pred EEEEEEcccCCCcccccCCCCCCeEEEEECCC---CcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCC----
Confidence 567799999998422 1 12478999886542 011111122 456799999988887 36788999887654
Q ss_pred CCCCcccceeEEeecccccCCCCCceEEEEEeeccCCCCCCCCCceEEEEEeecC
Q 010105 410 MTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTI 464 (518)
Q Consensus 410 ~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~~~~~p~~lrva~S~Tp 464 (518)
+++..+||.+++++.++.... ... +.|..+..+ +...=.|+|.+.+-|
T Consensus 77 -~~~d~~iG~~~~~l~~l~~~~-~~~-~~~~~~~~~----~k~~G~i~~~l~~~p 124 (124)
T cd04044 77 -KRKDKLIGTAEFDLSSLLQNP-EQE-NLTKNLLRN----GKPVGELNYDLRFFP 124 (124)
T ss_pred -CCCCceeEEEEEEHHHhccCc-ccc-CcchhhhcC----CccceEEEEEEEeCC
Confidence 456789999999999999753 321 122333221 112247788777654
No 36
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=96.67 E-value=0.015 Score=52.10 Aligned_cols=100 Identities=16% Similarity=0.264 Sum_probs=68.9
Q ss_pred EEEEEEEeecCCCCCc--CCCCceEEEEeccCCCcccccccceee---eeccccceeEEEEeec----cccEEEEEEecC
Q 010105 334 EVFVEIVAVKNLPEDH--KDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA----TGELLFELVSHS 404 (518)
Q Consensus 334 ev~l~iv~~~nl~~~~--~~~~~lfVr~~~~q~d~~~~~~~~~~i---~s~s~~~~~~~l~CE~----t~~lv~elr~~~ 404 (518)
++.|.|++++|++... +...+-||+++......... +.+..+ +.++.|++.+.|.... +..|.|+|..+.
T Consensus 16 ~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~-~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~ 94 (125)
T cd08393 16 ELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRG-KRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRD 94 (125)
T ss_pred EEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccc-cccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCC
Confidence 3788899999998542 13468899999763221111 112222 4567999999998863 357888888765
Q ss_pred CCCccCCCCcccceeEEeecccccCCCCCceEEEEEee
Q 010105 405 TSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 442 (518)
Q Consensus 405 ~~~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l 442 (518)
. +++...||.+.|++.++-... ..+.|++|
T Consensus 95 ~-----~~~~~~iG~~~i~L~~~~~~~---~~~~W~~L 124 (125)
T cd08393 95 S-----LGRNSFLGEVEVDLGSWDWSN---TQPTWYPL 124 (125)
T ss_pred C-----CCCCcEeEEEEEecCccccCC---CCcceEEC
Confidence 4 567889999999999985321 35789886
No 37
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=96.64 E-value=0.021 Score=51.49 Aligned_cols=102 Identities=14% Similarity=0.144 Sum_probs=69.0
Q ss_pred EEEEEEeecCCCCCcC--CCCceEEEEeccCCCcccccccceee--eeccccceeEEEEeec-----cccEEEEEEecCC
Q 010105 335 VFVEIVAVKNLPEDHK--DKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCEA-----TGELLFELVSHST 405 (518)
Q Consensus 335 v~l~iv~~~nl~~~~~--~~~~lfVr~~~~q~d~~~~~~~~~~i--~s~s~~~~~~~l~CE~-----t~~lv~elr~~~~ 405 (518)
+.|.|++++||+.... ...+-||+++....+.-. .+ +-.+ +.++.|++.+.|+.-+ ...|.|++..+..
T Consensus 18 L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~-~k-T~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~ 95 (128)
T cd08388 18 LLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHK-VK-TRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR 95 (128)
T ss_pred EEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCce-ee-ccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCC
Confidence 7778899999985321 335889999864222111 01 1122 4567999999995332 2356777766533
Q ss_pred CCccCCCCcccceeEEeecccccCCCCCceEEEEEeecc
Q 010105 406 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 444 (518)
Q Consensus 406 ~~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~ 444 (518)
+++..+||.+.|++.++--. ...+++-|++|.|
T Consensus 96 -----~~~d~~lG~~~i~L~~l~~~-~~~~~~~~~~~~~ 128 (128)
T cd08388 96 -----YSRDDVIGEVVCPLAGADLL-NEGELLVSREIQP 128 (128)
T ss_pred -----CCCCceeEEEEEeccccCCC-CCceEEEEEeccC
Confidence 46778999999999999643 4688999999865
No 38
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=96.61 E-value=0.016 Score=51.18 Aligned_cols=102 Identities=17% Similarity=0.259 Sum_probs=67.8
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCcccccccceee---eeccccceeEEEEeec----cccEEEEEEecCCC
Q 010105 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA----TGELLFELVSHSTS 406 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~~~i---~s~s~~~~~~~l~CE~----t~~lv~elr~~~~~ 406 (518)
+.|.|++++||+... ....+-||+++....... ....+..+ +.++.|++.+.|.... +..|.+++..+..
T Consensus 18 L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~-~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~- 95 (127)
T cd04030 18 LIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSK-STRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKS- 95 (127)
T ss_pred EEEEEEEEECCCCccCCCCCCceEEEEEEcCCCC-CceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCc-
Confidence 778899999997442 245688999996532111 11112223 4567899999999863 3456666655433
Q ss_pred CccCCCCcccceeEEeecccccCCCCCceEEEEEeec
Q 010105 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLV 443 (518)
Q Consensus 407 ~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~ 443 (518)
++ .++...||.+.|+..++.. .-..+.|+.|.
T Consensus 96 ~~--~~~~~~iG~~~i~l~~l~~---~~~~~~W~~L~ 127 (127)
T cd04030 96 FL--SREKKLLGQVLIDLSDLDL---SKGFTQWYDLT 127 (127)
T ss_pred cc--CCCCceEEEEEEecccccc---cCCccceEECc
Confidence 21 2678899999999999854 34678999863
No 39
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=96.61 E-value=0.033 Score=49.07 Aligned_cols=106 Identities=16% Similarity=0.213 Sum_probs=69.9
Q ss_pred EEEEEEeecCCCCC-c--CCCCceEEEEeccCCCcccccccceeeeeccccceeEEEEee--ccccEEEEEEecCCCCcc
Q 010105 335 VFVEIVAVKNLPED-H--KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE--ATGELLFELVSHSTSKIP 409 (518)
Q Consensus 335 v~l~iv~~~nl~~~-~--~~~~~lfVr~~~~q~d~~~~~~~~~~i~s~s~~~~~~~l~CE--~t~~lv~elr~~~~~~l~ 409 (518)
+.|.|++++||+.. . ....+-||.++..+ ..... +...=+.++.|++.+.|... ....|.|++.-+..
T Consensus 3 l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~--~~~kT-~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~---- 75 (128)
T cd04024 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA--QRFKT-QTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDR---- 75 (128)
T ss_pred EEEEEEEeeCCCcccCCCCCCcCCeEEEEECC--EEEec-ceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCC----
Confidence 45778999999743 2 22346688877431 11110 11112457789999999887 36788888765543
Q ss_pred CCCCcccceeEEeecccccCCCCCceEEEEEeeccCCCC
Q 010105 410 MTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGN 448 (518)
Q Consensus 410 ~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~ 448 (518)
+.+...||.++|++.++......=..+.|+.|.+++..
T Consensus 76 -~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~ 113 (128)
T cd04024 76 -FAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPG 113 (128)
T ss_pred -CCCCCcceEEEEEHHHhhcccccCccceeEEccCcccC
Confidence 34668999999999999853112236899999887443
No 40
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=96.60 E-value=0.02 Score=51.89 Aligned_cols=102 Identities=17% Similarity=0.183 Sum_probs=67.5
Q ss_pred EEEEEEeecCCCCCc-C-CCCceEEEEeccCCCcccccccceee---eeccccceeEEEEeec----cccEEEEEEecCC
Q 010105 335 VFVEIVAVKNLPEDH-K-DKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA----TGELLFELVSHST 405 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~-~~~~lfVr~~~~q~d~~~~~~~~~~i---~s~s~~~~~~~l~CE~----t~~lv~elr~~~~ 405 (518)
+.|.|++++||+... . ...+-||+++......... +++..+ +.++-|++.+.|.... ...|.+.+..+..
T Consensus 17 L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~-k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~ 95 (128)
T cd08392 17 LEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNS-KRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRT 95 (128)
T ss_pred EEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccc-eeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCC
Confidence 667789999997542 1 3458899999763222111 112222 4567899999999763 3466666665433
Q ss_pred CCccCCCCcccceeEEeecccccCCCCCceEEEEEee
Q 010105 406 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 442 (518)
Q Consensus 406 ~~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l 442 (518)
+++...||.+.|++.++--+..+=..-+|+.|
T Consensus 96 -----~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 96 -----LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred -----CcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 57889999999999999443223455678876
No 41
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=96.57 E-value=0.026 Score=49.87 Aligned_cols=105 Identities=12% Similarity=0.133 Sum_probs=72.2
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCcccccccceee--eeccccceeEEEEee-c-----cccEEEEEEecCC
Q 010105 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-A-----TGELLFELVSHST 405 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~~~i--~s~s~~~~~~~l~CE-~-----t~~lv~elr~~~~ 405 (518)
+.|.|++++||+... ....+-||.++....++. +.++.. +.++.|++.+.|++. + ...|.||+..+..
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~---~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQ---STPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECCCccc---ccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 456789999998442 234677999886431221 111211 356799999999998 4 4688889888655
Q ss_pred CCccCCCCcccceeEEeecccccCCCCC--ceEEEEEeeccCCC
Q 010105 406 SKIPMTGASKTMGTASLSLQNFISPISK--LAVEQWFDLVPRSG 447 (518)
Q Consensus 406 ~~l~~~~~sk~lG~~s~~w~dll~~~~~--Ls~E~w~~l~~~~~ 447 (518)
+++..+||.+.|+..+++...+. -....|+.|..++|
T Consensus 79 -----~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g 117 (125)
T cd04051 79 -----SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG 117 (125)
T ss_pred -----CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC
Confidence 35677899999999999986421 02567999986543
No 42
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=96.55 E-value=0.02 Score=53.41 Aligned_cols=104 Identities=14% Similarity=0.231 Sum_probs=68.9
Q ss_pred EEEEEEeecCCCCCcCCCCceEEEEeccCCCcccccccceee---eeccccceeEEEEee------------c-----cc
Q 010105 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCE------------A-----TG 394 (518)
Q Consensus 335 v~l~iv~~~nl~~~~~~~~~lfVr~~~~q~d~~~~~~~~~~i---~s~s~~~~~~~l~CE------------~-----t~ 394 (518)
+.|.+++++||+... -..+=||.++...+.+... +.+..+ +.++.|++.+.|.+. + ..
T Consensus 2 L~V~Vi~ArnL~~~~-g~sDPYV~V~l~~~~~k~~-~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLALKN-GTCDPYASVTLIYSNKKQD-TKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCCCC-CCCCceEEEEEeCCcccCc-ccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 578899999998732 2357798888553221111 111222 346789999999994 1 13
Q ss_pred cEEEEEEecCCCCccCCCCcccceeEEeecccccCCCCCceEEEEEeeccCCC
Q 010105 395 ELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSG 447 (518)
Q Consensus 395 ~lv~elr~~~~~~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~ 447 (518)
.|.+++..+.. ++...+||.+.|+..++... .=....|+.|.+.++
T Consensus 80 ~L~i~V~d~~~-----~~~ddfLG~v~i~l~~l~~~--~~~~~~W~~L~~~~~ 125 (148)
T cd04010 80 ELRVDLWHASM-----GGGDVFLGEVRIPLRGLDLQ--AGSHQAWYFLQPREE 125 (148)
T ss_pred EEEEEEEcCCC-----CCCCceeEEEEEeccccccc--CCcCcceeecCCccc
Confidence 46666655443 46788999999999998863 123589999988754
No 43
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=96.55 E-value=0.02 Score=52.35 Aligned_cols=104 Identities=17% Similarity=0.234 Sum_probs=71.4
Q ss_pred EEEEEeecCCCCCcCCCCceEEEEeccCCCcccccccceee--eeccccceeEEEEeec-----------------cccE
Q 010105 336 FVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCEA-----------------TGEL 396 (518)
Q Consensus 336 ~l~iv~~~nl~~~~~~~~~lfVr~~~~q~d~~~~~~~~~~i--~s~s~~~~~~~l~CE~-----------------t~~l 396 (518)
.|.|++++||+.......+-||+++...++.... .++..+ +..+.|++.+.|.+-. ...+
T Consensus 2 ~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~-~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 2 SVRVLECRDLALKSNGTCDPFARVTLNYSSKTDT-KRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred EEEEEEccCCCcccCCCCCcEEEEEEecCCcCCe-eccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 4678999999755223467899998764322111 112222 4577999999999763 2356
Q ss_pred EEEEEecCCCCccCCCCcccceeEEeecccccCCCCCceEEEEEeeccCCCC
Q 010105 397 LFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGN 448 (518)
Q Consensus 397 v~elr~~~~~~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~ 448 (518)
.||+..... +++...||.+.|+++++... -..+.|+.|.+++..
T Consensus 81 ~i~V~d~~~-----~~~~~~IG~~~i~l~~l~~~---~~~~~W~~L~~~~~~ 124 (137)
T cd08675 81 RVELWHASM-----VSGDDFLGEVRIPLQGLQQA---GSHQAWYFLQPREAP 124 (137)
T ss_pred EEEEEcCCc-----CcCCcEEEEEEEehhhccCC---CcccceEecCCcCCC
Confidence 667665543 45788999999999999853 357999999998754
No 44
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=96.55 E-value=0.028 Score=48.78 Aligned_cols=103 Identities=18% Similarity=0.289 Sum_probs=71.1
Q ss_pred EEEEEeecCCCCCcC-CCCceEEEEeccCCCcccccccceeeeeccccceeEEEEeec--cccEEEEEEecCCCCccCCC
Q 010105 336 FVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA--TGELLFELVSHSTSKIPMTG 412 (518)
Q Consensus 336 ~l~iv~~~nl~~~~~-~~~~lfVr~~~~q~d~~~~~~~~~~i~s~s~~~~~~~l~CE~--t~~lv~elr~~~~~~l~~~~ 412 (518)
.|.|++++|++.... ...+-||+++... ..... .+...-+.++.|++.+.|.+.. ...+.|++..+.. ++
T Consensus 2 ~v~vi~a~~L~~~~~~~~~dpyv~v~~~~-~~~~~-T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~-----~~ 74 (115)
T cd04040 2 TVDVISAENLPSADRNGKSDPFVKFYLNG-EKVFK-TKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDR-----GG 74 (115)
T ss_pred EEEEEeeeCCCCCCCCCCCCCeEEEEECC-Cccee-eceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCC-----CC
Confidence 467899999985432 2346689888642 11111 0111124567999999999863 3578888877654 45
Q ss_pred CcccceeEEeecccccCCCCCceEEEEEeeccCCCC
Q 010105 413 ASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGN 448 (518)
Q Consensus 413 ~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~ 448 (518)
+.+.||.+.+++.++.. .-..+.|++|.++++.
T Consensus 75 ~~~~iG~~~~~l~~l~~---~~~~~~~~~L~~~g~~ 107 (115)
T cd04040 75 KDDLLGSAYIDLSDLEP---EETTELTLPLDGQGGG 107 (115)
T ss_pred CCCceEEEEEEHHHcCC---CCcEEEEEECcCCCCc
Confidence 77899999999999986 3457999999988665
No 45
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=96.52 E-value=0.015 Score=51.81 Aligned_cols=103 Identities=10% Similarity=0.103 Sum_probs=70.9
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCCCcccccccceeeeeccccceeEEEEee-ccccEEEEEEecCCCCccCCC
Q 010105 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTG 412 (518)
Q Consensus 335 v~l~iv~~~nl~~~-~~~~~~lfVr~~~~q~d~~~~~~~~~~i~s~s~~~~~~~l~CE-~t~~lv~elr~~~~~~l~~~~ 412 (518)
+.|.|++++|++.. .....+-||+++.. ...... .+...-+.++.|++.+.|.+. +...+.||+-.+.. +.
