Query 010107
Match_columns 518
No_of_seqs 306 out of 2226
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 21:08:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010107.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010107hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1327 Copine [Signal transdu 100.0 5E-117 1E-121 914.9 38.6 481 9-517 35-526 (529)
2 cd01459 vWA_copine_like VWA Co 100.0 2E-79 4.2E-84 598.0 23.4 247 249-505 3-254 (254)
3 PF07002 Copine: Copine; Inte 100.0 2.3E-53 5.1E-58 381.9 15.0 145 301-447 1-146 (146)
4 PF10138 vWA-TerF-like: vWA fo 100.0 6.2E-30 1.3E-34 238.4 19.7 198 281-515 2-200 (200)
5 KOG1028 Ca2+-dependent phospho 99.9 2.2E-22 4.9E-27 211.6 18.6 188 14-227 201-393 (421)
6 cd01457 vWA_ORF176_type VWA OR 99.8 2.5E-19 5.4E-24 171.2 14.6 175 282-489 4-187 (199)
7 cd04047 C2B_Copine C2 domain s 99.8 5.4E-18 1.2E-22 146.2 13.5 107 134-242 2-110 (110)
8 cd08393 C2A_SLP-1_2 C2 domain 99.8 6.8E-18 1.5E-22 149.2 12.1 122 118-240 1-124 (125)
9 cd08677 C2A_Synaptotagmin-13 C 99.7 1.6E-17 3.5E-22 143.8 10.3 104 119-229 1-107 (118)
10 cd04029 C2A_SLP-4_5 C2 domain 99.7 3.9E-17 8.6E-22 144.3 12.6 122 118-240 1-124 (125)
11 cd08381 C2B_PI3K_class_II C2 d 99.7 3.7E-17 8E-22 143.9 12.3 117 119-239 2-120 (122)
12 cd04028 C2B_RIM1alpha C2 domai 99.7 9.3E-17 2E-21 145.0 13.1 122 116-243 15-139 (146)
13 cd08385 C2A_Synaptotagmin-1-5- 99.7 1E-16 2.2E-21 141.3 12.4 120 118-240 2-122 (124)
14 cd08680 C2_Kibra C2 domain fou 99.7 1.4E-16 3E-21 140.4 11.2 111 120-230 2-113 (124)
15 cd08392 C2A_SLP-3 C2 domain fi 99.7 2.8E-16 6E-21 139.4 12.4 111 119-230 2-114 (128)
16 cd04030 C2C_KIAA1228 C2 domain 99.7 3.7E-16 8E-21 138.2 12.6 122 118-240 2-126 (127)
17 cd08387 C2A_Synaptotagmin-8 C2 99.7 3.1E-16 6.8E-21 138.2 11.9 120 118-240 2-122 (124)
18 cd04009 C2B_Munc13-like C2 dom 99.7 3.9E-16 8.4E-21 139.5 12.4 113 118-230 2-118 (133)
19 cd08406 C2B_Synaptotagmin-12 C 99.7 1.3E-16 2.8E-21 142.9 9.0 121 119-242 2-123 (136)
20 cd08386 C2A_Synaptotagmin-7 C2 99.7 4.6E-16 1E-20 137.2 12.0 120 118-240 2-123 (125)
21 cd04031 C2A_RIM1alpha C2 domai 99.7 5.5E-16 1.2E-20 136.6 12.2 121 118-240 2-124 (125)
22 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 9.3E-16 2E-20 135.0 13.5 119 134-261 2-121 (123)
23 cd08404 C2B_Synaptotagmin-4 C2 99.7 5.2E-16 1.1E-20 139.2 11.8 122 118-242 1-123 (136)
24 KOG2059 Ras GTPase-activating 99.7 5.4E-16 1.2E-20 164.1 13.6 228 1-263 29-274 (800)
25 cd08521 C2A_SLP C2 domain firs 99.7 8.6E-16 1.9E-20 135.0 12.3 111 119-230 1-113 (123)
26 cd04048 C2A_Copine C2 domain f 99.7 1.3E-15 2.8E-20 133.5 12.6 105 134-240 2-112 (120)
27 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 8.7E-16 1.9E-20 141.8 11.7 112 118-230 1-126 (162)
28 cd04042 C2A_MCTP_PRT C2 domain 99.6 2E-15 4.2E-20 132.6 13.3 114 134-261 2-116 (121)
29 KOG0696 Serine/threonine prote 99.6 1.7E-16 3.7E-21 159.7 6.6 125 114-243 164-289 (683)
30 cd08685 C2_RGS-like C2 domain 99.6 1.5E-15 3.3E-20 133.0 11.7 107 119-230 1-109 (119)
31 cd08407 C2B_Synaptotagmin-13 C 99.6 9E-16 1.9E-20 137.6 10.3 106 119-227 2-112 (138)
32 cd08390 C2A_Synaptotagmin-15-1 99.6 2.2E-15 4.8E-20 132.4 11.7 110 119-231 1-112 (123)
33 cd08388 C2A_Synaptotagmin-4-11 99.6 2.3E-15 5E-20 133.6 11.8 110 118-230 2-114 (128)
34 cd08682 C2_Rab11-FIP_classI C2 99.6 3.5E-15 7.6E-20 131.9 12.7 117 135-261 2-124 (126)
35 cd08389 C2A_Synaptotagmin-14_1 99.6 2.4E-15 5.1E-20 132.8 11.0 109 118-230 2-112 (124)
36 cd08402 C2B_Synaptotagmin-1 C2 99.6 1.3E-15 2.8E-20 136.5 9.1 122 118-242 1-123 (136)
37 cd08384 C2B_Rabphilin_Doc2 C2 99.6 1.5E-15 3.3E-20 135.5 8.7 120 120-242 1-121 (133)
38 cd08408 C2B_Synaptotagmin-14_1 99.6 4.5E-15 9.7E-20 133.4 11.7 110 119-228 2-112 (138)
39 cd08403 C2B_Synaptotagmin-3-5- 99.6 1.7E-15 3.8E-20 135.4 9.0 108 119-227 1-109 (134)
40 cd04016 C2_Tollip C2 domain pr 99.6 1.1E-14 2.5E-19 127.5 13.7 113 134-262 4-119 (121)
41 cd08405 C2B_Synaptotagmin-7 C2 99.6 4.2E-15 9.1E-20 133.2 10.9 110 118-228 1-111 (136)
42 cd08395 C2C_Munc13 C2 domain t 99.6 6E-15 1.3E-19 129.0 11.6 96 134-230 2-100 (120)
43 cd04033 C2_NEDD4_NEDD4L C2 dom 99.6 2.6E-14 5.7E-19 127.4 13.9 120 134-261 2-129 (133)
44 cd08681 C2_fungal_Inn1p-like C 99.6 2E-14 4.4E-19 125.4 12.9 111 134-261 3-115 (118)
45 cd04022 C2A_MCTP_PRT_plant C2 99.6 1.7E-14 3.6E-19 127.8 12.5 117 134-261 2-122 (127)
46 cd08377 C2C_MCTP_PRT C2 domain 99.6 2E-14 4.3E-19 125.5 12.8 112 134-261 3-115 (119)
47 cd04036 C2_cPLA2 C2 domain pre 99.6 1.3E-14 2.9E-19 126.9 11.5 111 135-261 3-114 (119)
48 cd08379 C2D_MCTP_PRT_plant C2 99.6 2E-14 4.3E-19 126.8 12.6 114 134-260 2-125 (126)
49 cd08410 C2B_Synaptotagmin-17 C 99.6 1.3E-14 2.8E-19 130.0 11.5 109 119-228 1-110 (135)
50 cd04026 C2_PKC_alpha_gamma C2 99.6 2.5E-14 5.4E-19 127.3 12.7 122 118-244 1-123 (131)
51 cd04035 C2A_Rabphilin_Doc2 C2 99.6 1.9E-14 4.1E-19 126.6 11.1 111 118-230 1-113 (123)
52 cd08409 C2B_Synaptotagmin-15 C 99.6 9.5E-15 2.1E-19 131.2 9.3 121 118-242 1-124 (137)
53 cd08375 C2_Intersectin C2 doma 99.6 4.2E-14 9.2E-19 126.8 12.7 89 134-230 17-106 (136)
54 cd08678 C2_C21orf25-like C2 do 99.6 5E-14 1.1E-18 124.6 12.9 116 134-262 1-117 (126)
55 cd04041 C2A_fungal C2 domain f 99.5 3.5E-14 7.6E-19 122.7 10.8 94 134-230 3-99 (111)
56 cd04046 C2_Calpain C2 domain p 99.5 7.7E-14 1.7E-18 123.4 13.1 112 135-261 6-118 (126)
57 cd08688 C2_KIAA0528-like C2 do 99.5 4.3E-14 9.3E-19 122.0 11.0 102 135-242 2-109 (110)
58 cd00276 C2B_Synaptotagmin C2 d 99.5 2.3E-14 5.1E-19 127.6 9.7 122 119-243 1-123 (134)
59 cd08401 C2A_RasA2_RasA3 C2 dom 99.5 1.1E-13 2.5E-18 121.5 13.6 114 135-261 3-118 (121)
60 cd08376 C2B_MCTP_PRT C2 domain 99.5 9.5E-14 2.1E-18 120.8 13.0 88 135-230 3-91 (116)
61 cd04024 C2A_Synaptotagmin-like 99.5 9.6E-14 2.1E-18 122.7 13.2 117 135-262 4-126 (128)
62 cd08692 C2B_Tac2-N C2 domain s 99.5 5.3E-14 1.1E-18 124.8 11.3 107 120-228 2-110 (135)
63 cd04039 C2_PSD C2 domain prese 99.5 7.4E-14 1.6E-18 120.1 11.6 90 134-230 3-97 (108)
64 cd04010 C2B_RasA3 C2 domain se 99.5 9.2E-14 2E-18 126.1 12.3 108 134-244 2-124 (148)
65 cd04054 C2A_Rasal1_RasA4 C2 do 99.5 1.7E-13 3.6E-18 120.4 13.5 115 134-261 2-118 (121)
66 cd04019 C2C_MCTP_PRT_plant C2 99.5 1.5E-13 3.2E-18 125.2 13.4 120 134-262 2-129 (150)
67 KOG1030 Predicted Ca2+-depende 99.5 4E-14 8.6E-19 127.6 9.3 86 136-230 10-96 (168)
68 cd08382 C2_Smurf-like C2 domai 99.5 1.5E-13 3.3E-18 121.0 13.0 115 135-261 3-121 (123)
69 cd08373 C2A_Ferlin C2 domain f 99.5 9.1E-14 2E-18 123.0 11.2 111 137-261 1-112 (127)
70 cd08691 C2_NEDL1-like C2 domai 99.5 3.2E-13 7E-18 120.9 14.2 90 136-231 5-107 (137)
71 cd04048 C2A_Copine C2 domain f 99.5 1.8E-13 3.9E-18 119.9 10.9 90 1-97 24-114 (120)
72 cd04027 C2B_Munc13 C2 domain s 99.5 3.4E-13 7.3E-18 119.5 12.6 112 134-261 3-126 (127)
73 cd08391 C2A_C2C_Synaptotagmin_ 99.5 4.5E-13 9.8E-18 117.1 12.7 108 135-261 4-118 (121)
74 cd08378 C2B_MCTP_PRT_plant C2 99.5 5.8E-13 1.2E-17 117.0 11.8 109 134-261 2-116 (121)
75 cd04044 C2A_Tricalbin-like C2 99.5 7E-13 1.5E-17 116.4 12.2 114 134-261 4-119 (124)
76 cd04045 C2C_Tricalbin-like C2 99.4 8.5E-13 1.8E-17 115.8 12.2 101 135-244 4-105 (120)
77 cd04032 C2_Perforin C2 domain 99.4 3E-13 6.4E-18 119.6 9.3 88 134-229 30-118 (127)
78 cd04043 C2_Munc13_fungal C2 do 99.4 3.1E-12 6.7E-17 112.9 14.8 91 135-230 4-95 (126)
79 KOG1028 Ca2+-dependent phospho 99.4 1.5E-12 3.3E-17 137.3 15.0 162 116-292 151-313 (421)
80 cd04040 C2D_Tricalbin-like C2 99.4 1.3E-12 2.8E-17 113.4 11.7 88 136-230 3-91 (115)
81 cd08676 C2A_Munc13-like C2 dom 99.4 8.8E-13 1.9E-17 120.2 11.1 101 133-240 29-153 (153)
82 cd04015 C2_plant_PLD C2 domain 99.4 2E-12 4.4E-17 118.9 13.5 115 134-261 9-154 (158)
83 cd04051 C2_SRC2_like C2 domain 99.4 1.4E-12 3E-17 115.0 11.6 115 134-260 2-125 (125)
84 cd08675 C2B_RasGAP C2 domain s 99.4 1.4E-12 3.1E-17 117.0 11.8 104 135-241 2-119 (137)
85 cd08690 C2_Freud-1 C2 domain f 99.4 2E-12 4.4E-17 117.8 12.7 115 139-261 11-133 (155)
86 cd04017 C2D_Ferlin C2 domain f 99.4 1.7E-12 3.7E-17 116.2 11.8 114 134-261 3-128 (135)
87 cd04018 C2C_Ferlin C2 domain t 99.4 1.1E-12 2.4E-17 119.4 10.6 90 134-230 2-106 (151)
88 cd04037 C2E_Ferlin C2 domain f 99.4 1.5E-12 3.2E-17 114.9 10.8 89 135-229 3-92 (124)
89 cd04050 C2B_Synaptotagmin-like 99.4 1.8E-12 3.8E-17 110.9 10.7 87 134-231 2-89 (105)
90 cd04049 C2_putative_Elicitor-r 99.4 3.5E-12 7.7E-17 112.3 11.9 101 134-240 3-106 (124)
91 cd04021 C2_E3_ubiquitin_ligase 99.4 5E-12 1.1E-16 111.7 12.7 88 134-231 4-92 (125)
92 cd04038 C2_ArfGAP C2 domain pr 99.4 2.6E-12 5.6E-17 116.3 10.8 87 134-230 4-91 (145)
93 cd08400 C2_Ras_p21A1 C2 domain 99.4 1E-11 2.3E-16 109.8 13.5 115 133-262 5-120 (126)
94 cd04042 C2A_MCTP_PRT C2 domain 99.4 7.1E-12 1.5E-16 109.9 11.6 96 1-127 24-119 (121)
95 cd04036 C2_cPLA2 C2 domain pre 99.3 5.4E-12 1.2E-16 110.3 9.3 82 1-97 24-105 (119)
96 cd04014 C2_PKC_epsilon C2 doma 99.3 2.2E-11 4.9E-16 108.5 13.1 88 134-230 6-104 (132)
97 cd08678 C2_C21orf25-like C2 do 99.3 1.2E-11 2.6E-16 109.3 11.2 102 1-130 21-122 (126)
98 cd08682 C2_Rab11-FIP_classI C2 99.3 1.2E-11 2.5E-16 109.4 10.6 96 1-125 23-125 (126)
99 cd08376 C2B_MCTP_PRT C2 domain 99.3 1.3E-11 2.9E-16 107.2 10.6 80 1-97 24-103 (116)
100 cd08401 C2A_RasA2_RasA3 C2 dom 99.3 1.7E-11 3.6E-16 107.7 10.4 96 1-126 25-120 (121)
101 cd04016 C2_Tollip C2 domain pr 99.3 2.2E-11 4.8E-16 106.7 10.9 95 1-127 25-121 (121)
102 KOG1013 Synaptic vesicle prote 99.3 2.7E-12 5.9E-17 126.1 5.4 192 17-228 132-329 (362)
103 cd08686 C2_ABR C2 domain in th 99.3 2.1E-11 4.6E-16 105.4 9.9 82 135-226 2-91 (118)
104 cd04011 C2B_Ferlin C2 domain s 99.3 1.6E-11 3.5E-16 106.0 9.0 87 134-230 6-95 (111)
105 cd08391 C2A_C2C_Synaptotagmin_ 99.3 2.4E-11 5.1E-16 106.2 9.6 90 1-126 31-120 (121)
106 cd04025 C2B_RasA1_RasA4 C2 dom 99.3 3.5E-11 7.6E-16 105.8 10.3 80 1-97 24-103 (123)
107 cd08373 C2A_Ferlin C2 domain f 99.3 5.2E-11 1.1E-15 105.3 11.4 100 1-131 18-119 (127)
108 cd04044 C2A_Tricalbin-like C2 99.2 2.7E-11 5.9E-16 106.3 9.2 96 1-128 27-123 (124)
109 cd00275 C2_PLC_like C2 domain 99.2 1.1E-10 2.4E-15 103.0 13.1 116 134-260 4-123 (128)
110 cd08394 C2A_Munc13 C2 domain f 99.2 6.5E-11 1.4E-15 103.7 11.3 94 134-241 4-100 (127)
111 cd04024 C2A_Synaptotagmin-like 99.2 4.3E-11 9.2E-16 105.7 10.1 98 1-126 27-127 (128)
112 cd08681 C2_fungal_Inn1p-like C 99.2 2E-11 4.3E-16 106.4 7.8 92 1-126 25-117 (118)
113 cd08375 C2_Intersectin C2 doma 99.2 4.3E-11 9.3E-16 107.3 9.7 68 1-85 39-106 (136)
114 COG5038 Ca2+-dependent lipid-b 99.2 4.1E-10 8.9E-15 126.2 19.3 98 134-240 1042-1140(1227)
115 cd04033 C2_NEDD4_NEDD4L C2 dom 99.2 6.2E-11 1.3E-15 105.6 10.4 102 1-127 24-132 (133)
116 cd08395 C2C_Munc13 C2 domain t 99.2 7.6E-11 1.6E-15 103.2 10.6 86 1-97 23-112 (120)
117 cd04043 C2_Munc13_fungal C2 do 99.2 1.2E-10 2.5E-15 102.8 11.0 83 1-97 25-110 (126)
118 cd08378 C2B_MCTP_PRT_plant C2 99.2 5E-11 1.1E-15 104.7 8.4 94 1-126 20-118 (121)
119 cd08677 C2A_Synaptotagmin-13 C 99.2 2.8E-11 6.1E-16 104.9 6.6 82 1-95 35-118 (118)
120 cd04054 C2A_Rasal1_RasA4 C2 do 99.2 1E-10 2.3E-15 102.6 10.2 95 1-125 24-119 (121)
121 cd04047 C2B_Copine C2 domain s 99.2 9.1E-11 2E-15 101.0 9.6 75 1-87 24-102 (110)
122 cd04052 C2B_Tricalbin-like C2 99.2 1.8E-10 3.8E-15 99.6 11.4 96 149-262 9-106 (111)
123 cd08393 C2A_SLP-1_2 C2 domain 99.2 3.6E-11 7.7E-16 106.2 6.7 84 1-96 40-125 (125)
124 cd04022 C2A_MCTP_PRT_plant C2 99.2 8.3E-11 1.8E-15 104.1 9.0 96 1-126 24-124 (127)
125 cd04052 C2B_Tricalbin-like C2 99.2 1.3E-10 2.8E-15 100.5 9.8 94 1-129 16-110 (111)
126 cd08379 C2D_MCTP_PRT_plant C2 99.2 1.8E-10 3.8E-15 101.8 10.3 85 1-97 27-111 (126)
127 cd04010 C2B_RasA3 C2 domain se 99.2 2.3E-10 5E-15 103.9 11.2 90 1-102 22-127 (148)
128 PLN03008 Phospholipase D delta 99.2 2E-10 4.4E-15 126.7 12.5 99 150-261 74-173 (868)
129 cd08382 C2_Smurf-like C2 domai 99.2 1.4E-10 2.9E-15 102.2 9.1 81 1-97 24-105 (123)
130 cd04040 C2D_Tricalbin-like C2 99.2 1.6E-10 3.5E-15 100.1 9.4 81 1-97 23-103 (115)
131 cd08400 C2_Ras_p21A1 C2 domain 99.1 3.3E-10 7.2E-15 100.2 11.3 100 1-129 25-124 (126)
132 cd04029 C2A_SLP-4_5 C2 domain 99.1 1E-10 2.3E-15 103.3 8.0 83 1-95 40-124 (125)
133 cd08387 C2A_Synaptotagmin-8 C2 99.1 1.2E-10 2.7E-15 102.4 8.4 82 1-96 40-123 (124)
134 cd04030 C2C_KIAA1228 C2 domain 99.1 1.2E-10 2.5E-15 102.9 7.7 85 1-95 40-126 (127)
135 cd04015 C2_plant_PLD C2 domain 99.1 4.8E-10 1E-14 103.1 11.7 97 1-127 61-157 (158)
136 cd08390 C2A_Synaptotagmin-15-1 99.1 2.3E-10 5E-15 100.4 8.9 82 1-96 39-122 (123)
137 cd04028 C2B_RIM1alpha C2 domai 99.1 3E-10 6.5E-15 102.7 9.7 84 1-97 54-138 (146)
138 cd04041 C2A_fungal C2 domain f 99.1 1.4E-10 3E-15 100.2 7.3 78 1-95 26-106 (111)
139 cd08690 C2_Freud-1 C2 domain f 99.1 3.6E-10 7.8E-15 103.1 10.1 74 14-97 40-121 (155)
140 cd08385 C2A_Synaptotagmin-1-5- 99.1 1.8E-10 4E-15 101.3 7.9 82 1-96 40-123 (124)
141 cd08383 C2A_RasGAP C2 domain ( 99.1 7E-10 1.5E-14 96.3 11.4 111 135-261 3-114 (117)
142 cd04014 C2_PKC_epsilon C2 doma 99.1 4.7E-10 1E-14 99.9 10.5 89 1-127 38-128 (132)
143 cd08377 C2C_MCTP_PRT C2 domain 99.1 5E-10 1.1E-14 97.6 10.2 93 1-126 25-117 (119)
144 cd04039 C2_PSD C2 domain prese 99.1 2.4E-10 5.1E-15 98.3 8.0 70 1-87 29-99 (108)
145 cd04031 C2A_RIM1alpha C2 domai 99.1 2E-10 4.3E-15 101.1 7.2 83 1-96 40-125 (125)
146 cd04021 C2_E3_ubiquitin_ligase 99.1 5.4E-10 1.2E-14 98.7 9.8 79 1-97 25-108 (125)
147 cd08381 C2B_PI3K_class_II C2 d 99.1 2E-10 4.4E-15 101.0 6.9 83 1-95 36-121 (122)
148 PF00168 C2: C2 domain; Inter 99.1 9.1E-10 2E-14 89.1 10.0 83 135-222 2-85 (85)
149 cd08688 C2_KIAA0528-like C2 do 99.1 3.4E-10 7.3E-15 97.6 7.4 80 1-97 24-109 (110)
150 cd04013 C2_SynGAP_like C2 doma 99.1 2.6E-09 5.7E-14 96.5 13.3 116 132-261 11-135 (146)
151 cd08388 C2A_Synaptotagmin-4-11 99.1 5.5E-10 1.2E-14 99.1 8.8 82 1-96 41-127 (128)
152 cd04019 C2C_MCTP_PRT_plant C2 99.1 1.1E-09 2.3E-14 99.9 10.7 104 1-128 24-132 (150)
153 cd08386 C2A_Synaptotagmin-7 C2 99.1 5.3E-10 1.2E-14 98.4 8.4 82 1-96 40-124 (125)
154 KOG1030 Predicted Ca2+-depende 99.0 4.1E-10 8.9E-15 101.8 6.6 69 1-87 30-98 (168)
155 cd04032 C2_Perforin C2 domain 99.0 4.7E-10 1E-14 99.2 6.8 60 16-86 60-120 (127)
156 cd08680 C2_Kibra C2 domain fou 99.0 4.2E-10 9.1E-15 99.2 6.2 83 2-95 39-124 (124)
157 cd04027 C2B_Munc13 C2 domain s 99.0 2E-09 4.3E-14 95.3 10.2 102 1-124 25-126 (127)
158 PLN03200 cellulose synthase-in 99.0 1.1E-09 2.3E-14 131.4 11.1 102 132-242 1980-2082(2102)
159 cd08374 C2F_Ferlin C2 domain s 99.0 1.8E-09 3.8E-14 95.9 9.7 94 134-230 2-123 (133)
160 COG5038 Ca2+-dependent lipid-b 99.0 1.3E-08 2.8E-13 114.4 18.6 226 2-261 603-836 (1227)
161 cd08521 C2A_SLP C2 domain firs 99.0 8.1E-10 1.8E-14 96.9 7.0 83 1-95 39-123 (123)
162 cd08675 C2B_RasGAP C2 domain s 99.0 1.3E-09 2.8E-14 97.8 8.4 84 1-97 22-120 (137)
163 cd04046 C2_Calpain C2 domain p 99.0 3.4E-09 7.3E-14 93.7 10.9 94 1-126 27-120 (126)
164 cd04035 C2A_Rabphilin_Doc2 C2 99.0 1.7E-09 3.6E-14 95.1 7.7 82 1-95 39-123 (123)
165 cd08691 C2_NEDL1-like C2 domai 99.0 7.1E-09 1.5E-13 92.9 11.6 86 1-97 24-121 (137)
166 cd04051 C2_SRC2_like C2 domain 98.9 2E-09 4.2E-14 94.9 7.4 81 1-97 24-114 (125)
167 cd04050 C2B_Synaptotagmin-like 98.9 2.6E-09 5.7E-14 91.2 7.8 77 1-97 24-102 (105)
168 cd04026 C2_PKC_alpha_gamma C2 98.9 2.7E-09 5.9E-14 94.8 8.0 84 1-97 37-121 (131)
169 cd04017 C2D_Ferlin C2 domain f 98.9 7E-09 1.5E-13 92.8 10.6 88 15-129 33-133 (135)
170 cd04020 C2B_SLP_1-2-3-4 C2 dom 98.9 1.8E-09 3.8E-14 99.8 6.9 85 1-97 51-138 (162)
171 cd08676 C2A_Munc13-like C2 dom 98.9 2.8E-09 6.1E-14 97.2 7.8 66 14-95 88-153 (153)
172 cd04009 C2B_Munc13-like C2 dom 98.9 1.9E-09 4.2E-14 96.2 6.6 75 1-86 40-119 (133)
173 cd08392 C2A_SLP-3 C2 domain fi 98.9 2.9E-09 6.2E-14 94.5 7.4 83 1-95 40-127 (128)
174 PLN03008 Phospholipase D delta 98.9 1.3E-08 2.9E-13 112.6 13.6 145 1-183 80-225 (868)
175 cd04038 C2_ArfGAP C2 domain pr 98.9 4.4E-09 9.6E-14 95.2 7.6 69 1-87 25-93 (145)
176 cd00275 C2_PLC_like C2 domain 98.9 1.7E-08 3.6E-13 89.0 11.0 98 1-126 28-126 (128)
177 cd04045 C2C_Tricalbin-like C2 98.9 7.8E-09 1.7E-13 90.6 8.8 79 1-97 25-103 (120)
178 cd04037 C2E_Ferlin C2 domain f 98.9 7.3E-09 1.6E-13 91.3 8.5 70 1-85 24-93 (124)
179 cd08685 C2_RGS-like C2 domain 98.9 4E-09 8.7E-14 92.3 6.8 84 1-95 35-119 (119)
180 cd08686 C2_ABR C2 domain in th 98.9 1E-08 2.2E-13 88.8 9.0 88 1-95 18-107 (118)
181 cd08389 C2A_Synaptotagmin-14_1 98.9 5.7E-09 1.2E-13 92.0 7.3 70 15-96 51-123 (124)
182 cd04011 C2B_Ferlin C2 domain s 98.8 8.4E-09 1.8E-13 89.0 7.9 80 1-97 24-110 (111)
183 cd08384 C2B_Rabphilin_Doc2 C2 98.8 4.6E-09 1E-13 93.5 6.5 81 1-95 37-119 (133)
184 cd04049 C2_putative_Elicitor-r 98.8 1.1E-08 2.3E-13 90.1 8.3 80 1-97 25-108 (124)
185 cd04013 C2_SynGAP_like C2 doma 98.8 3.4E-08 7.3E-13 89.3 11.6 84 1-97 30-113 (146)
186 cd08404 C2B_Synaptotagmin-4 C2 98.8 2.4E-09 5.1E-14 95.9 3.8 83 1-97 39-123 (136)
187 cd08394 C2A_Munc13 C2 domain f 98.8 2.4E-08 5.3E-13 87.6 8.7 77 1-97 23-101 (127)
188 smart00239 C2 Protein kinase C 98.8 6.4E-08 1.4E-12 80.1 10.8 90 136-230 4-94 (101)
189 cd04018 C2C_Ferlin C2 domain t 98.8 2.6E-08 5.6E-13 90.8 9.0 61 16-87 47-108 (151)
190 cd08402 C2B_Synaptotagmin-1 C2 98.8 1.2E-08 2.6E-13 91.3 6.1 71 1-83 39-111 (136)
191 cd00030 C2 C2 domain. The C2 d 98.7 1.1E-07 2.4E-12 78.2 10.9 87 136-229 3-90 (102)
192 cd00276 C2B_Synaptotagmin C2 d 98.7 1.1E-08 2.4E-13 90.9 4.4 83 1-97 38-122 (134)
193 cd08405 C2B_Synaptotagmin-7 C2 98.7 1.9E-08 4.1E-13 90.1 5.7 81 1-95 39-121 (136)
194 cd08383 C2A_RasGAP C2 domain ( 98.7 1.4E-07 3.1E-12 81.7 10.8 94 1-126 21-116 (117)
195 cd08410 C2B_Synaptotagmin-17 C 98.7 2.8E-08 6E-13 88.9 6.3 68 1-80 38-107 (135)
196 cd08403 C2B_Synaptotagmin-3-5- 98.7 2.4E-08 5.3E-13 89.1 5.5 81 1-95 38-120 (134)
197 KOG1011 Neurotransmitter relea 98.7 3.1E-08 6.6E-13 104.5 6.9 112 134-261 297-420 (1283)
198 cd08407 C2B_Synaptotagmin-13 C 98.7 3.2E-08 6.9E-13 88.8 6.1 81 1-95 41-123 (138)
199 cd01461 vWA_interalpha_trypsin 98.7 6.7E-07 1.5E-11 82.5 14.7 149 281-461 3-152 (171)
200 cd08408 C2B_Synaptotagmin-14_1 98.6 7.9E-08 1.7E-12 86.4 7.0 71 1-82 39-111 (138)
201 cd08406 C2B_Synaptotagmin-12 C 98.6 5.7E-08 1.2E-12 87.0 5.5 81 1-95 39-121 (136)
202 cd01471 vWA_micronemal_protein 98.6 8E-07 1.7E-11 83.7 12.4 156 281-460 1-160 (186)
203 KOG0696 Serine/threonine prote 98.6 2.5E-08 5.5E-13 101.4 2.3 70 15-96 217-287 (683)
204 smart00327 VWA von Willebrand 98.5 1.8E-06 3.8E-11 79.5 12.8 152 281-461 2-158 (177)
205 PLN02223 phosphoinositide phos 98.5 1E-06 2.3E-11 94.1 11.5 105 134-244 411-521 (537)
206 PF00168 C2: C2 domain; Inter 98.5 5.4E-07 1.2E-11 72.6 7.3 63 1-77 23-85 (85)
207 cd08409 C2B_Synaptotagmin-15 C 98.5 1.4E-07 3E-12 84.7 4.0 83 1-95 38-122 (137)
208 cd01463 vWA_VGCC_like VWA Volt 98.4 7E-06 1.5E-10 77.7 15.5 157 279-460 12-178 (190)
209 PLN03200 cellulose synthase-in 98.4 4.7E-07 1E-11 109.3 8.2 80 1-97 2002-2082(2102)
210 cd00030 C2 C2 domain. The C2 d 98.4 8.9E-07 1.9E-11 72.7 7.3 71 14-95 31-102 (102)
211 KOG1328 Synaptic vesicle prote 98.4 1.2E-07 2.5E-12 101.6 2.3 112 118-229 933-1048(1103)
212 PLN02952 phosphoinositide phos 98.4 2.4E-06 5.1E-11 93.2 12.3 106 133-244 471-583 (599)
213 PLN02228 Phosphoinositide phos 98.3 4.8E-06 1E-10 90.2 13.3 126 134-271 433-566 (567)
214 smart00239 C2 Protein kinase C 98.3 1.7E-06 3.8E-11 71.3 7.6 72 2-87 25-96 (101)
215 cd01450 vWFA_subfamily_ECM Von 98.3 9.2E-06 2E-10 73.7 12.5 148 282-459 2-153 (161)
216 cd01464 vWA_subfamily VWA subf 98.3 4.2E-06 9E-11 78.2 10.3 148 281-461 4-161 (176)
217 KOG0905 Phosphoinositide 3-kin 98.3 7.1E-07 1.5E-11 100.1 5.0 120 116-240 1510-1633(1639)
218 cd00198 vWFA Von Willebrand fa 98.3 2.3E-05 5.1E-10 70.1 14.1 146 282-460 2-154 (161)
219 cd01466 vWA_C3HC4_type VWA C3H 98.3 1.6E-05 3.4E-10 72.7 12.9 146 281-461 1-147 (155)
220 cd01465 vWA_subgroup VWA subgr 98.3 2.6E-05 5.6E-10 71.9 14.3 146 281-459 1-151 (170)
221 PLN02230 phosphoinositide phos 98.2 5.5E-06 1.2E-10 90.2 11.1 105 134-244 471-582 (598)
222 cd01482 vWA_collagen_alphaI-XI 98.2 1.6E-05 3.4E-10 73.4 12.7 145 282-460 2-152 (164)
223 KOG2059 Ras GTPase-activating 98.2 3.2E-06 6.9E-11 91.0 8.6 114 134-261 7-121 (800)
224 KOG1328 Synaptic vesicle prote 98.2 5.1E-07 1.1E-11 96.8 2.6 116 138-261 120-297 (1103)
225 cd01454 vWA_norD_type norD typ 98.2 2.5E-05 5.4E-10 72.7 13.6 142 282-450 2-154 (174)
226 cd08692 C2B_Tac2-N C2 domain s 98.2 3.5E-06 7.7E-11 75.0 7.3 70 14-95 50-121 (135)
227 cd08374 C2F_Ferlin C2 domain s 98.2 6.4E-06 1.4E-10 73.2 7.7 62 14-86 38-124 (133)
228 PLN02222 phosphoinositide phos 98.1 1.6E-05 3.4E-10 86.5 11.2 105 134-244 454-565 (581)
229 PLN02952 phosphoinositide phos 98.1 2.3E-05 4.9E-10 85.6 11.0 68 16-97 514-581 (599)
230 TIGR03788 marine_srt_targ mari 98.1 6.5E-05 1.4E-09 83.7 14.9 148 279-458 270-418 (596)
231 cd01480 vWA_collagen_alpha_1-V 98.0 6.9E-05 1.5E-09 70.7 12.6 150 279-460 1-162 (186)
232 KOG0169 Phosphoinositide-speci 98.0 2.5E-05 5.4E-10 85.4 10.3 105 134-244 618-728 (746)
233 cd01456 vWA_ywmD_type VWA ywmD 98.0 8.2E-05 1.8E-09 71.3 12.3 166 278-461 18-192 (206)
234 cd01470 vWA_complement_factors 98.0 8.7E-05 1.9E-09 70.6 12.3 156 281-461 1-178 (198)
235 cd01472 vWA_collagen von Wille 98.0 0.0001 2.2E-09 67.8 12.1 148 281-461 1-153 (164)
236 PLN02270 phospholipase D alpha 98.0 7.7E-05 1.7E-09 83.2 13.0 87 151-246 45-133 (808)
237 cd01473 vWA_CTRP CTRP for CS 97.9 0.00036 7.9E-09 66.2 15.8 154 282-460 2-161 (192)
238 PTZ00441 sporozoite surface pr 97.9 0.00026 5.7E-09 76.5 16.3 154 280-458 42-199 (576)
239 cd01476 VWA_integrin_invertebr 97.9 0.00013 2.7E-09 67.0 11.9 146 281-458 1-154 (163)
240 PLN02223 phosphoinositide phos 97.9 6.1E-05 1.3E-09 80.8 10.9 67 17-97 453-519 (537)
241 PF13519 VWA_2: von Willebrand 97.9 0.00019 4.2E-09 65.5 13.0 145 282-458 1-148 (172)
242 cd08689 C2_fungal_Pkc1p C2 dom 97.9 7.9E-05 1.7E-09 62.9 8.7 82 136-230 3-88 (109)
243 cd01474 vWA_ATR ATR (Anthrax T 97.8 0.00029 6.4E-09 66.2 12.7 149 280-460 4-156 (185)
244 KOG1031 Predicted Ca2+-depende 97.8 3.8E-05 8.3E-10 80.8 6.9 88 136-229 7-97 (1169)
245 cd01477 vWA_F09G8-8_type VWA F 97.8 0.00062 1.4E-08 64.7 14.5 155 277-458 16-182 (193)
246 PLN02222 phosphoinositide phos 97.8 6.2E-05 1.3E-09 82.0 8.5 68 16-97 496-563 (581)
247 PF13768 VWA_3: von Willebrand 97.7 0.00043 9.2E-09 63.0 12.2 143 282-459 2-147 (155)
248 cd01469 vWA_integrins_alpha_su 97.7 0.00029 6.3E-09 65.9 11.1 148 281-458 1-157 (177)
249 cd01453 vWA_transcription_fact 97.7 0.0006 1.3E-08 64.2 13.1 154 278-461 1-158 (183)
250 PLN02230 phosphoinositide phos 97.7 7.3E-05 1.6E-09 81.6 7.4 67 17-97 514-580 (598)
251 cd01467 vWA_BatA_type VWA BatA 97.7 0.00091 2E-08 62.2 13.4 152 281-461 3-167 (180)
252 cd01451 vWA_Magnesium_chelatas 97.6 0.0014 3.1E-08 61.2 14.3 145 283-459 3-155 (178)
253 cd01462 VWA_YIEM_type VWA YIEM 97.6 0.00095 2.1E-08 60.5 12.7 133 282-449 2-135 (152)
254 cd01475 vWA_Matrilin VWA_Matri 97.6 0.0005 1.1E-08 66.8 11.6 146 281-460 3-157 (224)
255 PLN02270 phospholipase D alpha 97.6 0.00056 1.2E-08 76.5 12.9 164 14-211 58-234 (808)
256 cd01460 vWA_midasin VWA_Midasi 97.5 0.0012 2.5E-08 65.8 12.8 141 280-449 60-205 (266)
257 cd01452 VWA_26S_proteasome_sub 97.5 0.0026 5.7E-08 60.0 14.4 166 283-487 6-176 (187)
258 PF00092 VWA: von Willebrand f 97.5 0.00084 1.8E-08 61.8 11.1 150 282-460 1-155 (178)
259 KOG1326 Membrane-associated pr 97.5 5.2E-05 1.1E-09 84.6 3.2 86 136-227 617-703 (1105)
260 PRK13685 hypothetical protein; 97.5 0.0029 6.3E-08 65.2 15.5 142 280-449 88-239 (326)
261 KOG1264 Phospholipase C [Lipid 97.4 0.00068 1.5E-08 74.3 9.6 92 136-230 1069-1162(1267)
262 PLN02228 Phosphoinositide phos 97.3 0.00033 7.1E-09 76.2 6.3 67 17-97 476-543 (567)
263 cd01481 vWA_collagen_alpha3-VI 97.3 0.0036 7.8E-08 57.9 11.9 146 282-461 2-156 (165)
264 KOG0169 Phosphoinositide-speci 97.3 0.0003 6.4E-09 77.3 5.1 68 16-97 658-726 (746)
265 KOG1264 Phospholipase C [Lipid 97.2 0.0011 2.3E-08 72.8 8.0 68 16-97 1103-1171(1267)
266 KOG1013 Synaptic vesicle prote 97.2 5.4E-05 1.2E-09 75.3 -1.6 111 118-230 79-192 (362)
267 cd01458 vWA_ku Ku70/Ku80 N-ter 97.1 0.015 3.2E-07 56.2 14.6 153 282-450 3-174 (218)
268 PF09967 DUF2201: VWA-like dom 97.1 0.0011 2.4E-08 58.6 6.1 109 283-445 1-111 (126)
269 TIGR03436 acidobact_VWFA VWFA- 96.9 0.016 3.5E-07 58.6 13.9 139 279-448 52-204 (296)
270 PRK13406 bchD magnesium chelat 96.9 0.017 3.7E-07 63.9 14.6 149 278-460 399-559 (584)
271 TIGR02442 Cob-chelat-sub cobal 96.8 0.022 4.9E-07 63.9 15.2 149 279-458 464-622 (633)
272 TIGR02031 BchD-ChlD magnesium 96.8 0.019 4.1E-07 63.8 14.3 149 277-459 404-571 (589)
273 KOG1327 Copine [Signal transdu 96.7 0.0039 8.4E-08 66.7 7.7 85 145-230 3-104 (529)
274 PLN02964 phosphatidylserine de 96.7 0.0043 9.3E-08 68.8 7.6 85 153-244 68-155 (644)
275 PLN02964 phosphatidylserine de 96.6 0.0014 3E-08 72.6 2.9 62 14-86 79-140 (644)
276 KOG2060 Rab3 effector RIM1 and 96.5 0.004 8.7E-08 63.3 5.2 110 131-243 268-380 (405)
277 cd08689 C2_fungal_Pkc1p C2 dom 96.4 0.0064 1.4E-07 51.5 5.5 56 14-86 34-89 (109)
278 PLN02352 phospholipase D epsil 96.2 0.042 9.2E-07 61.7 12.0 158 14-211 47-212 (758)
279 KOG1326 Membrane-associated pr 96.1 0.013 2.8E-07 66.1 7.4 70 16-97 239-317 (1105)
280 cd01455 vWA_F11C1-5a_type Von 96.1 0.071 1.5E-06 50.3 11.2 158 282-460 2-164 (191)
281 KOG1011 Neurotransmitter relea 95.8 0.057 1.2E-06 58.3 10.3 115 116-231 1105-1226(1283)
282 TIGR00868 hCaCC calcium-activa 95.6 0.21 4.5E-06 57.5 14.2 156 273-461 298-453 (863)
283 PRK10997 yieM hypothetical pro 95.6 0.21 4.5E-06 53.9 13.5 143 279-458 322-468 (487)
284 PLN02352 phospholipase D epsil 95.4 0.1 2.2E-06 58.7 10.8 77 154-245 37-115 (758)
285 KOG3837 Uncharacterized conser 94.5 0.06 1.3E-06 55.5 5.4 73 15-97 404-487 (523)
286 PF05762 VWA_CoxE: VWA domain 94.3 0.18 3.9E-06 48.9 8.2 119 279-435 56-176 (222)
287 KOG1031 Predicted Ca2+-depende 94.3 0.027 5.7E-07 60.1 2.4 59 16-85 37-98 (1169)
288 KOG0905 Phosphoinositide 3-kin 93.8 0.032 6.9E-07 64.1 2.1 73 14-97 1560-1635(1639)
289 cd08397 C2_PI3K_class_III C2 d 93.7 0.21 4.5E-06 46.0 6.9 76 151-228 28-107 (159)
290 cd08683 C2_C2cd3 C2 domain fou 92.0 0.37 8E-06 42.4 5.6 80 15-95 48-143 (143)
291 cd08684 C2A_Tac2-N C2 domain f 91.3 0.062 1.3E-06 43.9 0.1 57 16-85 36-94 (103)
292 TIGR01651 CobT cobaltochelatas 91.2 1.4 3.1E-05 48.2 10.3 154 277-449 389-568 (600)
293 cd08684 C2A_Tac2-N C2 domain f 90.8 0.55 1.2E-05 38.5 5.1 86 137-229 4-93 (103)
294 COG1240 ChlD Mg-chelatase subu 90.6 3.9 8.5E-05 40.2 11.7 157 271-458 68-234 (261)
295 COG2425 Uncharacterized protei 90.6 2.1 4.5E-05 45.6 10.6 133 277-445 269-405 (437)
296 cd08683 C2_C2cd3 C2 domain fou 89.3 1.4 3E-05 38.9 6.7 75 154-230 34-132 (143)
297 cd08398 C2_PI3K_class_I_alpha 89.2 2.7 5.8E-05 38.6 9.0 89 134-228 10-106 (158)
298 PF14429 DOCK-C2: C2 domain in 89.1 1.5 3.3E-05 41.1 7.6 75 12-95 56-134 (184)
299 PF00792 PI3K_C2: Phosphoinosi 88.5 2 4.3E-05 38.5 7.6 73 155-229 4-86 (142)
300 cd08380 C2_PI3K_like C2 domain 88.3 1.7 3.7E-05 39.6 7.1 75 152-228 27-107 (156)
301 KOG3837 Uncharacterized conser 87.9 0.91 2E-05 47.2 5.5 115 138-260 373-498 (523)
302 cd08399 C2_PI3K_class_I_gamma 87.8 3.3 7.1E-05 38.8 8.7 56 154-211 31-89 (178)
303 PF12416 DUF3668: Cep120 prote 87.7 3.5 7.5E-05 42.6 9.6 101 135-244 3-115 (340)
304 cd08693 C2_PI3K_class_I_beta_d 87.7 3.3 7.1E-05 38.6 8.7 89 136-228 12-120 (173)
305 cd08696 C2_Dock-C C2 domains f 85.3 3.7 8E-05 38.5 7.7 45 12-56 51-97 (179)
306 PF14429 DOCK-C2: C2 domain in 80.4 19 0.0004 33.7 10.5 60 168-227 57-120 (184)
307 KOG1265 Phospholipase C [Lipid 79.8 2.4 5.1E-05 48.1 4.7 89 134-230 705-796 (1189)
308 cd04012 C2A_PI3K_class_II C2 d 78.9 7.8 0.00017 35.9 7.3 91 136-228 12-119 (171)
309 cd08694 C2_Dock-A C2 domains f 77.6 10 0.00023 35.9 7.7 46 10-55 48-95 (196)
310 cd08695 C2_Dock-B C2 domains f 77.4 8.1 0.00017 36.5 6.9 43 13-55 51-95 (189)
311 KOG2353 L-type voltage-depende 77.0 22 0.00048 42.4 11.7 171 255-454 204-381 (1104)
312 cd08397 C2_PI3K_class_III C2 d 75.4 5.8 0.00013 36.4 5.3 55 17-82 49-106 (159)
313 cd08697 C2_Dock-D C2 domains f 74.4 13 0.00029 35.0 7.5 43 13-55 54-98 (185)
314 PF11775 CobT_C: Cobalamin bio 74.2 8.9 0.00019 37.0 6.3 149 279-448 11-187 (219)
315 PF00792 PI3K_C2: Phosphoinosi 72.2 17 0.00037 32.4 7.5 58 15-83 20-85 (142)
316 PF03731 Ku_N: Ku70/Ku80 N-ter 71.9 31 0.00067 33.0 9.8 154 283-447 2-173 (224)
317 cd08679 C2_DOCK180_related C2 71.2 21 0.00045 33.3 8.1 63 13-82 51-115 (178)
318 PF15627 CEP76-C2: CEP76 C2 do 70.2 21 0.00045 32.7 7.5 93 15-130 45-152 (156)
319 PF04056 Ssl1: Ssl1-like; Int 70.1 61 0.0013 30.8 10.9 133 308-458 12-149 (193)
320 COG3864 Uncharacterized protei 69.4 14 0.00031 37.3 6.7 123 271-449 249-375 (396)
321 smart00142 PI3K_C2 Phosphoinos 69.1 26 0.00056 29.3 7.5 57 153-211 32-92 (100)
322 cd08694 C2_Dock-A C2 domains f 62.7 99 0.0021 29.4 10.7 59 168-226 51-114 (196)
323 PF10358 NT-C2: N-terminal C2 61.2 1.1E+02 0.0025 26.7 11.8 70 17-97 40-120 (143)
324 cd08380 C2_PI3K_like C2 domain 61.1 15 0.00032 33.3 4.9 58 16-82 46-106 (156)
325 COG4245 TerY Uncharacterized p 59.3 41 0.00088 31.7 7.3 80 379-458 72-159 (207)
326 cd08695 C2_Dock-B C2 domains f 58.0 28 0.00061 32.9 6.2 58 169-226 52-112 (189)
327 KOG1265 Phospholipase C [Lipid 57.3 6.5 0.00014 44.8 2.1 55 16-85 739-796 (1189)
328 PF15627 CEP76-C2: CEP76 C2 do 56.8 1.6E+02 0.0035 27.0 11.0 103 151-261 30-146 (156)
329 cd08697 C2_Dock-D C2 domains f 56.1 1.5E+02 0.0033 27.9 10.7 60 168-227 54-123 (185)
330 COG4548 NorD Nitric oxide redu 55.0 26 0.00056 38.1 5.9 154 279-460 445-612 (637)
331 cd08687 C2_PKN-like C2 domain 54.7 35 0.00076 28.3 5.4 46 2-55 13-58 (98)
332 cd08679 C2_DOCK180_related C2 52.6 38 0.00082 31.5 6.2 57 170-227 53-115 (178)
333 cd08696 C2_Dock-C C2 domains f 52.2 75 0.0016 29.8 8.0 60 168-227 52-118 (179)
334 PF10358 NT-C2: N-terminal C2 49.7 1.8E+02 0.0039 25.4 13.9 53 179-231 48-107 (143)
335 PF15625 CC2D2AN-C2: CC2D2A N- 48.2 77 0.0017 29.2 7.4 65 2-84 41-107 (168)
336 COG4822 CbiK Cobalamin biosynt 48.2 45 0.00098 32.1 5.8 124 312-454 118-248 (265)
337 PF11618 DUF3250: Protein of u 47.0 1.3E+02 0.0029 25.5 8.1 63 16-91 12-81 (107)
338 COG5271 MDN1 AAA ATPase contai 45.6 1.4E+02 0.003 38.1 10.1 148 279-458 4391-4543(4600)
339 cd08693 C2_PI3K_class_I_beta_d 43.6 43 0.00094 31.1 5.0 67 16-82 45-119 (173)
340 cd08398 C2_PI3K_class_I_alpha 40.3 61 0.0013 29.7 5.3 57 18-82 46-105 (158)
341 PF07162 B9-C2: Ciliary basal 38.2 1E+02 0.0022 28.4 6.6 57 16-83 40-104 (168)
342 cd08399 C2_PI3K_class_I_gamma 35.6 70 0.0015 29.9 5.0 38 18-55 49-89 (178)
343 PF14924 DUF4497: Protein of u 34.8 1.2E+02 0.0025 25.9 6.0 55 199-260 28-99 (112)
344 smart00187 INB Integrin beta s 33.2 1.7E+02 0.0037 31.2 7.9 124 278-422 97-242 (423)
345 PF11618 DUF3250: Protein of u 30.4 1.5E+02 0.0032 25.3 5.8 60 171-232 12-77 (107)
346 COG4867 Uncharacterized protei 28.8 1.9E+02 0.004 30.8 7.1 129 279-448 462-611 (652)
347 COG3552 CoxE Protein containin 28.2 1.4E+02 0.003 31.2 6.0 118 281-436 219-339 (395)
348 PF12416 DUF3668: Cep120 prote 26.1 94 0.002 32.2 4.5 73 15-97 29-113 (340)
349 KOG2807 RNA polymerase II tran 25.5 3E+02 0.0064 28.3 7.6 147 273-450 53-205 (378)
350 PF02601 Exonuc_VII_L: Exonucl 25.3 3.6E+02 0.0077 27.4 8.7 90 359-454 21-123 (319)
351 KOG2737 Putative metallopeptid 25.2 56 0.0012 34.1 2.6 103 262-384 218-323 (492)
352 COG5618 Predicted periplasmic 24.3 67 0.0014 29.7 2.7 17 473-489 132-148 (206)
353 cd01468 trunk_domain trunk dom 23.5 6.7E+02 0.015 24.1 13.1 163 282-464 5-217 (239)
354 COG3060 MetJ Transcriptional r 23.4 64 0.0014 26.0 2.1 29 490-518 74-102 (105)
355 cd08687 C2_PKN-like C2 domain 23.3 2.6E+02 0.0056 23.4 5.6 63 153-228 9-72 (98)
356 cd04012 C2A_PI3K_class_II C2 d 23.2 1.1E+02 0.0024 28.1 4.1 54 27-82 62-118 (171)
357 TIGR00381 cdhD CO dehydrogenas 23.0 1.8E+02 0.0039 30.6 5.9 57 396-455 142-207 (389)
358 KOG0906 Phosphatidylinositol 3 22.4 99 0.0021 34.6 4.0 44 184-227 78-123 (843)
359 KOG2414 Putative Xaa-Pro amino 22.4 1.7E+02 0.0038 31.0 5.5 108 270-401 266-378 (488)
No 1
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-117 Score=914.95 Aligned_cols=481 Identities=49% Similarity=0.793 Sum_probs=445.2
Q ss_pred CCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEeccccccccc
Q 010107 9 RDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKN 88 (518)
Q Consensus 9 ~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~~~~ 88 (518)
+++.|.+++|||+|++.+||.|.++|.+.|+||.+|.|+|.+||.|+. ..++..+||+|+++|.|++++...+
T Consensus 35 ~~~~~~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~-------~~~l~~~dflg~~~c~l~~ivs~~~ 107 (529)
T KOG1327|consen 35 EDDVWEEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSR-------TPDLSSADFLGTAECTLSQIVSSSG 107 (529)
T ss_pred cccccccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCc-------cCCcchhcccceeeeehhhhhhhhh
Confidence 577899999999999999999999999999999999999999999974 2367889999999999999998765
Q ss_pred eeEEEeccCCcccccccccCCCCCCCCcccceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCce
Q 010107 89 RSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTH 168 (518)
Q Consensus 89 ~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~ 168 (518)
.+.-+-|+. + +....|+|++.+++....+..+.+.++|++|.++|++++||||..+++..+++++
T Consensus 108 ~~~~l~~~~-----------~----~~~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~ 172 (529)
T KOG1327|consen 108 LTGPLLLKP-----------G----KNAGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGST 172 (529)
T ss_pred hhhhhhccc-----------C----ccCCcccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCce
Confidence 444333332 1 2356899999999988778889999999999999999999999999999888999
Q ss_pred eeEeeeccccCCCCCceeeeEEeeecc--CCCCccEEEEEEeecCCCCCcceEEEEEechhhhhccCCCceEEeeccccc
Q 010107 169 IPVCKTEVLKNETKPTWKSVFLNIQQV--GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAA 246 (518)
Q Consensus 169 ~~~~kTevik~tlnP~W~ef~~~~~~l--~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~~~ 246 (518)
..+++||+++++++|.|.+|.++.+.+ .+.++++.++|||++..++|++||.+..++.++.. .+....+.+++++++
T Consensus 173 ~~~~~tEv~~n~l~p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~-~~~~~~~~~~~~~~~ 251 (529)
T KOG1327|consen 173 QMLYRTEVVKNTLNPQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE-PGSPNQIMLINPKKK 251 (529)
T ss_pred eeccccceeccCCCCcccccccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc-cCCcccccccChhhh
Confidence 999999999999999999999998888 45679999999999999999999999999999975 555667999999886
Q ss_pred CC-CCCccccceEEEEEeeehhhhhhhhhcccCceeeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhc
Q 010107 247 GN-NNHKILNSQLFVDKFSESVQYTFLDYLAGGFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVL 325 (518)
Q Consensus 247 ~k-~~~k~~~G~i~l~~~~~~~~~sFldyi~~g~~~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~ 325 (518)
.| +++++ +|++.+..|+....+||+|||+||++++|+||||||+|||+|++++|||||+|. ++|+|++||++||++|
T Consensus 252 ~~~k~~k~-~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vgIDfTaSNg~p~~~sSLHyi~p~-~~N~Y~~Ai~~vG~~l 329 (529)
T KOG1327|consen 252 AKKKSYKN-SGQLILDRFTSLDQYSFLDYIAGGEQLNFTVGIDFTASNGDPRNPSSLHYIDPH-QPNPYEQAIRSVGETL 329 (529)
T ss_pred hhhhcccc-cceEEehheeehhhhhHHHHHccCceeeeEEEEEEeccCCCCCCCCcceecCCC-CCCHHHHHHHHHhhhh
Confidence 44 46777 999999999999999999999999999999999999999999999999999996 8999999999999999
Q ss_pred ccccCCCCcceeeeccc-CCCCCceeEEecCCCCCCCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhc
Q 010107 326 QVYDSDKRFPAWGFGAR-PIDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLA 404 (518)
Q Consensus 326 ~~yd~d~~~~~~gFG~~-~~~~~~~~~f~l~~~~~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~ 404 (518)
++||+|++||+|||||+ |+++.+||||+||+++.||+|.|++||++||++++++|+|+|||+|||||++|+++|+++..
T Consensus 330 q~ydsdk~fpa~GFGakip~~~~vs~~f~ln~~~~~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~ 409 (529)
T KOG1327|consen 330 QDYDSDKLFPAFGFGAKIPPDGQVSHEFVLNFNPEDPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGN 409 (529)
T ss_pred cccCCCCccccccccccCCCCcccccceeecCCCCCCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhcc
Confidence 99999999999999999 78899999999999999999999999999999999999999999999999999999998754
Q ss_pred ccCCceEEEEEEeCCCcCCHHHHHHHHHHccCCCeEEEEEecCCCcchhhhhcccCCCcccccCCCCcccCceeeeeeCc
Q 010107 405 NHGQKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILDADKGERLESSTGRVASRDIVQFVPLK 484 (518)
Q Consensus 405 ~~~~~y~vlliltdG~i~d~~~t~~~i~~as~lPlsiiiVGvG~~~f~~m~~ld~d~~~~l~~~~g~~~~rD~v~Fv~~~ 484 (518)
+...|+||||||||.|+||++|++|||.||+|||||||||||++||+.|++||+|. .+|+++ ||.|+|||||||+|+
T Consensus 410 -~~~qY~VLlIitDG~vTdm~~T~~AIV~AS~lPlSIIiVGVGd~df~~M~~lD~d~-~~l~~~-gr~~~rD~vQFV~f~ 486 (529)
T KOG1327|consen 410 -TAGQYHVLLIITDGVVTDMKETRDAIVSASDLPLSIIIVGVGDADFDMMRELDGDD-PKLRSP-GRIAERDNVQFVPFR 486 (529)
T ss_pred -CCcceEEEEEEeCCccccHHHHHHHHHhhccCCeEEEEEEeCCCCHHHHHHhhcCC-cccccc-cccccccceEeecHH
Confidence 67899999999999999999999999999999999999999999999999999887 676665 999999999999999
Q ss_pred ccCCc-------HHHHHHHHHHHhHHHHHHHHHhCCCCCC
Q 010107 485 DVQNG-------EISVVQALLAELPSQFLTYMRTRDIQPS 517 (518)
Q Consensus 485 ~~~~~-------~~~l~~~~L~eiP~q~~~y~~~~~~~P~ 517 (518)
++++. .++||+++|+|||+|+++||+.+||.|.
T Consensus 487 ~~~~~~~~~~~~~~~lA~~vL~EIP~Q~~~y~~~~~~~p~ 526 (529)
T KOG1327|consen 487 DIMNGAENPSDKEAALALAVLAEIPQQYVQYMRLRGILPK 526 (529)
T ss_pred HHhhcCCcccchhHHHHHHHHHHhhHHHHHHHHhcCCCCC
Confidence 99874 7899999999999999999999999995
No 2
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=100.00 E-value=2e-79 Score=597.98 Aligned_cols=247 Identities=51% Similarity=0.753 Sum_probs=233.5
Q ss_pred CCCccccceEEEEEeeehhhhhhhhhcccCceeeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccc
Q 010107 249 NNHKILNSQLFVDKFSESVQYTFLDYLAGGFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVY 328 (518)
Q Consensus 249 ~~~k~~~G~i~l~~~~~~~~~sFldyi~~g~~~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~y 328 (518)
++|++ +|+|.+..+++ +|||||||+||++++|+||||||+|||+|+.|+||||+++. ++|+||+||++||+||++|
T Consensus 3 ~~~~~-~g~~~~~~~~~--~~tFldy~~~G~~~nl~vaIDfT~SNg~p~~~~SLHy~~~~-~~N~Yq~aI~~vg~il~~y 78 (254)
T cd01459 3 KVYKS-SGEVTLTDCRV--QPTFLDYRSAGLESNLIVAIDFTKSNGWPGEKRSLHYISPG-RLNPYQKAIRIVGEVLQPY 78 (254)
T ss_pred CCCCC-ceEEEEEEecc--CCCHHHHHhCCCeeeEEEEEEeCCCCCCCCCCCCcccCCCC-CccHHHHHHHHHHHHHHhc
Confidence 45667 99999999988 99999999999999999999999999999999999999987 7999999999999999999
Q ss_pred cCCCCcceeeecccC-CCCCceeEEecCCCCCCCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhcccC
Q 010107 329 DSDKRFPAWGFGARP-IDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHG 407 (518)
Q Consensus 329 d~d~~~~~~gFG~~~-~~~~~~~~f~l~~~~~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~~~ 407 (518)
|+|++||+|||||+. +.+.++|||| |++.+|+|.|++||++||++++++++|+|||+|+|||++|+++|++.. ..
T Consensus 79 D~D~~ip~~GFGa~~~~~~~v~~~f~--~~~~~p~~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~--~~ 154 (254)
T cd01459 79 DSDKLIPAFGFGAIVTKDQSVFSFFP--GYSESPECQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASN--SQ 154 (254)
T ss_pred CCCCceeeEeecccCCCCCccccccC--CCCCCCcccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhc--CC
Confidence 999999999999994 4566899999 899999999999999999999999999999999999999999999763 33
Q ss_pred CceEEEEEEeCCCcCCHHHHHHHHHHccCCCeEEEEEecCCCcchhhhhcccCCCcccccCCCCcccCceeeeeeCcccC
Q 010107 408 QKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILDADKGERLESSTGRVASRDIVQFVPLKDVQ 487 (518)
Q Consensus 408 ~~y~vlliltdG~i~d~~~t~~~i~~as~lPlsiiiVGvG~~~f~~m~~ld~d~~~~l~~~~g~~~~rD~v~Fv~~~~~~ 487 (518)
.+|+||||||||+|+||++|+++|++||++||||||||||+++|+.|++||+|+ + |++|+|+.+.|||||||+|+++.
T Consensus 155 ~~Y~VLLIiTDG~i~D~~~t~~aIv~AS~~PlSIiiVGVGd~~F~~M~~LD~d~-~-l~~~~~~~~~rDnvqFV~f~~~~ 232 (254)
T cd01459 155 SKYHILLIITDGEITDMNETIKAIVEASKYPLSIVIVGVGDGPFDAMERLDDDD-G-LESSDGRIATRDIVQFVPFTEFM 232 (254)
T ss_pred CceEEEEEECCCCcccHHHHHHHHHHHhcCCeEEEEEEeCCCChHHHHHhcCcc-c-cccccCCcceecceeeecchhhc
Confidence 479999999999999999999999999999999999999999999999999877 4 89999999999999999999999
Q ss_pred Cc----HHHHHHHHHHHhHHHH
Q 010107 488 NG----EISVVQALLAELPSQF 505 (518)
Q Consensus 488 ~~----~~~l~~~~L~eiP~q~ 505 (518)
.. +++||+++|+|||+|+
T Consensus 233 ~~~~~~~~~La~~~L~EiP~Q~ 254 (254)
T cd01459 233 SNAGNPEAALATAALAEIPSQL 254 (254)
T ss_pred ccccccHHHHHHHHHHhccccC
Confidence 66 7899999999999995
No 3
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=100.00 E-value=2.3e-53 Score=381.89 Aligned_cols=145 Identities=59% Similarity=0.988 Sum_probs=140.1
Q ss_pred CccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeeccc-CCCCCceeEEecCCCCCCCcccChHHHHHHHHhhhcc
Q 010107 301 SLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGAR-PIDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHN 379 (518)
Q Consensus 301 slH~~~~~~~~n~y~~ai~~i~~i~~~yd~d~~~~~~gFG~~-~~~~~~~~~f~l~~~~~~~~~~g~~~i~~~Y~~~~~~ 379 (518)
||||+++. ++|+||+||++||++|++||+|++||+|||||+ ++++.+||||||||++.||+|.|++||+++|++++++
T Consensus 1 SLH~~~~~-~~N~Y~~ai~~vg~il~~Yd~dk~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~ 79 (146)
T PF07002_consen 1 SLHYISPN-QPNPYQQAIRAVGEILQDYDSDKMIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPK 79 (146)
T ss_pred CcccCCCC-CCCHHHHHHHHHHHHHHhhccCCccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhh
Confidence 89999998 799999999999999999999999999999999 5678899999999999999999999999999999999
Q ss_pred ceecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcCCHHHHHHHHHHccCCCeEEEEEecC
Q 010107 380 VNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVG 447 (518)
Q Consensus 380 ~~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~lPlsiiiVGvG 447 (518)
|+|+|||+|+|||++|+++|++ ..+++++|+||||||||+|+||++|+++|++||++||||||||||
T Consensus 80 v~l~GPT~fapiI~~a~~~a~~-~~~~~~~Y~iLlIlTDG~i~D~~~T~~aIv~AS~~PlSIIiVGVG 146 (146)
T PF07002_consen 80 VQLSGPTNFAPIINHAAKIAKQ-SNQNGQQYFILLILTDGQITDMEETIDAIVEASKLPLSIIIVGVG 146 (146)
T ss_pred eEECCCccHHHHHHHHHHHHhh-hccCCceEEEEEEecccccccHHHHHHHHHHHccCCeEEEEEEeC
Confidence 9999999999999999999997 446789999999999999999999999999999999999999998
No 4
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=99.97 E-value=6.2e-30 Score=238.44 Aligned_cols=198 Identities=21% Similarity=0.301 Sum_probs=165.5
Q ss_pred eeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEecCCCCCC
Q 010107 281 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSY 360 (518)
Q Consensus 281 ~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~ 360 (518)
..+.+.||-|+| |.+.++.+..|++.+++..+..++|+|+.+++|.||.+.... .+
T Consensus 2 ArV~LVLD~SGS------------M~~~yk~G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~~~~~------------~~ 57 (200)
T PF10138_consen 2 ARVYLVLDISGS------------MRPLYKDGTVQRVVERILALAAQFDDDGEIDVWFFSTEFDRL------------PD 57 (200)
T ss_pred cEEEEEEeCCCC------------CchhhhCccHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCcC------------CC
Confidence 578999999997 666667789999999999999999999999999999983211 11
Q ss_pred CcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcCCHHHHHHHHHHccCCCeE
Q 010107 361 CEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLPLS 440 (518)
Q Consensus 361 ~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~lPls 440 (518)
-....++++++.....+..+...|.|+++|||+++++.+.... ....+..+|++|||+++|.+++.++|++||++||+
T Consensus 58 vt~~~~~~~v~~~~~~~~~~~~~G~t~y~~vm~~v~~~y~~~~--~~~~P~~VlFiTDG~~~~~~~~~~~i~~as~~pif 135 (200)
T PF10138_consen 58 VTLDNYEGYVDELHAGLPDWGRMGGTNYAPVMEDVLDHYFKRE--PSDAPALVLFITDGGPDDRRAIEKLIREASDEPIF 135 (200)
T ss_pred cCHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHhhcC--CCCCCeEEEEEecCCccchHHHHHHHHhccCCCee
Confidence 2345566777655555555566688999999999999888553 33457888999999999999999999999999999
Q ss_pred EEEEecCCCcchhhhhcccCCCcccccCCCCcccCceeeeeeCcccCCc-HHHHHHHHHHHhHHHHHHHHHhCCCC
Q 010107 441 ILIIGVGGADFKEMEILDADKGERLESSTGRVASRDIVQFVPLKDVQNG-EISVVQALLAELPSQFLTYMRTRDIQ 515 (518)
Q Consensus 441 iiiVGvG~~~f~~m~~ld~d~~~~l~~~~g~~~~rD~v~Fv~~~~~~~~-~~~l~~~~L~eiP~q~~~y~~~~~~~ 515 (518)
|+|||||+.+|+++++||... +| ..||+.|+.+.++... +++|++.||+|+|.|+.+ .+.+||.
