BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010107
(518 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 143 DLDCKDLFSRNDPFLVIS-KIVESGTHIPVCKTEVLKNETKPTWKSVFLNIQQVGSKDSP 201
DL KD+F +DP++ +S + + + + +T+ +K P W F +V +
Sbjct: 32 DLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF--RVNPSNHR 89
Query: 202 LIIECFNFNSNGKHDLIGKVQKSLADL 228
L+ E F+ N + D +G+V L+ L
Sbjct: 90 LLFEVFDENRLTRDDFLGQVDVPLSHL 116
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 35.4 bits (80), Expect = 0.088, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 153 NDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVFLNIQQVGSKDSPLIIECFNFNSN 212
+DP++ + K++ + KT+ +++ P W F + KD L +E ++++
Sbjct: 38 SDPYVKL-KLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRT 96
Query: 213 GKHDLIGKVQKSLADLEKLHSSG 235
++D +G + +++L K+ +SG
Sbjct: 97 TRNDFMGSLSFGVSELMKMPASG 119
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 35.0 bits (79), Expect = 0.091, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 153 NDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVFLNIQQVGSKDSPLIIECFNFNSN 212
+DP++ + K++ + KT+ +++ P W F + KD L +E ++++
Sbjct: 37 SDPYVKL-KLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRT 95
Query: 213 GKHDLIGKVQKSLADLEKLHSSG 235
++D +G + +++L K+ +SG
Sbjct: 96 TRNDFMGSLSFGVSELMKMPASG 118
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 33.1 bits (74), Expect = 0.34, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 153 NDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVFLNIQQVGSKDSPLIIECFNFNSN 212
+DP++ + K++ + KT+ +++ P W F + KD L +E ++++
Sbjct: 39 SDPYVKL-KLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRT 97
Query: 213 GKHDLIGKVQKSLADLEKLHSSG 235
++D G + +++L K +SG
Sbjct: 98 TRNDFXGSLSFGVSELXKXPASG 120
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 153 NDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVFLNIQQVGSKDSPLIIECFNFNSN 212
+DP++ + K++ KT+ +K+ P W F + KD L +E ++++
Sbjct: 193 SDPYVKL-KLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT 251
Query: 213 GKHDLIGKVQKSLADLEKLHSSG 235
++D +G + +++L+K G
Sbjct: 252 SRNDFMGSLSFGISELQKAGVDG 274
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 153 NDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVFLNIQQVGSKDSPLIIECFNFNSN 212
+DP++ + K++ KT+ +K P W F + KD L +E ++++
Sbjct: 52 SDPYVKL-KLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT 110
Query: 213 GKHDLIGKVQKSLADLEKLHSSG 235
++D +G + +++L+K G
Sbjct: 111 SRNDFMGSLSFGISELQKAGVDG 133
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
Query: 118 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVL 177
CG+++ S IL+ DL KD +DP++ I + + +T+V
Sbjct: 7 CGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKF---QTKVH 63
Query: 178 KNETKPTWKSVF-LNIQQVGSKDSPLIIECFNFNSNGKHDLIGKV 221
+ P + F ++ L ++F+ +HDLIG+V
Sbjct: 64 RKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQV 108
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
Query: 118 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVL 177
CG+++ S IL+ DL KD +DP++ I + + +T+V
Sbjct: 6 CGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKF---QTKVH 62
Query: 178 KNETKPTWKSVF-LNIQQVGSKDSPLIIECFNFNSNGKHDLIGKV 221
+ P + F ++ L ++F+ +HDLIG+V
Sbjct: 63 RKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQV 107
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 126 EECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTW 185
E+ NS+ ++ L KD+ +DP++ ++ + +T+ +K P W
Sbjct: 14 EDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKW 73
Query: 186 KSVFLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADL 228
L +V + L+ E F+ N + D +G+V L L
Sbjct: 74 NEEILF--RVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPL 114
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 49/114 (42%), Gaps = 17/114 (14%)
Query: 116 KHCGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTE 175
++ G++ T T I++ +L KD +DPF+ I + + + +T+
Sbjct: 10 ENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKL---ETK 66
Query: 176 VLKNETKPTWKSVFLN--------IQQVGSKDSPLIIECFNFNSNGKHDLIGKV 221
V + P W FL +Q++ L ++ +++ ++D IG+V
Sbjct: 67 VKRKNLNPHWNETFLFEGFPYEKVVQRI------LYLQVLDYDRFSRNDPIGEV 114
>pdb|1P4E|C Chain C, Flpe W330f Mutant-Dna Holliday Junction Complex
pdb|1P4E|D Chain D, Flpe W330f Mutant-Dna Holliday Junction Complex
Length = 429
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 19 TEVVLNSLNPT-WITKHIITYQFEVVQTLVF--RIYDVDTQFHNVDVKTLKLVEQQFLG 74
TE +LNS T TK YQF + T + R D+ NVD K+ KLV+ ++LG
Sbjct: 157 TEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIK----NVDPKSFKLVQNKYLG 211
>pdb|1P4E|A Chain A, Flpe W330f Mutant-Dna Holliday Junction Complex
pdb|1P4E|B Chain B, Flpe W330f Mutant-Dna Holliday Junction Complex
Length = 429
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 19 TEVVLNSLNPT-WITKHIITYQFEVVQTLVF--RIYDVDTQFHNVDVKTLKLVEQQFLG 74
TE +LNS T TK YQF + T + R D+ NVD K+ KLV+ ++LG
Sbjct: 157 TEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIK----NVDPKSFKLVQNKYLG 211
>pdb|1M6X|A Chain A, Flpe-Holliday Junction Complex