T Consensus 3 L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~-~~~~~k-T~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~-----~~ 75 (120)
T cd04045 3 LRLHIRKANDLKNLEGVGKIDPYVRVLVN-GIVKGR-TVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEK-----VG 75 (120)
T ss_pred EEEEEEeeECCCCccCCCCcCCEEEEEEC-CEEeec-eeEECCCcCCccCceEEEEecCCCCEEEEEEEECCC-----CC
Confidence 55778999998753 22335679998853 111111 011122457899999999887 56788999876654 35
Q ss_pred CcccceeEEeecccccCCCCCceEEEEEeeccCCCC
Q 010105 413 ASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGN 448 (518)
Q Consensus 413 ~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~ 448 (518)
+...||.+.|++.++.+. +.+.|+.|..++.+
T Consensus 76 ~d~~IG~~~~~l~~l~~~----~~~~~~~~~~~~~~ 107 (120)
T cd04045 76 KDRSLGSVEINVSDLIKK----NEDGKYVEYDDEEE 107 (120)
T ss_pred CCCeeeEEEEeHHHhhCC----CCCceEEecCCCcc
Confidence 567899999999999974 56999998776544
No 46
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=96.51 E-value=0.039 Score=49.53 Aligned_cols=103 Identities=12% Similarity=0.183 Sum_probs=68.6
Q ss_pred EEEEEEeecCCCCCcC-----------CCCceEEEEeccCCCcccccccceeeeeccccceeEEEEeeccccEEEEEEec
Q 010105 335 VFVEIVAVKNLPEDHK-----------DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEATGELLFELVSH 403 (518)
Q Consensus 335 v~l~iv~~~nl~~~~~-----------~~~~lfVr~~~~q~d~~~~~~~~~~i~s~s~~~~~~~l~CE~t~~lv~elr~~ 403 (518)
+.|.|+.++||+.... ...+-||.++.. +...... +...-+.++.|++.+.|.+.....+.|++..+
T Consensus 6 l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~-~~~~~kT-~~~~~t~~P~Wne~f~~~v~~~~~l~~~v~d~ 83 (132)
T cd04014 6 LKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD-DTHIGKT-STKPKTNSPVWNEEFTTEVHNGRNLELTVFHD 83 (132)
T ss_pred EEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC-CEEEeEE-eEcCCCCCCCcceeEEEEcCCCCEEEEEEEeC
Confidence 6677899999863321 124678888753 1111100 01112456799999999997667788887544
Q ss_pred CCCCccCCCCcccceeEEeecccccCCCCCceEEEEEeeccC
Q 010105 404 STSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (518)
Q Consensus 404 ~~~~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~ 445 (518)
.. +++..+||.+.+++.++... ..-..+.|++|.+.
T Consensus 84 ~~-----~~~~~~iG~~~i~l~~l~~~-~~~~~~~w~~L~~~ 119 (132)
T cd04014 84 AA-----IGPDDFVANCTISFEDLIQR-GSGSFDLWVDLEPQ 119 (132)
T ss_pred CC-----CCCCceEEEEEEEhHHhccc-CCCcccEEEEccCC
Confidence 32 35668899999999999973 23457999999853
No 47
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=96.51 E-value=0.018 Score=52.81 Aligned_cols=102 Identities=20% Similarity=0.233 Sum_probs=68.4
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCcccccccceee---eeccccceeEEEEeec----cccEEEEEEecCCC
Q 010105 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA----TGELLFELVSHSTS 406 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~~~i---~s~s~~~~~~~l~CE~----t~~lv~elr~~~~~ 406 (518)
+.|.|++++||+... ....+.||+++.+..+.....+.+..+ +.++.|++.+.|.=.. +..|.|+|..+..
T Consensus 17 L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~- 95 (138)
T cd08408 17 LSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRK- 95 (138)
T ss_pred EEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCC-
Confidence 667789999997532 134688999997643322111122333 4567899999998542 4578888887765
Q ss_pred CccCCCCcccceeEEee-----------cccccCCCCCceEEEEEee
Q 010105 407 KIPMTGASKTMGTASLS-----------LQNFISPISKLAVEQWFDL 442 (518)
Q Consensus 407 ~l~~~~~sk~lG~~s~~-----------w~dll~~~~~Ls~E~w~~l 442 (518)
+++.+.||.++|+ |.++++. |...+++|-.|
T Consensus 96 ----~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~-~~~~v~~WH~l 137 (138)
T cd08408 96 ----MKRKEMIGWFSLGLNSSGEEEEEHWNEMKES-KGQQVCRWHTL 137 (138)
T ss_pred ----CCCCcEEEEEEECCcCCCchHHHHHHHHHhC-CCCEEeEeeec
Confidence 4677889998886 6666664 67777777653
No 48
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=96.48 E-value=0.013 Score=52.78 Aligned_cols=85 Identities=21% Similarity=0.216 Sum_probs=55.6
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCcccccccceee---eeccccceeEEEEeecc----ccEEEEEEecCCC
Q 010105 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEAT----GELLFELVSHSTS 406 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~~~i---~s~s~~~~~~~l~CE~t----~~lv~elr~~~~~ 406 (518)
|.|.|++++|++... ....+-||+++.........-+ +..+ +.++.|++.+.|.+... ..+.||+.-+..
T Consensus 17 l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~-kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~- 94 (136)
T cd08402 17 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKK-KTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDR- 94 (136)
T ss_pred EEEEEEEeeCCCcccCCCCCCCeEEEEEEECCccccee-eccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCC-
Confidence 677789999997532 1235679999865322111111 1222 44678999999998632 368888887654
Q ss_pred CccCCCCcccceeEEeecc
Q 010105 407 KIPMTGASKTMGTASLSLQ 425 (518)
Q Consensus 407 ~l~~~~~sk~lG~~s~~w~ 425 (518)
+++...||.++|+..
T Consensus 95 ----~~~~~~iG~~~i~~~ 109 (136)
T cd08402 95 ----IGKNDPIGKVVLGCN 109 (136)
T ss_pred ----CCCCceeEEEEECCc
Confidence 456789999999654
No 49
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=96.45 E-value=0.02 Score=52.58 Aligned_cols=101 Identities=20% Similarity=0.274 Sum_probs=67.3
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCcccccccceee---eeccccceeEEEEeec----cccEEEEEEecCCC
Q 010105 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA----TGELLFELVSHSTS 406 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~~~i---~s~s~~~~~~~l~CE~----t~~lv~elr~~~~~ 406 (518)
+.|.|++++||+... ....+-||.++.....+.+. +.+..+ +.++.|++.+.|.-.. ...|.|++..+..
T Consensus 17 L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~-k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~- 94 (136)
T cd08406 17 LTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKIS-KKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE- 94 (136)
T ss_pred EEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCcccc-ccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC-
Confidence 778889999998532 23468899999763222221 112222 4577999999998653 3467777777654
Q ss_pred CccCCCCcccceeEEee----------cccccCCCCCceEEEEEee
Q 010105 407 KIPMTGASKTMGTASLS----------LQNFISPISKLAVEQWFDL 442 (518)
Q Consensus 407 ~l~~~~~sk~lG~~s~~----------w~dll~~~~~Ls~E~w~~l 442 (518)
+++...||.+.|. |.+++.. +.-.+++|=.|
T Consensus 95 ----~~~~~~iG~v~lg~~~~g~~~~hW~~ml~~-~~~~v~~WH~l 135 (136)
T cd08406 95 ----DGKTPNVGHVIIGPAASGMGLSHWNQMLAS-LRKPVAMWHPL 135 (136)
T ss_pred ----CCCCCeeEEEEECCCCCChhHHHHHHHHHC-CCCeeeEeeec
Confidence 4567889999987 6777765 57777777543
No 50
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=96.45 E-value=0.021 Score=51.04 Aligned_cols=105 Identities=18% Similarity=0.245 Sum_probs=70.0
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCC--CcccccccceeeeeccccceeEEEEee-c--cccEEEEEEecCCCCc
Q 010105 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQP--DIFFNAKQKLTILSKSGMKQVASFQCE-A--TGELLFELVSHSTSKI 408 (518)
Q Consensus 335 v~l~iv~~~nl~~~-~~~~~~lfVr~~~~q~--d~~~~~~~~~~i~s~s~~~~~~~l~CE-~--t~~lv~elr~~~~~~l 408 (518)
+.|.|+.++|++.. .....+-||+++.... +....-.+.+.=+..+.|++.+.|... + ...+.|++..+..
T Consensus 15 l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~--- 91 (131)
T cd04026 15 LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR--- 91 (131)
T ss_pred EEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC---
Confidence 67889999999853 2223567888886421 111110011111456799999999865 3 2467777776543
Q ss_pred cCCCCcccceeEEeecccccCCCCCceEEEEEeeccCCCC
Q 010105 409 PMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGN 448 (518)
Q Consensus 409 ~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~ 448 (518)
+.+...||.+.+++.++... ..+.|++|...+.+
T Consensus 92 --~~~~~~iG~~~~~l~~l~~~----~~~~w~~L~~~~~~ 125 (131)
T cd04026 92 --TTRNDFMGSLSFGVSELIKM----PVDGWYKLLNQEEG 125 (131)
T ss_pred --CCCcceeEEEEEeHHHhCcC----ccCceEECcCcccc
Confidence 45778999999999999853 68999999776543
No 51
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=96.44 E-value=0.026 Score=50.50 Aligned_cols=100 Identities=14% Similarity=0.206 Sum_probs=68.3
Q ss_pred EEEEEEeecCCCCCcC-CCCceEEEEeccCCC-cccccccceeeeeccccceeEEEEeec-----cccEEEEEEecCCCC
Q 010105 335 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPD-IFFNAKQKLTILSKSGMKQVASFQCEA-----TGELLFELVSHSTSK 407 (518)
Q Consensus 335 v~l~iv~~~nl~~~~~-~~~~lfVr~~~~q~d-~~~~~~~~~~i~s~s~~~~~~~l~CE~-----t~~lv~elr~~~~~~ 407 (518)
+.|.|++++||+.... ....-||++...... ... +.++.=..++-|++.+.|+..+ ...|.|+|..+..
T Consensus 18 L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~--kTkv~~~~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~-- 93 (124)
T cd08389 18 LTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRA--KTKVQRGPNPVFNETFTFSRVEPEELNNMALRFRLYGVER-- 93 (124)
T ss_pred EEEEEEEecCCCchhcCCCCCcEEEEEEccCCccee--ecccccCCCCcccCEEEECCCCHHHhccCEEEEEEEECCC--
Confidence 6788999999985422 224679998754221 111 1111112577899999998542 3468888888754
Q ss_pred ccCCCCcccceeEEeecccccCCCCCceEEEEEeecc
Q 010105 408 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 444 (518)
Q Consensus 408 l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~ 444 (518)
++....||.+.|+++++--. =....|+.|.|
T Consensus 94 ---~~~~~~lG~~~i~L~~l~~~---~~~~~w~~L~p 124 (124)
T cd08389 94 ---MRKERLIGEKVVPLSQLNLE---GETTVWLTLEP 124 (124)
T ss_pred ---cccCceEEEEEEeccccCCC---CCceEEEeCCC
Confidence 56788999999999999432 25888999865
No 52
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=96.43 E-value=0.041 Score=47.93 Aligned_cols=99 Identities=16% Similarity=0.266 Sum_probs=67.4
Q ss_pred EEEEEEeecCCCCCcC-------CCCceEEEEeccCCCcccccccceeeeeccccceeEEEEeec--cccEEEEEEecCC
Q 010105 335 VFVEIVAVKNLPEDHK-------DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA--TGELLFELVSHST 405 (518)
Q Consensus 335 v~l~iv~~~nl~~~~~-------~~~~lfVr~~~~q~d~~~~~~~~~~i~s~s~~~~~~~l~CE~--t~~lv~elr~~~~ 405 (518)
+.|.|++++||+.... ...+-||.++..+ ...+. +...=+.++-|++.+.|.+.. ...+.|++..+..
T Consensus 3 l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~--~~~kT-~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~ 79 (121)
T cd08391 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA--QTFKS-KVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDP 79 (121)
T ss_pred EEEEEEEccCCcccccccccCCCCCcCCEEEEEECC--EeEEc-cccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCC
Confidence 5677899999985421 1246788887543 11111 111114567899999998863 5677777765543
Q ss_pred CCccCCCCcccceeEEeecccccCCCCCceEEEEEeeccC
Q 010105 406 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (518)
Q Consensus 406 ~~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~ 445 (518)
+ +...||.+.|++.++... . ..+.|++|.+.
T Consensus 80 -----~-~~~~iG~~~i~l~~l~~~--~-~~~~w~~L~~~ 110 (121)
T cd08391 80 -----D-KDDFLGRLSIDLGSVEKK--G-FIDEWLPLEDV 110 (121)
T ss_pred -----C-CCCcEEEEEEEHHHhccc--C-ccceEEECcCC
Confidence 3 567899999999999874 2 36999999764
No 53
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=96.42 E-value=0.029 Score=49.56 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=68.0
Q ss_pred EEEEEEEeecCCCCC-cCCCCceEEEEeccCCCcccccccceee---eeccccceeEEEEeec-----cccEEEEEEecC
Q 010105 334 EVFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA-----TGELLFELVSHS 404 (518)
Q Consensus 334 ev~l~iv~~~nl~~~-~~~~~~lfVr~~~~q~d~~~~~~~~~~i---~s~s~~~~~~~l~CE~-----t~~lv~elr~~~ 404 (518)
.+.|.|++++|++.. .....+-||+++....+... .+..+ +.++.|++.+.|...+ ...|.|++.-+.
T Consensus 17 ~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~---~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d 93 (125)
T cd08386 17 TLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHK---LETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD 93 (125)
T ss_pred EEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcc---eeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC
Confidence 367888999999743 22335779999864222111 12222 3467999999987432 235788887665
Q ss_pred CCCccCCCCcccceeEEeecccccCCCCCceEEEEEeecc
Q 010105 405 TSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 444 (518)
Q Consensus 405 ~~~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~ 444 (518)
. +++...||.++|++.++.. .-..+.|++|.|
T Consensus 94 ~-----~~~~~~iG~~~i~l~~l~~---~~~~~~W~~l~~ 125 (125)
T cd08386 94 R-----FSRNDPIGEVSLPLNKVDL---TEEQTFWKDLKP 125 (125)
T ss_pred C-----CcCCcEeeEEEEecccccC---CCCcceEEecCC
Confidence 4 4566789999999999874 346899999865
No 54
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=96.27 E-value=0.049 Score=47.84 Aligned_cols=99 Identities=16% Similarity=0.195 Sum_probs=66.2
Q ss_pred EEEEEEeecCCCCCc--CCCCceEEEEeccCCCcccccccceee---eeccccceeEEEEee--c--cccEEEEEEecCC
Q 010105 335 VFVEIVAVKNLPEDH--KDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCE--A--TGELLFELVSHST 405 (518)
Q Consensus 335 v~l~iv~~~nl~~~~--~~~~~lfVr~~~~q~d~~~~~~~~~~i---~s~s~~~~~~~l~CE--~--t~~lv~elr~~~~ 405 (518)
+.|.|++++|++... ....+-||.++....+... + +..+ +.++.|++.+.|.=. . ...+.|++..+..