T Consensus 136 wqFVgiG~~~f~fL~kLD~l~-gR---------~vDNa~Ff~~~d~~~lsD~eLy~~LL~Efp~Wl~~-ar~~gi~ 200 (200)
T PF10138_consen 136 WQFVGIGDSNFGFLEKLDDLA-GR---------VVDNAGFFAIDDIDELSDEELYDRLLAEFPDWLKA-ARAKGIL 200 (200)
T ss_pred EEEEEecCCcchHHHHhhccC-Cc---------ccCCcCeEecCCcccCCHHHHHHHHHHHHHHHHHH-HHHcCCC
Confidence 999999999999999999654 33 4599999999999755 899999999999999888 5888874
No 5
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.2e-22 Score=211.61 Aligned_cols=188 Identities=19% Similarity=0.307 Sum_probs=158.2
Q ss_pred EEEEeeeeeeCCCCCceeeEEEEEEEeCce--eEEEEEEEEecCCcccccccccCccCcceeEEEEEeccccccccceeE
Q 010107 14 VEVGRTEVVLNSLNPTWITKHIITYQFEVV--QTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSL 91 (518)
Q Consensus 14 ~ev~rTevi~~~lNP~f~~~f~~~~~fe~~--q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~~~~~~~ 91 (518)
..-.+|+|.++++||+|+|+|.+.+.+++. +.|.|.|||.|. ++++++||++.++|+.+.-......
T Consensus 201 ~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr-----------fsr~~~iGev~~~l~~~~~~~~~~~ 269 (421)
T KOG1028|consen 201 KGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR-----------FSRHDFIGEVILPLGEVDLLSTTLF 269 (421)
T ss_pred CCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC-----------cccccEEEEEEecCcccccccccee
Confidence 357899999999999999999998655543 499999999994 6799999999999999987777788
Q ss_pred EEeccCCcccccccccCCCCCCCCcccceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeE
Q 010107 92 TLDLVRREETITPITEESNPSNRPKHCGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPV 171 (518)
Q Consensus 92 ~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~ 171 (518)
|.+|... ... .....|+|.+++.|++..+.+.+.+++|++|+.++..+.+||||++++...+ +...+
T Consensus 270 w~~l~~~----------~~~--~~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~-~~~~k 336 (421)
T KOG1028|consen 270 WKDLQPS----------STD--SEELAGELLLSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGD-KRLSK 336 (421)
T ss_pred eeccccc----------cCC--cccccceEEEEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCC-ceeee
Confidence 9998651 000 0122389999999999989999999999999999999999999999998654 78889
Q ss_pred eeeccccCCCCCceee-eE--EeeeccCCCCccEEEEEEeecCCCCCcceEEEEEechh
Q 010107 172 CKTEVLKNETKPTWKS-VF--LNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLAD 227 (518)
Q Consensus 172 ~kTevik~tlnP~W~e-f~--~~~~~l~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~ 227 (518)
.||.+.++++||+||| |. ++...+. +..|.|+|||+|..+++++||.+.+....
T Consensus 337 kkT~~~~~~~npv~nesf~F~vp~~~l~--~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 337 KKTSVKKKTLNPVFNETFVFDVPPEQLA--EVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred eeeecccCCCCCcccccEEEeCCHHHhh--eeEEEEEEEEcccccccceeeEEEecCCC
Confidence 9999999999999999 43 3444443 46899999999999999999998887664
No 6
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.81 E-value=2.5e-19 Score=171.17 Aligned_cols=175 Identities=22% Similarity=0.192 Sum_probs=130.5
Q ss_pred eEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEecCCCCCCC
Q 010107 282 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYC 361 (518)
Q Consensus 282 ~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~~ 361 (518)
.++++||.|+|++.+..+.++| +.+.+++++.+++.++..||.|+...++.||.... .++++
T Consensus 4 dvv~~ID~SgSM~~~~~~~~~~------k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~------~~~~~------ 65 (199)
T cd01457 4 DYTLLIDKSGSMAEADEAKERS------RWEEAQESTRALARKCEEYDSDGITVYLFSGDFRR------YDNVN------ 65 (199)
T ss_pred CEEEEEECCCcCCCCCCCCCch------HHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCccc------cCCcC------
Confidence 5789999999998776555443 46999999999999999999999655555544311 12211
Q ss_pred cccChHHHHHHHHhhhccceecCCCChHHHHHHHHHH-HHhhhc-ccCCceEEEEEEeCCCcCCHHHHHHHHHHccCC--
Q 010107 362 EVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALI-AGQSLA-NHGQKYFVLLIITDGVVTDLQETKDALVKASDL-- 437 (518)
Q Consensus 362 ~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~-a~~~~~-~~~~~y~vlliltdG~i~d~~~t~~~i~~as~l-- 437 (518)
.+++.++|. .+.+.|+|++++.|+.+++. +..... +..+.+.+++|||||..+|.+++.++|++|++.
T Consensus 66 ----~~~v~~~~~----~~~p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d~~~~~~~i~~a~~~l~ 137 (199)
T cd01457 66 ----SSKVDQLFA----ENSPDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDDKDAVERVIIKASDELD 137 (199)
T ss_pred ----HHHHHHHHh----cCCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhhc
Confidence 455666553 45567999999999999853 332211 233458999999999999999999999999862
Q ss_pred ---CeEEEEEecCCC--cchhhhhcccCCCcccccCCCCcccCceeeeeeCcccCCc
Q 010107 438 ---PLSILIIGVGGA--DFKEMEILDADKGERLESSTGRVASRDIVQFVPLKDVQNG 489 (518)
Q Consensus 438 ---PlsiiiVGvG~~--~f~~m~~ld~d~~~~l~~~~g~~~~rD~v~Fv~~~~~~~~ 489 (518)
|+.|.|||||++ +|..|+.|| +. | ++..+.||||+||+|+++...
T Consensus 138 ~~~~i~i~~v~vG~~~~~~~~L~~ld-~~---~---~~~~~~~d~vd~~~~~~~~~~ 187 (199)
T cd01457 138 ADNELAISFLQIGRDPAATAFLKALD-DQ---L---QEVGAKFDIVDTVTWDDMERL 187 (199)
T ss_pred cccCceEEEEEeCCcHHHHHHHHHHh-HH---H---HhcCCcccceeeeeHHhhhcC
Confidence 788888888875 899999999 43 2 123368999999999998754
No 7
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.77 E-value=5.4e-18 Score=146.18 Aligned_cols=107 Identities=41% Similarity=0.696 Sum_probs=92.4
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceeeeEEeeecc--CCCCccEEEEEEeecC
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVFLNIQQV--GSKDSPLIIECFNFNS 211 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~ef~~~~~~l--~~~~~~L~veV~D~d~ 211 (518)
.++++++|++|+.+|.+|++|||+++++.++++++...++|+++++++||.|++|.++...+ ++..+.|.|+|||++.
T Consensus 2 ~~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 2 VVELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKPFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceEEEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 57889999999999999999999999987655567789999999999999999988877666 3346899999999999
Q ss_pred CCCCcceEEEEEechhhhhccCCCceEEeec
Q 010107 212 NGKHDLIGKVQKSLADLEKLHSSGQGQNLFL 242 (518)
Q Consensus 212 ~~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n 242 (518)
.+++++||++.+++.+|. .+..++++++|
T Consensus 82 ~~~d~~iG~~~~~l~~l~--~~~~~~~~~~~ 110 (110)
T cd04047 82 SGKHDLIGEFETTLDELL--KSSPLEFELIN 110 (110)
T ss_pred CCCCcEEEEEEEEHHHHh--cCCCceEEecC
Confidence 999999999999999996 34566777654
No 8
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.75 E-value=6.8e-18 Score=149.20 Aligned_cols=122 Identities=16% Similarity=0.256 Sum_probs=99.0
Q ss_pred cceeeeeceeeecCCceEEEEEeecCCCcCCCC-CCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeecc
Q 010107 118 CGKLTVHAEECINSKTTTELILRCSDLDCKDLF-SRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV 195 (518)
Q Consensus 118 ~G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~-g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l 195 (518)
+|+|.+++.|......+.+.+++|++|+++|.. |.+|||+++++.+. +.....+||+++++++||+||| |.+.+..-
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~-~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~ 79 (125)
T cd08393 1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPD-KSNRGKRKTSVKKKTLNPVFNETLRYKVERE 79 (125)
T ss_pred CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcC-CCccccccCccCcCCCCCccCceEEEECCHH
Confidence 599999999988878888899999999999976 89999999999854 3345578999999999999999 65554321
Q ss_pred CCCCccEEEEEEeecCCCCCcceEEEEEechhhhhccCCCceEEe
Q 010107 196 GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 240 (518)
Q Consensus 196 ~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l 240 (518)
.-....|.|+|||++..+++++||++.++|.++........|++|
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 112578999999999999999999999999999643333345544
No 9
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.73 E-value=1.6e-17 Score=143.79 Aligned_cols=104 Identities=15% Similarity=0.211 Sum_probs=88.1
Q ss_pred ceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEee--ecc
Q 010107 119 GKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNI--QQV 195 (518)
Q Consensus 119 G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~--~~l 195 (518)
++|++++.|.+..+.+.+.+++|++|+ ..|.+|||+++++.++++ ...++|+++++|+||+||| |.|.+ +.+
T Consensus 1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k--~~k~kT~v~rktlnPvfnE~f~F~v~~~~l 75 (118)
T cd08677 1 PKLHYSLSYDKQKAELHVNILEAENIS---VDAGCECYISGCVSVSEG--QKEAQTALKKLALHTQWEEELVFPLPEEES 75 (118)
T ss_pred CeEEEEEEEcCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcC--ccEEEcceecCCCCCccccEEEEeCCHHHh
Confidence 578999999999999999999999998 347799999999975432 3577999999999999999 44433 333
Q ss_pred CCCCccEEEEEEeecCCCCCcceEEEEEechhhh
Q 010107 196 GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLE 229 (518)
Q Consensus 196 ~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~ 229 (518)
.++.|.|.|||+|+.+++++||++.+++.++.
T Consensus 76 --~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~ 107 (118)
T cd08677 76 --LDGTLTLTLRCCDRFSRHSTLGELRLKLADVS 107 (118)
T ss_pred --CCcEEEEEEEeCCCCCCCceEEEEEEcccccc
Confidence 36889999999999999999999999999874
No 10
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.73 E-value=3.9e-17 Score=144.31 Aligned_cols=122 Identities=15% Similarity=0.281 Sum_probs=97.9
Q ss_pred cceeeeeceeeecCCceEEEEEeecCCCcCCC-CCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeecc
Q 010107 118 CGKLTVHAEECINSKTTTELILRCSDLDCKDL-FSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV 195 (518)
Q Consensus 118 ~G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~-~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l 195 (518)
.|+|.+++.|....+.+.+.+++|++|+.+|. .+.+||||++++.+. +.....+||+++++++||+||| |.+.+..-
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~-~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 79 (125)
T cd04029 1 SGEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPD-KSRQSKRKTSIKRNTTNPVYNETLKYSISHS 79 (125)
T ss_pred CcEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcC-CccccceEeeeeeCCCCCcccceEEEECCHH
Confidence 38999999998888888889999999998875 589999999999754 4345678999999999999999 55554321
Q ss_pred CCCCccEEEEEEeecCCCCCcceEEEEEechhhhhccCCCceEEe
Q 010107 196 GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 240 (518)
Q Consensus 196 ~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l 240 (518)
.-.+..|.|+|||++..+++++||++.+++.++........|++|
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 80 QLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred HhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 112568999999999999999999999999999753333345544
No 11
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.73 E-value=3.7e-17 Score=143.88 Aligned_cols=117 Identities=16% Similarity=0.237 Sum_probs=93.7
Q ss_pred ceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeecc-C
Q 010107 119 GKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV-G 196 (518)
Q Consensus 119 G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l-~ 196 (518)
|+|.+++.|. .+.+.+.+++|++|+.+| .+.+||||++++.++ .+....+||+++++++||.||| |.+..... .
T Consensus 2 G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~-~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~ 77 (122)
T cd08381 2 GQVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPD-PQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVED 77 (122)
T ss_pred CeEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeC-CccCCceeCCccCCCCCCCcccEEEEecCChHH
Confidence 8999999987 466888889999999999 899999999999864 3345678999999999999999 65543111 1
Q ss_pred CCCccEEEEEEeecCCCCCcceEEEEEechhhhhccCCCceEE
Q 010107 197 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQN 239 (518)
Q Consensus 197 ~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~ 239 (518)
-....|.|+|||++..+++++||++.++|.++........||+
T Consensus 78 l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~ 120 (122)
T cd08381 78 LQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYP 120 (122)
T ss_pred hCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEE
Confidence 1357899999999999999999999999999974322234444
No 12
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.71 E-value=9.3e-17 Score=145.03 Aligned_cols=122 Identities=15% Similarity=0.203 Sum_probs=99.0
Q ss_pred cccceeeeeceeeecCCceEEEEEeecCCCcCC-CCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeee
Q 010107 116 KHCGKLTVHAEECINSKTTTELILRCSDLDCKD-LFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQ 193 (518)
Q Consensus 116 ~~~G~I~i~~e~~~~~~~li~~~i~a~~L~~~d-~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~ 193 (518)
...|+|.+++.+ ..+.+.+.+++|+||+.++ ..|.+||||++++.++ ++....+||+++++|+||+||| |.+.+.
T Consensus 15 ~~~G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~-~~~~~k~KT~v~kktlnPvfNE~F~f~v~ 91 (146)
T cd04028 15 PSMGDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEG-KKCIAKKKTKIARKTLDPLYQQQLVFDVS 91 (146)
T ss_pred CCcceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECC-CccccceeceecCCCCCCccCCeEEEEEc
Confidence 457999999988 3567888889999999874 6789999999999853 4455689999999999999999 666665
Q ss_pred ccCCCCccEEEEEE-eecCCCCCcceEEEEEechhhhhccCCCceEEeecc
Q 010107 194 QVGSKDSPLIIECF-NFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLS 243 (518)
Q Consensus 194 ~l~~~~~~L~veV~-D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~ 243 (518)
+ .++.|.|+|| |++..+++++||++.++|+++........||.|.+.
T Consensus 92 -l--~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 92 -P--TGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred -C--CCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 3 3688999999 688888899999999999998543333456776653
No 13
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.71 E-value=1e-16 Score=141.29 Aligned_cols=120 Identities=22% Similarity=0.365 Sum_probs=97.8
Q ss_pred cceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccC
Q 010107 118 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 196 (518)
Q Consensus 118 ~G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~ 196 (518)
+|+|.++++|....+.+.+.+++|++|+.+|..+.+|||+++++.++. ..++||+++++++||+|+| |.+.+..-.
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~---~~~~kT~v~~~t~nP~wne~f~f~i~~~~ 78 (124)
T cd08385 2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK---KKKFETKVHRKTLNPVFNETFTFKVPYSE 78 (124)
T ss_pred ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCC---CCceecccCcCCCCCceeeeEEEeCCHHH
Confidence 699999999988888888889999999999999999999999997542 2478999999999999999 665543211
Q ss_pred CCCccEEEEEEeecCCCCCcceEEEEEechhhhhccCCCceEEe
Q 010107 197 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 240 (518)
Q Consensus 197 ~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l 240 (518)
-.+..|.|+|||++..+++++||++.+++.++........|++|
T Consensus 79 l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 79 LGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred hCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 12568999999999999999999999999998543333344443
No 14
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.69 E-value=1.4e-16 Score=140.40 Aligned_cols=111 Identities=14% Similarity=0.220 Sum_probs=94.1
Q ss_pred eeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCC
Q 010107 120 KLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSK 198 (518)
Q Consensus 120 ~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~ 198 (518)
+|.+++.|.+..+.+.+.+++|+||+.++..+.+|||+++++.++.++....+||+++++++||+||| |.|++..-.-.
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~ 81 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY 81 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence 68889999988888999999999999999888999999999997543324588999999999999999 66554321113
Q ss_pred CccEEEEEEeecCCCCCcceEEEEEechhhhh
Q 010107 199 DSPLIIECFNFNSNGKHDLIGKVQKSLADLEK 230 (518)
Q Consensus 199 ~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~ 230 (518)
++.|.|.|||++..+++++||++.++|.++..
T Consensus 82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~ 113 (124)
T cd08680 82 QKTLQVDVCSVGPDQQEECLGGAQISLADFES 113 (124)
T ss_pred cCEEEEEEEeCCCCCceeEEEEEEEEhhhccC
Confidence 68999999999999999999999999999954
No 15
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.69 E-value=2.8e-16 Score=139.40 Aligned_cols=111 Identities=16% Similarity=0.243 Sum_probs=93.9
Q ss_pred ceeeeeceeeecCCceEEEEEeecCCCcCCCC-CCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccC
Q 010107 119 GKLTVHAEECINSKTTTELILRCSDLDCKDLF-SRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 196 (518)
Q Consensus 119 G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~-g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~ 196 (518)
|+|.+++.|....+.+.+.+++|++|+.+|.. |.+||||++++.+.. .....+||+++++++||+||| |.+.+..-.
T Consensus 2 G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~-~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~ 80 (128)
T cd08392 2 GEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDK-SHNSKRKTAVKKGTVNPVFNETLKYVVEADL 80 (128)
T ss_pred cEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCC-cccceeecccccCCCCCccceEEEEEcCHHH
Confidence 89999999998888888999999999999975 999999999998653 234578999999999999999 665543211
Q ss_pred CCCccEEEEEEeecCCCCCcceEEEEEechhhhh
Q 010107 197 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEK 230 (518)
Q Consensus 197 ~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~ 230 (518)
-.++.|.|.|||++..+++++||++.++|.++..
T Consensus 81 l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~ 114 (128)
T cd08392 81 LSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDF 114 (128)
T ss_pred hCCcEEEEEEEeCCCCcCcceEEEEEEEcCCccc
Confidence 1257899999999998899999999999999954
No 16
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.68 E-value=3.7e-16 Score=138.17 Aligned_cols=122 Identities=19% Similarity=0.228 Sum_probs=98.7
Q ss_pred cceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccC
Q 010107 118 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 196 (518)
Q Consensus 118 ~G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~ 196 (518)
.|+|.+++.|....+.+.+.+++|++|+.+|.++.+|||+++++.+. +.....+||+++++++||+|+| |.+.+..-.
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~-~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~ 80 (127)
T cd04030 2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPD-KSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE 80 (127)
T ss_pred CeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcC-CCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence 59999999999888888888999999999999999999999999753 4456789999999999999999 655543211
Q ss_pred CCCccEEEEEEeecCC--CCCcceEEEEEechhhhhccCCCceEEe
Q 010107 197 SKDSPLIIECFNFNSN--GKHDLIGKVQKSLADLEKLHSSGQGQNL 240 (518)
Q Consensus 197 ~~~~~L~veV~D~d~~--~~~d~IG~~~i~l~~L~~~~~~~~~~~l 240 (518)
-....|.|.|||++.. +++++||++.+++.++........+|.|
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 1246899999999875 6899999999999998643333345544
No 17
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.68 E-value=3.1e-16 Score=138.18 Aligned_cols=120 Identities=13% Similarity=0.246 Sum_probs=96.5
Q ss_pred cceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccC
Q 010107 118 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 196 (518)
Q Consensus 118 ~G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~ 196 (518)
+|+|++++.+....+.+.+.+++|++|+.+|..|.+|||+++++.+. + ..++||+++++++||.|+| |.+.+..-.
T Consensus 2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~-~--~~~~kT~v~~~t~~P~wne~f~f~v~~~~ 78 (124)
T cd08387 2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPD-R--SNTKQSKIHKKTLNPEFDESFVFEVPPQE 78 (124)
T ss_pred CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecC-C--CCcEeCceEcCCCCCCcccEEEEeCCHHH
Confidence 69999999998887778888899999999999999999999999643 2 2468999999999999999 555443211
Q ss_pred CCCccEEEEEEeecCCCCCcceEEEEEechhhhhccCCCceEEe
Q 010107 197 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 240 (518)
Q Consensus 197 ~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l 240 (518)
-.++.|.|+|||++..+++++||++.++++++........|+.|
T Consensus 79 l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 79 LPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred hCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence 12568999999999999999999999999999643333334443
No 18
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.68 E-value=3.9e-16 Score=139.47 Aligned_cols=113 Identities=22% Similarity=0.277 Sum_probs=96.0
Q ss_pred cceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCC-ceeeEeeeccccCCCCCceee-eEEeeecc
Q 010107 118 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESG-THIPVCKTEVLKNETKPTWKS-VFLNIQQV 195 (518)
Q Consensus 118 ~G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~-~~~~~~kTevik~tlnP~W~e-f~~~~~~l 195 (518)
+|+|.+++++....+.+.+.+++|++|+.++.++.+|||+++++.+... .....+||+++++|+||+|+| |.+.+...
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 81 (133)
T cd04009 2 YGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPE 81 (133)
T ss_pred ceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechh
Confidence 6999999999888788888899999999999999999999999874321 124689999999999999998 76665432
Q ss_pred --CCCCccEEEEEEeecCCCCCcceEEEEEechhhhh
Q 010107 196 --GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEK 230 (518)
Q Consensus 196 --~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~ 230 (518)
...+..|.|+|||++..+++++||++.++|.++..
T Consensus 82 ~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 82 QCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred hcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 22367899999999999999999999999999964
No 19
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.67 E-value=1.3e-16 Score=142.88 Aligned_cols=121 Identities=17% Similarity=0.262 Sum_probs=98.0
Q ss_pred ceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCC
Q 010107 119 GKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGS 197 (518)
Q Consensus 119 G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~ 197 (518)
|+|.++++|.+....+.+.+++|++|+.+|..|.+||||++++.++ ++.....||+++++++||+||| |.|.+..-.-
T Consensus 2 G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~-~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l 80 (136)
T cd08406 2 GEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQD-GRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVL 80 (136)
T ss_pred cEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeC-CccccccCCccccCCCCCeeceeEEEECCHHHh
Confidence 8999999999888889999999999999999999999999999864 5556678999999999999999 6555432211
Q ss_pred CCccEEEEEEeecCCCCCcceEEEEEechhhhhccCCCceEEeec
Q 010107 198 KDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFL 242 (518)
Q Consensus 198 ~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n 242 (518)
.+..|.|+|||+|..+++++||++.+..... ..+...+.+++.
T Consensus 81 ~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~--g~~~~hW~~ml~ 123 (136)
T cd08406 81 QDLSLRVTVAESTEDGKTPNVGHVIIGPAAS--GMGLSHWNQMLA 123 (136)
T ss_pred CCcEEEEEEEeCCCCCCCCeeEEEEECCCCC--ChhHHHHHHHHH
Confidence 3678999999999999999999999987643 233334444544
No 20
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.67 E-value=4.6e-16 Score=137.22 Aligned_cols=120 Identities=19% Similarity=0.327 Sum_probs=96.1
Q ss_pred cceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeecc-
Q 010107 118 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV- 195 (518)
Q Consensus 118 ~G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l- 195 (518)
+|+|++++.|......+.+.+++|++|+.+|.++.+|||+++++.+.++ ..++|+++++++||.|+| |.+.....
T Consensus 2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~---~~~kT~v~~~t~~P~Wne~f~f~~~~~~ 78 (125)
T cd08386 2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKK---HKLETKVKRKNLNPHWNETFLFEGFPYE 78 (125)
T ss_pred ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCC---cceeeeeecCCCCCccceeEEEcccCHH
Confidence 6999999999888888888899999999999999999999999864322 368999999999999999 55442111
Q ss_pred CCCCccEEEEEEeecCCCCCcceEEEEEechhhhhccCCCceEEe
Q 010107 196 GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 240 (518)
Q Consensus 196 ~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l 240 (518)
.-....|.|+|||++..+++++||++.+++.++........++.|
T Consensus 79 ~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l 123 (125)
T cd08386 79 KLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123 (125)
T ss_pred HhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEec
Confidence 112567999999999999999999999999999643333334443
No 21
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.67 E-value=5.5e-16 Score=136.59 Aligned_cols=121 Identities=18% Similarity=0.295 Sum_probs=97.2
Q ss_pred cceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeecc-
Q 010107 118 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV- 195 (518)
Q Consensus 118 ~G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l- 195 (518)
.|+|.+++.+....+.+.+.+++|++|+.++.++.+|||+++++.+. +....++||+++++++||+|++ |.+.....
T Consensus 2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~-~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 80 (125)
T cd04031 2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPD-RSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRE 80 (125)
T ss_pred cEEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccC-CCccccccccccCCCCCCccccEEEEcccCHH
Confidence 58999999998877888888999999999999999999999999753 3345688999999999999998 55543221
Q ss_pred CCCCccEEEEEEeecCCCCCcceEEEEEechhhhhccCCCceEEe
Q 010107 196 GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 240 (518)
Q Consensus 196 ~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l 240 (518)
.-....|.|+|||++..+++++||++.++|.+.. ..+...||+|
T Consensus 81 ~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L 124 (125)
T cd04031 81 TLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPL 124 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEEC
Confidence 1135789999999999889999999999999842 3344455554
No 22
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.67 E-value=9.3e-16 Score=134.97 Aligned_cols=119 Identities=24% Similarity=0.327 Sum_probs=93.2
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCC
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 212 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~ 212 (518)
+.+.+++|++|+.+|.++.+|||++++..+ ..++|+++++++||.|++ |.+.+.. .....|.|+|||++..
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~------~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~~l~~~v~d~~~~ 73 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNG------QTLETSVVKKSCYPRWNEVFEFELME--GADSPLSVEVWDWDLV 73 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECC------EEEeceeecCCCCCccCcEEEEEcCC--CCCCEEEEEEEECCCC
Confidence 456679999999999999999999999742 358999999999999999 6665543 2357899999999999
Q ss_pred CCCcceEEEEEechhhhhccCCCceEEeecccccCCCCCccccceEEEE
Q 010107 213 GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 261 (518)
Q Consensus 213 ~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~~~~k~~~k~~~G~i~l~ 261 (518)
+++++||.+.+++.++........++.|.....+.++..++ .|.|.|.
T Consensus 74 ~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~-~G~l~~~ 121 (123)
T cd04025 74 SKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGN-LGSLRLK 121 (123)
T ss_pred CCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCc-eEEEEEE
Confidence 99999999999999997544445567776543332234455 9999874
No 23
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.66 E-value=5.2e-16 Score=139.17 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=98.5
Q ss_pred cceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccC
Q 010107 118 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 196 (518)
Q Consensus 118 ~G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~ 196 (518)
+|+|.++++|....+.+.+.+++|++|+.+|.+|.+|||+++++.+. ++....+||+++++++||.|+| |.|.+..-.
T Consensus 1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~-~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~ 79 (136)
T cd08404 1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYG-KKRISKKKTHVKKCTLNPVFNESFVFDIPSEE 79 (136)
T ss_pred CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcC-CceeeeEcCccccCCCCCccCceEEEECCHHH
Confidence 59999999998888888888999999999999999999999998643 5556689999999999999999 555543211
Q ss_pred CCCccEEEEEEeecCCCCCcceEEEEEechhhhhccCCCceEEeec
Q 010107 197 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFL 242 (518)
Q Consensus 197 ~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n 242 (518)
.....|.|+|||++..+++++||++.+++... ..+...++.+..
T Consensus 80 ~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~~--~~~~~~w~~l~~ 123 (136)
T cd08404 80 LEDISVEFLVLDSDRVTKNEVIGRLVLGPKAS--GSGGHHWKEVCN 123 (136)
T ss_pred hCCCEEEEEEEECCCCCCCccEEEEEECCcCC--CchHHHHHHHHh
Confidence 13567999999999999999999999999883 333334455543
No 24
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.66 E-value=5.4e-16 Score=164.09 Aligned_cols=228 Identities=18% Similarity=0.196 Sum_probs=164.5
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||.|.+.. .+|.||.++.++|.|.|.|.|.+... ..-+.|.|-|||.| +++|+.||.+.++=
T Consensus 29 yC~v~lD~-----E~v~RT~tv~ksL~PF~gEe~~~~iP-~~F~~l~fYv~D~d------------~~~D~~IGKvai~r 90 (800)
T KOG2059|consen 29 YCTVNLDQ-----EEVCRTATVEKSLCPFFGEEFYFEIP-RTFRYLSFYVWDRD------------LKRDDIIGKVAIKR 90 (800)
T ss_pred ceEEeecc-----hhhhhhhhhhhhcCCccccceEEecC-cceeeEEEEEeccc------------cccccccceeeeeH
Confidence 57777643 37999999999999999998777654 33468999999999 36899999999999
Q ss_pred cccccccceeEEEeccCCcccccccccCCCCCCCCcccceeeeecee--eecCCceEEEEEeecCCCcCCCCCCCCcEEE
Q 010107 81 SQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEE--CINSKTTTELILRCSDLDCKDLFSRNDPFLV 158 (518)
Q Consensus 81 ~~l~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~--~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~ 158 (518)
.+|...+|..-|+.|.. .+. .....|+|++.++. ......+...++.++++-+.+ ++.+|||++
T Consensus 91 e~l~~~~~~d~W~~L~~-----------VD~--dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~-~~~~dp~~~ 156 (800)
T KOG2059|consen 91 EDLHMYPGKDTWFSLQP-----------VDP--DSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPII-NGQCDPFAR 156 (800)
T ss_pred HHHhhCCCCccceeccc-----------cCC--ChhhceeEEEEEEeccccCCCcchhhhhhhcccCcee-CCCCCcceE
Confidence 99999999999999965 121 22668999887654 334455666677777776654 455999999
Q ss_pred EEEEecCCceeeEeeeccccCCCCCceee-eEEeeecc-------------CCCCccEEEEEEe-ecCCCCCcceEEEEE
Q 010107 159 ISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV-------------GSKDSPLIIECFN-FNSNGKHDLIGKVQK 223 (518)
Q Consensus 159 i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l-------------~~~~~~L~veV~D-~d~~~~~d~IG~~~i 223 (518)
+...+. ......+|.++++|.+|.|+| +.+.+..- ++..-.|++++|+ ++...+++|+|++.+
T Consensus 157 v~~~g~--~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv 234 (800)
T KOG2059|consen 157 VTLCGP--SKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRV 234 (800)
T ss_pred Eeeccc--chhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEe
Confidence 988643 233458999999999999999 44433210 0113468899999 666677999999999
Q ss_pred echhhhhccCCCceEEeecccccCCC-CCccccceEEEEEe
Q 010107 224 SLADLEKLHSSGQGQNLFLSTAAGNN-NHKILNSQLFVDKF 263 (518)
Q Consensus 224 ~l~~L~~~~~~~~~~~l~n~~~~~k~-~~k~~~G~i~l~~~ 263 (518)
++..+.+..+...||.|.- ...+.+ +.....|.++++-+
T Consensus 235 ~v~~~~~~s~p~~W~~Lqp-~~~g~~~~~~~~lGslrl~v~ 274 (800)
T KOG2059|consen 235 PVDVLRQKSSPAAWYYLQP-RPNGEKSSDGGDLGSLRLNVT 274 (800)
T ss_pred ehhhhhhccCccceEEEec-CCCcccCCCCCCccceeeeEE
Confidence 9999985444455666543 322222 11123788888654
No 25
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.66 E-value=8.6e-16 Score=134.97 Aligned_cols=111 Identities=18% Similarity=0.332 Sum_probs=92.2
Q ss_pred ceeeeeceeeecCCceEEEEEeecCCCcCC-CCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccC
Q 010107 119 GKLTVHAEECINSKTTTELILRCSDLDCKD-LFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 196 (518)
Q Consensus 119 G~I~i~~e~~~~~~~li~~~i~a~~L~~~d-~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~ 196 (518)
|+|.+++.|....+.+.+.+++|++|+.++ ..+.+|||+++++.+. +.....+||+++++++||+|++ |.+.+..-.
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~-~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~ 79 (123)
T cd08521 1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPD-KSKQSKRKTSVKKNTTNPVFNETLKYHISKSQ 79 (123)
T ss_pred CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecC-CCcCceeeccccCCCCCCcccceEEEeCCHHH
Confidence 789999999887788888899999999999 7889999999998753 3334578999999999999999 555443211
Q ss_pred CCCccEEEEEEeecCCCCCcceEEEEEechhhhh
Q 010107 197 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEK 230 (518)
Q Consensus 197 ~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~ 230 (518)
-..+.|.|+|||++..+++++||++.+++.++..
T Consensus 80 l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~ 113 (123)
T cd08521 80 LETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDL 113 (123)
T ss_pred hCCCEEEEEEEeCCCCcCCceeeEEEEecccccc
Confidence 1256899999999999999999999999999953
No 26
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.65 E-value=1.3e-15 Score=133.54 Aligned_cols=105 Identities=25% Similarity=0.441 Sum_probs=86.3
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecC-CceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecC
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVES-GTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 211 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~-~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~ 211 (518)
.+.++++|++|+++|.+|++|||+++++.+.. +.+..++||+++++|+||+|++ |.+.... +....|.|+|||+|.
T Consensus 2 ~~~~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~--~~~~~l~~~V~d~d~ 79 (120)
T cd04048 2 KVELSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYF--EEVQKLRFEVYDVDS 79 (120)
T ss_pred EEEEEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEe--EeeeEEEEEEEEecC
Confidence 46788999999999999999999999998654 3567889999999999999999 5554321 235689999999997
Q ss_pred ----CCCCcceEEEEEechhhhhccCCCceEEe
Q 010107 212 ----NGKHDLIGKVQKSLADLEKLHSSGQGQNL 240 (518)
Q Consensus 212 ----~~~~d~IG~~~i~l~~L~~~~~~~~~~~l 240 (518)
.+++++||++.+++.+|....+...++.|
T Consensus 80 ~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l 112 (120)
T cd04048 80 KSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPL 112 (120)
T ss_pred CcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence 78999999999999999764444445555
No 27
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.65 E-value=8.7e-16 Score=141.77 Aligned_cols=112 Identities=15% Similarity=0.208 Sum_probs=90.6
Q ss_pred cceeeeeceeee------------cCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCce
Q 010107 118 CGKLTVHAEECI------------NSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTW 185 (518)
Q Consensus 118 ~G~I~i~~e~~~------------~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W 185 (518)
+|+|.+++.|.+ ..+.+.+.+++|++|+.+|..+.+||||++++.+. +....++||+++++++||.|
T Consensus 1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~-~~~~~~~kT~vi~~t~nP~W 79 (162)
T cd04020 1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPD-KSKKSKQKTPVVKKSVNPVW 79 (162)
T ss_pred CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcC-CCCCcceeCCccCCCCCCCC
Confidence 478888888876 33567778899999999999999999999998643 33456899999999999999
Q ss_pred ee-eEEeeeccC-CCCccEEEEEEeecCCCCCcceEEEEEechhhhh
Q 010107 186 KS-VFLNIQQVG-SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEK 230 (518)
Q Consensus 186 ~e-f~~~~~~l~-~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~ 230 (518)
|+ |.+...... -.+..|.|+|||++..+++++||++.+++.++..
T Consensus 80 nE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~ 126 (162)
T cd04020 80 NHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKS 126 (162)
T ss_pred CCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCcccc
Confidence 99 554422111 1246899999999999999999999999999864
No 28
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.65 E-value=2e-15 Score=132.57 Aligned_cols=114 Identities=18% Similarity=0.247 Sum_probs=90.4
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCC
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 212 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~ 212 (518)
+.+.+++|++|+.+|.+|.+|||++++..+ ..+++|+++++++||.|+| |.+.+.. ....|.|+|||++..
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~-----~~~~kT~~~~~t~nP~Wne~f~f~v~~---~~~~l~~~v~D~d~~ 73 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGG-----KTVYKSKTIYKNLNPVWDEKFTLPIED---VTQPLYIKVFDYDRG 73 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECC-----EEEEEeeeccCCCCCccceeEEEEecC---CCCeEEEEEEeCCCC
Confidence 456678999999999999999999998742 3579999999999999998 6666543 357899999999999
Q ss_pred CCCcceEEEEEechhhhhccCCCceEEeecccccCCCCCccccceEEEE
Q 010107 213 GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 261 (518)
Q Consensus 213 ~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~~~~k~~~k~~~G~i~l~ 261 (518)
+++++||.+.+++.++........+++|.+.+. .+. .|+|.|.
T Consensus 74 ~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~-----~~~-~G~l~l~ 116 (121)
T cd04042 74 LTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNS-----DED-LGYISLV 116 (121)
T ss_pred CCCcceEEEEEEHHHcCCCCCeEEEEECCCCCC-----ccC-ceEEEEE
Confidence 999999999999999974333334566655331 123 8999984
No 29
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.64 E-value=1.7e-16 Score=159.66 Aligned_cols=125 Identities=20% Similarity=0.340 Sum_probs=102.0
Q ss_pred CCcccceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEee
Q 010107 114 RPKHCGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNI 192 (518)
Q Consensus 114 ~~~~~G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~ 192 (518)
++..+|+|.+.++. ..+.+.+.+..|+||.+||.+|.||||+++.+.+ |.+-...+||++++.+|||+||| |.+.+
T Consensus 164 htE~RGrl~l~~~~--~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliP-D~~~~sKqKTkTik~~LNP~wNEtftf~L 240 (683)
T KOG0696|consen 164 HTERRGRLYLEAHI--KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIP-DPKNESKQKTKTIKATLNPVWNETFTFKL 240 (683)
T ss_pred chhhcceEEEEEEe--cCceEEEEehhhccccccCCCCCCCcceeEEecc-CCcchhhhhhhhhhhhcCccccceeEEec
Confidence 45779999888765 3455666678999999999999999999999986 45556789999999999999999 54443
Q ss_pred eccCCCCccEEEEEEeecCCCCCcceEEEEEechhhhhccCCCceEEeecc
Q 010107 193 QQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLS 243 (518)
Q Consensus 193 ~~l~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~ 243 (518)
.- +|.++.|.|||||||+.+++||+|...+.+++|... ....||.|+++
T Consensus 241 kp-~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~K~-p~~GWyKlLsq 289 (683)
T KOG0696|consen 241 KP-SDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQKA-PVDGWYKLLSQ 289 (683)
T ss_pred cc-ccccceeEEEEecccccccccccceecccHHHHhhc-chhhHHHHhhh
Confidence 32 678999999999999999999999999999999753 23345666554
No 30
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.64 E-value=1.5e-15 Score=132.97 Aligned_cols=107 Identities=15% Similarity=0.244 Sum_probs=86.8
Q ss_pred ceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCC
Q 010107 119 GKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGS 197 (518)
Q Consensus 119 G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~ 197 (518)
|+|.+++++ ..+.+.+.+++|++|++++ .|.+||||++++.+. ......+||+++++++||.||| |.+.+.. .+
T Consensus 1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~-~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~-~~ 75 (119)
T cd08685 1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPD-KEVRFRQKTSTVPDSANPLFHETFSFDVNE-RD 75 (119)
T ss_pred CEEEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeC-CCCcceEeCccccCCCCCccccEEEEEcCh-HH
Confidence 678888877 4566778889999999999 889999999999864 3345678999999999999999 6665432 12
Q ss_pred CCccEEEEEEeecCCC-CCcceEEEEEechhhhh
Q 010107 198 KDSPLIIECFNFNSNG-KHDLIGKVQKSLADLEK 230 (518)
Q Consensus 198 ~~~~L~veV~D~d~~~-~~d~IG~~~i~l~~L~~ 230 (518)
....|.|+|||++..+ ++++||++.+++.++..
T Consensus 76 ~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~ 109 (119)
T cd08685 76 YQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVN 109 (119)
T ss_pred hCCEEEEEEECCCCCcCCCEEEEEEEecHHHhcc
Confidence 2456899999999875 46899999999999963
No 31
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.64 E-value=9e-16 Score=137.56 Aligned_cols=106 Identities=14% Similarity=0.283 Sum_probs=91.2
Q ss_pred ceeeeeceeeecCCceEEEEEeecCCCcCCC--CCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeee--
Q 010107 119 GKLTVHAEECINSKTTTELILRCSDLDCKDL--FSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQ-- 193 (518)
Q Consensus 119 G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~--~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~-- 193 (518)
|+|.+++.|.+..+.+.+.+++|+||+.+|. .+.+||||++++.+. +++....||+++++++||+||| |.|.+.
T Consensus 2 Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~-~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~ 80 (138)
T cd08407 2 GEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQ-NAKLKKKQTKRAKHKINPVWNEMIMFELPSE 80 (138)
T ss_pred CEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcC-CcccceeccceeeCCCCCccccEEEEECCHH
Confidence 8999999999998999999999999999983 355999999999854 5567789999999999999999 554443
Q ss_pred ccCCCCccEEEEEEeecCCCCCcceEEEEEechh
Q 010107 194 QVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLAD 227 (518)
Q Consensus 194 ~l~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~ 227 (518)
.+. +..|.|+|||+|..+++++||++.+++..
T Consensus 81 ~L~--~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 81 LLA--ASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred HhC--ccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 232 57899999999999999999999999865
No 32
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.63 E-value=2.2e-15 Score=132.41 Aligned_cols=110 Identities=15% Similarity=0.313 Sum_probs=92.2
Q ss_pred ceeeeeceeeecCCceEEEEEeecCCCcCC-CCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccC
Q 010107 119 GKLTVHAEECINSKTTTELILRCSDLDCKD-LFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 196 (518)
Q Consensus 119 G~I~i~~e~~~~~~~li~~~i~a~~L~~~d-~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~ 196 (518)
|+|.++++|....+.+.+.+++|++|+.++ .++.+|||+++++.+++ ...++|+++++++||+|+| |.+.+....
T Consensus 1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~---~~~~~T~v~~~~~~P~wne~f~f~i~~~~ 77 (123)
T cd08390 1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDE---RRSLQSKVKRKTQNPNFDETFVFQVSFKE 77 (123)
T ss_pred CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCC---CCceEeeeEcCCCCCccceEEEEEcCHHH
Confidence 789999999888888888899999999998 78899999999987543 2367999999999999999 555543221
Q ss_pred CCCccEEEEEEeecCCCCCcceEEEEEechhhhhc
Q 010107 197 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKL 231 (518)
Q Consensus 197 ~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~ 231 (518)
...+.|.|+|||++..+++++||++.++|.++...
T Consensus 78 l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~ 112 (123)
T cd08390 78 LQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLV 112 (123)
T ss_pred hcccEEEEEEEECCcCCCCcEEEEEEEeccceecC
Confidence 12468999999999988899999999999999753
No 33
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.63 E-value=2.3e-15 Score=133.59 Aligned_cols=110 Identities=24% Similarity=0.337 Sum_probs=91.3
Q ss_pred cceeeeeceeeecCCceEEEEEeecCCCcCCCC-CCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEe-eec
Q 010107 118 CGKLTVHAEECINSKTTTELILRCSDLDCKDLF-SRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLN-IQQ 194 (518)
Q Consensus 118 ~G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~-g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~-~~~ 194 (518)
+|+|.+++.|......+.+.+++|++|+.++.. +.+||||++++.+.. ....||+++++++||.||| |.|. +..
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~---~~~~kT~v~~~t~nP~wnE~F~f~~~~~ 78 (128)
T cd08388 2 LGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEK---EHKVKTRVLRKTRNPVYDETFTFYGIPY 78 (128)
T ss_pred CeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCc---CceeeccEEcCCCCCceeeEEEEcccCH
Confidence 699999999988888888889999999999986 899999999987542 2467999999999999999 5542 211
Q ss_pred cCCCCccEEEEEEeecCCCCCcceEEEEEechhhhh
Q 010107 195 VGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEK 230 (518)
Q Consensus 195 l~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~ 230 (518)
-.-.+..|.|+|||+|..+++++||++.++|.++.-
T Consensus 79 ~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~ 114 (128)
T cd08388 79 NQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADL 114 (128)
T ss_pred HHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCC
Confidence 111245799999999999999999999999999853
No 34
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.63 E-value=3.5e-15 Score=131.95 Aligned_cols=117 Identities=21% Similarity=0.317 Sum_probs=88.9
Q ss_pred EEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeecc---CCCCccEEEEEEeec
Q 010107 135 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV---GSKDSPLIIECFNFN 210 (518)
Q Consensus 135 i~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l---~~~~~~L~veV~D~d 210 (518)
.+.+++|++|+.+|..|.+|||+++++.+ ..+||+++++++||+||| |.|.+... ......|.|+|||++
T Consensus 2 ~V~V~~A~~L~~~d~~g~~dpYv~v~l~~------~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~ 75 (126)
T cd08682 2 QVTVLQARGLLCKGKSGTNDAYVIIQLGK------EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRN 75 (126)
T ss_pred EEEEEECcCCcCCCCCcCCCceEEEEECC------eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcc
Confidence 35678999999999999999999999852 368999999999999999 66555432 013578999999999
Q ss_pred CCCCCcceEEEEEechhhhhccC--CCceEEeecccccCCCCCccccceEEEE
Q 010107 211 SNGKHDLIGKVQKSLADLEKLHS--SGQGQNLFLSTAAGNNNHKILNSQLFVD 261 (518)
Q Consensus 211 ~~~~~d~IG~~~i~l~~L~~~~~--~~~~~~l~n~~~~~k~~~k~~~G~i~l~ 261 (518)
..+++++||++.+++.++....+ ...+++|...+. +. .+. +|+|.+.
T Consensus 76 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~--~~-~~~-~Gei~l~ 124 (126)
T cd08682 76 LLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPG--KD-DKE-RGEIEVD 124 (126)
T ss_pred ccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCC--CC-ccc-cceEEEE
Confidence 98899999999999999963222 235667654321 11 122 8999874
No 35
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.62 E-value=2.4e-15 Score=132.77 Aligned_cols=109 Identities=19% Similarity=0.261 Sum_probs=92.6
Q ss_pred cceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEe-eecc
Q 010107 118 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLN-IQQV 195 (518)
Q Consensus 118 ~G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~-~~~l 195 (518)
.|+|.+++.|......+.+.+++|+||+.++..+.+|||+++++.+.. ...+||+++++ +||+||| |.++ +..-
T Consensus 2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~---~~~~kTkv~~~-~nP~fnE~F~f~~i~~~ 77 (124)
T cd08389 2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSK---KQRAKTKVQRG-PNPVFNETFTFSRVEPE 77 (124)
T ss_pred CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCC---cceeecccccC-CCCcccCEEEECCCCHH
Confidence 699999999999888999999999999999999999999999887542 35789999888 9999999 6655 2211
Q ss_pred CCCCccEEEEEEeecCCCCCcceEEEEEechhhhh
Q 010107 196 GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEK 230 (518)
Q Consensus 196 ~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~ 230 (518)
.-.++.|.|+|||++..+++++||++.++|+++..
T Consensus 78 ~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~ 112 (124)
T cd08389 78 ELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNL 112 (124)
T ss_pred HhccCEEEEEEEECCCcccCceEEEEEEeccccCC
Confidence 11367899999999999999999999999999954
No 36
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.62 E-value=1.3e-15 Score=136.53 Aligned_cols=122 Identities=19% Similarity=0.264 Sum_probs=97.0
Q ss_pred cceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccC
Q 010107 118 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 196 (518)
Q Consensus 118 ~G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~ 196 (518)
.|+|.+++.|....+.+.+.+++|++|+.+|..|.+|||+++++.+ +++....++|+++++++||.|++ |.+.+..-.
T Consensus 1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~-~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~ 79 (136)
T cd08402 1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQ-NGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQ 79 (136)
T ss_pred CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEE-CCcccceeeccceeCCCCCcccceEEEECCHHH
Confidence 4899999999988888888899999999999999999999999874 34455688999999999999999 555543211
Q ss_pred CCCccEEEEEEeecCCCCCcceEEEEEechhhhhccCCCceEEeec
Q 010107 197 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFL 242 (518)
Q Consensus 197 ~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n 242 (518)
-....|.|+|||++..+++++||++.+++... ..+...+++++.
T Consensus 80 l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 80 IQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred hCCCEEEEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 11357999999999999999999999999764 222234555554
No 37
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.61 E-value=1.5e-15 Score=135.52 Aligned_cols=120 Identities=19% Similarity=0.238 Sum_probs=95.5
Q ss_pred eeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCC
Q 010107 120 KLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSK 198 (518)
Q Consensus 120 ~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~ 198 (518)
+|.+++.|....+.+.+.+++|++|+++|..|.+|||+++++.+. +.+...+||+++++++||.||+ |.+.+..-.-.
T Consensus 1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~-~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~ 79 (133)
T cd08384 1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPD-AGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLA 79 (133)
T ss_pred CEEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcC-CCccCCceeeeEeccCCCCcccEEEEECCHHHhC
Confidence 367888888888888888999999999999999999999999753 4445679999999999999999 55554321112
Q ss_pred CccEEEEEEeecCCCCCcceEEEEEechhhhhccCCCceEEeec
Q 010107 199 DSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFL 242 (518)
Q Consensus 199 ~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n 242 (518)
...|.|+|||++..+++++||++.+++.+. ......++++++
T Consensus 80 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~--~~~~~~W~~~l~ 121 (133)
T cd08384 80 KKTLEITVWDKDIGKSNDYIGGLQLGINAK--GERLRHWLDCLK 121 (133)
T ss_pred CCEEEEEEEeCCCCCCccEEEEEEEecCCC--CchHHHHHHHHh
Confidence 568999999999988999999999999863 223334566655
No 38
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.61 E-value=4.5e-15 Score=133.40 Aligned_cols=110 Identities=14% Similarity=0.245 Sum_probs=94.7
Q ss_pred ceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCC
Q 010107 119 GKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGS 197 (518)
Q Consensus 119 G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~ 197 (518)
|+|.+++.|....+.+.+.+++|+||+.++..|.+||||++++.+++++....+||+++++++||+||| |.|.+..-.-
T Consensus 2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l 81 (138)
T cd08408 2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQL 81 (138)
T ss_pred CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHh
Confidence 688999999888888999999999999999999999999999987666556678999999999999999 6665543222
Q ss_pred CCccEEEEEEeecCCCCCcceEEEEEechhh
Q 010107 198 KDSPLIIECFNFNSNGKHDLIGKVQKSLADL 228 (518)
Q Consensus 198 ~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L 228 (518)
.+..|.|+|||++..+++++||++.+++...
T Consensus 82 ~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 82 SEVTLMFSVYNKRKMKRKEMIGWFSLGLNSS 112 (138)
T ss_pred CccEEEEEEEECCCCCCCcEEEEEEECCcCC
Confidence 3678999999999999999999999988754
No 39
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.61 E-value=1.7e-15 Score=135.37 Aligned_cols=108 Identities=22% Similarity=0.379 Sum_probs=90.4
Q ss_pred ceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCC
Q 010107 119 GKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGS 197 (518)
Q Consensus 119 G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~ 197 (518)
|+|.+++.|.+..+.+.+.+++|++|+++|.+|.+|||+++++.+ ++.+...++|+++++++||.|++ |.|.+..-.-
T Consensus 1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~-~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~ 79 (134)
T cd08403 1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMC-EGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENV 79 (134)
T ss_pred CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEe-CCcccceecCCcccCCCCCcccceEEEECCHHHh
Confidence 789999999888888888899999999999999999999999874 35456789999999999999999 5554432111
Q ss_pred CCccEEEEEEeecCCCCCcceEEEEEechh
Q 010107 198 KDSPLIIECFNFNSNGKHDLIGKVQKSLAD 227 (518)
Q Consensus 198 ~~~~L~veV~D~d~~~~~d~IG~~~i~l~~ 227 (518)
....|.|+|||++..+++++||++.+++..
T Consensus 80 ~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~ 109 (134)
T cd08403 80 DNVSLIIAVVDYDRVGHNELIGVCRVGPNA 109 (134)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEECCCC
Confidence 235799999999999999999999999873
No 40
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.61 E-value=1.1e-14 Score=127.53 Aligned_cols=113 Identities=13% Similarity=0.146 Sum_probs=85.8
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccC-CCCCceee-eEEeeeccCCCCccEEEEEEeecC
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKN-ETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 211 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~-tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~ 211 (518)
+.+.+++|++|++.+ +|++||||++.+.. ..+||+++++ ++||+||| |.|.+.. ....|.|+|||+|.
T Consensus 4 L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~------~~~kT~v~~~~~~nP~WNe~F~f~v~~---~~~~l~~~V~d~d~ 73 (121)
T cd04016 4 LSITVVQAKLVKNYG-LTRMDPYCRIRVGH------AVYETPTAYNGAKNPRWNKTIQCTLPE---GVDSIYIEIFDERA 73 (121)
T ss_pred EEEEEEEccCCCcCC-CCCCCceEEEEECC------EEEEeEEccCCCCCCccCeEEEEEecC---CCcEEEEEEEeCCC
Confidence 455678999998888 89999999999852 3569999876 79999999 7666532 24679999999999
Q ss_pred CCCCcceEEEEEech-hhhhccCCCceEEeecccccCCCCCccccceEEEEE
Q 010107 212 NGKHDLIGKVQKSLA-DLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVDK 262 (518)
Q Consensus 212 ~~~~d~IG~~~i~l~-~L~~~~~~~~~~~l~n~~~~~k~~~k~~~G~i~l~~ 262 (518)
.+++++||.+.+++. .+........+++|...+ ++ ++ .|.|+|.-
T Consensus 74 ~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~--~~---~~-~g~i~l~l 119 (121)
T cd04016 74 FTMDERIAWTHITIPESVFNGETLDDWYSLSGKQ--GE---DK-EGMINLVF 119 (121)
T ss_pred CcCCceEEEEEEECchhccCCCCccccEeCcCcc--CC---CC-ceEEEEEE
Confidence 999999999999996 565433344567775422 21 22 89999854
No 41
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.60 E-value=4.2e-15 Score=133.23 Aligned_cols=110 Identities=20% Similarity=0.303 Sum_probs=92.2
Q ss_pred cceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccC
Q 010107 118 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 196 (518)
Q Consensus 118 ~G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~ 196 (518)
+|+|.+++.|....+.+.+.+++|++|+.++.+|.+|||+++++.+. +.....+||+++++++||.||+ |.|.+..-.
T Consensus 1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~-~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~ 79 (136)
T cd08405 1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYK-DKRVEKKKTVIKKRTLNPVFNESFIFNIPLER 79 (136)
T ss_pred CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeC-CCccccccCcceeCCCCCcccceEEEeCCHHH
Confidence 58999999998888888899999999999999999999999998643 3345678999999999999999 555432111
Q ss_pred CCCccEEEEEEeecCCCCCcceEEEEEechhh
Q 010107 197 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADL 228 (518)
Q Consensus 197 ~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L 228 (518)
-.+..|.|+|||++..+++++||++.+++.+.
T Consensus 80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred hCCCEEEEEEEECCCCCCCcEeEEEEECCccC
Confidence 12568999999999999999999999999876
No 42
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.60 E-value=6e-15 Score=129.02 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=77.7
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEec-CCceeeEeeeccccCCCCCceee-eEEeeecc-CCCCccEEEEEEeec
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVE-SGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV-GSKDSPLIIECFNFN 210 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~-~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l-~~~~~~L~veV~D~d 210 (518)
+.+.+++|++|+.++. |.+|||+++++.+. .+.....++|+++++++||+||| |.|.+... ......|.|.|||+|
T Consensus 2 L~V~Vi~A~~L~~~d~-g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 2 VTVKVVAANDLKWQTT-GMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred EEEEEEECcCCCcccC-CCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 4567799999999884 99999999998631 12344578999999999999999 66665422 223567999999999
Q ss_pred CCCCCcceEEEEEechhhhh
Q 010107 211 SNGKHDLIGKVQKSLADLEK 230 (518)
Q Consensus 211 ~~~~~d~IG~~~i~l~~L~~ 230 (518)
..+++++||++.+++.++..
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~ 100 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQ 100 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcC
Confidence 88889999999999999975
No 43
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.58 E-value=2.6e-14 Score=127.39 Aligned_cols=120 Identities=23% Similarity=0.393 Sum_probs=90.8
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEec-CCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecC
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVE-SGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 211 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~-~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~ 211 (518)
+.+.+++|++|+.+|..|.+|||+++++.+. .+.....++|+++++++||.||+ |.+.+.. ....|.|+|||++.
T Consensus 2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~---~~~~l~~~v~d~~~ 78 (133)
T cd04033 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNP---REHRLLFEVFDENR 78 (133)
T ss_pred EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcC---CCCEEEEEEEECCC
Confidence 3455789999999999999999999998754 23344578999999999999999 6665532 25679999999999
Q ss_pred CCCCcceEEEEEechhhhhccCC------CceEEeecccccCCCCCccccceEEEE
Q 010107 212 NGKHDLIGKVQKSLADLEKLHSS------GQGQNLFLSTAAGNNNHKILNSQLFVD 261 (518)
Q Consensus 212 ~~~~d~IG~~~i~l~~L~~~~~~------~~~~~l~n~~~~~k~~~k~~~G~i~l~ 261 (518)
.+++++||++.+++.++...... ..+|.|.....++ +. .|+|.+.
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~----~~-~G~l~~~ 129 (133)
T cd04033 79 LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS----RV-KGHLRLY 129 (133)
T ss_pred CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCC----cc-eeEEEEE
Confidence 99999999999999999753211 2456654322111 23 8999884
No 44
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.58 E-value=2e-14 Score=125.39 Aligned_cols=111 Identities=21% Similarity=0.328 Sum_probs=86.2
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccC-CCCCceee-eEEeeeccCCCCccEEEEEEeecC
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKN-ETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 211 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~-tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~ 211 (518)
+.+.+++|++|+++|.++++|||+++++.+ ..++|+++++ ++||.|++ |.+.+.. +..+.|.|+|||++.
T Consensus 3 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~------~~~kT~~~~~~~~nP~Wne~f~f~v~~--~~~~~l~i~v~d~~~ 74 (118)
T cd08681 3 LVVVVLKARNLPNKRKLDKQDPYCVLRIGG------VTKKTKTDFRGGQHPEWDEELRFEITE--DKKPILKVAVFDDDK 74 (118)
T ss_pred EEEEEEEccCCCCCCcCCCCCceEEEEECC------CccccccccCCCCCCccCceEEEEecC--CCCCEEEEEEEeCCC
Confidence 456679999999999999999999999753 3688998765 79999998 5555432 345789999999998
Q ss_pred CCCCcceEEEEEechhhhhccCCCceEEeecccccCCCCCccccceEEEE
Q 010107 212 NGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 261 (518)
Q Consensus 212 ~~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~~~~k~~~k~~~G~i~l~ 261 (518)
.+ +++||++.+++.++........+++|... + +. +|.|.|.
T Consensus 75 ~~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~---~----~~-~G~i~l~ 115 (118)
T cd08681 75 RK-PDLIGDTEVDLSPALKEGEFDDWYELTLK---G----RY-AGEVYLE 115 (118)
T ss_pred CC-CcceEEEEEecHHHhhcCCCCCcEEeccC---C----cE-eeEEEEE
Confidence 76 89999999999998654344556666432 1 12 8999884
No 45
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.58 E-value=1.7e-14 Score=127.81 Aligned_cols=117 Identities=14% Similarity=0.174 Sum_probs=87.5
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeecc-CCCCccEEEEEEeecC
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV-GSKDSPLIIECFNFNS 211 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l-~~~~~~L~veV~D~d~ 211 (518)
+.+.+++|++|+.+|..|.+|||++++..+ ..+||+++++++||.||+ |.+.+... ......|.|+|||++.
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~------~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~ 75 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDG------QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR 75 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECC------EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC
Confidence 456679999999999999999999998753 357999999999999999 66555422 1124679999999998
Q ss_pred CC-CCcceEEEEEechhhhh-ccCCCceEEeecccccCCCCCccccceEEEE
Q 010107 212 NG-KHDLIGKVQKSLADLEK-LHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 261 (518)
Q Consensus 212 ~~-~~d~IG~~~i~l~~L~~-~~~~~~~~~l~n~~~~~k~~~k~~~G~i~l~ 261 (518)
.+ ++++||++.+++.++.. ......++.|..+.+ .+ +. +|+|.|.
T Consensus 76 ~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~---~~-~~-~G~l~l~ 122 (127)
T cd04022 76 SGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGL---FS-RV-RGEIGLK 122 (127)
T ss_pred CcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCC---CC-Cc-cEEEEEE
Confidence 86 78999999999999962 122234566643221 11 22 8999884
No 46
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.58 E-value=2e-14 Score=125.49 Aligned_cols=112 Identities=17% Similarity=0.322 Sum_probs=88.9
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCC
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 212 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~ 212 (518)
+.+.+++|++|+.++.++.+|||++++... ..++|+++++++||.|++ |.+.+.. ..+.|.|+|||++..
T Consensus 3 l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~------~~~~T~~~~~t~nP~W~e~f~~~~~~---~~~~l~~~v~d~~~~ 73 (119)
T cd08377 3 LQVKVIRASGLAAADIGGKSDPFCVLELVN------ARLQTHTIYKTLNPEWNKIFTFPIKD---IHDVLEVTVYDEDKD 73 (119)
T ss_pred EEEEEEeeeCCCCCCCCCCCCcEEEEEECC------EeeecceecCCcCCccCcEEEEEecC---cCCEEEEEEEECCCC
Confidence 345578999999999999999999998752 247999999999999998 6666543 357899999999988
Q ss_pred CCCcceEEEEEechhhhhccCCCceEEeecccccCCCCCccccceEEEE
Q 010107 213 GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 261 (518)
Q Consensus 213 ~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~~~~k~~~k~~~G~i~l~ 261 (518)
+++++||++.+++.++.. +...++.|..+....+ . .|+|.+.
T Consensus 74 ~~~~~iG~~~~~l~~~~~--~~~~~~~l~~~~~~~~----~-~G~i~l~ 115 (119)
T cd08377 74 KKPEFLGKVAIPLLSIKN--GERKWYALKDKKLRTR----A-KGSILLE 115 (119)
T ss_pred CCCceeeEEEEEHHHCCC--CCceEEECcccCCCCc----e-eeEEEEE
Confidence 899999999999999953 4456677765432222 2 8999884
No 47
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.58 E-value=1.3e-14 Score=126.85 Aligned_cols=111 Identities=20% Similarity=0.218 Sum_probs=84.8
Q ss_pred EEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCCC
Q 010107 135 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNG 213 (518)
Q Consensus 135 i~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~~ 213 (518)
.+.+++|++|++.+.++++|||+++++.+. ....+||+++++++||+||+ |.+.+.. +....|.|+|||++..
T Consensus 3 ~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~---~~~~~kT~vv~~t~nP~Wne~f~f~i~~--~~~~~l~v~v~d~d~~- 76 (119)
T cd04036 3 TVRVLRATNITKGDLLSTPDCYVELWLPTA---SDEKKRTKTIKNSINPVWNETFEFRIQS--QVKNVLELTVMDEDYV- 76 (119)
T ss_pred EEEEEEeeCCCccCCCCCCCcEEEEEEcCC---CCccCccceecCCCCCccceEEEEEeCc--ccCCEEEEEEEECCCC-
Confidence 456789999999999999999999998532 13478999999999999998 6665542 2356799999999988
Q ss_pred CCcceEEEEEechhhhhccCCCceEEeecccccCCCCCccccceEEEE
Q 010107 214 KHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 261 (518)
Q Consensus 214 ~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~~~~k~~~k~~~G~i~l~ 261 (518)
++++||++.+++.++........+++|.. + . +|.+.+.
T Consensus 77 ~~~~iG~~~~~l~~l~~g~~~~~~~~L~~-~--------~-~g~l~~~ 114 (119)
T cd04036 77 MDDHLGTVLFDVSKLKLGEKVRVTFSLNP-Q--------G-KEELEVE 114 (119)
T ss_pred CCcccEEEEEEHHHCCCCCcEEEEEECCC-C--------C-CceEEEE
Confidence 89999999999999964322233444422 1 1 6888774
No 48
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.58 E-value=2e-14 Score=126.83 Aligned_cols=114 Identities=21% Similarity=0.235 Sum_probs=87.6
Q ss_pred eEEEEEeecC---CCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEee
Q 010107 134 TTELILRCSD---LDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNF 209 (518)
Q Consensus 134 li~~~i~a~~---L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~ 209 (518)
+.+.+++|++ |+.+|..|.+||||++...+ ...||+++++++||+||| |.|.+.. ....|.|+|||+
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~------~~~rTk~~~~~~nP~WnE~f~f~v~~---~~~~l~v~V~d~ 72 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP------KWVRTRTVEDSSNPRWNEQYTWPVYD---PCTVLTVGVFDN 72 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECC------EEeEcCcccCCCCCcceeEEEEEecC---CCCEEEEEEEEC
Confidence 3456789999 89999999999999998742 367999999999999999 6666543 345899999999
Q ss_pred cCCC------CCcceEEEEEechhhhhccCCCceEEeecccccCCCCCccccceEEE
Q 010107 210 NSNG------KHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFV 260 (518)
Q Consensus 210 d~~~------~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~~~~k~~~k~~~G~i~l 260 (518)
+..+ ++++||++.+++.++........+|+|...+.++ -+. .|.|..
T Consensus 73 d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~---~~~-~g~l~~ 125 (126)
T cd08379 73 SQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSG---VKK-MGELEC 125 (126)
T ss_pred CCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCC---ccC-CcEEEe
Confidence 8863 8999999999999996533334578887644221 122 787764
No 49
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.58 E-value=1.3e-14 Score=130.00 Aligned_cols=109 Identities=18% Similarity=0.280 Sum_probs=88.4
Q ss_pred ceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCC
Q 010107 119 GKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGS 197 (518)
Q Consensus 119 G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~ 197 (518)
|+|.+++.|.+..+.+.+.+++|++|+.+|.+|.+|||+++++.+ +++....++|+++++|+||.||| |.|.+..-.-
T Consensus 1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~-~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l 79 (135)
T cd08410 1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVH-GLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEEL 79 (135)
T ss_pred CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEc-CCcccceEcCccccCCCCCccceeEEEeCCHHHh
Confidence 789999999888777888889999999999999999999999853 33345678999999999999999 5555421111
Q ss_pred CCccEEEEEEeecCCCCCcceEEEEEechhh
Q 010107 198 KDSPLIIECFNFNSNGKHDLIGKVQKSLADL 228 (518)
Q Consensus 198 ~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L 228 (518)
.+..|.|+|||++..+++++||++.++....
T Consensus 80 ~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~ 110 (135)
T cd08410 80 ENVSLVFTVYGHNVKSSNDFIGRIVIGQYSS 110 (135)
T ss_pred CCCEEEEEEEeCCCCCCCcEEEEEEEcCccC
Confidence 1457999999999999999999998765443
No 50
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.57 E-value=2.5e-14 Score=127.28 Aligned_cols=122 Identities=18% Similarity=0.308 Sum_probs=98.2
Q ss_pred cceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccC
Q 010107 118 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 196 (518)
Q Consensus 118 ~G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~ 196 (518)
+|+|.+++++.. ..+.+.+++|++|+..+..+.+|||+++...+. +.....++|++++++.+|.|++ |.+.+.. +
T Consensus 1 ~g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~-~~~~~~~rT~v~~~~~~P~wne~f~~~~~~-~ 76 (131)
T cd04026 1 RGRIYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPD-PKNETKQKTKTIKKTLNPVWNETFTFDLKP-A 76 (131)
T ss_pred CcEEEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcC-CCCCceecceeecCCCCCCccceEEEeCCc-h
Confidence 589999987754 556667899999999998899999999998643 3345689999999999999999 6655432 2
Q ss_pred CCCccEEEEEEeecCCCCCcceEEEEEechhhhhccCCCceEEeeccc
Q 010107 197 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLST 244 (518)
Q Consensus 197 ~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~ 244 (518)
+..+.|.|+|||++..+++++||++.+++.++... ....+|+|++++
T Consensus 77 ~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~ 123 (131)
T cd04026 77 DKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQE 123 (131)
T ss_pred hcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcc
Confidence 24578999999999888999999999999999743 445678887754
No 51
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.56 E-value=1.9e-14 Score=126.60 Aligned_cols=111 Identities=14% Similarity=0.193 Sum_probs=91.1
Q ss_pred cceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeecc-
Q 010107 118 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV- 195 (518)
Q Consensus 118 ~G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l- 195 (518)
.|+|.+++.|......+.+.+++|++|++.+.++.+|||+++++.+. +.+...++|+++++++||.|++ |.+.....