pdb|1M6X|B Chain B, Flpe-Holliday Junction Complex
Length = 423
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 19 TEVVLNSLNPT-WITKHIITYQFEVVQTLVF--RIYDVDTQFHNVDVKTLKLVEQQFLG 74
TE +LNS T TK YQF + T + R D+ NVD K+ KLV+ ++LG
Sbjct: 158 TEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIK----NVDPKSFKLVQNKYLG 212
>pdb|1M6X|C Chain C, Flpe-Holliday Junction Complex
pdb|1M6X|D Chain D, Flpe-Holliday Junction Complex
Length = 423
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 19 TEVVLNSLNPT-WITKHIITYQFEVVQTLVF--RIYDVDTQFHNVDVKTLKLVEQQFLG 74
TE +LNS T TK YQF + T + R D+ NVD K+ KLV+ ++LG
Sbjct: 158 TEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIK----NVDPKSFKLVQNKYLG 212
>pdb|1FLO|A Chain A, Flp Recombinase-Holliday Junction Complex I
pdb|1FLO|B Chain B, Flp Recombinase-Holliday Junction Complex I
pdb|1FLO|C Chain C, Flp Recombinase-Holliday Junction Complex I
pdb|1FLO|D Chain D, Flp Recombinase-Holliday Junction Complex I
Length = 422
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 19 TEVVLNSLNPT-WITKHIITYQFEVVQTLVF--RIYDVDTQFHNVDVKTLKLVEQQFLG 74
TE +LNS T TK YQF + T + R D+ NVD K+ KLV+ ++LG
Sbjct: 157 TEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIK----NVDPKSFKLVQNKYLG 211
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/106 (18%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 138 ILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVF---LNIQQ 194
I++ ++L D+ +DP++ + + + +T+V + P + F + +
Sbjct: 48 IIQAAELPALDMGGTSDPYVKVFLLPDKKKKF---ETKVHRKTLNPVFNEQFTFKVPYSE 104
Query: 195 VGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 240
+G K L++ ++F+ KHD+IG+ + + ++ H + + ++L
Sbjct: 105 LGGK--TLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 148
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/106 (18%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 138 ILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVF---LNIQQ 194
I++ ++L D+ +DP++ + + + +T+V + P + F + +
Sbjct: 40 IIQAAELPALDMGGTSDPYVKVFLLPDKKKKF---ETKVHRKTLNPVFNEQFTFKVPYSE 96
Query: 195 VGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 240
+G K L++ ++F+ KHD+IG+ + + ++ H + + ++L
Sbjct: 97 LGGK--TLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/106 (18%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 138 ILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVF---LNIQQ 194
I++ ++L D+ +DP++ + + + +T+V + P + F + +
Sbjct: 40 IIQAAELPALDMGGTSDPYVKVFLLPDKKKKF---ETKVHRKTLNPVFNEQFTFKVPYSE 96
Query: 195 VGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 240
+G K L++ ++F+ KHD+IG+ + + ++ H + + ++L
Sbjct: 97 LGGKT--LVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140
>pdb|2VK9|A Chain A, Crystal Structure Of The Catalytic Domain Of Alpha-Toxin
From Clostridium Novyi
Length = 551
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 55/112 (49%), Gaps = 12/112 (10%)
Query: 360 YCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDG 419
YC+++ +PG+ ++ + + N + I A + + N+ KY +
Sbjct: 282 YCDLDFLPGVNLSLFNDISKPNGMDSNYWEAAIFEAIANEKKLMNNYPYKYM------EQ 335
Query: 420 VVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILDADKGERLESSTGR 471
V ++++E + V+ D ++ LI+ +G ++EIL + RL+++TG+
Sbjct: 336 VPSEIKERILSFVRNHD--INDLILPLGDIKISQLEILLS----RLKAATGK 381
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/106 (18%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 138 ILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVF---LNIQQ 194
I++ ++L D+ +DP++ + + + +T+V + P + F + +
Sbjct: 23 IIQAAELPALDMGGTSDPYVKVFLLPDKKKKF---ETKVHRKTLNPVFNEQFTFKVPYSE 79
Query: 195 VGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 240
+G K L++ ++F+ KHD+IG+ + + ++ H + + ++L
Sbjct: 80 LGGK--TLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 123
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At Atmospheric Pressure
pdb|3VL2|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 160 Mpa
pdb|3VL3|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 340 Mpa
pdb|3VL4|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 410 Mpa
pdb|3VL6|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 580 Mpa
pdb|3VL7|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 650 Mpa
pdb|3VMJ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1
Length = 375
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 342 RPIDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQ 401
RP + V C NL G E+ + G M +SA ++N G LF P +A IAG+
Sbjct: 245 RPDEFDVMLCSNLFGDILSDEIAMLTGSMGLLSSA--SMNSTGFGLFEPAGGSAPDIAGK 302
Query: 402 SLAN 405
+AN
Sbjct: 303 GIAN 306
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,589,810
Number of Sequences: 62578
Number of extensions: 603190
Number of successful extensions: 1346
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1335
Number of HSP's gapped (non-prelim): 31
length of query: 518
length of database: 14,973,337
effective HSP length: 103
effective length of query: 415
effective length of database: 8,527,803
effective search space: 3539038245
effective search space used: 3539038245
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)