T Consensus 16 L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~--~-~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~ 92 (123)
T cd08390 16 LTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRS--L-QSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR 92 (123)
T ss_pred EEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCc--e-EeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc
Confidence 667889999998542 2335779999864222211 1 2222 456789998888632 1 2457777765443
Q ss_pred CCccCCCCcccceeEEeecccccCCCCCceEEEEEeecc
Q 010105 406 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 444 (518)
Q Consensus 406 ~~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~ 444 (518)
.++..+||.+.|+++++.. ......|++|.|
T Consensus 93 -----~~~~~~iG~~~i~L~~l~~---~~~~~~w~~L~~ 123 (123)
T cd08390 93 -----FSRHCIIGHVLFPLKDLDL---VKGGVVWRDLEP 123 (123)
T ss_pred -----CCCCcEEEEEEEeccceec---CCCceEEEeCCC
Confidence 3567899999999999986 346679999864
No 55
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=96.21 E-value=0.026 Score=50.76 Aligned_cols=101 Identities=14% Similarity=0.210 Sum_probs=62.7
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCcccccccceee--eeccccceeEEEEeec--c--ccEEEEEEecCCCC
Q 010105 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCEA--T--GELLFELVSHSTSK 407 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~~~i--~s~s~~~~~~~l~CE~--t--~~lv~elr~~~~~~ 407 (518)
+.|.|++++|++... ....+-||+++..........+++..+ +.++.|++.+.|.+.. . ..|.|+|.-+..
T Consensus 16 L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~-- 93 (134)
T cd08403 16 LTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDR-- 93 (134)
T ss_pred EEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC--
Confidence 777889999998532 133688999986422111111111122 3467899999998863 2 258888887654
Q ss_pred ccCCCCcccceeEEeecccccCCCCCceEEEEEeeccC
Q 010105 408 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (518)
Q Consensus 408 l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~ 445 (518)
+++...||.+.|+-.. +.-..+.|.+|...
T Consensus 94 ---~~~~~~IG~~~l~~~~-----~~~~~~~w~~~~~~ 123 (134)
T cd08403 94 ---VGHNELIGVCRVGPNA-----DGQGREHWNEMLAN 123 (134)
T ss_pred ---CCCCceeEEEEECCCC-----CCchHHHHHHHHHC
Confidence 5667889999997431 12334556665444
No 56
>PLN02270 phospholipase D alpha
Probab=96.21 E-value=0.032 Score=64.48 Aligned_cols=128 Identities=12% Similarity=0.236 Sum_probs=91.6
Q ss_pred EEEEEEeecCCCCC-------------------cCCCCceEEEEeccCCCcccccccceeee---eccccceeEEEEee-
Q 010105 335 VFVEIVAVKNLPED-------------------HKDKGDLFVFFSKSQPDIFFNAKQKLTIL---SKSGMKQVASFQCE- 391 (518)
Q Consensus 335 v~l~iv~~~nl~~~-------------------~~~~~~lfVr~~~~q~d~~~~~~~~~~i~---s~s~~~~~~~l~CE- 391 (518)
+.|.|++++|||.. ++..+..||.....+. .+.++..|+ .++.|++.++.+|-
T Consensus 10 l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a----~v~rtr~~~~~~~~p~w~e~f~i~~ah 85 (808)
T PLN02270 10 LHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKA----RVGRTRKIENEPKNPRWYESFHIYCAH 85 (808)
T ss_pred eEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCc----EEEEEeecCCCCCCCccccceEEeecc
Confidence 45567888888741 1122456666554321 123455554 36799999999999
Q ss_pred ccccEEEEEEecCCCCccCCCCcccceeEEeecccccCCCCCceEEEEEeeccCCCCCCCCCceEEEEEeecCCcchhhh
Q 010105 392 ATGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTIPTLAPHL 471 (518)
Q Consensus 392 ~t~~lv~elr~~~~~~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~~~~~p~~lrva~S~TppvqAp~~ 471 (518)
...+|+|-+--... =++.+||++.|+=++++.- -.+|+||++...++.--..-..|||.+.|||=.+.|+.
T Consensus 86 ~~~~v~f~vkd~~~------~g~~~ig~~~~p~~~~~~g---~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~ 156 (808)
T PLN02270 86 MASNIIFTVKDDNP------IGATLIGRAYIPVEEILDG---EEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKDRNW 156 (808)
T ss_pred CcceEEEEEecCCc------cCceEEEEEEEEHHHhcCC---CccccEEeccCCCCCcCCCCCEEEEEEEEEEcccCcch
Confidence 88999999865443 2456999999999999963 36999999987765544445789999999998888887
Q ss_pred hhhc
Q 010105 472 LRMV 475 (518)
Q Consensus 472 l~~v 475 (518)
=+-|
T Consensus 157 ~~gv 160 (808)
T PLN02270 157 GRGI 160 (808)
T ss_pred hccc
Confidence 6666
No 57
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=96.18 E-value=0.03 Score=49.48 Aligned_cols=100 Identities=17% Similarity=0.233 Sum_probs=68.9
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCcccccccceee--eeccccceeEEEEee-c----cccEEEEEEecCCC
Q 010105 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-A----TGELLFELVSHSTS 406 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~~~i--~s~s~~~~~~~l~CE-~----t~~lv~elr~~~~~ 406 (518)
+.|.|++++||+... ....+-||.++... .. . +.++.- +.++.|++.+.|.+. + ...|.|++..+..
T Consensus 3 L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~-~~-~--~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~- 77 (124)
T cd04049 3 LEVLLISAKGLQDTDFLGKIDPYVIIQCRT-QE-R--KSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN- 77 (124)
T ss_pred EEEEEEecCCCCCCCCCCCcCceEEEEECC-Ee-e--eeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc-
Confidence 567789999997432 22356688887431 11 1 111111 346799999999998 4 3567778766554
Q ss_pred CccCCCCcccceeEEeecccccCCCCCceEEEEEeeccCC
Q 010105 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRS 446 (518)
Q Consensus 407 ~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~ 446 (518)
+++.++||.+.|++.+++... ..+.|++|.|.+
T Consensus 78 ----~~~d~~iG~~~i~l~~l~~~~---~~~~~~~l~p~~ 110 (124)
T cd04049 78 ----FSDDDFIGEATIHLKGLFEEG---VEPGTAELVPAK 110 (124)
T ss_pred ----CCCCCeEEEEEEEhHHhhhCC---CCcCceEeeccc
Confidence 456789999999999999753 459999999864
No 58
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=96.18 E-value=0.094 Score=45.46 Aligned_cols=111 Identities=21% Similarity=0.199 Sum_probs=65.0
Q ss_pred EEEEEEeecCCCCCcCCCCceEEEEeccCCCcccccccceeeeeccccceeEEEEeecc----ccEEEEEEecCCCCccC
Q 010105 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEAT----GELLFELVSHSTSKIPM 410 (518)
Q Consensus 335 v~l~iv~~~nl~~~~~~~~~lfVr~~~~q~d~~~~~~~~~~i~s~s~~~~~~~l~CE~t----~~lv~elr~~~~~~l~~ 410 (518)
+.|.|++++|++... ..+-||.++... ......+ ...= .++.|++.+.|.+-.. ..|.+++..+. +
T Consensus 2 L~v~vi~a~~l~~~~--~~dpyv~v~~~~-~~~~kT~-~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~-~---- 71 (117)
T cd08383 2 LRLRILEAKNLPSKG--TRDPYCTVSLDQ-VEVARTK-TVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKR-S---- 71 (117)
T ss_pred eEEEEEEecCCCcCC--CCCceEEEEECC-EEeEecc-eEEC-CCCcccceEEEecCCccccEEEEEEEEEecc-c----
Confidence 457799999998753 367899887532 1212111 1112 5788999999988652 34555554433 2
Q ss_pred CCCcccceeEEeecccccCCCCCceEEEEEeeccCCCCCCCCCceEEEEEe
Q 010105 411 TGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVS 461 (518)
Q Consensus 411 ~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~~~~~p~~lrva~S 461 (518)
..+...+|++.|. ++.. .-..|.|++|.+.++ .....=.|++.++
T Consensus 72 ~~~~~~~g~v~l~--~~~~---~~~~~~w~~L~~~~~-~~~~~G~l~l~~~ 116 (117)
T cd08383 72 KDRDIVIGKVALS--KLDL---GQGKDEWFPLTPVDP-DSEVQGSVRLRAR 116 (117)
T ss_pred CCCeeEEEEEEec--CcCC---CCcceeEEECccCCC-CCCcCceEEEEEE
Confidence 2333455655554 4332 335799999998755 2222336666665
No 59
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=96.16 E-value=0.046 Score=48.28 Aligned_cols=90 Identities=10% Similarity=0.136 Sum_probs=60.8
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCcccccccc--eeeeeccccceeEEEEe---ec--cccEEEEEEecCCC
Q 010105 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQK--LTILSKSGMKQVASFQC---EA--TGELLFELVSHSTS 406 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~--~~i~s~s~~~~~~~l~C---E~--t~~lv~elr~~~~~ 406 (518)
+.|.|++++|++... ....+-||+++....+......++ ..-+.++.|++.+.|+. +. ..-+.|++..+..
T Consensus 17 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~- 95 (123)
T cd04035 17 LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDR- 95 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCC-
Confidence 778899999998542 234688999987533211111111 22256789999999962 21 3468888876643
Q ss_pred CccCCCCcccceeEEeecccccCC
Q 010105 407 KIPMTGASKTMGTASLSLQNFISP 430 (518)
Q Consensus 407 ~l~~~~~sk~lG~~s~~w~dll~~ 430 (518)
+ +...||.+.|++.+|...
T Consensus 96 ----~-~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 96 ----F-GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred ----c-CCeeEEEEEEEcccCCCC
Confidence 3 678999999999999964
No 60
>PLN03008 Phospholipase D delta
Probab=96.10 E-value=0.045 Score=63.58 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=78.4
Q ss_pred CceEEEEeccCCCcccccccceee--eeccccceeEEEEee-ccccEEEEEEecCCCCccCCCCcccceeEEeecccccC
Q 010105 353 GDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFIS 429 (518)
Q Consensus 353 ~~lfVr~~~~q~d~~~~~~~~~~i--~s~s~~~~~~~l~CE-~t~~lv~elr~~~~~~l~~~~~sk~lG~~s~~w~dll~ 429 (518)
++.||.+..- +... .++..+ +-++.|++.++|+|. +...|+|++--.-. ++ ..+||.++|+.++|+.
T Consensus 77 SDPYV~I~Lg--~~rv--~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~-----~g-aD~IG~a~IPL~~L~~ 146 (868)
T PLN03008 77 SDPYVTVVVP--QATL--ARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDV-----FG-AQIIGTAKIPVRDIAS 146 (868)
T ss_pred CCceEEEEEC--Ccce--eeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCc-----cC-CceeEEEEEEHHHcCC
Confidence 4678887762 2211 112223 236799999999999 67799999876444 33 4789999999999885
Q ss_pred CCCCceEEEEEeeccCCCCCCCCCceEEEEEeecCCcchhhhhhhc
Q 010105 430 PISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTIPTLAPHLLRMV 475 (518)
Q Consensus 430 ~~~~Ls~E~w~~l~~~~~~~~~~p~~lrva~S~TppvqAp~~l~~v 475 (518)
.-.+++|++|...++.-...-..|||.+.++|=-+-|+-=+-|
T Consensus 147 ---Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~~~~~~~gv 189 (868)
T PLN03008 147 ---GERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQIHSYRCGI 189 (868)
T ss_pred ---CCceEEEEEccccCCCCCCCCcEEEEEEEEEEccccccccccc
Confidence 4568999999887763333336899999999987777554444
No 61
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=96.03 E-value=0.057 Score=48.32 Aligned_cols=104 Identities=18% Similarity=0.154 Sum_probs=70.4
Q ss_pred EEEEEEEeecCCCCCcCCCCceEEEEeccCCCcccccccc-eeeeeccccceeEEEEeeccccEEEEEEecCCCCccCCC
Q 010105 334 EVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQK-LTILSKSGMKQVASFQCEATGELLFELVSHSTSKIPMTG 412 (518)
Q Consensus 334 ev~l~iv~~~nl~~~~~~~~~lfVr~~~~q~d~~~~~~~~-~~i~s~s~~~~~~~l~CE~t~~lv~elr~~~~~~l~~~~ 412 (518)
++.|.|++++..+.......+-||+++.. ..... +.+ ..-+.++.|++.+.|.+.....+.||+.-+.. .+
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~-~~~~~--kT~v~~~t~~P~Wne~f~~~~~~~~~l~~~V~d~~~-----~~ 74 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVD-GQPPK--KTEVSKKTSNPKWNEHFTVLVTPQSTLEFKVWSHHT-----LK 74 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEEC-CcccE--EeeeeCCCCCCccccEEEEEeCCCCEEEEEEEeCCC-----CC
Confidence 46777888875544333346779998753 11111 111 11145779999999999877889999877654 46
Q ss_pred CcccceeEEeecccccCCCCCceEE---EEEeeccCC
Q 010105 413 ASKTMGTASLSLQNFISPISKLAVE---QWFDLVPRS 446 (518)
Q Consensus 413 ~sk~lG~~s~~w~dll~~~~~Ls~E---~w~~l~~~~ 446 (518)
...+||.+.|++.+++... ....+ .|++|+.++
T Consensus 75 ~~~~iG~~~i~l~~l~~~~-~~~~~~~~~~~~~~~~~ 110 (125)
T cd04021 75 ADVLLGEASLDLSDILKNH-NGKLENVKLTLNLSSEN 110 (125)
T ss_pred CCcEEEEEEEEHHHhHhhc-CCCccceEEEEEEEccC
Confidence 6789999999999999753 44444 488887544
No 62
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=96.00 E-value=0.057 Score=48.34 Aligned_cols=100 Identities=14% Similarity=0.182 Sum_probs=66.2
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCcccccccceee---eeccccceeEEEEeec----cccEEEEEEecCCC
Q 010105 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA----TGELLFELVSHSTS 406 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~~~i---~s~s~~~~~~~l~CE~----t~~lv~elr~~~~~ 406 (518)
+.|.|++++|++... ....+-||+++....+.... ..+..+ +.++.|++.+.|.... +..|.|+|..+..
T Consensus 15 L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~-~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~- 92 (133)
T cd08384 15 LIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKS-KHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDI- 92 (133)
T ss_pred EEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccC-CceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCC-
Confidence 788899999998532 23467899999652111111 112223 4567999999999863 3568888886543
Q ss_pred CccCCCCcccceeEEeecccccCCCCCceEEEEEeeccC
Q 010105 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (518)
Q Consensus 407 ~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~ 445 (518)
.++...||.+.|+..+ ..-..+.|++|.++
T Consensus 93 ----~~~~~~lG~~~i~l~~-----~~~~~~~W~~~l~~ 122 (133)
T cd08384 93 ----GKSNDYIGGLQLGINA-----KGERLRHWLDCLKN 122 (133)
T ss_pred ----CCCccEEEEEEEecCC-----CCchHHHHHHHHhC
Confidence 3567899999999864 12245778877654
No 63
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=95.90 E-value=0.054 Score=48.81 Aligned_cols=87 Identities=17% Similarity=0.177 Sum_probs=56.9
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCCCcccccccceee---eeccccceeEEEE--eec--cccEEEEEEecCCC
Q 010105 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQ--CEA--TGELLFELVSHSTS 406 (518)
Q Consensus 335 v~l~iv~~~nl~~~-~~~~~~lfVr~~~~q~d~~~~~~~~~~i---~s~s~~~~~~~l~--CE~--t~~lv~elr~~~~~ 406 (518)
+.|.+++++||+.. .....+-||+++....+...... +..+ +.++.|++.+.|. .+. ...|.|++..+..
T Consensus 17 L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~-kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~- 94 (136)
T cd08405 17 ITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKK-KTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDR- 94 (136)
T ss_pred EEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccc-cCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCC-
Confidence 67788999999743 22346789999865333221111 2222 3467999988876 222 3568899988754
Q ss_pred CccCCCCcccceeEEeecccc
Q 010105 407 KIPMTGASKTMGTASLSLQNF 427 (518)
Q Consensus 407 ~l~~~~~sk~lG~~s~~w~dl 427 (518)
+++...||.++|++.+.