T Consensus 1 ~G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~ 79 (123)
T cd04035 1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPG-ASKATKLRTKTVHKTRNPEFNETLTYYGITEE 79 (123)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecC-CCCCCceeeeeecCCCCCCccceEEEcCCCHH
Confidence 38999999998887788888899999999999999999999998643 3345689999999999999999 44421111
Q ss_pred CCCCccEEEEEEeecCCCCCcceEEEEEechhhhh
Q 010107 196 GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEK 230 (518)
Q Consensus 196 ~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~ 230 (518)
...+..|.|+|||++.. ++++||++.+++.+|..
T Consensus 80 ~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~ 113 (123)
T cd04035 80 DIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKP 113 (123)
T ss_pred HhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCC
Confidence 11246899999999987 78999999999999964
No 52
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.56 E-value=9.5e-15 Score=131.19 Aligned_cols=121 Identities=15% Similarity=0.236 Sum_probs=95.9
Q ss_pred cceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeee--c
Q 010107 118 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQ--Q 194 (518)
Q Consensus 118 ~G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~--~ 194 (518)
.|+|.+++.|.+..+.+.+.+++|+||+..+ .+.+|||+++++.+. ++....+||+++++++||+||| |.|.+. .
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~-~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~ 78 (137)
T cd08409 1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIH-NKVVKTKKTEVVDGAASPSFNESFSFKVTSRQ 78 (137)
T ss_pred CcEEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEEC-CEEeeeeecccEeCCCCCcccceEEEECCHHH
Confidence 4899999999988888899999999999999 888999999998854 4445678999999999999999 655543 2
Q ss_pred cCCCCccEEEEEEeecCCCCCcceEEEEEechhhhhccCCCceEEeec
Q 010107 195 VGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFL 242 (518)
Q Consensus 195 l~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n 242 (518)
+. +..|.|+|||++..+++++||++.++........+...+.+++.
T Consensus 79 l~--~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 79 LD--TASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred hC--ccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 22 47899999999998999999999998654432222233444444
No 53
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.56 E-value=4.2e-14 Score=126.78 Aligned_cols=89 Identities=22% Similarity=0.374 Sum_probs=75.9
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCC
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 212 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~ 212 (518)
+.+.+++|++|+++|.+|.+||||++++.. ..+||+++++++||.||+ |.|.+... ....|.|+|||++..
T Consensus 17 L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~------~~~kT~vi~~t~nP~Wne~f~f~v~~~--~~~~l~i~V~D~d~~ 88 (136)
T cd08375 17 LMVVIVEGRDLKPCNSNGKSDPYCEVSMGS------QEHKTKVVSDTLNPKWNSSMQFFVKDL--EQDVLCITVFDRDFF 88 (136)
T ss_pred EEEEEEEeeCCCCCCCCCCcCcEEEEEECC------EeeeccccCCCCCCccCceEEEEecCc--cCCEEEEEEEECCCC
Confidence 444568999999999999999999999742 368999999999999999 66655432 256899999999999
Q ss_pred CCCcceEEEEEechhhhh
Q 010107 213 GKHDLIGKVQKSLADLEK 230 (518)
Q Consensus 213 ~~~d~IG~~~i~l~~L~~ 230 (518)
+++++||++.+++.++..
T Consensus 89 ~~d~~lG~~~i~l~~l~~ 106 (136)
T cd08375 89 SPDDFLGRTEIRVADILK 106 (136)
T ss_pred CCCCeeEEEEEEHHHhcc
Confidence 999999999999999974
No 54
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.55 E-value=5e-14 Score=124.58 Aligned_cols=116 Identities=14% Similarity=0.213 Sum_probs=87.3
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCC
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 212 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~ 212 (518)
+++.+++|++|+. .+|.+||||++++.. ....+||+++++|+||.|++ |.+.+. .....|.|+|||++..
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~----~~~~~kT~v~~~t~nP~Wne~f~f~~~---~~~~~l~~~v~d~~~~ 71 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDE----PPQKYQSSTQKNTSNPFWDEHFLFELS---PNSKELLFEVYDNGKK 71 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECC----CCcEEEeEEEecCCCCccCceEEEEeC---CCCCEEEEEEEECCCC
Confidence 3566799999988 779999999999742 12468999999999999999 555442 2367899999999999
Q ss_pred CCCcceEEEEEechhhhhccCCCceEEeecccccCCCCCccccceEEEEE
Q 010107 213 GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVDK 262 (518)
Q Consensus 213 ~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~~~~k~~~k~~~G~i~l~~ 262 (518)
+++++||++.+++.++........+++|.... .+ +.+ ..|+|.++-
T Consensus 72 ~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~--~~-~~~-~~G~l~l~~ 117 (126)
T cd08678 72 SDSKFLGLAIVPFDELRKNPSGRQIFPLQGRP--YE-GDS-VSGSITVEF 117 (126)
T ss_pred CCCceEEEEEEeHHHhccCCceeEEEEecCCC--CC-CCC-cceEEEEEE
Confidence 99999999999999997644444455554221 11 112 289999854
No 55
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.54 E-value=3.5e-14 Score=122.73 Aligned_cols=94 Identities=21% Similarity=0.358 Sum_probs=76.9
Q ss_pred eEEEEEeecCCCcCCCC-CCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeecc-CCCCccEEEEEEeec
Q 010107 134 TTELILRCSDLDCKDLF-SRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV-GSKDSPLIIECFNFN 210 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~-g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l-~~~~~~L~veV~D~d 210 (518)
+.+.+++|++|+..|.+ +.+|||+++++... + ..+++|+++++|+||.|++ |.+....- ......|.|+|||+|
T Consensus 3 L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~-~--~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 3 LVVTIHRATDLPKADFGTGSSDPYVTASFAKF-G--KPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD 79 (111)
T ss_pred EEEEEEEeeCCCcccCCCCCCCccEEEEEccC-C--CccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence 45567899999999988 99999999998643 2 3468999999999999999 55443221 113578999999999
Q ss_pred CCCCCcceEEEEEechhhhh
Q 010107 211 SNGKHDLIGKVQKSLADLEK 230 (518)
Q Consensus 211 ~~~~~d~IG~~~i~l~~L~~ 230 (518)
..+++++||++.+++.+|.+
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~ 99 (111)
T cd04041 80 RFTADDRLGRVEIDLKELIE 99 (111)
T ss_pred CCCCCCcceEEEEEHHHHhc
Confidence 99999999999999999964
No 56
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.54 E-value=7.7e-14 Score=123.43 Aligned_cols=112 Identities=15% Similarity=0.201 Sum_probs=85.4
Q ss_pred EEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCCC
Q 010107 135 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNG 213 (518)
Q Consensus 135 i~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~~ 213 (518)
.+.+++|++|+..|.+|.+|||+++...+ ..++|+++++++||.|++ |.+... +..+.|.|+|||++..+
T Consensus 6 ~V~v~~A~~L~~~d~~g~~dPyv~v~~~~------~~~kT~v~~~t~nP~Wne~f~f~~~---~~~~~l~i~V~d~~~~~ 76 (126)
T cd04046 6 QVHVHSAEGLSKQDSGGGADPYVIIKCEG------ESVRSPVQKDTLSPEFDTQAIFYRK---KPRSPIKIQVWNSNLLC 76 (126)
T ss_pred EEEEEeCcCCCCCCCCCCcCccEEEEECC------EEEEeCccCCCCCCcccceEEEEec---CCCCEEEEEEEECCCCC
Confidence 34468999999999999999999998642 258999999999999999 444432 34678999999998764
Q ss_pred CCcceEEEEEechhhhhccCCCceEEeecccccCCCCCccccceEEEE
Q 010107 214 KHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 261 (518)
Q Consensus 214 ~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~~~~k~~~k~~~G~i~l~ 261 (518)
+++||++.+++.++. .....++.|.... ++.+.+. .|+|.++
T Consensus 77 -d~~lG~~~~~l~~~~--~~~~~~~~l~~~~--~~~~~~~-~G~i~~~ 118 (126)
T cd04046 77 -DEFLGQATLSADPND--SQTLRTLPLRKRG--RDAAGEV-PGTISVK 118 (126)
T ss_pred -CCceEEEEEecccCC--CcCceEEEcccCC--CCCCCCC-CCEEEEE
Confidence 799999999998863 3445667775222 1223333 9999985
No 57
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.54 E-value=4.3e-14 Score=122.00 Aligned_cols=102 Identities=22% Similarity=0.296 Sum_probs=79.9
Q ss_pred EEEEEeecCCCcCC-CCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCce-ee-eEEeeeccCCCCccEEEEEEeecC
Q 010107 135 TELILRCSDLDCKD-LFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTW-KS-VFLNIQQVGSKDSPLIIECFNFNS 211 (518)
Q Consensus 135 i~~~i~a~~L~~~d-~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W-~e-f~~~~~~l~~~~~~L~veV~D~d~ 211 (518)
.+.+++|++|+.++ ..+.+|||+++++.+ ..+||+++++++||.| +| |.+.+..-.-.++.|.|+|||++.
T Consensus 2 ~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~------~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~ 75 (110)
T cd08688 2 KVRVVAARDLPVMDRSSDLTDAFVEVKFGS------TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT 75 (110)
T ss_pred EEEEEEEECCCccccCCCCCCceEEEEECC------eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC
Confidence 35678999999998 478999999999852 5799999999999999 88 555443211124789999999999
Q ss_pred CCCCcceEEEEEechhhhhc---cCCCceEEeec
Q 010107 212 NGKHDLIGKVQKSLADLEKL---HSSGQGQNLFL 242 (518)
Q Consensus 212 ~~~~d~IG~~~i~l~~L~~~---~~~~~~~~l~n 242 (518)
.+++++||++.+++.++... .....+|+|++
T Consensus 76 ~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 76 YSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 99999999999999999752 11234666654
No 58
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.54 E-value=2.3e-14 Score=127.60 Aligned_cols=122 Identities=19% Similarity=0.281 Sum_probs=98.8
Q ss_pred ceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCC
Q 010107 119 GKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGS 197 (518)
Q Consensus 119 G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~ 197 (518)
|+|.+++.|.+..+.+.+.+++|++|+..+..+.+|||+++++.+. +.....++|++++++.||.|++ |.|.+....-
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~-~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l 79 (134)
T cd00276 1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQG-GKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQL 79 (134)
T ss_pred CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcC-CeEeeeecCcceecCCCCeeeeeEEEECCHHHh
Confidence 7899999998877888888899999999998999999999999753 4456789999999999999999 5555432110
Q ss_pred CCccEEEEEEeecCCCCCcceEEEEEechhhhhccCCCceEEeecc
Q 010107 198 KDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLS 243 (518)
Q Consensus 198 ~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~ 243 (518)
....|.|+|||++..+++++||.+.+++.+ . ..+...++.|++.
T Consensus 80 ~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~-~-~~~~~~W~~l~~~ 123 (134)
T cd00276 80 EEVSLVITVVDKDSVGRNEVIGQVVLGPDS-G-GEELEHWNEMLAS 123 (134)
T ss_pred CCcEEEEEEEecCCCCCCceeEEEEECCCC-C-CcHHHHHHHHHhC
Confidence 257899999999988889999999999999 2 3444556677664
No 59
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.54 E-value=1.1e-13 Score=121.48 Aligned_cols=114 Identities=15% Similarity=0.155 Sum_probs=85.7
Q ss_pred EEEEEeecCCCcCC-CCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCC
Q 010107 135 TELILRCSDLDCKD-LFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 212 (518)
Q Consensus 135 i~~~i~a~~L~~~d-~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~ 212 (518)
.+.+++|++|+.++ ..|.+||||++++.. ..++||+++++|+||.|+| |.+.+. +..+.|.|.|||++..
T Consensus 3 ~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~-----~~~~kT~v~~kt~~P~WnE~F~f~v~---~~~~~l~~~v~d~~~~ 74 (121)
T cd08401 3 KIKIGEAKNLPPRSGPNKMRDCYCTVNLDQ-----EEVFRTKTVEKSLCPFFGEDFYFEIP---RTFRHLSFYIYDRDVL 74 (121)
T ss_pred EEEEEEccCCCCCCCCCCCcCcEEEEEECC-----ccEEEeeEEECCCCCccCCeEEEEcC---CCCCEEEEEEEECCCC
Confidence 34578999999874 568899999998842 2468999999999999999 665553 2257899999999999
Q ss_pred CCCcceEEEEEechhhhhccCCCceEEeecccccCCCCCccccceEEEE
Q 010107 213 GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 261 (518)
Q Consensus 213 ~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~~~~k~~~k~~~G~i~l~ 261 (518)
+++++||.+.++++++........+++|......+ +. .|.|.|.
T Consensus 75 ~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~----~~-~G~i~l~ 118 (121)
T cd08401 75 RRDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADS----EV-QGKVHLE 118 (121)
T ss_pred CCCceEEEEEEEHHHccCCCCcEeeEEEEccCCCC----cc-cEEEEEE
Confidence 99999999999999996432223455554322111 22 8999875
No 60
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.54 E-value=9.5e-14 Score=120.76 Aligned_cols=88 Identities=20% Similarity=0.328 Sum_probs=75.4
Q ss_pred EEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCCC
Q 010107 135 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNG 213 (518)
Q Consensus 135 i~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~~ 213 (518)
.+.+++|++|+.+|.++.+|||+++++.+ ..++|+++++|+||.|++ |.+.+.. ...+.|.|+|||++..+
T Consensus 3 ~V~v~~a~~L~~~~~~~~~dPyv~v~~~~------~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~~l~v~v~d~~~~~ 74 (116)
T cd08376 3 TIVLVEGKNLPPMDDNGLSDPYVKFRLGN------EKYKSKVCSKTLNPQWLEQFDLHLFD--DQSQILEIEVWDKDTGK 74 (116)
T ss_pred EEEEEEEECCCCCCCCCCCCcEEEEEECC------EeEecccccCCCCCceeEEEEEEecC--CCCCEEEEEEEECCCCC
Confidence 34568999999999999999999999842 368999999999999999 6655432 23688999999999988
Q ss_pred CCcceEEEEEechhhhh
Q 010107 214 KHDLIGKVQKSLADLEK 230 (518)
Q Consensus 214 ~~d~IG~~~i~l~~L~~ 230 (518)
++++||++.+++.++..
T Consensus 75 ~~~~iG~~~~~l~~l~~ 91 (116)
T cd08376 75 KDEFIGRCEIDLSALPR 91 (116)
T ss_pred CCCeEEEEEEeHHHCCC
Confidence 99999999999999864
No 61
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.54 E-value=9.6e-14 Score=122.70 Aligned_cols=117 Identities=17% Similarity=0.280 Sum_probs=88.4
Q ss_pred EEEEEeecCCCcCCC--CCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecC
Q 010107 135 TELILRCSDLDCKDL--FSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 211 (518)
Q Consensus 135 i~~~i~a~~L~~~d~--~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~ 211 (518)
.+.+++|++|+.++. .+.+|||++++... ..++|+++++++||.|++ |.+.+.. ...+.|.|+|||++.
T Consensus 4 ~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~------~~~kT~~~~~t~~P~Wne~f~~~~~~--~~~~~l~i~v~d~~~ 75 (128)
T cd04024 4 RVHVVEAKDLAAKDRSGKGKSDPYAILSVGA------QRFKTQTIPNTLNPKWNYWCEFPIFS--AQNQLLKLILWDKDR 75 (128)
T ss_pred EEEEEEeeCCCcccCCCCCCcCCeEEEEECC------EEEecceecCCcCCccCCcEEEEecC--CCCCEEEEEEEECCC
Confidence 345689999999998 89999999998732 368999999999999999 7666653 236789999999999
Q ss_pred CCCCcceEEEEEechhhhhc--cC-CCceEEeecccccCCCCCccccceEEEEE
Q 010107 212 NGKHDLIGKVQKSLADLEKL--HS-SGQGQNLFLSTAAGNNNHKILNSQLFVDK 262 (518)
Q Consensus 212 ~~~~d~IG~~~i~l~~L~~~--~~-~~~~~~l~n~~~~~k~~~k~~~G~i~l~~ 262 (518)
.+++++||++.+++.++... .+ ...++.|...+ .. +.++. +|+|.|.-
T Consensus 76 ~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~-~~-~~~~~-~G~i~l~~ 126 (128)
T cd04024 76 FAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTR-PG-KTSVV-SGEIHLQF 126 (128)
T ss_pred CCCCCcceEEEEEHHHhhcccccCccceeEEccCcc-cC-ccccc-cceEEEEE
Confidence 88999999999999999631 12 23345554332 12 22233 99999853
No 62
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.54 E-value=5.3e-14 Score=124.77 Aligned_cols=107 Identities=15% Similarity=0.185 Sum_probs=90.9
Q ss_pred eeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCC-CCceee-eEEeeeccCC
Q 010107 120 KLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNET-KPTWKS-VFLNIQQVGS 197 (518)
Q Consensus 120 ~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tl-nP~W~e-f~~~~~~l~~ 197 (518)
+|.+++.|.+..+.+.+.+++|+||++++..+.+||||++++... ++.....||+++++|+ ||.||| |.|.+.. .+
T Consensus 2 el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~-~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~-~~ 79 (135)
T cd08692 2 ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFST-GGLLYKKKTRLVKSSNGQVKWGETMIFPVTQ-QE 79 (135)
T ss_pred eEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEEC-CCcceeecCccEECCCCCceecceEEEeCCc-hh
Confidence 688999999999999999999999999866677799999999864 6677899999999996 699999 5555443 23
Q ss_pred CCccEEEEEEeecCCCCCcceEEEEEechhh
Q 010107 198 KDSPLIIECFNFNSNGKHDLIGKVQKSLADL 228 (518)
Q Consensus 198 ~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L 228 (518)
.+..|.|+|||++..+++++||++.++.++.
T Consensus 80 ~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 80 HGIQFLIKLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred heeEEEEEEEeCCCCcCCceEEEEEECCccC
Confidence 4578999999999999999999999999774
No 63
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.53 E-value=7.4e-14 Score=120.12 Aligned_cols=90 Identities=17% Similarity=0.178 Sum_probs=73.3
Q ss_pred eEEEEEeecCCCcCCCC----CCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEe
Q 010107 134 TTELILRCSDLDCKDLF----SRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFN 208 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~----g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D 208 (518)
+.+.+++|++|+..|.. +.+|||+++++.. .++||+++++++||+||| |.+.+.. .+....|.|+|||
T Consensus 3 l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~------~~~kT~v~~~t~nPvWne~f~f~v~~-~~~~~~L~~~V~D 75 (108)
T cd04039 3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR------RVFRTSWRRHTLNPVFNERLAFEVYP-HEKNFDIQFKVLD 75 (108)
T ss_pred EEEEEEeeeCCCCccccCCCCCccCceEEEEECC------EeEeeeeecCCCCCcccceEEEEEeC-ccCCCEEEEEEEE
Confidence 34556899999988743 3589999999742 367999999999999999 5555433 2235689999999
Q ss_pred ecCCCCCcceEEEEEechhhhh
Q 010107 209 FNSNGKHDLIGKVQKSLADLEK 230 (518)
Q Consensus 209 ~d~~~~~d~IG~~~i~l~~L~~ 230 (518)
+|..+++++||++.++|.+|..
T Consensus 76 ~d~~~~dd~IG~~~l~L~~l~~ 97 (108)
T cd04039 76 KDKFSFNDYVATGSLSVQELLN 97 (108)
T ss_pred CCCCCCCcceEEEEEEHHHHHh
Confidence 9999999999999999999975
No 64
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.52 E-value=9.2e-14 Score=126.13 Aligned_cols=108 Identities=18% Similarity=0.273 Sum_probs=83.0
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeec------------cCC-CC
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQ------------VGS-KD 199 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~------------l~~-~~ 199 (518)
+.+.+++|++|+. ..|.+||||++++.+. ......+||+++++|+||+||| |.|.+.. ..+ ..
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~-~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYS-NKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCC-cccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 4566799999998 5689999999999753 2234578999999999999999 6666531 111 23
Q ss_pred ccEEEEEEeecCCCCCcceEEEEEechhhhhc-cCCCceEEeeccc
Q 010107 200 SPLIIECFNFNSNGKHDLIGKVQKSLADLEKL-HSSGQGQNLFLST 244 (518)
Q Consensus 200 ~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~-~~~~~~~~l~n~~ 244 (518)
..|.|+|||++..++++|||++.+++.++... .....||.|...+
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~ 124 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence 67999999999888899999999999999753 2345577775443
No 65
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.52 E-value=1.7e-13 Score=120.42 Aligned_cols=115 Identities=14% Similarity=0.217 Sum_probs=87.5
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCC
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 212 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~ 212 (518)
+.+.+++|++|+++|.+|++|||++++.. + ..++||+++++++||.|++ |.+.+. +..+.|.|+|||++..
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~---~--~~~~kT~v~~~t~nP~Wne~f~~~~~---~~~~~l~v~v~d~~~~ 73 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD---N--EVIIRTATVWKTLNPFWGEEYTVHLP---PGFHTVSFYVLDEDTL 73 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEEC---C--EeeeeeeeEcCCCCCcccceEEEeeC---CCCCEEEEEEEECCCC
Confidence 45667899999999999999999999874 2 2468999999999999998 666543 2357899999999999
Q ss_pred CCCcceEEEEEechhhhhccC-CCceEEeecccccCCCCCccccceEEEE
Q 010107 213 GKHDLIGKVQKSLADLEKLHS-SGQGQNLFLSTAAGNNNHKILNSQLFVD 261 (518)
Q Consensus 213 ~~~d~IG~~~i~l~~L~~~~~-~~~~~~l~n~~~~~k~~~k~~~G~i~l~ 261 (518)
+++++||++.++++++..... ...++.|..... . .+ ..|+|.+.
T Consensus 74 ~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~-~---~~-~~G~i~l~ 118 (121)
T cd04054 74 SRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDP-D---EE-VQGEIHLE 118 (121)
T ss_pred CCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCC-C---Cc-cccEEEEE
Confidence 999999999999998863211 334566543221 1 11 28999774
No 66
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.52 E-value=1.5e-13 Score=125.22 Aligned_cols=120 Identities=16% Similarity=0.193 Sum_probs=89.1
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccC-CCCCceee-eEEeeeccCCCCccEEEEEEeecC
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKN-ETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 211 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~-tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~ 211 (518)
+.+.+++|++|+++|.+|++|||+++++.+ ..++|+++.+ ++||+||| |.|.+... ....|.|+|||++.
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~------~~~kTk~~~~~t~nP~WNE~F~f~v~~~--~~~~l~v~V~d~~~ 73 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGN------QVLRTRPSQTRNGNPSWNEELMFVAAEP--FEDHLILSVEDRVG 73 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECC------EEeeeEeccCCCCCCcccCcEEEEecCc--cCCeEEEEEEEecC
Confidence 345678999999999999999999999853 4779998877 69999999 66665432 24689999999998
Q ss_pred CCCCcceEEEEEechhhhhcc----CCCceEEeeccccc--CCCCCccccceEEEEE
Q 010107 212 NGKHDLIGKVQKSLADLEKLH----SSGQGQNLFLSTAA--GNNNHKILNSQLFVDK 262 (518)
Q Consensus 212 ~~~~d~IG~~~i~l~~L~~~~----~~~~~~~l~n~~~~--~k~~~k~~~G~i~l~~ 262 (518)
.+++++||++.++|+++.... ....+++|..+.+. .|+..+. +|.|.|.-
T Consensus 74 ~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~-~g~l~l~i 129 (150)
T cd04019 74 PNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKF-ASRIHLRL 129 (150)
T ss_pred CCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcc-cccEEEEE
Confidence 888999999999999985321 12457777665320 1122233 77777743
No 67
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.52 E-value=4e-14 Score=127.58 Aligned_cols=86 Identities=20% Similarity=0.437 Sum_probs=76.7
Q ss_pred EEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCCCC
Q 010107 136 ELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGK 214 (518)
Q Consensus 136 ~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~~~ 214 (518)
+.+++|.+|..+|+.++|||||.+.+.+ ...||.++++++||+||+ +.|++. +.+.+|+++|||+|..++
T Consensus 10 v~v~~g~~L~~rD~~~sSDPyVVl~lg~------q~lkT~~v~~n~NPeWNe~ltf~v~---d~~~~lkv~VyD~D~fs~ 80 (168)
T KOG1030|consen 10 VRVKRGKNLAIRDFLGSSDPYVVLELGN------QKLKTRVVYKNLNPEWNEELTFTVK---DPNTPLKVTVYDKDTFSS 80 (168)
T ss_pred EEEEeecCeeeeccccCCCCeEEEEECC------eeeeeeeecCCCCCcccceEEEEec---CCCceEEEEEEeCCCCCc
Confidence 4468999999999989999999999874 378999999999999999 666664 458999999999999999
Q ss_pred CcceEEEEEechhhhh
Q 010107 215 HDLIGKVQKSLADLEK 230 (518)
Q Consensus 215 ~d~IG~~~i~l~~L~~ 230 (518)
+|+||.++++|..+..
T Consensus 81 dD~mG~A~I~l~p~~~ 96 (168)
T KOG1030|consen 81 DDFMGEATIPLKPLLE 96 (168)
T ss_pred ccccceeeeccHHHHH
Confidence 9999999999999975
No 68
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.52 E-value=1.5e-13 Score=120.97 Aligned_cols=115 Identities=23% Similarity=0.301 Sum_probs=86.4
Q ss_pred EEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCCC
Q 010107 135 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNG 213 (518)
Q Consensus 135 i~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~~ 213 (518)
.+.+++|++|+.++.++.+|||++++..+ ..++||+++++++||.|++ |.+.+.. ...|.|+|||++..+
T Consensus 3 ~v~v~~A~~L~~~~~~~~~dpyv~v~~~~-----~~~~kT~v~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~~~~ 73 (123)
T cd08382 3 RLTVLCADGLAKRDLFRLPDPFAVITVDG-----GQTHSTDVAKKTLDPKWNEHFDLTVGP----SSIITIQVFDQKKFK 73 (123)
T ss_pred EEEEEEecCCCccCCCCCCCcEEEEEECC-----ccceEccEEcCCCCCcccceEEEEeCC----CCEEEEEEEECCCCC
Confidence 45578999999999999999999999842 3578999999999999997 6666542 679999999999887
Q ss_pred C--CcceEEEEEechhhhhccCC-CceEEeecccccCCCCCccccceEEEE
Q 010107 214 K--HDLIGKVQKSLADLEKLHSS-GQGQNLFLSTAAGNNNHKILNSQLFVD 261 (518)
Q Consensus 214 ~--~d~IG~~~i~l~~L~~~~~~-~~~~~l~n~~~~~k~~~k~~~G~i~l~ 261 (518)
+ +++||++.+++.++....+. ..++.|...++. .+. ...|+|.+.
T Consensus 74 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~-~~~--~~~G~v~~~ 121 (123)
T cd08382 74 KKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKS-DNL--SVRGKIVVS 121 (123)
T ss_pred CCCCceEeEEEEEHHHccccCCCccceeEeecCCCC-CCc--eEeeEEEEE
Confidence 5 47999999999999754333 334555332211 111 137888763
No 69
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.52 E-value=9.1e-14 Score=123.02 Aligned_cols=111 Identities=23% Similarity=0.272 Sum_probs=85.6
Q ss_pred EEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCCCCC
Q 010107 137 LILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKH 215 (518)
Q Consensus 137 ~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~~~~ 215 (518)
++++|++|+. .+|++|||++++... ..++|++++++.||.|++ |.+.+.......+.|.|+|||++..+++
T Consensus 1 ~vi~a~~L~~--~~g~~Dpyv~v~~~~------~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d 72 (127)
T cd08373 1 LVVSLKNLPG--LKGKGDRIAKVTFRG------VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRN 72 (127)
T ss_pred CeEEeeCCcc--cCCCCCCEEEEEECC------EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCC
Confidence 3689999998 789999999999842 258999999999999998 7766653323468899999999999999
Q ss_pred cceEEEEEechhhhhccCCCceEEeecccccCCCCCccccceEEEE
Q 010107 216 DLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 261 (518)
Q Consensus 216 d~IG~~~i~l~~L~~~~~~~~~~~l~n~~~~~k~~~k~~~G~i~l~ 261 (518)
++||++.++++++........+++|.+.+. +. ..|+|.+.
T Consensus 73 ~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~--~~----~~~~l~l~ 112 (127)
T cd08373 73 RLIGSATVSLQDLVSEGLLEVTEPLLDSNG--RP----TGATISLE 112 (127)
T ss_pred ceEEEEEEEhhHcccCCceEEEEeCcCCCC--Cc----ccEEEEEE
Confidence 999999999999975333334566665432 11 26777764
No 70
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.51 E-value=3.2e-13 Score=120.94 Aligned_cols=90 Identities=22% Similarity=0.352 Sum_probs=72.4
Q ss_pred EEEEeecCCCcCCCCCCCCcEEEEEEEecCCce--------eeEeeeccccCCCCCce-ee-eEEeeeccCCCCccEEEE
Q 010107 136 ELILRCSDLDCKDLFSRNDPFLVISKIVESGTH--------IPVCKTEVLKNETKPTW-KS-VFLNIQQVGSKDSPLIIE 205 (518)
Q Consensus 136 ~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~--------~~~~kTevik~tlnP~W-~e-f~~~~~~l~~~~~~L~ve 205 (518)
+..++|++|+ ++.+|++|||+++++.+. +++ ...+||+++++++||+| ++ |.+... .+..|.|+
T Consensus 5 ~~~~~A~~L~-~~~fg~~DPyvki~~~~~-~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~----~~~~L~v~ 78 (137)
T cd08691 5 LSGLQARNLK-KGMFFNPDPYVKISIQPG-KRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL----PTDVLEIE 78 (137)
T ss_pred EEEEEeCCCC-CccCCCCCceEEEEEECC-CcccccccccccceeeeeeEcCCCCCceEceEEEEEcC----CCCEEEEE
Confidence 4568999998 788999999999999742 222 24799999999999999 87 544432 25689999
Q ss_pred EEeecCCCC---CcceEEEEEechhhhhc
Q 010107 206 CFNFNSNGK---HDLIGKVQKSLADLEKL 231 (518)
Q Consensus 206 V~D~d~~~~---~d~IG~~~i~l~~L~~~ 231 (518)
|||++..++ +++||++.+++.++...
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~ 107 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLER 107 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhccc
Confidence 999876544 69999999999999753
No 71
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.49 E-value=1.8e-13 Score=119.89 Aligned_cols=90 Identities=48% Similarity=0.804 Sum_probs=77.9
Q ss_pred CEEEEEEcCC-CcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEe
Q 010107 1 MLVVYMKARD-GALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCT 79 (518)
Q Consensus 1 ~~vv~~~~~~-~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~ 79 (518)
||+|++.... +.|.+.+||+++++|+||+|+++|.+.+..+..+.|+|+|||+|... ..++++++||++.++
T Consensus 24 yv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~-------~~~~~~d~iG~~~i~ 96 (120)
T cd04048 24 FVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKS-------KDLSDHDFLGEAECT 96 (120)
T ss_pred EEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCc-------CCCCCCcEEEEEEEE
Confidence 6888888744 58999999999999999999999999988888899999999999510 014689999999999
Q ss_pred ccccccccceeEEEeccC
Q 010107 80 LSQIVTRKNRSLTLDLVR 97 (518)
Q Consensus 80 L~~l~~~~~~~~~~~L~~ 97 (518)
+++|+..++...+++|..
T Consensus 97 l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 97 LGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred HHHHhcCCCcEEEEEccC
Confidence 999999888999999844
No 72
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.49 E-value=3.4e-13 Score=119.48 Aligned_cols=112 Identities=12% Similarity=0.256 Sum_probs=83.5
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCC
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 212 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~ 212 (518)
+.+.+++|++|+.+|.+|.+|||++++..+ ..++|+++++++||.|++ |.+... .....|.|+|||+|..
T Consensus 3 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~~v~~t~~P~Wne~f~f~~~---~~~~~l~i~v~d~d~~ 73 (127)
T cd04027 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVGK------TKKRTKTIPQNLNPVWNEKFHFECH---NSSDRIKVRVWDEDDD 73 (127)
T ss_pred EEEEEEECcCCcCCCCCCCcCcEEEEEECC------EeeecceecCCCCCccceEEEEEec---CCCCEEEEEEEECCCC
Confidence 445578999999999999999999998742 368999999999999999 555443 2256899999999853
Q ss_pred -----------CCCcceEEEEEechhhhhccCCCceEEeecccccCCCCCccccceEEEE
Q 010107 213 -----------GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 261 (518)
Q Consensus 213 -----------~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~~~~k~~~k~~~G~i~l~ 261 (518)
+++++||++.+++.++. .....++.|. ++. ++. + .+|+|.+.
T Consensus 74 ~~~~~~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~-~~~--~~~-~-~~G~i~~~ 126 (127)
T cd04027 74 IKSRLKQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLE-KRT--DKS-A-VSGAIRLH 126 (127)
T ss_pred cccccceeccccCCCcceEEEEEhHHcc--CCCCeEEECc-cCC--CCC-c-EeEEEEEE
Confidence 57899999999999984 2333445553 322 111 1 38998873
No 73
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.48 E-value=4.5e-13 Score=117.13 Aligned_cols=108 Identities=21% Similarity=0.351 Sum_probs=83.7
Q ss_pred EEEEEeecCCCcCCC------CCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEE
Q 010107 135 TELILRCSDLDCKDL------FSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECF 207 (518)
Q Consensus 135 i~~~i~a~~L~~~d~------~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~ 207 (518)
.+.+++|++|+.+|. .|.+|||++++..+ ..++|+++++++||.|++ |.+.+.. ...+.|.|+||
T Consensus 4 ~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~------~~~kT~~~~~t~~P~W~e~f~~~v~~--~~~~~l~i~v~ 75 (121)
T cd08391 4 RIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA------QTFKSKVIKENLNPKWNEVYEAVVDE--VPGQELEIELF 75 (121)
T ss_pred EEEEEEccCCcccccccccCCCCCcCCEEEEEECC------EeEEccccCCCCCCcccceEEEEeCC--CCCCEEEEEEE
Confidence 455789999999885 36899999999852 479999999999999999 6555532 24678999999
Q ss_pred eecCCCCCcceEEEEEechhhhhccCCCceEEeecccccCCCCCccccceEEEE
Q 010107 208 NFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 261 (518)
Q Consensus 208 D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~~~~k~~~k~~~G~i~l~ 261 (518)
|++.. ++++||.+.+++.++........+++|.... .|.|.|.
T Consensus 76 d~~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~----------~G~~~~~ 118 (121)
T cd08391 76 DEDPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVK----------SGRLHLK 118 (121)
T ss_pred ecCCC-CCCcEEEEEEEHHHhcccCccceEEECcCCC----------CceEEEE
Confidence 99987 8899999999999997533333455654321 7888774
No 74
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.46 E-value=5.8e-13 Score=117.01 Aligned_cols=109 Identities=16% Similarity=0.262 Sum_probs=82.8
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCC
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 212 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~ 212 (518)
+.+.+++|++|+.+ .+|||+++++.+ ...||+++++++||.||| |.+....+ ....|.|+|||++..
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~------~~~kT~v~~~t~nP~Wne~F~f~~~~~--~~~~L~~~v~d~d~~ 69 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGN------YKGSTKAIERTSNPEWNQVFAFSKDRL--QGSTLEVSVWDKDKA 69 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECC------ccccccccCCCCCCccceEEEEEcCCC--cCCEEEEEEEeCCCC
Confidence 34567899999987 799999999853 368999999999999999 66665432 367899999999976
Q ss_pred CCCcceEEEEEechhhhhcc-----CCCceEEeecccccCCCCCccccceEEEE
Q 010107 213 GKHDLIGKVQKSLADLEKLH-----SSGQGQNLFLSTAAGNNNHKILNSQLFVD 261 (518)
Q Consensus 213 ~~~d~IG~~~i~l~~L~~~~-----~~~~~~~l~n~~~~~k~~~k~~~G~i~l~ 261 (518)
++++||++.++++++.... ....+|.|...+. .+. +|+|.+.
T Consensus 70 -~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-----~~~-~G~i~l~ 116 (121)
T cd08378 70 -KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-----GRV-GGELMLA 116 (121)
T ss_pred -cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC-----Ccc-ceEEEEE
Confidence 7899999999999986421 1135677655321 122 8999873
No 75
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.46 E-value=7e-13 Score=116.42 Aligned_cols=114 Identities=23% Similarity=0.361 Sum_probs=84.6
Q ss_pred eEEEEEeecCCCcCC-CCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecC
Q 010107 134 TTELILRCSDLDCKD-LFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 211 (518)
Q Consensus 134 li~~~i~a~~L~~~d-~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~ 211 (518)
+.+.+++|++|+..+ ..+.+|||+++...+. ...++|+++++++||.|++ |.+.+. ...+.|.|+|||++.
T Consensus 4 l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~----~~~~kT~~~~~~~~P~Wne~~~~~v~---~~~~~l~~~v~d~~~ 76 (124)
T cd04044 4 LAVTIKSARGLKGSDIIGGTVDPYVTFSISNR----RELARTKVKKDTSNPVWNETKYILVN---SLTEPLNLTVYDFND 76 (124)
T ss_pred EEEEEEcccCCCcccccCCCCCCeEEEEECCC----CcceEeeeecCCCCCcceEEEEEEeC---CCCCEEEEEEEecCC
Confidence 345578999999766 4467999999998631 3579999999999999999 555543 346789999999999
Q ss_pred CCCCcceEEEEEechhhhhccCCCceEEeecccccCCCCCccccceEEEE
Q 010107 212 NGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 261 (518)
Q Consensus 212 ~~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~~~~k~~~k~~~G~i~l~ 261 (518)
.+++++||.+.+++.++.........+..+.. ++| . .|+|.+.
T Consensus 77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~--~~k----~-~G~i~~~ 119 (124)
T cd04044 77 KRKDKLIGTAEFDLSSLLQNPEQENLTKNLLR--NGK----P-VGELNYD 119 (124)
T ss_pred CCCCceeEEEEEEHHHhccCccccCcchhhhc--CCc----c-ceEEEEE
Confidence 88999999999999999753332212222221 122 2 8999884
No 76
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.45 E-value=8.5e-13 Score=115.78 Aligned_cols=101 Identities=19% Similarity=0.362 Sum_probs=83.4
Q ss_pred EEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCCC
Q 010107 135 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNG 213 (518)
Q Consensus 135 i~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~~ 213 (518)
.+.+++|++|+..+.++.+|||++++.. + ..+++|++++++.||.|++ |.+++.. ..+.|.|+|||++..+
T Consensus 4 ~V~Vi~a~~L~~~d~~g~~DPYv~v~~~---~--~~~~kT~~~~~t~~P~Wne~f~~~v~~---~~~~L~v~v~d~~~~~ 75 (120)
T cd04045 4 RLHIRKANDLKNLEGVGKIDPYVRVLVN---G--IVKGRTVTISNTLNPVWDEVLYVPVTS---PNQKITLEVMDYEKVG 75 (120)
T ss_pred EEEEEeeECCCCccCCCCcCCEEEEEEC---C--EEeeceeEECCCcCCccCceEEEEecC---CCCEEEEEEEECCCCC
Confidence 4556899999999999999999999974 2 3579999999999999999 5455432 3578999999999999
Q ss_pred CCcceEEEEEechhhhhccCCCceEEeeccc
Q 010107 214 KHDLIGKVQKSLADLEKLHSSGQGQNLFLST 244 (518)
Q Consensus 214 ~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~ 244 (518)
++++||++.+++.++... ....+|.+++.+
T Consensus 76 ~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 76 KDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred CCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 999999999999999763 445677777754
No 77
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.45 E-value=3e-13 Score=119.56 Aligned_cols=88 Identities=22% Similarity=0.276 Sum_probs=72.8
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCC
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 212 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~ 212 (518)
+.+.+++|++|+ .+.++.+|||+++++.+ .++||+++++++||+||| |.|....+ +....|+|+|||++..
T Consensus 30 L~V~V~~A~~L~-~d~~g~~DPYVkV~~~~------~~~kT~vi~~t~nPvWNE~F~f~~~~~-~~~~~L~v~V~D~d~~ 101 (127)
T cd04032 30 LTVTVLRATGLW-GDYFTSTDGYVKVFFGG------QEKRTEVIWNNNNPRWNATFDFGSVEL-SPGGKLRFEVWDRDNG 101 (127)
T ss_pred EEEEEEECCCCC-cCcCCCCCeEEEEEECC------ccccCceecCCCCCcCCCEEEEecccC-CCCCEEEEEEEeCCCC
Confidence 444568899998 47889999999999842 189999999999999999 66653332 2467899999999999
Q ss_pred CCCcceEEEEEechhhh
Q 010107 213 GKHDLIGKVQKSLADLE 229 (518)
Q Consensus 213 ~~~d~IG~~~i~l~~L~ 229 (518)
+++++||++.++|....
T Consensus 102 s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 102 WDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCeeEEEEEEecCCc
Confidence 99999999999999764
No 78
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.43 E-value=3.1e-12 Score=112.88 Aligned_cols=91 Identities=20% Similarity=0.314 Sum_probs=75.7
Q ss_pred EEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCCC
Q 010107 135 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNG 213 (518)
Q Consensus 135 i~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~~ 213 (518)
.+.+++|++|+.++.++.+|||++++..+ .....+||+++++++||.||| |.+.+.. .....|.|+|||++..+
T Consensus 4 ~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~---~~~~~~kT~~~~~t~~P~Wne~f~f~i~~--~~~~~L~i~v~d~d~~~ 78 (126)
T cd04043 4 TIRIVRAENLKADSSNGLSDPYVTLVDTN---GKRRIAKTRTIYDTLNPRWDEEFELEVPA--GEPLWISATVWDRSFVG 78 (126)
T ss_pred EEEEEEeECCCCCCCCCCCCceEEEEECC---CCeeeecccEecCCCCCcccceEEEEcCC--CCCCEEEEEEEECCCCC
Confidence 45578999999999999999999998642 234578999999999999998 6665543 23578999999999988
Q ss_pred CCcceEEEEEechhhhh
Q 010107 214 KHDLIGKVQKSLADLEK 230 (518)
Q Consensus 214 ~~d~IG~~~i~l~~L~~ 230 (518)
++++||++.+++.++..
T Consensus 79 ~~~~iG~~~i~l~~~~~ 95 (126)
T cd04043 79 KHDLCGRASLKLDPKRF 95 (126)
T ss_pred CCceEEEEEEecCHHHc
Confidence 99999999999998753
No 79
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.5e-12 Score=137.34 Aligned_cols=162 Identities=18% Similarity=0.289 Sum_probs=119.6
Q ss_pred cccceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeec
Q 010107 116 KHCGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQ 194 (518)
Q Consensus 116 ~~~G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~ 194 (518)
...|+|.+++.|....+.+.+.+++|++|+.+|..|.||||+++|+.++ +....+|++.++|+||.|+| |.+.+..
T Consensus 151 ~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPd---k~~k~kT~v~r~tlnP~fnEtf~f~v~~ 227 (421)
T KOG1028|consen 151 KAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPD---KKGKFKTRVHRKTLNPVFNETFRFEVPY 227 (421)
T ss_pred eeeeeEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCC---CCCcceeeeeecCcCCccccceEeecCH
Confidence 5579999999999999999999999999999997778999999999975 35689999999999999999 5544222
Q ss_pred cCCCCccEEEEEEeecCCCCCcceEEEEEechhhhhccCCCceEEeecccccCCCCCccccceEEEEEeeehhhhhhhhh
Q 010107 195 VGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVDKFSESVQYTFLDY 274 (518)
Q Consensus 195 l~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~~~~k~~~k~~~G~i~l~~~~~~~~~sFldy 274 (518)
-.-..+.|.+.|||+|+.++|++||++.++|..+........+.++.-... ..... .|+|.+.-+.+..
T Consensus 228 ~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~---~~~~~-~gel~~sL~Y~p~------- 296 (421)
T KOG1028|consen 228 EELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSST---DSEEL-AGELLLSLCYLPT------- 296 (421)
T ss_pred HHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccC---Ccccc-cceEEEEEEeecC-------
Confidence 112378999999999999999999999999988865332223444433221 11122 4799886552221
Q ss_pred cccCceeeEEEEeccccC
Q 010107 275 LAGGFELNFMVAVDFTAS 292 (518)
Q Consensus 275 i~~g~~~~~~~~iDft~s 292 (518)
.|-+.+.++=|=++...
T Consensus 297 -~g~ltv~v~kar~L~~~ 313 (421)
T KOG1028|consen 297 -AGRLTVVVIKARNLKSM 313 (421)
T ss_pred -CCeEEEEEEEecCCCcc
Confidence 23355666666655554
No 80
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.43 E-value=1.3e-12 Score=113.39 Aligned_cols=88 Identities=25% Similarity=0.440 Sum_probs=75.1
Q ss_pred EEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCCCC
Q 010107 136 ELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGK 214 (518)
Q Consensus 136 ~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~~~ 214 (518)
+.+++|++|+..+..+.+|||++++..+ ...++|+++.++.+|.|++ |.+.+.. ...+.|.|+|||++..++
T Consensus 3 v~vi~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~~T~v~~~~~~P~Wne~f~~~~~~--~~~~~l~~~v~d~~~~~~ 75 (115)
T cd04040 3 VDVISAENLPSADRNGKSDPFVKFYLNG-----EKVFKTKTIKKTLNPVWNESFEVPVPS--RVRAVLKVEVYDWDRGGK 75 (115)
T ss_pred EEEEeeeCCCCCCCCCCCCCeEEEEECC-----CcceeeceecCCCCCcccccEEEEecc--CCCCEEEEEEEeCCCCCC
Confidence 4568999999999999999999998842 2468999999999999999 6655542 246789999999999889
Q ss_pred CcceEEEEEechhhhh
Q 010107 215 HDLIGKVQKSLADLEK 230 (518)
Q Consensus 215 ~d~IG~~~i~l~~L~~ 230 (518)
+++||++.+++.++..
T Consensus 76 ~~~iG~~~~~l~~l~~ 91 (115)
T cd04040 76 DDLLGSAYIDLSDLEP 91 (115)
T ss_pred CCceEEEEEEHHHcCC
Confidence 9999999999999965
No 81
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.43 E-value=8.8e-13 Score=120.21 Aligned_cols=101 Identities=20% Similarity=0.344 Sum_probs=78.6
Q ss_pred ceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCc-----------------------eeeEeeeccccCCCCCceee-e
Q 010107 133 TTTELILRCSDLDCKDLFSRNDPFLVISKIVESGT-----------------------HIPVCKTEVLKNETKPTWKS-V 188 (518)
Q Consensus 133 ~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~-----------------------~~~~~kTevik~tlnP~W~e-f 188 (518)
.+.+.+++|++|.++|.+|.+|||+++++.+.... ...+++|+++++++||.|++ |
T Consensus 29 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F 108 (153)
T cd08676 29 VLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETF 108 (153)
T ss_pred EEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccccEE
Confidence 34455789999999999999999999988532110 12468999999999999998 7
Q ss_pred EEeeeccCCCCccEEEEEEeecCCCCCcceEEEEEechhhhhccCCCceEEe
Q 010107 189 FLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 240 (518)
Q Consensus 189 ~~~~~~l~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l 240 (518)
.|.+..+ ....|.|+|||++ +++||++.++++++.. .+...||+|
T Consensus 109 ~f~v~~~--~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 109 RFEVEDV--SNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred EEEeccC--CCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 7776543 2578999999997 7899999999999973 344445543
No 82
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.43 E-value=2e-12 Score=118.89 Aligned_cols=115 Identities=18% Similarity=0.212 Sum_probs=84.8
Q ss_pred eEEEEEeecCCCcCC------------------------------CCCCCCcEEEEEEEecCCceeeEeeeccccCCCCC
Q 010107 134 TTELILRCSDLDCKD------------------------------LFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKP 183 (518)
Q Consensus 134 li~~~i~a~~L~~~d------------------------------~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP 183 (518)
+-+.+++|++|+++| ..|.+|||+++++.+ ..+.||+++++++||
T Consensus 9 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~-----~~~~rT~v~~~~~nP 83 (158)
T cd04015 9 LDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG-----ARVARTRVIENSENP 83 (158)
T ss_pred eEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC-----eEeeEEEEeCCCCCC
Confidence 445568888998887 356799999999852 245799999999999
Q ss_pred ceee-eEEeeeccCCCCccEEEEEEeecCCCCCcceEEEEEechhhhhccCCCceEEeecccccCCCCCccccceEEEE
Q 010107 184 TWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 261 (518)
Q Consensus 184 ~W~e-f~~~~~~l~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~~~~k~~~k~~~G~i~l~ 261 (518)
.||| |.+.+. +..+.|.|+|||+|..+ +++||.+.++++++........+++|.+...+.. +. .|.|++.
T Consensus 84 ~WnE~F~~~~~---~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~---~~-~~~l~v~ 154 (158)
T cd04015 84 VWNESFHIYCA---HYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPP---KP-GAKIRVS 154 (158)
T ss_pred ccceEEEEEcc---CCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCC---CC-CCEEEEE
Confidence 9999 665543 23468999999999875 5899999999999975433345677766533211 12 6788773
No 83
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.42 E-value=1.4e-12 Score=115.03 Aligned_cols=115 Identities=23% Similarity=0.230 Sum_probs=87.0
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeecccc-CCCCCceee-eEEeeecc--CCCCccEEEEEEee
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLK-NETKPTWKS-VFLNIQQV--GSKDSPLIIECFNF 209 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik-~tlnP~W~e-f~~~~~~l--~~~~~~L~veV~D~ 209 (518)
+.+.+++|++|+..+.++++|||++++..+ ...++|++++ ++.||.|++ |.|.+... ++....|.|+|||+
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~-----~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~ 76 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDP-----SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCE 76 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECC-----CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEEC
Confidence 345678999999999999999999999864 2357999876 589999999 65554332 12367899999999
Q ss_pred cCCCCCcceEEEEEechhhhhccCC-----CceEEeecccccCCCCCccccceEEE
Q 010107 210 NSNGKHDLIGKVQKSLADLEKLHSS-----GQGQNLFLSTAAGNNNHKILNSQLFV 260 (518)
Q Consensus 210 d~~~~~d~IG~~~i~l~~L~~~~~~-----~~~~~l~n~~~~~k~~~k~~~G~i~l 260 (518)
+..+++++||++.+++.++...... ..+|.|..++ +|. .|.|.|
T Consensus 77 ~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g~~-----~G~~~~ 125 (125)
T cd04051 77 RPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--GKP-----QGVLNF 125 (125)
T ss_pred CCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--CCc-----CeEEeC
Confidence 9888899999999999999764332 2346666543 222 888864
No 84
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.42 E-value=1.4e-12 Score=117.02 Aligned_cols=104 Identities=22% Similarity=0.296 Sum_probs=81.5
Q ss_pred EEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCC-------------CCc
Q 010107 135 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGS-------------KDS 200 (518)
Q Consensus 135 i~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~-------------~~~ 200 (518)
.+.+++|++|+.+ .++.+|||+++++..+ .+..+++|++++++.||.|++ |.+.+....+ ...
T Consensus 2 ~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~--~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~ 78 (137)
T cd08675 2 SVRVLECRDLALK-SNGTCDPFARVTLNYS--SKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS 78 (137)
T ss_pred EEEEEEccCCCcc-cCCCCCcEEEEEEecC--CcCCeeccceeeCCCCCCcceEEEEEcccccccccccccccccccccc
Confidence 3557899999998 8899999999998742 234679999999999999999 6666544310 356
Q ss_pred cEEEEEEeecCCCCCcceEEEEEechhhhhccCCCceEEee
Q 010107 201 PLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLF 241 (518)
Q Consensus 201 ~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l~ 241 (518)
.|.|+|||++..+++++||++.+++.++........++.|.
T Consensus 79 ~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~ 119 (137)
T cd08675 79 ELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQ 119 (137)
T ss_pred EEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecC
Confidence 89999999999889999999999999997433333455543
No 85
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.42 E-value=2e-12 Score=117.75 Aligned_cols=115 Identities=18% Similarity=0.135 Sum_probs=83.0
Q ss_pred EeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccC------CCCccEEEEEEeecC
Q 010107 139 LRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG------SKDSPLIIECFNFNS 211 (518)
Q Consensus 139 i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~------~~~~~L~veV~D~d~ 211 (518)
..+-+|+..+..+.+|||+++++.-+ +.....+||.++++|+||+||| |.|.+.... -....|.|+|||++.
T Consensus 11 ~~~~~l~~~~~~~~~DpYVk~~l~~p-~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~ 89 (155)
T cd08690 11 CIGIPLPSGWNPKDLDTYVKFEFPYP-NEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGG 89 (155)
T ss_pred eeccccCCCcCCCCCCeEEEEEEecC-CCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCC
Confidence 33444778788889999999997433 2345689999999999999999 665553210 124679999999987
Q ss_pred C-CCCcceEEEEEechhhhhccCCCceEEeecccccCCCCCccccceEEEE
Q 010107 212 N-GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 261 (518)
Q Consensus 212 ~-~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~~~~k~~~k~~~G~i~l~ 261 (518)
. .++++||++.++|+.+........+++|+...+ . ..|.|.++
T Consensus 90 f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k---~----~Gg~l~v~ 133 (155)
T cd08690 90 FLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRK---A----TGGKLEVK 133 (155)
T ss_pred cccCCCeeEEEEEEcccccccCcceEEEEhhhCCC---C----cCCEEEEE
Confidence 5 479999999999999965433344566664221 1 27888873
No 86
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.41 E-value=1.7e-12 Score=116.23 Aligned_cols=114 Identities=24% Similarity=0.392 Sum_probs=82.5
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeecc-C------CCCccEEEE
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV-G------SKDSPLIIE 205 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l-~------~~~~~L~ve 205 (518)
+.+.+++|++|+.+|.+|.+|||++++..+ ..+||+++++|+||.|++ |.+....+ + +....|.|+
T Consensus 3 l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~------~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~ 76 (135)
T cd04017 3 LRAYIYQARDLLAADKSGLSDPFARVSFLN------QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVE 76 (135)
T ss_pred EEEEEEEeecCcCCCCCCCCCCEEEEEECC------eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEE
Confidence 456678999999999999999999999852 368999999999999999 55554332 1 123579999
Q ss_pred EEeecCCCCCcceEEEEE-echhhhhc---cCCCceEEeecccccCCCCCccccceEEEE
Q 010107 206 CFNFNSNGKHDLIGKVQK-SLADLEKL---HSSGQGQNLFLSTAAGNNNHKILNSQLFVD 261 (518)
Q Consensus 206 V~D~d~~~~~d~IG~~~i-~l~~L~~~---~~~~~~~~l~n~~~~~k~~~k~~~G~i~l~ 261 (518)
|||+|..+++++||++.+ ++..+... .....|+.|.. + ++ . +|+|.+.
T Consensus 77 V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~-~--~~----~-~Geil~~ 128 (135)
T cd04017 77 LFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK-G--GQ----S-AGELLAA 128 (135)
T ss_pred EEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec-C--CC----c-hhheeEE
Confidence 999999999999999986 44444321 12224555531 1 11 2 8998873
No 87
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.41 E-value=1.1e-12 Score=119.40 Aligned_cols=90 Identities=23% Similarity=0.268 Sum_probs=74.0
Q ss_pred eEEEEEeecCCCcCCCCC--------------CCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCC
Q 010107 134 TTELILRCSDLDCKDLFS--------------RNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSK 198 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g--------------~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~ 198 (518)
+.+.+++|++|+.+|..+ .+||||++...+ ...||+++++++||+||| |.|++.. .+.
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g------~~~kT~v~~~t~nPvWNE~f~f~v~~-p~~ 74 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG------QKVKTSVKKNSYNPEWNEQIVFPEMF-PPL 74 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC------EeeecceEcCCCCCCcceEEEEEeeC-CCc
Confidence 356679999999998554 689999998753 146999999999999999 6555432 233
Q ss_pred CccEEEEEEeecCCCCCcceEEEEEechhhhh
Q 010107 199 DSPLIIECFNFNSNGKHDLIGKVQKSLADLEK 230 (518)
Q Consensus 199 ~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~ 230 (518)
...|.|+|||+|..+++++||.+.+++.++..
T Consensus 75 ~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~ 106 (151)
T cd04018 75 CERIKIQIRDWDRVGNDDVIGTHFIDLSKISN 106 (151)
T ss_pred CCEEEEEEEECCCCCCCCEEEEEEEeHHHhcc
Confidence 57899999999999999999999999999965
No 88
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.41 E-value=1.5e-12 Score=114.93 Aligned_cols=89 Identities=24% Similarity=0.306 Sum_probs=74.8
Q ss_pred EEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCCC
Q 010107 135 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNG 213 (518)
Q Consensus 135 i~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~~ 213 (518)
-+.+++|++|+++|.+|++|||++++..+ .....||+++++++||.|++ |.+.... +....|.|+|||++..+
T Consensus 3 rV~Vi~a~~L~~~d~~g~~DPYv~v~~~~----~~~~~kT~~v~~t~nP~Wne~f~f~~~~--~~~~~L~~~V~d~d~~~ 76 (124)
T cd04037 3 RVYVVRARNLQPKDPNGKSDPYLKIKLGK----KKINDRDNYIPNTLNPVFGKMFELEATL--PGNSILKISVMDYDLLG 76 (124)
T ss_pred EEEEEECcCCCCCCCCCCCCcEEEEEECC----eeccceeeEEECCCCCccceEEEEEecC--CCCCEEEEEEEECCCCC
Confidence 34578999999999999999999999853 23457899999999999998 6655432 33678999999999999
Q ss_pred CCcceEEEEEechhhh
Q 010107 214 KHDLIGKVQKSLADLE 229 (518)
Q Consensus 214 ~~d~IG~~~i~l~~L~ 229 (518)
++++||++.+++.+..
T Consensus 77 ~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 77 SDDLIGETVIDLEDRF 92 (124)
T ss_pred CCceeEEEEEeecccc
Confidence 9999999999999875
No 89
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.40 E-value=1.8e-12 Score=110.92 Aligned_cols=87 Identities=15% Similarity=0.235 Sum_probs=73.5
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCC
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 212 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~ 212 (518)
+.+.+++|++|+..+..+.+|||+++.+.+ ..+||++++++.||.||| |.|.+.. .....|.|+|||++.
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~------~~~kT~v~~~t~nP~Wne~f~f~v~~--~~~~~l~v~v~d~~~- 72 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGK------TTQKSKVKERTNNPVWEEGFTFLVRN--PENQELEIEVKDDKT- 72 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECC------EEEeCccccCCCCCcccceEEEEeCC--CCCCEEEEEEEECCC-
Confidence 456679999999999999999999999852 478999999999999999 6666643 235689999999875
Q ss_pred CCCcceEEEEEechhhhhc
Q 010107 213 GKHDLIGKVQKSLADLEKL 231 (518)
Q Consensus 213 ~~~d~IG~~~i~l~~L~~~ 231 (518)
+++||++.++|.++...
T Consensus 73 --~~~iG~~~i~l~~l~~~ 89 (105)
T cd04050 73 --GKSLGSLTLPLSELLKE 89 (105)
T ss_pred --CCccEEEEEEHHHhhcc
Confidence 78999999999999753
No 90
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.39 E-value=3.5e-12 Score=112.29 Aligned_cols=101 Identities=20% Similarity=0.330 Sum_probs=79.1
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccC-CCCCceee-eEEeeecc-CCCCccEEEEEEeec
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKN-ETKPTWKS-VFLNIQQV-GSKDSPLIIECFNFN 210 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~-tlnP~W~e-f~~~~~~l-~~~~~~L~veV~D~d 210 (518)
+.+.+++|++|++++.++++|||++++..+ ..++|+++++ ++||.|++ |.+.+... ....+.|.|+|||++
T Consensus 3 L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~------~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~ 76 (124)
T cd04049 3 LEVLLISAKGLQDTDFLGKIDPYVIIQCRT------QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKD 76 (124)
T ss_pred EEEEEEecCCCCCCCCCCCcCceEEEEECC------EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECc
Confidence 445679999999999999999999998742 3578888875 89999999 55555432 112578999999999
Q ss_pred CCCCCcceEEEEEechhhhhccCCCceEEe
Q 010107 211 SNGKHDLIGKVQKSLADLEKLHSSGQGQNL 240 (518)
Q Consensus 211 ~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l 240 (518)
..+++++||++.+++.++........++.|
T Consensus 77 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l 106 (124)
T cd04049 77 NFSDDDFIGEATIHLKGLFEEGVEPGTAEL 106 (124)
T ss_pred cCCCCCeEEEEEEEhHHhhhCCCCcCceEe
Confidence 988999999999999999764443444444
No 91
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.38 E-value=5e-12 Score=111.67 Aligned_cols=88 Identities=20% Similarity=0.299 Sum_probs=71.7
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCC
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 212 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~ 212 (518)
+.+.+++|+ |...+.++.+|||++++..+ ...++|+++++++||.|++ |.+.+. ..+.|.|+|||++..
T Consensus 4 L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~-----~~~~kT~v~~~t~~P~Wne~f~~~~~----~~~~l~~~V~d~~~~ 73 (125)
T cd04021 4 LQITVESAK-LKSNSKSFKPDPYVEVTVDG-----QPPKKTEVSKKTSNPKWNEHFTVLVT----PQSTLEFKVWSHHTL 73 (125)
T ss_pred EEEEEEeeE-CCCCCcCCCCCeEEEEEECC-----cccEEeeeeCCCCCCccccEEEEEeC----CCCEEEEEEEeCCCC
Confidence 344456676 66666689999999998742 1478999999999999999 666543 257899999999999
Q ss_pred CCCcceEEEEEechhhhhc
Q 010107 213 GKHDLIGKVQKSLADLEKL 231 (518)
Q Consensus 213 ~~~d~IG~~~i~l~~L~~~ 231 (518)
+++++||++.+++.++...
T Consensus 74 ~~~~~iG~~~i~l~~l~~~ 92 (125)
T cd04021 74 KADVLLGEASLDLSDILKN 92 (125)
T ss_pred CCCcEEEEEEEEHHHhHhh
Confidence 9999999999999999754
No 92
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.38 E-value=2.6e-12 Score=116.33 Aligned_cols=87 Identities=25% Similarity=0.495 Sum_probs=74.9
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCC
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 212 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~ 212 (518)
+.+.+++|++|+..|. +.+|||+++.+.+ ..+||+++++++||.|+| |.|.+. +....|.|+|||++..
T Consensus 4 L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~------~~~kT~vvk~t~nP~WnE~f~f~i~---~~~~~l~~~V~D~d~~ 73 (145)
T cd04038 4 LKVRVVRGTNLAVRDF-TSSDPYVVLTLGN------QKVKTRVIKKNLNPVWNEELTLSVP---NPMAPLKLEVFDKDTF 73 (145)
T ss_pred EEEEEEeeECCCCCCC-CCcCcEEEEEECC------EEEEeeeEcCCCCCeecccEEEEec---CCCCEEEEEEEECCCC
Confidence 3455789999999888 8999999999842 378999999999999998 666654 3377899999999999
Q ss_pred CCCcceEEEEEechhhhh
Q 010107 213 GKHDLIGKVQKSLADLEK 230 (518)
Q Consensus 213 ~~~d~IG~~~i~l~~L~~ 230 (518)
+++++||++.+++.++..
T Consensus 74 ~~dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 74 SKDDSMGEAEIDLEPLVE 91 (145)
T ss_pred CCCCEEEEEEEEHHHhhh
Confidence 999999999999999975
No 93
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.37 E-value=1e-11 Score=109.79 Aligned_cols=115 Identities=18% Similarity=0.217 Sum_probs=82.7
Q ss_pred ceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecC
Q 010107 133 TTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 211 (518)
Q Consensus 133 ~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~ 211 (518)
.+.+.+++|++|+.+ +.+||||++++.+ ....||++ ++++||.||| |.+.. .......+.|.|||++.
T Consensus 5 ~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~-----~~~~kT~v-~~~~nP~WnE~f~f~~--~~~~~~~l~v~v~d~~~ 73 (126)
T cd08400 5 SLQLNVLEAHKLPVK---HVPHPYCVISLNE-----VKVARTKV-REGPNPVWSEEFVFDD--LPPDVNSFTISLSNKAK 73 (126)
T ss_pred EEEEEEEEeeCCCCC---CCCCeeEEEEECC-----EeEEEeec-CCCCCCccCCEEEEec--CCCCcCEEEEEEEECCC
Confidence 356678999999975 4789999999842 24578887 4689999999 55442 22223579999999999
Q ss_pred CCCCcceEEEEEechhhhhccCCCceEEeecccccCCCCCccccceEEEEE
Q 010107 212 NGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVDK 262 (518)
Q Consensus 212 ~~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~~~~k~~~k~~~G~i~l~~ 262 (518)
.+++++||.+.+++.++........++.|...+. ++.+. .|.|+|.-
T Consensus 74 ~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~---~~~~~-~G~i~l~l 120 (126)
T cd08400 74 RSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASP---LKGGE-WGSLRIRA 120 (126)
T ss_pred CCCCCeEEEEEEEHhHccCCCcccEeEEcccCCC---CCCCc-CcEEEEEE
Confidence 9999999999999999975333334566654321 11123 89999853
No 94
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.35 E-value=7.1e-12 Score=109.90 Aligned_cols=96 Identities=21% Similarity=0.374 Sum_probs=77.5
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||.|++.. .++.||+++++++||+|+|.|.+... +..+.|+|+|||.|. ++++++||++.++|
T Consensus 24 yv~v~~~~-----~~~~kT~~~~~t~nP~Wne~f~f~v~-~~~~~l~~~v~D~d~-----------~~~~~~iG~~~~~l 86 (121)
T cd04042 24 YVKFKYGG-----KTVYKSKTIYKNLNPVWDEKFTLPIE-DVTQPLYIKVFDYDR-----------GLTDDFMGSAFVDL 86 (121)
T ss_pred eEEEEECC-----EEEEEeeeccCCCCCccceeEEEEec-CCCCeEEEEEEeCCC-----------CCCCcceEEEEEEH
Confidence 46666532 36899999999999999999999864 445799999999995 46899999999999
Q ss_pred cccccccceeEEEeccCCcccccccccCCCCCCCCcccceeeeecee
Q 010107 81 SQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEE 127 (518)
Q Consensus 81 ~~l~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~ 127 (518)
.++........|++|.++ +. .+..|+|++.++.
T Consensus 87 ~~l~~~~~~~~~~~L~~~----------~~----~~~~G~l~l~~~~ 119 (121)
T cd04042 87 STLELNKPTEVKLKLEDP----------NS----DEDLGYISLVVTL 119 (121)
T ss_pred HHcCCCCCeEEEEECCCC----------CC----ccCceEEEEEEEE
Confidence 999988788899999662 11 2557999988765
No 95
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.33 E-value=5.4e-12 Score=110.33 Aligned_cols=82 Identities=22% Similarity=0.338 Sum_probs=68.3
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||.|++.... .+..||+++++|+||+|+++|.+.+..+..+.|+|+|||.|. + ++++||++.++|
T Consensus 24 yv~v~~~~~~---~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~-----------~-~~~~iG~~~~~l 88 (119)
T cd04036 24 YVELWLPTAS---DEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDY-----------V-MDDHLGTVLFDV 88 (119)
T ss_pred EEEEEEcCCC---CccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCC-----------C-CCcccEEEEEEH
Confidence 4666664321 257899999999999999999999876666789999999984 3 789999999999
Q ss_pred cccccccceeEEEeccC
Q 010107 81 SQIVTRKNRSLTLDLVR 97 (518)
Q Consensus 81 ~~l~~~~~~~~~~~L~~ 97 (518)
+++........|++|.+
T Consensus 89 ~~l~~g~~~~~~~~L~~ 105 (119)
T cd04036 89 SKLKLGEKVRVTFSLNP 105 (119)
T ss_pred HHCCCCCcEEEEEECCC
Confidence 99988777889999965
No 96
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.32 E-value=2.2e-11 Score=108.45 Aligned_cols=88 Identities=20% Similarity=0.283 Sum_probs=72.9
Q ss_pred eEEEEEeecCCCcCCCC----------CCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccE
Q 010107 134 TTELILRCSDLDCKDLF----------SRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPL 202 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~----------g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L 202 (518)
+.+.+++|++|+..|.. +.+|||+++++.+ ....+|+++++++||.||| |.+.+. ..+.|
T Consensus 6 l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~-----~~~~kT~~~~~t~~P~Wne~f~~~v~----~~~~l 76 (132)
T cd04014 6 LKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD-----THIGKTSTKPKTNSPVWNEEFTTEVH----NGRNL 76 (132)
T ss_pred EEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC-----EEEeEEeEcCCCCCCCcceeEEEEcC----CCCEE
Confidence 33456899999988863 5799999998842 2457999999999999999 666653 25789
Q ss_pred EEEEEeecCCCCCcceEEEEEechhhhh
Q 010107 203 IIECFNFNSNGKHDLIGKVQKSLADLEK 230 (518)
Q Consensus 203 ~veV~D~d~~~~~d~IG~~~i~l~~L~~ 230 (518)
.|+|||++..+++++||.+.++|.++..