T Consensus 95 ----~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 95 ----LSRNDLIGKIYLGWKSG 111 (136)
T ss_pred ----CCCCcEeEEEEECCccC
Confidence 45668899999987653
No 64
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=95.88 E-value=0.055 Score=47.23 Aligned_cols=98 Identities=14% Similarity=0.154 Sum_probs=65.0
Q ss_pred EEEEEEeecCCCCCcC--CCCceEEEEeccCCCcccccccceeeeeccccceeEEEEeec-----cccEEEEEEecCCCC
Q 010105 335 VFVEIVAVKNLPEDHK--DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA-----TGELLFELVSHSTSK 407 (518)
Q Consensus 335 v~l~iv~~~nl~~~~~--~~~~lfVr~~~~q~d~~~~~~~~~~i~s~s~~~~~~~l~CE~-----t~~lv~elr~~~~~~ 407 (518)
+.|.|++++||+.... ...+-||.++.....+...-.+...-+.++.|++.+.|.+.. ...|.|++.-+..
T Consensus 3 L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~-- 80 (111)
T cd04041 3 LVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR-- 80 (111)
T ss_pred EEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC--
Confidence 5677899999985421 235779999854222211101111224567999999998874 3568888876654
Q ss_pred ccCCCCcccceeEEeecccccCCCCCceEEEEEeec
Q 010105 408 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLV 443 (518)
Q Consensus 408 l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~ 443 (518)
+++...||.++|++.+|+.. .+|.++.
T Consensus 81 ---~~~dd~lG~~~i~l~~l~~~------~~~~~~~ 107 (111)
T cd04041 81 ---FTADDRLGRVEIDLKELIED------RNWMGRR 107 (111)
T ss_pred ---CCCCCcceEEEEEHHHHhcC------CCCCccc
Confidence 45678999999999999964 4666654
No 65
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=95.85 E-value=0.05 Score=51.26 Aligned_cols=102 Identities=16% Similarity=0.122 Sum_probs=68.5
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCcccccccceee--eeccccceeEEEEeec-----cccEEEEEEecCCC
Q 010105 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCEA-----TGELLFELVSHSTS 406 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~~~i--~s~s~~~~~~~l~CE~-----t~~lv~elr~~~~~ 406 (518)
+.|.|++++||+... ....+=||.++....+......++-.+ +.++.|++.+.|.+-. ...|.|+|.-+..
T Consensus 29 L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~- 107 (162)
T cd04020 29 LHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDK- 107 (162)
T ss_pred EEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCC-
Confidence 788899999998543 233577999886533221111111122 4567999999998642 2357777776543
Q ss_pred CccCCCCcccceeEEeecccccCCCCCceEEEEEeecc
Q 010105 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 444 (518)
Q Consensus 407 ~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~ 444 (518)
+++..+||.+.|+..++... -..+.|++|..
T Consensus 108 ----~~~d~~lG~v~i~l~~~~~~---~~~~~w~~~~~ 138 (162)
T cd04020 108 ----LSSNDFLGGVRLGLGTGKSY---GQAVDWMDSTG 138 (162)
T ss_pred ----CCCCceEEEEEEeCCccccC---CCccccccCCh
Confidence 46788999999999998753 24689998753
No 66
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=95.83 E-value=0.14 Score=45.07 Aligned_cols=102 Identities=16% Similarity=0.254 Sum_probs=67.7
Q ss_pred EEEEEEeecCCCCCcC-CCCceEEEEeccCCCcccccccceeeeeccccceeEEEEee-c-cccEEEEEEecCCCCccCC
Q 010105 335 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-A-TGELLFELVSHSTSKIPMT 411 (518)
Q Consensus 335 v~l~iv~~~nl~~~~~-~~~~lfVr~~~~q~d~~~~~~~~~~i~s~s~~~~~~~l~CE-~-t~~lv~elr~~~~~~l~~~ 411 (518)
+.|.+++++||+.... ...+-||.++... ...+. +...-+.++.|++.+.|... + ...|.|++.-+.. +
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~--~~~kT-~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~-----~ 73 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNG--QTLET-SVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDL-----V 73 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECC--EEEec-eeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCC-----C
Confidence 4567899999974421 2346799988531 11110 01111456789998888876 3 3568888866543 4
Q ss_pred CCcccceeEEeecccccCCCCCceEEEEEeeccCCC
Q 010105 412 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSG 447 (518)
Q Consensus 412 ~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~ 447 (518)
++...||.++++..++... -..+.|++|.+...
T Consensus 74 ~~~~~iG~~~~~l~~l~~~---~~~~~w~~L~~~~~ 106 (123)
T cd04025 74 SKNDFLGKVVFSIQTLQQA---KQEEGWFRLLPDPR 106 (123)
T ss_pred CCCcEeEEEEEEHHHcccC---CCCCCEEECCCCCC
Confidence 5678999999999999753 23588999988643
No 67
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=95.80 E-value=0.076 Score=47.95 Aligned_cols=100 Identities=12% Similarity=0.191 Sum_probs=61.3
Q ss_pred EEEEEEEeecCCCCCc-CCCCceEEEEeccCCCcccccccceee---eeccccceeEEEEeec--cc--cEEEEEEecCC
Q 010105 334 EVFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA--TG--ELLFELVSHST 405 (518)
Q Consensus 334 ev~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~~~i---~s~s~~~~~~~l~CE~--t~--~lv~elr~~~~ 405 (518)
++.|.|++++||+... ....+-||+++.......+. +.+..+ +.++.|++.+.|.... .. .+.|++..+..
T Consensus 16 ~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~-~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~ 94 (136)
T cd08404 16 RLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRIS-KKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR 94 (136)
T ss_pred eEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceee-eEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCC
Confidence 4778899999997542 23357899998653222111 111222 3467899988888652 23 35556655543
Q ss_pred CCccCCCCcccceeEEeecccccCCCCCceEEEEEeecc
Q 010105 406 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 444 (518)
Q Consensus 406 ~~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~ 444 (518)
+++..+||.+.|+.++ ... ..+.|.+|..
T Consensus 95 -----~~~~~~iG~~~~~~~~-~~~----~~~~w~~l~~ 123 (136)
T cd08404 95 -----VTKNEVIGRLVLGPKA-SGS----GGHHWKEVCN 123 (136)
T ss_pred -----CCCCccEEEEEECCcC-CCc----hHHHHHHHHh
Confidence 4567899999998766 211 2466666644
No 68
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=95.79 E-value=0.19 Score=43.76 Aligned_cols=99 Identities=11% Similarity=0.245 Sum_probs=66.9
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCcccccccceeeeeccccceeEEEEee-ccccEEEEEEecCCCCccCCC
Q 010105 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTG 412 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~~~i~s~s~~~~~~~l~CE-~t~~lv~elr~~~~~~l~~~~ 412 (518)
+.|.|++++||+... ....+-||+++..+- . ... +...=+..+.|++.+.|.+. ....+.|++..+.. +.
T Consensus 3 l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-~-~~T-~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~-----~~ 74 (119)
T cd08377 3 LQVKVIRASGLAAADIGGKSDPFCVLELVNA-R-LQT-HTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDK-----DK 74 (119)
T ss_pred EEEEEEeeeCCCCCCCCCCCCcEEEEEECCE-e-eec-ceecCCcCCccCcEEEEEecCcCCEEEEEEEECCC-----CC
Confidence 457789999998532 223577999875421 1 110 01111356789999999986 36788888865543 35
Q ss_pred CcccceeEEeecccccCCCCCceEEEEEeeccCC
Q 010105 413 ASKTMGTASLSLQNFISPISKLAVEQWFDLVPRS 446 (518)
Q Consensus 413 ~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~ 446 (518)
+..+||.+.+++.++... .++|+.|.+..
T Consensus 75 ~~~~iG~~~~~l~~~~~~-----~~~~~~l~~~~ 103 (119)
T cd08377 75 KPEFLGKVAIPLLSIKNG-----ERKWYALKDKK 103 (119)
T ss_pred CCceeeEEEEEHHHCCCC-----CceEEECcccC
Confidence 678999999999998753 26899997653
No 69
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=95.77 E-value=0.29 Score=43.00 Aligned_cols=104 Identities=15% Similarity=0.181 Sum_probs=68.5
Q ss_pred EEEEEEEEeecCCCCCc---CCCCceEEEEeccCCCc--ccccccce-eeee-ccccceeEEEEee-cc-ccEEEEEEec
Q 010105 333 VEVFVEIVAVKNLPEDH---KDKGDLFVFFSKSQPDI--FFNAKQKL-TILS-KSGMKQVASFQCE-AT-GELLFELVSH 403 (518)
Q Consensus 333 ~ev~l~iv~~~nl~~~~---~~~~~lfVr~~~~q~d~--~~~~~~~~-~i~s-~s~~~~~~~l~CE-~t-~~lv~elr~~ 403 (518)
+.+.|.|++++|++... ....+.||.++....+. --..+.++ .-.+ ++-|++.+.|++. +. .-+.|++..+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 45788999999997532 23468899888642211 00011112 1133 7789999999977 32 3567776655
Q ss_pred CCCCccCCCCcccceeEEeecccccCCCCCceEEEEEeeccCCCC
Q 010105 404 STSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGN 448 (518)
Q Consensus 404 ~~~~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~ 448 (518)
.. + +.++||.+.++..++... .+|+.|..++|.
T Consensus 82 ~~-----~-~~~~iG~~~~~l~~l~~g------~~~~~l~~~~~~ 114 (128)
T cd00275 82 DS-----G-DDDFLGQACLPLDSLRQG------YRHVPLLDSKGE 114 (128)
T ss_pred CC-----C-CCcEeEEEEEEhHHhcCc------eEEEEecCCCCC
Confidence 43 3 668999999999999652 378999877665
No 70
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=95.70 E-value=0.091 Score=46.04 Aligned_cols=99 Identities=16% Similarity=0.270 Sum_probs=64.0
Q ss_pred EEEEEEeecCCCCCc--CCCCceEEEEeccCCCcccccccceee---eeccccceeEEEEeec----cccEEEEEEecCC
Q 010105 335 VFVEIVAVKNLPEDH--KDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA----TGELLFELVSHST 405 (518)
Q Consensus 335 v~l~iv~~~nl~~~~--~~~~~lfVr~~~~q~d~~~~~~~~~~i---~s~s~~~~~~~l~CE~----t~~lv~elr~~~~ 405 (518)
+.|.|++++||+... ....+-||+++....+.... +.+..+ +..+.|++.+.|.=.. ...+.|++..+..
T Consensus 16 L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~-~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~ 94 (123)
T cd08521 16 LEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQS-KRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDR 94 (123)
T ss_pred EEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCc-eeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 667789999997543 23467899998652211111 112222 4567899988876332 3467788765433
Q ss_pred CCccCCCCcccceeEEeecccccCCCCCceEEEEEee
Q 010105 406 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 442 (518)
Q Consensus 406 ~~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l 442 (518)
+++...||.+.|+.+++.- .-..+.|+.|
T Consensus 95 -----~~~~~~iG~~~i~l~~l~~---~~~~~~w~~l 123 (123)
T cd08521 95 -----FGRNTFLGEVEIPLDSWDL---DSQQSEWYPL 123 (123)
T ss_pred -----CcCCceeeEEEEecccccc---cCCCccEEEC
Confidence 4566899999999999953 2346888875
No 71
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=95.64 E-value=0.18 Score=44.65 Aligned_cols=115 Identities=14% Similarity=0.249 Sum_probs=72.7
Q ss_pred EEEEEEeecCCCCCcC-CCCceEEEEeccCCCcccccccceee--eeccccceeEEEEee-ccccEEEEEEecCCCCccC
Q 010105 335 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPM 410 (518)
Q Consensus 335 v~l~iv~~~nl~~~~~-~~~~lfVr~~~~q~d~~~~~~~~~~i--~s~s~~~~~~~l~CE-~t~~lv~elr~~~~~~l~~ 410 (518)
+.|.|+.++|++.... ...+-||.++.. +... .++-.+ +.++-|++.+.|.+- +..-+.|++..+..
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~-~~~~---~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~----- 72 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD-NEVI---IRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDT----- 72 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEEC-CEee---eeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCC-----
Confidence 5678999999975432 234668887743 1111 112223 346789998888886 34677777765443
Q ss_pred CCCcccceeEEeecccccCCCCCceEEEEEeeccCCCCCCCCCceEEEEEe
Q 010105 411 TGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVS 461 (518)
Q Consensus 411 ~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~~~~~p~~lrva~S 461 (518)
+++...||.+.|+.+++... .=.++.|++|.+.++.. ..+=.+.+.+|
T Consensus 73 ~~~d~~iG~~~~~~~~~~~~--~~~~~~W~~L~~~~~~~-~~~G~i~l~~~ 120 (121)
T cd04054 73 LSRDDVIGKVSLTREVISAH--PRGIDGWMNLTEVDPDE-EVQGEIHLELS 120 (121)
T ss_pred CCCCCEEEEEEEcHHHhccC--CCCCCcEEECeeeCCCC-ccccEEEEEEE
Confidence 35668899999999888753 22468999998754321 23334555544
No 72
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=95.63 E-value=0.15 Score=45.99 Aligned_cols=102 Identities=17% Similarity=0.094 Sum_probs=68.1
Q ss_pred EEEEEEeecCCCCCcCCCCceEEEEecc---CCCcccccccceee--eeccccceeEEEEeecc-----ccEEEEEEecC
Q 010105 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKS---QPDIFFNAKQKLTI--LSKSGMKQVASFQCEAT-----GELLFELVSHS 404 (518)
Q Consensus 335 v~l~iv~~~nl~~~~~~~~~lfVr~~~~---q~d~~~~~~~~~~i--~s~s~~~~~~~l~CE~t-----~~lv~elr~~~ 404 (518)
+.|.+++++||+.......+=||.++.. .+++.-. .++..+ +.++-|++.+.|..... ..|.|++.-+.
T Consensus 2 L~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k-~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 2 VTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRK-FATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred EEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccE-eeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 4577899999986432335779988864 2332111 111222 23678999999987532 24666676653
Q ss_pred CCCccCCCCcccceeEEeecccccCCCCCceEEEEEeeccC
Q 010105 405 TSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (518)
Q Consensus 405 ~~~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~ 445 (518)
+ +++..+||.+.|+++++.... ..+.|++|.+.
T Consensus 81 --~---~~~dd~IG~~~l~l~~~~~~~---~~~~w~~L~~~ 113 (120)
T cd08395 81 --F---ARDDRLVGVTVLQLRDIAQAG---SCACWLPLGRR 113 (120)
T ss_pred --c---cCCCCEEEEEEEEHHHCcCCC---cEEEEEECcCc
Confidence 3 567889999999999999653 57889999664
No 73
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=95.57 E-value=0.082 Score=42.25 Aligned_cols=95 Identities=17% Similarity=0.238 Sum_probs=65.4
Q ss_pred EEEEEeecCCCCC-cCCCCceEEEEeccCCCcccccccceee--eeccccceeEEEEeec--cccEEEEEEecCCCCccC
Q 010105 336 FVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCEA--TGELLFELVSHSTSKIPM 410 (518)
Q Consensus 336 ~l~iv~~~nl~~~-~~~~~~lfVr~~~~q~d~~~~~~~~~~i--~s~s~~~~~~~l~CE~--t~~lv~elr~~~~~~l~~ 410 (518)
.|.|+++++++.. .....+.||+++.... .. .++..+ +..+.|++.+.|.+.. ...+.||+..+.+
T Consensus 2 ~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~-~~---~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~----- 72 (102)
T cd00030 2 RVTVIEARNLPAKDLNGKSDPYVKVSLGGK-QK---FKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDR----- 72 (102)
T ss_pred EEEEEeeeCCCCcCCCCCCCcEEEEEeccC-ce---EecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCC-----
Confidence 4678899998752 2245788999886631 11 111222 3567899989998886 6789999988776
Q ss_pred CCCcccceeEEeecccccCCCCCceEEEEEe
Q 010105 411 TGASKTMGTASLSLQNFISPISKLAVEQWFD 441 (518)
Q Consensus 411 ~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~ 441 (518)
..+.+++|.+.++..++.. ..-..+.|++
T Consensus 73 ~~~~~~ig~~~~~l~~l~~--~~~~~~~~~~ 101 (102)
T cd00030 73 FSKDDFLGEVEIPLSELLD--SGKEGELWLP 101 (102)
T ss_pred CCCCceeEEEEEeHHHhhh--cCCcCcceec
Confidence 3467899999999999882 2334455554
No 74
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=95.40 E-value=0.33 Score=44.34 Aligned_cols=115 Identities=11% Similarity=0.122 Sum_probs=73.9
Q ss_pred EEEEEEEeecCCCCCc-CCCCceEEEEeccCCCcccccccceeeeeccccceeEEEEee-c-cccEEEEEEecCCCCccC
Q 010105 334 EVFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-A-TGELLFELVSHSTSKIPM 410 (518)
Q Consensus 334 ev~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~~~i~s~s~~~~~~~l~CE-~-t~~lv~elr~~~~~~l~~ 410 (518)
.+.|.|++++|++... ....+-||.++.. +...+- ....-+.++.|++.+.|... + ...+.||+..+..
T Consensus 16 ~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~--~~~~kT-~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~----- 87 (136)
T cd08375 16 RLMVVIVEGRDLKPCNSNGKSDPYCEVSMG--SQEHKT-KVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF----- 87 (136)
T ss_pred EEEEEEEEeeCCCCCCCCCCcCcEEEEEEC--CEeeec-cccCCCCCCccCceEEEEecCccCCEEEEEEEECCC-----
Confidence 4778899999997542 1235678988853 211110 01111456799999988885 2 3568888886643
Q ss_pred CCCcccceeEEeecccccC--CCCCceEEEEEeeccCCCCCCCCCceEEEEEee
Q 010105 411 TGASKTMGTASLSLQNFIS--PISKLAVEQWFDLVPRSGNVSSKPISLRIAVSF 462 (518)
Q Consensus 411 ~~~sk~lG~~s~~w~dll~--~~~~Ls~E~w~~l~~~~~~~~~~p~~lrva~S~ 462 (518)
+.+..+||.+.|++.+++. ..+.-.+.+|+.|.... .-.+++.++|
T Consensus 88 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~------~g~i~l~~~~ 135 (136)
T cd08375 88 FSPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVP------TGEVVVKLDL 135 (136)
T ss_pred CCCCCeeEEEEEEHHHhccccccCCCcEEEEecccccc------ceeEEEEEEe
Confidence 4566899999999999997 12344567888874321 2355665553
No 75
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=95.38 E-value=0.14 Score=41.45 Aligned_cols=90 Identities=21% Similarity=0.303 Sum_probs=62.8
Q ss_pred EEEEEEeecCCCCCcC-CCCceEEEEeccCCCcccccccceee-eeccccceeEEEEeec--cccEEEEEEecCCCCccC
Q 010105 335 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTI-LSKSGMKQVASFQCEA--TGELLFELVSHSTSKIPM 410 (518)
Q Consensus 335 v~l~iv~~~nl~~~~~-~~~~lfVr~~~~q~d~~~~~~~~~~i-~s~s~~~~~~~l~CE~--t~~lv~elr~~~~~~l~~ 410 (518)
+.|.|++++|++.... ...+.||+++....+ ....+.+..- +.++.|++.+.|.|.. ...+.|++..+.+.
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~-~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~---- 76 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDP-KEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRF---- 76 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc-cceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCc----
Confidence 4577899999875532 347899999976443 1111111111 2377999999999985 67888888776652
Q ss_pred CCCcccceeEEeecccccCC
Q 010105 411 TGASKTMGTASLSLQNFISP 430 (518)
Q Consensus 411 ~~~sk~lG~~s~~w~dll~~ 430 (518)
.+..++|.+++++.++...
T Consensus 77 -~~~~~~G~~~~~l~~~~~~ 95 (101)
T smart00239 77 -GRDDFIGQVTIPLSDLLLG 95 (101)
T ss_pred -cCCceeEEEEEEHHHcccC
Confidence 3678899999999998864
No 76
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=95.31 E-value=0.12 Score=47.84 Aligned_cols=100 Identities=17% Similarity=0.305 Sum_probs=65.1
Q ss_pred EEEEEEeecCCCCCc---CCCCceEEEEeccCCCcccccccceee---eeccccceeEEEEeec----cccEEEEEEecC
Q 010105 335 VFVEIVAVKNLPEDH---KDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA----TGELLFELVSHS 404 (518)
Q Consensus 335 v~l~iv~~~nl~~~~---~~~~~lfVr~~~~q~d~~~~~~~~~~i---~s~s~~~~~~~l~CE~----t~~lv~elr~~~ 404 (518)
+.|.|+.++||+... ..+.+-||.++....++... +++..+ +.++-|++.+.|.=.. ...|.|+|..+.
T Consensus 17 L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~-kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d 95 (138)
T cd08407 17 LLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLK-KKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQD 95 (138)
T ss_pred EEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccc-eeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCC
Confidence 667789999997442 12368899999764333332 222223 4557899999997432 356888888875
Q ss_pred CCCccCCCCcccceeEEeec----------ccccCCCCCceEEEEEe
Q 010105 405 TSKIPMTGASKTMGTASLSL----------QNFISPISKLAVEQWFD 441 (518)
Q Consensus 405 ~~~l~~~~~sk~lG~~s~~w----------~dll~~~~~Ls~E~w~~ 441 (518)
. +++...||.++|+. .++++. |.-.+++|=.
T Consensus 96 ~-----~~~~d~iG~v~lg~~~~g~~~~hW~~ml~~-p~~~va~WH~ 136 (138)
T cd08407 96 S-----PGQSLPLGRCSLGLHTSGTERQHWEEMLDN-PRRQIAMWHQ 136 (138)
T ss_pred C-----CcCcceeceEEecCcCCCcHHHHHHHHHhC-CCCchhEEEE
Confidence 4 56788999999995 455543 4555555533
No 77
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=95.16 E-value=0.41 Score=43.24 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=71.5
Q ss_pred EEEEEEEeecCCCCC-cCCCCceEEEEeccCCCcccccccceee--eeccccceeEEEE-ee-cc---------ccEEEE
Q 010105 334 EVFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQ-CE-AT---------GELLFE 399 (518)
Q Consensus 334 ev~l~iv~~~nl~~~-~~~~~~lfVr~~~~q~d~~~~~~~~~~i--~s~s~~~~~~~l~-CE-~t---------~~lv~e 399 (518)
++.|.|++++|++.. .....+-||.++.. +... ++..+ +.++.|++.+.|. +. ++ ..+.||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~--~~~~---kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~ 76 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFL--NQSQ---ETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVE 76 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEEC--Ceee---EeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEE
Confidence 577889999999753 22345778888753 1111 11222 3456899999886 33 11 257888
Q ss_pred EEecCCCCccCCCCcccceeEEe-ecccccCCCCCceEEEEEeeccCCCCCCCCCceEEEEEee
Q 010105 400 LVSHSTSKIPMTGASKTMGTASL-SLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSF 462 (518)
Q Consensus 400 lr~~~~~~l~~~~~sk~lG~~s~-~w~dll~~~~~Ls~E~w~~l~~~~~~~~~~p~~lrva~S~ 462 (518)
+.-+.. +++...||++.+ +...+..+.+.-...+|++|..++...| .|-+++++
T Consensus 77 V~d~d~-----~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~G----eil~~~~~ 131 (135)
T cd04017 77 LFDQDS-----VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAG----ELLAAFEL 131 (135)
T ss_pred EEeCcC-----CCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchh----heeEEeEE
Confidence 886654 356789999997 4434433334567889999976544322 45555543
No 78
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=95.13 E-value=0.47 Score=42.27 Aligned_cols=101 Identities=15% Similarity=0.235 Sum_probs=66.2
Q ss_pred EEEEEEeecCCCCC-c-CCCCceEEEEeccCCCcccccccceeeeeccccceeEEEEee-ccccEEEEEEecCCCCccCC
Q 010105 335 VFVEIVAVKNLPED-H-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMT 411 (518)
Q Consensus 335 v~l~iv~~~nl~~~-~-~~~~~lfVr~~~~q~d~~~~~~~~~~i~s~s~~~~~~~l~CE-~t~~lv~elr~~~~~~l~~~ 411 (518)
+.|.|++++||+.. . ....+-||.++.. .....+. +...=+.++-|++.+.|.+- +...+.|++..+.. +
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~-~~~~~kT-~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~-----~ 74 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD-QEEVFRT-KTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDV-----L 74 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEEC-CccEEEe-eEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCC-----C
Confidence 45678999999864 1 1124668888653 1111110 01111457799999999986 34567777644432 4
Q ss_pred CCcccceeEEeecccccCCCCCceEEEEEeeccC
Q 010105 412 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (518)
Q Consensus 412 ~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~ 445 (518)
++...||.++|+.+++... -..+.|++|.|.
T Consensus 75 ~~~~~iG~~~i~l~~l~~~---~~~~~w~~L~~~ 105 (121)
T cd08401 75 RRDSVIGKVAIKKEDLHKY---YGKDTWFPLQPV 105 (121)
T ss_pred CCCceEEEEEEEHHHccCC---CCcEeeEEEEcc
Confidence 5667899999999999863 247999999875
No 79
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=95.11 E-value=0.28 Score=46.38 Aligned_cols=101 Identities=19% Similarity=0.234 Sum_probs=67.3
Q ss_pred EEEEEEeecC--CCCCc-CCCCceEEEEeccCC-Ccccccccceee---eeccccceeEEEEee----------ccccEE
Q 010105 335 VFVEIVAVKN--LPEDH-KDKGDLFVFFSKSQP-DIFFNAKQKLTI---LSKSGMKQVASFQCE----------ATGELL 397 (518)
Q Consensus 335 v~l~iv~~~n--l~~~~-~~~~~lfVr~~~~q~-d~~~~~~~~~~i---~s~s~~~~~~~l~CE----------~t~~lv 397 (518)
..|.|+.++| +|.+- ....+-||.|+..-| +..-.. +..+ +.++-|++.+.|.=. ..+.|.
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~--KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~ 81 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSG--KTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLK 81 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCcee--ecCcccCCCCCcccceEEEEeccccchhhhhccCCcEE
Confidence 4566777777 55543 223689999986433 322211 2222 556789998887643 245799
Q ss_pred EEEEecCCCCccCCCCcccceeEEeecccccCCCCCceEEEEEeecc
Q 010105 398 FELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 444 (518)
Q Consensus 398 ~elr~~~~~~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~ 444 (518)
||+..+.. + +++.++||++.+.+++|.... .++.|++|..
T Consensus 82 ~~V~d~~~-f---~~~D~~iG~~~i~L~~l~~~~---~~~~~~~L~~ 121 (155)
T cd08690 82 FEVYHKGG-F---LRSDKLLGTAQVKLEPLETKC---EIHESVDLMD 121 (155)
T ss_pred EEEEeCCC-c---ccCCCeeEEEEEEcccccccC---cceEEEEhhh
Confidence 99876654 3 478899999999999997642 4667999874
No 80
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=95.03 E-value=0.16 Score=43.75 Aligned_cols=94 Identities=17% Similarity=0.192 Sum_probs=60.9
Q ss_pred EEEEeecCCCCCc-CCCCceEEEEeccCCC-cccccccceee--eeccccceeEEEEeec------cccEEEEEEecCCC
Q 010105 337 VEIVAVKNLPEDH-KDKGDLFVFFSKSQPD-IFFNAKQKLTI--LSKSGMKQVASFQCEA------TGELLFELVSHSTS 406 (518)
Q Consensus 337 l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d-~~~~~~~~~~i--~s~s~~~~~~~l~CE~------t~~lv~elr~~~~~ 406 (518)
+.+++++||+... ....+-||+++....+ ......++-.+ +.++.|+ .+.|.++. ...|.||+..+..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~- 81 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS- 81 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC-
Confidence 3467889987442 1235779999865433 11111112222 4567889 68887752 5689999988754
Q ss_pred CccCCCCcccceeEEeecccccCCCCCceEE
Q 010105 407 KIPMTGASKTMGTASLSLQNFISPISKLAVE 437 (518)
Q Consensus 407 ~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E 437 (518)
+++...||.+.+++++|+.. ...+.|
T Consensus 82 ----~~~d~~iG~~~~~l~~l~~~-~~~~~~ 107 (110)
T cd04047 82 ----SGKHDLIGEFETTLDELLKS-SPLEFE 107 (110)
T ss_pred ----CCCCcEEEEEEEEHHHHhcC-CCceEE
Confidence 46778999999999999953 344443
No 81
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=95.00 E-value=0.34 Score=44.63 Aligned_cols=108 Identities=14% Similarity=0.060 Sum_probs=70.6
Q ss_pred EEEEEeecCCCCCcCCCCceEEEEeccCCCccc--------ccccceee--eecccc-ceeEEEEeeccccEEEEEEecC
Q 010105 336 FVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFF--------NAKQKLTI--LSKSGM-KQVASFQCEATGELLFELVSHS 404 (518)
Q Consensus 336 ~l~iv~~~nl~~~~~~~~~lfVr~~~~q~d~~~--------~~~~~~~i--~s~s~~-~~~~~l~CE~t~~lv~elr~~~ 404 (518)
-|.+++++||+...-.+.+=||.++....+..+ +..++-.+ +.++.| ++.+.|.+.....|.+|+.-+.
T Consensus 4 ~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~~~L~v~V~D~~ 83 (137)
T cd08691 4 SLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPTDVLEIEVKDKF 83 (137)
T ss_pred EEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCCCEEEEEEEecC
Confidence 356789999973322335678888765322210 11112222 346799 9999999988888999997643
Q ss_pred CCCccCCCCcccceeEEeecccccCCCCCceEEEEEeeccC
Q 010105 405 TSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (518)
Q Consensus 405 ~~~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~ 445 (518)
+.- .......||.+.|++.++++..-+-..+.|+.|...
T Consensus 84 ~~~--~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~ 122 (137)
T cd08691 84 AKS--RPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR 122 (137)
T ss_pred CCC--CccCCceEEEEEEEHHHhcccccCCceEEEEECCcC
Confidence 310 011248999999999999986434468889988754
No 82
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=94.99 E-value=0.7 Score=41.28 Aligned_cols=103 Identities=12% Similarity=0.264 Sum_probs=68.7
Q ss_pred EEEEEEEeecCCCCCc-CCCCceEEEEeccCCCcccccccceee--eeccccceeEEEEee-ccccEEEEEEecCCCCcc
Q 010105 334 EVFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-ATGELLFELVSHSTSKIP 409 (518)
Q Consensus 334 ev~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~~~i--~s~s~~~~~~~l~CE-~t~~lv~elr~~~~~~l~ 409 (518)
.+.|.|++++||+... ....+-||+++.. +... ++..+ +.++.|++.+.|.|. +...+.|++..+......