T Consensus 77 ~~~v~d~~~~~~~~~iG~~~i~l~~l~~ 104 (132)
T cd04014 77 ELTVFHDAAIGPDDFVANCTISFEDLIQ 104 (132)
T ss_pred EEEEEeCCCCCCCceEEEEEEEhHHhcc
Confidence 9999999988889999999999999975
No 97
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.32 E-value=1.2e-11 Score=109.29 Aligned_cols=102 Identities=19% Similarity=0.248 Sum_probs=79.8
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||+++.... ....||+++++|+||+|++.|.+.+.. ..+.|.|+|||.|.. ++++|||++.++|
T Consensus 21 yv~v~~~~~----~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~-----------~~~~~lG~~~i~l 84 (126)
T cd08678 21 YCVLEMDEP----PQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKK-----------SDSKFLGLAIVPF 84 (126)
T ss_pred EEEEEECCC----CcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCC-----------CCCceEEEEEEeH
Confidence 577877421 245899999999999999999998863 457899999999953 5799999999999
Q ss_pred cccccccceeEEEeccCCcccccccccCCCCCCCCcccceeeeeceeeec
Q 010107 81 SQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEECIN 130 (518)
Q Consensus 81 ~~l~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~~~~ 130 (518)
+++...+....|++|..+. +. ..+..|+|++.+.+...
T Consensus 85 ~~l~~~~~~~~~~~L~~~~---------~~---~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 85 DELRKNPSGRQIFPLQGRP---------YE---GDSVSGSITVEFLFMEP 122 (126)
T ss_pred HHhccCCceeEEEEecCCC---------CC---CCCcceEEEEEEEEecc
Confidence 9999887778899986520 00 12458999998877654
No 98
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.31 E-value=1.2e-11 Score=109.35 Aligned_cols=96 Identities=18% Similarity=0.265 Sum_probs=74.0
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEe-----CceeEEEEEEEEecCCcccccccccCccCcceeEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQF-----EVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGE 75 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~f-----e~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~ 75 (518)
||.|++.. +..||+++++++||+|+|.|.|.+.. ...+.|.|.|||.|. ++++++||+
T Consensus 23 Yv~v~l~~------~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~-----------~~~d~~iG~ 85 (126)
T cd08682 23 YVIIQLGK------EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL-----------LGLDKFLGQ 85 (126)
T ss_pred eEEEEECC------eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc-----------cCCCceeEE
Confidence 57777632 46799999999999999999998764 245689999999994 467999999
Q ss_pred EEEeccccc--cccceeEEEeccCCcccccccccCCCCCCCCcccceeeeec
Q 010107 76 ATCTLSQIV--TRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHA 125 (518)
Q Consensus 76 ~~~~L~~l~--~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~ 125 (518)
+.++|+++. .......|++|.++. +. ..+.+|+|++++
T Consensus 86 ~~i~l~~l~~~~~~~~~~W~~L~~~~---------~~---~~~~~Gei~l~~ 125 (126)
T cd08682 86 VSIPLNDLDEDKGRRRTRWFKLESKP---------GK---DDKERGEIEVDI 125 (126)
T ss_pred EEEEHHHhhccCCCcccEEEECcCCC---------CC---CccccceEEEEe
Confidence 999999998 344567899996521 10 124579998865
No 99
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.31 E-value=1.3e-11 Score=107.21 Aligned_cols=80 Identities=24% Similarity=0.390 Sum_probs=68.5
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||.|++.. +..||+++++++||.|++.|.+....+..+.|.|+|||.|. ++++++||++.++|
T Consensus 24 yv~v~~~~------~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~-----------~~~~~~iG~~~~~l 86 (116)
T cd08376 24 YVKFRLGN------EKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDT-----------GKKDEFIGRCEIDL 86 (116)
T ss_pred EEEEEECC------EeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCC-----------CCCCCeEEEEEEeH
Confidence 46666632 46899999999999999999998876557899999999985 36799999999999
Q ss_pred cccccccceeEEEeccC
Q 010107 81 SQIVTRKNRSLTLDLVR 97 (518)
Q Consensus 81 ~~l~~~~~~~~~~~L~~ 97 (518)
+++........|++|.+
T Consensus 87 ~~l~~~~~~~~w~~L~~ 103 (116)
T cd08376 87 SALPREQTHSLELELED 103 (116)
T ss_pred HHCCCCCceEEEEEccC
Confidence 99998888899999965
No 100
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.29 E-value=1.7e-11 Score=107.72 Aligned_cols=96 Identities=21% Similarity=0.252 Sum_probs=75.8
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||.|++.. + +++||+++++|+||+|+|.|.+.+. +....|.|.|||.|. ++++++||.+.++|
T Consensus 25 Yv~v~l~~---~--~~~kT~v~~kt~~P~WnE~F~f~v~-~~~~~l~~~v~d~~~-----------~~~~~~iG~~~i~l 87 (121)
T cd08401 25 YCTVNLDQ---E--EVFRTKTVEKSLCPFFGEDFYFEIP-RTFRHLSFYIYDRDV-----------LRRDSVIGKVAIKK 87 (121)
T ss_pred EEEEEECC---c--cEEEeeEEECCCCCccCCeEEEEcC-CCCCEEEEEEEECCC-----------CCCCceEEEEEEEH
Confidence 57777732 2 4799999999999999999999986 334689999999995 46899999999999
Q ss_pred cccccccceeEEEeccCCcccccccccCCCCCCCCcccceeeeece
Q 010107 81 SQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAE 126 (518)
Q Consensus 81 ~~l~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e 126 (518)
+++........|++|+.. +. ..+.+|+|++++.
T Consensus 88 ~~l~~~~~~~~w~~L~~~----------~~---~~~~~G~i~l~~~ 120 (121)
T cd08401 88 EDLHKYYGKDTWFPLQPV----------DA---DSEVQGKVHLELR 120 (121)
T ss_pred HHccCCCCcEeeEEEEcc----------CC---CCcccEEEEEEEE
Confidence 999877677899999651 11 1245799988753
No 101
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.29 E-value=2.2e-11 Score=106.74 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=73.1
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeC-CCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEe
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLN-SLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCT 79 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~-~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~ 79 (518)
||+|.+.. ...||+|+++ ++||+|||+|.|.... ..+.|.|+|||.|. +++|++||++.++
T Consensus 25 Yv~i~lg~------~~~kT~v~~~~~~nP~WNe~F~f~v~~-~~~~l~~~V~d~d~-----------~~~dd~iG~~~i~ 86 (121)
T cd04016 25 YCRIRVGH------AVYETPTAYNGAKNPRWNKTIQCTLPE-GVDSIYIEIFDERA-----------FTMDERIAWTHIT 86 (121)
T ss_pred eEEEEECC------EEEEeEEccCCCCCCccCeEEEEEecC-CCcEEEEEEEeCCC-----------CcCCceEEEEEEE
Confidence 57777733 3559999876 7999999999998763 34689999999994 4689999999999
Q ss_pred cc-ccccccceeEEEeccCCcccccccccCCCCCCCCcccceeeeecee
Q 010107 80 LS-QIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEE 127 (518)
Q Consensus 80 L~-~l~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~ 127 (518)
|. .+........|++|.++ .+ ....|.|++++.|
T Consensus 87 l~~~~~~g~~~~~W~~L~~~-----------~~---~~~~g~i~l~l~y 121 (121)
T cd04016 87 IPESVFNGETLDDWYSLSGK-----------QG---EDKEGMINLVFSY 121 (121)
T ss_pred CchhccCCCCccccEeCcCc-----------cC---CCCceEEEEEEeC
Confidence 96 46655557889999652 11 1456999998754
No 102
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=2.7e-12 Score=126.08 Aligned_cols=192 Identities=16% Similarity=0.204 Sum_probs=143.2
Q ss_pred EeeeeeeCCCCCceeeEEEEEEE-eCce--eEEEEEEEEecCCcccccccccCccCcceeEEEEEeccccccccceeEEE
Q 010107 17 GRTEVVLNSLNPTWITKHIITYQ-FEVV--QTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTL 93 (518)
Q Consensus 17 ~rTevi~~~lNP~f~~~f~~~~~-fe~~--q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~~~~~~~~~ 93 (518)
.||++..|++||.|+++...... .+.. ..+|+.|+|.+. +...+++|+..+.|..|.......+..
T Consensus 132 lr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~-----------~~~~~sqGq~r~~lkKl~p~q~k~f~~ 200 (362)
T KOG1013|consen 132 LRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDK-----------KTHNESQGQSRVSLKKLKPLQRKSFNI 200 (362)
T ss_pred hhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcc-----------cccccCcccchhhhhccChhhcchhhh
Confidence 78999999999999998765432 1112 278899999885 457899999999999887665433332
Q ss_pred eccCCcccccccccCCCCCCCCcccceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEee
Q 010107 94 DLVRREETITPITEESNPSNRPKHCGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCK 173 (518)
Q Consensus 94 ~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~k 173 (518)
.|... +.+. ...+.+.+.+|+|.+++++-+..+.+++.+++|..|..+|.+|-+|||+..++. ++-.....+|
T Consensus 201 cl~~~---lp~~---rad~~~~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~-pdv~~~fkkK 273 (362)
T KOG1013|consen 201 CLEKS---LPSE---RADRDEDEERGAILISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLS-PDVGKKFKKK 273 (362)
T ss_pred hhhcc---CCcc---cccccchhhccceeeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecC-CCcchhhccc
Confidence 22110 0000 000002256899999999988889999999999999999999999999999987 4455677899
Q ss_pred eccccCCCCCceee-eEEe--eeccCCCCccEEEEEEeecCCCCCcceEEEEEechhh
Q 010107 174 TEVLKNETKPTWKS-VFLN--IQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADL 228 (518)
Q Consensus 174 Tevik~tlnP~W~e-f~~~--~~~l~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L 228 (518)
|.+.++|++|.|++ |.+. ...| ....+.|.|||++..+..+++|-+...+...
T Consensus 274 t~~~K~t~~p~fd~~~~~~i~pgdL--a~~kv~lsvgd~~~G~s~d~~GG~~~g~~rr 329 (362)
T KOG1013|consen 274 TQQKKKTLNPEFDEEFFYDIGPGDL--AYKKVALSVGDYDIGKSNDSIGGSMLGGYRR 329 (362)
T ss_pred CcchhccCCccccccccccCCccch--hcceEEEeecccCCCcCccCCCccccccccc
Confidence 99999999999998 3322 2222 2567999999999988899999887765544
No 103
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.28 E-value=2.1e-11 Score=105.40 Aligned_cols=82 Identities=18% Similarity=0.387 Sum_probs=64.7
Q ss_pred EEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEee----
Q 010107 135 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNF---- 209 (518)
Q Consensus 135 i~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~---- 209 (518)
.+.+.+|++|+ +.+||||++++.+. ++...++||+++++|+||+||| |.+.+. ..+.|.+.|||+
T Consensus 2 ~V~V~~A~~L~-----~~sDPYV~l~v~~~-~~~~~~~KTk~i~~TlnPvWnE~F~i~l~----~s~~L~~~v~d~~~~~ 71 (118)
T cd08686 2 NVIVHSAQGFK-----QSANLYCTLEVDSF-GYFVKKAKTRVCRDTTEPNWNEEFEIELE----GSQTLRILCYEKCYSK 71 (118)
T ss_pred EEEEEeCCCCC-----CCCCCEEEEEEcCc-cccceeeeeeeecCCCCCccceEEEEEeC----CCCEEEEEEEEccccc
Confidence 35568899996 56999999987542 3335689999999999999999 766653 267999999998
Q ss_pred ---cCCCCCcceEEEEEech
Q 010107 210 ---NSNGKHDLIGKVQKSLA 226 (518)
Q Consensus 210 ---d~~~~~d~IG~~~i~l~ 226 (518)
|..++|+++|.+.+.|+
T Consensus 72 ~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 72 VKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred ccccccCcccEEEEEEEEEC
Confidence 45678999977766654
No 104
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.27 E-value=1.6e-11 Score=105.99 Aligned_cols=87 Identities=17% Similarity=0.187 Sum_probs=69.8
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccC--CCCccEEEEEEeec
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG--SKDSPLIIECFNFN 210 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~--~~~~~L~veV~D~d 210 (518)
+.+.+++|++|+ .+.+|||+++.+.+ ..++|+++++++||.|+| |.|...... -.+..|.|+|||++
T Consensus 6 l~V~v~~a~~L~----~~~~dpyv~v~~~~------~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~ 75 (111)
T cd04011 6 VRVRVIEARQLV----GGNIDPVVKVEVGG------QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR 75 (111)
T ss_pred EEEEEEEcccCC----CCCCCCEEEEEECC------EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc
Confidence 445578999998 57899999999863 257999999999999999 555542211 02467999999999
Q ss_pred CCCCCcceEEEEEechhhhh
Q 010107 211 SNGKHDLIGKVQKSLADLEK 230 (518)
Q Consensus 211 ~~~~~d~IG~~~i~l~~L~~ 230 (518)
..+++++||++.++++++..
T Consensus 76 ~~~~~~~iG~~~i~l~~v~~ 95 (111)
T cd04011 76 SLRSDTLIGSFKLDVGTVYD 95 (111)
T ss_pred ccccCCccEEEEECCccccC
Confidence 98889999999999999964
No 105
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.26 E-value=2.4e-11 Score=106.21 Aligned_cols=90 Identities=22% Similarity=0.303 Sum_probs=74.8
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||+|++.. +.+||+++++++||+|++.|.+.+.....+.|.|+|||.|. . ++++||++.++|
T Consensus 31 yv~v~~~~------~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~-----------~-~~~~iG~~~i~l 92 (121)
T cd08391 31 YVIVRVGA------QTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDP-----------D-KDDFLGRLSIDL 92 (121)
T ss_pred EEEEEECC------EeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCC-----------C-CCCcEEEEEEEH
Confidence 46676632 68999999999999999999988876667899999999984 3 789999999999
Q ss_pred cccccccceeEEEeccCCcccccccccCCCCCCCCcccceeeeece
Q 010107 81 SQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAE 126 (518)
Q Consensus 81 ~~l~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e 126 (518)
+++........|++|.+ ...|+|++.++
T Consensus 93 ~~l~~~~~~~~w~~L~~------------------~~~G~~~~~~~ 120 (121)
T cd08391 93 GSVEKKGFIDEWLPLED------------------VKSGRLHLKLE 120 (121)
T ss_pred HHhcccCccceEEECcC------------------CCCceEEEEEe
Confidence 99987766789999965 23688888764
No 106
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.25 E-value=3.5e-11 Score=105.77 Aligned_cols=80 Identities=19% Similarity=0.291 Sum_probs=67.3
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||.|+... ...||+++++++||+|+++|.+.+.....+.|.|+|||.|. ++++++||++.++|
T Consensus 24 yv~v~~~~------~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~-----------~~~~~~iG~~~~~l 86 (123)
T cd04025 24 FVRVFYNG------QTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDL-----------VSKNDFLGKVVFSI 86 (123)
T ss_pred eEEEEECC------EEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCC-----------CCCCcEeEEEEEEH
Confidence 45666532 45799999999999999999999876667799999999984 46799999999999
Q ss_pred cccccccceeEEEeccC
Q 010107 81 SQIVTRKNRSLTLDLVR 97 (518)
Q Consensus 81 ~~l~~~~~~~~~~~L~~ 97 (518)
+++........|++|.+
T Consensus 87 ~~l~~~~~~~~w~~L~~ 103 (123)
T cd04025 87 QTLQQAKQEEGWFRLLP 103 (123)
T ss_pred HHcccCCCCCCEEECCC
Confidence 99987766788999865
No 107
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.25 E-value=5.2e-11 Score=105.30 Aligned_cols=100 Identities=18% Similarity=0.234 Sum_probs=79.7
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEe--CceeEEEEEEEEecCCcccccccccCccCcceeEEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQF--EVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATC 78 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~f--e~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~ 78 (518)
||+|+... ...||+++++++||+|++.|.+.+.. +..+.|.|+|||.+. ++++++||++.+
T Consensus 18 yv~v~~~~------~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~-----------~~~d~~iG~~~~ 80 (127)
T cd08373 18 IAKVTFRG------VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK-----------VGRNRLIGSATV 80 (127)
T ss_pred EEEEEECC------EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC-----------CCCCceEEEEEE
Confidence 46677643 35799999999999999999998853 356799999999995 357999999999
Q ss_pred eccccccccceeEEEeccCCcccccccccCCCCCCCCcccceeeeeceeeecC
Q 010107 79 TLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEECINS 131 (518)
Q Consensus 79 ~L~~l~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~~~~~ 131 (518)
+|+++........|++|.++ .+ ...+|+|++.+.+.+..
T Consensus 81 ~l~~l~~~~~~~~~~~L~~~-----------~~---~~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 81 SLQDLVSEGLLEVTEPLLDS-----------NG---RPTGATISLEVSYQPPD 119 (127)
T ss_pred EhhHcccCCceEEEEeCcCC-----------CC---CcccEEEEEEEEEeCCC
Confidence 99999988778889999652 11 12368999988887654
No 108
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.25 E-value=2.7e-11 Score=106.30 Aligned_cols=96 Identities=25% Similarity=0.431 Sum_probs=75.0
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||+|..... .+.+||+++++++||.|++.|.+.+. +..+.|.|+|||.+. .+++++||++.++|
T Consensus 27 yv~v~~~~~----~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~-----------~~~d~~iG~~~~~l 90 (124)
T cd04044 27 YVTFSISNR----RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFND-----------KRKDKLIGTAEFDL 90 (124)
T ss_pred eEEEEECCC----CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCC-----------CCCCceeEEEEEEH
Confidence 456666431 47899999999999999999999887 667899999999985 35799999999999
Q ss_pred ccccccccee-EEEeccCCcccccccccCCCCCCCCcccceeeeeceee
Q 010107 81 SQIVTRKNRS-LTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEEC 128 (518)
Q Consensus 81 ~~l~~~~~~~-~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~~ 128 (518)
.++....... .+.+|.. . .+.+|+|++.+++.
T Consensus 91 ~~l~~~~~~~~~~~~~~~------------~----~k~~G~i~~~l~~~ 123 (124)
T cd04044 91 SSLLQNPEQENLTKNLLR------------N----GKPVGELNYDLRFF 123 (124)
T ss_pred HHhccCccccCcchhhhc------------C----CccceEEEEEEEeC
Confidence 9999776543 4444432 1 25579999998775
No 109
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.24 E-value=1.1e-10 Score=102.99 Aligned_cols=116 Identities=22% Similarity=0.230 Sum_probs=84.8
Q ss_pred eEEEEEeecCCCcCC--CCCCCCcEEEEEEEecCCceeeEeeeccccCCC-CCceee-eEEeeeccCCCCccEEEEEEee
Q 010107 134 TTELILRCSDLDCKD--LFSRNDPFLVISKIVESGTHIPVCKTEVLKNET-KPTWKS-VFLNIQQVGSKDSPLIIECFNF 209 (518)
Q Consensus 134 li~~~i~a~~L~~~d--~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tl-nP~W~e-f~~~~~~l~~~~~~L~veV~D~ 209 (518)
+.+.+++|++|+.++ ..+.+|||+++++.+........++|++++++. ||.|+| |.+.... .....|.|+|||+
T Consensus 4 l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~--~~~~~l~~~V~d~ 81 (128)
T cd00275 4 LTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTV--PELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeC--CCeEEEEEEEEeC
Confidence 445578999999988 688999999999975422135689999988876 999998 6555542 2245799999999
Q ss_pred cCCCCCcceEEEEEechhhhhccCCCceEEeecccccCCCCCccccceEEE
Q 010107 210 NSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFV 260 (518)
Q Consensus 210 d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~~~~k~~~k~~~G~i~l 260 (518)
+.. ++++||++.+++.+|.. + ...+.|.+++... .. .|.|.+
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~--g-~~~~~l~~~~~~~----~~-~~~l~v 123 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQ--G-YRHVPLLDSKGEP----LE-LSTLFV 123 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcC--c-eEEEEecCCCCCC----Cc-ceeEEE
Confidence 987 89999999999999943 2 3455665543211 12 677765
No 110
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.24 E-value=6.5e-11 Score=103.72 Aligned_cols=94 Identities=18% Similarity=0.259 Sum_probs=73.0
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCC
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 212 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~ 212 (518)
+.+.+++|++|+.++. .|||+++...+ ...+|.+++++ ||.||| |.|.... .+..|.|+|||++..
T Consensus 4 L~V~Vv~Ar~L~~~~~---~dPYV~Ik~g~------~k~kT~v~~~~-nP~WnE~F~F~~~~---~~~~L~v~V~dkd~~ 70 (127)
T cd08394 4 LCVLVKKAKLDGAPDK---FNTYVTLKVQN------VKSTTIAVRGS-QPCWEQDFMFEINR---LDLGLVIELWNKGLI 70 (127)
T ss_pred EEEEEEEeeCCCCCCC---CCCeEEEEECC------EEeEeeECCCC-CCceeeEEEEEEcC---CCCEEEEEEEeCCCc
Confidence 5566799999987663 48999998853 36789888884 999999 6666643 355699999999865
Q ss_pred CCCcceEEEEEechhhhhccCC--CceEEee
Q 010107 213 GKHDLIGKVQKSLADLEKLHSS--GQGQNLF 241 (518)
Q Consensus 213 ~~~d~IG~~~i~l~~L~~~~~~--~~~~~l~ 241 (518)
++|+||++.++|.++...... ..+|.|.
T Consensus 71 -~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 71 -WDTLVGTVWIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred -CCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence 899999999999999754433 4566664
No 111
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.24 E-value=4.3e-11 Score=105.72 Aligned_cols=98 Identities=17% Similarity=0.250 Sum_probs=75.0
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||+|++.. ..+||+++++++||.|++.|.+.+.....+.|.|+|||.|. ++++++||++.++|
T Consensus 27 yv~v~~~~------~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~-----------~~~~~~lG~~~i~l 89 (128)
T cd04024 27 YAILSVGA------QRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDR-----------FAGKDYLGEFDIAL 89 (128)
T ss_pred eEEEEECC------EEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCC-----------CCCCCcceEEEEEH
Confidence 56777632 46899999999999999999998876567899999999994 35799999999999
Q ss_pred ccccc---ccceeEEEeccCCcccccccccCCCCCCCCcccceeeeece
Q 010107 81 SQIVT---RKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAE 126 (518)
Q Consensus 81 ~~l~~---~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e 126 (518)
+++.. ......|++|.++ ..+ .+....|+|++++.
T Consensus 90 ~~~~~~~~~~~~~~w~~L~~~----------~~~-~~~~~~G~i~l~~~ 127 (128)
T cd04024 90 EEVFADGKTGQSDKWITLKST----------RPG-KTSVVSGEIHLQFS 127 (128)
T ss_pred HHhhcccccCccceeEEccCc----------ccC-ccccccceEEEEEE
Confidence 99983 2335788998662 000 02245799888764
No 112
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.24 E-value=2e-11 Score=106.44 Aligned_cols=92 Identities=13% Similarity=0.219 Sum_probs=73.4
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeC-CCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEe
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLN-SLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCT 79 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~-~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~ 79 (518)
||+|++.. +..||+++++ ++||+|++.|.|.+..+..+.|.|+|||.+.. + +++||++.++
T Consensus 25 yv~v~~~~------~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-----------~-~~~iG~~~~~ 86 (118)
T cd08681 25 YCVLRIGG------VTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR-----------K-PDLIGDTEVD 86 (118)
T ss_pred eEEEEECC------CccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC-----------C-CcceEEEEEe
Confidence 46666643 4689999864 79999999999998876678999999998842 3 8999999999
Q ss_pred ccccccccceeEEEeccCCcccccccccCCCCCCCCcccceeeeece
Q 010107 80 LSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAE 126 (518)
Q Consensus 80 L~~l~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e 126 (518)
|+++........|++|..+ .+..|+|++++.
T Consensus 87 l~~~~~~~~~~~w~~L~~~----------------~~~~G~i~l~l~ 117 (118)
T cd08681 87 LSPALKEGEFDDWYELTLK----------------GRYAGEVYLELT 117 (118)
T ss_pred cHHHhhcCCCCCcEEeccC----------------CcEeeEEEEEEE
Confidence 9999876667888888551 245799988764
No 113
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.23 E-value=4.3e-11 Score=107.30 Aligned_cols=68 Identities=24% Similarity=0.381 Sum_probs=58.3
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||+|++.. ...||+++++|+||.|+++|.|.+.....+.|.|+|||.|. ++++++||++.++|
T Consensus 39 Yv~v~~~~------~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~-----------~~~d~~lG~~~i~l 101 (136)
T cd08375 39 YCEVSMGS------QEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF-----------FSPDDFLGRTEIRV 101 (136)
T ss_pred EEEEEECC------EeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC-----------CCCCCeeEEEEEEH
Confidence 56777632 47899999999999999999998875556799999999994 46799999999999
Q ss_pred ccccc
Q 010107 81 SQIVT 85 (518)
Q Consensus 81 ~~l~~ 85 (518)
.+++.
T Consensus 102 ~~l~~ 106 (136)
T cd08375 102 ADILK 106 (136)
T ss_pred HHhcc
Confidence 99986
No 114
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.23 E-value=4.1e-10 Score=126.16 Aligned_cols=98 Identities=24% Similarity=0.401 Sum_probs=79.8
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCC
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 212 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~ 212 (518)
+-+...+|.||+..|.+|.|||||++++.++ .+|+|+++++|+||+||| +.+++. ......+.+.|+|||..
T Consensus 1042 l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k-----~vyktkv~KktlNPvwNEe~~i~v~--~r~~D~~~i~v~Dwd~~ 1114 (1227)
T COG5038 1042 LTIMLRSGENLPSSDENGYSDPFVKLFLNEK-----SVYKTKVVKKTLNPVWNEEFTIEVL--NRVKDVLTINVNDWDSG 1114 (1227)
T ss_pred EEEEEeccCCCcccccCCCCCceEEEEecce-----ecccccchhccCCCCccccceEeee--ccccceEEEEEeecccC
Confidence 4445678999999999999999999998642 499999999999999999 554443 33467899999999999
Q ss_pred CCCcceEEEEEechhhhhccCCCceEEe
Q 010107 213 GKHDLIGKVQKSLADLEKLHSSGQGQNL 240 (518)
Q Consensus 213 ~~~d~IG~~~i~l~~L~~~~~~~~~~~l 240 (518)
.+++.||.+.++|..|.. +....+.+
T Consensus 1115 ~knd~lg~~~idL~~l~~--~~~~n~~i 1140 (1227)
T COG5038 1115 EKNDLLGTAEIDLSKLEP--GGTTNSNI 1140 (1227)
T ss_pred CCccccccccccHhhcCc--CCccceee
Confidence 999999999999999954 33334444
No 115
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.22 E-value=6.2e-11 Score=105.57 Aligned_cols=102 Identities=18% Similarity=0.330 Sum_probs=77.4
Q ss_pred CEEEEEEcC-CCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEe
Q 010107 1 MLVVYMKAR-DGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCT 79 (518)
Q Consensus 1 ~~vv~~~~~-~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~ 79 (518)
||.|++... .+.+....||+++++++||.|+++|.+.+... .+.|.|+|||.|. ++++++||++.++
T Consensus 24 yv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~-----------~~~~~~iG~~~i~ 91 (133)
T cd04033 24 YVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENR-----------LTRDDFLGQVEVP 91 (133)
T ss_pred EEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCC-----------CCCCCeeEEEEEE
Confidence 577777653 34455578999999999999999999987643 4689999999984 4679999999999
Q ss_pred ccccccccc------eeEEEeccCCcccccccccCCCCCCCCcccceeeeecee
Q 010107 80 LSQIVTRKN------RSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEE 127 (518)
Q Consensus 80 L~~l~~~~~------~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~ 127 (518)
++++..... ...|++|..+ .+ ..+.+|+|++++.+
T Consensus 92 l~~l~~~~~~~~~~~~~~~~~l~~~-----------~~--~~~~~G~l~~~~~~ 132 (133)
T cd04033 92 LNNLPTETPGNERRYTFKDYLLRPR-----------SS--KSRVKGHLRLYMAY 132 (133)
T ss_pred HHHCCCcCccccccccchheeeeec-----------CC--CCcceeEEEEEEee
Confidence 999986532 3467788641 11 12558999988765
No 116
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.22 E-value=7.6e-11 Score=103.18 Aligned_cols=86 Identities=15% Similarity=0.063 Sum_probs=68.4
Q ss_pred CEEEEEEc-CCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeC---ceeEEEEEEEEecCCcccccccccCccCcceeEEE
Q 010107 1 MLVVYMKA-RDGALVEVGRTEVVLNSLNPTWITKHIITYQFE---VVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEA 76 (518)
Q Consensus 1 ~~vv~~~~-~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe---~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~ 76 (518)
||.|++.+ ..+.-.+..||+++++++||+|||+|.|....+ ....|+|.|||+|. .+++++||++
T Consensus 23 YVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~-----------~~~dd~IG~~ 91 (120)
T cd08395 23 FVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCF-----------ARDDRLVGVT 91 (120)
T ss_pred EEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecc-----------cCCCCEEEEE
Confidence 57777753 111112467999999999999999999998643 33579999999984 3579999999
Q ss_pred EEeccccccccceeEEEeccC
Q 010107 77 TCTLSQIVTRKNRSLTLDLVR 97 (518)
Q Consensus 77 ~~~L~~l~~~~~~~~~~~L~~ 97 (518)
.++|.++........|++|..
T Consensus 92 ~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 92 VLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred EEEHHHCcCCCcEEEEEECcC
Confidence 999999998888889999955
No 117
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.20 E-value=1.2e-10 Score=102.77 Aligned_cols=83 Identities=16% Similarity=0.215 Sum_probs=66.3
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||.|+.. +.+.+++||+++++++||.|+++|.+.+..+..+.|.|+|||.|. ++++++||++.++|
T Consensus 25 yv~v~~~---~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~-----------~~~~~~iG~~~i~l 90 (126)
T cd04043 25 YVTLVDT---NGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSF-----------VGKHDLCGRASLKL 90 (126)
T ss_pred eEEEEEC---CCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCC-----------CCCCceEEEEEEec
Confidence 4666653 223578999999999999999999999876666799999999994 35799999999999
Q ss_pred cccccc---cceeEEEeccC
Q 010107 81 SQIVTR---KNRSLTLDLVR 97 (518)
Q Consensus 81 ~~l~~~---~~~~~~~~L~~ 97 (518)
+++... .....|++|..
T Consensus 91 ~~~~~~~~~~~~~~w~~l~~ 110 (126)
T cd04043 91 DPKRFGDDGLPREIWLDLDT 110 (126)
T ss_pred CHHHcCCCCCCceEEEEcCC
Confidence 987533 24568998844
No 118
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.20 E-value=5e-11 Score=104.70 Aligned_cols=94 Identities=21% Similarity=0.261 Sum_probs=73.0
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||.|++.. +.+||+++++++||+|+|.|.|.+.....+.|.|+|||.|. + ++++||++.++|
T Consensus 20 yv~v~l~~------~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~-----------~-~~~~lG~~~i~l 81 (121)
T cd08378 20 VVEVKLGN------YKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDK-----------A-KDDFLGGVCFDL 81 (121)
T ss_pred EEEEEECC------ccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCC-----------C-cCceeeeEEEEh
Confidence 46677642 47899999999999999999998765466799999999984 2 689999999999
Q ss_pred ccccccc-----ceeEEEeccCCcccccccccCCCCCCCCcccceeeeece
Q 010107 81 SQIVTRK-----NRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAE 126 (518)
Q Consensus 81 ~~l~~~~-----~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e 126 (518)
+++.... ....|++|..+ . ..+.+|+|.+++.
T Consensus 82 ~~l~~~~~~~~~~~~~W~~L~~~-----------~---~~~~~G~i~l~~~ 118 (121)
T cd08378 82 SEVPTRVPPDSPLAPQWYRLEDK-----------K---GGRVGGELMLAVW 118 (121)
T ss_pred HhCcCCCCCCCCCCcceEEccCC-----------C---CCccceEEEEEEE
Confidence 9987532 24579999662 1 1255799887753
No 119
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.20 E-value=2.8e-11 Score=104.94 Aligned_cols=82 Identities=17% Similarity=0.230 Sum_probs=65.1
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCcee--EEEEEEEEecCCcccccccccCccCcceeEEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQ--TLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATC 78 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q--~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~ 78 (518)
||-|++-..+++ ...||+|.++|+||+|||+|.|.+..++.+ +|.|.|||.|. ++++|+||++.+
T Consensus 35 YVKv~L~~~~k~--~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Dr-----------fs~~d~IG~v~l 101 (118)
T cd08677 35 YISGCVSVSEGQ--KEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDR-----------FSRHSTLGELRL 101 (118)
T ss_pred EEEEEEcCCcCc--cEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCC-----------CCCCceEEEEEE
Confidence 455666432222 344999999999999999999998777654 89999999995 578999999999
Q ss_pred eccccccccceeEEEec
Q 010107 79 TLSQIVTRKNRSLTLDL 95 (518)
Q Consensus 79 ~L~~l~~~~~~~~~~~L 95 (518)
+|+++....+...|.+|
T Consensus 102 ~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 102 KLADVSMMLGAAQWVDL 118 (118)
T ss_pred ccccccCCccccchhcC
Confidence 99998666677777654
No 120
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.19 E-value=1e-10 Score=102.60 Aligned_cols=95 Identities=21% Similarity=0.322 Sum_probs=73.1
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||+|++.+ ..++||+++++++||+|++.|.+.+. +..+.|.|+|||.|. ++++++||++.+++
T Consensus 24 Yv~v~~~~-----~~~~kT~v~~~t~nP~Wne~f~~~~~-~~~~~l~v~v~d~~~-----------~~~d~~iG~~~~~~ 86 (121)
T cd04054 24 YCIVKVDN-----EVIIRTATVWKTLNPFWGEEYTVHLP-PGFHTVSFYVLDEDT-----------LSRDDVIGKVSLTR 86 (121)
T ss_pred eEEEEECC-----EeeeeeeeEcCCCCCcccceEEEeeC-CCCCEEEEEEEECCC-----------CCCCCEEEEEEEcH
Confidence 57777743 35799999999999999999999875 334789999999994 46899999999999
Q ss_pred cccccc-cceeEEEeccCCcccccccccCCCCCCCCcccceeeeec
Q 010107 81 SQIVTR-KNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHA 125 (518)
Q Consensus 81 ~~l~~~-~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~ 125 (518)
.++... .....|++|.+. .+ .....|+|++.+
T Consensus 87 ~~~~~~~~~~~~W~~L~~~-----------~~--~~~~~G~i~l~~ 119 (121)
T cd04054 87 EVISAHPRGIDGWMNLTEV-----------DP--DEEVQGEIHLEL 119 (121)
T ss_pred HHhccCCCCCCcEEECeee-----------CC--CCccccEEEEEE
Confidence 988754 346789999651 11 114578887764
No 121
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.19 E-value=9.1e-11 Score=100.98 Aligned_cols=75 Identities=31% Similarity=0.501 Sum_probs=62.3
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEE----eCceeEEEEEEEEecCCcccccccccCccCcceeEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQ----FEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEA 76 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~----fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~ 76 (518)
||+|+....+++|..+.||+++++++||+|+ .|.+.+. .+..+.|+|+|||+|. .+++++||++
T Consensus 24 yv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~-----------~~~d~~iG~~ 91 (110)
T cd04047 24 FLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS-----------SGKHDLIGEF 91 (110)
T ss_pred eEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC-----------CCCCcEEEEE
Confidence 6888887655588999999999999999999 6777642 2236799999999995 4689999999
Q ss_pred EEecccccccc
Q 010107 77 TCTLSQIVTRK 87 (518)
Q Consensus 77 ~~~L~~l~~~~ 87 (518)
+++|++|....
T Consensus 92 ~~~l~~l~~~~ 102 (110)
T cd04047 92 ETTLDELLKSS 102 (110)
T ss_pred EEEHHHHhcCC
Confidence 99999998544
No 122
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.19 E-value=1.8e-10 Score=99.57 Aligned_cols=96 Identities=19% Similarity=0.189 Sum_probs=72.8
Q ss_pred CCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCCCCCcceEEEEEechh
Q 010107 149 LFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLAD 227 (518)
Q Consensus 149 ~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~ 227 (518)
.+|++|||++++..+ ...++|++++++.||.||+ |.+.+.. ...+.|.|+|||++.. ++++||.+.++|.+
T Consensus 9 ~~G~~dPYv~v~v~~-----~~~~kT~v~~~t~nP~Wne~f~f~v~~--~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~ 80 (111)
T cd04052 9 KTGLLSPYAELYLNG-----KLVYTTRVKKKTNNPSWNASTEFLVTD--RRKSRVTVVVKDDRDR-HDPVLGSVSISLND 80 (111)
T ss_pred cCCCCCceEEEEECC-----EEEEEEeeeccCCCCccCCceEEEecC--cCCCEEEEEEEECCCC-CCCeEEEEEecHHH
Confidence 678999999999842 2468999999999999999 6655532 2357799999999988 89999999999999
Q ss_pred hhhccCC-CceEEeecccccCCCCCccccceEEEEE
Q 010107 228 LEKLHSS-GQGQNLFLSTAAGNNNHKILNSQLFVDK 262 (518)
Q Consensus 228 L~~~~~~-~~~~~l~n~~~~~k~~~k~~~G~i~l~~ 262 (518)
+...... ..++.|.. ++ .|+|.+..
T Consensus 81 l~~~~~~~~~w~~L~~-----~~-----~G~i~~~~ 106 (111)
T cd04052 81 LIDATSVGQQWFPLSG-----NG-----QGRIRISA 106 (111)
T ss_pred HHhhhhccceeEECCC-----CC-----CCEEEEEE
Confidence 9643222 34555543 11 79998753
No 123
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.18 E-value=3.6e-11 Score=106.23 Aligned_cols=84 Identities=20% Similarity=0.243 Sum_probs=67.0
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCce--eEEEEEEEEecCCcccccccccCccCcceeEEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVV--QTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATC 78 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~--q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~ 78 (518)
||.||+.. ++.+....||+|+++|+||+|+|+|.|.+..++. ..|+|+|||.|. ++++++||++.+
T Consensus 40 yVkv~l~p-~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~-----------~~~~~~iG~~~i 107 (125)
T cd08393 40 YVKTYLLP-DKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDS-----------LGRNSFLGEVEV 107 (125)
T ss_pred EEEEEEEc-CCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCC-----------CCCCcEeEEEEE
Confidence 45566654 2333456799999999999999999998764433 489999999984 468999999999
Q ss_pred eccccccccceeEEEecc
Q 010107 79 TLSQIVTRKNRSLTLDLV 96 (518)
Q Consensus 79 ~L~~l~~~~~~~~~~~L~ 96 (518)
+|+++..+.....|++|.
T Consensus 108 ~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 108 DLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred ecCccccCCCCcceEECc
Confidence 999998777778899873
No 124
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.18 E-value=8.3e-11 Score=104.06 Aligned_cols=96 Identities=17% Similarity=0.214 Sum_probs=72.5
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCc---eeEEEEEEEEecCCcccccccccCcc-CcceeEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV---VQTLVFRIYDVDTQFHNVDVKTLKLV-EQQFLGEA 76 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~---~q~L~~~VyD~D~~~~~~~~~~~~l~-~~d~iG~~ 76 (518)
||+|++.. +..||+++++++||+|++.|.|.+.... ...|+|+|||.+. +. +++|||++
T Consensus 24 yv~v~~~~------~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~-----------~~~~d~~lG~v 86 (127)
T cd04022 24 YVELDFDG------QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR-----------SGRRRSFLGRV 86 (127)
T ss_pred EEEEEECC------EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC-----------CcCCCCeeeEE
Confidence 46776643 3579999999999999999999886432 3589999999884 23 79999999
Q ss_pred EEeccccc-cccceeEEEeccCCcccccccccCCCCCCCCcccceeeeece
Q 010107 77 TCTLSQIV-TRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAE 126 (518)
Q Consensus 77 ~~~L~~l~-~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e 126 (518)
.++|+++. .......|++|..+ +. ..+.+|+|.+++.
T Consensus 87 ~i~l~~l~~~~~~~~~w~~L~~~----------~~---~~~~~G~l~l~~~ 124 (127)
T cd04022 87 RISGTSFVPPSEAVVQRYPLEKR----------GL---FSRVRGEIGLKVY 124 (127)
T ss_pred EEcHHHcCCCCCccceEeEeeeC----------CC---CCCccEEEEEEEE
Confidence 99999998 34556789999652 11 1245788887753
No 125
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.18 E-value=1.3e-10 Score=100.46 Aligned_cols=94 Identities=15% Similarity=0.151 Sum_probs=75.1
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||+|++.+ ...+||.++++++||+|++.|.+.......+.|.|+|||.+. + ++++||++.++|
T Consensus 16 Yv~v~v~~-----~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~-----------~-~d~~iG~~~v~L 78 (111)
T cd04052 16 YAELYLNG-----KLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRD-----------R-HDPVLGSVSISL 78 (111)
T ss_pred eEEEEECC-----EEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCC-----------C-CCCeEEEEEecH
Confidence 67888843 257999999999999999999998764456789999999883 4 799999999999
Q ss_pred cccccc-cceeEEEeccCCcccccccccCCCCCCCCcccceeeeeceeee
Q 010107 81 SQIVTR-KNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEECI 129 (518)
Q Consensus 81 ~~l~~~-~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~~~ 129 (518)
.++... .....|++|.+ ...|+|++++.+.+
T Consensus 79 ~~l~~~~~~~~~w~~L~~------------------~~~G~i~~~~~~~p 110 (111)
T cd04052 79 NDLIDATSVGQQWFPLSG------------------NGQGRIRISALWKP 110 (111)
T ss_pred HHHHhhhhccceeEECCC------------------CCCCEEEEEEEEec
Confidence 999754 33478999854 22699998877643
No 126
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.17 E-value=1.8e-10 Score=101.76 Aligned_cols=85 Identities=16% Similarity=0.217 Sum_probs=66.4
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||+|.+.. +..||+++++++||+|+|+|.|... +....|.|+|||.|..+.. ....++++||++.++|
T Consensus 27 Yv~i~~g~------~~~rTk~~~~~~nP~WnE~f~f~v~-~~~~~l~v~V~d~d~~~~~-----~~~~~dd~lG~~~i~l 94 (126)
T cd08379 27 YCVAKYGP------KWVRTRTVEDSSNPRWNEQYTWPVY-DPCTVLTVGVFDNSQSHWK-----EAVQPDVLIGKVRIRL 94 (126)
T ss_pred eEEEEECC------EEeEcCcccCCCCCcceeEEEEEec-CCCCEEEEEEEECCCcccc-----ccCCCCceEEEEEEEH
Confidence 57777632 4669999999999999999999875 3345899999998852100 0124799999999999
Q ss_pred cccccccceeEEEeccC
Q 010107 81 SQIVTRKNRSLTLDLVR 97 (518)
Q Consensus 81 ~~l~~~~~~~~~~~L~~ 97 (518)
+++........|++|..
T Consensus 95 ~~l~~~~~~~~~~~L~~ 111 (126)
T cd08379 95 STLEDDRVYAHSYPLLS 111 (126)
T ss_pred HHccCCCEEeeEEEeEe
Confidence 99988777788999965
No 127
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.16 E-value=2.3e-10 Score=103.88 Aligned_cols=90 Identities=19% Similarity=0.135 Sum_probs=69.5
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEE-------------eC--ceeEEEEEEEEecCCccccccccc
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQ-------------FE--VVQTLVFRIYDVDTQFHNVDVKTL 65 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~-------------fe--~~q~L~~~VyD~D~~~~~~~~~~~ 65 (518)
||.|++.....+ ....||+++++|+||+|+|+|.|+.. .+ ....|.|.|||.+.
T Consensus 22 YV~V~l~~~~~k-~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~---------- 90 (148)
T cd04010 22 YASVTLIYSNKK-QDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASM---------- 90 (148)
T ss_pred eEEEEEeCCccc-CcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCC----------
Confidence 578887652211 24679999999999999999999874 11 23579999999984
Q ss_pred CccCcceeEEEEEeccccccc-cceeEEEeccCCcccc
Q 010107 66 KLVEQQFLGEATCTLSQIVTR-KNRSLTLDLVRREETI 102 (518)
Q Consensus 66 ~l~~~d~iG~~~~~L~~l~~~-~~~~~~~~L~~~~~~i 102 (518)
+++++|||++.++|.++... .....|++|..+.+.-
T Consensus 91 -~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~ 127 (148)
T cd04010 91 -GGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKS 127 (148)
T ss_pred -CCCCceeEEEEEecccccccCCcCcceeecCCccccc
Confidence 36799999999999999876 5678899997754333
No 128
>PLN03008 Phospholipase D delta
Probab=99.16 E-value=2e-10 Score=126.74 Aligned_cols=99 Identities=18% Similarity=0.306 Sum_probs=76.3
Q ss_pred CCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCCCCCcceEEEEEechhh
Q 010107 150 FSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADL 228 (518)
Q Consensus 150 ~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L 228 (518)
.++||||++|.+.. ..+.||+++++++||+||| |.|++.. ....|.|+|||+|..+ +++||++.+++.+|
T Consensus 74 ~~tSDPYV~I~Lg~-----~rv~RTrVi~n~~NPvWNE~F~f~vah---~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L 144 (868)
T PLN03008 74 VITSDPYVTVVVPQ-----ATLARTRVLKNSQEPLWDEKFNISIAH---PFAYLEFQVKDDDVFG-AQIIGTAKIPVRDI 144 (868)
T ss_pred cCCCCceEEEEECC-----cceeeEEeCCCCCCCCcceeEEEEecC---CCceEEEEEEcCCccC-CceeEEEEEEHHHc
Confidence 56899999999842 3477999999999999999 7777653 3568999999999997 58999999999999
Q ss_pred hhccCCCceEEeecccccCCCCCccccceEEEE
Q 010107 229 EKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 261 (518)
Q Consensus 229 ~~~~~~~~~~~l~n~~~~~k~~~k~~~G~i~l~ 261 (518)
........+++|++...+.. +. .|.|++.
T Consensus 145 ~~Ge~vd~Wl~Ll~~~~kp~---k~-~~kl~v~ 173 (868)
T PLN03008 145 ASGERISGWFPVLGASGKPP---KA-ETAIFID 173 (868)
T ss_pred CCCCceEEEEEccccCCCCC---CC-CcEEEEE
Confidence 75433446777777654321 22 6777774
No 129
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.16 E-value=1.4e-10 Score=102.19 Aligned_cols=81 Identities=20% Similarity=0.309 Sum_probs=64.6
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||+|++.+ .+++||+++++++||.|++.|.+.+.. .+.|.|+|||.+... -.+++|||++.+++
T Consensus 24 yv~v~~~~-----~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~---------~~~d~~lG~~~i~l 87 (123)
T cd08382 24 FAVITVDG-----GQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFK---------KKDQGFLGCVRIRA 87 (123)
T ss_pred EEEEEECC-----ccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCC---------CCCCceEeEEEEEH
Confidence 57777732 368899999999999999999999864 679999999998531 01268999999999
Q ss_pred cccccccc-eeEEEeccC
Q 010107 81 SQIVTRKN-RSLTLDLVR 97 (518)
Q Consensus 81 ~~l~~~~~-~~~~~~L~~ 97 (518)
.+++...+ ...|++|+.
T Consensus 88 ~~l~~~~~~~~~~~~l~~ 105 (123)
T cd08382 88 NAVLPLKDTGYQRLDLRK 105 (123)
T ss_pred HHccccCCCccceeEeec
Confidence 99986553 367888855
No 130
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.15 E-value=1.6e-10 Score=100.14 Aligned_cols=81 Identities=26% Similarity=0.386 Sum_probs=70.0
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||+|++.+ .+++||+++++++||+|+++|.+.+..+..+.|.|+|||.+. .+++++||++.+++
T Consensus 23 yv~v~~~~-----~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~-----------~~~~~~iG~~~~~l 86 (115)
T cd04040 23 FVKFYLNG-----EKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDR-----------GGKDDLLGSAYIDL 86 (115)
T ss_pred eEEEEECC-----CcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCC-----------CCCCCceEEEEEEH
Confidence 56777743 357999999999999999999999886667899999999995 35799999999999
Q ss_pred cccccccceeEEEeccC
Q 010107 81 SQIVTRKNRSLTLDLVR 97 (518)
Q Consensus 81 ~~l~~~~~~~~~~~L~~ 97 (518)
.++........|++|..
T Consensus 87 ~~l~~~~~~~~~~~L~~ 103 (115)
T cd04040 87 SDLEPEETTELTLPLDG 103 (115)
T ss_pred HHcCCCCcEEEEEECcC
Confidence 99998888899999965
No 131
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.15 E-value=3.3e-10 Score=100.18 Aligned_cols=100 Identities=19% Similarity=0.242 Sum_probs=76.4
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||.|++.+ .+++||++ ++++||.|+|.|.++......+.|.|.|||.|. .+++++||++.++|
T Consensus 25 Yv~v~l~~-----~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~-----------~~~d~~iG~v~i~l 87 (126)
T cd08400 25 YCVISLNE-----VKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAK-----------RSKDSEIAEVTVQL 87 (126)
T ss_pred eEEEEECC-----EeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCC-----------CCCCCeEEEEEEEH
Confidence 57777743 25689997 568999999999987544444689999999984 46899999999999
Q ss_pred cccccccceeEEEeccCCcccccccccCCCCCCCCcccceeeeeceeee
Q 010107 81 SQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEECI 129 (518)
Q Consensus 81 ~~l~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~~~ 129 (518)
.++........|++|... +.. ..+..|+|++++.+..
T Consensus 88 ~~l~~~~~~~~W~~L~~~----------~~~--~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 88 SKLQNGQETDEWYPLSSA----------SPL--KGGEWGSLRIRARYSH 124 (126)
T ss_pred hHccCCCcccEeEEcccC----------CCC--CCCcCcEEEEEEEEEc
Confidence 999877667889999652 100 1245799999987753
No 132
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.15 E-value=1e-10 Score=103.25 Aligned_cols=83 Identities=19% Similarity=0.269 Sum_probs=67.7
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCc--eeEEEEEEEEecCCcccccccccCccCcceeEEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATC 78 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~--~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~ 78 (518)
||.|++.. ++......||+++++++||+|+|+|.|....+. ...|.|.|||.|. ++++++||++.+
T Consensus 40 yVkv~l~p-~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~-----------~~~~~~lG~~~i 107 (125)
T cd04029 40 YVKTYLLP-DKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDR-----------FGRNTFLGEVEI 107 (125)
T ss_pred EEEEEEEc-CCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC-----------CCCCcEEEEEEE
Confidence 46677754 333445679999999999999999999875433 3479999999984 468999999999
Q ss_pred eccccccccceeEEEec
Q 010107 79 TLSQIVTRKNRSLTLDL 95 (518)
Q Consensus 79 ~L~~l~~~~~~~~~~~L 95 (518)
+|+++........|++|
T Consensus 108 ~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 108 PLDSWNFDSQHEECLPL 124 (125)
T ss_pred eCCcccccCCcccEEEC
Confidence 99999888888899987
No 133
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.15 E-value=1.2e-10 Score=102.42 Aligned_cols=82 Identities=15% Similarity=0.228 Sum_probs=67.6
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCc--eeEEEEEEEEecCCcccccccccCccCcceeEEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATC 78 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~--~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~ 78 (518)
||.|++..... .++||+++++++||+|+|+|.+.+..+. .+.|+|+|||.|. ++++++||++.+
T Consensus 40 yv~v~l~~~~~---~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~-----------~~~~~~iG~~~i 105 (124)
T cd08387 40 YCKVRLLPDRS---NTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ-----------FSRDECIGVVEL 105 (124)
T ss_pred eEEEEEecCCC---CcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC-----------CCCCceeEEEEE
Confidence 57777743222 4789999999999999999999876543 4589999999984 468999999999
Q ss_pred eccccccccceeEEEecc
Q 010107 79 TLSQIVTRKNRSLTLDLV 96 (518)
Q Consensus 79 ~L~~l~~~~~~~~~~~L~ 96 (518)
+|+++........|++|+
T Consensus 106 ~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 106 PLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred ecccccCCCCcceEEECc
Confidence 999998777888999885
No 134
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.13 E-value=1.2e-10 Score=102.92 Aligned_cols=85 Identities=21% Similarity=0.255 Sum_probs=69.2
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCce--eEEEEEEEEecCCcccccccccCccCcceeEEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVV--QTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATC 78 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~--q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~ 78 (518)
||.|++.. ++++....||+++++++||+|+|+|.+.+..+.. ..|.|.|||.+.. ..+++++||++++
T Consensus 40 yv~v~l~~-~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~---------~~~~~~~iG~~~i 109 (127)
T cd04030 40 YVRLYLLP-DKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSF---------LSREKKLLGQVLI 109 (127)
T ss_pred eEEEEEEc-CCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcc---------cCCCCceEEEEEE
Confidence 56777754 4446789999999999999999999999865533 4899999998842 0157999999999
Q ss_pred eccccccccceeEEEec
Q 010107 79 TLSQIVTRKNRSLTLDL 95 (518)
Q Consensus 79 ~L~~l~~~~~~~~~~~L 95 (518)
+|++|........|++|
T Consensus 110 ~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 110 DLSDLDLSKGFTQWYDL 126 (127)
T ss_pred ecccccccCCccceEEC
Confidence 99999887777888887
No 135
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.13 E-value=4.8e-10 Score=103.15 Aligned_cols=97 Identities=23% Similarity=0.321 Sum_probs=74.6
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||+|++.. .+++||+++++++||+|+|.|.+... +..+.|.|.|||.|. + .+++||++.++|
T Consensus 61 Yv~V~l~~-----~~~~rT~v~~~~~nP~WnE~F~~~~~-~~~~~l~~~V~d~d~-----------~-~~~~IG~~~i~l 122 (158)
T cd04015 61 YATVDLAG-----ARVARTRVIENSENPVWNESFHIYCA-HYASHVEFTVKDNDV-----------V-GAQLIGRAYIPV 122 (158)
T ss_pred EEEEEECC-----eEeeEEEEeCCCCCCccceEEEEEcc-CCCCEEEEEEEeCCC-----------c-CCcEEEEEEEEh
Confidence 56677632 25799999999999999999998764 455789999999884 2 468999999999
Q ss_pred cccccccceeEEEeccCCcccccccccCCCCCCCCcccceeeeecee
Q 010107 81 SQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEE 127 (518)
Q Consensus 81 ~~l~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~ 127 (518)
+++........|++|.+.. +. ..+..|+|++++.+
T Consensus 123 ~~l~~g~~~~~w~~L~~~~---------~~---~~~~~~~l~v~~~f 157 (158)
T cd04015 123 EDLLSGEPVEGWLPILDSN---------GK---PPKPGAKIRVSLQF 157 (158)
T ss_pred HHccCCCCcceEEECcCCC---------CC---CCCCCCEEEEEEEE
Confidence 9998777778899996510 11 11345788888764
No 136
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.12 E-value=2.3e-10 Score=100.38 Aligned_cols=82 Identities=21% Similarity=0.314 Sum_probs=67.8
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCcee--EEEEEEEEecCCcccccccccCccCcceeEEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQ--TLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATC 78 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q--~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~ 78 (518)
||.|++...+. +.+||+++++++||+|++.|.+.+..+..+ .|+|+|||.+. .+++++||++.+
T Consensus 39 yV~v~l~~~~~---~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~-----------~~~~~~iG~~~i 104 (123)
T cd08390 39 FVKVCLLPDER---RSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR-----------FSRHCIIGHVLF 104 (123)
T ss_pred EEEEEEeeCCC---CceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc-----------CCCCcEEEEEEE
Confidence 46666643222 468999999999999999999998765443 79999999885 357999999999
Q ss_pred eccccccccceeEEEecc
Q 010107 79 TLSQIVTRKNRSLTLDLV 96 (518)
Q Consensus 79 ~L~~l~~~~~~~~~~~L~ 96 (518)
+|+++........|++|+
T Consensus 105 ~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 105 PLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred eccceecCCCceEEEeCC
Confidence 999999988889999985
No 137
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.12 E-value=3e-10 Score=102.74 Aligned_cols=84 Identities=15% Similarity=0.227 Sum_probs=68.4
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEE-EecCCcccccccccCccCcceeEEEEEe
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIY-DVDTQFHNVDVKTLKLVEQQFLGEATCT 79 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~Vy-D~D~~~~~~~~~~~~l~~~d~iG~~~~~ 79 (518)
||.||+.. +++-....||+++++++||+|+|+|.|... .....|.|.|| |.+. +++++|||++.++
T Consensus 54 YVKv~Llp-~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~~-----------~~~~~~iG~~~i~ 120 (146)
T cd04028 54 YVKVYLLE-GKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYGR-----------MDKKVFMGVAQIL 120 (146)
T ss_pred eEEEEEEC-CCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCCC-----------CCCCceEEEEEEE
Confidence 57778765 222245779999999999999999999987 56679999999 5663 4689999999999
Q ss_pred ccccccccceeEEEeccC
Q 010107 80 LSQIVTRKNRSLTLDLVR 97 (518)
Q Consensus 80 L~~l~~~~~~~~~~~L~~ 97 (518)
|+++........|++|.+
T Consensus 121 L~~l~~~~~~~~Wy~L~~ 138 (146)
T cd04028 121 LDDLDLSNLVIGWYKLFP 138 (146)
T ss_pred cccccCCCCceeEEecCC
Confidence 999976666788999976
No 138
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.12 E-value=1.4e-10 Score=100.18 Aligned_cols=78 Identities=17% Similarity=0.315 Sum_probs=62.4
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeC---ceeEEEEEEEEecCCcccccccccCccCcceeEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE---VVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEAT 77 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe---~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~ 77 (518)
||+|+.... + ..+.||+++++|+||+|++.|.+.+..+ ..+.|.|+|||.|. ++++++||++.
T Consensus 26 yv~v~~~~~-~--~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~-----------~~~dd~lG~~~ 91 (111)
T cd04041 26 YVTASFAKF-G--KPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR-----------FTADDRLGRVE 91 (111)
T ss_pred cEEEEEccC-C--CccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC-----------CCCCCcceEEE
Confidence 577877542 2 2578999999999999999999887654 34689999999995 46799999999
Q ss_pred EeccccccccceeEEEec
Q 010107 78 CTLSQIVTRKNRSLTLDL 95 (518)
Q Consensus 78 ~~L~~l~~~~~~~~~~~L 95 (518)
++|++|...+ -|.++
T Consensus 92 i~l~~l~~~~---~~~~~ 106 (111)
T cd04041 92 IDLKELIEDR---NWMGR 106 (111)
T ss_pred EEHHHHhcCC---CCCcc
Confidence 9999998543 35555
No 139
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.11 E-value=3.6e-10 Score=103.05 Aligned_cols=74 Identities=19% Similarity=0.312 Sum_probs=62.0
Q ss_pred EEEEeeeeeeCCCCCceeeEEEEEEEeCc--------eeEEEEEEEEecCCcccccccccCccCcceeEEEEEecccccc
Q 010107 14 VEVGRTEVVLNSLNPTWITKHIITYQFEV--------VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVT 85 (518)
Q Consensus 14 ~ev~rTevi~~~lNP~f~~~f~~~~~fe~--------~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~ 85 (518)
.+.+||.|+++|+||+|||+|.|.+.... .+.|.|+|||.+.. +++|++||+++++|+.+..
T Consensus 40 ~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f----------~~~D~~iG~~~i~L~~l~~ 109 (155)
T cd08690 40 PQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGF----------LRSDKLLGTAQVKLEPLET 109 (155)
T ss_pred CceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCc----------ccCCCeeEEEEEEcccccc
Confidence 46899999999999999999999875332 35799999999952 3579999999999999987
Q ss_pred ccceeEEEeccC
Q 010107 86 RKNRSLTLDLVR 97 (518)
Q Consensus 86 ~~~~~~~~~L~~ 97 (518)
......|++|..
T Consensus 110 ~~~~~~~~~L~~ 121 (155)
T cd08690 110 KCEIHESVDLMD 121 (155)
T ss_pred cCcceEEEEhhh
Confidence 766677888854
No 140
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.11 E-value=1.8e-10 Score=101.29 Aligned_cols=82 Identities=23% Similarity=0.334 Sum_probs=66.9
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCc--eeEEEEEEEEecCCcccccccccCccCcceeEEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATC 78 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~--~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~ 78 (518)
||.|++....+ ...||+++++++||+|+++|.|.+..+. ...|+|+|||.|. ++++++||++.+
T Consensus 40 yv~v~l~~~~~---~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~-----------~~~~~~lG~~~i 105 (124)
T cd08385 40 YVKVYLLPDKK---KKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR-----------FSKHDLIGEVRV 105 (124)
T ss_pred EEEEEEEcCCC---CceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC-----------CCCCceeEEEEE
Confidence 46777754222 4789999999999999999999876443 3489999999994 467999999999
Q ss_pred eccccccccceeEEEecc
Q 010107 79 TLSQIVTRKNRSLTLDLV 96 (518)
Q Consensus 79 ~L~~l~~~~~~~~~~~L~ 96 (518)
+|+++........|++|.
T Consensus 106 ~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 106 PLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred ecCcccCCCCcceEEEcc
Confidence 999998777788898874
No 141
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.11 E-value=7e-10 Score=96.32 Aligned_cols=111 Identities=19% Similarity=0.211 Sum_probs=74.6
Q ss_pred EEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCCC
Q 010107 135 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNG 213 (518)
Q Consensus 135 i~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~~ 213 (518)
.+.+++|++|+.+ +.+|||++++..+ ...++|.++++ +||.|++ |.+.+..-......|.|.+||.+..+
T Consensus 3 ~v~vi~a~~l~~~---~~~dpyv~v~~~~-----~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~ 73 (117)
T cd08383 3 RLRILEAKNLPSK---GTRDPYCTVSLDQ-----VEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD 73 (117)
T ss_pred EEEEEEecCCCcC---CCCCceEEEEECC-----EEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC
Confidence 4557899999986 7899999999842 24689999999 9999999 55544321112457888888887666
Q ss_pred CCcceEEEEEechhhhhccCCCceEEeecccccCCCCCccccceEEEE
Q 010107 214 KHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 261 (518)
Q Consensus 214 ~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~~~~k~~~k~~~G~i~l~ 261 (518)
++.++|.+.++.... ......+++|.....++ +. .|+|.+.
T Consensus 74 ~~~~~g~v~l~~~~~--~~~~~~w~~L~~~~~~~----~~-~G~l~l~ 114 (117)
T cd08383 74 RDIVIGKVALSKLDL--GQGKDEWFPLTPVDPDS----EV-QGSVRLR 114 (117)
T ss_pred CeeEEEEEEecCcCC--CCcceeEEECccCCCCC----Cc-CceEEEE
Confidence 667777766655443 33334566664332211 22 8999874
No 142
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.11 E-value=4.7e-10 Score=99.90 Aligned_cols=89 Identities=17% Similarity=0.313 Sum_probs=72.1
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||+|++.+ .+++||+++++++||.|+|.|.+.+. ....|.|.|||.+. ++++++||++.++|
T Consensus 38 yv~v~~~~-----~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~~v~d~~~-----------~~~~~~iG~~~i~l 99 (132)
T cd04014 38 YVSIDVDD-----THIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLELTVFHDAA-----------IGPDDFVANCTISF 99 (132)
T ss_pred EEEEEECC-----EEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEEEEEeCCC-----------CCCCceEEEEEEEh
Confidence 46666632 25789999999999999999999886 34689999999884 45789999999999
Q ss_pred ccccc--ccceeEEEeccCCcccccccccCCCCCCCCcccceeeeecee
Q 010107 81 SQIVT--RKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEE 127 (518)
Q Consensus 81 ~~l~~--~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~ 127 (518)
+++.. ......|++|.. .|+|++.+.+
T Consensus 100 ~~l~~~~~~~~~~w~~L~~--------------------~G~l~l~~~~ 128 (132)
T cd04014 100 EDLIQRGSGSFDLWVDLEP--------------------QGKLHVKIEL 128 (132)
T ss_pred HHhcccCCCcccEEEEccC--------------------CcEEEEEEEE
Confidence 99987 456789999854 5888887655
No 143
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.10 E-value=5e-10 Score=97.62 Aligned_cols=93 Identities=19% Similarity=0.328 Sum_probs=71.3
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||+|++.. ..+||+++++++||.|+++|.+... +..+.|.|+|||.+. .+++++||++.++|
T Consensus 25 yv~v~~~~------~~~~T~~~~~t~nP~W~e~f~~~~~-~~~~~l~~~v~d~~~-----------~~~~~~iG~~~~~l 86 (119)
T cd08377 25 FCVLELVN------ARLQTHTIYKTLNPEWNKIFTFPIK-DIHDVLEVTVYDEDK-----------DKKPEFLGKVAIPL 86 (119)
T ss_pred EEEEEECC------EeeecceecCCcCCccCcEEEEEec-CcCCEEEEEEEECCC-----------CCCCceeeEEEEEH
Confidence 46666643 3579999999999999999998864 335789999999984 35799999999999
Q ss_pred cccccccceeEEEeccCCcccccccccCCCCCCCCcccceeeeece
Q 010107 81 SQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAE 126 (518)
Q Consensus 81 ~~l~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e 126 (518)
.++... ...|++|..+ .. +.+.+|+|.++++
T Consensus 87 ~~~~~~--~~~~~~l~~~-----------~~--~~~~~G~i~l~~~ 117 (119)
T cd08377 87 LSIKNG--ERKWYALKDK-----------KL--RTRAKGSILLEMD 117 (119)
T ss_pred HHCCCC--CceEEECccc-----------CC--CCceeeEEEEEEE
Confidence 998754 4568888652 11 2246899988764
No 144
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.10 E-value=2.4e-10 Score=98.33 Aligned_cols=70 Identities=13% Similarity=0.246 Sum_probs=57.2
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCc-eeEEEEEEEEecCCcccccccccCccCcceeEEEEEe
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV-VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCT 79 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~-~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~ 79 (518)
||+|+... ...||+++++++||+|++.|.+...... .+.|.|+|||+|. .+++++||++.++
T Consensus 29 Yv~v~~~~------~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~-----------~~~dd~IG~~~l~ 91 (108)
T cd04039 29 FVIISFGR------RVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK-----------FSFNDYVATGSLS 91 (108)
T ss_pred eEEEEECC------EeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC-----------CCCCcceEEEEEE
Confidence 46666521 4679999999999999999999875433 3489999999995 4689999999999
Q ss_pred cccccccc
Q 010107 80 LSQIVTRK 87 (518)
Q Consensus 80 L~~l~~~~ 87 (518)
|++|....