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~--~~~~---kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~ 76 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG--KTKK---RTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKS 76 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEEC--CEee---ecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccc
Confidence 3678899999998542 2235679998853 1111 11122 456799999999996 566788888665432110
Q ss_pred ------CCCCcccceeEEeecccccCCCCCceEEEEEeeccCC
Q 010105 410 ------MTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRS 446 (518)
Q Consensus 410 ------~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~ 446 (518)
...+-..||.+.|++.++-.. .+.|++|.+++
T Consensus 77 ~~~~~~~~~~~~~iG~~~i~l~~~~~~-----~~~w~~L~~~~ 114 (127)
T cd04027 77 RLKQKFTRESDDFLGQTIIEVRTLSGE-----MDVWYNLEKRT 114 (127)
T ss_pred ccceeccccCCCcceEEEEEhHHccCC-----CCeEEECccCC
Confidence 013577899999999987532 36899998875
No 83
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=94.96 E-value=0.7 Score=41.23 Aligned_cols=116 Identities=12% Similarity=0.108 Sum_probs=72.9
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCcccccccceeeeeccccceeEEEEee-ccccEEEEEEecCCCCccCCC
Q 010105 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTG 412 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~~~i~s~s~~~~~~~l~CE-~t~~lv~elr~~~~~~l~~~~ 412 (518)
+.|.|++++|++... ....+-||.++.. +.. .. .+...-+.++.|++.+.|+.. +...+.|||.-+.. ++
T Consensus 5 ~~V~v~~A~~L~~~d~~g~~dPyv~v~~~-~~~-~k-T~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~-----~~ 76 (126)
T cd04046 5 TQVHVHSAEGLSKQDSGGGADPYVIIKCE-GES-VR-SPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNL-----LC 76 (126)
T ss_pred EEEEEEeCcCCCCCCCCCCcCccEEEEEC-CEE-EE-eCccCCCCCCcccceEEEEecCCCCEEEEEEEECCC-----CC
Confidence 667789999997532 1235678988743 211 11 011111456799999999876 66789999987643 22
Q ss_pred CcccceeEEeecccccCCCCCceEEEEEeeccCCCCCCCCCc-eEEEEEeecC
Q 010105 413 ASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPI-SLRIAVSFTI 464 (518)
Q Consensus 413 ~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~~~~~p~-~lrva~S~Tp 464 (518)
...||.++++++++.. ...+|+.|...+...+.+.. .|+|-+++++
T Consensus 77 -d~~lG~~~~~l~~~~~-----~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 77 -DEFLGQATLSADPNDS-----QTLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred -CCceEEEEEecccCCC-----cCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 5899999999987542 23477888644333333332 6666666543
No 84
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=94.90 E-value=0.2 Score=39.95 Aligned_cols=79 Identities=23% Similarity=0.307 Sum_probs=54.6
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCCCcccccccceee---eeccccceeEEEEee--ccccEEEEEEecCCCCc
Q 010105 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCE--ATGELLFELVSHSTSKI 408 (518)
Q Consensus 335 v~l~iv~~~nl~~~-~~~~~~lfVr~~~~q~d~~~~~~~~~~i---~s~s~~~~~~~l~CE--~t~~lv~elr~~~~~~l 408 (518)
+.|.|++++||+.. .....+.||+++-..... . ..+..+ +..+.|++.+.|.|. ....|.|+|.....
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~-~--~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~--- 74 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES-T--KYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDS--- 74 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC-E--EEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETS---
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeee-e--eeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCC---
Confidence 35678999999873 234578999999664332 0 111222 345689999999966 45679999997766
Q ss_pred cCCCCcccceeEE
Q 010105 409 PMTGASKTMGTAS 421 (518)
Q Consensus 409 ~~~~~sk~lG~~s 421 (518)
+++.++||.+.
T Consensus 75 --~~~~~~iG~~~ 85 (85)
T PF00168_consen 75 --FGKDELIGEVK 85 (85)
T ss_dssp --SSSEEEEEEEE
T ss_pred --CCCCCEEEEEC
Confidence 55688999863
No 85
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=94.88 E-value=0.16 Score=45.90 Aligned_cols=100 Identities=16% Similarity=0.260 Sum_probs=64.9
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCCCc-ccccccceee---eeccccceeEEEEeec----cccEEEEEEecCC
Q 010105 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDI-FFNAKQKLTI---LSKSGMKQVASFQCEA----TGELLFELVSHST 405 (518)
Q Consensus 335 v~l~iv~~~nl~~~-~~~~~~lfVr~~~~q~d~-~~~~~~~~~i---~s~s~~~~~~~l~CE~----t~~lv~elr~~~~ 405 (518)
+.|.|++++||+.. .+...+-||+.+.+ ||. ...-+.+..+ +.++.|++.+.|.=.. ...|.|.+..+..
T Consensus 16 L~V~V~~arnL~~~~~~~~~dpyVKv~Ll-p~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~ 94 (124)
T cd08680 16 LVISVEQLRNLSALSIPENSKVYVRVALL-PCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGP 94 (124)
T ss_pred EEEEEeEecCCcccccCCCCCeEEEEEEc-cCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCC
Confidence 67788999999753 22346899999965 442 1111122223 4567899988887432 3466666665532
Q ss_pred CCccCCCCcccceeEEeecccccCCCCCceEEEEEee
Q 010105 406 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 442 (518)
Q Consensus 406 ~~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l 442 (518)
++....||.+.|++.++-.... ...+|++|
T Consensus 95 -----~~~~~~lG~~~i~L~~~~~~~~--~~~~Wy~l 124 (124)
T cd08680 95 -----DQQEECLGGAQISLADFESSEE--MSTKWYNL 124 (124)
T ss_pred -----CCceeEEEEEEEEhhhccCCCc--cccccccC
Confidence 5778899999999999933222 35778764
No 86
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=94.63 E-value=0.21 Score=45.33 Aligned_cols=84 Identities=17% Similarity=0.244 Sum_probs=52.9
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCcccccccceee--eeccccceeEEEEeec--cc--cEEEEEEecCCCC
Q 010105 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCEA--TG--ELLFELVSHSTSK 407 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~~~i--~s~s~~~~~~~l~CE~--t~--~lv~elr~~~~~~ 407 (518)
+.|.|+.++||+... ....+-||.++...+.+.+..+++..+ +.++-|++.+.|.-.. .. -+.|++..+..
T Consensus 16 L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~-- 93 (135)
T cd08410 16 LNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNV-- 93 (135)
T ss_pred EEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCC--
Confidence 677889999997532 224678999886433222221111112 3467999999998742 22 47788887644
Q ss_pred ccCCCCcccceeEEee
Q 010105 408 IPMTGASKTMGTASLS 423 (518)
Q Consensus 408 l~~~~~sk~lG~~s~~ 423 (518)
.++..+||.+.|+
T Consensus 94 ---~~~~~~iG~~~l~ 106 (135)
T cd08410 94 ---KSSNDFIGRIVIG 106 (135)
T ss_pred ---CCCCcEEEEEEEc
Confidence 4577788887755
No 87
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=94.60 E-value=0.25 Score=45.94 Aligned_cols=91 Identities=16% Similarity=0.228 Sum_probs=63.7
Q ss_pred EEEEEEeecCCCCCcCCCCceEEEEeccCCCcccccccceeeeeccccceeEEEEee-ccccEEEEEEecCCCCccCCCC
Q 010105 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTGA 413 (518)
Q Consensus 335 v~l~iv~~~nl~~~~~~~~~lfVr~~~~q~d~~~~~~~~~~i~s~s~~~~~~~l~CE-~t~~lv~elr~~~~~~l~~~~~ 413 (518)
+.|.|++++|++.......+-||+++... ...+ .+...=+.++-|++.+.|... +...+.||+.-+.. +.+
T Consensus 4 L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~--~~~k-T~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~-----~~~ 75 (145)
T cd04038 4 LKVRVVRGTNLAVRDFTSSDPYVVLTLGN--QKVK-TRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDT-----FSK 75 (145)
T ss_pred EEEEEEeeECCCCCCCCCcCcEEEEEECC--EEEE-eeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCC-----CCC
Confidence 66778999999744323467799888532 1111 011112456899999999987 67789999987664 455
Q ss_pred cccceeEEeecccccCCCCCc
Q 010105 414 SKTMGTASLSLQNFISPISKL 434 (518)
Q Consensus 414 sk~lG~~s~~w~dll~~~~~L 434 (518)
...||.+.|++++|+.. .++
T Consensus 76 dd~iG~a~i~l~~l~~~-~~~ 95 (145)
T cd04038 76 DDSMGEAEIDLEPLVEA-AKL 95 (145)
T ss_pred CCEEEEEEEEHHHhhhh-hhh
Confidence 67899999999999976 354
No 88
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=94.59 E-value=0.25 Score=44.54 Aligned_cols=91 Identities=21% Similarity=0.204 Sum_probs=61.1
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCccc-ccccceee---eeccccceeEEEEeec------cccEEEEEEec
Q 010105 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFF-NAKQKLTI---LSKSGMKQVASFQCEA------TGELLFELVSH 403 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~-~~~~~~~i---~s~s~~~~~~~l~CE~------t~~lv~elr~~ 403 (518)
+.|.|++++||+... ....+-||+++....+++- ....+..+ +.++.|++.+.|.+.. ...+.|++.-+
T Consensus 18 L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~ 97 (133)
T cd04009 18 LRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDY 97 (133)
T ss_pred EEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEec
Confidence 777889999998532 2346789999865332210 01122333 2456899999999863 23677777765
Q ss_pred CCCCccCCCCcccceeEEeecccccCC
Q 010105 404 STSKIPMTGASKTMGTASLSLQNFISP 430 (518)
Q Consensus 404 ~~~~l~~~~~sk~lG~~s~~w~dll~~ 430 (518)
.. +++..+||.++|+++++...
T Consensus 98 d~-----~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 98 DL-----LGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred CC-----CCCCcEeEEEEEeHHHCCcc
Confidence 43 46678999999999999854
No 89
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=94.31 E-value=0.3 Score=45.95 Aligned_cols=97 Identities=16% Similarity=0.309 Sum_probs=63.8
Q ss_pred EEEEEEEEEeecCCCCCc-CCCCceEEEEeccCCCcc------c------------------ccccceee---eeccccc
Q 010105 332 IVEVFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIF------F------------------NAKQKLTI---LSKSGMK 383 (518)
Q Consensus 332 ~~ev~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~------~------------------~~~~~~~i---~s~s~~~ 383 (518)
+..+.|.|++++||+... ....+=||+++....... . ... +..+ +.++.|+
T Consensus 27 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-kT~v~~~tlnP~Wn 105 (153)
T cd08676 27 IFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIK-VTEVKPQTLNPVWN 105 (153)
T ss_pred eEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccE-ecceecCCCCCccc
Confidence 344666679999987432 123566888874321100 0 001 1222 3467999
Q ss_pred eeEEEEeec--cccEEEEEEecCCCCccCCCCcccceeEEeecccccCCCCCceEEEEEee
Q 010105 384 QVASFQCEA--TGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 442 (518)
Q Consensus 384 ~~~~l~CE~--t~~lv~elr~~~~~~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l 442 (518)
+.+.|.+.. +..|.|++.-+. ..+||.++|+.+++.. .. ++.|++|
T Consensus 106 E~F~f~v~~~~~~~L~i~V~D~d---------d~~IG~v~i~l~~l~~--~~--~d~W~~L 153 (153)
T cd08676 106 ETFRFEVEDVSNDQLHLDIWDHD---------DDFLGCVNIPLKDLPS--CG--LDSWFKL 153 (153)
T ss_pred cEEEEEeccCCCCEEEEEEEecC---------CCeEEEEEEEHHHhCC--CC--CCCeEeC
Confidence 999999973 567888887654 5679999999999983 23 5999986
No 90
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=94.15 E-value=0.41 Score=43.57 Aligned_cols=92 Identities=15% Similarity=0.088 Sum_probs=63.0
Q ss_pred ceEEEEEEEEEeecCCCCCcCCCCceEEEEeccCCCcccccccceeeeeccccceeEEEEe-e--ccccEEEEEEecCCC
Q 010105 330 LKIVEVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQC-E--ATGELLFELVSHSTS 406 (518)
Q Consensus 330 ~~~~ev~l~iv~~~nl~~~~~~~~~lfVr~~~~q~d~~~~~~~~~~i~s~s~~~~~~~l~C-E--~t~~lv~elr~~~~~ 406 (518)
+-+-.+.|.|++++||+.+.....+-||+++... ...+. +.+.-+.++.|++.+.|.. + ....|.|||.-+..
T Consensus 25 ~~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~--~~~kT-~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~- 100 (127)
T cd04032 25 RGLATLTVTVLRATGLWGDYFTSTDGYVKVFFGG--QEKRT-EVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN- 100 (127)
T ss_pred CCcEEEEEEEEECCCCCcCcCCCCCeEEEEEECC--ccccC-ceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC-
Confidence 4455688999999999854333457899998542 11110 1111134679999999974 3 35688888887665
Q ss_pred CccCCCCcccceeEEeecccccC
Q 010105 407 KIPMTGASKTMGTASLSLQNFIS 429 (518)
Q Consensus 407 ~l~~~~~sk~lG~~s~~w~dll~ 429 (518)
+++..+||+++|++....+
T Consensus 101 ----~s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 101 ----GWDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred ----CCCCCeeEEEEEEecCCce
Confidence 4577899999999986664
No 91
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=94.02 E-value=0.15 Score=44.47 Aligned_cols=73 Identities=16% Similarity=0.302 Sum_probs=54.7
Q ss_pred eccccceeEEEEeec--cccEEEEEEecCCCCccCCCCcccceeEEeecccccCCCCCceEEEEEeeccCCCCCCCCCce
Q 010105 378 SKSGMKQVASFQCEA--TGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPIS 455 (518)
Q Consensus 378 s~s~~~~~~~l~CE~--t~~lv~elr~~~~~~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~~~~~p~~ 455 (518)
.++-|++.+.|.|.. ...|.|++..+.. + +...||.+.|++.+++.. .-..+.||.|.. .+.-.
T Consensus 36 ~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~-----~-~d~~iG~~~v~L~~l~~~--~~~~~~w~~L~~------~~~G~ 101 (111)
T cd04052 36 NNPSWNASTEFLVTDRRKSRVTVVVKDDRD-----R-HDPVLGSVSISLNDLIDA--TSVGQQWFPLSG------NGQGR 101 (111)
T ss_pred CCCccCCceEEEecCcCCCEEEEEEEECCC-----C-CCCeEEEEEecHHHHHhh--hhccceeEECCC------CCCCE
Confidence 467899999999973 3458888766543 4 678899999999999874 223789999974 23356
Q ss_pred EEEEEeecC
Q 010105 456 LRIAVSFTI 464 (518)
Q Consensus 456 lrva~S~Tp 464 (518)
|++.+.++|
T Consensus 102 i~~~~~~~p 110 (111)
T cd04052 102 IRISALWKP 110 (111)
T ss_pred EEEEEEEec
Confidence 788888776
No 92
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=93.90 E-value=0.36 Score=42.35 Aligned_cols=88 Identities=20% Similarity=0.291 Sum_probs=58.0
Q ss_pred EEEEEEeecCCCCCcC-----CCCceEEEEeccCCCcccccccceeeeeccccceeEEEE-eeccc--cEEEEEEecCCC
Q 010105 335 VFVEIVAVKNLPEDHK-----DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQ-CEATG--ELLFELVSHSTS 406 (518)
Q Consensus 335 v~l~iv~~~nl~~~~~-----~~~~lfVr~~~~q~d~~~~~~~~~~i~s~s~~~~~~~l~-CE~t~--~lv~elr~~~~~ 406 (518)
+.|.|++++||+.... ...+=||.++.. ....+ .+...-+.++-|++.+.|. |++.. .|.|++..+..
T Consensus 3 l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~--~~~~k-T~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~- 78 (108)
T cd04039 3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG--RRVFR-TSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK- 78 (108)
T ss_pred EEEEEEeeeCCCCccccCCCCCccCceEEEEEC--CEeEe-eeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC-
Confidence 5678899999985321 113568988853 22221 1111123467899988886 44433 57788877654
Q ss_pred CccCCCCcccceeEEeecccccCC
Q 010105 407 KIPMTGASKTMGTASLSLQNFISP 430 (518)
Q Consensus 407 ~l~~~~~sk~lG~~s~~w~dll~~ 430 (518)
++....||+++|++++|+..