T Consensus 92 L~~l~~~~ 99 (108)
T cd04039 92 VQELLNAA 99 (108)
T ss_pred HHHHHhhC
Confidence 99998764
No 145
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.09 E-value=2e-10 Score=101.06 Aligned_cols=83 Identities=27% Similarity=0.329 Sum_probs=64.7
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEe-C--ceeEEEEEEEEecCCcccccccccCccCcceeEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQF-E--VVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEAT 77 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~f-e--~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~ 77 (518)
||.|++.. .+...+..||+++++++||+|+++|.+.... + ....|+|+|||.|. .+++++||++.
T Consensus 40 yv~v~l~~-~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~-----------~~~~~~iG~~~ 107 (125)
T cd04031 40 YVKVYLLP-DRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDR-----------DGENDFLGEVV 107 (125)
T ss_pred EEEEEEcc-CCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCC-----------CCCCcEeeEEE
Confidence 46777754 3334578899999999999999999988543 2 34689999999995 36799999999
Q ss_pred EeccccccccceeEEEecc
Q 010107 78 CTLSQIVTRKNRSLTLDLV 96 (518)
Q Consensus 78 ~~L~~l~~~~~~~~~~~L~ 96 (518)
++|++. ...+...|++|+
T Consensus 108 i~l~~~-~~~~~~~W~~L~ 125 (125)
T cd04031 108 IDLADA-LLDDEPHWYPLQ 125 (125)
T ss_pred Eecccc-cccCCcceEECc
Confidence 999994 334567898873
No 146
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.09 E-value=5.4e-10 Score=98.66 Aligned_cols=79 Identities=30% Similarity=0.441 Sum_probs=62.9
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||.|++.+ + ..+||+++++++||+|++.|.+.+. ..+.|.|+|||.+. .+++++||++.++|
T Consensus 25 yv~v~~~~---~--~~~kT~v~~~t~~P~Wne~f~~~~~--~~~~l~~~V~d~~~-----------~~~~~~iG~~~i~l 86 (125)
T cd04021 25 YVEVTVDG---Q--PPKKTEVSKKTSNPKWNEHFTVLVT--PQSTLEFKVWSHHT-----------LKADVLLGEASLDL 86 (125)
T ss_pred EEEEEECC---c--ccEEeeeeCCCCCCccccEEEEEeC--CCCEEEEEEEeCCC-----------CCCCcEEEEEEEEH
Confidence 46676642 2 5799999999999999999998864 56799999999995 36799999999999
Q ss_pred cccccccc-----eeEEEeccC
Q 010107 81 SQIVTRKN-----RSLTLDLVR 97 (518)
Q Consensus 81 ~~l~~~~~-----~~~~~~L~~ 97 (518)
++++...+ ...|++|..
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~ 108 (125)
T cd04021 87 SDILKNHNGKLENVKLTLNLSS 108 (125)
T ss_pred HHhHhhcCCCccceEEEEEEEc
Confidence 99986544 234677754
No 147
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.08 E-value=2e-10 Score=100.99 Aligned_cols=83 Identities=22% Similarity=0.290 Sum_probs=65.2
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEE-EeC--ceeEEEEEEEEecCCcccccccccCccCcceeEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITY-QFE--VVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEAT 77 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~-~fe--~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~ 77 (518)
||.|++..... -....||+++++++||+|+|+|.|.. ..+ ....|+|+|||.|. ++++++||++.
T Consensus 36 yVkv~l~~~~~-~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~-----------~~~~~~lG~~~ 103 (122)
T cd08381 36 YVKTYLLPDPQ-KTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDS-----------LVENEFLGGVC 103 (122)
T ss_pred EEEEEEeeCCc-cCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCC-----------CcCCcEEEEEE
Confidence 46777754221 12468999999999999999999886 222 23489999999995 46899999999
Q ss_pred EeccccccccceeEEEec
Q 010107 78 CTLSQIVTRKNRSLTLDL 95 (518)
Q Consensus 78 ~~L~~l~~~~~~~~~~~L 95 (518)
++|+++........|++|
T Consensus 104 i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 104 IPLKKLDLSQETEKWYPL 121 (122)
T ss_pred EeccccccCCCccceEEC
Confidence 999999877767888887
No 148
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.07 E-value=9.1e-10 Score=89.07 Aligned_cols=83 Identities=29% Similarity=0.432 Sum_probs=68.3
Q ss_pred EEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCCC
Q 010107 135 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNG 213 (518)
Q Consensus 135 i~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~~ 213 (518)
.+.+++|++|+..+..+.+|||++++...... ..++|++++++.+|.|++ |.+.+... ....|.|+|||++..+
T Consensus 2 ~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~---~~~~T~~~~~~~~P~w~e~~~~~~~~~--~~~~l~~~V~~~~~~~ 76 (85)
T PF00168_consen 2 TVTIHSARNLPSKDSNGKPDPYVRVSVNGSES---TKYKTKVKKNTSNPVWNEEFEFPLDDP--DLDSLSFEVWDKDSFG 76 (85)
T ss_dssp EEEEEEEESSSSSSTTSSBEEEEEEEEETTTC---EEEEECCBSSBSSEEEEEEEEEEESHG--CGTEEEEEEEEETSSS
T ss_pred EEEEEEEECCCCcccCCcccccceeecceeee---eeeeeeeeeccccceeeeeeeeeeecc--cccceEEEEEECCCCC
Confidence 45678999999999889999999999975322 679999999999999999 66554332 2344999999999999
Q ss_pred CCcceEEEE
Q 010107 214 KHDLIGKVQ 222 (518)
Q Consensus 214 ~~d~IG~~~ 222 (518)
++++||++.
T Consensus 77 ~~~~iG~~~ 85 (85)
T PF00168_consen 77 KDELIGEVK 85 (85)
T ss_dssp SEEEEEEEE
T ss_pred CCCEEEEEC
Confidence 999999973
No 149
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.07 E-value=3.4e-10 Score=97.60 Aligned_cols=80 Identities=23% Similarity=0.283 Sum_probs=64.6
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCce-eeEEEEEEEeCc--eeEEEEEEEEecCCcccccccccCccCcceeEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTW-ITKHIITYQFEV--VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEAT 77 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f-~~~f~~~~~fe~--~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~ 77 (518)
||+|+... +.+||+++++++||+| +|.|.+.+..+. .+.|+|+|||.|. ++++++||++.
T Consensus 24 yv~v~~~~------~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~-----------~~~~~~iG~~~ 86 (110)
T cd08688 24 FVEVKFGS------TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT-----------YSANDAIGKVY 86 (110)
T ss_pred eEEEEECC------eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC-----------CCCCCceEEEE
Confidence 56676632 6899999999999999 999999887553 3589999999994 46899999999
Q ss_pred Eeccccccc---cceeEEEeccC
Q 010107 78 CTLSQIVTR---KNRSLTLDLVR 97 (518)
Q Consensus 78 ~~L~~l~~~---~~~~~~~~L~~ 97 (518)
++|.++... ....-|++|.+
T Consensus 87 ~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 87 IDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred EeHHHhcccCCccccCCeEEccc
Confidence 999999873 23556888743
No 150
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.06 E-value=2.6e-09 Score=96.45 Aligned_cols=116 Identities=11% Similarity=0.127 Sum_probs=84.5
Q ss_pred CceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeec
Q 010107 132 KTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFN 210 (518)
Q Consensus 132 ~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d 210 (518)
+.+.+.+++|++|+.++ +|||.+.+.+ ..+.||.++.++.||.|+| |.|. .+ .....|.|.||+.+
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~-----~~vaRT~v~~~~~nP~W~E~F~f~--~~-~~~~~l~v~v~k~~ 77 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDK-----TLYARTTSKLKTDTLFWGEHFEFS--NL-PPVSVITVNLYRES 77 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECC-----EEEEEEEEEcCCCCCcceeeEEec--CC-CcccEEEEEEEEcc
Confidence 34667789999999865 7999999852 4678999999999999999 5553 22 12467999998755
Q ss_pred CCC----CCcceEEEEEechhhhhccCCCceEEeecccccCC----CCCccccceEEEE
Q 010107 211 SNG----KHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGN----NNHKILNSQLFVD 261 (518)
Q Consensus 211 ~~~----~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~~~~k----~~~k~~~G~i~l~ 261 (518)
... ++++||.+.+++.++........+|+++..+.+.+ ...+. .+.|+|.
T Consensus 78 ~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~-~~~lrik 135 (146)
T cd04013 78 DKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGE-SPSIRIK 135 (146)
T ss_pred CccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCC-CCEEEEE
Confidence 322 57899999999999986555567899988664321 01122 6777773
No 151
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.06 E-value=5.5e-10 Score=99.07 Aligned_cols=82 Identities=13% Similarity=0.248 Sum_probs=62.0
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEE-EEeCce--eEEEEEEEEecCCcccccccccCccCcceeEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIIT-YQFEVV--QTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEAT 77 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~-~~fe~~--q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~ 77 (518)
||.|++-...+ +..||+++++++||+|+|+|.|. +..+.. ..|+|.|||.|. ++++++||++.
T Consensus 41 yV~v~l~~~~~---~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~-----------~~~d~~lG~~~ 106 (128)
T cd08388 41 YVKLQLLPEKE---HKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR-----------YSRDDVIGEVV 106 (128)
T ss_pred EEEEEEeCCcC---ceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCC-----------CCCCceeEEEE
Confidence 46666643222 47899999999999999999983 332222 379999999984 46899999999
Q ss_pred Eeccccccc--cceeEEEecc
Q 010107 78 CTLSQIVTR--KNRSLTLDLV 96 (518)
Q Consensus 78 ~~L~~l~~~--~~~~~~~~L~ 96 (518)
++|+++... ..-.+|++|+
T Consensus 107 i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 107 CPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EeccccCCCCCceEEEEEecc
Confidence 999999655 3456788874
No 152
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.06 E-value=1.1e-09 Score=99.90 Aligned_cols=104 Identities=18% Similarity=0.193 Sum_probs=74.6
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeC-CCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEe
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLN-SLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCT 79 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~-~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~ 79 (518)
||+|++.. +..||+++.+ ++||+|+|.|.|.......+.|.|+|||.+. ++++++||++.++
T Consensus 24 YV~v~l~~------~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~-----------~~~dd~lG~v~i~ 86 (150)
T cd04019 24 FVKAQLGN------QVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVG-----------PNKDEPLGRAVIP 86 (150)
T ss_pred EEEEEECC------EEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecC-----------CCCCCeEEEEEEE
Confidence 46676642 5779999977 6999999999998764445689999999985 3578999999999
Q ss_pred ccccccc----cceeEEEeccCCcccccccccCCCCCCCCcccceeeeeceee
Q 010107 80 LSQIVTR----KNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEEC 128 (518)
Q Consensus 80 L~~l~~~----~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~~ 128 (518)
|.++... .....|++|.+..+.- + +.+ ..+.+|+|++.+...
T Consensus 87 L~~l~~~~~~~~~~~~W~~L~~~~~~~----~-~~k--~~k~~g~l~l~i~~~ 132 (150)
T cd04019 87 LNDIERRVDDRPVPSRWFSLERPGGAM----E-QKK--KRKFASRIHLRLCLD 132 (150)
T ss_pred HHHCcccCCCCccCCceEECcCCCCcc----c-ccc--cCcccccEEEEEEec
Confidence 9998643 2357899997621000 0 000 125579999887654
No 153
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.06 E-value=5.3e-10 Score=98.42 Aligned_cols=82 Identities=18% Similarity=0.292 Sum_probs=65.2
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeC---ceeEEEEEEEEecCCcccccccccCccCcceeEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE---VVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEAT 77 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe---~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~ 77 (518)
||.|++...++ ...||+++++++||+|+++|.+..... ....|+|+|||.|. ++++++||++.
T Consensus 40 yv~v~~~~~~~---~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~-----------~~~~~~iG~~~ 105 (125)
T cd08386 40 FVKIYLLPDKK---HKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR-----------FSRNDPIGEVS 105 (125)
T ss_pred eEEEEECCCCC---cceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC-----------CcCCcEeeEEE
Confidence 46676643222 368999999999999999998874322 23579999999994 46799999999
Q ss_pred EeccccccccceeEEEecc
Q 010107 78 CTLSQIVTRKNRSLTLDLV 96 (518)
Q Consensus 78 ~~L~~l~~~~~~~~~~~L~ 96 (518)
++|+++........|.+|.
T Consensus 106 i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 106 LPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred EecccccCCCCcceEEecC
Confidence 9999998777788999884
No 154
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.03 E-value=4.1e-10 Score=101.79 Aligned_cols=69 Identities=29% Similarity=0.497 Sum_probs=59.6
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||||-+.. +-.||.++++|+||+|||.|.|... +....|++.|||.|. ++.|||||+++++|
T Consensus 30 yVVl~lg~------q~lkT~~v~~n~NPeWNe~ltf~v~-d~~~~lkv~VyD~D~-----------fs~dD~mG~A~I~l 91 (168)
T KOG1030|consen 30 YVVLELGN------QKLKTRVVYKNLNPEWNEELTFTVK-DPNTPLKVTVYDKDT-----------FSSDDFMGEATIPL 91 (168)
T ss_pred eEEEEECC------eeeeeeeecCCCCCcccceEEEEec-CCCceEEEEEEeCCC-----------CCcccccceeeecc
Confidence 56666643 5679999999999999999999988 677899999999996 46899999999999
Q ss_pred ccccccc
Q 010107 81 SQIVTRK 87 (518)
Q Consensus 81 ~~l~~~~ 87 (518)
..+....
T Consensus 92 ~p~~~~~ 98 (168)
T KOG1030|consen 92 KPLLEAQ 98 (168)
T ss_pred HHHHHHh
Confidence 9998654
No 155
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.03 E-value=4.7e-10 Score=99.15 Aligned_cols=60 Identities=25% Similarity=0.360 Sum_probs=52.5
Q ss_pred EEeeeeeeCCCCCceeeEEEEE-EEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEeccccccc
Q 010107 16 VGRTEVVLNSLNPTWITKHIIT-YQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTR 86 (518)
Q Consensus 16 v~rTevi~~~lNP~f~~~f~~~-~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~~ 86 (518)
+.||+++++++||+|+|+|.|. +.++..+.|+|+|||.|. ++++++||++.++|...+..
T Consensus 60 ~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~-----------~s~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 60 EKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN-----------GWDDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred cccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC-----------CCCCCeeEEEEEEecCCcee
Confidence 7899999999999999999997 355667899999999995 36899999999999987743
No 156
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.02 E-value=4.2e-10 Score=99.16 Aligned_cols=83 Identities=14% Similarity=0.132 Sum_probs=64.2
Q ss_pred EEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCcee--EEEEEEEEecCCcccccccccCccCcceeEEEEEe
Q 010107 2 LVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQ--TLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCT 79 (518)
Q Consensus 2 ~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q--~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~ 79 (518)
|-||+-...+++....||+++++++||+|+|+|.|++..++.+ .|.|.|||.|. ++++++||++.++
T Consensus 39 VKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~-----------~~~~~~lG~~~i~ 107 (124)
T cd08680 39 VRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGP-----------DQQEECLGGAQIS 107 (124)
T ss_pred EEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCC-----------CCceeEEEEEEEE
Confidence 3445544444444578999999999999999999997655444 89999999984 4689999999999
Q ss_pred ccccccc-cceeEEEec
Q 010107 80 LSQIVTR-KNRSLTLDL 95 (518)
Q Consensus 80 L~~l~~~-~~~~~~~~L 95 (518)
|+++... .+...|++|
T Consensus 108 L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 108 LADFESSEEMSTKWYNL 124 (124)
T ss_pred hhhccCCCccccccccC
Confidence 9999544 456667654
No 157
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.01 E-value=2e-09 Score=95.30 Aligned_cols=102 Identities=18% Similarity=0.346 Sum_probs=70.4
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||+|++.. ..+||+++++|+||.|++.|.+... +....|.|+|||.|.............+++++||++.++|
T Consensus 25 yv~v~~~~------~~~kT~~v~~t~~P~Wne~f~f~~~-~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l 97 (127)
T cd04027 25 YVTVQVGK------TKKRTKTIPQNLNPVWNEKFHFECH-NSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEV 97 (127)
T ss_pred EEEEEECC------EeeecceecCCCCCccceEEEEEec-CCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEh
Confidence 46677632 4689999999999999999988764 3346899999999852100000000124699999999999
Q ss_pred cccccccceeEEEeccCCcccccccccCCCCCCCCcccceeeee
Q 010107 81 SQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVH 124 (518)
Q Consensus 81 ~~l~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~ 124 (518)
.++.. ....|++|..+ .+ +...+|+|.++
T Consensus 98 ~~~~~--~~~~w~~L~~~-----------~~--~~~~~G~i~~~ 126 (127)
T cd04027 98 RTLSG--EMDVWYNLEKR-----------TD--KSAVSGAIRLH 126 (127)
T ss_pred HHccC--CCCeEEECccC-----------CC--CCcEeEEEEEE
Confidence 99853 45689999652 11 23568888775
No 158
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.01 E-value=1.1e-09 Score=131.40 Aligned_cols=102 Identities=22% Similarity=0.276 Sum_probs=81.2
Q ss_pred CceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeec
Q 010107 132 KTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFN 210 (518)
Q Consensus 132 ~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d 210 (518)
+.+.+.+++|+||. +.+|.+||||++...+. ...||++++++.||.||+ |.+.++.. +.+.+|.|+|||+|
T Consensus 1980 G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~-----~~~kTkvvk~~~nP~Wne~f~~~~~~p-~~~~~l~iev~d~d 2051 (2102)
T PLN03200 1980 GSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNG-----PPRQTKVVSHSSSPEWKEGFTWAFDSP-PKGQKLHISCKSKN 2051 (2102)
T ss_pred cceEEEEeeccccc--cccCCCCCeEEEEECCC-----CcccccccCCCCCCCcccceeeeecCC-CCCCceEEEEEecC
Confidence 44666779999998 56899999999998632 357999999999999999 77666653 23578999999999
Q ss_pred CCCCCcceEEEEEechhhhhccCCCceEEeec
Q 010107 211 SNGKHDLIGKVQKSLADLEKLHSSGQGQNLFL 242 (518)
Q Consensus 211 ~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n 242 (518)
..+++ .||.+++++.++........+|+|.+
T Consensus 2052 ~f~kd-~~G~~~i~l~~vv~~~~~~~~~~L~~ 2082 (2102)
T PLN03200 2052 TFGKS-SLGKVTIQIDRVVMEGTYSGEYSLNP 2082 (2102)
T ss_pred ccCCC-CCceEEEEHHHHhcCceeeeeeecCc
Confidence 98654 89999999999986444445677764
No 159
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.01 E-value=1.8e-09 Score=95.87 Aligned_cols=94 Identities=11% Similarity=0.114 Sum_probs=74.4
Q ss_pred eEEEEEeecCCCcC--CCCCC--CCcEEEEEEEecCCceeeEeeeccccCCCC--Cceee-eEEeeecc-C---------
Q 010107 134 TTELILRCSDLDCK--DLFSR--NDPFLVISKIVESGTHIPVCKTEVLKNETK--PTWKS-VFLNIQQV-G--------- 196 (518)
Q Consensus 134 li~~~i~a~~L~~~--d~~g~--sDPyv~i~~~~~~~~~~~~~kTevik~tln--P~W~e-f~~~~~~l-~--------- 196 (518)
+.+.++.|++++.. +..|. |||||++++.+. ....++|.++++++| |.||+ |.+++... .
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~---~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~ 78 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGL---EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKK 78 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccC---cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEee
Confidence 44667899996544 44674 999999999753 356899999999999 99998 66555542 0
Q ss_pred -----------CCCccEEEEEEeecCCCCCcceEEEEEechhhhh
Q 010107 197 -----------SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEK 230 (518)
Q Consensus 197 -----------~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~ 230 (518)
-....|.++|||.|..+++++||+++++|..+.+
T Consensus 79 ~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~ 123 (133)
T cd08374 79 EHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPR 123 (133)
T ss_pred ccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccc
Confidence 0246799999999999999999999999999854
No 160
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.00 E-value=1.3e-08 Score=114.43 Aligned_cols=226 Identities=15% Similarity=0.238 Sum_probs=151.7
Q ss_pred EEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEecc
Q 010107 2 LVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLS 81 (518)
Q Consensus 2 ~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~ 81 (518)
+.||... .+|..|..++.+-+|.|+..+......-..-.+++.++|... .+.||+...+|-
T Consensus 603 a~l~~~~-----keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~~--------------g~~i~~~~~~l~ 663 (1227)
T COG5038 603 AELYTNA-----KEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQS--------------GKVIATEGSTLP 663 (1227)
T ss_pred EEEEecc-----eEEeccceeeeccCCceeeecceEeccCcceeEEEEeccccc--------------Cceeccccccch
Confidence 4566654 489999999999999999999888776666789999998752 567888888888
Q ss_pred ccccc-cceeEEEeccCCcccc--cccccCCCCCCCCcccceeeeeceeeecCCceEEE-EEeecCCCcCCCCCCCCcEE
Q 010107 82 QIVTR-KNRSLTLDLVRREETI--TPITEESNPSNRPKHCGKLTVHAEECINSKTTTEL-ILRCSDLDCKDLFSRNDPFL 157 (518)
Q Consensus 82 ~l~~~-~~~~~~~~L~~~~~~i--~~~~~~~~~~~~~~~~G~I~i~~e~~~~~~~li~~-~i~a~~L~~~d~~g~sDPyv 157 (518)
+++.. .....|+++++.+|.| +--|.|-.. ..|.. +........+.+++ +..|.+|.+....+++|||+
T Consensus 664 ~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~-----~~~~~--s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPya 736 (1227)
T COG5038 664 DLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYN-----AGGSS--SKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYA 736 (1227)
T ss_pred HhhhccccceEEEEcCCCcceEEEEeccceeec-----ccccc--ceeeecCccceEEEEeehhhcccccccCcccccce
Confidence 88744 4677899987643333 111111000 00000 00011122334444 46788888888899999999
Q ss_pred EEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCCCCCcceEEEEEechhhhhccCCCc
Q 010107 158 VISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQ 236 (518)
Q Consensus 158 ~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~~~~~~ 236 (518)
++...+ ..++||-....++||.|++ ..+++. .....+.++++|++..+++.++|++.++++++........
T Consensus 737 ~v~~n~-----~~k~rti~~~~~~npiw~~i~Yv~v~---sk~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~ 808 (1227)
T COG5038 737 TVLVNN-----LVKYRTIYGSSTLNPIWNEILYVPVT---SKNQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSA 808 (1227)
T ss_pred EEEecc-----eeEEEEecccCccccceeeeEEEEec---CCccEEeeeeecchhccccceeceeeeeeeeeeecCCCcc
Confidence 998753 5789999999999999999 334443 2345599999999999999999999999999964222222
Q ss_pred eEEeeccccc-CCCCC--ccccceEEEE
Q 010107 237 GQNLFLSTAA-GNNNH--KILNSQLFVD 261 (518)
Q Consensus 237 ~~~l~n~~~~-~k~~~--k~~~G~i~l~ 261 (518)
...-++.... +|-.. ++..|++.+.
T Consensus 809 ~~~~i~g~~~t~~l~~~~~~~~~tit~~ 836 (1227)
T COG5038 809 LMETIDGAEETGKLSLTGKKVKGTITYK 836 (1227)
T ss_pred eEEeecCcccccccccccCCcceeEEEE
Confidence 2233333222 11111 3348888874
No 161
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=98.99 E-value=8.1e-10 Score=96.86 Aligned_cols=83 Identities=22% Similarity=0.243 Sum_probs=65.5
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCc--eeEEEEEEEEecCCcccccccccCccCcceeEEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATC 78 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~--~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~ 78 (518)
||.|++.. ++.....+||+++++++||+|+++|.+.+..+. ...|.|+|||.|. ++++++||++.+
T Consensus 39 yv~v~l~~-~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~-----------~~~~~~iG~~~i 106 (123)
T cd08521 39 YVKVYLLP-DKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDR-----------FGRNTFLGEVEI 106 (123)
T ss_pred EEEEEEec-CCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCC-----------CcCCceeeEEEE
Confidence 46777654 233345789999999999999999998765332 3489999999984 467899999999
Q ss_pred eccccccccceeEEEec
Q 010107 79 TLSQIVTRKNRSLTLDL 95 (518)
Q Consensus 79 ~L~~l~~~~~~~~~~~L 95 (518)
+|+++........|++|
T Consensus 107 ~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 107 PLDSWDLDSQQSEWYPL 123 (123)
T ss_pred ecccccccCCCccEEEC
Confidence 99999766667788876
No 162
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=98.99 E-value=1.3e-09 Score=97.85 Aligned_cols=84 Identities=15% Similarity=0.180 Sum_probs=69.8
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeC---------------ceeEEEEEEEEecCCccccccccc
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE---------------VVQTLVFRIYDVDTQFHNVDVKTL 65 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe---------------~~q~L~~~VyD~D~~~~~~~~~~~ 65 (518)
||.|++... .+....||+++++++||.|++.|.+..... ..+.|.|+|||.+.
T Consensus 22 yv~v~~~~~--~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~---------- 89 (137)
T cd08675 22 FARVTLNYS--SKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASM---------- 89 (137)
T ss_pred EEEEEEecC--CcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCc----------
Confidence 466776542 445789999999999999999999987643 45689999999995
Q ss_pred CccCcceeEEEEEeccccccccceeEEEeccC
Q 010107 66 KLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 97 (518)
Q Consensus 66 ~l~~~d~iG~~~~~L~~l~~~~~~~~~~~L~~ 97 (518)
.++++|||++.++|.++........|++|..
T Consensus 90 -~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~ 120 (137)
T cd08675 90 -VSGDDFLGEVRIPLQGLQQAGSHQAWYFLQP 120 (137)
T ss_pred -CcCCcEEEEEEEehhhccCCCcccceEecCC
Confidence 3579999999999999987767788999976
No 163
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=98.99 E-value=3.4e-09 Score=93.67 Aligned_cols=94 Identities=20% Similarity=0.301 Sum_probs=66.9
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||+|+... +..||+++++++||+|++.|.+... ...+.|+|+|||.+. + ++++||++.+++
T Consensus 27 yv~v~~~~------~~~kT~v~~~t~nP~Wne~f~f~~~-~~~~~l~i~V~d~~~-----------~-~d~~lG~~~~~l 87 (126)
T cd04046 27 YVIIKCEG------ESVRSPVQKDTLSPEFDTQAIFYRK-KPRSPIKIQVWNSNL-----------L-CDEFLGQATLSA 87 (126)
T ss_pred cEEEEECC------EEEEeCccCCCCCCcccceEEEEec-CCCCEEEEEEEECCC-----------C-CCCceEEEEEec
Confidence 46665532 3579999999999999999988765 346789999999884 2 489999999999
Q ss_pred cccccccceeEEEeccCCcccccccccCCCCCCCCcccceeeeece
Q 010107 81 SQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAE 126 (518)
Q Consensus 81 ~~l~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e 126 (518)
.++.. +...+++|... . ... +.+..|+|.++..
T Consensus 88 ~~~~~--~~~~~~~l~~~------~---~~~--~~~~~G~i~~~~~ 120 (126)
T cd04046 88 DPNDS--QTLRTLPLRKR------G---RDA--AGEVPGTISVKVT 120 (126)
T ss_pred ccCCC--cCceEEEcccC------C---CCC--CCCCCCEEEEEEE
Confidence 98643 33455666421 0 001 2366888887653
No 164
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=98.96 E-value=1.7e-09 Score=95.09 Aligned_cols=82 Identities=20% Similarity=0.252 Sum_probs=64.8
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeC---ceeEEEEEEEEecCCcccccccccCccCcceeEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE---VVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEAT 77 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe---~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~ 77 (518)
||.|++.. ...+..+.||+++++++||+|++.|.+..... ..+.|.|+|||.+. . ++++||++.
T Consensus 39 yv~v~~~~-~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~-----------~-~~~~iG~~~ 105 (123)
T cd04035 39 YVKLNLLP-GASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDR-----------F-GNDFLGETR 105 (123)
T ss_pred eEEEEEec-CCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCC-----------c-CCeeEEEEE
Confidence 56777654 23356789999999999999999998864322 23589999999984 3 689999999
Q ss_pred EeccccccccceeEEEec
Q 010107 78 CTLSQIVTRKNRSLTLDL 95 (518)
Q Consensus 78 ~~L~~l~~~~~~~~~~~L 95 (518)
++|++|..+..+.+++.|
T Consensus 106 i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 106 IPLKKLKPNQTKQFNICL 123 (123)
T ss_pred EEcccCCCCcceEeeccC
Confidence 999999988777777654
No 165
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=98.95 E-value=7.1e-09 Score=92.92 Aligned_cols=86 Identities=19% Similarity=0.331 Sum_probs=63.4
Q ss_pred CEEEEEEcCCCcE--------EEEEeeeeeeCCCCCce-eeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcc
Q 010107 1 MLVVYMKARDGAL--------VEVGRTEVVLNSLNPTW-ITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQ 71 (518)
Q Consensus 1 ~~vv~~~~~~~~~--------~ev~rTevi~~~lNP~f-~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d 71 (518)
||.|++.. +++| .+..||+++++++||+| ++.|.+... ..+.|.|+|||.+... ....++
T Consensus 24 yvki~~~~-~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~V~D~~~~~--------~~~~~d 92 (137)
T cd08691 24 YVKISIQP-GKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIEVKDKFAKS--------RPIIRR 92 (137)
T ss_pred eEEEEEEC-CCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEEEEecCCCC--------CccCCc
Confidence 45666653 3444 46899999999999999 999998774 3468999999987431 112379
Q ss_pred eeEEEEEecccccccc-c--eeEEEeccC
Q 010107 72 FLGEATCTLSQIVTRK-N--RSLTLDLVR 97 (518)
Q Consensus 72 ~iG~~~~~L~~l~~~~-~--~~~~~~L~~ 97 (518)
+||++.++|++|.... . ...|++|..
T Consensus 93 ~lG~~~i~l~~l~~~~~~~~~~~~~~l~k 121 (137)
T cd08691 93 FLGKLSIPVQRLLERHAIGDQELSYTLGR 121 (137)
T ss_pred eEEEEEEEHHHhcccccCCceEEEEECCc
Confidence 9999999999997543 2 445677754
No 166
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=98.94 E-value=2e-09 Score=94.85 Aligned_cols=81 Identities=21% Similarity=0.326 Sum_probs=64.0
Q ss_pred CEEEEEEcCCCcEEEEEeeeeee-CCCCCceeeEEEEEEEeCc----eeEEEEEEEEecCCcccccccccCccCcceeEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVL-NSLNPTWITKHIITYQFEV----VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGE 75 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~-~~lNP~f~~~f~~~~~fe~----~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~ 75 (518)
||+|++.. ....+|++++ +++||.|++.|.|.+.... .+.|+|+|||.+. ++++++||+
T Consensus 24 Yv~v~~~~-----~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~-----------~~~~~~lG~ 87 (125)
T cd04051 24 YAVVWIDP-----SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP-----------SLGDKLIGE 87 (125)
T ss_pred EEEEEECC-----CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC-----------CCCCCcEEE
Confidence 46666643 1356999985 5899999999999886553 5799999999984 357999999
Q ss_pred EEEeccccccccc-----eeEEEeccC
Q 010107 76 ATCTLSQIVTRKN-----RSLTLDLVR 97 (518)
Q Consensus 76 ~~~~L~~l~~~~~-----~~~~~~L~~ 97 (518)
+.++|.++..... ...|++|..
T Consensus 88 ~~i~l~~l~~~~~~~~~~~~~~~~l~~ 114 (125)
T cd04051 88 VRVPLKDLLDGASPAGELRFLSYQLRR 114 (125)
T ss_pred EEEEHHHhhcccCCCCcceeEEEEeEC
Confidence 9999999986554 367888865
No 167
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=98.94 E-value=2.6e-09 Score=91.19 Aligned_cols=77 Identities=18% Similarity=0.209 Sum_probs=64.3
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||.|++.+ +..||+++++++||+|++.|.|.......+.|.|+|||.+. +++||++.++|
T Consensus 24 yv~v~~~~------~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--------------~~~iG~~~i~l 83 (105)
T cd04050 24 YVELTVGK------TTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--------------GKSLGSLTLPL 83 (105)
T ss_pred EEEEEECC------EEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--------------CCccEEEEEEH
Confidence 46666642 58899999999999999999999876567899999999882 78999999999
Q ss_pred ccccccc--ceeEEEeccC
Q 010107 81 SQIVTRK--NRSLTLDLVR 97 (518)
Q Consensus 81 ~~l~~~~--~~~~~~~L~~ 97 (518)
+++...+ ....|++|.+
T Consensus 84 ~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 84 SELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred HHhhccccceeeeeEecCC
Confidence 9998664 4567899865
No 168
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=98.93 E-value=2.7e-09 Score=94.79 Aligned_cols=84 Identities=15% Similarity=0.268 Sum_probs=68.1
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeC-ceeEEEEEEEEecCCcccccccccCccCcceeEEEEEe
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE-VVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCT 79 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe-~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~ 79 (518)
||.|++.. .+...+.+||+++++++||.|+++|.+.+... ..+.|+|+|||.+. .+++++||++.++
T Consensus 37 yv~v~~~~-~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~-----------~~~~~~iG~~~~~ 104 (131)
T cd04026 37 YVKLKLIP-DPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR-----------TTRNDFMGSLSFG 104 (131)
T ss_pred cEEEEEEc-CCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC-----------CCCcceeEEEEEe
Confidence 46677754 22235789999999999999999999987643 34689999999884 3579999999999
Q ss_pred ccccccccceeEEEeccC
Q 010107 80 LSQIVTRKNRSLTLDLVR 97 (518)
Q Consensus 80 L~~l~~~~~~~~~~~L~~ 97 (518)
|+++... ....|++|.+
T Consensus 105 l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 105 VSELIKM-PVDGWYKLLN 121 (131)
T ss_pred HHHhCcC-ccCceEECcC
Confidence 9999855 6788999966
No 169
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=98.93 E-value=7e-09 Score=92.80 Aligned_cols=88 Identities=20% Similarity=0.319 Sum_probs=65.2
Q ss_pred EEEeeeeeeCCCCCceeeEEEEEEE-e--------CceeEEEEEEEEecCCcccccccccCccCcceeEEEEE-eccccc
Q 010107 15 EVGRTEVVLNSLNPTWITKHIITYQ-F--------EVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATC-TLSQIV 84 (518)
Q Consensus 15 ev~rTevi~~~lNP~f~~~f~~~~~-f--------e~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~-~L~~l~ 84 (518)
...||+++++|+||+|++.|.+... . +..+.|.|+|||.|. .+++++||++.+ ++..+.
T Consensus 33 ~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~-----------~~~d~~iG~~~i~~~~~~~ 101 (135)
T cd04017 33 QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDS-----------VGKDEFLGRSVAKPLVKLD 101 (135)
T ss_pred eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcC-----------CCCCccceEEEeeeeeecc
Confidence 4789999999999999999988632 1 123579999999995 367999999987 343333
Q ss_pred c---ccceeEEEeccCCcccccccccCCCCCCCCcccceeeeeceeee
Q 010107 85 T---RKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEECI 129 (518)
Q Consensus 85 ~---~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~~~ 129 (518)
. ......|++|..+ ....|+|.++.+.+.
T Consensus 102 ~~~~~~~~~~W~~L~~~----------------~~~~Geil~~~~~~~ 133 (135)
T cd04017 102 LEEDFPPKLQWFPIYKG----------------GQSAGELLAAFELIE 133 (135)
T ss_pred cCCCCCCCceEEEeecC----------------CCchhheeEEeEEEE
Confidence 2 2456689998541 245899999887654
No 170
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=98.93 E-value=1.8e-09 Score=99.79 Aligned_cols=85 Identities=22% Similarity=0.266 Sum_probs=67.1
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEE-eCc--eeEEEEEEEEecCCcccccccccCccCcceeEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQ-FEV--VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEAT 77 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~-fe~--~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~ 77 (518)
||.|++.. ++...+..||+|+++|+||+|+++|.+... .+. ...|.|+|||.|. ++++++||++.
T Consensus 51 YVkv~l~~-~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~-----------~~~d~~lG~v~ 118 (162)
T cd04020 51 FVKCYLLP-DKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDK-----------LSSNDFLGGVR 118 (162)
T ss_pred EEEEEEEc-CCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCC-----------CCCCceEEEEE
Confidence 46666643 223346899999999999999999988742 222 2479999999995 46799999999
Q ss_pred EeccccccccceeEEEeccC
Q 010107 78 CTLSQIVTRKNRSLTLDLVR 97 (518)
Q Consensus 78 ~~L~~l~~~~~~~~~~~L~~ 97 (518)
++++++........|++|.+
T Consensus 119 i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 119 LGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred EeCCccccCCCccccccCCh
Confidence 99999987777888988854
No 171
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=98.92 E-value=2.8e-09 Score=97.23 Aligned_cols=66 Identities=24% Similarity=0.310 Sum_probs=57.2
Q ss_pred EEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEeccccccccceeEEE
Q 010107 14 VEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTL 93 (518)
Q Consensus 14 ~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~~~~~~~~~ 93 (518)
.++.||+++++++||+|+++|.|.+.....+.|.|+|||.| ++|||++.++|+++. +.+...|+
T Consensus 88 ~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d---------------d~~IG~v~i~l~~l~-~~~~d~W~ 151 (153)
T cd08676 88 KSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---------------DDFLGCVNIPLKDLP-SCGLDSWF 151 (153)
T ss_pred cccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC---------------CCeEEEEEEEHHHhC-CCCCCCeE
Confidence 46799999999999999999999986545689999999976 589999999999998 44677787
Q ss_pred ec
Q 010107 94 DL 95 (518)
Q Consensus 94 ~L 95 (518)
+|
T Consensus 152 ~L 153 (153)
T cd08676 152 KL 153 (153)
T ss_pred eC
Confidence 76
No 172
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=98.92 E-value=1.9e-09 Score=96.19 Aligned_cols=75 Identities=25% Similarity=0.222 Sum_probs=60.2
Q ss_pred CEEEEEEcCCC-cEEEEEeeeeeeCCCCCceeeEEEEEEEeCc----eeEEEEEEEEecCCcccccccccCccCcceeEE
Q 010107 1 MLVVYMKARDG-ALVEVGRTEVVLNSLNPTWITKHIITYQFEV----VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGE 75 (518)
Q Consensus 1 ~~vv~~~~~~~-~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~----~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~ 75 (518)
||.|++..... +.....||+++++|+||+|+|+|.+.+..+. ...|.|+|||.|. ++++++||+
T Consensus 40 yv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~-----------~~~d~~iG~ 108 (133)
T cd04009 40 FVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDL-----------LGSNDFEGE 108 (133)
T ss_pred EEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCC-----------CCCCcEeEE
Confidence 57777764221 2457899999999999999999999976432 3489999999995 467999999
Q ss_pred EEEeccccccc
Q 010107 76 ATCTLSQIVTR 86 (518)
Q Consensus 76 ~~~~L~~l~~~ 86 (518)
+.++|++|..-
T Consensus 109 ~~i~l~~l~~~ 119 (133)
T cd04009 109 AFLPLNDIPGV 119 (133)
T ss_pred EEEeHHHCCcc
Confidence 99999999743
No 173
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=98.91 E-value=2.9e-09 Score=94.45 Aligned_cols=83 Identities=19% Similarity=0.233 Sum_probs=63.1
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCc--eeEEEEEEEEecCCcccccccccCccCcceeEEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATC 78 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~--~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~ 78 (518)
||.||+-...++ ....||+++++++||+|||+|.+.+..++ ...|.|.|||.+. ++++++||++.+
T Consensus 40 YVkv~llp~~~~-~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~-----------~~~~~~lG~~~i 107 (128)
T cd08392 40 YVKVCLLPDKSH-NSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRT-----------LKRRVFLGEVLI 107 (128)
T ss_pred EEEEEEEeCCcc-cceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCC-----------CcCcceEEEEEE
Confidence 456666542222 24669999999999999999999875443 2489999999884 468999999999
Q ss_pred ecccccccc---ceeEEEec
Q 010107 79 TLSQIVTRK---NRSLTLDL 95 (518)
Q Consensus 79 ~L~~l~~~~---~~~~~~~L 95 (518)
+|+++.... ....|++|
T Consensus 108 ~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 108 PLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EcCCcccCCCCccccceEEC
Confidence 999996442 45568776
No 174
>PLN03008 Phospholipase D delta
Probab=98.90 E-value=1.3e-08 Score=112.62 Aligned_cols=145 Identities=17% Similarity=0.240 Sum_probs=100.9
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||.|++.+ ..++||+|+++++||+|+|.|.|.... ....|.|.|||.|. ++ +|+||++.++|
T Consensus 80 YV~I~Lg~-----~rv~RTrVi~n~~NPvWNE~F~f~vah-~~s~L~f~VkD~D~-----------~g-aD~IG~a~IPL 141 (868)
T PLN03008 80 YVTVVVPQ-----ATLARTRVLKNSQEPLWDEKFNISIAH-PFAYLEFQVKDDDV-----------FG-AQIIGTAKIPV 141 (868)
T ss_pred eEEEEECC-----cceeeEEeCCCCCCCCcceeEEEEecC-CCceEEEEEEcCCc-----------cC-CceeEEEEEEH
Confidence 56677732 258899999999999999999998763 34589999999885 33 69999999999
Q ss_pred cccccccceeEEEeccCCcccccccccCCCCCCCCcccceeeeeceeeecCCceEEEEEeecCCCcC-CCCCCCCcEEEE
Q 010107 81 SQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEECINSKTTTELILRCSDLDCK-DLFSRNDPFLVI 159 (518)
Q Consensus 81 ~~l~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~~~~~~~li~~~i~a~~L~~~-d~~g~sDPyv~i 159 (518)
.+|........|++|.+. .+ ...+..++|++.+.+.+...... -++.+... +..|-...|+..
T Consensus 142 ~~L~~Ge~vd~Wl~Ll~~-----------~~-kp~k~~~kl~v~lqf~pv~~~~~----~~~gv~~~~~~~gvp~t~Fp~ 205 (868)
T PLN03008 142 RDIASGERISGWFPVLGA-----------SG-KPPKAETAIFIDMKFTPFDQIHS----YRCGIAGDPERRGVRRTYFPV 205 (868)
T ss_pred HHcCCCCceEEEEEcccc-----------CC-CCCCCCcEEEEEEEEEEcccccc----ccccccCCcCCCCCCCccccC
Confidence 999988778899999662 11 02255689999998876433221 22333221 344555556655
Q ss_pred EEEecCCceeeEeeeccccCCCCC
Q 010107 160 SKIVESGTHIPVCKTEVLKNETKP 183 (518)
Q Consensus 160 ~~~~~~~~~~~~~kTevik~tlnP 183 (518)
.+ |.++..|+-.-+..+.-|
T Consensus 206 r~----g~~VtlYqdAhv~d~~~p 225 (868)
T PLN03008 206 RK----GSQVRLYQDAHVMDGTLP 225 (868)
T ss_pred CC----CCEeEEeccCCCCCCCCC
Confidence 33 345667777777666555
No 175
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=98.88 E-value=4.4e-09 Score=95.21 Aligned_cols=69 Identities=23% Similarity=0.442 Sum_probs=58.3
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||+|++.. +..||+++++++||+|+|.|.|... +..+.|.|+|||.|. ++++++||+++++|
T Consensus 25 YV~v~~g~------~~~kT~vvk~t~nP~WnE~f~f~i~-~~~~~l~~~V~D~d~-----------~~~dd~iG~a~i~l 86 (145)
T cd04038 25 YVVLTLGN------QKVKTRVIKKNLNPVWNEELTLSVP-NPMAPLKLEVFDKDT-----------FSKDDSMGEAEIDL 86 (145)
T ss_pred EEEEEECC------EEEEeeeEcCCCCCeecccEEEEec-CCCCEEEEEEEECCC-----------CCCCCEEEEEEEEH
Confidence 46666632 5799999999999999999999876 447899999999995 46799999999999
Q ss_pred ccccccc
Q 010107 81 SQIVTRK 87 (518)
Q Consensus 81 ~~l~~~~ 87 (518)
.+++.+.
T Consensus 87 ~~l~~~~ 93 (145)
T cd04038 87 EPLVEAA 93 (145)
T ss_pred HHhhhhh
Confidence 9998764
No 176
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=98.88 E-value=1.7e-08 Score=89.01 Aligned_cols=98 Identities=23% Similarity=0.303 Sum_probs=72.8
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCC-CCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEe
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSL-NPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCT 79 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~l-NP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~ 79 (518)
||.|++.....++....||++++++. ||.|+|+|.+.........|+|+|||.+. . ++++||++.++
T Consensus 28 yv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~~-----------~-~~~~iG~~~~~ 95 (128)
T cd00275 28 YVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDEDS-----------G-DDDFLGQACLP 95 (128)
T ss_pred EEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCCC-----------C-CCcEeEEEEEE
Confidence 46677765322145789999998876 99999999999887677789999999984 3 78999999999
Q ss_pred ccccccccceeEEEeccCCcccccccccCCCCCCCCcccceeeeece
Q 010107 80 LSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAE 126 (518)
Q Consensus 80 L~~l~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e 126 (518)
|++|.. ...+++|.++ .+ +....|.|.+.++
T Consensus 96 l~~l~~---g~~~~~l~~~-----------~~--~~~~~~~l~v~~~ 126 (128)
T cd00275 96 LDSLRQ---GYRHVPLLDS-----------KG--EPLELSTLFVHID 126 (128)
T ss_pred hHHhcC---ceEEEEecCC-----------CC--CCCcceeEEEEEE
Confidence 999953 2356788652 11 2244678777654
No 177
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.88 E-value=7.8e-09 Score=90.62 Aligned_cols=79 Identities=19% Similarity=0.314 Sum_probs=62.6
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||+|++.. .+++||+++++++||+|++.|.+.... ..+.|+|+|||.+. ++++++||+++++|
T Consensus 25 Yv~v~~~~-----~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~~L~v~v~d~~~-----------~~~d~~IG~~~~~l 87 (120)
T cd04045 25 YVRVLVNG-----IVKGRTVTISNTLNPVWDEVLYVPVTS-PNQKITLEVMDYEK-----------VGKDRSLGSVEINV 87 (120)
T ss_pred EEEEEECC-----EEeeceeEECCCcCCccCceEEEEecC-CCCEEEEEEEECCC-----------CCCCCeeeEEEEeH
Confidence 46666632 268999999999999999999887653 34789999999985 36789999999999
Q ss_pred cccccccceeEEEeccC
Q 010107 81 SQIVTRKNRSLTLDLVR 97 (518)
Q Consensus 81 ~~l~~~~~~~~~~~L~~ 97 (518)
.+++.. ...-|+.|-+
T Consensus 88 ~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 88 SDLIKK-NEDGKYVEYD 103 (120)
T ss_pred HHhhCC-CCCceEEecC
Confidence 999876 3455555533
No 178
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.87 E-value=7.3e-09 Score=91.33 Aligned_cols=70 Identities=19% Similarity=0.210 Sum_probs=58.3
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||.|+... .....||+++++++||+|+++|.+.+.....+.|.|+|||.|. ++++++||++.++|
T Consensus 24 Yv~v~~~~----~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~-----------~~~dd~iG~~~i~l 88 (124)
T cd04037 24 YLKIKLGK----KKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDL-----------LGSDDLIGETVIDL 88 (124)
T ss_pred EEEEEECC----eeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCC-----------CCCCceeEEEEEee
Confidence 46666632 2355899999999999999999999877777899999999994 46899999999999
Q ss_pred ccccc
Q 010107 81 SQIVT 85 (518)
Q Consensus 81 ~~l~~ 85 (518)
++...
T Consensus 89 ~~~~~ 93 (124)
T cd04037 89 EDRFF 93 (124)
T ss_pred ccccc
Confidence 98764
No 179
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=98.87 E-value=4e-09 Score=92.33 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=63.2
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCce-eEEEEEEEEecCCcccccccccCccCcceeEEEEEe
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVV-QTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCT 79 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~-q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~ 79 (518)
||.|++-....+ ....||+++++++||+|+|+|.|.+..+.. ..|.|.|||.|.. ..++++||++.++
T Consensus 35 YVkv~l~p~~~~-~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~----------~~~~~~lG~~~i~ 103 (119)
T cd08685 35 YVKISLSPDKEV-RFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK----------SRDSGLLGCMSFG 103 (119)
T ss_pred eEEEEEEeCCCC-cceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC----------cCCCEEEEEEEec
Confidence 466776552221 356799999999999999999998754332 3789999999853 2357999999999
Q ss_pred ccccccccceeEEEec
Q 010107 80 LSQIVTRKNRSLTLDL 95 (518)
Q Consensus 80 L~~l~~~~~~~~~~~L 95 (518)
|.++.......-|+.|
T Consensus 104 l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 104 VKSIVNQKEISGWYYL 119 (119)
T ss_pred HHHhccCccccceEeC
Confidence 9999865555677765
No 180
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=98.87 E-value=1e-08 Score=88.83 Aligned_cols=88 Identities=18% Similarity=0.254 Sum_probs=59.2
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||.+++.. .++..+.+||+++++|+||+|+|.|.+... ..+.|++.|||++......+ ..++|+.||.+.+.|
T Consensus 18 YV~l~v~~-~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~~d----~~~~d~~~G~g~i~L 90 (118)
T cd08686 18 YCTLEVDS-FGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVKLD----GEGTDAIMGKGQIQL 90 (118)
T ss_pred EEEEEEcC-ccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccccc----ccCcccEEEEEEEEE
Confidence 56666654 233357999999999999999999998864 57899999999842100000 346899997776665
Q ss_pred --cccccccceeEEEec
Q 010107 81 --SQIVTRKNRSLTLDL 95 (518)
Q Consensus 81 --~~l~~~~~~~~~~~L 95 (518)
..+.....+...+.|
T Consensus 91 d~~~~~~~~~~~~~~~~ 107 (118)
T cd08686 91 DPQSLQTKKWQEKVISM 107 (118)
T ss_pred CHHHhccCCeeEEEEEe
Confidence 334444434444443
No 181
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=98.86 E-value=5.7e-09 Score=92.02 Aligned_cols=70 Identities=24% Similarity=0.376 Sum_probs=59.4
Q ss_pred EEEeeeeeeCCCCCceeeEEEEE-EEeCc--eeEEEEEEEEecCCcccccccccCccCcceeEEEEEeccccccccceeE
Q 010107 15 EVGRTEVVLNSLNPTWITKHIIT-YQFEV--VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSL 91 (518)
Q Consensus 15 ev~rTevi~~~lNP~f~~~f~~~-~~fe~--~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~~~~~~~ 91 (518)
...||+|+++ +||+|+|+|.|+ ...+. ...|+|.|||.|. ++++++||++.++|+++........
T Consensus 51 ~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~-----------~~~~~~lG~~~i~L~~l~~~~~~~~ 118 (124)
T cd08389 51 QRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER-----------MRKERLIGEKVVPLSQLNLEGETTV 118 (124)
T ss_pred ceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC-----------cccCceEEEEEEeccccCCCCCceE
Confidence 4679999888 999999999997 55433 3489999999994 4689999999999999987778899
Q ss_pred EEecc
Q 010107 92 TLDLV 96 (518)
Q Consensus 92 ~~~L~ 96 (518)
|++|+
T Consensus 119 w~~L~ 123 (124)
T cd08389 119 WLTLE 123 (124)
T ss_pred EEeCC
Confidence 99985
No 182
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=98.85 E-value=8.4e-09 Score=88.97 Aligned_cols=80 Identities=13% Similarity=0.169 Sum_probs=62.3
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCc----eeEEEEEEEEecCCcccccccccCccCcceeEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV----VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEA 76 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~----~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~ 76 (518)
||.|.+.. +..||+++++++||.|++.|.|...... .+.|.|+|||.+. ++++++||++
T Consensus 24 yv~v~~~~------~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~-----------~~~~~~iG~~ 86 (111)
T cd04011 24 VVKVEVGG------QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS-----------LRSDTLIGSF 86 (111)
T ss_pred EEEEEECC------EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc-----------cccCCccEEE
Confidence 45666642 3569999999999999999998875433 3589999999984 4579999999
Q ss_pred EEeccccccccce---eEEEeccC
Q 010107 77 TCTLSQIVTRKNR---SLTLDLVR 97 (518)
Q Consensus 77 ~~~L~~l~~~~~~---~~~~~L~~ 97 (518)
.++|+++...+.+ ..|++|.+
T Consensus 87 ~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 87 KLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred EECCccccCCCCCcceEEEEEeeC
Confidence 9999999866543 45888743
No 183
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=98.85 E-value=4.6e-09 Score=93.54 Aligned_cols=81 Identities=19% Similarity=0.292 Sum_probs=62.4
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCce--eEEEEEEEEecCCcccccccccCccCcceeEEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVV--QTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATC 78 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~--q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~ 78 (518)
||.|++.. ++.+....||+++++++||+|+++|.|.+..+.. ..|.|+|||.|. .+++++||++.+
T Consensus 37 yV~v~l~~-~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~-----------~~~~~~lG~~~i 104 (133)
T cd08384 37 FVKLYLKP-DAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDI-----------GKSNDYIGGLQL 104 (133)
T ss_pred EEEEEEEc-CCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCC-----------CCCccEEEEEEE
Confidence 56777764 3445678999999999999999999998875533 489999999985 357899999999
Q ss_pred eccccccccceeEEEec
Q 010107 79 TLSQIVTRKNRSLTLDL 95 (518)
Q Consensus 79 ~L~~l~~~~~~~~~~~L 95 (518)
++... ......|.++
T Consensus 105 ~l~~~--~~~~~~W~~~ 119 (133)
T cd08384 105 GINAK--GERLRHWLDC 119 (133)
T ss_pred ecCCC--CchHHHHHHH
Confidence 99862 2234456655
No 184
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=98.84 E-value=1.1e-08 Score=90.05 Aligned_cols=80 Identities=25% Similarity=0.433 Sum_probs=65.2
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeC-CCCCceeeEEEEEEEeC---ceeEEEEEEEEecCCcccccccccCccCcceeEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLN-SLNPTWITKHIITYQFE---VVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEA 76 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~-~lNP~f~~~f~~~~~fe---~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~ 76 (518)
||+|++.. ...+|+++++ ++||.|++.|.+.+... ..+.|.|+|||.+. +.++++||++
T Consensus 25 yv~v~~~~------~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~-----------~~~d~~iG~~ 87 (124)
T cd04049 25 YVIIQCRT------QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN-----------FSDDDFIGEA 87 (124)
T ss_pred eEEEEECC------EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc-----------CCCCCeEEEE
Confidence 46666632 3569999885 99999999999988755 25789999999984 3579999999
Q ss_pred EEeccccccccceeEEEeccC
Q 010107 77 TCTLSQIVTRKNRSLTLDLVR 97 (518)
Q Consensus 77 ~~~L~~l~~~~~~~~~~~L~~ 97 (518)
.++|++++.......|++|..
T Consensus 88 ~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 88 TIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred EEEhHHhhhCCCCcCceEeec
Confidence 999999998777788888865
No 185
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=98.83 E-value=3.4e-08 Score=89.26 Aligned_cols=84 Identities=12% Similarity=0.143 Sum_probs=65.7
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||.|.+.+ ..++||.++.+++||.|+|.|.|..- .....|.|.||+.+.... ...++++||.+.+++
T Consensus 30 Y~~i~Ld~-----~~vaRT~v~~~~~nP~W~E~F~f~~~-~~~~~l~v~v~k~~~~~~-------~~~~~~~IG~V~Ip~ 96 (146)
T cd04013 30 YCELCLDK-----TLYARTTSKLKTDTLFWGEHFEFSNL-PPVSVITVNLYRESDKKK-------KKDKSQLIGTVNIPV 96 (146)
T ss_pred eEEEEECC-----EEEEEEEEEcCCCCCcceeeEEecCC-CcccEEEEEEEEccCccc-------cccCCcEEEEEEEEH
Confidence 57777743 47899999999999999999988532 234679999997664310 123689999999999
Q ss_pred cccccccceeEEEeccC
Q 010107 81 SQIVTRKNRSLTLDLVR 97 (518)
Q Consensus 81 ~~l~~~~~~~~~~~L~~ 97 (518)
.+|.......-|++|.+
T Consensus 97 ~~l~~~~~ve~Wfpl~~ 113 (146)
T cd04013 97 TDVSSRQFVEKWYPVST 113 (146)
T ss_pred HHhcCCCcccEEEEeec
Confidence 99998777889999966
No 186
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=98.82 E-value=2.4e-09 Score=95.91 Aligned_cols=83 Identities=13% Similarity=0.169 Sum_probs=64.7
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCce--eEEEEEEEEecCCcccccccccCccCcceeEEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVV--QTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATC 78 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~--q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~ 78 (518)
||.|++.. +++.....||+|+++++||+|+|+|.|.+..+.. ..|.|+|||.|. ++++++||++.+
T Consensus 39 yv~v~l~~-~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~-----------~~~~~~iG~~~~ 106 (136)
T cd08404 39 YVKVNLYY-GKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR-----------VTKNEVIGRLVL 106 (136)
T ss_pred EEEEEEEc-CCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCC-----------CCCCccEEEEEE
Confidence 46677754 3555677899999999999999999998765443 478999999995 468999999999
Q ss_pred eccccccccceeEEEeccC
Q 010107 79 TLSQIVTRKNRSLTLDLVR 97 (518)
Q Consensus 79 ~L~~l~~~~~~~~~~~L~~ 97 (518)
++.. . ..+...|.+|..
T Consensus 107 ~~~~-~-~~~~~~w~~l~~ 123 (136)
T cd08404 107 GPKA-S-GSGGHHWKEVCN 123 (136)
T ss_pred CCcC-C-CchHHHHHHHHh
Confidence 9998 3 345666777643
No 187
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=98.79 E-value=2.4e-08 Score=87.59 Aligned_cols=77 Identities=16% Similarity=0.216 Sum_probs=60.4
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEec
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 80 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L 80 (518)
||+|.+.+ +..||.++++ .||.|++.|.|... +..+.|.|+|||.|. ..|||||++.++|
T Consensus 23 YV~Ik~g~------~k~kT~v~~~-~nP~WnE~F~F~~~-~~~~~L~v~V~dkd~------------~~DD~lG~v~i~L 82 (127)
T cd08394 23 YVTLKVQN------VKSTTIAVRG-SQPCWEQDFMFEIN-RLDLGLVIELWNKGL------------IWDTLVGTVWIPL 82 (127)
T ss_pred eEEEEECC------EEeEeeECCC-CCCceeeEEEEEEc-CCCCEEEEEEEeCCC------------cCCCceEEEEEEh
Confidence 46666632 4689999988 49999999998875 334459999999883 2799999999999
Q ss_pred cccccccce--eEEEeccC
Q 010107 81 SQIVTRKNR--SLTLDLVR 97 (518)
Q Consensus 81 ~~l~~~~~~--~~~~~L~~ 97 (518)
+++..+... ..|++|..
T Consensus 83 ~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 83 STIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred HHcccCCCCCCCccEecCh
Confidence 999865443 78998854
No 188
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.78 E-value=6.4e-08 Score=80.07 Aligned_cols=90 Identities=28% Similarity=0.415 Sum_probs=73.4
Q ss_pred EEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCCCC
Q 010107 136 ELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGK 214 (518)
Q Consensus 136 ~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~~~ 214 (518)
+.+++|++|......+..+||+++.....+ ...++|+++.++.||.|++ |.+++... ....|.|+|||.+..+.
T Consensus 4 i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~---~~~~~T~~~~~~~~P~w~e~~~~~~~~~--~~~~l~i~v~~~~~~~~ 78 (101)
T smart00239 4 VKIISARNLPKKDKKGKSDPYVKVSLDGDP---KEKKKTKVVKNTLNPVWNETFEFEVPPP--ELAELEIEVYDKDRFGR 78 (101)
T ss_pred EEEEEeeCCCCCCCCCCCCceEEEEEeCCc---cceEeeeEecCCCCCcccceEEEEecCc--ccCEEEEEEEecCCccC
Confidence 456889999887766788999999987431 4579999999999999997 66555432 16889999999998888
Q ss_pred CcceEEEEEechhhhh
Q 010107 215 HDLIGKVQKSLADLEK 230 (518)
Q Consensus 215 ~d~IG~~~i~l~~L~~ 230 (518)
+.++|.+.+++.++..
T Consensus 79 ~~~~G~~~~~l~~~~~ 94 (101)
T smart00239 79 DDFIGQVTIPLSDLLL 94 (101)
T ss_pred CceeEEEEEEHHHccc
Confidence 8999999999999853
No 189
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.78 E-value=2.6e-08 Score=90.75 Aligned_cols=61 Identities=25% Similarity=0.367 Sum_probs=52.2
Q ss_pred EEeeeeeeCCCCCceeeEEEEEEEeC-ceeEEEEEEEEecCCcccccccccCccCcceeEEEEEecccccccc
Q 010107 16 VGRTEVVLNSLNPTWITKHIITYQFE-VVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRK 87 (518)
Q Consensus 16 v~rTevi~~~lNP~f~~~f~~~~~fe-~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~~~ 87 (518)
..||+++++++||+|+|.|.|..... ..+.|.|+|||.|. .+++|+||.+.++|.+|....
T Consensus 47 ~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~v~D~d~-----------~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 47 KVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWDR-----------VGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred eeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEEEEECCC-----------CCCCCEEEEEEEeHHHhccCC
Confidence 35999999999999999999986543 34699999999995 368999999999999997653
No 190
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=98.76 E-value=1.2e-08 Score=91.33 Aligned_cols=71 Identities=17% Similarity=0.307 Sum_probs=57.1
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCcee--EEEEEEEEecCCcccccccccCccCcceeEEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQ--TLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATC 78 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q--~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~ 78 (518)
||.|++.. .+++.+..||+++++++||+|+++|.|.+..+..+ .|+|+|||.|. ++++++||++.+
T Consensus 39 yv~v~l~~-~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~-----------~~~~~~iG~~~i 106 (136)
T cd08402 39 YVKIHLMQ-NGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDR-----------IGKNDPIGKVVL 106 (136)
T ss_pred eEEEEEEE-CCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCC-----------CCCCceeEEEEE
Confidence 46666653 34556788999999999999999999987655433 79999999995 468999999999
Q ss_pred ecccc
Q 010107 79 TLSQI 83 (518)
Q Consensus 79 ~L~~l 83 (518)
++...
T Consensus 107 ~~~~~ 111 (136)
T cd08402 107 GCNAT 111 (136)
T ss_pred CCccC
Confidence 98753
No 191
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=98.74 E-value=1.1e-07 Score=78.17 Aligned_cols=87 Identities=25% Similarity=0.449 Sum_probs=72.1
Q ss_pred EEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCCCC
Q 010107 136 ELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGK 214 (518)
Q Consensus 136 ~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~~~ 214 (518)
+.+++|++|+.....+..+||+.+...+ ...++|+++.++.||.|++ |.+.+... ....|.|+||+++..++
T Consensus 3 v~i~~~~~l~~~~~~~~~~~~v~v~~~~-----~~~~~T~~~~~~~~P~w~~~~~~~~~~~--~~~~l~i~v~~~~~~~~ 75 (102)
T cd00030 3 VTVIEARNLPAKDLNGKSDPYVKVSLGG-----KQKFKTKVVKNTLNPVWNETFEFPVLDP--ESDTLTVEVWDKDRFSK 75 (102)
T ss_pred EEEEeeeCCCCcCCCCCCCcEEEEEecc-----CceEecceeCCCCCCcccceEEEEccCC--CCCEEEEEEEecCCCCC
Confidence 4467889998766777899999999863 3578999999999999998 66555431 36789999999998888
Q ss_pred CcceEEEEEechhhh
Q 010107 215 HDLIGKVQKSLADLE 229 (518)
Q Consensus 215 ~d~IG~~~i~l~~L~ 229 (518)
+++||.+.+++.++.
T Consensus 76 ~~~ig~~~~~l~~l~ 90 (102)
T cd00030 76 DDFLGEVEIPLSELL 90 (102)
T ss_pred CceeEEEEEeHHHhh
Confidence 899999999999996
No 192
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=98.71 E-value=1.1e-08 Score=90.94 Aligned_cols=83 Identities=16% Similarity=0.197 Sum_probs=66.1
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCc--eeEEEEEEEEecCCcccccccccCccCcceeEEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATC 78 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~--~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~ 78 (518)
||.|++.. .+.+....||++++++.||.|+++|.|.+..+. ...|+|+|||.+. .+++++||++.+
T Consensus 38 yv~v~l~~-~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~-----------~~~~~~lG~~~i 105 (134)
T cd00276 38 YVKVSLLQ-GGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS-----------VGRNEVIGQVVL 105 (134)
T ss_pred EEEEEEEc-CCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCC-----------CCCCceeEEEEE
Confidence 45666654 345677889999999999999999999876554 4689999999995 357999999999
Q ss_pred eccccccccceeEEEeccC
Q 010107 79 TLSQIVTRKNRSLTLDLVR 97 (518)
Q Consensus 79 ~L~~l~~~~~~~~~~~L~~ 97 (518)
+|++ ...+...|++|.+
T Consensus 106 ~l~~--~~~~~~~W~~l~~ 122 (134)
T cd00276 106 GPDS--GGEELEHWNEMLA 122 (134)
T ss_pred CCCC--CCcHHHHHHHHHh
Confidence 9999 4445677777754
No 193
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=98.71 E-value=1.9e-08 Score=90.06 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=61.5
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCc--eeEEEEEEEEecCCcccccccccCccCcceeEEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATC 78 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~--~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~ 78 (518)
||.|++.. .+...+..||+++++++||+|++.|.|.+..+. ...|.|+|||.|. ++++++||++.+
T Consensus 39 yV~v~l~~-~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~-----------~~~~~~lG~~~i 106 (136)
T cd08405 39 YVKVWLMY-KDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDR-----------LSRNDLIGKIYL 106 (136)
T ss_pred eEEEEEEe-CCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCC-----------CCCCcEeEEEEE
Confidence 46677653 233456789999999999999999999876543 3489999999994 468999999999
Q ss_pred eccccccccceeEEEec
Q 010107 79 TLSQIVTRKNRSLTLDL 95 (518)
Q Consensus 79 ~L~~l~~~~~~~~~~~L 95 (518)
++.+. ......|.+|
T Consensus 107 ~~~~~--~~~~~~w~~~ 121 (136)
T cd08405 107 GWKSG--GLELKHWKDM 121 (136)
T ss_pred CCccC--CchHHHHHHH
Confidence 99876 2234455555
No 194
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=98.69 E-value=1.4e-07 Score=81.69 Aligned_cols=94 Identities=21% Similarity=0.268 Sum_probs=64.3
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCc--eeEEEEEEEEecCCcccccccccCccCcceeEEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATC 78 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~--~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~ 78 (518)
||+|++.+ .+++||.++++ +||+|+++|.+...-++ ...|.|.|||.+. ..++.++|.+.+
T Consensus 21 yv~v~~~~-----~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~-----------~~~~~~~g~v~l 83 (117)
T cd08383 21 YCTVSLDQ-----VEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS-----------KDRDIVIGKVAL 83 (117)
T ss_pred eEEEEECC-----EEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEeccc-----------CCCeeEEEEEEe
Confidence 57777743 35789999999 99999999998876443 2356666676653 245677777665
Q ss_pred eccccccccceeEEEeccCCcccccccccCCCCCCCCcccceeeeece
Q 010107 79 TLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAE 126 (518)
Q Consensus 79 ~L~~l~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e 126 (518)
. .+........|++|.+. .. .....|+|++.+.
T Consensus 84 ~--~~~~~~~~~~w~~L~~~-----------~~--~~~~~G~l~l~~~ 116 (117)
T cd08383 84 S--KLDLGQGKDEWFPLTPV-----------DP--DSEVQGSVRLRAR 116 (117)
T ss_pred c--CcCCCCcceeEEECccC-----------CC--CCCcCceEEEEEE
Confidence 4 44445667889999662 11 1245799988764
No 195
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=98.69 E-value=2.8e-08 Score=88.95 Aligned_cols=68 Identities=15% Similarity=0.308 Sum_probs=53.8
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCcee--EEEEEEEEecCCcccccccccCccCcceeEEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQ--TLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATC 78 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q--~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~ 78 (518)
||.|++.. ++++....||+++++|+||+|+|+|.|.+..+..+ .|+|+|||.|. .+++++||++.+
T Consensus 38 yV~v~l~~-~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~-----------~~~~~~iG~~~l 105 (135)
T cd08410 38 FVKIQLVH-GLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNV-----------KSSNDFIGRIVI 105 (135)
T ss_pred EEEEEEEc-CCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCC-----------CCCCcEEEEEEE
Confidence 46677643 34456678999999999999999999988655544 69999999985 368999999875
Q ss_pred ec
Q 010107 79 TL 80 (518)
Q Consensus 79 ~L 80 (518)
..