T Consensus 79 ----~~~dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 79 ----FSFNDYVATGSLSVQELLNA 98 (108)
T ss_pred ----CCCCcceEEEEEEHHHHHhh
Confidence 45678999999999999874
No 93
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=93.22 E-value=0.68 Score=41.94 Aligned_cols=97 Identities=20% Similarity=0.266 Sum_probs=66.9
Q ss_pred EEEEEEEeecCCCCCcCCCCceEEEEeccCCCcccccccceee---eeccccceeEEEEeec----cccEEEEEEecCCC
Q 010105 334 EVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA----TGELLFELVSHSTS 406 (518)
Q Consensus 334 ev~l~iv~~~nl~~~~~~~~~lfVr~~~~q~d~~~~~~~~~~i---~s~s~~~~~~~l~CE~----t~~lv~elr~~~~~ 406 (518)
++.|.|++|+|++... +.+=||..+...+++.- +.+..+ +.++.|++.+.|.=.. ...|.|.|.-+-.
T Consensus 15 ~L~V~vikA~~L~~~g--~sDPYVKv~L~~~~k~~--k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Dr- 89 (118)
T cd08677 15 ELHVNILEAENISVDA--GCECYISGCVSVSEGQK--EAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDR- 89 (118)
T ss_pred EEEEEEEEecCCCCCC--CCCeEEEEEEcCCcCcc--EEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCC-
Confidence 4778889999998443 36889999976544422 223334 4567999988886332 4467777776554
Q ss_pred CccCCCCcccceeEEeecccccCCCCCceEEEEEee
Q 010105 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 442 (518)
Q Consensus 407 ~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l 442 (518)
+++..+||.+.++++++-. ....|-|-+|
T Consensus 90 ----fs~~d~IG~v~l~l~~~~~---~~~~~~W~~~ 118 (118)
T cd08677 90 ----FSRHSTLGELRLKLADVSM---MLGAAQWVDL 118 (118)
T ss_pred ----CCCCceEEEEEEccccccC---CccccchhcC
Confidence 6778899999999998732 3356677664
No 94
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=92.92 E-value=0.8 Score=40.87 Aligned_cols=87 Identities=15% Similarity=0.219 Sum_probs=59.2
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCcccccccceee--eeccccceeEEEEee-c-cccEEEEEEecCCCCcc
Q 010105 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-A-TGELLFELVSHSTSKIP 409 (518)
Q Consensus 335 v~l~iv~~~nl~~~~-~~~~~lfVr~~~~q~d~~~~~~~~~~i--~s~s~~~~~~~l~CE-~-t~~lv~elr~~~~~~l~ 409 (518)
|.|.|++++|++... ....+-||+++.... + ...+ +..+ +.++-|++.+.|.|. + ...+.|++.-+..
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~-~-~~~k-T~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~---- 74 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKK-K-INDR-DNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDL---- 74 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCe-e-ccce-eeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCC----
Confidence 567789999997432 234577999986422 1 1111 1112 356799999999997 3 4568888887654
Q ss_pred CCCCcccceeEEeecccccC
Q 010105 410 MTGASKTMGTASLSLQNFIS 429 (518)
Q Consensus 410 ~~~~sk~lG~~s~~w~dll~ 429 (518)
+.+...||++.|++.+...
T Consensus 75 -~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 75 -LGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred -CCCCceeEEEEEeeccccc
Confidence 4566899999999987764
No 95
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=92.90 E-value=0.58 Score=43.34 Aligned_cols=101 Identities=21% Similarity=0.276 Sum_probs=63.2
Q ss_pred EEEEEEeecCCCCCcC-CCCceEEEEeccCCCcccccccceeee----eccccceeEEEEeec-c--ccEEEEEEecCCC
Q 010105 335 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTIL----SKSGMKQVASFQCEA-T--GELLFELVSHSTS 406 (518)
Q Consensus 335 v~l~iv~~~nl~~~~~-~~~~lfVr~~~~q~d~~~~~~~~~~i~----s~s~~~~~~~l~CE~-t--~~lv~elr~~~~~ 406 (518)
+-|.|+.++||+.... ...+-||..+....++.+. +++..+- ..+.|++.+.|.... - -.|++++.-+.+
T Consensus 16 LtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~-KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~- 93 (135)
T cd08692 16 IQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLY-KKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSS- 93 (135)
T ss_pred EEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcce-eecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCC-
Confidence 5677899999986432 1224699998765454443 2233332 235699999999873 2 255555554432
Q ss_pred CccCCCCcccceeEEeecccccCCCCCceEEEEEeeccC
Q 010105 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (518)
Q Consensus 407 ~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~ 445 (518)
.+++..||.++|..+... .-..|-|-+|..+
T Consensus 94 ----~~~n~~IG~v~lG~~~~~----~~~~~hW~~m~~~ 124 (135)
T cd08692 94 ----VRRKHFLGQVWISSDSSS----SEAVEQWKDTIAN 124 (135)
T ss_pred ----CcCCceEEEEEECCccCC----chhhhhHHHHHhC
Confidence 467889999999886532 1235777777554
No 96
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=90.66 E-value=4.2 Score=35.67 Aligned_cols=104 Identities=14% Similarity=0.176 Sum_probs=66.7
Q ss_pred EEeecCCCCCc-CCCCceEEEEeccCCC--cccccccceee---eeccccceeEEEEee--ccccEEEEEEecCCCCccC
Q 010105 339 IVAVKNLPEDH-KDKGDLFVFFSKSQPD--IFFNAKQKLTI---LSKSGMKQVASFQCE--ATGELLFELVSHSTSKIPM 410 (518)
Q Consensus 339 iv~~~nl~~~~-~~~~~lfVr~~~~q~d--~~~~~~~~~~i---~s~s~~~~~~~l~CE--~t~~lv~elr~~~~~~l~~ 410 (518)
.+.++||+... ..+.+-||+++..... .... ..+..+ +.++.|++.+.|... ....+.||+.-+...- ..
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~-~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~-~~ 83 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVE-IGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKS-KD 83 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEE-eccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCc-CC
Confidence 56788887432 2235679999966443 1111 122333 456789998888643 4567999998876520 01
Q ss_pred CCCcccceeEEeecccccCCCCCceEEEEEeeccCCC
Q 010105 411 TGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSG 447 (518)
Q Consensus 411 ~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~ 447 (518)
+++..+||.+.++.++|+.. . ....|++|++.++
T Consensus 84 ~~~~d~iG~~~i~l~~l~~~-~--~~~~~~~l~~~~~ 117 (120)
T cd04048 84 LSDHDFLGEAECTLGEIVSS-P--GQKLTLPLKGGKG 117 (120)
T ss_pred CCCCcEEEEEEEEHHHHhcC-C--CcEEEEEccCCCc
Confidence 45678899999999999964 2 3456888866544
No 97
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=90.06 E-value=2.6 Score=39.58 Aligned_cols=88 Identities=13% Similarity=0.131 Sum_probs=59.5
Q ss_pred EEEEEEeecCCCCCcC---------------CCCceEEEEeccCCCcccccccceeeeeccccceeEEEEee---ccccE
Q 010105 335 VFVEIVAVKNLPEDHK---------------DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE---ATGEL 396 (518)
Q Consensus 335 v~l~iv~~~nl~~~~~---------------~~~~lfVr~~~~q~d~~~~~~~~~~i~s~s~~~~~~~l~CE---~t~~l 396 (518)
++|.|.++++||.... ...+-||++.-. + ...+ .+...=+.++.|++.+.|..- ....+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~-g-~~~k-T~v~~~t~nPvWNE~f~f~v~~p~~~~~l 78 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA-G-QKVK-TSVKKNSYNPEWNEQIVFPEMFPPLCERI 78 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC-C-Eeee-cceEcCCCCCCcceEEEEEeeCCCcCCEE
Confidence 4677899999985321 124668888732 2 1111 011122457799999999842 35688
Q ss_pred EEEEEecCCCCccCCCCcccceeEEeecccccCC
Q 010105 397 LFELVSHSTSKIPMTGASKTMGTASLSLQNFISP 430 (518)
Q Consensus 397 v~elr~~~~~~l~~~~~sk~lG~~s~~w~dll~~ 430 (518)
+|||..+.. ..+..+||+++|++.++...
T Consensus 79 ~~~v~D~d~-----~~~dd~iG~~~l~l~~l~~~ 107 (151)
T cd04018 79 KIQIRDWDR-----VGNDDVIGTHFIDLSKISNS 107 (151)
T ss_pred EEEEEECCC-----CCCCCEEEEEEEeHHHhccC
Confidence 999988765 35678899999999999875
No 98
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=89.38 E-value=7.7 Score=35.25 Aligned_cols=84 Identities=14% Similarity=0.176 Sum_probs=57.4
Q ss_pred EEEEEeecCCCCCcCCCCceEEEEeccC-CCcccccccceee--eeccccceeEEEEeeccccEEEEEEecCCCC--ccC
Q 010105 336 FVEIVAVKNLPEDHKDKGDLFVFFSKSQ-PDIFFNAKQKLTI--LSKSGMKQVASFQCEATGELLFELVSHSTSK--IPM 410 (518)
Q Consensus 336 ~l~iv~~~nl~~~~~~~~~lfVr~~~~q-~d~~~~~~~~~~i--~s~s~~~~~~~l~CE~t~~lv~elr~~~~~~--l~~ 410 (518)
.|.+++++||+.. .+-||-+.... ++..-..+ +-.+ +.++-|++.+.|+.+++..+.|.+.-....+ +..
T Consensus 2 ~V~V~~A~~L~~~----sDPYV~l~v~~~~~~~~~~K-Tk~i~~TlnPvWnE~F~i~l~~s~~L~~~v~d~~~~~~~~d~ 76 (118)
T cd08686 2 NVIVHSAQGFKQS----ANLYCTLEVDSFGYFVKKAK-TRVCRDTTEPNWNEEFEIELEGSQTLRILCYEKCYSKVKLDG 76 (118)
T ss_pred EEEEEeCCCCCCC----CCCEEEEEEcCccccceeee-eeeecCCCCCccceEEEEEeCCCCEEEEEEEEcccccccccc
Confidence 5678999999622 57899996442 22221222 2233 4677999999999998888988888764322 233
Q ss_pred CCCcccceeEEeec
Q 010105 411 TGASKTMGTASLSL 424 (518)
Q Consensus 411 ~~~sk~lG~~s~~w 424 (518)
.++-+++|++.|.+
T Consensus 77 ~~~d~~~G~g~i~L 90 (118)
T cd08686 77 EGTDAIMGKGQIQL 90 (118)
T ss_pred cCcccEEEEEEEEE
Confidence 56778998888776
No 99
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=88.50 E-value=2.4 Score=54.21 Aligned_cols=111 Identities=18% Similarity=0.249 Sum_probs=77.6
Q ss_pred EEEEEEeecCCCCCcCCCCceEEEEecc-CCCcccccccceeeeeccccceeEEEEee-cc-cc-EEEEEEecCCCCccC
Q 010105 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKS-QPDIFFNAKQKLTILSKSGMKQVASFQCE-AT-GE-LLFELVSHSTSKIPM 410 (518)
Q Consensus 335 v~l~iv~~~nl~~~~~~~~~lfVr~~~~-q~d~~~~~~~~~~i~s~s~~~~~~~l~CE-~t-~~-lv~elr~~~~~~l~~ 410 (518)
+-|.+++.+|++.+. +..+=||+++-. |+.+..+ .+.=+.+|-|++.+.|-++ |. +. +.||+..+..
T Consensus 1982 L~V~V~~a~nl~~~~-~~sdPyv~l~~g~~~~~kTk---vvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~----- 2052 (2102)
T PLN03200 1982 LTVTIKRGNNLKQSM-GNTNAFCKLTLGNGPPRQTK---VVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT----- 2052 (2102)
T ss_pred eEEEEeecccccccc-CCCCCeEEEEECCCCccccc---ccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc-----
Confidence 567789999998431 336789999955 4333221 2223557899999999999 54 44 8999988773
Q ss_pred CCCcccceeEEeecccccCCCCCceEEEEEeeccCCCC-CCCCCceEEE
Q 010105 411 TGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGN-VSSKPISLRI 458 (518)
Q Consensus 411 ~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~-~~~~p~~lrv 458 (518)
|++. .+|.++|+..++... =.+..||.|.+++.. +.++-+++.+
T Consensus 2053 f~kd-~~G~~~i~l~~vv~~---~~~~~~~~L~~~~~k~G~~~~~~~e~ 2097 (2102)
T PLN03200 2053 FGKS-SLGKVTIQIDRVVME---GTYSGEYSLNPESNKDGSSRTLEIEF 2097 (2102)
T ss_pred cCCC-CCceEEEEHHHHhcC---ceeeeeeecCcccccCCCcceEEEEE
Confidence 6555 799999999999964 478999999975332 3335555443
No 100
>PLN02352 phospholipase D epsilon
Probab=88.23 E-value=1.2 Score=51.69 Aligned_cols=105 Identities=12% Similarity=0.243 Sum_probs=78.2
Q ss_pred ceEEEEeccCCCcccccccceeeeeccccceeEEEEee-cc-ccEEEEEEecCCCCccCCCCcccceeEEeecccccCCC
Q 010105 354 DLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-AT-GELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPI 431 (518)
Q Consensus 354 ~lfVr~~~~q~d~~~~~~~~~~i~s~s~~~~~~~l~CE-~t-~~lv~elr~~~~~~l~~~~~sk~lG~~s~~w~dll~~~ 431 (518)
..||.....+. .+ .++ +-..++.|++.++.+|- .. ..|+|-+.- ++.+||++.|+=++++.-
T Consensus 37 ~~y~tv~~~~~--~v--~rt-~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~----------~~~~ig~~~~p~~~~~~g- 100 (758)
T PLN02352 37 ATYVTIKIGNK--KV--AKT-SHEYDRVWNQTFQILCAHPLDSTITITLKT----------KCSILGRFHIQAHQIVTE- 100 (758)
T ss_pred CceEEEEeCCc--EE--ecC-CCCCCCccccceeEEeeeecCCcEEEEEec----------CCeEEEEEEEEHHHhhCC-
Confidence 77877664421 11 222 22347789999999999 66 689998865 378899999999999974
Q ss_pred CCceEEEEEeeccCCCCCCCCCceEEEEEeecCCcchhhhhhhcc
Q 010105 432 SKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTIPTLAPHLLRMVR 476 (518)
Q Consensus 432 ~~Ls~E~w~~l~~~~~~~~~~p~~lrva~S~TppvqAp~~l~~v~ 476 (518)
.-.+|+||++...++.-- ++..||+.+.+||=.+-|+--+-|.
T Consensus 101 -~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~g~~ 143 (758)
T PLN02352 101 -ASFINGFFPLIMENGKPN-PELKLRFMLWFRPAELEPTWCKILE 143 (758)
T ss_pred -CcccceEEEcccCCCCCC-CCCEEEEEEEEEEhhhCcchhhccc
Confidence 233999999977665433 3479999999999999888766663
No 101
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.51 E-value=4.2 Score=44.34 Aligned_cols=103 Identities=19% Similarity=0.312 Sum_probs=68.1
Q ss_pred EEEEEEeecCCCCCcC-CCCceEEEEeccCCCcccccccceee---eeccccceeEEEEeecc--c--cEEEEEEecCCC
Q 010105 335 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEAT--G--ELLFELVSHSTS 406 (518)
Q Consensus 335 v~l~iv~~~nl~~~~~-~~~~lfVr~~~~q~d~~~~~~~~~~i---~s~s~~~~~~~l~CE~t--~--~lv~elr~~~~~ 406 (518)
+.|.|+.+|||+.... ...+-||..+....++.++ +.+..+ +.++.|+..+.|.+-+. . .++|++.-+..