T Consensus 106 ~~ 107 (135)
T cd08410 106 GQ 107 (135)
T ss_pred cC
Confidence 43
No 196
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=98.68 E-value=2.4e-08 Score=89.07 Aligned_cols=81 Identities=20% Similarity=0.283 Sum_probs=61.1
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCcee--EEEEEEEEecCCcccccccccCccCcceeEEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQ--TLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATC 78 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q--~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~ 78 (518)
||.|++.. .+++....||+++++++||+|++.|.|.+..+..+ .|.|+|||.|. ++++++||++.+
T Consensus 38 yvkv~l~~-~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~-----------~~~~~~IG~~~l 105 (134)
T cd08403 38 YVKVSLMC-EGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDR-----------VGHNELIGVCRV 105 (134)
T ss_pred eEEEEEEe-CCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC-----------CCCCceeEEEEE
Confidence 46666653 45556788999999999999999999987655443 69999999995 467999999999
Q ss_pred eccccccccceeEEEec
Q 010107 79 TLSQIVTRKNRSLTLDL 95 (518)
Q Consensus 79 ~L~~l~~~~~~~~~~~L 95 (518)
++... ..+...|.++
T Consensus 106 ~~~~~--~~~~~~w~~~ 120 (134)
T cd08403 106 GPNAD--GQGREHWNEM 120 (134)
T ss_pred CCCCC--CchHHHHHHH
Confidence 87632 2334556555
No 197
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=3.1e-08 Score=104.52 Aligned_cols=112 Identities=15% Similarity=0.271 Sum_probs=82.7
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCC
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 212 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~ 212 (518)
....+++|++|..+|-.|+||||+..... ....+|++|...+||+|+| |.|..+ +....|++.|||.|..
T Consensus 297 itltvlcaqgl~akdktg~sdpyvt~qv~------ktkrrtrti~~~lnpvw~ekfhfech---nstdrikvrvwded~d 367 (1283)
T KOG1011|consen 297 ITLTVLCAQGLIAKDKTGKSDPYVTAQVG------KTKRRTRTIHQELNPVWNEKFHFECH---NSTDRIKVRVWDEDND 367 (1283)
T ss_pred eEEeeeecccceecccCCCCCCcEEEeec------ccchhhHhhhhccchhhhhheeeeec---CCCceeEEEEecCccc
Confidence 33446899999999999999999988764 2468999999999999999 665554 3456799999998864
Q ss_pred -----------CCCcceEEEEEechhhhhccCCCceEEeecccccCCCCCccccceEEEE
Q 010107 213 -----------GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 261 (518)
Q Consensus 213 -----------~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~~~~k~~~k~~~G~i~l~ 261 (518)
.++||+|+..+.+..|. ....-||.|-... .++. ++|.|++.
T Consensus 368 lksklrqkl~resddflgqtvievrtls--gemdvwynlekrt---dksa--vsgairlh 420 (1283)
T KOG1011|consen 368 LKSKLRQKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRT---DKSA--VSGAIRLH 420 (1283)
T ss_pred HHHHHHHHhhhcccccccceeEEEEecc--cchhhhcchhhcc---chhh--ccceEEEE
Confidence 46899999999888873 2223345442221 1221 48999885
No 198
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=98.67 E-value=3.2e-08 Score=88.82 Aligned_cols=81 Identities=16% Similarity=0.257 Sum_probs=61.5
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCce--eEEEEEEEEecCCcccccccccCccCcceeEEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVV--QTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATC 78 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~--q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~ 78 (518)
||-|++.. +++.....||+++++++||+|||+|.|.+..+.. -.|.|+|||.|. ++++|+||++.+
T Consensus 41 YVKv~l~~-~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~-----------~~~~d~iG~v~l 108 (138)
T cd08407 41 SVKVTLKH-QNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDS-----------PGQSLPLGRCSL 108 (138)
T ss_pred EEEEEEEc-CCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCC-----------CcCcceeceEEe
Confidence 46677765 3344567899999999999999999999876544 369999999995 468999999999
Q ss_pred eccccccccceeEEEec
Q 010107 79 TLSQIVTRKNRSLTLDL 95 (518)
Q Consensus 79 ~L~~l~~~~~~~~~~~L 95 (518)
.+.. ...+...|.++
T Consensus 109 g~~~--~g~~~~hW~~m 123 (138)
T cd08407 109 GLHT--SGTERQHWEEM 123 (138)
T ss_pred cCcC--CCcHHHHHHHH
Confidence 9864 23334455544
No 199
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=98.66 E-value=6.7e-07 Score=82.50 Aligned_cols=149 Identities=14% Similarity=0.152 Sum_probs=106.4
Q ss_pred eeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEecCCCCCC
Q 010107 281 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSY 360 (518)
Q Consensus 281 ~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~ 360 (518)
.++++.+|.|+| |.. ...+.|-.++..++..+..+..+.+++|+...... ++.
T Consensus 3 ~~v~~vlD~S~S------------M~~----~~~~~~~~al~~~l~~l~~~~~~~l~~Fs~~~~~~-----~~~------ 55 (171)
T cd01461 3 KEVVFVIDTSGS------------MSG----TKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEEF-----SPS------ 55 (171)
T ss_pred ceEEEEEECCCC------------CCC----hhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCceee-----cCc------
Confidence 478999999997 432 34777777888888888777789999998872110 110
Q ss_pred CcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcCCHHHHHHHHHHccCCCeE
Q 010107 361 CEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLPLS 440 (518)
Q Consensus 361 ~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~lPls 440 (518)
+...+.+.+ +...+.+..+.+.|.|++...|..+.+..... ...--.+++||||..++-.++.+++.++.+.++.
T Consensus 56 ~~~~~~~~~-~~~~~~l~~~~~~g~T~l~~al~~a~~~l~~~----~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~i~ 130 (171)
T cd01461 56 SVSATAENV-AAAIEYVNRLQALGGTNMNDALEAALELLNSS----PGSVPQIILLTDGEVTNESQILKNVREALSGRIR 130 (171)
T ss_pred ceeCCHHHH-HHHHHHHHhcCCCCCcCHHHHHHHHHHhhccC----CCCccEEEEEeCCCCCCHHHHHHHHHHhcCCCce
Confidence 011122222 23344555666789999999999988766531 2345688999999998888888999888877999
Q ss_pred EEEEecCC-CcchhhhhcccCC
Q 010107 441 ILIIGVGG-ADFKEMEILDADK 461 (518)
Q Consensus 441 iiiVGvG~-~~f~~m~~ld~d~ 461 (518)
|..||+|. .+...|+.+-...
T Consensus 131 i~~i~~g~~~~~~~l~~ia~~~ 152 (171)
T cd01461 131 LFTFGIGSDVNTYLLERLAREG 152 (171)
T ss_pred EEEEEeCCccCHHHHHHHHHcC
Confidence 99999997 4788888888443
No 200
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=98.62 E-value=7.9e-08 Score=86.38 Aligned_cols=71 Identities=14% Similarity=0.305 Sum_probs=56.8
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCcee--EEEEEEEEecCCcccccccccCccCcceeEEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQ--TLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATC 78 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q--~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~ 78 (518)
||.|++...+++.....||+++++++||+|+|+|.|.+..+..+ .|.|.|||.|. ++++++||++.+
T Consensus 39 yVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~-----------~~~~~~iG~v~l 107 (138)
T cd08408 39 YVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRK-----------MKRKEMIGWFSL 107 (138)
T ss_pred eEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCC-----------CCCCcEEEEEEE
Confidence 46677765455555567999999999999999999998755443 89999999995 468999999888
Q ss_pred eccc
Q 010107 79 TLSQ 82 (518)
Q Consensus 79 ~L~~ 82 (518)
.+..
T Consensus 108 ~~~~ 111 (138)
T cd08408 108 GLNS 111 (138)
T ss_pred CCcC
Confidence 7764
No 201
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=98.60 E-value=5.7e-08 Score=87.02 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=58.6
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCce--eEEEEEEEEecCCcccccccccCccCcceeEEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVV--QTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATC 78 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~--q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~ 78 (518)
||.|++.. +++-....||.|+++++||+|||+|.|.+..+.. ..|+|+|||.|. ++++++||++.+
T Consensus 39 yVkv~l~~-~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~-----------~~~~~~iG~v~l 106 (136)
T cd08406 39 FVKVYLLQ-DGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE-----------DGKTPNVGHVII 106 (136)
T ss_pred EEEEEEEe-CCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC-----------CCCCCeeEEEEE
Confidence 46677765 2332345689999999999999999998765433 489999999995 468999999998
Q ss_pred eccccccccceeEEEec
Q 010107 79 TLSQIVTRKNRSLTLDL 95 (518)
Q Consensus 79 ~L~~l~~~~~~~~~~~L 95 (518)
.... ...+...|.++
T Consensus 107 g~~~--~g~~~~hW~~m 121 (136)
T cd08406 107 GPAA--SGMGLSHWNQM 121 (136)
T ss_pred CCCC--CChhHHHHHHH
Confidence 6543 33344445444
No 202
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=98.56 E-value=8e-07 Score=83.69 Aligned_cols=156 Identities=17% Similarity=0.133 Sum_probs=103.1
Q ss_pred eeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccccc---CCCCcceeeecccCCCCCceeEEecCCC
Q 010107 281 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYD---SDKRFPAWGFGARPIDGPVSHCFNLNGS 357 (518)
Q Consensus 281 ~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd---~d~~~~~~gFG~~~~~~~~~~~f~l~~~ 357 (518)
+.+++.+|-|+| |... +.+.++...+..+++.+. ++-++-++.|+... .-.++++..
T Consensus 1 ~Dv~~vlD~SgS------------m~~~---~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~-----~~~~~l~~~ 60 (186)
T cd01471 1 LDLYLLVDGSGS------------IGYS---NWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNA-----KELIRLSSP 60 (186)
T ss_pred CcEEEEEeCCCC------------ccch---hhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCc-----eEEEECCCc
Confidence 368899999997 5422 336667777777777664 34478899998761 113555432
Q ss_pred CCCCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcCCHHHHHHHHHHccCC
Q 010107 358 NSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDL 437 (518)
Q Consensus 358 ~~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~l 437 (518)
. ....+.+.+.-.........+|.|++++.|+.+.+............-.++++||||..++..++.++..++...
T Consensus 61 ~----~~~~~~~~~~i~~l~~~~~~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~~~~~~a~~l~~~ 136 (186)
T cd01471 61 N----STNKDLALNAIRALLSLYYPNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDSKFRTLKEARKLRER 136 (186)
T ss_pred c----ccchHHHHHHHHHHHhCcCCCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCCCcchhHHHHHHHHC
Confidence 1 111222222222333334468999999999999876654211122334578999999988877777777777778
Q ss_pred CeEEEEEecCC-CcchhhhhcccC
Q 010107 438 PLSILIIGVGG-ADFKEMEILDAD 460 (518)
Q Consensus 438 PlsiiiVGvG~-~~f~~m~~ld~d 460 (518)
++.|..||||. .|...|+.|.+.
T Consensus 137 gv~v~~igiG~~~d~~~l~~ia~~ 160 (186)
T cd01471 137 GVIIAVLGVGQGVNHEENRSLVGC 160 (186)
T ss_pred CCEEEEEEeehhhCHHHHHHhcCC
Confidence 99999999997 588888888854
No 203
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.56 E-value=2.5e-08 Score=101.36 Aligned_cols=70 Identities=17% Similarity=0.315 Sum_probs=58.3
Q ss_pred EEEeeeeeeCCCCCceeeEEEEEEEeC-ceeEEEEEEEEecCCcccccccccCccCcceeEEEEEeccccccccceeEEE
Q 010107 15 EVGRTEVVLNSLNPTWITKHIITYQFE-VVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTL 93 (518)
Q Consensus 15 ev~rTevi~~~lNP~f~~~f~~~~~fe-~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~~~~~~~~~ 93 (518)
-..||++|+.+|||+|||+|.+.+.-. ....|.++|||||.+ +++||||+..+.+++|...+ ..-|+
T Consensus 217 sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT-----------sRNDFMGslSFgisEl~K~p-~~GWy 284 (683)
T KOG0696|consen 217 SKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT-----------SRNDFMGSLSFGISELQKAP-VDGWY 284 (683)
T ss_pred hhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccccc-----------ccccccceecccHHHHhhcc-hhhHH
Confidence 456899999999999999999988644 345899999999976 58999999999999998765 34466
Q ss_pred ecc
Q 010107 94 DLV 96 (518)
Q Consensus 94 ~L~ 96 (518)
.|.
T Consensus 285 KlL 287 (683)
T KOG0696|consen 285 KLL 287 (683)
T ss_pred HHh
Confidence 653
No 204
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=98.50 E-value=1.8e-06 Score=79.52 Aligned_cols=152 Identities=23% Similarity=0.275 Sum_probs=105.9
Q ss_pred eeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccC---CCCcceeeecccCCCCCceeEEecCCC
Q 010107 281 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDS---DKRFPAWGFGARPIDGPVSHCFNLNGS 357 (518)
Q Consensus 281 ~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~---d~~~~~~gFG~~~~~~~~~~~f~l~~~ 357 (518)
..+++.||.|.| |. ......+...+..++..+.. +.++-+++|+.. ....+++.
T Consensus 2 ~~v~l~vD~S~S------------M~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~-----~~~~~~~~-- 58 (177)
T smart00327 2 LDVVFLLDGSGS------------MG----PNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDD-----ATVLFPLN-- 58 (177)
T ss_pred ccEEEEEeCCCc------------cc----hHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCC-----ceEEEccc--
Confidence 468999999997 32 13445555555555555544 788999999985 11223321
Q ss_pred CCCCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhc-ccCCceEEEEEEeCCCcCCHHHHHHHHHHccC
Q 010107 358 NSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLA-NHGQKYFVLLIITDGVVTDLQETKDALVKASD 436 (518)
Q Consensus 358 ~~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~-~~~~~y~vlliltdG~i~d~~~t~~~i~~as~ 436 (518)
...+.+.+.++....... ..|.|.+...|+.+.+....... .......+++|+|||...|.+.+.+.+..+..
T Consensus 59 ----~~~~~~~~~~~i~~~~~~--~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~~~~~~~~~~~~~ 132 (177)
T smart00327 59 ----DSRSKDALLEALASLSYK--LGGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDGGDLLKAAKELKR 132 (177)
T ss_pred ----ccCCHHHHHHHHHhcCCC--CCCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCCccHHHHHHHHHH
Confidence 234455565555433322 47889999999999988752211 11223678999999999877778888888888
Q ss_pred CCeEEEEEecCCC-cchhhhhcccCC
Q 010107 437 LPLSILIIGVGGA-DFKEMEILDADK 461 (518)
Q Consensus 437 lPlsiiiVGvG~~-~f~~m~~ld~d~ 461 (518)
.++.|++||+|+. +...|+.|....
T Consensus 133 ~~i~i~~i~~~~~~~~~~l~~~~~~~ 158 (177)
T smart00327 133 SGVKVFVVGVGNDVDEEELKKLASAP 158 (177)
T ss_pred CCCEEEEEEccCccCHHHHHHHhCCC
Confidence 8899999999998 999999999554
No 205
>PLN02223 phosphoinositide phospholipase C
Probab=98.46 E-value=1e-06 Score=94.07 Aligned_cols=105 Identities=17% Similarity=0.197 Sum_probs=76.0
Q ss_pred eEEEEEeecCCCc-----CCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEE
Q 010107 134 TTELILRCSDLDC-----KDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECF 207 (518)
Q Consensus 134 li~~~i~a~~L~~-----~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~ 207 (518)
+.+.+++|++++. .+.....|||++|...+-... ...++|.+..++.||+|++ |.|.+.. ..-..|+|+||
T Consensus 411 L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D-~~~~kT~v~nNg~nPvWne~F~F~i~~--PELAlLrf~V~ 487 (537)
T PLN02223 411 LKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHD-EKIMKTTVKNNEWKPTWGEEFTFPLTY--PDLALISFEVY 487 (537)
T ss_pred EEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCC-cceeEEEeCCCCcCceecceeEEEEEc--cCceEEEEEEE
Confidence 4445688887741 134456899999998752111 2346787888889999998 6666543 22567999999
Q ss_pred eecCCCCCcceEEEEEechhhhhccCCCceEEeeccc
Q 010107 208 NFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLST 244 (518)
Q Consensus 208 D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~ 244 (518)
|+|..++++|+|+..+++.+|+. | -+..+|.+.+
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~--G-yR~VpL~~~~ 521 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIE--G-IRAVPLYDER 521 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcC--C-ceeEeccCCC
Confidence 99998889999999999999964 2 3566776644
No 206
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=98.46 E-value=5.4e-07 Score=72.62 Aligned_cols=63 Identities=21% Similarity=0.394 Sum_probs=53.1
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEAT 77 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~ 77 (518)
||.+++..... ...||++++++.||.|++.|.+.......+.|.|+|||.+. .+++++||++.
T Consensus 23 yv~v~~~~~~~---~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~-----------~~~~~~iG~~~ 85 (85)
T PF00168_consen 23 YVRVSVNGSES---TKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDS-----------FGKDELIGEVK 85 (85)
T ss_dssp EEEEEEETTTC---EEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETS-----------SSSEEEEEEEE
T ss_pred cceeecceeee---eeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCC-----------CCCCCEEEEEC
Confidence 46677766433 68999999999999999999999877778889999999995 35799999974
No 207
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=98.45 E-value=1.4e-07 Score=84.71 Aligned_cols=83 Identities=14% Similarity=0.167 Sum_probs=59.0
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCce--eEEEEEEEEecCCcccccccccCccCcceeEEEEE
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVV--QTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATC 78 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~--q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~ 78 (518)
||-|++... ++-..-.||+++++++||+|+|.|.|....+.. ..|.|+|||.+. .+++++||++.+
T Consensus 38 yVkv~l~~~-~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~-----------~~~~~~lG~v~i 105 (137)
T cd08409 38 YVKVSLMIH-NKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG-----------VRKSKLLGRVVL 105 (137)
T ss_pred EEEEEEEEC-CEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC-----------CCCcceEEEEEE
Confidence 455665542 233456699999999999999999998765544 379999999995 368999999998
Q ss_pred eccccccccceeEEEec
Q 010107 79 TLSQIVTRKNRSLTLDL 95 (518)
Q Consensus 79 ~L~~l~~~~~~~~~~~L 95 (518)
.............|.++
T Consensus 106 g~~~~~~~~~~~hW~~~ 122 (137)
T cd08409 106 GPFMYARGKELEHWNDM 122 (137)
T ss_pred CCcccCCChHHHHHHHH
Confidence 75444333333445444
No 208
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=98.44 E-value=7e-06 Score=77.69 Aligned_cols=157 Identities=15% Similarity=0.202 Sum_probs=104.2
Q ss_pred ceeeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEecCCC-
Q 010107 279 FELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGS- 357 (518)
Q Consensus 279 ~~~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~- 357 (518)
...++++.||.|+| |.. +..+.|-.++..++..+..+..+-++.|+..+. -.+|+...
T Consensus 12 ~p~~vv~llD~SgS------------M~~----~~l~~ak~~~~~ll~~l~~~d~v~lv~F~~~~~-----~~~~~~~~~ 70 (190)
T cd01463 12 SPKDIVILLDVSGS------------MTG----QRLHLAKQTVSSILDTLSDNDFFNIITFSNEVN-----PVVPCFNDT 70 (190)
T ss_pred CCceEEEEEECCCC------------CCc----HHHHHHHHHHHHHHHhCCCCCEEEEEEeCCCee-----EEeeecccc
Confidence 45899999999997 432 356666666667777777777899999998721 11332111
Q ss_pred CCCCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhc---c--cCCceEEEEEEeCCCcCCHHHHHHHHH
Q 010107 358 NSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLA---N--HGQKYFVLLIITDGVVTDLQETKDALV 432 (518)
Q Consensus 358 ~~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~---~--~~~~y~vlliltdG~i~d~~~t~~~i~ 432 (518)
...+.....+ ...+.+..++..|.|++...|+.+.+..+..+. . ....-..+++||||..++..+..+++.
T Consensus 71 ~~~~~~~~~~----~~~~~l~~l~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~ 146 (190)
T cd01463 71 LVQATTSNKK----VLKEALDMLEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPENYKEIFDKYN 146 (190)
T ss_pred eEecCHHHHH----HHHHHHhhCCCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCcHhHHHHHhc
Confidence 0001111222 333456677789999999999998876654210 0 112345789999999988777776665
Q ss_pred Hcc--CCCeEEEEEecCCC--cchhhhhcccC
Q 010107 433 KAS--DLPLSILIIGVGGA--DFKEMEILDAD 460 (518)
Q Consensus 433 ~as--~lPlsiiiVGvG~~--~f~~m~~ld~d 460 (518)
... ..|+.|..||||.+ |...|+.|-..
T Consensus 147 ~~~~~~~~v~i~tigiG~~~~d~~~L~~lA~~ 178 (190)
T cd01463 147 WDKNSEIPVRVFTYLIGREVTDRREIQWMACE 178 (190)
T ss_pred ccccCCCcEEEEEEecCCccccchHHHHHHhh
Confidence 322 35899999999974 68888888744
No 209
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.41 E-value=4.7e-07 Score=109.29 Aligned_cols=80 Identities=19% Similarity=0.205 Sum_probs=65.3
Q ss_pred CEEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeC-ceeEEEEEEEEecCCcccccccccCccCcceeEEEEEe
Q 010107 1 MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE-VVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCT 79 (518)
Q Consensus 1 ~~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe-~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~ 79 (518)
||+|.+... +.-||+|+++|.||+|++.|.+.+... ..++|+++|||+|. + .+|.||.++++
T Consensus 2002 yv~l~~g~~-----~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~-----------f-~kd~~G~~~i~ 2064 (2102)
T PLN03200 2002 FCKLTLGNG-----PPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT-----------F-GKSSLGKVTIQ 2064 (2102)
T ss_pred eEEEEECCC-----CcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc-----------c-CCCCCceEEEE
Confidence 677777642 234899999999999999998877633 34689999999994 3 35599999999
Q ss_pred ccccccccceeEEEeccC
Q 010107 80 LSQIVTRKNRSLTLDLVR 97 (518)
Q Consensus 80 L~~l~~~~~~~~~~~L~~ 97 (518)
|.+++......-|++|.+
T Consensus 2065 l~~vv~~~~~~~~~~L~~ 2082 (2102)
T PLN03200 2065 IDRVVMEGTYSGEYSLNP 2082 (2102)
T ss_pred HHHHhcCceeeeeeecCc
Confidence 999998887888999965
No 210
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=98.40 E-value=8.9e-07 Score=72.65 Aligned_cols=71 Identities=31% Similarity=0.425 Sum_probs=58.3
Q ss_pred EEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEeccccc-cccceeEE
Q 010107 14 VEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIV-TRKNRSLT 92 (518)
Q Consensus 14 ~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~-~~~~~~~~ 92 (518)
...+||+++.+++||.|++.|.+.........|.|+|||.+.. .++.+||.+.+++.++. .......|
T Consensus 31 ~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~-----------~~~~~ig~~~~~l~~l~~~~~~~~~~ 99 (102)
T cd00030 31 KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRF-----------SKDDFLGEVEIPLSELLDSGKEGELW 99 (102)
T ss_pred CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCC-----------CCCceeEEEEEeHHHhhhcCCcCcce
Confidence 3689999999999999999999988754567899999998853 46899999999999998 44445555
Q ss_pred Eec
Q 010107 93 LDL 95 (518)
Q Consensus 93 ~~L 95 (518)
++|
T Consensus 100 ~~l 102 (102)
T cd00030 100 LPL 102 (102)
T ss_pred ecC
Confidence 543
No 211
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.39 E-value=1.2e-07 Score=101.56 Aligned_cols=112 Identities=23% Similarity=0.301 Sum_probs=89.5
Q ss_pred cceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCc-eeeEeeeccccCCCCCceee-eEEee--e
Q 010107 118 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGT-HIPVCKTEVLKNETKPTWKS-VFLNI--Q 193 (518)
Q Consensus 118 ~G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~-~~~~~kTevik~tlnP~W~e-f~~~~--~ 193 (518)
-|.+.+++.|......+++=++.|+++.+.|.+|.|||||.|.+.+.--- -.++.||.|+++|+||+|+| |.|++ +
T Consensus 933 fg~lsvr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e 1012 (1103)
T KOG1328|consen 933 FGVLSVRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPE 1012 (1103)
T ss_pred CCceEEEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCcc
Confidence 57777888776666667777899999999999999999999998753100 13578999999999999999 55444 3
Q ss_pred ccCCCCccEEEEEEeecCCCCCcceEEEEEechhhh
Q 010107 194 QVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLE 229 (518)
Q Consensus 194 ~l~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~ 229 (518)
........|.|+|+|+|-...+||-|++.+.|+++-
T Consensus 1013 ~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1013 PCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred ccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 222235679999999999999999999999888874
No 212
>PLN02952 phosphoinositide phospholipase C
Probab=98.39 E-value=2.4e-06 Score=93.16 Aligned_cols=106 Identities=15% Similarity=0.164 Sum_probs=76.3
Q ss_pred ceEEEEEeecCCCc------CCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEE
Q 010107 133 TTTELILRCSDLDC------KDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIE 205 (518)
Q Consensus 133 ~li~~~i~a~~L~~------~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~ve 205 (518)
.+.+.+++|.+++. .+.+...|||+++...+-.. -....+|+++.++.||+|++ |.|.+.. ..-.-|+|+
T Consensus 471 ~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~-D~~~~kTkvi~nN~nPvWnE~F~F~i~~--PELAllrf~ 547 (599)
T PLN02952 471 TLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPA-DNAKKKTKIIEDNWYPAWNEEFSFPLTV--PELALLRIE 547 (599)
T ss_pred eEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCC-CCcceeeeeccCCCCcccCCeeEEEEEc--CCccEEEEE
Confidence 34455688887642 12334569999998875211 12466999999999999998 6655443 224579999
Q ss_pred EEeecCCCCCcceEEEEEechhhhhccCCCceEEeeccc
Q 010107 206 CFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLST 244 (518)
Q Consensus 206 V~D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~ 244 (518)
|||+|..++++|+|++.+++..|+. | -+..+|.+.+
T Consensus 548 V~D~D~~~~ddfiGq~~lPv~~Lr~--G-yR~VpL~~~~ 583 (599)
T PLN02952 548 VREYDMSEKDDFGGQTCLPVSELRP--G-IRSVPLHDKK 583 (599)
T ss_pred EEecCCCCCCCeEEEEEcchhHhcC--C-ceeEeCcCCC
Confidence 9999998899999999999999965 3 3466776543
No 213
>PLN02228 Phosphoinositide phospholipase C
Probab=98.35 E-value=4.8e-06 Score=90.24 Aligned_cols=126 Identities=17% Similarity=0.252 Sum_probs=86.5
Q ss_pred eEEEEEeecCCCc---C---CCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCce-ee-eEEeeeccCCCCccEEEE
Q 010107 134 TTELILRCSDLDC---K---DLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTW-KS-VFLNIQQVGSKDSPLIIE 205 (518)
Q Consensus 134 li~~~i~a~~L~~---~---d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W-~e-f~~~~~~l~~~~~~L~ve 205 (518)
+.+-+++|++|+. . +.+...||||++.+.+-.. -...++|++++++.||.| ++ |.|++.. ..-.-|+|.
T Consensus 433 L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~-D~~~~rTk~~~n~~nP~W~~e~f~F~~~~--pELA~lRf~ 509 (567)
T PLN02228 433 LKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPR-DTVSYRTETAVDQWFPIWGNDEFLFQLRV--PELALLWFK 509 (567)
T ss_pred EEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCC-CCCcceeeccCCCCCceECCCeEEEEEEc--CceeEEEEE
Confidence 4455688988631 1 2344579999998875211 124579999999999999 76 6655543 224689999
Q ss_pred EEeecCCCCCcceEEEEEechhhhhccCCCceEEeecccccCCCCCccccceEEEEEeeehhhhhh
Q 010107 206 CFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVDKFSESVQYTF 271 (518)
Q Consensus 206 V~D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~~~~k~~~k~~~G~i~l~~~~~~~~~sF 271 (518)
|+|+|..+.++|||++.+++..|+. | -+..+|.+.+. +. ..+.-.+..+.+...++|
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~--G-YR~VpL~~~~G--~~----l~~atLfv~~~~~~~~~~ 566 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKS--G-VRAVRLHDRAG--KA----YKNTRLLVSFALDPPYTF 566 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhC--C-eeEEEccCCCC--CC----CCCeEEEEEEEEcCcccc
Confidence 9999988889999999999999964 2 34566665442 11 134444457777777776
No 214
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.33 E-value=1.7e-06 Score=71.33 Aligned_cols=72 Identities=26% Similarity=0.395 Sum_probs=57.6
Q ss_pred EEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEecc
Q 010107 2 LVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLS 81 (518)
Q Consensus 2 ~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~ 81 (518)
|.|++.... ...+||+++.++.||.|++.|.+.......+.|.|+|||.+.. +.+.++|.+.++|.
T Consensus 25 v~v~~~~~~---~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~-----------~~~~~~G~~~~~l~ 90 (101)
T smart00239 25 VKVSLDGDP---KEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRF-----------GRDDFIGQVTIPLS 90 (101)
T ss_pred EEEEEeCCc---cceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCc-----------cCCceeEEEEEEHH
Confidence 455554321 4689999999999999999998887654478999999999853 46899999999999
Q ss_pred cccccc
Q 010107 82 QIVTRK 87 (518)
Q Consensus 82 ~l~~~~ 87 (518)
++....
T Consensus 91 ~~~~~~ 96 (101)
T smart00239 91 DLLLGG 96 (101)
T ss_pred HcccCc
Confidence 987553
No 215
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=98.31 E-value=9.2e-06 Score=73.68 Aligned_cols=148 Identities=20% Similarity=0.254 Sum_probs=97.5
Q ss_pred eEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccccc---CCCCcceeeecccCCCCCceeEEecCCCC
Q 010107 282 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYD---SDKRFPAWGFGARPIDGPVSHCFNLNGSN 358 (518)
Q Consensus 282 ~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd---~d~~~~~~gFG~~~~~~~~~~~f~l~~~~ 358 (518)
.+++.+|.|+| |.. ..++.+...+..++..+. .+-++.++.|+..+. --+++....
T Consensus 2 di~~llD~S~S------------m~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~-----~~~~~~~~~ 60 (161)
T cd01450 2 DIVFLLDGSES------------VGP----ENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVR-----VEFSLNDYK 60 (161)
T ss_pred cEEEEEeCCCC------------cCH----HHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCce-----EEEECCCCC
Confidence 57889999997 442 245555555555555543 467799999998621 123332211
Q ss_pred CCCcccChHHHHHHHHhhhccceec-CCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcCCHHHHHHHHHHccCC
Q 010107 359 SYCEVEGIPGIMMAYTSALHNVNLA-GPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDL 437 (518)
Q Consensus 359 ~~~~~~g~~~i~~~Y~~~~~~~~~~-gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~l 437 (518)
..+.+.++...... .. |.|++...|+.+.+...+..........++++||||..++..+..+++.+..+.
T Consensus 61 ------~~~~~~~~i~~~~~---~~~~~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~ 131 (161)
T cd01450 61 ------SKDDLLKAVKNLKY---LGGGGTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDGGDPKEAAAKLKDE 131 (161)
T ss_pred ------CHHHHHHHHHhccc---CCCCCccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCCcchHHHHHHHHHC
Confidence 23444443332211 12 479999999999887765421123567789999999987755566666666666
Q ss_pred CeEEEEEecCCCcchhhhhccc
Q 010107 438 PLSILIIGVGGADFKEMEILDA 459 (518)
Q Consensus 438 PlsiiiVGvG~~~f~~m~~ld~ 459 (518)
++-++.||+|+.+.+.|+.|-+
T Consensus 132 ~v~v~~i~~g~~~~~~l~~la~ 153 (161)
T cd01450 132 GIKVFVVGVGPADEEELREIAS 153 (161)
T ss_pred CCEEEEEeccccCHHHHHHHhC
Confidence 9999999999988999988873
No 216
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.30 E-value=4.2e-06 Score=78.17 Aligned_cols=148 Identities=16% Similarity=0.168 Sum_probs=96.8
Q ss_pred eeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccccc---CCCCcceeeecccCCCCCceeEEecCCC
Q 010107 281 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYD---SDKRFPAWGFGARPIDGPVSHCFNLNGS 357 (518)
Q Consensus 281 ~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd---~d~~~~~~gFG~~~~~~~~~~~f~l~~~ 357 (518)
+.+++.||.|+| |... ....-.+|+..+...+...+ .+..+.++.|+... .-.+++...
T Consensus 4 ~~v~~llD~SgS------------M~~~-~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a-----~~~~~l~~~ 65 (176)
T cd01464 4 LPIYLLLDTSGS------------MAGE-PIEALNQGLQMLQSELRQDPYALESVEISVITFDSAA-----RVIVPLTPL 65 (176)
T ss_pred CCEEEEEECCCC------------CCCh-HHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCc-----eEecCCccH
Confidence 678999999997 5533 22344566666655555432 24569999998862 112333210
Q ss_pred CCCCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhcc----c-CCceEEEEEEeCCCcCCHH-HHHHHH
Q 010107 358 NSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLAN----H-GQKYFVLLIITDGVVTDLQ-ETKDAL 431 (518)
Q Consensus 358 ~~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~----~-~~~y~vlliltdG~i~d~~-~t~~~i 431 (518)
. ......+...|.|++...|+.+.+........ . ...-.++++||||..+|-. ...+++
T Consensus 66 ---------~------~~~~~~l~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~ 130 (176)
T cd01464 66 ---------E------SFQPPRLTASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDDLTAAIERI 130 (176)
T ss_pred ---------H------hcCCCcccCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCchHHHHHHHH
Confidence 0 11234566789999999999999876543210 0 1112478999999987644 444777
Q ss_pred HHccCCCeEEEEEecCC-CcchhhhhcccCC
Q 010107 432 VKASDLPLSILIIGVGG-ADFKEMEILDADK 461 (518)
Q Consensus 432 ~~as~lPlsiiiVGvG~-~~f~~m~~ld~d~ 461 (518)
.++...++.|..||||. .|...|++|-+..
T Consensus 131 ~~~~~~~~~i~~igiG~~~~~~~L~~ia~~~ 161 (176)
T cd01464 131 KEARDSKGRIVACAVGPKADLDTLKQITEGV 161 (176)
T ss_pred HhhcccCCcEEEEEeccccCHHHHHHHHCCC
Confidence 77777789999999996 6999999998443
No 217
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.27 E-value=7.1e-07 Score=100.07 Aligned_cols=120 Identities=16% Similarity=0.202 Sum_probs=95.3
Q ss_pred cccceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceeeeE----Ee
Q 010107 116 KHCGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVF----LN 191 (518)
Q Consensus 116 ~~~G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~ef~----~~ 191 (518)
+..|+|.++++|. .+.+.+++.-+++|+-..-....||||+.|+.+ |.++..++||+++++|.||.|||.- ++
T Consensus 1510 ~iggqV~LsIsY~--~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlP-dp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p 1586 (1639)
T KOG0905|consen 1510 EIGGQVKLSISYN--NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLP-DPRKTSKRKTKVVRKTRNPTFNEMLVYDGFP 1586 (1639)
T ss_pred ccCceEEEEEEEc--CceEEEEhhhhcccccccCCCCCCcceeEEecC-CchHhhhhhhccccccCCCchhhheeecCCc
Confidence 4457899988885 467788888999996655556789999999985 4677889999999999999999932 22
Q ss_pred eeccCCCCccEEEEEEeecCCCCCcceEEEEEechhhhhccCCCceEEe
Q 010107 192 IQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 240 (518)
Q Consensus 192 ~~~l~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l 240 (518)
...+ ..+.|.++||..+....+.++|.+.++|.++...+....||.|
T Consensus 1587 ~~~l--~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1587 KEIL--QQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred hhhh--hhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 2222 2589999999999888889999999999998765555567765
No 218
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=98.27 E-value=2.3e-05 Score=70.06 Aligned_cols=146 Identities=17% Similarity=0.261 Sum_probs=100.4
Q ss_pred eEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccC---CCCcceeeecccCCCCCceeEEecCCCC
Q 010107 282 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDS---DKRFPAWGFGARPIDGPVSHCFNLNGSN 358 (518)
Q Consensus 282 ~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~---d~~~~~~gFG~~~~~~~~~~~f~l~~~~ 358 (518)
+++++||.|+| |. ...+..+...+..++..+.. ...+.+++|+..+. ..++++.
T Consensus 2 ~v~~viD~S~S------------m~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~-----~~~~~~~-- 58 (161)
T cd00198 2 DIVFLLDVSGS------------MG----GEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNAR-----VVLPLTT-- 58 (161)
T ss_pred cEEEEEeCCCC------------cC----cchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccc-----eeecccc--
Confidence 68899999997 32 35566666666666666665 67789999987521 1122211
Q ss_pred CCCcccChHHHHHHHHhhhccc--eecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcCCHH-HHHHHHHHcc
Q 010107 359 SYCEVEGIPGIMMAYTSALHNV--NLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQ-ETKDALVKAS 435 (518)
Q Consensus 359 ~~~~~~g~~~i~~~Y~~~~~~~--~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~-~t~~~i~~as 435 (518)
....+.+.+ .+..+ ...|.|++.+.+..+.+...... ......+++++|||..++-. +..+.+..++
T Consensus 59 ----~~~~~~~~~----~~~~~~~~~~~~t~~~~al~~~~~~~~~~~--~~~~~~~lvvitDg~~~~~~~~~~~~~~~~~ 128 (161)
T cd00198 59 ----DTDKADLLE----AIDALKKGLGGGTNIGAALRLALELLKSAK--RPNARRVIILLTDGEPNDGPELLAEAARELR 128 (161)
T ss_pred ----cCCHHHHHH----HHHhcccCCCCCccHHHHHHHHHHHhcccC--CCCCceEEEEEeCCCCCCCcchhHHHHHHHH
Confidence 012223332 22233 36789999999999988876532 24568889999999887654 5666666677
Q ss_pred CCCeEEEEEecCC-CcchhhhhcccC
Q 010107 436 DLPLSILIIGVGG-ADFKEMEILDAD 460 (518)
Q Consensus 436 ~lPlsiiiVGvG~-~~f~~m~~ld~d 460 (518)
...+.|.+||+|+ .+-..++.|++.
T Consensus 129 ~~~v~v~~v~~g~~~~~~~l~~l~~~ 154 (161)
T cd00198 129 KLGITVYTIGIGDDANEDELKEIADK 154 (161)
T ss_pred HcCCEEEEEEcCCCCCHHHHHHHhcc
Confidence 7799999999998 788888888854
No 219
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=98.26 E-value=1.6e-05 Score=72.74 Aligned_cols=146 Identities=14% Similarity=0.205 Sum_probs=94.3
Q ss_pred eeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEecCCCCCC
Q 010107 281 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSY 360 (518)
Q Consensus 281 ~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~ 360 (518)
+++++.+|.|+| |.. +..++|-.++..++..+.++.++-+++|+..... .+|+.. .+
T Consensus 1 ~~v~~vlD~S~S------------M~~----~rl~~ak~a~~~l~~~l~~~~~~~li~F~~~~~~-----~~~~~~--~~ 57 (155)
T cd01466 1 VDLVAVLDVSGS------------MAG----DKLQLVKHALRFVISSLGDADRLSIVTFSTSAKR-----LSPLRR--MT 57 (155)
T ss_pred CcEEEEEECCCC------------CCc----HHHHHHHHHHHHHHHhCCCcceEEEEEecCCccc-----cCCCcc--cC
Confidence 367899999997 542 2344455555555555555556999999986211 122211 01
Q ss_pred CcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcCCHHHHHHHHHHccCCCeE
Q 010107 361 CEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLPLS 440 (518)
Q Consensus 361 ~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~lPls 440 (518)
+ .+ .+...+.+..+.+.|-|++...+..+.+...+.. ....-.++++||||..++. ..+..+.+.++.
T Consensus 58 ~--~~----~~~~~~~i~~~~~~g~T~~~~al~~a~~~~~~~~--~~~~~~~iillTDG~~~~~----~~~~~~~~~~v~ 125 (155)
T cd01466 58 A--KG----KRSAKRVVDGLQAGGGTNVVGGLKKALKVLGDRR--QKNPVASIMLLSDGQDNHG----AVVLRADNAPIP 125 (155)
T ss_pred H--HH----HHHHHHHHHhccCCCCccHHHHHHHHHHHHhhcc--cCCCceEEEEEcCCCCCcc----hhhhcccCCCce
Confidence 1 11 1223344555778899999999999988765431 1223468999999987654 334456677999
Q ss_pred EEEEecCC-CcchhhhhcccCC
Q 010107 441 ILIIGVGG-ADFKEMEILDADK 461 (518)
Q Consensus 441 iiiVGvG~-~~f~~m~~ld~d~ 461 (518)
|..||+|. .+...|++|-...
T Consensus 126 v~~igig~~~~~~~l~~iA~~t 147 (155)
T cd01466 126 IHTFGLGASHDPALLAFIAEIT 147 (155)
T ss_pred EEEEecCCCCCHHHHHHHHhcc
Confidence 99999994 6888898888443
No 220
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=98.25 E-value=2.6e-05 Score=71.85 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=98.9
Q ss_pred eeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEecCCCCCC
Q 010107 281 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSY 360 (518)
Q Consensus 281 ~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~ 360 (518)
+++++.+|.|+| |... .++.|..++..++..+..+..+-++.|+.... ..+++..
T Consensus 1 ~~~~~vlD~S~S------------M~~~----~~~~~k~a~~~~~~~l~~~~~v~li~f~~~~~-----~~~~~~~---- 55 (170)
T cd01465 1 LNLVFVIDRSGS------------MDGP----KLPLVKSALKLLVDQLRPDDRLAIVTYDGAAE-----TVLPATP---- 55 (170)
T ss_pred CcEEEEEECCCC------------CCCh----hHHHHHHHHHHHHHhCCCCCEEEEEEecCCcc-----EEecCcc----
Confidence 578999999997 5422 37778888888888887777899999998621 1122211
Q ss_pred CcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcCC----HHHHHHHHHHccC
Q 010107 361 CEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTD----LQETKDALVKASD 436 (518)
Q Consensus 361 ~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~d----~~~t~~~i~~as~ 436 (518)
. ...+.+ .+.+..++..|.|++...++.+.+..++.. .....-.++++|||.-++ .++..+++..+..
T Consensus 56 -~-~~~~~l----~~~l~~~~~~g~T~~~~al~~a~~~~~~~~--~~~~~~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~ 127 (170)
T cd01465 56 -V-RDKAAI----LAAIDRLTAGGSTAGGAGIQLGYQEAQKHF--VPGGVNRILLATDGDFNVGETDPDELARLVAQKRE 127 (170)
T ss_pred -c-chHHHH----HHHHHcCCCCCCCCHHHHHHHHHHHHHhhc--CCCCeeEEEEEeCCCCCCCCCCHHHHHHHHHHhhc
Confidence 0 111222 234445667899999999999988776542 112225578999998642 4556666666666
Q ss_pred CCeEEEEEecCCC-cchhhhhccc
Q 010107 437 LPLSILIIGVGGA-DFKEMEILDA 459 (518)
Q Consensus 437 lPlsiiiVGvG~~-~f~~m~~ld~ 459 (518)
..+-|..||+|.. +...|+.+-.
T Consensus 128 ~~v~i~~i~~g~~~~~~~l~~ia~ 151 (170)
T cd01465 128 SGITLSTLGFGDNYNEDLMEAIAD 151 (170)
T ss_pred CCeEEEEEEeCCCcCHHHHHHHHh
Confidence 7888999999964 7777877763
No 221
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.25 E-value=5.5e-06 Score=90.21 Aligned_cols=105 Identities=15% Similarity=0.159 Sum_probs=76.1
Q ss_pred eEEEEEeecCCCc------CCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEE
Q 010107 134 TTELILRCSDLDC------KDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIEC 206 (518)
Q Consensus 134 li~~~i~a~~L~~------~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV 206 (518)
+.+.+++|.+++. .+.+...||||++.+.+-... ....+|++..++.||.|++ |.|++.. ..-..|+|+|
T Consensus 471 L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D-~~~~kT~v~~n~~nP~Wneef~F~l~v--PELAllRf~V 547 (598)
T PLN02230 471 LKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVD-EVMEKTKIEYDTWTPIWNKEFIFPLAV--PELALLRVEV 547 (598)
T ss_pred EEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCC-CcccceeccCCCCCCccCCeeEEEEEc--CceeEEEEEE
Confidence 4445678887641 133455799999988752111 2346888989999999998 6665543 2357899999
Q ss_pred EeecCCCCCcceEEEEEechhhhhccCCCceEEeeccc
Q 010107 207 FNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLST 244 (518)
Q Consensus 207 ~D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~ 244 (518)
+|+|..++++|+|+..+++.+|+. | -+..+|.+.+
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~--G-yR~V~L~~~~ 582 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQ--G-IHAVPLFNRK 582 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhC--c-cceEeccCCC
Confidence 999998899999999999999975 2 3456666643
No 222
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=98.25 E-value=1.6e-05 Score=73.41 Aligned_cols=145 Identities=18% Similarity=0.256 Sum_probs=91.4
Q ss_pred eEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccc---cCCCCcceeeecccCCCCCceeEEecCCCC
Q 010107 282 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVY---DSDKRFPAWGFGARPIDGPVSHCFNLNGSN 358 (518)
Q Consensus 282 ~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~y---d~d~~~~~~gFG~~~~~~~~~~~f~l~~~~ 358 (518)
.+++.+|-|.| |.. ..++++...+-.++..+ .++-++.+..|+..+ .-.|+++. .
T Consensus 2 Dv~~vlD~S~S------------m~~----~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~-----~~~~~l~~-~ 59 (164)
T cd01482 2 DIVFLVDGSWS------------IGR----SNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDP-----RTEFDLNA-Y 59 (164)
T ss_pred CEEEEEeCCCC------------cCh----hhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCe-----eEEEecCC-C
Confidence 57899999987 442 23455555444445444 355789999999872 22366641 1
Q ss_pred CCCcccChHHHHHHHHhhhccce-ecCCCChHHHHHHHHHHHHhhh-cccCCceEEEEEEeCCCcCC-HHHHHHHHHHcc
Q 010107 359 SYCEVEGIPGIMMAYTSALHNVN-LAGPTLFGPVISNAALIAGQSL-ANHGQKYFVLLIITDGVVTD-LQETKDALVKAS 435 (518)
Q Consensus 359 ~~~~~~g~~~i~~~Y~~~~~~~~-~~gpt~f~pvi~~~~~~a~~~~-~~~~~~y~vlliltdG~i~d-~~~t~~~i~~as 435 (518)
...+.++++.. .+. ..|.|+....|..+.+...+.. .......-++++||||.-+| .++..+.+.
T Consensus 60 -----~~~~~l~~~l~----~~~~~~g~T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~~~~~~a~~lk--- 127 (164)
T cd01482 60 -----TSKEDVLAAIK----NLPYKGGNTRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQDDVELPARVLR--- 127 (164)
T ss_pred -----CCHHHHHHHHH----hCcCCCCCChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCchHHHHHHHHH---
Confidence 22344444433 233 4788999999988876543221 11234567889999998754 334444443
Q ss_pred CCCeEEEEEecCCCcchhhhhcccC
Q 010107 436 DLPLSILIIGVGGADFKEMEILDAD 460 (518)
Q Consensus 436 ~lPlsiiiVGvG~~~f~~m~~ld~d 460 (518)
...+.|+.||+|+.+-..|++|-+.
T Consensus 128 ~~gi~i~~ig~g~~~~~~L~~ia~~ 152 (164)
T cd01482 128 NLGVNVFAVGVKDADESELKMIASK 152 (164)
T ss_pred HCCCEEEEEecCcCCHHHHHHHhCC
Confidence 4688999999999887778888744
No 223
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.23 E-value=3.2e-06 Score=90.98 Aligned_cols=114 Identities=15% Similarity=0.165 Sum_probs=88.4
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCC
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 212 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~ 212 (518)
+-+-+.+|+||++.+..|.+||||.+.+-. ..++||.++.++|-|-|.| |.+.+. ..-+.|.|=|||.| .
T Consensus 7 l~vki~E~knL~~~~~~g~~D~yC~v~lD~-----E~v~RT~tv~ksL~PF~gEe~~~~iP---~~F~~l~fYv~D~d-~ 77 (800)
T KOG2059|consen 7 LKVKIGEAKNLPSYGPSGMRDCYCTVNLDQ-----EEVCRTATVEKSLCPFFGEEFYFEIP---RTFRYLSFYVWDRD-L 77 (800)
T ss_pred eeEEEeecccCCCCCCCCCcCcceEEeecc-----hhhhhhhhhhhhcCCccccceEEecC---cceeeEEEEEeccc-c
Confidence 334467899999999999999999998753 3699999999999999998 433321 12467999999999 8
Q ss_pred CCCcceEEEEEechhhhhccCCCceEEeecccccCCCCCccccceEEEE
Q 010107 213 GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 261 (518)
Q Consensus 213 ~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~~~~k~~~k~~~G~i~l~ 261 (518)
++++.||.+.+.-++|..-++...||.|..-... ..+.|.|.+.
T Consensus 78 ~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~d-----sEVQG~v~l~ 121 (800)
T KOG2059|consen 78 KRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPD-----SEVQGKVHLE 121 (800)
T ss_pred ccccccceeeeeHHHHhhCCCCccceeccccCCC-----hhhceeEEEE
Confidence 9999999999999999876666677777432211 1248888875
No 224
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.23 E-value=5.1e-07 Score=96.81 Aligned_cols=116 Identities=19% Similarity=0.331 Sum_probs=85.6
Q ss_pred EEeecCCCcCCCCCCCCcEEEEEEEecC----------------------Cce---eeEeeeccccCCCCCceee-eEEe
Q 010107 138 ILRCSDLDCKDLFSRNDPFLVISKIVES----------------------GTH---IPVCKTEVLKNETKPTWKS-VFLN 191 (518)
Q Consensus 138 ~i~a~~L~~~d~~g~sDPyv~i~~~~~~----------------------~~~---~~~~kTevik~tlnP~W~e-f~~~ 191 (518)
...|++|.++|.+|-||||+.....+.. +.. ..+.-|++.++|+||.|+| |.|.
T Consensus 120 ~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~EkF~F~ 199 (1103)
T KOG1328|consen 120 LLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSEKFQFT 199 (1103)
T ss_pred HHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhhheeee
Confidence 3679999999999999999988554210 011 1256789999999999999 7777
Q ss_pred eeccCCCCccEEEEEEeecCC---------------------------------CC---CcceEEEEEechhhhhccCCC
Q 010107 192 IQQVGSKDSPLIIECFNFNSN---------------------------------GK---HDLIGKVQKSLADLEKLHSSG 235 (518)
Q Consensus 192 ~~~l~~~~~~L~veV~D~d~~---------------------------------~~---~d~IG~~~i~l~~L~~~~~~~ 235 (518)
++... ...+.+.+||+|.. +. +||+|++.+++.++-. .|-.
T Consensus 200 IeDv~--tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~-~Gld 276 (1103)
T KOG1328|consen 200 IEDVQ--TDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPP-DGLD 276 (1103)
T ss_pred hhccc--cceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCc-chHH
Confidence 76552 56799999999742 22 7999999999999963 4556
Q ss_pred ceEEeecccccCCCCCccccceEEEE
Q 010107 236 QGQNLFLSTAAGNNNHKILNSQLFVD 261 (518)
Q Consensus 236 ~~~~l~n~~~~~k~~~k~~~G~i~l~ 261 (518)
.||.|.-.+.++| ++|.+++.
T Consensus 277 ~WFkLepRS~~S~-----VqG~~~Lk 297 (1103)
T KOG1328|consen 277 QWFKLEPRSDKSK-----VQGQVKLK 297 (1103)
T ss_pred HHhccCccccccc-----ccceEEEE
Confidence 7787754333222 48999985
No 225
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=98.22 E-value=2.5e-05 Score=72.72 Aligned_cols=142 Identities=16% Similarity=0.168 Sum_probs=89.9
Q ss_pred eEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccC-CCCcceeeecccCCCCCceeEEecCCCCCC
Q 010107 282 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDS-DKRFPAWGFGARPIDGPVSHCFNLNGSNSY 360 (518)
Q Consensus 282 ~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~-d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~ 360 (518)
.+++.+|.|+| |.. .+..+.|-.++..++..... +-.+-+|+|+...+.......++. .....
T Consensus 2 ~v~~llD~SgS------------M~~---~~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~~~~~~-~~~~~ 65 (174)
T cd01454 2 AVTLLLDLSGS------------MRS---DRRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERVRWIKI-KDFDE 65 (174)
T ss_pred EEEEEEECCCC------------CCC---CcHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccceEEEEe-cCccc
Confidence 57899999997 542 14555555555544444442 456999999876311111111221 01100
Q ss_pred CcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcCC----------HHHHHHH
Q 010107 361 CEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTD----------LQETKDA 430 (518)
Q Consensus 361 ~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~d----------~~~t~~~ 430 (518)
....+.++.+..+...|.|++++.|..+.+...+. ...--++++||||.-++ +++.+++
T Consensus 66 -------~~~~~~~~~l~~~~~~g~T~~~~al~~a~~~l~~~----~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~ 134 (174)
T cd01454 66 -------SLHERARKRLAALSPGGNTRDGAAIRHAAERLLAR----PEKRKILLVISDGEPNDLDYYEGNVFATEDALRA 134 (174)
T ss_pred -------ccchhHHHHHHccCCCCCCcHHHHHHHHHHHHhcC----CCcCcEEEEEeCCCcCcccccCcchhHHHHHHHH
Confidence 11122345556677788899999999998876643 23345789999998864 3455555
Q ss_pred HHHccCCCeEEEEEecCCCc
Q 010107 431 LVKASDLPLSILIIGVGGAD 450 (518)
Q Consensus 431 i~~as~lPlsiiiVGvG~~~ 450 (518)
+.+|.+..+.+..||||+..
T Consensus 135 ~~~~~~~gi~v~~igig~~~ 154 (174)
T cd01454 135 VIEARKLGIEVFGITIDRDA 154 (174)
T ss_pred HHHHHhCCcEEEEEEecCcc
Confidence 88888889999999999875
No 226
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=98.22 E-value=3.5e-06 Score=74.96 Aligned_cols=70 Identities=14% Similarity=0.190 Sum_probs=51.5
Q ss_pred EEEEeeeeeeCCC-CCceeeEEEEEEEeCcee-EEEEEEEEecCCcccccccccCccCcceeEEEEEeccccccccceeE
Q 010107 14 VEVGRTEVVLNSL-NPTWITKHIITYQFEVVQ-TLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSL 91 (518)
Q Consensus 14 ~ev~rTevi~~~l-NP~f~~~f~~~~~fe~~q-~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~~~~~~~ 91 (518)
..--||.++++|+ ||+|||+|.|++..+... .|.++|||.|. .+++|+||.+.+...+.. ..+..-
T Consensus 50 ~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~-----------~~~n~~IG~v~lG~~~~~-~~~~~h 117 (135)
T cd08692 50 LYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSS-----------VRRKHFLGQVWISSDSSS-SEAVEQ 117 (135)
T ss_pred ceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCC-----------CcCCceEEEEEECCccCC-chhhhh
Confidence 4568899999996 699999999998755433 67777888874 468999999999887642 222344
Q ss_pred EEec
Q 010107 92 TLDL 95 (518)
Q Consensus 92 ~~~L 95 (518)
|.+.
T Consensus 118 W~~m 121 (135)
T cd08692 118 WKDT 121 (135)
T ss_pred HHHH
Confidence 5443
No 227
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.16 E-value=6.4e-06 Score=73.21 Aligned_cols=62 Identities=21% Similarity=0.401 Sum_probs=52.5
Q ss_pred EEEEeeeeeeCCCC--CceeeEEEEEEEe---------------------Cce--eEEEEEEEEecCCcccccccccCcc
Q 010107 14 VEVGRTEVVLNSLN--PTWITKHIITYQF---------------------EVV--QTLVFRIYDVDTQFHNVDVKTLKLV 68 (518)
Q Consensus 14 ~ev~rTevi~~~lN--P~f~~~f~~~~~f---------------------e~~--q~L~~~VyD~D~~~~~~~~~~~~l~ 68 (518)
.+..+|.|.++++| |.||.+|.|++.. |.. ..|.++|||.|. ++
T Consensus 38 ~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~-----------~s 106 (133)
T cd08374 38 EDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDK-----------FS 106 (133)
T ss_pred ccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcc-----------cC
Confidence 45789999999999 9999999988765 333 389999999995 46
Q ss_pred CcceeEEEEEeccccccc
Q 010107 69 EQQFLGEATCTLSQIVTR 86 (518)
Q Consensus 69 ~~d~iG~~~~~L~~l~~~ 86 (518)
.+|+||+++++|..+...
T Consensus 107 ~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 107 PDDFLGSLELDLSILPRP 124 (133)
T ss_pred CCCcceEEEEEhhhcccc
Confidence 899999999999988654
No 228
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.12 E-value=1.6e-05 Score=86.53 Aligned_cols=105 Identities=16% Similarity=0.170 Sum_probs=74.5
Q ss_pred eEEEEEeecCCC----c--CCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEE
Q 010107 134 TTELILRCSDLD----C--KDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIEC 206 (518)
Q Consensus 134 li~~~i~a~~L~----~--~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV 206 (518)
+.+.+++|.+++ . .+.+...|||+++.+.+-... ....+|+++.++.||.|++ |.|.+.. ..-.-|+|+|
T Consensus 454 L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D-~~~~rTk~v~nn~nP~W~e~f~F~i~~--PeLAllRf~V 530 (581)
T PLN02222 454 LRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGD-TVMKKTKTLEDNWIPAWDEVFEFPLTV--PELALLRLEV 530 (581)
T ss_pred EEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCC-cceeeeEecCCCCCcccCCeeEEEEEc--CceeEEEEEE
Confidence 334467777642 2 123455799999988642111 2456899999999999998 6655442 2246899999
Q ss_pred EeecCCCCCcceEEEEEechhhhhccCCCceEEeeccc
Q 010107 207 FNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLST 244 (518)
Q Consensus 207 ~D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~ 244 (518)
||+|..+.++|||+..+++..|+. | -+..+|.+.+
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~--G-yR~V~L~~~~ 565 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQ--G-IRAFPLHSRK 565 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhC--c-cceEEccCCC
Confidence 999988889999999999999965 2 3456666643
No 229
>PLN02952 phosphoinositide phospholipase C
Probab=98.06 E-value=2.3e-05 Score=85.61 Aligned_cols=68 Identities=13% Similarity=0.260 Sum_probs=58.0
Q ss_pred EEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEeccccccccceeEEEec
Q 010107 16 VGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDL 95 (518)
Q Consensus 16 v~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~~~~~~~~~~L 95 (518)
..||+++.+|.||+|++.|.|.....+.--|+|+|||.|.. ++++|+|++.++|..|...- .+++|
T Consensus 514 ~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~-----------~~ddfiGq~~lPv~~Lr~Gy---R~VpL 579 (599)
T PLN02952 514 KKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMS-----------EKDDFGGQTCLPVSELRPGI---RSVPL 579 (599)
T ss_pred ceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEecCCC-----------CCCCeEEEEEcchhHhcCCc---eeEeC
Confidence 34899999999999999999998877777899999999953 57999999999999997542 37788
Q ss_pred cC
Q 010107 96 VR 97 (518)
Q Consensus 96 ~~ 97 (518)
.+
T Consensus 580 ~~ 581 (599)
T PLN02952 580 HD 581 (599)
T ss_pred cC
Confidence 65
No 230
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=98.05 E-value=6.5e-05 Score=83.66 Aligned_cols=148 Identities=15% Similarity=0.158 Sum_probs=101.3
Q ss_pred ceeeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEecCCCC
Q 010107 279 FELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSN 358 (518)
Q Consensus 279 ~~~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~ 358 (518)
...++++.||.|+| |.. +..++|-.++..++....++-.|-++.|+... ...|+..
T Consensus 270 ~p~~vvfvlD~SgS------------M~g----~~i~~ak~al~~~l~~L~~~d~~~ii~F~~~~-----~~~~~~~--- 325 (596)
T TIGR03788 270 LPRELVFVIDTSGS------------MAG----ESIEQAKSALLLALDQLRPGDRFNIIQFDSDV-----TLLFPVP--- 325 (596)
T ss_pred CCceEEEEEECCCC------------CCC----ccHHHHHHHHHHHHHhCCCCCEEEEEEECCcc-----eEecccc---
Confidence 34689999999997 542 34667777777778888777789999999862 1112211
Q ss_pred CCCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcCCHHHHHHHHHHccCCC
Q 010107 359 SYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLP 438 (518)
Q Consensus 359 ~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~lP 438 (518)
+..-++-++...+.+..++..|.|++.+.|+.+.+..... ....--.+++||||.+.|..+..+.+..+. -.
T Consensus 326 ----~~~~~~~~~~a~~~i~~l~a~GgT~l~~aL~~a~~~~~~~---~~~~~~~iillTDG~~~~~~~~~~~~~~~~-~~ 397 (596)
T TIGR03788 326 ----VPATAHNLARARQFVAGLQADGGTEMAGALSAALRDDGPE---SSGALRQVVFLTDGAVGNEDALFQLIRTKL-GD 397 (596)
T ss_pred ----ccCCHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHhhccc---CCCceeEEEEEeCCCCCCHHHHHHHHHHhc-CC
Confidence 0011222333445566777789999999999888763211 122334578899999999888888876553 24
Q ss_pred eEEEEEecCCC-cchhhhhcc
Q 010107 439 LSILIIGVGGA-DFKEMEILD 458 (518)
Q Consensus 439 lsiiiVGvG~~-~f~~m~~ld 458 (518)
.-|..||||++ |...|+.|-
T Consensus 398 ~ri~tvGiG~~~n~~lL~~lA 418 (596)
T TIGR03788 398 SRLFTVGIGSAPNSYFMRKAA 418 (596)
T ss_pred ceEEEEEeCCCcCHHHHHHHH
Confidence 56778899986 888888887
No 231
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=98.04 E-value=6.9e-05 Score=70.67 Aligned_cols=150 Identities=16% Similarity=0.189 Sum_probs=97.1
Q ss_pred ceeeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccccc---------CCCCcceeeecccCCCCCce
Q 010107 279 FELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYD---------SDKRFPAWGFGARPIDGPVS 349 (518)
Q Consensus 279 ~~~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd---------~d~~~~~~gFG~~~~~~~~~ 349 (518)
|.+.+++.+|-|+| |.. ..++.+...+-.++..+. .+-++-++.|+.. +.
T Consensus 1 c~~dvv~vlD~S~S------------m~~----~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~-----~~ 59 (186)
T cd01480 1 GPVDITFVLDSSES------------VGL----QNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQ-----QE 59 (186)
T ss_pred CCeeEEEEEeCCCc------------cch----hhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCC-----ce
Confidence 56789999999997 542 335555544444455542 2346788888865 23
Q ss_pred eEEecCCCCCCCcccChHHHHHHHHhhhccce-ecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcCCH--HH
Q 010107 350 HCFNLNGSNSYCEVEGIPGIMMAYTSALHNVN-LAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDL--QE 426 (518)
Q Consensus 350 ~~f~l~~~~~~~~~~g~~~i~~~Y~~~~~~~~-~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~--~~ 426 (518)
..|+++... ...+.+ .+.+..++ ..|.|+....|+.+.+..... .....--++++||||..++. ..
T Consensus 60 ~~~~l~~~~-----~~~~~l----~~~i~~l~~~gg~T~~~~AL~~a~~~l~~~--~~~~~~~~iillTDG~~~~~~~~~ 128 (186)
T cd01480 60 VEAGFLRDI-----RNYTSL----KEAVDNLEYIGGGTFTDCALKYATEQLLEG--SHQKENKFLLVITDGHSDGSPDGG 128 (186)
T ss_pred eeEeccccc-----CCHHHH----HHHHHhCccCCCCccHHHHHHHHHHHHhcc--CCCCCceEEEEEeCCCcCCCcchh
Confidence 356664321 122233 34444554 478999999999998876541 12345678899999986432 23
Q ss_pred HHHHHHHccCCCeEEEEEecCCCcchhhhhcccC
Q 010107 427 TKDALVKASDLPLSILIIGVGGADFKEMEILDAD 460 (518)
Q Consensus 427 t~~~i~~as~lPlsiiiVGvG~~~f~~m~~ld~d 460 (518)
..+++.++.+..+.|..||||..+-..|+++-+.
T Consensus 129 ~~~~~~~~~~~gi~i~~vgig~~~~~~L~~IA~~ 162 (186)
T cd01480 129 IEKAVNEADHLGIKIFFVAVGSQNEEPLSRIACD 162 (186)
T ss_pred HHHHHHHHHHCCCEEEEEecCccchHHHHHHHcC
Confidence 4455566668899999999999877777777744
No 232
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.02 E-value=2.5e-05 Score=85.43 Aligned_cols=105 Identities=16% Similarity=0.188 Sum_probs=74.6
Q ss_pred eEEEEEeecCCCcC-C---CCCCCCcEEEEEEEecCCceeeEeeecc-ccCCCCCceee-eEEeeeccCCCCccEEEEEE
Q 010107 134 TTELILRCSDLDCK-D---LFSRNDPFLVISKIVESGTHIPVCKTEV-LKNETKPTWKS-VFLNIQQVGSKDSPLIIECF 207 (518)
Q Consensus 134 li~~~i~a~~L~~~-d---~~g~sDPyv~i~~~~~~~~~~~~~kTev-ik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~ 207 (518)
+.+-+++|.+++.. + ....+||||.+..-+- ..-....+|++ ..++-||.|++ |.|++..- .-.-|+|+|+
T Consensus 618 L~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gv-p~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vP--ELAliRF~V~ 694 (746)
T KOG0169|consen 618 LKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGV-PADCAEQKTKVVKNNGFNPIWDEEFEFQLSVP--ELALIRFEVH 694 (746)
T ss_pred eEEEEEecCcccCCCCCCcccccCCCCEEEEEccc-ccchhhhhceeeccCCcCcccCCeEEEEEecc--ceeEEEEEEE
Confidence 44556788855432 2 2245789888775431 11134689995 45669999998 66665542 2467999999
Q ss_pred eecCCCCCcceEEEEEechhhhhccCCCceEEeeccc
Q 010107 208 NFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLST 244 (518)
Q Consensus 208 D~d~~~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~ 244 (518)
|+|..+++||+|+..+++.+|++ | -+..+|.+..
T Consensus 695 d~d~~~~ddF~GQ~tlP~~~L~~--G-yRhVpL~~~~ 728 (746)
T KOG0169|consen 695 DYDYIGKDDFIGQTTLPVSELRQ--G-YRHVPLLSRE 728 (746)
T ss_pred ecCCCCcccccceeeccHHHhhC--c-eeeeeecCCC
Confidence 99999999999999999999975 2 4567787754
No 233
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.99 E-value=8.2e-05 Score=71.29 Aligned_cols=166 Identities=22% Similarity=0.273 Sum_probs=99.1
Q ss_pred CceeeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCC-CceeEEecCC
Q 010107 278 GFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDG-PVSHCFNLNG 356 (518)
Q Consensus 278 g~~~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~d~~~~~~gFG~~~~~~-~~~~~f~l~~ 356 (518)
....++++.||.|+| +.+.+.. ..+..+.|..++..++..+.++.++-++.|+...... ...-.+|..
T Consensus 18 ~~~~~vv~vlD~SgS---------M~~~~~~-~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~~~~~~~~~~~p~~- 86 (206)
T cd01456 18 QLPPNVAIVLDNSGS---------MREVDGG-GETRLDNAKAALDETANALPDGTRLGLWTFSGDGDNPLDVRVLVPKG- 86 (206)
T ss_pred CCCCcEEEEEeCCCC---------CcCCCCC-cchHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCcccccccccc-
Confidence 345789999999996 3221111 2466777777777777778677789999999862111 110011100
Q ss_pred CCCCCcccChH-HHHHHHHhhhccce-ecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcCCH---HHHHHHH
Q 010107 357 SNSYCEVEGIP-GIMMAYTSALHNVN-LAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDL---QETKDAL 431 (518)
Q Consensus 357 ~~~~~~~~g~~-~i~~~Y~~~~~~~~-~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~---~~t~~~i 431 (518)
+.-..+.+.. .-.+...+.+..+. ..|.|++...|+.+.+... ...-..+++||||.-++- .+..+.+
T Consensus 87 -~~~~~~~~~~~~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~------~~~~~~iillTDG~~~~~~~~~~~~~~~ 159 (206)
T cd01456 87 -CLTAPVNGFPSAQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD------PGRVNVVVLITDGEDTCGPDPCEVAREL 159 (206)
T ss_pred -ccccccCCCCcccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC------CCCcceEEEEcCCCccCCCCHHHHHHHH
Confidence 0000111110 11233345566666 7899999999988876653 112267899999987653 2333333
Q ss_pred HHc--cCCCeEEEEEecCCC-cchhhhhcccCC
Q 010107 432 VKA--SDLPLSILIIGVGGA-DFKEMEILDADK 461 (518)
Q Consensus 432 ~~a--s~lPlsiiiVGvG~~-~f~~m~~ld~d~ 461 (518)
... ..-++.|..||+|.+ +...|+.+-...
T Consensus 160 ~~~~~~~~~i~i~~igiG~~~~~~~l~~iA~~t 192 (206)
T cd01456 160 AKRRTPAPPIKVNVIDFGGDADRAELEAIAEAT 192 (206)
T ss_pred HHhcCCCCCceEEEEEecCcccHHHHHHHHHhc
Confidence 332 124888999999975 677888887444
No 234
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=97.98 E-value=8.7e-05 Score=70.62 Aligned_cols=156 Identities=15% Similarity=0.230 Sum_probs=91.3
Q ss_pred eeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccc---ccCCCCcceeeecccCCCCCceeEEecCCC
Q 010107 281 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQV---YDSDKRFPAWGFGARPIDGPVSHCFNLNGS 357 (518)
Q Consensus 281 ~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~---yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~ 357 (518)
+++++.||.|.| |.+ ..++.+..++..++.. +..+-++-++.|+..+ ...|+++-
T Consensus 1 ~di~~vlD~SgS------------M~~----~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~-----~~~~~~~~- 58 (198)
T cd01470 1 LNIYIALDASDS------------IGE----EDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDP-----KEIVSIRD- 58 (198)
T ss_pred CcEEEEEECCCC------------ccH----HHHHHHHHHHHHHHHHccccCCCceEEEEEecCCc-----eEEEeccc-
Confidence 478999999997 543 3455555555555544 4335568999998761 12355531
Q ss_pred CCCCcccChHHHHHHHHhhhccc-eecCCCChHHHHHHHHHHHHhhhcc----cCCceEEEEEEeCCCcCC---HHHHHH
Q 010107 358 NSYCEVEGIPGIMMAYTSALHNV-NLAGPTLFGPVISNAALIAGQSLAN----HGQKYFVLLIITDGVVTD---LQETKD 429 (518)
Q Consensus 358 ~~~~~~~g~~~i~~~Y~~~~~~~-~~~gpt~f~pvi~~~~~~a~~~~~~----~~~~y~vlliltdG~i~d---~~~t~~ 429 (518)
+.-...+.++++-...-... ...|.|++...|+.+.+........ ....-.++++||||.-++ ..+..+
T Consensus 59 ---~~~~~~~~~~~~l~~~~~~~~~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~ 135 (198)
T cd01470 59 ---FNSNDADDVIKRLEDFNYDDHGDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMGGSPLPTVD 135 (198)
T ss_pred ---CCCCCHHHHHHHHHhCCcccccCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCCCChhHHHH
Confidence 11112233433222211111 1246799999998887653221100 012347889999998753 334444
Q ss_pred HHHHc----------cCCCeEEEEEecCCC-cchhhhhcccCC
Q 010107 430 ALVKA----------SDLPLSILIIGVGGA-DFKEMEILDADK 461 (518)
Q Consensus 430 ~i~~a----------s~lPlsiiiVGvG~~-~f~~m~~ld~d~ 461 (518)
.+.++ ...++.|..||||+. +.+.|++|-...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~v~i~~iGvG~~~~~~~L~~iA~~~ 178 (198)
T cd01470 136 KIKNLVYKNNKSDNPREDYLDVYVFGVGDDVNKEELNDLASKK 178 (198)
T ss_pred HHHHHHhcccccccchhcceeEEEEecCcccCHHHHHHHhcCC
Confidence 45443 234689999999974 888999988543
No 235
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=97.97 E-value=0.0001 Score=67.84 Aligned_cols=148 Identities=20% Similarity=0.262 Sum_probs=93.0
Q ss_pred eeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccccc---CCCCcceeeecccCCCCCceeEEecCCC
Q 010107 281 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYD---SDKRFPAWGFGARPIDGPVSHCFNLNGS 357 (518)
Q Consensus 281 ~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd---~d~~~~~~gFG~~~~~~~~~~~f~l~~~ 357 (518)
+++++.+|-|+| |.. ..++.+..++..++..++ .+-++-++-|+... .-.++++.
T Consensus 1 ~Dvv~vlD~SgS------------m~~----~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~-----~~~~~~~~- 58 (164)
T cd01472 1 ADIVFLVDGSES------------IGL----SNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDP-----RTEFYLNT- 58 (164)
T ss_pred CCEEEEEeCCCC------------CCH----HHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCce-----eEEEecCC-
Confidence 368899999997 542 345555555666666665 33468888888761 11244431
Q ss_pred CCCCcccChHHHHHHHHhhhcccee-cCCCChHHHHHHHHHHHHhhh-cccCCceEEEEEEeCCCcCCHHHHHHHHHHcc
Q 010107 358 NSYCEVEGIPGIMMAYTSALHNVNL-AGPTLFGPVISNAALIAGQSL-ANHGQKYFVLLIITDGVVTDLQETKDALVKAS 435 (518)
Q Consensus 358 ~~~~~~~g~~~i~~~Y~~~~~~~~~-~gpt~f~pvi~~~~~~a~~~~-~~~~~~y~vlliltdG~i~d~~~t~~~i~~as 435 (518)
. ...+.+. +.+..+.. .|.|+..+.+..|.+.-.... ......-.++++||||.-++ +...+..+..
T Consensus 59 ~-----~~~~~~~----~~l~~l~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~--~~~~~~~~l~ 127 (164)
T cd01472 59 Y-----RSKDDVL----EAVKNLRYIGGGTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQD--DVEEPAVELK 127 (164)
T ss_pred C-----CCHHHHH----HHHHhCcCCCCCchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCc--hHHHHHHHHH
Confidence 1 1122333 33444444 788999999999987654321 01223456778899997654 2233333444
Q ss_pred CCCeEEEEEecCCCcchhhhhcccCC
Q 010107 436 DLPLSILIIGVGGADFKEMEILDADK 461 (518)
Q Consensus 436 ~lPlsiiiVGvG~~~f~~m~~ld~d~ 461 (518)
...+.+..||+|+.+-..|+.+-+..
T Consensus 128 ~~gv~i~~ig~g~~~~~~L~~ia~~~ 153 (164)
T cd01472 128 QAGIEVFAVGVKNADEEELKQIASDP 153 (164)
T ss_pred HCCCEEEEEECCcCCHHHHHHHHCCC
Confidence 57889999999999999998888554
No 236
>PLN02270 phospholipase D alpha
Probab=97.96 E-value=7.7e-05 Score=83.24 Aligned_cols=87 Identities=16% Similarity=0.245 Sum_probs=70.9
Q ss_pred CCCCcEEEEEEEecCCceeeEeeeccccCC-CCCceee-eEEeeeccCCCCccEEEEEEeecCCCCCcceEEEEEechhh
Q 010107 151 SRNDPFLVISKIVESGTHIPVCKTEVLKNE-TKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADL 228 (518)
Q Consensus 151 g~sDPyv~i~~~~~~~~~~~~~kTevik~t-lnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L 228 (518)
+.||||+.+.+.. ..+.||.++.+. .||.|+| |.+++... -..+.|.|.|-|..|. .+||.+.++..+|
T Consensus 45 ~~~~~y~tv~~~~-----a~v~rtr~~~~~~~~p~w~e~f~i~~ah~---~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~ 115 (808)
T PLN02270 45 GESQLYATIDLEK-----ARVGRTRKIENEPKNPRWYESFHIYCAHM---ASNIIFTVKDDNPIGA-TLIGRAYIPVEEI 115 (808)
T ss_pred CCCCceEEEEeCC-----cEEEEEeecCCCCCCCccccceEEeeccC---cceEEEEEecCCccCc-eEEEEEEEEHHHh
Confidence 4689999999853 579999999885 6999999 77776543 5789999999888875 5999999999999
Q ss_pred hhccCCCceEEeeccccc
Q 010107 229 EKLHSSGQGQNLFLSTAA 246 (518)
Q Consensus 229 ~~~~~~~~~~~l~n~~~~ 246 (518)
........++++++..+|
T Consensus 116 ~~g~~i~~~~~~~~~~~~ 133 (808)
T PLN02270 116 LDGEEVDRWVEILDNDKN 133 (808)
T ss_pred cCCCccccEEeccCCCCC
Confidence 765445678999887643
No 237
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=97.95 E-value=0.00036 Score=66.24 Aligned_cols=154 Identities=14% Similarity=0.163 Sum_probs=98.8
Q ss_pred eEEEEeccccCCCCCCCCCCccccCCCCCCCHHH-HHHHHHhhhcccccCC---CCcceeeecccCCCCCceeEEecCCC
Q 010107 282 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQ-RAILEVGEVLQVYDSD---KRFPAWGFGARPIDGPVSHCFNLNGS 357 (518)
Q Consensus 282 ~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~-~ai~~i~~i~~~yd~d---~~~~~~gFG~~~~~~~~~~~f~l~~~ 357 (518)
.+++.+|-|.| +. ...++ .++..+-.++..++-. -++.+.-|+..+ ...|+++.+
T Consensus 2 Di~fllD~S~S------------i~----~~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~-----~~~~~~~~~ 60 (192)
T cd01473 2 DLTLILDESAS------------IG----YSNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKN-----RDVVPFSDE 60 (192)
T ss_pred cEEEEEeCCCc------------cc----HHHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCc-----eeEEecCcc
Confidence 47889999887 43 22344 3555666666666643 467788888762 223666432
Q ss_pred CCCCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcCCH--HHHHHHHHHcc
Q 010107 358 NSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDL--QETKDALVKAS 435 (518)
Q Consensus 358 ~~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~--~~t~~~i~~as 435 (518)
.-...+.++++-.+.-+....+|.|+....|+.+.+.............-|+++||||.-+|. ....++...+.
T Consensus 61 ----~~~~~~~l~~~i~~l~~~~~~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~~~~~~~~a~~lk 136 (192)
T cd01473 61 ----ERYDKNELLKKINDLKNSYRSGGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSASKKELQDISLLYK 136 (192)
T ss_pred ----cccCHHHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCcchhhHHHHHHHHH
Confidence 122234555544443333334688999999988877654321111224779999999998864 34566666777
Q ss_pred CCCeEEEEEecCCCcchhhhhcccC
Q 010107 436 DLPLSILIIGVGGADFKEMEILDAD 460 (518)
Q Consensus 436 ~lPlsiiiVGvG~~~f~~m~~ld~d 460 (518)
+..+.|..||||..+-..++.+-+.
T Consensus 137 ~~gV~i~~vGiG~~~~~el~~ia~~ 161 (192)
T cd01473 137 EENVKLLVVGVGAASENKLKLLAGC 161 (192)
T ss_pred HCCCEEEEEEeccccHHHHHHhcCC
Confidence 8899999999999876666666643
No 238
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=97.94 E-value=0.00026 Score=76.50 Aligned_cols=154 Identities=14% Similarity=0.169 Sum_probs=101.9
Q ss_pred eeeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCC-CCcce--eeecccCCCCCceeEEecCC
Q 010107 280 ELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSD-KRFPA--WGFGARPIDGPVSHCFNLNG 356 (518)
Q Consensus 280 ~~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~d-~~~~~--~gFG~~~~~~~~~~~f~l~~ 356 (518)
.+.+++.||-|+| |+ ..|-.++|...+..++..++.. ..+.+ ..|+.. ....|++..
T Consensus 42 ~lDIvFLLD~SgS------------Mg---~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~-----~r~vfpL~s 101 (576)
T PTZ00441 42 EVDLYLLVDGSGS------------IG---YHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNN-----TTELIRLGS 101 (576)
T ss_pred CceEEEEEeCCCc------------cC---CccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCC-----ceEEEecCC
Confidence 5899999999997 54 2355567777777777777542 12333 466554 333466643
Q ss_pred CCCCCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcCCHHHHHHHHHHccC
Q 010107 357 SNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASD 436 (518)
Q Consensus 357 ~~~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~ 436 (518)
.. -...+.++.+-.+....+..+|.|++...|..+.+...+.. .....--++++||||.-++..++.+++.....
T Consensus 102 ~~----s~Dk~~aL~~I~sL~~~~~pgGgTnig~AL~~Aae~L~sr~-~R~nvpKVVILLTDG~sns~~dvleaAq~LR~ 176 (576)
T PTZ00441 102 GA----SKDKEQALIIVKSLRKTYLPYGKTNMTDALLEVRKHLNDRV-NRENAIQLVILMTDGIPNSKYRALEESRKLKD 176 (576)
T ss_pred Cc----cccHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhhcc-cccCCceEEEEEecCCCCCcccHHHHHHHHHH
Confidence 21 12334566666666666677899999999998877654321 11233468899999997666667666666667
Q ss_pred CCeEEEEEecCCC-cchhhhhcc
Q 010107 437 LPLSILIIGVGGA-DFKEMEILD 458 (518)
Q Consensus 437 lPlsiiiVGvG~~-~f~~m~~ld 458 (518)
..+-|..||||.+ +=..|+.|-
T Consensus 177 ~GVeI~vIGVG~g~n~e~LrlIA 199 (576)
T PTZ00441 177 RNVKLAVIGIGQGINHQFNRLLA 199 (576)
T ss_pred CCCEEEEEEeCCCcCHHHHHHHh
Confidence 7999999999984 544455554
No 239
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=97.92 E-value=0.00013 Score=66.96 Aligned_cols=146 Identities=17% Similarity=0.253 Sum_probs=91.6
Q ss_pred eeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccC---CCCcceeeecccCCCCCceeEEecCCC
Q 010107 281 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDS---DKRFPAWGFGARPIDGPVSHCFNLNGS 357 (518)
Q Consensus 281 ~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~---d~~~~~~gFG~~~~~~~~~~~f~l~~~ 357 (518)
+++++.+|.|.| |. ..|+++...+..++..+.. .-++.+.+|+..+ ... -.|+++..
T Consensus 1 ldv~~llD~S~S------------m~-----~~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~-~~~--~~~~l~~~ 60 (163)
T cd01476 1 LDLLFVLDSSGS------------VR-----GKFEKYKKYIERIVEGLEIGPTATRVALITYSGRG-RQR--VRFNLPKH 60 (163)
T ss_pred CCEEEEEeCCcc------------hh-----hhHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCC-ceE--EEecCCCC
Confidence 468899999997 43 1366666666676777654 5668899998851 111 13555321
Q ss_pred CCCCcccChHHHHHHHHhhhccce-ecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcC-CHHHHHHHHHHcc
Q 010107 358 NSYCEVEGIPGIMMAYTSALHNVN-LAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVT-DLQETKDALVKAS 435 (518)
Q Consensus 358 ~~~~~~~g~~~i~~~Y~~~~~~~~-~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~-d~~~t~~~i~~as 435 (518)
...+.++++ +..+. ..|.|+....|+.+.+...+..........+++++|||..+ +..+..+.+.+
T Consensus 61 ------~~~~~l~~~----i~~l~~~gg~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~~~~~~~l~~-- 128 (163)
T cd01476 61 ------NDGEELLEK----VDNLRFIGGTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHDDPEKQARILRA-- 128 (163)
T ss_pred ------CCHHHHHHH----HHhCccCCCCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCCchHHHHHHHhh--
Confidence 112333333 23333 36789999999999887642211122334889999999875 44455555554
Q ss_pred CCCeEEEEEecCCC---cchhhhhcc
Q 010107 436 DLPLSILIIGVGGA---DFKEMEILD 458 (518)
Q Consensus 436 ~lPlsiiiVGvG~~---~f~~m~~ld 458 (518)
..-+.++-||+|+. +...|..+.
T Consensus 129 ~~~v~v~~vg~g~~~~~~~~~L~~ia 154 (163)
T cd01476 129 VPNIETFAVGTGDPGTVDTEELHSIT 154 (163)
T ss_pred cCCCEEEEEECCCccccCHHHHHHHh
Confidence 46688999999986 555665554
No 240
>PLN02223 phosphoinositide phospholipase C
Probab=97.92 E-value=6.1e-05 Score=80.78 Aligned_cols=67 Identities=19% Similarity=0.391 Sum_probs=56.4
Q ss_pred EeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEeccccccccceeEEEecc
Q 010107 17 GRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLV 96 (518)
Q Consensus 17 ~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~~~~~~~~~~L~ 96 (518)
.||.|..|+.||+|++.|.|.+...+.--|+|+|||.|.. .+++|+|+..+++..|... -...+|.
T Consensus 453 ~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D~D~~-----------~~ddfiGQ~~LPv~~Lr~G---yR~VpL~ 518 (537)
T PLN02223 453 MKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYDYEVS-----------TADAFCGQTCLPVSELIEG---IRAVPLY 518 (537)
T ss_pred eEEEeCCCCcCceecceeEEEEEccCceEEEEEEEecCCC-----------CCCcEEEEEecchHHhcCC---ceeEecc
Confidence 4788888999999999999999888888999999999953 5799999999999998643 2345775
Q ss_pred C
Q 010107 97 R 97 (518)
Q Consensus 97 ~ 97 (518)
+
T Consensus 519 ~ 519 (537)
T PLN02223 519 D 519 (537)
T ss_pred C
Confidence 5
No 241
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=97.92 E-value=0.00019 Score=65.51 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=96.1
Q ss_pred eEEEEeccccCCCCCCCCCCccccCCC-CCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEecCCCCCC
Q 010107 282 NFMVAVDFTASNGNPRLPDSLHYLDPS-GRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSY 360 (518)
Q Consensus 282 ~~~~~iDft~sN~~~~~~~slH~~~~~-~~~n~y~~ai~~i~~i~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~ 360 (518)
++++.+|-|+| |... ...+...+|..++..++..+..+ ++.++.|+..+ ...++++
T Consensus 1 dvv~v~D~SgS------------M~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~l~~f~~~~-----~~~~~~t----- 57 (172)
T PF13519_consen 1 DVVFVLDNSGS------------MNGYDGNRTRIDQAKDALNELLANLPGD-RVGLVSFSDSS-----RTLSPLT----- 57 (172)
T ss_dssp EEEEEEE-SGG------------GGTTTSSS-HHHHHHHHHHHHHHHHTTS-EEEEEEESTSC-----EEEEEEE-----
T ss_pred CEEEEEECCcc------------cCCCCCCCcHHHHHHHHHHHHHHHCCCC-EEEEEEecccc-----ccccccc-----
Confidence 57899999996 3322 12578999999999999988655 89999999862 1134432
Q ss_pred CcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcCCHHHHHHHHHHccCCCeE
Q 010107 361 CEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLPLS 440 (518)
Q Consensus 361 ~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~lPls 440 (518)
...+.+.++..+.-......|.|++...|..+.+..... ...--.+++||||.-+ ....+++..+....+.
T Consensus 58 ---~~~~~~~~~l~~~~~~~~~~~~t~~~~al~~a~~~~~~~----~~~~~~iv~iTDG~~~--~~~~~~~~~~~~~~i~ 128 (172)
T PF13519_consen 58 ---SDKDELKNALNKLSPQGMPGGGTNLYDALQEAAKMLASS----DNRRRAIVLITDGEDN--SSDIEAAKALKQQGIT 128 (172)
T ss_dssp ---SSHHHHHHHHHTHHHHG--SSS--HHHHHHHHHHHHHC-----SSEEEEEEEEES-TTH--CHHHHHHHHHHCTTEE
T ss_pred ---ccHHHHHHHhhcccccccCccCCcHHHHHHHHHHHHHhC----CCCceEEEEecCCCCC--cchhHHHHHHHHcCCe
Confidence 345566666555555556688999999999998877643 1345566889999654 4444566677788999
Q ss_pred EEEEecCCCcc--hhhhhcc
Q 010107 441 ILIIGVGGADF--KEMEILD 458 (518)
Q Consensus 441 iiiVGvG~~~f--~~m~~ld 458 (518)
|.+||+|...- ..|+.|-
T Consensus 129 i~~v~~~~~~~~~~~l~~la 148 (172)
T PF13519_consen 129 IYTVGIGSDSDANEFLQRLA 148 (172)
T ss_dssp EEEEEES-TT-EHHHHHHHH
T ss_pred EEEEEECCCccHHHHHHHHH
Confidence 99999998654 4666665
No 242
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=97.88 E-value=7.9e-05 Score=62.85 Aligned_cols=82 Identities=13% Similarity=0.236 Sum_probs=64.7
Q ss_pred EEEEeecCCCcCC---CCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecC
Q 010107 136 ELILRCSDLDCKD---LFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 211 (518)
Q Consensus 136 ~~~i~a~~L~~~d---~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~ 211 (518)
+.+.+++++...+ +++++|||+.+...+ ..++||++ +.||.|++ |.|+++ ....+.+.|||...
T Consensus 3 I~V~~~RdvdH~~~~~~~~~~etyV~IKved-----~~kaRTr~---srnd~WnE~F~i~Vd----k~nEiel~VyDk~~ 70 (109)
T cd08689 3 ITITSARDVDHIASPRFSKRPETYVSIKVED-----VERARTKP---SRNDRWNEDFEIPVE----KNNEEEVIVYDKGG 70 (109)
T ss_pred EEEEEEecCccccchhhccCCCcEEEEEECC-----EEEEeccC---CCCCcccceEEEEec----CCcEEEEEEEeCCC
Confidence 3457889998877 678899999998752 34788877 48999998 777774 36789999999754
Q ss_pred CCCCcceEEEEEechhhhh
Q 010107 212 NGKHDLIGKVQKSLADLEK 230 (518)
Q Consensus 212 ~~~~d~IG~~~i~l~~L~~ 230 (518)
...-.||..-+.+++|..
T Consensus 71 -~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 71 -DQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred -CeecceeeehhhHHHHHH
Confidence 345689999999999965
No 243
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=97.82 E-value=0.00029 Score=66.24 Aligned_cols=149 Identities=15% Similarity=0.183 Sum_probs=92.2
Q ss_pred eeeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccccc-CCCCcceeeecccCCCCCceeEEecCCCC
Q 010107 280 ELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYD-SDKRFPAWGFGARPIDGPVSHCFNLNGSN 358 (518)
Q Consensus 280 ~~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd-~d~~~~~~gFG~~~~~~~~~~~f~l~~~~ 358 (518)
.+++++.||-|+| |.. .+.+++..+-.++..|+ ++-++-++.|+.. ..-.|+|+...
T Consensus 4 ~~Dvv~llD~SgS------------m~~-----~~~~~~~~~~~l~~~~~~~~~rvglv~Fs~~-----~~~~~~l~~~~ 61 (185)
T cd01474 4 HFDLYFVLDKSGS------------VAA-----NWIEIYDFVEQLVDRFNSPGLRFSFITFSTR-----ATKILPLTDDS 61 (185)
T ss_pred ceeEEEEEeCcCc------------hhh-----hHHHHHHHHHHHHHHcCCCCcEEEEEEecCC-----ceEEEeccccH
Confidence 3789999999997 542 12333344444444443 3467889999876 22246664321
Q ss_pred CCCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhh-cccCCceEEEEEEeCCCcCC--HHHHHHHHHHcc
Q 010107 359 SYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSL-ANHGQKYFVLLIITDGVVTD--LQETKDALVKAS 435 (518)
Q Consensus 359 ~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~-~~~~~~y~vlliltdG~i~d--~~~t~~~i~~as 435 (518)
+.+.++. +.+..+...|.|+....|+.|.+...... ...... .++++||||.-+| ...+.++...+.
T Consensus 62 --------~~~~~~l-~~l~~~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~-~~villTDG~~~~~~~~~~~~~a~~l~ 131 (185)
T cd01474 62 --------SAIIKGL-EVLKKVTPSGQTYIHEGLENANEQIFNRNGGGRETV-SVIIALTDGQLLLNGHKYPEHEAKLSR 131 (185)
T ss_pred --------HHHHHHH-HHHhccCCCCCCcHHHHHHHHHHHHHhhccCCCCCC-eEEEEEcCCCcCCCCCcchHHHHHHHH
Confidence 1222222 12455556799999999999887553211 111122 6789999999843 334555555555
Q ss_pred CCCeEEEEEecCCCcchhhhhcccC
Q 010107 436 DLPLSILIIGVGGADFKEMEILDAD 460 (518)
Q Consensus 436 ~lPlsiiiVGvG~~~f~~m~~ld~d 460 (518)
+..+.|.-||||+.+...|+.+-++
T Consensus 132 ~~gv~i~~vgv~~~~~~~L~~iA~~ 156 (185)
T cd01474 132 KLGAIVYCVGVTDFLKSQLINIADS 156 (185)
T ss_pred HcCCEEEEEeechhhHHHHHHHhCC
Confidence 6778899999988888888877743
No 244
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=97.80 E-value=3.8e-05 Score=80.80 Aligned_cols=88 Identities=25% Similarity=0.368 Sum_probs=72.2
Q ss_pred EEEEeecCCCcCCCC-CCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee--eEEeeeccCCCCccEEEEEEeecCC
Q 010107 136 ELILRCSDLDCKDLF-SRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS--VFLNIQQVGSKDSPLIIECFNFNSN 212 (518)
Q Consensus 136 ~~~i~a~~L~~~d~~-g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e--f~~~~~~l~~~~~~L~veV~D~d~~ 212 (518)
+-+..|++|+-||.. ...|.|+++.+.+ ..+||.+-.+++||+||. |.|.+..-.-.+.+|.+.+.|+|..
T Consensus 7 vki~a~r~lpvmdkasd~tdafveik~~n------~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 7 VKIKAARHLPVMDKASDLTDAFVEIKFAN------TTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred eEEEeccCCcccccccccchheeEEEecc------cceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 335678999999844 4579999998864 379999999999999997 6666544322378999999999999
Q ss_pred CCCcceEEEEEechhhh
Q 010107 213 GKHDLIGKVQKSLADLE 229 (518)
Q Consensus 213 ~~~d~IG~~~i~l~~L~ 229 (518)
+.+|-||.+.++++-|.
T Consensus 81 sandaigkv~i~idpl~ 97 (1169)
T KOG1031|consen 81 SANDAIGKVNIDIDPLC 97 (1169)
T ss_pred ccccccceeeeccChHH
Confidence 99999999999998875
No 245
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=97.79 E-value=0.00062 Score=64.70 Aligned_cols=155 Identities=8% Similarity=0.149 Sum_probs=103.0
Q ss_pred cCceeeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccC---------CCCcceeeecccCCCCC
Q 010107 277 GGFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDS---------DKRFPAWGFGARPIDGP 347 (518)
Q Consensus 277 ~g~~~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~---------d~~~~~~gFG~~~~~~~ 347 (518)
....+.++++||-|.| |.+ +.++++...+..++..++- ..++-+.-|+..
T Consensus 16 ~~~~~DivfvlD~S~S------------m~~----~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~----- 74 (193)
T cd01477 16 KNLWLDIVFVVDNSKG------------MTQ----GGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSN----- 74 (193)
T ss_pred ccceeeEEEEEeCCCC------------cch----hhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCc-----
Confidence 4567899999999998 552 3588887777777776654 146767777665
Q ss_pred ceeEEecCCCCCCCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhh-hcccCCceEEEEEEeCCCcCCH-H
Q 010107 348 VSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQS-LANHGQKYFVLLIITDGVVTDL-Q 425 (518)
Q Consensus 348 ~~~~f~l~~~~~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~-~~~~~~~y~vlliltdG~i~d~-~ 425 (518)
..-.|+|+ + ....++++++....+..+...|.|+...-|..|.+.-... ....+...-++++||||.-++. .
T Consensus 75 a~~~~~L~-d-----~~~~~~~~~ai~~~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~~~ 148 (193)
T cd01477 75 ATVVADLN-D-----LQSFDDLYSQIQGSLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEGSN 148 (193)
T ss_pred eEEEEecc-c-----ccCHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCCCC
Confidence 22357874 2 2346778887777666666667899999998887765532 1112345788999999754322 2
Q ss_pred HHHHHHHHccCCCeEEEEEecCCC-cchhhhhcc
Q 010107 426 ETKDALVKASDLPLSILIIGVGGA-DFKEMEILD 458 (518)
Q Consensus 426 ~t~~~i~~as~lPlsiiiVGvG~~-~f~~m~~ld 458 (518)
...++..++....+.|.-||||+. |=..|++|.
T Consensus 149 ~~~~~a~~l~~~GI~i~tVGiG~~~d~~~~~~L~ 182 (193)
T cd01477 149 DPRPIAARLKSTGIAIITVAFTQDESSNLLDKLG 182 (193)
T ss_pred CHHHHHHHHHHCCCEEEEEEeCCCCCHHHHHHHH
Confidence 233444445577999999999985 323355554
No 246
>PLN02222 phosphoinositide phospholipase C 2
Probab=97.79 E-value=6.2e-05 Score=82.01 Aligned_cols=68 Identities=12% Similarity=0.201 Sum_probs=57.3
Q ss_pred EEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEeccccccccceeEEEec
Q 010107 16 VGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDL 95 (518)
Q Consensus 16 v~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~~~~~~~~~~L 95 (518)
..||+++.+|.||+|++.|.|.....+.--|||+|||.|.. ..++|+|+..+++..|... - ...+|
T Consensus 496 ~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~-----------~~ddfigq~~lPv~~Lr~G--y-R~V~L 561 (581)
T PLN02222 496 MKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMS-----------EKDDFGGQTCLPVWELSQG--I-RAFPL 561 (581)
T ss_pred eeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCC-----------CCCcEEEEEEcchhhhhCc--c-ceEEc
Confidence 34899999999999999999998888888999999999853 4799999999999998643 2 24577
Q ss_pred cC
Q 010107 96 VR 97 (518)
Q Consensus 96 ~~ 97 (518)
.+
T Consensus 562 ~~ 563 (581)
T PLN02222 562 HS 563 (581)
T ss_pred cC
Confidence 55
No 247
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=97.75 E-value=0.00043 Score=62.97 Aligned_cols=143 Identities=17% Similarity=0.199 Sum_probs=92.0
Q ss_pred eEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEecCCCCCCC
Q 010107 282 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYC 361 (518)
Q Consensus 282 ~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~~ 361 (518)
++++-||.|+| |... . +.+..++-.+++...+...|-++.||..+. .+++- ....
T Consensus 2 ~vvilvD~S~S------------m~g~-~----~~~k~al~~~l~~L~~~d~fnii~f~~~~~-----~~~~~---~~~~ 56 (155)
T PF13768_consen 2 DVVILVDTSGS------------MSGE-K----ELVKDALRAILRSLPPGDRFNIIAFGSSVR-----PLFPG---LVPA 56 (155)
T ss_pred eEEEEEeCCCC------------CCCc-H----HHHHHHHHHHHHhCCCCCEEEEEEeCCEee-----Ecchh---HHHH
Confidence 58999999997 5433 2 444444444556666666899999998621 11210 0001
Q ss_pred cccChHHHHHHHHhhhcccee-cCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCc-CCHHHHHHHHHHccCCCe
Q 010107 362 EVEGIPGIMMAYTSALHNVNL-AGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVV-TDLQETKDALVKASDLPL 439 (518)
Q Consensus 362 ~~~g~~~i~~~Y~~~~~~~~~-~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i-~d~~~t~~~i~~as~lPl 439 (518)
...++ +.-.+.+..++. .|.|++.+.++.|.+.-. ....-..+++||||.. ...+++.+.+..+. -.+
T Consensus 57 ~~~~~----~~a~~~I~~~~~~~G~t~l~~aL~~a~~~~~-----~~~~~~~IilltDG~~~~~~~~i~~~v~~~~-~~~ 126 (155)
T PF13768_consen 57 TEENR----QEALQWIKSLEANSGGTDLLAALRAALALLQ-----RPGCVRAIILLTDGQPVSGEEEILDLVRRAR-GHI 126 (155)
T ss_pred hHHHH----HHHHHHHHHhcccCCCccHHHHHHHHHHhcc-----cCCCccEEEEEEeccCCCCHHHHHHHHHhcC-CCc
Confidence 11222 223344555777 899999999998876431 2345667789999996 55567777776544 567
Q ss_pred EEEEEecCC-Ccchhhhhccc
Q 010107 440 SILIIGVGG-ADFKEMEILDA 459 (518)
Q Consensus 440 siiiVGvG~-~~f~~m~~ld~ 459 (518)
-|.-+|+|. .+-..|++|-.
T Consensus 127 ~i~~~~~g~~~~~~~L~~LA~ 147 (155)
T PF13768_consen 127 RIFTFGIGSDADADFLRELAR 147 (155)
T ss_pred eEEEEEECChhHHHHHHHHHH
Confidence 888899998 57888888873
No 248
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=97.73 E-value=0.00029 Score=65.87 Aligned_cols=148 Identities=21% Similarity=0.225 Sum_probs=97.1
Q ss_pred eeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccC---CCCcceeeecccCCCCCceeEEecCCC
Q 010107 281 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDS---DKRFPAWGFGARPIDGPVSHCFNLNGS 357 (518)
Q Consensus 281 ~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~---d~~~~~~gFG~~~~~~~~~~~f~l~~~ 357 (518)
+.+++.+|-|+| +. +..|+++...+..++..++. .-++-+..|+.. +.-.|+|+.
T Consensus 1 ~Di~fvlD~S~S------------~~----~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~-----~~~~~~l~~- 58 (177)
T cd01469 1 MDIVFVLDGSGS------------IY----PDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSES-----FRTEFTLNE- 58 (177)
T ss_pred CcEEEEEeCCCC------------CC----HHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCc-----eeEEEecCc-
Confidence 468899999887 44 35688888888888888876 347888888876 223477652
Q ss_pred CCCCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHh-hhcccCCceEEEEEEeCCCcCCHHHHHHHHHHccC
Q 010107 358 NSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQ-SLANHGQKYFVLLIITDGVVTDLQETKDALVKASD 436 (518)
Q Consensus 358 ~~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~-~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~ 436 (518)
.. ..+.++++-.+ ++ ...|.|+....|+.|.+..-. ........--++++||||.-+|-..+.+++..|-.
T Consensus 59 ~~-----~~~~~~~~i~~-~~--~~~g~T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~~~~~~~~~~k~ 130 (177)
T cd01469 59 YR-----TKEEPLSLVKH-IS--QLLGLTNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDPLLKDVIPQAER 130 (177)
T ss_pred cC-----CHHHHHHHHHh-Cc--cCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCccccHHHHHHHHH
Confidence 22 22344443322 22 246789999999888775421 11112345678899999998876655555656667
Q ss_pred CCeEEEEEecCCCc-----chhhhhcc
Q 010107 437 LPLSILIIGVGGAD-----FKEMEILD 458 (518)
Q Consensus 437 lPlsiiiVGvG~~~-----f~~m~~ld 458 (518)
..+.|.-||||+.. .+.|+.+-
T Consensus 131 ~gv~v~~Vgvg~~~~~~~~~~~L~~ia 157 (177)
T cd01469 131 EGIIRYAIGVGGHFQRENSREELKTIA 157 (177)
T ss_pred CCcEEEEEEecccccccccHHHHHHHh
Confidence 88999999999852 34455554
No 249
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=97.72 E-value=0.0006 Score=64.24 Aligned_cols=154 Identities=12% Similarity=0.129 Sum_probs=98.9
Q ss_pred CceeeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccc---cCCCCcceeeecccCCCCCceeEEec
Q 010107 278 GFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVY---DSDKRFPAWGFGARPIDGPVSHCFNL 354 (518)
Q Consensus 278 g~~~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~y---d~d~~~~~~gFG~~~~~~~~~~~f~l 354 (518)
|.-.++++++|.|.| +.-.+ ..++..++|-.++...+..+ .+..++-++.|++..+ .-.-||
T Consensus 1 ~~~r~ivi~lD~S~S---------M~a~D--~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a----~~~~Pl 65 (183)
T cd01453 1 GIMRHLIIVIDCSRS---------MEEQD--LKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRA----EKLTDL 65 (183)
T ss_pred CceeEEEEEEECcHH---------HhcCC--CCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCcc----EEEECC
Confidence 445689999999995 33222 24799999999999999876 3446788999954311 112456
Q ss_pred CCCCCCCcccChHHHHHHHHhhhccc-eecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcCCHHHHHHHHHH
Q 010107 355 NGSNSYCEVEGIPGIMMAYTSALHNV-NLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVK 433 (518)
Q Consensus 355 ~~~~~~~~~~g~~~i~~~Y~~~~~~~-~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~ 433 (518)
+.|. + .+...+..+ ...|-|++...|..|.+.-+... ....=.+++++|||.-.|..+..+++..
T Consensus 66 T~D~--------~----~~~~~L~~~~~~~G~t~l~~aL~~A~~~l~~~~--~~~~~~iiil~sd~~~~~~~~~~~~~~~ 131 (183)
T cd01453 66 TGNP--------R----KHIQALKTARECSGEPSLQNGLEMALESLKHMP--SHGSREVLIIFSSLSTCDPGNIYETIDK 131 (183)
T ss_pred CCCH--------H----HHHHHhhcccCCCCchhHHHHHHHHHHHHhcCC--ccCceEEEEEEcCCCcCChhhHHHHHHH
Confidence 5542 1 233344333 45677999999998877665321 1123348888999887655444444555
Q ss_pred ccCCCeEEEEEecCCCcchhhhhcccCC
Q 010107 434 ASDLPLSILIIGVGGADFKEMEILDADK 461 (518)
Q Consensus 434 as~lPlsiiiVGvG~~~f~~m~~ld~d~ 461 (518)
+.+..+-|-+||+|.+ ...|+++-...
T Consensus 132 l~~~~I~v~~IgiG~~-~~~L~~ia~~t 158 (183)
T cd01453 132 LKKENIRVSVIGLSAE-MHICKEICKAT 158 (183)
T ss_pred HHHcCcEEEEEEechH-HHHHHHHHHHh
Confidence 5566788888999864 34566666443
No 250
>PLN02230 phosphoinositide phospholipase C 4
Probab=97.70 E-value=7.3e-05 Score=81.58 Aligned_cols=67 Identities=16% Similarity=0.304 Sum_probs=57.1
Q ss_pred EeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEeccccccccceeEEEecc
Q 010107 17 GRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLV 96 (518)
Q Consensus 17 ~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~~~~~~~~~~L~ 96 (518)
.||+|+.|+.||+|++.|.|.....+.--|||+|+|.|.. .++||+|+..+++..|-.. - ...+|.
T Consensus 514 ~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~-----------~~ddfiGQ~~lPv~~Lr~G--y-R~V~L~ 579 (598)
T PLN02230 514 EKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHDIN-----------EKDDFGGQTCLPVSEIRQG--I-HAVPLF 579 (598)
T ss_pred cceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEECCCC-----------CCCCEEEEEEcchHHhhCc--c-ceEecc
Confidence 4899999999999999999999888889999999999953 5799999999999998643 2 245775
Q ss_pred C
Q 010107 97 R 97 (518)
Q Consensus 97 ~ 97 (518)
+
T Consensus 580 ~ 580 (598)
T PLN02230 580 N 580 (598)
T ss_pred C
Confidence 5
No 251
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.67 E-value=0.00091 Score=62.24 Aligned_cols=152 Identities=18% Similarity=0.147 Sum_probs=87.7
Q ss_pred eeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEecCCCCCC
Q 010107 281 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSY 360 (518)
Q Consensus 281 ~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~ 360 (518)
+++++++|.|.|=.... .. ..+..+.|...+...+...+ +.++-++.|+.... ..+++.
T Consensus 3 ~~vv~vlD~S~SM~~~~---------~~-~~~r~~~a~~~~~~~~~~~~-~~~v~lv~f~~~~~-----~~~~~~----- 61 (180)
T cd01467 3 RDIMIALDVSGSMLAQD---------FV-KPSRLEAAKEVLSDFIDRRE-NDRIGLVVFAGAAF-----TQAPLT----- 61 (180)
T ss_pred ceEEEEEECCccccccc---------CC-CCCHHHHHHHHHHHHHHhCC-CCeEEEEEEcCCee-----eccCCC-----
Confidence 67899999999722111 00 12444555555556665554 44699999987621 012221
Q ss_pred CcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcCCHH-HHHHHHHHccCCCe
Q 010107 361 CEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQ-ETKDALVKASDLPL 439 (518)
Q Consensus 361 ~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~-~t~~~i~~as~lPl 439 (518)
.+...+.+ .-..+......|+|+...-|..+.+..... ...-.++++||||.-++-. ...++...+....+
T Consensus 62 ---~~~~~~~~-~l~~l~~~~~~g~T~l~~al~~a~~~l~~~----~~~~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi 133 (180)
T cd01467 62 ---LDRESLKE-LLEDIKIGLAGQGTAIGDAIGLAIKRLKNS----EAKERVIVLLTDGENNAGEIDPATAAELAKNKGV 133 (180)
T ss_pred ---ccHHHHHH-HHHHhhhcccCCCCcHHHHHHHHHHHHHhc----CCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHCCC
Confidence 11122222 222222334578899988888887765532 1334788999999764321 12222333445678
Q ss_pred EEEEEecCC------------CcchhhhhcccCC
Q 010107 440 SILIIGVGG------------ADFKEMEILDADK 461 (518)
Q Consensus 440 siiiVGvG~------------~~f~~m~~ld~d~ 461 (518)
.|..||+|. .+.+.|+.|-...
T Consensus 134 ~i~~i~ig~~~~~~~~~~~~~~~~~~l~~la~~t 167 (180)
T cd01467 134 RIYTIGVGKSGSGPKPDGSTILDEDSLVEIADKT 167 (180)
T ss_pred EEEEEEecCCCCCcCCCCcccCCHHHHHHHHHhc
Confidence 888888887 4677788777443
No 252
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=97.64 E-value=0.0014 Score=61.22 Aligned_cols=145 Identities=17% Similarity=0.162 Sum_probs=91.7
Q ss_pred EEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcc-cccCCCCcceeeecccCCCCCceeEEecCCCCCCC
Q 010107 283 FMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQ-VYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYC 361 (518)
Q Consensus 283 ~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~-~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~~ 361 (518)
+++.+|.|+| |.. .+..+.|..++..++. .+..+-.+-++.|+... ....+++..
T Consensus 3 v~lvlD~SgS------------M~~---~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~----~~~~~~~t~----- 58 (178)
T cd01451 3 VIFVVDASGS------------MAA---RHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTE----AEVLLPPTR----- 58 (178)
T ss_pred EEEEEECCcc------------CCC---ccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCC----ceEEeCCCC-----
Confidence 6789999997 542 2466777766666664 34455579999997641 111233321
Q ss_pred cccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcC---C-HHHH-HHHHHHccC
Q 010107 362 EVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVT---D-LQET-KDALVKASD 436 (518)
Q Consensus 362 ~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~---d-~~~t-~~~i~~as~ 436 (518)
+.+.+ .+.+..+...|.|++...|..+.+..+... .....-.++++||||..+ | .... .++..++..
T Consensus 59 ---~~~~~----~~~l~~l~~~G~T~l~~aL~~a~~~l~~~~-~~~~~~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~ 130 (178)
T cd01451 59 ---SVELA----KRRLARLPTGGGTPLAAGLLAAYELAAEQA-RDPGQRPLIVVITDGRANVGPDPTADRALAAARKLRA 130 (178)
T ss_pred ---CHHHH----HHHHHhCCCCCCCcHHHHHHHHHHHHHHHh-cCCCCceEEEEECCCCCCCCCCchhHHHHHHHHHHHh
Confidence 22233 245556677899999999999988762111 112234788999999865 2 2233 445555557
Q ss_pred CCeEEEEEecCCC--cchhhhhccc
Q 010107 437 LPLSILIIGVGGA--DFKEMEILDA 459 (518)
Q Consensus 437 lPlsiiiVGvG~~--~f~~m~~ld~ 459 (518)
.++.++.||+|.. +-..|++|-.
T Consensus 131 ~gi~v~~I~~~~~~~~~~~l~~iA~ 155 (178)
T cd01451 131 RGISALVIDTEGRPVRRGLAKDLAR 155 (178)
T ss_pred cCCcEEEEeCCCCccCccHHHHHHH
Confidence 7888899999875 3456777763
No 253
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.64 E-value=0.00095 Score=60.45 Aligned_cols=133 Identities=13% Similarity=0.112 Sum_probs=78.9
Q ss_pred eEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEecCCCCCCC
Q 010107 282 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYC 361 (518)
Q Consensus 282 ~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~~ 361 (518)
.++++||.|+| |... +.-....++.+++..+.. .+..+.++.|+.. . . ..++.
T Consensus 2 ~v~illD~SgS------------M~~~-k~~~a~~~~~~l~~~~~~--~~~~v~li~F~~~-~---~--~~~~~------ 54 (152)
T cd01462 2 PVILLVDQSGS------------MYGA-PEEVAKAVALALLRIALA--ENRDTYLILFDSE-F---Q--TKIVD------ 54 (152)
T ss_pred CEEEEEECCCC------------CCCC-HHHHHHHHHHHHHHHHHH--cCCcEEEEEeCCC-c---e--EEecC------
Confidence 47899999997 5422 223344455555555544 2346899999886 1 1 12221
Q ss_pred cccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCC-CcCCHHHHHHHHHHccCCCeE
Q 010107 362 EVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDG-VVTDLQETKDALVKASDLPLS 440 (518)
Q Consensus 362 ~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG-~i~d~~~t~~~i~~as~lPls 440 (518)
.-..+..+++. +..+...|.|++++.+..+.+...+. ...-.+++||||| +-.+-.++.++...+..-.+-
T Consensus 55 ~~~~~~~~~~~----l~~~~~~ggT~l~~al~~a~~~l~~~----~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~ 126 (152)
T cd01462 55 KTDDLEEPVEF----LSGVQLGGGTDINKALRYALELIERR----DPRKADIVLITDGYEGGVSDELLREVELKRSRVAR 126 (152)
T ss_pred CcccHHHHHHH----HhcCCCCCCcCHHHHHHHHHHHHHhc----CCCCceEEEECCCCCCCCCHHHHHHHHHHHhcCcE
Confidence 11223444443 33456789999999999998876543 1223578999999 444555554333333344566
Q ss_pred EEEEecCCC
Q 010107 441 ILIIGVGGA 449 (518)
Q Consensus 441 iiiVGvG~~ 449 (518)
|..||||++
T Consensus 127 v~~~~~g~~ 135 (152)
T cd01462 127 FVALALGDH 135 (152)
T ss_pred EEEEEecCC
Confidence 777777764
No 254
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=97.64 E-value=0.0005 Score=66.82 Aligned_cols=146 Identities=19% Similarity=0.248 Sum_probs=92.9
Q ss_pred eeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCC---CCcceeeecccCCCCCceeEEecCCC
Q 010107 281 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSD---KRFPAWGFGARPIDGPVSHCFNLNGS 357 (518)
Q Consensus 281 ~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~d---~~~~~~gFG~~~~~~~~~~~f~l~~~ 357 (518)
+.+++.+|-|+| |. ...++++...+..++..++.. -++-+..|+..+ .-.|+|+-.
T Consensus 3 ~DlvfllD~S~S------------m~----~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~-----~~~~~l~~~ 61 (224)
T cd01475 3 TDLVFLIDSSRS------------VR----PENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTV-----KQEFPLGRF 61 (224)
T ss_pred ccEEEEEeCCCC------------CC----HHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCce-----eEEeccccc
Confidence 578999999997 44 246788888888888887643 478899998872 224776521
Q ss_pred CCCCcccChHHHHHHHHhhhcccee-cCCCChHHHHHHHHHHHHhh-hcccCC---ceEEEEEEeCCCcCC-HHHHHHHH
Q 010107 358 NSYCEVEGIPGIMMAYTSALHNVNL-AGPTLFGPVISNAALIAGQS-LANHGQ---KYFVLLIITDGVVTD-LQETKDAL 431 (518)
Q Consensus 358 ~~~~~~~g~~~i~~~Y~~~~~~~~~-~gpt~f~pvi~~~~~~a~~~-~~~~~~---~y~vlliltdG~i~d-~~~t~~~i 431 (518)
...+.+.++- ..++. .|.|+..-.|+.+.+.+-.. ...... .--++++||||.-.| ..+..+
T Consensus 62 ------~~~~~l~~~i----~~i~~~~~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~~~~~~a~-- 129 (224)
T cd01475 62 ------KSKADLKRAV----RRMEYLETGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDDVSEVAA-- 129 (224)
T ss_pred ------CCHHHHHHHH----HhCcCCCCCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCcccHHHHHH--
Confidence 1123444433 33332 46687777777776643211 001111 257889999998754 334333
Q ss_pred HHccCCCeEEEEEecCCCcchhhhhcccC
Q 010107 432 VKASDLPLSILIIGVGGADFKEMEILDAD 460 (518)
Q Consensus 432 ~~as~lPlsiiiVGvG~~~f~~m~~ld~d 460 (518)
++-..-+.|..||||+.+...|+.+-+.
T Consensus 130 -~lk~~gv~i~~VgvG~~~~~~L~~ias~ 157 (224)
T cd01475 130 -KARALGIEMFAVGVGRADEEELREIASE 157 (224)
T ss_pred -HHHHCCcEEEEEeCCcCCHHHHHHHhCC
Confidence 3335678999999999888878777743
No 255
>PLN02270 phospholipase D alpha
Probab=97.62 E-value=0.00056 Score=76.54 Aligned_cols=164 Identities=13% Similarity=0.224 Sum_probs=108.4
Q ss_pred EEEEeeeeeeCC-CCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEeccccccccceeEE
Q 010107 14 VEVGRTEVVLNS-LNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLT 92 (518)
Q Consensus 14 ~ev~rTevi~~~-lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~~~~~~~~ 92 (518)
..|+||.||.|. .||+|+|.|.+..- -....+.|.|-|.|.. ...+||.+.+++.+|+....-.-|
T Consensus 58 a~v~rtr~~~~~~~~p~w~e~f~i~~a-h~~~~v~f~vkd~~~~------------g~~~ig~~~~p~~~~~~g~~i~~~ 124 (808)
T PLN02270 58 ARVGRTRKIENEPKNPRWYESFHIYCA-HMASNIIFTVKDDNPI------------GATLIGRAYIPVEEILDGEEVDRW 124 (808)
T ss_pred cEEEEEeecCCCCCCCccccceEEeec-cCcceEEEEEecCCcc------------CceEEEEEEEEHHHhcCCCccccE
Confidence 479999999885 69999999988764 3346899999988842 467999999999999987667779
Q ss_pred EeccCCcccccccccCCCCCCCC-cccceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeE
Q 010107 93 LDLVRREETITPITEESNPSNRP-KHCGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPV 171 (518)
Q Consensus 93 ~~L~~~~~~i~~~~~~~~~~~~~-~~~G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~ 171 (518)
+++.+. .+ ++ +...+|++++.+....... .-.+.+...+..|-...|+.... |.++..
T Consensus 125 ~~~~~~-----------~~--~p~~~~~~~~~~~~f~~~~~~~----~~~~gv~~~~~~gvp~t~f~~r~----g~~vtl 183 (808)
T PLN02270 125 VEILDN-----------DK--NPIHGGSKIHVKLQYFEVTKDR----NWGRGIRSAKFPGVPYTFFSQRQ----GCKVSL 183 (808)
T ss_pred EeccCC-----------CC--CcCCCCCEEEEEEEEEEcccCc----chhcccCCcCcCCCCCcccccCC----CCeeEE
Confidence 998652 11 11 2335888998886643321 13334433455666666776544 446778
Q ss_pred eeeccccCCCCCceee-----eE--Eeee----ccCCCCccEEEEEEeecC
Q 010107 172 CKTEVLKNETKPTWKS-----VF--LNIQ----QVGSKDSPLIIECFNFNS 211 (518)
Q Consensus 172 ~kTevik~tlnP~W~e-----f~--~~~~----~l~~~~~~L~veV~D~d~ 211 (518)
|+-.-+..+.-|.-.- +. -..+ .+....+.|-|.-|+.+.
T Consensus 184 yqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~AI~~Ar~~IyI~GW~~d~ 234 (808)
T PLN02270 184 YQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDAITNAKHLIYITGWSVYT 234 (808)
T ss_pred eccccCCCCCCCccccCCCcccchhhhHHHHHHHHHhhhcEEEEEEeecCC
Confidence 8888877776663221 00 0001 112235678888888774
No 256
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=97.55 E-value=0.0012 Score=65.76 Aligned_cols=141 Identities=16% Similarity=0.218 Sum_probs=92.9
Q ss_pred eeeEEEEeccccCCCCCCCCCCccccCCC-CCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEecCCCC
Q 010107 280 ELNFMVAVDFTASNGNPRLPDSLHYLDPS-GRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSN 358 (518)
Q Consensus 280 ~~~~~~~iDft~sN~~~~~~~slH~~~~~-~~~n~y~~ai~~i~~i~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~ 358 (518)
+.++++|||-|.| |... -.++..+ |+..|.+.+..-.. +++-+.+||+.+. + ..||+-+.
T Consensus 60 ~~qIvlaID~S~S------------M~~~~~~~~ale-ak~lIs~al~~Le~-g~vgVv~Fg~~~~---~--v~Plt~d~ 120 (266)
T cd01460 60 DYQILIAIDDSKS------------MSENNSKKLALE-SLCLVSKALTLLEV-GQLGVCSFGEDVQ---I--LHPFDEQF 120 (266)
T ss_pred CceEEEEEecchh------------cccccccccHHH-HHHHHHHHHHhCcC-CcEEEEEeCCCce---E--eCCCCCCc
Confidence 4789999999996 3322 1356665 88899998888865 5599999999731 1 12332221
Q ss_pred CCCcccChHHHHHHHHhhhccceec-CCCChHHHHHHHHHHHHhhhcccCC--ceEEEEEEeCCCcCCHHHHH-HHHHHc
Q 010107 359 SYCEVEGIPGIMMAYTSALHNVNLA-GPTLFGPVISNAALIAGQSLANHGQ--KYFVLLIITDGVVTDLQETK-DALVKA 434 (518)
Q Consensus 359 ~~~~~~g~~~i~~~Y~~~~~~~~~~-gpt~f~pvi~~~~~~a~~~~~~~~~--~y~vlliltdG~i~d~~~t~-~~i~~a 434 (518)
. . ++.-+.+....+. +-|+++..|..+.+.-......... .--++||||||...|-+... .++.+|
T Consensus 121 ~--------~--~a~~~~l~~~~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a 190 (266)
T cd01460 121 S--------S--QSGPRILNQFTFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREA 190 (266)
T ss_pred h--------h--hHHHHHhCcccCCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHH
Confidence 1 1 2223344444444 4599999999998876543111111 23789999999965555555 447777
Q ss_pred cCCCeEEEEEecCCC
Q 010107 435 SDLPLSILIIGVGGA 449 (518)
Q Consensus 435 s~lPlsiiiVGvG~~ 449 (518)
....+.+++|||-+.
T Consensus 191 ~e~~i~l~~I~ld~~ 205 (266)
T cd01460 191 REQNVFVVFIIIDNP 205 (266)
T ss_pred HHcCCeEEEEEEcCC
Confidence 788999999999765
No 257
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=97.54 E-value=0.0026 Score=59.97 Aligned_cols=166 Identities=16% Similarity=0.159 Sum_probs=108.2
Q ss_pred EEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccc-c--CCCCcceeeecccCCCCCceeEEecCCCCC
Q 010107 283 FMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVY-D--SDKRFPAWGFGARPIDGPVSHCFNLNGSNS 359 (518)
Q Consensus 283 ~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~y-d--~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~ 359 (518)
.+++||.|.| + ...+..||.++.+..++..++..| | +..++-+..|+++.+ .-.-|+++|
T Consensus 6 ~vi~lD~S~s---------M--~a~D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a----~v~~plT~D-- 68 (187)
T cd01452 6 TMICIDNSEY---------M--RNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSP----EVLVTLTND-- 68 (187)
T ss_pred EEEEEECCHH---------H--HcCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCce----EEEECCCCC--
Confidence 5899999996 2 122346899999999998887333 2 345677888888411 112456554
Q ss_pred CCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcCCHHHHHHHHHHccCCCe
Q 010107 360 YCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLPL 439 (518)
Q Consensus 360 ~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~lPl 439 (518)
..+-...+..+.+.|.+++...|+.|...-+... ...+.--|++|++++.-+|.++..+++.++.+..+
T Consensus 69 ----------~~~~~~~L~~i~~~g~~~l~~AL~~A~~~L~~~~-~~~~~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I 137 (187)
T cd01452 69 ----------QGKILSKLHDVQPKGKANFITGIQIAQLALKHRQ-NKNQKQRIVAFVGSPIEEDEKDLVKLAKRLKKNNV 137 (187)
T ss_pred ----------HHHHHHHHHhCCCCCcchHHHHHHHHHHHHhcCC-CcCCcceEEEEEecCCcCCHHHHHHHHHHHHHcCC
Confidence 1222455556778899999998887765544321 12233466777777766677777788888888899
Q ss_pred EEEEEecCCC--cchhhhhcccCCCcccccCCCCcccCceeeeeeCcccC
Q 010107 440 SILIIGVGGA--DFKEMEILDADKGERLESSTGRVASRDIVQFVPLKDVQ 487 (518)
Q Consensus 440 siiiVGvG~~--~f~~m~~ld~d~~~~l~~~~g~~~~rD~v~Fv~~~~~~ 487 (518)
.+-+||+|+. +-..++.|- +. ++ .-|+-+||....-.
T Consensus 138 ~v~vI~~G~~~~~~~~l~~~~-~~----~~------~~~~s~~~~~~~~~ 176 (187)
T cd01452 138 SVDIINFGEIDDNTEKLTAFI-DA----VN------GKDGSHLVSVPPGE 176 (187)
T ss_pred eEEEEEeCCCCCCHHHHHHHH-HH----hc------CCCCceEEEeCCCC
Confidence 9999999975 455555555 22 11 12677888876644
No 258
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=97.54 E-value=0.00084 Score=61.83 Aligned_cols=150 Identities=18% Similarity=0.226 Sum_probs=92.5
Q ss_pred eEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcc---cccCCCCcceeeecccCCCCCceeEEecCCCC
Q 010107 282 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQ---VYDSDKRFPAWGFGARPIDGPVSHCFNLNGSN 358 (518)
Q Consensus 282 ~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~---~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~ 358 (518)
.+++.||-|+| |.. ..++++...+..++. ..+..-++.+.-||..+ ...|+++..
T Consensus 1 DivflvD~S~s------------m~~----~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~-----~~~~~~~~~- 58 (178)
T PF00092_consen 1 DIVFLVDTSGS------------MSG----DNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSA-----RVLFSLTDY- 58 (178)
T ss_dssp EEEEEEE-STT------------SCH----HHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSE-----EEEEETTSH-
T ss_pred CEEEEEeCCCC------------Cch----HHHHHHHHHHHHHHHhhhccccccccceeeeeccc-----ccccccccc-
Confidence 47899999997 432 335555555555555 55666778888888762 234555321
Q ss_pred CCCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhh-hcccCCceEEEEEEeCCCcCCHHHHHHHHHHccC-
Q 010107 359 SYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQS-LANHGQKYFVLLIITDGVVTDLQETKDALVKASD- 436 (518)
Q Consensus 359 ~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~-~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~- 436 (518)
...+.++++- ........|.|+++..|+.|.+..... .........++++||||..++-............
T Consensus 59 -----~~~~~~~~~i--~~~~~~~~g~t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~ 131 (178)
T PF00092_consen 59 -----QSKNDLLNAI--NDSIPSSGGGTNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSDSPSEEAANLKKS 131 (178)
T ss_dssp -----SSHHHHHHHH--HTTGGCCBSSB-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHSGHHHHHHHHHHH
T ss_pred -----cccccccccc--cccccccchhhhHHHHHhhhhhcccccccccccccccceEEEEeecccCCcchHHHHHHHHHh
Confidence 2233344322 133345678999999999998875532 1123468899999999999887544443333332
Q ss_pred CCeEEEEEecCCCcchhhhhcccC
Q 010107 437 LPLSILIIGVGGADFKEMEILDAD 460 (518)
Q Consensus 437 lPlsiiiVGvG~~~f~~m~~ld~d 460 (518)
.-+.++.||++..+=..|+.|-+.
T Consensus 132 ~~i~~~~ig~~~~~~~~l~~la~~ 155 (178)
T PF00092_consen 132 NGIKVIAIGIDNADNEELRELASC 155 (178)
T ss_dssp CTEEEEEEEESCCHHHHHHHHSHS
T ss_pred cCcEEEEEecCcCCHHHHHHHhCC
Confidence 577777777756677777777733
No 259
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.53 E-value=5.2e-05 Score=84.60 Aligned_cols=86 Identities=15% Similarity=0.251 Sum_probs=70.8
Q ss_pred EEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCCCC
Q 010107 136 ELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGK 214 (518)
Q Consensus 136 ~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~~~ 214 (518)
+.+++|-+|...|.+|++|||+++.+.. ....-+.+.+.+|+||+|.+ |++.. .-...+.+.++|||+|..+.
T Consensus 617 Vyvv~A~~L~p~D~ng~adpYv~l~lGk----~~~~d~~~yip~tlnPVfgkmfel~~--~lp~ek~l~v~vyd~D~~~~ 690 (1105)
T KOG1326|consen 617 VYVVEAFSLQPSDGNGDADPYVKLLLGK----KRTLDRAHYIPNTLNPVFGKMFELEC--LLPFEKDLIVEVYDHDLEAQ 690 (1105)
T ss_pred EEEEEeeeccccCCCCCcCceeeeeecc----chhhhhhhcCcCCCCcHHHHHHHhhc--ccchhhcceeEEEEeecccc
Confidence 3468999999999999999999998853 34457888999999999998 44332 22336789999999999999
Q ss_pred CcceEEEEEechh
Q 010107 215 HDLIGKVQKSLAD 227 (518)
Q Consensus 215 ~d~IG~~~i~l~~ 227 (518)
++.||+..++|+.
T Consensus 691 d~~iget~iDLEn 703 (1105)
T KOG1326|consen 691 DEKIGETTIDLEN 703 (1105)
T ss_pred cchhhceehhhhh
Confidence 9999999998765
No 260
>PRK13685 hypothetical protein; Provisional
Probab=97.50 E-value=0.0029 Score=65.15 Aligned_cols=142 Identities=18% Similarity=0.142 Sum_probs=92.3
Q ss_pred eeeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEecCCCCC
Q 010107 280 ELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNS 359 (518)
Q Consensus 280 ~~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~ 359 (518)
..++++++|-|+| +...+ ..++..+.|-.++..++....++.++-++.|++... . ..|++.|
T Consensus 88 ~~~vvlvlD~S~S---------M~~~D--~~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa~~a~--~---~~p~t~d-- 149 (326)
T PRK13685 88 RAVVMLVIDVSQS---------MRATD--VEPNRLAAAQEAAKQFADELTPGINLGLIAFAGTAT--V---LVSPTTN-- 149 (326)
T ss_pred CceEEEEEECCcc---------ccCCC--CCCCHHHHHHHHHHHHHHhCCCCCeEEEEEEcCcee--e---cCCCCCC--
Confidence 4679999999996 22212 136888999999999999986677799999998721 0 1232211
Q ss_pred CCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhh----cccCCceEEEEEEeCCCcCCH------HHHHH
Q 010107 360 YCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSL----ANHGQKYFVLLIITDGVVTDL------QETKD 429 (518)
Q Consensus 360 ~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~----~~~~~~y~vlliltdG~i~d~------~~t~~ 429 (518)
.++-...+..++..+-|+...-|..+.+...+.. .......-.+++||||+-+.- ....+
T Consensus 150 ----------~~~l~~~l~~l~~~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~~~~~~~~~ 219 (326)
T PRK13685 150 ----------REATKNAIDKLQLADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNPDNPRGAYT 219 (326)
T ss_pred ----------HHHHHHHHHhCCCCCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCCCCcccHHH
Confidence 1222345556667788999888888887765320 001122346789999976421 22334
Q ss_pred HHHHccCCCeEEEEEecCCC
Q 010107 430 ALVKASDLPLSILIIGVGGA 449 (518)
Q Consensus 430 ~i~~as~lPlsiiiVGvG~~ 449 (518)
+...|....+.|-.||+|..
T Consensus 220 aa~~a~~~gi~i~~Ig~G~~ 239 (326)
T PRK13685 220 AARTAKDQGVPISTISFGTP 239 (326)
T ss_pred HHHHHHHcCCeEEEEEECCC
Confidence 55566677888888899873
No 261
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.40 E-value=0.00068 Score=74.29 Aligned_cols=92 Identities=14% Similarity=0.139 Sum_probs=67.7
Q ss_pred EEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee--eEEeeeccCCCCccEEEEEEeecCCC
Q 010107 136 ELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS--VFLNIQQVGSKDSPLIIECFNFNSNG 213 (518)
Q Consensus 136 ~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e--f~~~~~~l~~~~~~L~veV~D~d~~~ 213 (518)
+-++.|+.|+... -|..-||++|.+.+..-.....++|.|+.+.+||+|+. |.|.+. .+.-.-|+|.|+|.|-.+
T Consensus 1069 v~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~--nPe~A~lRF~V~eeDmfs 1145 (1267)
T KOG1264|consen 1069 VKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIY--NPEFAFLRFVVYEEDMFS 1145 (1267)
T ss_pred EEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEee--CCceEEEEEEEecccccC
Confidence 3357899998542 23345999998876322223455666777889999994 554444 334578999999999999
Q ss_pred CCcceEEEEEechhhhh
Q 010107 214 KHDLIGKVQKSLADLEK 230 (518)
Q Consensus 214 ~~d~IG~~~i~l~~L~~ 230 (518)
...|||++..++..++.