T Consensus 300 ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~-kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~- 377 (421)
T KOG1028|consen 300 LTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLS-KKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDT- 377 (421)
T ss_pred EEEEEEEecCCCcccCCCCCCccEEEEEecCCceee-eeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEccc-
Confidence 6777899999984432 2234799999887775543 334444 33458899999977643 2 56777776665
Q ss_pred CccCCCCcccceeEEee----------cccccCCCCCceEEEEEeecc
Q 010105 407 KIPMTGASKTMGTASLS----------LQNFISPISKLAVEQWFDLVP 444 (518)
Q Consensus 407 ~l~~~~~sk~lG~~s~~----------w~dll~~~~~Ls~E~w~~l~~ 444 (518)
++....||...+. |++++.. |..-++.|-.|.+
T Consensus 378 ----~~~~~~iG~~~lG~~~~~~~~~hW~~m~~~-p~~pv~~wh~l~~ 420 (421)
T KOG1028|consen 378 ----LGSNDLIGRCILGSDSTGEEVRHWQEMLNS-PRKPVAQWHSLRS 420 (421)
T ss_pred ----ccccceeeEEEecCCCCchHHHHHHHHHhC-ccCceeeeEeccc
Confidence 3444467766554 6677775 6777777776643
No 102
>COG4278 Uncharacterized conserved protein [Function unknown]
Probab=83.03 E-value=4.5 Score=40.87 Aligned_cols=193 Identities=12% Similarity=0.042 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHhhHHHHhhccCCcCCCccccCCcchhHHHHHhccChhhHHHHHHHHhCCcCCCCCcCc--cccccchhh
Q 010105 51 ALQRAIYRYNACWLPLLAKHSESHISKGCLVVPLDCEWIWHCHRLNPVQYKSDCEELYGKNLDNSYVVS--SIQGTCRKE 128 (518)
Q Consensus 51 ~l~~Ai~RY~~~wl~lla~~~~~~~~~~~lvPPLDV~lvWH~H~LnP~~Y~~~C~~~~g~~id~~~~~~--~~~~~~~~~ 128 (518)
..++-+.-|.+| +-|.-..+ ..+..|-=-||.+||-|.|.-..|.+.|.+..|+.+.|+-... +.++.....
T Consensus 59 ~a~qve~e~R~F-~~L~iaag-----k~v~tpS~~VD~~WH~lIlhTReye~fcs~vlg~plhh~p~l~~~~~nq~~~~~ 132 (269)
T COG4278 59 LAEQVEKELRRF-VLLTIAAG-----KRVFTPSGVVDLYWHELILHTREYEKFCSSVLGIPLHHNPLLAKLLNNQDNSFG 132 (269)
T ss_pred HHHHHHHHHHHH-hhhhhhcC-----ccccChhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccChhhhcccCCCchhHH
Confidence 555666667774 32332222 2345577779999999999999999999999999998763222 222222233
Q ss_pred hHHHhhhhCCCCCccc------ccccccccc-----chhcccccccchhchHHHHHHhhhHH-HHHhccCCCCcHHHHHH
Q 010105 129 TEEIWNRLYPEEPYEL------DLAKISSED-----FSAELSGLEKFTKYDLVSAVKRQSPF-FYQVSRSHFNNDVFLEE 196 (518)
Q Consensus 129 ~~~~W~~~yP~epf~~------~~~~~~~~~-----i~~~~~~~~~~~~~DLv~aV~RQ~~F-~~~v~~P~~~d~~~L~r 196 (518)
-++.|......|--++ .+...+..+ +..+..-...-...|++.-|.-|.-- +..+ ...+.....+
T Consensus 133 lr~tlk~~~r~e~I~P~~~l~s~p~drl~r~Llf~rldakl~i~k~~~t~~~F~~vp~~c~~~~~~~---~r~d~~~av~ 209 (269)
T COG4278 133 LRRTLKPACRNEGILPKKALESLPDDRLPRVLLFARLDAKLAIEKGLHTIDEFKYVPEQCAPLIAHF---GRQDGNIAVR 209 (269)
T ss_pred HHHhcchhhhccccCchhhhhcCcccccccchhhhhhhhhhhhhcccchhhHHhhcccccccchhhc---cccCCceEEE
Confidence 3344544433221111 000000000 00000000000112333333222110 0000 0122233455
Q ss_pred HHHHHHHhHHhhhhcccccccccccCchhHHHHHhhcccChhhHHHHHHhHhCccccCC
Q 010105 197 AVARYKGFLHLIKKNRERSIKRFCVPTYDIDLIWHTHQLHPDSYCKDMSKTLGKVLEHD 255 (518)
Q Consensus 197 Ai~RYk~FL~L~~~~p~~~~~~~LVPTlDIDLvWHTHqL~p~~Y~~dc~~~~Gr~I~Hd 255 (518)
.+...++.+.....+.++ .+=.|.-+.|.--|--..+.-.|-.+|..-+|.+.+|.
T Consensus 210 c~a~f~~~~sgcgS~gg~---~~gs~~g~gd~~~H~~g~~~g~dgs~CgggcGg~gg~~ 265 (269)
T COG4278 210 CEAEFKKWMSGCGSYGGK---NFGSPSGVGDMYFHGCGGHTGGDGSFCGGGCGGFGGDP 265 (269)
T ss_pred ehhhhcCccccccccccC---CcCCCcccccccccccccCcCCCccccCCCCCCCCCCC
Confidence 566666666666555443 34567777777777777777777777776677776543
No 103
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.15 E-value=37 Score=37.14 Aligned_cols=105 Identities=18% Similarity=0.240 Sum_probs=71.8
Q ss_pred EEEEEEEEeecCCCCCcCC-CCceEEEEeccCCCcccccccceee---eeccccceeEEEEee----ccccEEEEEEecC
Q 010105 333 VEVFVEIVAVKNLPEDHKD-KGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCE----ATGELLFELVSHS 404 (518)
Q Consensus 333 ~ev~l~iv~~~nl~~~~~~-~~~lfVr~~~~q~d~~~~~~~~~~i---~s~s~~~~~~~l~CE----~t~~lv~elr~~~ 404 (518)
.++.|-|++++|+|...++ ..+=||+.+.+ ||+ +-+....+ +.++-|++.+.|+=. ++..|.|-+.-..
T Consensus 167 ~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~ll-Pdk--~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~d 243 (421)
T KOG1028|consen 167 NLLTVRVIQAHDLPAKDRGGTSDPYVKVYLL-PDK--KGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFD 243 (421)
T ss_pred CEEEEEEEEecCCCcccCCCCCCCeeEEEEc-CCC--CCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecC
Confidence 3467778999999976532 25789999966 665 22223333 334678998888822 3456666665443
Q ss_pred CCCccCCCCcccceeEEeecccccCCCCCceEEEEEeeccCCCC
Q 010105 405 TSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGN 448 (518)
Q Consensus 405 ~~~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~ 448 (518)
. |..-..||.+++++.++-... + ++.|.+|.+....
T Consensus 244 r-----fsr~~~iGev~~~l~~~~~~~-~--~~~w~~l~~~~~~ 279 (421)
T KOG1028|consen 244 R-----FSRHDFIGEVILPLGEVDLLS-T--TLFWKDLQPSSTD 279 (421)
T ss_pred C-----cccccEEEEEEecCccccccc-c--ceeeeccccccCC
Confidence 3 667778999999987776542 3 8899999987444
No 104
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=40.60 E-value=2.7e+02 Score=24.86 Aligned_cols=116 Identities=21% Similarity=0.319 Sum_probs=67.5
Q ss_pred EEEEEEEEeecCCCCCcCCCCceEEEEeccCCCcccc-cc-cceeee-eccccceeEEEEee-c---c------ccEEEE
Q 010105 333 VEVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFN-AK-QKLTIL-SKSGMKQVASFQCE-A---T------GELLFE 399 (518)
Q Consensus 333 ~ev~l~iv~~~nl~~~~~~~~~lfVr~~~~q~d~~~~-~~-~~~~i~-s~s~~~~~~~l~CE-~---t------~~lv~e 399 (518)
.++.|.|..+.|+|.. .+.+||....- +.... .. ....+. ..-.|++.+.+.|- . . +.+.|.
T Consensus 7 f~~~l~i~~l~~~p~~---~~~v~v~wkr~--~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 7 FQFDLTIHELENLPSS---NGKVFVKWKRG--DKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred EEEEEEEEEeECcCCC---CCEEEEEEEEC--CCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 5788999999999873 36999998632 22210 00 011111 12267887777776 1 1 256666
Q ss_pred EEecCCCCccCCCCcccceeEEeecccccCCCCCceEEEEEeeccCCCCCCCCCceEEEEEeec
Q 010105 400 LVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFT 463 (518)
Q Consensus 400 lr~~~~~~l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~~~~~p~~lrva~S~T 463 (518)
|....++ -++ +.+|+++|.+.++.... .=.+..-+.|... ....-.|+|.+++.
T Consensus 82 v~~~~~~----~~k-~~lG~~~inLaey~~~~-~~~~~~~~~l~~~----~~~~a~L~isi~~~ 135 (143)
T PF10358_consen 82 VFEVDGS----GKK-KVLGKVSINLAEYANED-EEPITVRLLLKKC----KKSNATLSISISLS 135 (143)
T ss_pred EEEecCC----Ccc-ceEEEEEEEHHHhhCcC-CCcEEEEEeCccC----CCCCcEEEEEEEEE
Confidence 6665321 122 78999999999999852 2234444555554 12234566666644
No 105
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=28.48 E-value=1e+02 Score=34.42 Aligned_cols=99 Identities=24% Similarity=0.350 Sum_probs=61.9
Q ss_pred EEEEEEeecCC-CCCcCCCCceEEEEeccCCCcccccc-cceee--eeccccceeEEEEeec---cccEEEEEEecCCCC
Q 010105 335 VFVEIVAVKNL-PEDHKDKGDLFVFFSKSQPDIFFNAK-QKLTI--LSKSGMKQVASFQCEA---TGELLFELVSHSTSK 407 (518)
Q Consensus 335 v~l~iv~~~nl-~~~~~~~~~lfVr~~~~q~d~~~~~~-~~~~i--~s~s~~~~~~~l~CE~---t~~lv~elr~~~~~~ 407 (518)
+-|.|.+++|| |-+.+--+.=||-+... ||..-+.+ ..-+| +-++.|+.++.|+=.| .+.|.+|+-----
T Consensus 182 l~v~i~ea~NLiPMDpNGlSDPYvk~kli-PD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr-- 258 (683)
T KOG0696|consen 182 LTVTIKEAKNLIPMDPNGLSDPYVKLKLI-PDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR-- 258 (683)
T ss_pred EEEEehhhccccccCCCCCCCcceeEEec-cCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc--
Confidence 45678999996 43444334668877643 45221111 12223 3467999999998885 4689999742111
Q ss_pred ccCCCCcccceeEEeecccccCCCCCceEEEEEeec
Q 010105 408 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLV 443 (518)
Q Consensus 408 l~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~ 443 (518)
....-.+|+.||..++|+++. +.-|+-|-
T Consensus 259 ---TsRNDFMGslSFgisEl~K~p----~~GWyKlL 287 (683)
T KOG0696|consen 259 ---TSRNDFMGSLSFGISELQKAP----VDGWYKLL 287 (683)
T ss_pred ---cccccccceecccHHHHhhcc----hhhHHHHh
Confidence 122345899999999999763 56676653
No 106
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=26.77 E-value=5e+02 Score=23.95 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=20.3
Q ss_pred EEEEEEEeecCCCCCc-----CCCCceEEEEecc
Q 010105 334 EVFVEIVAVKNLPEDH-----KDKGDLFVFFSKS 362 (518)
Q Consensus 334 ev~l~iv~~~nl~~~~-----~~~~~lfVr~~~~ 362 (518)
|+.|-|..++|++... +.++++||.....
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~ 34 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLD 34 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEc
Confidence 5677789999976422 1247889998854
No 107
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=23.54 E-value=1.8e+02 Score=27.85 Aligned_cols=59 Identities=20% Similarity=0.320 Sum_probs=40.3
Q ss_pred EEEeec--cccEEEEEEecCCCC-----------------c---cCCCCcccceeEEeecccccCCCCCceEEEEEeecc
Q 010105 387 SFQCEA--TGELLFELVSHSTSK-----------------I---PMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 444 (518)
Q Consensus 387 ~l~CE~--t~~lv~elr~~~~~~-----------------l---~~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~ 444 (518)
-.-||| ..+++|||...+.|. + -.+..++++|.-.+-|-.+|.+ +..++.-=+||.-
T Consensus 53 p~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s-~~~~~~~~vEL~G 131 (156)
T PF15627_consen 53 PCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCS-GNGSTSFTVELCG 131 (156)
T ss_pred ccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHhcc-CCCccceeEEEec
Confidence 456887 579999999887322 1 1233449999999999999987 4655555555654
Q ss_pred CC
Q 010105 445 RS 446 (518)
Q Consensus 445 ~~ 446 (518)
.+
T Consensus 132 ~~ 133 (156)
T PF15627_consen 132 VG 133 (156)
T ss_pred cC
Confidence 43
No 108
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=22.43 E-value=68 Score=30.16 Aligned_cols=47 Identities=15% Similarity=0.420 Sum_probs=33.9
Q ss_pred cccEEEEEEecCCCCcc-----CCCCcccceeEEeecccccCCCCCceEEEEEe
Q 010105 393 TGELLFELVSHSTSKIP-----MTGASKTMGTASLSLQNFISPISKLAVEQWFD 441 (518)
Q Consensus 393 t~~lv~elr~~~~~~l~-----~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~ 441 (518)
.++++||+--+.++... ..-+-=+||++.|+.+||+.-. =-++.|++
T Consensus 91 ~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~r--sGitGW~p 142 (143)
T cd08683 91 SAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKR--SGITGWYP 142 (143)
T ss_pred cceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcc--cCcccccc
Confidence 56999999776665432 2344558999999999999853 34567776
No 109
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=21.06 E-value=97 Score=36.23 Aligned_cols=119 Identities=18% Similarity=0.236 Sum_probs=69.2
Q ss_pred EEEEEEEeecCCCCCcC-CCCceEEEEeccCCCcccccccceeeeeccccceeEEEEee-c-c-ccEEEEEEecCCCCcc
Q 010105 334 EVFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-A-T-GELLFELVSHSTSKIP 409 (518)
Q Consensus 334 ev~l~iv~~~nl~~~~~-~~~~lfVr~~~~q~d~~~~~~~~~~i~s~s~~~~~~~l~CE-~-t-~~lv~elr~~~~~~l~ 409 (518)
.+.|.|+++||||+..- ...+-|-.....|--.+ . ...++=+=.+.|-. -|||| | | .-|-|=+.-+.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~-R-T~tv~ksL~PF~gE--e~~~~iP~~F~~l~fYv~D~d----- 76 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVC-R-TATVEKSLCPFFGE--EFYFEIPRTFRYLSFYVWDRD----- 76 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhh-h-hhhhhhhcCCcccc--ceEEecCcceeeEEEEEeccc-----
Confidence 47899999999997633 22344544433322111 0 00111122234444 57888 4 3 45555444322
Q ss_pred CCCCcccceeEEeecccccCCCCCceEEEEEeeccCCCCCC-CCCceEEEEEeecCCcc
Q 010105 410 MTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVS-SKPISLRIAVSFTIPTL 467 (518)
Q Consensus 410 ~~~~sk~lG~~s~~w~dll~~~~~Ls~E~w~~l~~~~~~~~-~~p~~lrva~S~Tppvq 467 (518)
++.-++||++.|+=.||..- | -.+.||.|.|-....- .--|.|++++ |+=.|
T Consensus 77 -~~~D~~IGKvai~re~l~~~-~--~~d~W~~L~~VD~dsEVQG~v~l~l~~--~e~~~ 129 (800)
T KOG2059|consen 77 -LKRDDIIGKVAIKREDLHMY-P--GKDTWFSLQPVDPDSEVQGKVHLELAL--TEAIQ 129 (800)
T ss_pred -cccccccceeeeeHHHHhhC-C--CCccceeccccCCChhhceeEEEEEEe--ccccC
Confidence 57889999999999999974 5 7899999988644322 3345555544 44444
Done!