T Consensus 1146 ~~~FiaqA~yPv~~ik~ 1162 (1267)
T KOG1264|consen 1146 DPNFLAQATYPVKAIKS 1162 (1267)
T ss_pred Ccceeeeeecchhhhhc
Confidence 88999999999999965
No 262
>PLN02228 Phosphoinositide phospholipase C
Probab=97.33 E-value=0.00033 Score=76.25 Aligned_cols=67 Identities=19% Similarity=0.385 Sum_probs=56.5
Q ss_pred EeeeeeeCCCCCce-eeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEeccccccccceeEEEec
Q 010107 17 GRTEVVLNSLNPTW-ITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDL 95 (518)
Q Consensus 17 ~rTevi~~~lNP~f-~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~~~~~~~~~~L 95 (518)
.||++++|+.||+| ++.|.|.....+.--|||.|+|.|.. +.++|+|++.++|..|.. |- ...+|
T Consensus 476 ~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~-----------~~d~figq~~lPv~~Lr~--GY-R~VpL 541 (567)
T PLN02228 476 YRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQDYDND-----------TQNDFAGQTCLPLPELKS--GV-RAVRL 541 (567)
T ss_pred ceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEEeCCCC-----------CCCCEEEEEEcchhHhhC--Ce-eEEEc
Confidence 49999999999999 99999998888888999999999853 478999999999999953 32 24577
Q ss_pred cC
Q 010107 96 VR 97 (518)
Q Consensus 96 ~~ 97 (518)
.+
T Consensus 542 ~~ 543 (567)
T PLN02228 542 HD 543 (567)
T ss_pred cC
Confidence 55
No 263
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.28 E-value=0.0036 Score=57.89 Aligned_cols=146 Identities=18% Similarity=0.206 Sum_probs=94.2
Q ss_pred eEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccC---CCCcceeeecccCCCCCceeEEecCCCC
Q 010107 282 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDS---DKRFPAWGFGARPIDGPVSHCFNLNGSN 358 (518)
Q Consensus 282 ~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~---d~~~~~~gFG~~~~~~~~~~~f~l~~~~ 358 (518)
.+++.+|-|.| +. ...|+++..-+.+++..|+- .-++.+.-|+..+ ...|.|+.-
T Consensus 2 DivfllD~S~S------------i~----~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~-----~~~~~l~~~- 59 (165)
T cd01481 2 DIVFLIDGSDN------------VG----SGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTP-----RPEFYLNTH- 59 (165)
T ss_pred CEEEEEeCCCC------------cC----HHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCe-----eEEEecccc-
Confidence 47889998886 33 35678888878888888763 4577788887762 234776531
Q ss_pred CCCcccChHHHHHHHHhhhcccee-cC-CCChHHHHHHHHHHHHhhhc---ccCCceEEEEEEeCCCcCC-HHHHHHHHH
Q 010107 359 SYCEVEGIPGIMMAYTSALHNVNL-AG-PTLFGPVISNAALIAGQSLA---NHGQKYFVLLIITDGVVTD-LQETKDALV 432 (518)
Q Consensus 359 ~~~~~~g~~~i~~~Y~~~~~~~~~-~g-pt~f~pvi~~~~~~a~~~~~---~~~~~y~vlliltdG~i~d-~~~t~~~i~ 432 (518)
...++++++-. .+++ .| .|+-...|+.+.+..-.... ......-+|++||||.-+| ..+..+.+.
T Consensus 60 -----~~~~~l~~~i~----~i~~~~g~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d~~~~~a~~lr 130 (165)
T cd01481 60 -----STKADVLGAVR----RLRLRGGSQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQDDVERPAVALK 130 (165)
T ss_pred -----CCHHHHHHHHH----hcccCCCCcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcchHHHHHHHHH
Confidence 12345555443 3333 34 47888888888765432210 1124578899999998865 333334443
Q ss_pred HccCCCeEEEEEecCCCcchhhhhcccCC
Q 010107 433 KASDLPLSILIIGVGGADFKEMEILDADK 461 (518)
Q Consensus 433 ~as~lPlsiiiVGvG~~~f~~m~~ld~d~ 461 (518)
+..+-|+.||+|..+...|+.+-++.
T Consensus 131 ---~~gv~i~~vG~~~~~~~eL~~ias~p 156 (165)
T cd01481 131 ---RAGIVPFAIGARNADLAELQQIAFDP 156 (165)
T ss_pred ---HCCcEEEEEeCCcCCHHHHHHHhCCC
Confidence 45688888999988888888877543
No 264
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=97.27 E-value=0.0003 Score=77.26 Aligned_cols=68 Identities=21% Similarity=0.335 Sum_probs=57.0
Q ss_pred EEeee-eeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEeccccccccceeEEEe
Q 010107 16 VGRTE-VVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLD 94 (518)
Q Consensus 16 v~rTe-vi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~~~~~~~~~~ 94 (518)
..||+ |..|+-||.|++.|+|.+...+.--|||+|+|.|.. +++||+|+..+++.+|... - ...+
T Consensus 658 ~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~-----------~~ddF~GQ~tlP~~~L~~G--y-RhVp 723 (746)
T KOG0169|consen 658 EQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYI-----------GKDDFIGQTTLPVSELRQG--Y-RHVP 723 (746)
T ss_pred hhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEecCCC-----------CcccccceeeccHHHhhCc--e-eeee
Confidence 45899 567889999999999999999999999999999964 6899999999999999643 2 2357
Q ss_pred ccC
Q 010107 95 LVR 97 (518)
Q Consensus 95 L~~ 97 (518)
|.+
T Consensus 724 L~~ 726 (746)
T KOG0169|consen 724 LLS 726 (746)
T ss_pred ecC
Confidence 755
No 265
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.17 E-value=0.0011 Score=72.85 Aligned_cols=68 Identities=26% Similarity=0.340 Sum_probs=55.8
Q ss_pred EEeeeeeeCCCCCcee-eEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEeccccccccceeEEEe
Q 010107 16 VGRTEVVLNSLNPTWI-TKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLD 94 (518)
Q Consensus 16 v~rTevi~~~lNP~f~-~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~~~~~~~~~~ 94 (518)
..+|.|+.|.|||+|+ ++|.|+.+..+.--|||.|||.|- ++...|||++.+++..|...- ...|
T Consensus 1103 ~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm-----------fs~~~FiaqA~yPv~~ik~Gf---RsVp 1168 (1267)
T KOG1264|consen 1103 FKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM-----------FSDPNFLAQATYPVKAIKSGF---RSVP 1168 (1267)
T ss_pred eEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc-----------cCCcceeeeeecchhhhhccc---eeee
Confidence 4456667899999999 999999988888899999999995 456789999999999886532 3357
Q ss_pred ccC
Q 010107 95 LVR 97 (518)
Q Consensus 95 L~~ 97 (518)
|++
T Consensus 1169 LkN 1171 (1267)
T KOG1264|consen 1169 LKN 1171 (1267)
T ss_pred ccc
Confidence 766
No 266
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=5.4e-05 Score=75.31 Aligned_cols=111 Identities=16% Similarity=0.223 Sum_probs=87.9
Q ss_pred cceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceeeeEEeeeccCC
Q 010107 118 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVFLNIQQVGS 197 (518)
Q Consensus 118 ~G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~ef~~~~~~l~~ 197 (518)
.|.+.+...|...++.+-+.+..|+.|+.+++++..|||++..+++--+ .....+|++..+++||.|++-. ....+.+
T Consensus 79 lg~~~~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~-kl~slr~~t~~n~lN~~w~ete-v~~~i~~ 156 (362)
T KOG1013|consen 79 LGALEFELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAG-KLNSLRTKTTRNTLNPEWNETE-VYEGITD 156 (362)
T ss_pred ccchhhhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchh-hhhhhhHHhhccCcCcceeccc-eeccccc
Confidence 5777777777777777777888999999999999999999999885322 3445899999999999999943 2222311
Q ss_pred ---CCccEEEEEEeecCCCCCcceEEEEEechhhhh
Q 010107 198 ---KDSPLIIECFNFNSNGKHDLIGKVQKSLADLEK 230 (518)
Q Consensus 198 ---~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~ 230 (518)
..+.+++.|.|.+....++++|+..+++..|..
T Consensus 157 ~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p 192 (362)
T KOG1013|consen 157 DDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKP 192 (362)
T ss_pred chhhhhhhheeeccCcccccccCcccchhhhhccCh
Confidence 245688889999998889999999999888864
No 267
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=97.09 E-value=0.015 Score=56.23 Aligned_cols=153 Identities=6% Similarity=0.031 Sum_probs=95.8
Q ss_pred eEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccc---ccCCCCcceeeecccCCCC--CceeEEecCC
Q 010107 282 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQV---YDSDKRFPAWGFGARPIDG--PVSHCFNLNG 356 (518)
Q Consensus 282 ~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~---yd~d~~~~~~gFG~~~~~~--~~~~~f~l~~ 356 (518)
.++++||.|.| |+.......++..+.|+..+..++++ ..+.-++-++.||.....+ ...|++.+..
T Consensus 3 ~ivf~iDvS~S---------M~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~~~ 73 (218)
T cd01458 3 SVVFLVDVSPS---------MFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVLLD 73 (218)
T ss_pred EEEEEEeCCHH---------HcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEeec
Confidence 47899999985 43111111368999999999999997 5666679999999874222 3456665531
Q ss_pred CCCCCcccChHHHHHHHHhhhccce--------ecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcC------
Q 010107 357 SNSYCEVEGIPGIMMAYTSALHNVN--------LAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVT------ 422 (518)
Q Consensus 357 ~~~~~~~~g~~~i~~~Y~~~~~~~~--------~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~------ 422 (518)
+.-|.. ..++.+.+.+.... -++.|.+..+|..+.+.-.+.. ....=-.+++||||+-.
T Consensus 74 -l~~~~~----~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~--~~~~~k~IvL~TDg~~p~~~~~~ 146 (218)
T cd01458 74 -LDTPGA----ERVEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGK--KKKSHKRIFLFTNNDDPHGGDSI 146 (218)
T ss_pred -CCCCCH----HHHHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhcc--ccccccEEEEECCCCCCCCCCHH
Confidence 222322 23333333333221 2457899999988877655411 11122467899999753
Q ss_pred CHHHHHHHHHHccCCCeEEEEEecCCCc
Q 010107 423 DLQETKDALVKASDLPLSILIIGVGGAD 450 (518)
Q Consensus 423 d~~~t~~~i~~as~lPlsiiiVGvG~~~ 450 (518)
+.++..+.+.+....-+.|..||+|..+
T Consensus 147 ~~~~~~~~a~~l~~~gI~i~~i~i~~~~ 174 (218)
T cd01458 147 KDSQAAVKAEDLKDKGIELELFPLSSPG 174 (218)
T ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCCC
Confidence 1244455566666778999999998754
No 268
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=97.09 E-value=0.0011 Score=58.56 Aligned_cols=109 Identities=26% Similarity=0.354 Sum_probs=73.9
Q ss_pred EEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEecCCCCCCCc
Q 010107 283 FMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYCE 362 (518)
Q Consensus 283 ~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~~~ 362 (518)
+++|||-|+| |+ .....+++..+..+++.+ ...+.++=|-++...... |. .
T Consensus 1 i~vaiDtSGS------------is----~~~l~~fl~ev~~i~~~~--~~~v~vi~~D~~v~~~~~---~~--~------ 51 (126)
T PF09967_consen 1 IVVAIDTSGS------------IS----DEELRRFLSEVAGILRRF--PAEVHVIQFDAEVQDVQV---FR--S------ 51 (126)
T ss_pred CEEEEECCCC------------CC----HHHHHHHHHHHHHHHHhC--CCCEEEEEECCEeeeeeE---Ee--c------
Confidence 4799999998 65 257888999999999999 344888888776221111 11 0
Q ss_pred ccChHHHHHHHHhhhcccee--cCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcCCHHHHHHHHHHccCCCeE
Q 010107 363 VEGIPGIMMAYTSALHNVNL--AGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLPLS 440 (518)
Q Consensus 363 ~~g~~~i~~~Y~~~~~~~~~--~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~lPls 440 (518)
....+..+++ .|.|+|.|+++.+.+. .....++++||||.....+. +-..|+-
T Consensus 52 ----------~~~~~~~~~~~GgGGTdf~pvf~~~~~~--------~~~~~~vi~fTDg~~~~~~~-------~P~~~vl 106 (126)
T PF09967_consen 52 ----------LEDELRDIKLKGGGGTDFRPVFEYLEEN--------RPRPSVVIYFTDGEGWPPEE-------APPYPVL 106 (126)
T ss_pred ----------ccccccccccCCCCCCcchHHHHHHHhc--------CCCCCEEEEEeCCCCCCCCC-------CCCCcEE
Confidence 1122223333 4789999999988543 24567888999998854431 2278899
Q ss_pred EEEEe
Q 010107 441 ILIIG 445 (518)
Q Consensus 441 iiiVG 445 (518)
|++.|
T Consensus 107 Wvl~~ 111 (126)
T PF09967_consen 107 WVLPG 111 (126)
T ss_pred EEEeC
Confidence 99988
No 269
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=96.93 E-value=0.016 Score=58.64 Aligned_cols=139 Identities=20% Similarity=0.164 Sum_probs=79.2
Q ss_pred ceeeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccc-ccCCCCcceeeecccCCCCCceeEEecCCC
Q 010107 279 FELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQV-YDSDKRFPAWGFGARPIDGPVSHCFNLNGS 357 (518)
Q Consensus 279 ~~~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~-yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~ 357 (518)
..+++++.+|.|+| |. +....|..++...+.. +.++.++.++.|+..+. ..++++.+
T Consensus 52 ~p~~vvlvlD~SgS------------M~-----~~~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~~~-----~~~~~t~~ 109 (296)
T TIGR03436 52 LPLTVGLVIDTSGS------------MR-----NDLDRARAAAIRFLKTVLRPNDRVFVVTFNTRLR-----LLQDFTSD 109 (296)
T ss_pred CCceEEEEEECCCC------------ch-----HHHHHHHHHHHHHHHhhCCCCCEEEEEEeCCcee-----EeecCCCC
Confidence 46889999999997 43 2355666666666655 55667799999997621 11233221
Q ss_pred CCCCcccChHHHHHHHHhhhc-----------cceecCCCChHHHHHHHHH-HHHhhhcccCCceEEEEEEeCCCcCCHH
Q 010107 358 NSYCEVEGIPGIMMAYTSALH-----------NVNLAGPTLFGPVISNAAL-IAGQSLANHGQKYFVLLIITDGVVTDLQ 425 (518)
Q Consensus 358 ~~~~~~~g~~~i~~~Y~~~~~-----------~~~~~gpt~f~pvi~~~~~-~a~~~~~~~~~~y~vlliltdG~i~d~~ 425 (518)
.+.+.++-.+.-. .+...|.|++...|..++. ...+.. ...+.--++++||||.-++..
T Consensus 110 --------~~~l~~~l~~l~~~~~~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~-~~~p~rk~iIllTDG~~~~~~ 180 (296)
T TIGR03436 110 --------PRLLEAALNRLKPPLRTDYNSSGAFVRDGGGTALYDAITLAALEQLANAL-AGIPGRKALIVISDGGDNRSR 180 (296)
T ss_pred --------HHHHHHHHHhccCCCccccccccccccCCCcchhHHHHHHHHHHHHHHhh-cCCCCCeEEEEEecCCCcchH
Confidence 2233333222111 1223788888887765543 222211 001122478999999765544
Q ss_pred HHHHH-HHHccCCCeEEEEEecCC
Q 010107 426 ETKDA-LVKASDLPLSILIIGVGG 448 (518)
Q Consensus 426 ~t~~~-i~~as~lPlsiiiVGvG~ 448 (518)
...+. +..+....+.|..||+|+
T Consensus 181 ~~~~~~~~~~~~~~v~vy~I~~~~ 204 (296)
T TIGR03436 181 DTLERAIDAAQRADVAIYSIDARG 204 (296)
T ss_pred HHHHHHHHHHHHcCCEEEEeccCc
Confidence 33333 333345678888888874
No 270
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=96.90 E-value=0.017 Score=63.90 Aligned_cols=149 Identities=17% Similarity=0.120 Sum_probs=100.1
Q ss_pred CceeeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhc-ccccCCCCcceeeecccCCCCCceeEEecCC
Q 010107 278 GFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVL-QVYDSDKRFPAWGFGARPIDGPVSHCFNLNG 356 (518)
Q Consensus 278 g~~~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~-~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~ 356 (518)
.....+++.||.|+| |. .+....|-.++...+ ..|-..-.+-++.|++.... + ..|.+
T Consensus 399 ~~~~~vvfvvD~SGS------------M~----~~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a~--~--~lppT- 457 (584)
T PRK13406 399 RSETTTIFVVDASGS------------AA----LHRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGAE--L--LLPPT- 457 (584)
T ss_pred cCCccEEEEEECCCC------------Cc----HhHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCcee--E--EcCCC-
Confidence 345889999999997 42 245666666666656 34766667999999664110 0 12211
Q ss_pred CCCCCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcCC-----------HH
Q 010107 357 SNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTD-----------LQ 425 (518)
Q Consensus 357 ~~~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~d-----------~~ 425 (518)
..++.+ .+.+..+.-.|.|.+++-|..+.+.+++... ...-.++++||||..+- .+
T Consensus 458 -------~~~~~~----~~~L~~l~~gGgTpL~~gL~~A~~~l~~~~~--~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~ 524 (584)
T PRK13406 458 -------RSLVRA----KRSLAGLPGGGGTPLAAGLDAAAALALQVRR--KGMTPTVVLLTDGRANIARDGTAGRAQAEE 524 (584)
T ss_pred -------cCHHHH----HHHHhcCCCCCCChHHHHHHHHHHHHHHhcc--CCCceEEEEEeCCCCCCCccccccccchhh
Confidence 122222 3566677788999999999999998776532 22346889999998752 14
Q ss_pred HHHHHHHHccCCCeEEEEEecCCCcchhhhhcccC
Q 010107 426 ETKDALVKASDLPLSILIIGVGGADFKEMEILDAD 460 (518)
Q Consensus 426 ~t~~~i~~as~lPlsiiiVGvG~~~f~~m~~ld~d 460 (518)
+..++...+....+.+++|++|......|++|-..
T Consensus 525 ~~~~~a~~~~~~gi~~~vId~g~~~~~~~~~LA~~ 559 (584)
T PRK13406 525 DALAAARALRAAGLPALVIDTSPRPQPQARALAEA 559 (584)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHh
Confidence 44555555556778899999998887788888733
No 271
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.84 E-value=0.022 Score=63.91 Aligned_cols=149 Identities=15% Similarity=0.156 Sum_probs=94.2
Q ss_pred ceeeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcc-cccCCCCcceeeecccCCCCCceeEEecCCC
Q 010107 279 FELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQ-VYDSDKRFPAWGFGARPIDGPVSHCFNLNGS 357 (518)
Q Consensus 279 ~~~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~-~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~ 357 (518)
....+++.+|.|+| |.. .+....|..++..++. .|-..-.+-+++|++.. ....+|++
T Consensus 464 ~~~~vv~vvD~SgS------------M~~---~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~----a~~~~p~t-- 522 (633)
T TIGR02442 464 AGNLVIFVVDASGS------------MAA---RGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEE----AEVLLPPT-- 522 (633)
T ss_pred CCceEEEEEECCcc------------CCC---ccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCC----ceEEcCCC--
Confidence 44789999999997 542 2567777777766664 46556679999997641 11123322
Q ss_pred CCCCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcCC-------HHHHHHH
Q 010107 358 NSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTD-------LQETKDA 430 (518)
Q Consensus 358 ~~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~d-------~~~t~~~ 430 (518)
.+.+.+ .+.+..+...|.|.++.-|..+.+...+........-.++++||||.-+. .++..++
T Consensus 523 ------~~~~~~----~~~L~~l~~gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~ 592 (633)
T TIGR02442 523 ------SSVELA----ARRLEELPTGGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTI 592 (633)
T ss_pred ------CCHHHH----HHHHHhCCCCCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChHHHHHHH
Confidence 222222 24566677889999999999999887743212233456889999998643 2233333
Q ss_pred HHHccCCCeEEEEEecCCC--cchhhhhcc
Q 010107 431 LVKASDLPLSILIIGVGGA--DFKEMEILD 458 (518)
Q Consensus 431 i~~as~lPlsiiiVGvG~~--~f~~m~~ld 458 (518)
-.......+.+++|+.+.+ +...+++|-
T Consensus 593 a~~l~~~~i~~~vIdt~~~~~~~~~~~~lA 622 (633)
T TIGR02442 593 AAKLAARGILFVVIDTESGFVRLGLAEDLA 622 (633)
T ss_pred HHHHHhcCCeEEEEeCCCCCcchhHHHHHH
Confidence 3333345677888888765 456666665
No 272
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=96.83 E-value=0.019 Score=63.85 Aligned_cols=149 Identities=16% Similarity=0.068 Sum_probs=94.4
Q ss_pred cCceeeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccc-ccCCCCcceeeecccCCCCCceeEEecC
Q 010107 277 GGFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQV-YDSDKRFPAWGFGARPIDGPVSHCFNLN 355 (518)
Q Consensus 277 ~g~~~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~-yd~d~~~~~~gFG~~~~~~~~~~~f~l~ 355 (518)
......+++.||.|+| |. .+..+.|-.++..++.. |-..-.+-++.|++.... ..++.
T Consensus 404 ~~~~~~v~fvvD~SGS------------M~----~~rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a~----~~lp~- 462 (589)
T TIGR02031 404 RKSGRLLIFVVDASGS------------AA----VARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAAE----VLLPP- 462 (589)
T ss_pred cccCceEEEEEECCCC------------CC----hHHHHHHHHHHHHHHHhhccCCCEEEEEEECCCCce----EECCC-
Confidence 3455779999999997 53 24567676677666653 443346999999764100 11221
Q ss_pred CCCCCCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcC---C---------
Q 010107 356 GSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVT---D--------- 423 (518)
Q Consensus 356 ~~~~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~---d--------- 423 (518)
..+.+.+ .+.+..+...|.|.+++.|..+.+..++.. ....-.++++||||.-+ +
T Consensus 463 -------t~~~~~~----~~~L~~l~~gGgTpL~~gL~~A~~~~~~~~--~~~~~~~ivllTDG~~nv~~~~~~~~~~~~ 529 (589)
T TIGR02031 463 -------SRSVEQA----KRRLDVLPGGGGTPLAAGLAAAFQTALQAR--SSGGTPTIVLITDGRGNIPLDGDPESIKAD 529 (589)
T ss_pred -------CCCHHHH----HHHHhcCCCCCCCcHHHHHHHHHHHHHHhc--ccCCceEEEEECCCCCCCCCCccccccccc
Confidence 1223222 356778888999999999999999877542 11223578999999763 1
Q ss_pred ---H-HHHHHHHHHccCCCeEEEEEecCCCc--chhhhhccc
Q 010107 424 ---L-QETKDALVKASDLPLSILIIGVGGAD--FKEMEILDA 459 (518)
Q Consensus 424 ---~-~~t~~~i~~as~lPlsiiiVGvG~~~--f~~m~~ld~ 459 (518)
. ++...+........+.+++||+|... ...+++|-.
T Consensus 530 ~~~~~~~~~~~a~~~~~~gi~~~vid~~~~~~~~~~~~~lA~ 571 (589)
T TIGR02031 530 REQAAEEALALARKIREAGMPALVIDTAMRFVSTGFAQKLAR 571 (589)
T ss_pred chhHHHHHHHHHHHHHhcCCeEEEEeCCCCCccchHHHHHHH
Confidence 1 12222223333567899999999764 345777763
No 273
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.75 E-value=0.0039 Score=66.71 Aligned_cols=85 Identities=24% Similarity=0.346 Sum_probs=63.2
Q ss_pred CcCCCCCCCCcEEEEEEE-------------ecCCceeeEeeeccccCCCCCceeeeEEeeeccCCCCccEEEEEEeecC
Q 010107 145 DCKDLFSRNDPFLVISKI-------------VESGTHIPVCKTEVLKNETKPTWKSVFLNIQQVGSKDSPLIIECFNFNS 211 (518)
Q Consensus 145 ~~~d~~g~sDPyv~i~~~-------------~~~~~~~~~~kTevik~tlnP~W~ef~~~~~~l~~~~~~L~veV~D~d~ 211 (518)
...|.++++||-|.+... .+++.|..+.+|+++.+.+||.|.+ .+.+.+..+..+.|+++++|.+.
T Consensus 3 ~~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~~~~p~f~~-~~~l~y~fE~vQ~l~~~~~~~~~ 81 (529)
T KOG1327|consen 3 MAYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRNVLNPFFTK-KFLLQYRFEKVQLLRFEVYDIDS 81 (529)
T ss_pred cccccccccCceeeeeccCCCccccccccccccccccccccceeeeeccCCcccee-eechhheeeeeeeEEEEEeecCC
Confidence 344666777777776553 2334456678999999999999998 33444444457889999999876
Q ss_pred C----CCCcceEEEEEechhhhh
Q 010107 212 N----GKHDLIGKVQKSLADLEK 230 (518)
Q Consensus 212 ~----~~~d~IG~~~i~l~~L~~ 230 (518)
. ..++|+|+++..+.++..
T Consensus 82 ~~~~l~~~dflg~~~c~l~~ivs 104 (529)
T KOG1327|consen 82 RTPDLSSADFLGTAECTLSQIVS 104 (529)
T ss_pred ccCCcchhcccceeeeehhhhhh
Confidence 4 457999999999999975
No 274
>PLN02964 phosphatidylserine decarboxylase
Probab=96.66 E-value=0.0043 Score=68.78 Aligned_cols=85 Identities=21% Similarity=0.287 Sum_probs=61.4
Q ss_pred CCcEEEEEEEecCCceeeEeeeccccCCCCCceeee-EEeeeccCCCCccEEEEEEeecCCCCCcceEEEEEechhhhhc
Q 010107 153 NDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSV-FLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKL 231 (518)
Q Consensus 153 sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~ef-~~~~~~l~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~ 231 (518)
+|||+.+...+ .+++||...++|+||+||+. .+.+.. +.-...+|.|||+++.++++++|.|+++|.++...
T Consensus 68 ~~~~~~~~~~g-----~~~f~t~~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 68 KDKWLACVSFG-----EQTFRTETSDSTDKPVWNSEKKLLLEK--NGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CCcEEEEEEec-----ceeeeeccccccCCcccchhhceEecc--CCcceEEEEEEecCCCCHHHhhhheeecHhhccHH
Confidence 59998887664 36999999999999999982 222222 12334699999999999999999999988877542
Q ss_pred cC--CCceEEeeccc
Q 010107 232 HS--SGQGQNLFLST 244 (518)
Q Consensus 232 ~~--~~~~~~l~n~~ 244 (518)
+- -...|.+++++
T Consensus 141 qi~elkeaF~lfD~d 155 (644)
T PLN02964 141 EPESACESFDLLDPS 155 (644)
T ss_pred HHHHHHHHHHHHCCC
Confidence 11 11236666654
No 275
>PLN02964 phosphatidylserine decarboxylase
Probab=96.56 E-value=0.0014 Score=72.60 Aligned_cols=62 Identities=16% Similarity=0.259 Sum_probs=53.2
Q ss_pred EEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEeccccccc
Q 010107 14 VEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTR 86 (518)
Q Consensus 14 ~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~~ 86 (518)
++++||.+.++|+||+|++.-.+.+.-......+|.|||++. +++++.+|.|+++|.++...
T Consensus 79 ~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 79 EQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR-----------LSKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred ceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC-----------CCHHHhhhheeecHhhccHH
Confidence 589999999999999999988877765666677999999994 57899999999988887654
No 276
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=0.004 Score=63.29 Aligned_cols=110 Identities=19% Similarity=0.188 Sum_probs=78.3
Q ss_pred CCceEEEEEeecCCCcCCC-CCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceeeeEEeeeccCCCCccEEEEEE-e
Q 010107 131 SKTTTELILRCSDLDCKDL-FSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVFLNIQQVGSKDSPLIIECF-N 208 (518)
Q Consensus 131 ~~~li~~~i~a~~L~~~d~-~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~ef~~~~~~l~~~~~~L~veV~-D 208 (518)
.+++-+.++.|++|..+.. -..++||+++|++. .+.-+-..+|+...+|++|.+.. .+.+.. ......|.+.|| |
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~-~g~c~ak~ktk~A~kT~~plyqq-~l~f~~-sp~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLE-NGFCIAKKKTKSARKTLDPLYQQ-QLSFDQ-SPPGKYLQGTVWGD 344 (405)
T ss_pred cCceeEEEEecccccccCCcccccCceeEEEEcC-CCceecccccccccccCchhhhh-hhhhcc-CCCccEEEEEEecc
Confidence 4466677789999976652 23578999999984 45556788999999999997665 222222 334678999999 5
Q ss_pred ecCCCCCcceEEEEEechhhhhcc-CCCceEEeecc
Q 010107 209 FNSNGKHDLIGKVQKSLADLEKLH-SSGQGQNLFLS 243 (518)
Q Consensus 209 ~d~~~~~d~IG~~~i~l~~L~~~~-~~~~~~~l~n~ 243 (518)
+.+.....|+|.+.+-+.+|-... -...+|.++-.
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 777777889999999999985422 11245666543
No 277
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=96.43 E-value=0.0064 Score=51.47 Aligned_cols=56 Identities=27% Similarity=0.246 Sum_probs=44.7
Q ss_pred EEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEeccccccc
Q 010107 14 VEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTR 86 (518)
Q Consensus 14 ~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~~ 86 (518)
.+..||++ +.||.|++.|.|++ +....+.+.|||.... ..-.||..=+.|++|...
T Consensus 34 ~~kaRTr~---srnd~WnE~F~i~V--dk~nEiel~VyDk~~~------------~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 34 VERARTKP---SRNDRWNEDFEIPV--EKNNEEEVIVYDKGGD------------QPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred EEEEeccC---CCCCcccceEEEEe--cCCcEEEEEEEeCCCC------------eecceeeehhhHHHHHHH
Confidence 36888877 59999999998888 5677899999998763 456788888888887643
No 278
>PLN02352 phospholipase D epsilon
Probab=96.20 E-value=0.042 Score=61.69 Aligned_cols=158 Identities=15% Similarity=0.123 Sum_probs=100.2
Q ss_pred EEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEeccccccccc-eeEE
Q 010107 14 VEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKN-RSLT 92 (518)
Q Consensus 14 ~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~~~~-~~~~ 92 (518)
..|+|| .+.-||+|+|.|.+..-=.....+.|.|-| + ..+||.+.+++.+|+.... ..-|
T Consensus 47 ~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--~--------------~~~ig~~~~p~~~~~~g~~~~~~~ 107 (758)
T PLN02352 47 KKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT--K--------------CSILGRFHIQAHQIVTEASFINGF 107 (758)
T ss_pred cEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--C--------------CeEEEEEEEEHHHhhCCCcccceE
Confidence 369999 677799999999988642222468888877 2 5789999999999987644 6779
Q ss_pred EeccCCcccccccccCCCCCCCCcccceeeeeceeeecCCceEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEe
Q 010107 93 LDLVRREETITPITEESNPSNRPKHCGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVC 172 (518)
Q Consensus 93 ~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~~~~~~~li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~ 172 (518)
+++.+. .+ ++....+|++++.+.+..... .-++.+...+..|-...|+.... |..+..|
T Consensus 108 ~~~~~~-----------~~--~p~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~gvp~~~f~~r~----g~~v~ly 166 (758)
T PLN02352 108 FPLIME-----------NG--KPNPELKLRFMLWFRPAELEP----TWCKILENGSFQGLRNATFPQRS----NCHVILY 166 (758)
T ss_pred EEcccC-----------CC--CCCCCCEEEEEEEEEEhhhCc----chhhcccCCCcCCcCCcccccCC----CCEEEEE
Confidence 998652 21 112126888988887643321 12333333345565555655432 4467788
Q ss_pred eeccccCCCCCceee-------eEEeeeccCCCCccEEEEEEeecC
Q 010107 173 KTEVLKNETKPTWKS-------VFLNIQQVGSKDSPLIIECFNFNS 211 (518)
Q Consensus 173 kTevik~tlnP~W~e-------f~~~~~~l~~~~~~L~veV~D~d~ 211 (518)
+-.-+..+.-|.-.- |.--...+......|.|.-|+.+.
T Consensus 167 qdah~~~~~~p~i~l~~~~~~~f~al~eAI~~Ar~sI~I~gW~~d~ 212 (758)
T PLN02352 167 QDAHHCSTFQPPVDLCGSPRKLWEDVYKAIEGAKHLIYIAGWSFNP 212 (758)
T ss_pred ecCCCccccCCcceeecCHHHHHHHHHHHHHhhccEEEEEEEEecC
Confidence 888887776664321 000011112245678899999875
No 279
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=96.11 E-value=0.013 Score=66.15 Aligned_cols=70 Identities=27% Similarity=0.325 Sum_probs=50.6
Q ss_pred EEeeeeeeCCCCCceeeEEEEEE---E------eCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEeccccccc
Q 010107 16 VGRTEVVLNSLNPTWITKHIITY---Q------FEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTR 86 (518)
Q Consensus 16 v~rTevi~~~lNP~f~~~f~~~~---~------fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~~ 86 (518)
--.|+++++||||.|+.+..++- + ......+.|+|||.|.. +.++|+|.+.+...=++ +
T Consensus 239 s~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~-----------g~~ef~gr~~~~p~V~~-~ 306 (1105)
T KOG1326|consen 239 SKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRS-----------GINEFKGRKKQRPYVMV-Q 306 (1105)
T ss_pred cceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhhh-----------chHHhhcccccceEEEe-c
Confidence 45799999999999999887652 1 11223678999999953 78999999877644333 3
Q ss_pred cceeEEEeccC
Q 010107 87 KNRSLTLDLVR 97 (518)
Q Consensus 87 ~~~~~~~~L~~ 97 (518)
++.-.|.++..
T Consensus 307 ~p~lkw~p~~r 317 (1105)
T KOG1326|consen 307 CPALKWVPTMR 317 (1105)
T ss_pred CCccceEEeec
Confidence 56667777643
No 280
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=96.10 E-value=0.071 Score=50.34 Aligned_cols=158 Identities=11% Similarity=0.089 Sum_probs=81.8
Q ss_pred eEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEecCCCCCCC
Q 010107 282 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYC 361 (518)
Q Consensus 282 ~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~~ 361 (518)
++++|+|.|+|=- .+.+.++++-.-..|...+.+.+..|.......-.||++..+. .||. . ...|
T Consensus 2 ~l~lavDlSgSM~--------~~~~~dg~~~~RL~a~k~v~~~f~~f~~~r~~DriG~~g~~~~----~~~l-t--~d~p 66 (191)
T cd01455 2 RLKLVVDVSGSMY--------RFNGYDGRLDRSLEAVVMVMEAFDGFEDKIQYDIIGHSGDGPC----VPFV-K--TNHP 66 (191)
T ss_pred ceEEEEECcHhHH--------HHhccCCccccHHHHHHHHHHHHHHHHHhCccceeeecCcccc----cCcc-c--cccC
Confidence 5899999999721 1111223343444555555555555556666777888876321 1111 0 1111
Q ss_pred cccChH--HHHHHHHhhhccceecCCCChHHHHHHHHHHHH-hhhcccCCceEEEEEEeCCCcCCHH-HHHH-HHHHccC
Q 010107 362 EVEGIP--GIMMAYTSALHNVNLAGPTLFGPVISNAALIAG-QSLANHGQKYFVLLIITDGVVTDLQ-ETKD-ALVKASD 436 (518)
Q Consensus 362 ~~~g~~--~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~-~~~~~~~~~y~vlliltdG~i~d~~-~t~~-~i~~as~ 436 (518)
.-...+ .++...-.-+ .+.+.|+..- ..|..+++.-+ ++. ..--|++.||||..+.-. .-.+ +-.-|..
T Consensus 67 ~t~d~~~~~~l~~~l~~~-q~g~ag~~Ta-dAi~~av~rl~~~~~----a~~kvvILLTDG~n~~~~i~P~~aAa~lA~~ 140 (191)
T cd01455 67 PKNNKERLETLKMMHAHS-QFCWSGDHTV-EATEFAIKELAAKED----FDEAIVIVLSDANLERYGIQPKKLADALARE 140 (191)
T ss_pred cccchhHHHHHHHHHHhc-ccCccCccHH-HHHHHHHHHHHhcCc----CCCcEEEEEeCCCcCCCCCChHHHHHHHHHh
Confidence 112122 2333222222 2345676333 66666665544 331 223488999999863222 3333 2334556
Q ss_pred CCeEEEEEecCCCcchhhhhcccC
Q 010107 437 LPLSILIIGVGGADFKEMEILDAD 460 (518)
Q Consensus 437 lPlsiiiVGvG~~~f~~m~~ld~d 460 (518)
.-+=|--||||..+...++.+-..
T Consensus 141 ~gV~iytIgiG~~d~~~l~~iA~~ 164 (191)
T cd01455 141 PNVNAFVIFIGSLSDEADQLQREL 164 (191)
T ss_pred CCCEEEEEEecCCCHHHHHHHHhC
Confidence 677777778887666666665533
No 281
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=0.057 Score=58.33 Aligned_cols=115 Identities=11% Similarity=0.176 Sum_probs=82.8
Q ss_pred cccceeeeeceeeecCC---ceEEE-EEeecCCCcCCCCCCCCcEEEEEEEecC-CceeeEeeeccccCCCCCceee-eE
Q 010107 116 KHCGKLTVHAEECINSK---TTTEL-ILRCSDLDCKDLFSRNDPFLVISKIVES-GTHIPVCKTEVLKNETKPTWKS-VF 189 (518)
Q Consensus 116 ~~~G~I~i~~e~~~~~~---~li~~-~i~a~~L~~~d~~g~sDPyv~i~~~~~~-~~~~~~~kTevik~tlnP~W~e-f~ 189 (518)
...|++.+..+.....+ ..+.+ ++.|.+|+ ....|.--||+++.+.++. +.+...+.|+...++-.|.+|| |.
T Consensus 1105 dpvgevsvqvdlfthpgtgehkvtvkvvaandlk-wqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~ 1183 (1283)
T KOG1011|consen 1105 DPVGEVSVQVDLFTHPGTGEHKVTVKVVAANDLK-WQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFH 1183 (1283)
T ss_pred CCCceEEEEEEeecCCCCCcceEEEEEEeccccc-chhccccccceEEEEecCcccchhhhccccccCCCcCcccCceeE
Confidence 44688888777654322 23333 46666665 2345666799999998653 4456778899999999999999 66
Q ss_pred Eeeecc-CCCCccEEEEEEeecCCCCCcceEEEEEechhhhhc
Q 010107 190 LNIQQV-GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKL 231 (518)
Q Consensus 190 ~~~~~l-~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~ 231 (518)
|.+..- ++....|.+.|-||--...+..+|-+.+.|.++...
T Consensus 1184 f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~k 1226 (1283)
T KOG1011|consen 1184 FFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVADK 1226 (1283)
T ss_pred EEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHhhc
Confidence 555433 344667999999988766788999999999999863
No 282
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=95.58 E-value=0.21 Score=57.47 Aligned_cols=156 Identities=16% Similarity=0.089 Sum_probs=92.2
Q ss_pred hhcccCceeeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEE
Q 010107 273 DYLAGGFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCF 352 (518)
Q Consensus 273 dyi~~g~~~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~d~~~~~~gFG~~~~~~~~~~~f 352 (518)
.+++.... .++++||.|+| |....+.+.-++|+..... +.+.++-++-++.|+..+. -..
T Consensus 298 s~lq~~~r-~VVLVLDvSGS------------M~g~dRL~~lkqAA~~fL~--~~l~~~DrVGLVtFsssA~-----vl~ 357 (863)
T TIGR00868 298 SLLKIRQR-IVCLVLDKSGS------------MTVEDRLKRMNQAAKLFLL--QTVEKGSWVGMVTFDSAAY-----IKN 357 (863)
T ss_pred eecccCCc-eEEEEEECCcc------------ccccCHHHHHHHHHHHHHH--HhCCCCCEEEEEEECCcee-----Eee
Confidence 34444443 38899999997 5432134555566554422 2234455799999998621 012
Q ss_pred ecCCCCCCCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcCCHHHHHHHHH
Q 010107 353 NLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALV 432 (518)
Q Consensus 353 ~l~~~~~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~ 432 (518)
+|.- +.. ....++-...++ ....|.|++..-|..|.+..++... ...-..+++||||+-++..+..+.+
T Consensus 358 pLt~------Its-~~dr~aL~~~L~-~~A~GGT~I~~GL~~Alq~L~~~~~--~~~~~~IILLTDGedn~~~~~l~~l- 426 (863)
T TIGR00868 358 ELIQ------ITS-SAERDALTANLP-TAASGGTSICSGLKAAFQVIKKSYQ--STDGSEIVLLTDGEDNTISSCFEEV- 426 (863)
T ss_pred cccc------CCc-HHHHHHHHHhhc-cccCCCCcHHHHHHHHHHHHHhccc--ccCCCEEEEEeCCCCCCHHHHHHHH-
Confidence 2210 000 112222223343 3467999999999999987765421 1122467888999987665555444
Q ss_pred HccCCCeEEEEEecCCCcchhhhhcccCC
Q 010107 433 KASDLPLSILIIGVGGADFKEMEILDADK 461 (518)
Q Consensus 433 ~as~lPlsiiiVGvG~~~f~~m~~ld~d~ 461 (518)
...++.|--||+|.+.=..|++|-...
T Consensus 427 --k~~gVtI~TIg~G~dad~~L~~IA~~T 453 (863)
T TIGR00868 427 --KQSGAIIHTIALGPSAAKELEELSDMT 453 (863)
T ss_pred --HHcCCEEEEEEeCCChHHHHHHHHHhc
Confidence 345788888899987656677776443
No 283
>PRK10997 yieM hypothetical protein; Provisional
Probab=95.57 E-value=0.21 Score=53.90 Aligned_cols=143 Identities=14% Similarity=0.121 Sum_probs=84.2
Q ss_pred ceeeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHH-HHHHhhhcccccCCCCcceeeecccCCCCCceeEEecCCC
Q 010107 279 FELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRA-ILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGS 357 (518)
Q Consensus 279 ~~~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~a-i~~i~~i~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~ 357 (518)
..-.++|++|.|+| |+. ..-.|..| ..+++.++..-+ ..+-++.|+... .++++.
T Consensus 322 ~kGpiII~VDtSGS------------M~G--~ke~~AkalAaAL~~iAl~q~--dr~~li~Fs~~i------~~~~l~-- 377 (487)
T PRK10997 322 PRGPFIVCVDTSGS------------MGG--FNEQCAKAFCLALMRIALAEN--RRCYIMLFSTEV------VTYELT-- 377 (487)
T ss_pred CCCcEEEEEECCCC------------CCC--CHHHHHHHHHHHHHHHHHhcC--CCEEEEEecCCc------eeeccC--
Confidence 34679999999997 441 23456555 344444443332 236788898751 122332
Q ss_pred CCCCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcCC-HHHHHHHHHHccC
Q 010107 358 NSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTD-LQETKDALVKASD 436 (518)
Q Consensus 358 ~~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~d-~~~t~~~i~~as~ 436 (518)
.-.|+..+++.-.. .+.|.|++++.++.+++..++. .-.=..++||||+.... .++..+.|...-.
T Consensus 378 ----~~~gl~~ll~fL~~-----~f~GGTDl~~aL~~al~~l~~~----~~r~adIVVISDF~~~~~~eel~~~L~~Lk~ 444 (487)
T PRK10997 378 ----GPDGLEQAIRFLSQ-----SFRGGTDLAPCLRAIIEKMQGR----EWFDADAVVISDFIAQRLPDELVAKVKELQR 444 (487)
T ss_pred ----CccCHHHHHHHHHH-----hcCCCCcHHHHHHHHHHHHccc----ccCCceEEEECCCCCCCChHHHHHHHHHHHH
Confidence 23567776664432 3589999999999998877642 12335689999996644 2445555544332
Q ss_pred -CCeEEEEEecCC-Ccchhhhhcc
Q 010107 437 -LPLSILIIGVGG-ADFKEMEILD 458 (518)
Q Consensus 437 -lPlsiiiVGvG~-~~f~~m~~ld 458 (518)
.-..+.=|-||+ ++=+-|+.+|
T Consensus 445 ~~~~rf~~l~i~~~~~p~l~~ifD 468 (487)
T PRK10997 445 QHQHRFHAVAMSAHGKPGIMRIFD 468 (487)
T ss_pred hcCcEEEEEEeCCCCCchHHHhcC
Confidence 344444444444 3334466666
No 284
>PLN02352 phospholipase D epsilon
Probab=95.41 E-value=0.1 Score=58.73 Aligned_cols=77 Identities=17% Similarity=0.183 Sum_probs=59.4
Q ss_pred CcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCCCCCcceEEEEEechhhhhcc
Q 010107 154 DPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLH 232 (518)
Q Consensus 154 DPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~~ 232 (518)
|||+.+.+.. ..+.|| .+.-||+|+| |.+++... .+..+.|.|.| ...+||.+.++..+|....
T Consensus 37 ~~y~tv~~~~-----~~v~rt---~~~~~p~w~e~f~i~~ah~--~~~~~~f~vk~-----~~~~ig~~~~p~~~~~~g~ 101 (758)
T PLN02352 37 ATYVTIKIGN-----KKVAKT---SHEYDRVWNQTFQILCAHP--LDSTITITLKT-----KCSILGRFHIQAHQIVTEA 101 (758)
T ss_pred CceEEEEeCC-----cEEecC---CCCCCCccccceeEEeeee--cCCcEEEEEec-----CCeEEEEEEEEHHHhhCCC
Confidence 9999999853 467888 5567999999 77777543 13579999988 3689999999999997532
Q ss_pred C-CCceEEeecccc
Q 010107 233 S-SGQGQNLFLSTA 245 (518)
Q Consensus 233 ~-~~~~~~l~n~~~ 245 (518)
. ...++++++..+
T Consensus 102 ~~~~~~~~~~~~~~ 115 (758)
T PLN02352 102 SFINGFFPLIMENG 115 (758)
T ss_pred cccceEEEcccCCC
Confidence 3 456889988664
No 285
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=94.47 E-value=0.06 Score=55.54 Aligned_cols=73 Identities=12% Similarity=0.075 Sum_probs=57.9
Q ss_pred EEEeeeeeeCCCCCceeeEEEEEEEeCc-----------eeEEEEEEEEecCCcccccccccCccCcceeEEEEEecccc
Q 010107 15 EVGRTEVVLNSLNPTWITKHIITYQFEV-----------VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQI 83 (518)
Q Consensus 15 ev~rTevi~~~lNP~f~~~f~~~~~fe~-----------~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l 83 (518)
+-++|.||++|-.|+|.+.|.++..-.. ...++|+||..-+. +.+|.++|.|.++|.-|
T Consensus 404 qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf----------~rSdkl~gt~nikle~L 473 (523)
T KOG3837|consen 404 QKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGF----------NRSDKLTGTGNIKLEIL 473 (523)
T ss_pred ccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeecccc----------ccccceeceeeeeehhh
Confidence 5689999999999999999999875311 12689999998763 57899999999999988
Q ss_pred ccccceeEEEeccC
Q 010107 84 VTRKNRSLTLDLVR 97 (518)
Q Consensus 84 ~~~~~~~~~~~L~~ 97 (518)
...-.-...++|.+
T Consensus 474 en~cei~e~~~l~D 487 (523)
T KOG3837|consen 474 ENMCEICEYLPLKD 487 (523)
T ss_pred hcccchhhceeccc
Confidence 76654555677755
No 286
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=94.28 E-value=0.18 Score=48.93 Aligned_cols=119 Identities=15% Similarity=0.229 Sum_probs=69.9
Q ss_pred ceeeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhh-hcccccCCCCcceeeecccCCCCCceeEEecCCC
Q 010107 279 FELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGE-VLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGS 357 (518)
Q Consensus 279 ~~~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~-i~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~ 357 (518)
-...+++.+|.|+| |. .|...+..+.. +...+. .+.+|-|+..... +.+.+ .
T Consensus 56 ~~~~lvvl~DvSGS------------M~------~~s~~~l~~~~~l~~~~~---~~~~f~F~~~l~~--vT~~l--~-- 108 (222)
T PF05762_consen 56 KPRRLVVLCDVSGS------------MA------GYSEFMLAFLYALQRQFR---RVRVFVFSTRLTE--VTPLL--R-- 108 (222)
T ss_pred CCccEEEEEeCCCC------------hH------HHHHHHHHHHHHHHHhCC---CEEEEEEeeehhh--hhhhh--c--
Confidence 33589999999997 54 23333333333 233332 6889999976211 10011 1
Q ss_pred CCCCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCC-CcCCHHHHHHHHHHcc
Q 010107 358 NSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDG-VVTDLQETKDALVKAS 435 (518)
Q Consensus 358 ~~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG-~i~d~~~t~~~i~~as 435 (518)
. .+..+.+....... ..++|.|+++..++++.+..... . -.-+++|||||| +..+.++..+.+.+..
T Consensus 109 ~-----~~~~~~l~~~~~~~--~~~~GgTdi~~aL~~~~~~~~~~---~-~~~t~vvIiSDg~~~~~~~~~~~~l~~l~ 176 (222)
T PF05762_consen 109 R-----RDPEEALARLSALV--QSFGGGTDIGQALREFLRQYARP---D-LRRTTVVIISDGWDTNDPEPLAEELRRLR 176 (222)
T ss_pred c-----CCHHHHHHHHHhhc--cCCCCccHHHHHHHHHHHHhhcc---c-ccCcEEEEEecccccCChHHHHHHHHHHH
Confidence 0 12223333222222 22899999999999998876532 1 157889999999 6666666665555444
No 287
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=94.27 E-value=0.027 Score=60.06 Aligned_cols=59 Identities=25% Similarity=0.374 Sum_probs=49.6
Q ss_pred EEeeeeeeCCCCCceee-EEEEEEEeCcee--EEEEEEEEecCCcccccccccCccCcceeEEEEEecccccc
Q 010107 16 VGRTEVVLNSLNPTWIT-KHIITYQFEVVQ--TLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVT 85 (518)
Q Consensus 16 v~rTevi~~~lNP~f~~-~f~~~~~fe~~q--~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~ 85 (518)
-.||.|-.++|||.|+. -|.|++..++.| +|.+.+.|.|.. +..|-||.+.+++.-|+-
T Consensus 37 t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty-----------sandaigkv~i~idpl~~ 98 (1169)
T KOG1031|consen 37 TFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY-----------SANDAIGKVNIDIDPLCL 98 (1169)
T ss_pred ceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc-----------ccccccceeeeccChHHH
Confidence 36899999999999996 477777766666 899999999975 468999999999988753
No 288
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=93.84 E-value=0.032 Score=64.06 Aligned_cols=73 Identities=23% Similarity=0.276 Sum_probs=59.8
Q ss_pred EEEEeeeeeeCCCCCceeeEEEEE-EEeCcee--EEEEEEEEecCCcccccccccCccCcceeEEEEEecccccccccee
Q 010107 14 VEVGRTEVVLNSLNPTWITKHIIT-YQFEVVQ--TLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRS 90 (518)
Q Consensus 14 ~ev~rTevi~~~lNP~f~~~f~~~-~~fe~~q--~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~~~~~~ 90 (518)
+-..||+|+++|.||.|+|.+.+. |.-|..| .|.+.||..++ +....|||.+.++|.++.-.+...
T Consensus 1560 ~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~-----------~~en~~lg~v~i~L~~~~l~kE~~ 1628 (1639)
T KOG0905|consen 1560 TSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGG-----------LLENVFLGGVNIPLLKVDLLKESV 1628 (1639)
T ss_pred hhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccc-----------eeeeeeeeeeecchhhcchhhhhc
Confidence 456799999999999999998776 5555444 89999999885 467999999999999988776667
Q ss_pred EEEeccC
Q 010107 91 LTLDLVR 97 (518)
Q Consensus 91 ~~~~L~~ 97 (518)
-|+.|..
T Consensus 1629 ~Wy~lg~ 1635 (1639)
T KOG0905|consen 1629 GWYNLGA 1635 (1639)
T ss_pred ceeeccc
Confidence 7888843
No 289
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.69 E-value=0.21 Score=45.97 Aligned_cols=76 Identities=18% Similarity=0.308 Sum_probs=50.7
Q ss_pred CCCCcEEEEEEEecCCcee-eEeeeccccCCCCCceee-eEEe--eeccCCCCccEEEEEEeecCCCCCcceEEEEEech
Q 010107 151 SRNDPFLVISKIVESGTHI-PVCKTEVLKNETKPTWKS-VFLN--IQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLA 226 (518)
Q Consensus 151 g~sDPyv~i~~~~~~~~~~-~~~kTevik~tlnP~W~e-f~~~--~~~l~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~ 226 (518)
..+|-|+.+.+... ++.. ..-+|..+.-+..+.||| +.|+ +..| +.+..|.|.|||++..++...+|.++++|-
T Consensus 28 ~~~~l~V~~~l~~~-~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dL-P~~a~L~iti~~~~~~~~~~~vg~~~~~lF 105 (159)
T cd08397 28 PNSDLFVTCQVFDD-GKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDL-PRNSQLAITIWDVSGTGKAVPFGGTTLSLF 105 (159)
T ss_pred CCCCEEEEEEEEEC-CEeccCcEEccccCCCCCcccceeEEcccchhcC-ChhheEEEEEEEecCCCCceEEEEEEEeeE
Confidence 34677888776642 3222 123555555556788999 4444 4444 457889999999987667789999988875
Q ss_pred hh
Q 010107 227 DL 228 (518)
Q Consensus 227 ~L 228 (518)
+-
T Consensus 106 d~ 107 (159)
T cd08397 106 NK 107 (159)
T ss_pred CC
Confidence 54
No 290
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=91.97 E-value=0.37 Score=42.37 Aligned_cols=80 Identities=14% Similarity=0.240 Sum_probs=57.0
Q ss_pred EEEeeeeeeCCCCCceeeEEEEEEE----eCc-----------eeEEEEEEEEecCCcccccccccCccCcceeEEEEEe
Q 010107 15 EVGRTEVVLNSLNPTWITKHIITYQ----FEV-----------VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCT 79 (518)
Q Consensus 15 ev~rTevi~~~lNP~f~~~f~~~~~----fe~-----------~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~ 79 (518)
|..+|.++.++.-|.|+..++|... ... ...+.|+||..+..+.. +.....-.+|-.||.+.++
T Consensus 48 e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~-~~~~~~~~~DilLG~v~IP 126 (143)
T cd08683 48 ELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAG-DTIKIETSGDILLGTVKIP 126 (143)
T ss_pred ceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCcccc-ceeccCcCCcEEEEEEEee
Confidence 6889999999999999999988743 221 23789999998865321 0001123468899999999
Q ss_pred cccccccc-ceeEEEec
Q 010107 80 LSQIVTRK-NRSLTLDL 95 (518)
Q Consensus 80 L~~l~~~~-~~~~~~~L 95 (518)
+.+|+..+ |-+-|+|+
T Consensus 127 l~~Ll~~rsGitGW~pi 143 (143)
T cd08683 127 LRDLLTKRSGITGWYPI 143 (143)
T ss_pred HHHHhhcccCccccccC
Confidence 99998654 55556653
No 291
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=91.35 E-value=0.062 Score=43.91 Aligned_cols=57 Identities=18% Similarity=0.293 Sum_probs=45.6
Q ss_pred EEeeeeeeCCCCCceeeEEEEEEEeCcee--EEEEEEEEecCCcccccccccCccCcceeEEEEEecccccc
Q 010107 16 VGRTEVVLNSLNPTWITKHIITYQFEVVQ--TLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVT 85 (518)
Q Consensus 16 v~rTevi~~~lNP~f~~~f~~~~~fe~~q--~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~ 85 (518)
-.||.+.....||+|.|+|.|.......| +|-|.||. . ..+...||.|.+.|.++-.
T Consensus 36 ~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~-----------~~RKe~iG~~sL~l~s~ge 94 (103)
T cd08684 36 HFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--Q-----------TPRKRTIGECSLSLRTLST 94 (103)
T ss_pred cccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--c-----------CCccceeeEEEeecccCCH
Confidence 46888889999999999999887655565 67788887 2 2478999999999887743
No 292
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=91.21 E-value=1.4 Score=48.21 Aligned_cols=154 Identities=19% Similarity=0.242 Sum_probs=88.1
Q ss_pred cCceeeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHH-HHHHHhhhcccccCCCCcceeeecccCCCCCcee-EEec
Q 010107 277 GGFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQR-AILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSH-CFNL 354 (518)
Q Consensus 277 ~g~~~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~-ai~~i~~i~~~yd~d~~~~~~gFG~~~~~~~~~~-~f~l 354 (518)
......|.+-||+|+| |. . ++-..-. +.-.+++.|+.-. =.+.++||-....++..+. -+--
T Consensus 389 ~~~D~~V~LLID~SGS------------M~-~-r~~~vA~~~a~iLa~aL~~~g--Ip~eVlGFtt~aw~gg~~re~w~~ 452 (600)
T TIGR01651 389 EFRDTVVTLLIDNSGS------------MR-G-RPITVAATCADILARTLERCG--VKVEILGFTTRAWKGGQSREKWLK 452 (600)
T ss_pred CCCCcEEEEEEECCcc------------CC-C-CHHHHHHHHHHHHHHHHHHCC--CCeEEEeecccccccccchHHHHh
Confidence 3455788999999997 44 1 2333332 4566777777554 2366899976544433222 1222
Q ss_pred CCCCCCCcccC-hHHHHHHHHhhhccceecCCCChHHHH----------HHHHHHHHhhhcccCCceEEEEEEeCCCcCC
Q 010107 355 NGSNSYCEVEG-IPGIMMAYTSALHNVNLAGPTLFGPVI----------SNAALIAGQSLANHGQKYFVLLIITDGVVTD 423 (518)
Q Consensus 355 ~~~~~~~~~~g-~~~i~~~Y~~~~~~~~~~gpt~f~pvi----------~~~~~~a~~~~~~~~~~y~vlliltdG~i~d 423 (518)
.|.|..|.-.+ +..++ |+.+..... ....+.+-++ -.|+++|..........=-||++|+||...|
T Consensus 453 ~g~p~~PgRlN~l~hii--yk~ad~~wr-~~r~~l~~mm~~~~~~eN~DGeAl~wa~~rL~~R~e~rKiL~ViSDG~P~D 529 (600)
T TIGR01651 453 AGKPAAPGRLNDLRHII--YKSADAPWR-RARRNLGLMMREGLLKENIDGEALMWAHQRLIARPEQRRILMMISDGAPVD 529 (600)
T ss_pred cCCCCCCcccchhhhhh--hhccccchh-hhccchhhhhhccccccCCchHHHHHHHHHHhcCcccceEEEEEeCCCcCC
Confidence 35555553222 33444 554433211 1223444444 3566666655444556677999999999876
Q ss_pred HHH------------HHHHHHHccCC-CeEEEEEecCCC
Q 010107 424 LQE------------TKDALVKASDL-PLSILIIGVGGA 449 (518)
Q Consensus 424 ~~~------------t~~~i~~as~l-PlsiiiVGvG~~ 449 (518)
-.- ..+.|.....- |+-++-||||..
T Consensus 530 ~~TlsvN~~~~l~~hLr~vi~~~e~~~~vel~aigIg~D 568 (600)
T TIGR01651 530 DSTLSVNPGNYLERHLRAVIEEIETRSPVELLAIGIGHD 568 (600)
T ss_pred ccccccCchhHHHHHHHHHHHHHhccCCceEEEeecccc
Confidence 221 44445555554 899999999984
No 293
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=90.80 E-value=0.55 Score=38.51 Aligned_cols=86 Identities=14% Similarity=0.217 Sum_probs=56.6
Q ss_pred EEEeecCCCcCCCCCC-CCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eE--EeeeccCCCCccEEEEEEeecCC
Q 010107 137 LILRCSDLDCKDLFSR-NDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VF--LNIQQVGSKDSPLIIECFNFNSN 212 (518)
Q Consensus 137 ~~i~a~~L~~~d~~g~-sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~--~~~~~l~~~~~~L~veV~D~d~~ 212 (518)
.++.|++|.=....|. ..-|++--+.-+ +-...||.+.+...||.|+| |- +.+..|. +-.|.|.|+. ..
T Consensus 4 tv~~c~d~s~~~~~~e~~~i~ikg~~tl~---kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~--~V~L~fsv~~--~~ 76 (103)
T cd08684 4 TVLKCKDLSWPSSCGENPTIYIKGILTLP---KPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQ--TVRLVFKIQT--QT 76 (103)
T ss_pred EEEEecccccccccCcCCeeEEEEEEecC---CCccccchhhcCCCChhHHHHHHHHHHHhhcc--ceEEEEEeec--cC
Confidence 3567777754333332 223555433221 12357999999999999999 43 3444443 5679999988 45
Q ss_pred CCCcceEEEEEechhhh
Q 010107 213 GKHDLIGKVQKSLADLE 229 (518)
Q Consensus 213 ~~~d~IG~~~i~l~~L~ 229 (518)
.+.+.||.|.++++++-
T Consensus 77 ~RKe~iG~~sL~l~s~g 93 (103)
T cd08684 77 PRKRTIGECSLSLRTLS 93 (103)
T ss_pred CccceeeEEEeecccCC
Confidence 67789999999999883
No 294
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=90.58 E-value=3.9 Score=40.25 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=98.9
Q ss_pred hhhhcccCce-eeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhc-ccccCCCCcceeeecccCCCCCc
Q 010107 271 FLDYLAGGFE-LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVL-QVYDSDKRFPAWGFGARPIDGPV 348 (518)
Q Consensus 271 Fldyi~~g~~-~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~-~~yd~d~~~~~~gFG~~~~~~~~ 348 (518)
+-..++-|-. .-+++++|-|+| |... ..-+.|=-++...| ..|-.--++.+.+|-+.-. ++
T Consensus 68 lr~~~r~~r~g~lvvfvVDASgS------------M~~~---~Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~~A--~l 130 (261)
T COG1240 68 LREKIREGRAGNLIVFVVDASGS------------MAAR---RRMAAAKGAALSLLRDAYQRRDKVAVIAFRGEKA--EL 130 (261)
T ss_pred HHHHHhccCcCCcEEEEEeCccc------------chhH---HHHHHHHHHHHHHHHHHHHccceEEEEEecCCcc--eE
Confidence 3444555544 667889999997 5422 23333333333333 4566666799999976410 00
Q ss_pred eeEEecCCCCCCCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcC-----C
Q 010107 349 SHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVT-----D 423 (518)
Q Consensus 349 ~~~f~l~~~~~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~-----d 423 (518)
.-| ++ .. ++.-.+.|+.+...|-|-+++-|..+.+...+....+...=.++++||||..+ +
T Consensus 131 --ll~----pT----~s----v~~~~~~L~~l~~GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~ 196 (261)
T COG1240 131 --LLP----PT----SS----VELAERALERLPTGGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLG 196 (261)
T ss_pred --EeC----Cc----cc----HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCc
Confidence 011 00 01 12234667777789999999999999998887754455567888999999753 3
Q ss_pred -HHHHHHHHHHccCCCeEEEEEecCCCc--chhhhhcc
Q 010107 424 -LQETKDALVKASDLPLSILIIGVGGAD--FKEMEILD 458 (518)
Q Consensus 424 -~~~t~~~i~~as~lPlsiiiVGvG~~~--f~~m~~ld 458 (518)
..++..+-..+...++-+++|...... .+.-++|-
T Consensus 197 ~~~e~~~~a~~~~~~g~~~lvid~e~~~~~~g~~~~iA 234 (261)
T COG1240 197 PKAETLEAASKLRLRGIQLLVIDTEGSEVRLGLAEEIA 234 (261)
T ss_pred hHHHHHHHHHHHhhcCCcEEEEecCCccccccHHHHHH
Confidence 467777777777788888888876654 33334444
No 295
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=90.57 E-value=2.1 Score=45.62 Aligned_cols=133 Identities=19% Similarity=0.203 Sum_probs=80.9
Q ss_pred cCceeeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHH-HHHhhhcccccCCCCcceeeecccCCCCCceeEEecC
Q 010107 277 GGFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAI-LEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLN 355 (518)
Q Consensus 277 ~g~~~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai-~~i~~i~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~ 355 (518)
|+..=-+++.+|-|+| |+.. +-+..+|+ .++.+++..=+ +.+-++-|-..... ..+
T Consensus 269 gk~~GpvilllD~SGS------------M~G~--~e~~AKAvalAl~~~alaen--R~~~~~lF~s~~~~------~el- 325 (437)
T COG2425 269 GKSEGPVILLLDKSGS------------MSGF--KEQWAKAVALALMRIALAEN--RDCYVILFDSEVIE------YEL- 325 (437)
T ss_pred cCCCCCEEEEEeCCCC------------cCCc--HHHHHHHHHHHHHHHHHHhc--cceEEEEeccccee------eee-
Confidence 3344568999999996 5522 23333332 34444444433 44778888663111 122
Q ss_pred CCCCCCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcC---CHHHHHHHHH
Q 010107 356 GSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVT---DLQETKDALV 432 (518)
Q Consensus 356 ~~~~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~---d~~~t~~~i~ 432 (518)
++...+++++++-- .. .+.|.|+|++.|..|++.+++.. -.+ .=+++||||+-. |.-..++.+.
T Consensus 326 ----~~k~~~~~e~i~fL----~~-~f~GGTD~~~~l~~al~~~k~~~---~~~-adiv~ITDg~~~~~~~~~~~v~e~~ 392 (437)
T COG2425 326 ----YEKKIDIEELIEFL----SY-VFGGGTDITKALRSALEDLKSRE---LFK-ADIVVITDGEDERLDDFLRKVKELK 392 (437)
T ss_pred ----cCCccCHHHHHHHH----hh-hcCCCCChHHHHHHHHHHhhccc---ccC-CCEEEEeccHhhhhhHHHHHHHHHH
Confidence 34566888888732 22 24455999999999999988642 122 457999999642 4456666677
Q ss_pred HccCCCeEEEEEe
Q 010107 433 KASDLPLSILIIG 445 (518)
Q Consensus 433 ~as~lPlsiiiVG 445 (518)
++++.=+--|+||
T Consensus 393 k~~~~rl~aV~I~ 405 (437)
T COG2425 393 KRRNARLHAVLIG 405 (437)
T ss_pred HHhhceEEEEEec
Confidence 6776655555544
No 296
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=89.26 E-value=1.4 Score=38.85 Aligned_cols=75 Identities=20% Similarity=0.320 Sum_probs=53.6
Q ss_pred CcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeecc-----CC--------CCccEEEEEEeecCC-------
Q 010107 154 DPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV-----GS--------KDSPLIIECFNFNSN------- 212 (518)
Q Consensus 154 DPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l-----~~--------~~~~L~veV~D~d~~------- 212 (518)
++|+.+.+..=+ ....++|+++.++--|.|+. ++|+.... +. ....+.++||.....
T Consensus 34 N~yv~i~lSFl~--~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~ 111 (143)
T cd08683 34 NSYVTIHLSFLP--EKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIK 111 (143)
T ss_pred ceEEEEEeccCC--CCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceec
Confidence 689998754311 13478999999999999997 55555422 11 246789999986543
Q ss_pred ---CCCcceEEEEEechhhhh
Q 010107 213 ---GKHDLIGKVQKSLADLEK 230 (518)
Q Consensus 213 ---~~~d~IG~~~i~l~~L~~ 230 (518)
.++-+||.+.+++.+|..
T Consensus 112 ~~~~~DilLG~v~IPl~~Ll~ 132 (143)
T cd08683 112 IETSGDILLGTVKIPLRDLLT 132 (143)
T ss_pred cCcCCcEEEEEEEeeHHHHhh
Confidence 234589999999999975
No 297
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=89.21 E-value=2.7 Score=38.59 Aligned_cols=89 Identities=12% Similarity=0.192 Sum_probs=53.3
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceee-EeeeccccCCCCCceee-eE--EeeeccCCCCccEEEEEEee
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIP-VCKTEVLKNETKPTWKS-VF--LNIQQVGSKDSPLIIECFNF 209 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~-~~kTevik~tlnP~W~e-f~--~~~~~l~~~~~~L~veV~D~ 209 (518)
+.+.+++++++.-. ..+|-|+++.+.. +++... -..|..+.. -++.||| +. +.+..| ..+..|.|.+|+.
T Consensus 10 ~~v~i~~~~~~~~~---~~~~l~V~v~l~~-g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dL-Pr~ArL~iti~~~ 83 (158)
T cd08398 10 LRIKILCATYVNVN---DIDKIYVRTGIYH-GGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDL-PRSARLCLSICSV 83 (158)
T ss_pred eEEEEEeeccCCCC---CcCeEEEEEEEEE-CCEEccCeeEecccCC-CCCccceeEEcccchhcC-ChhheEEEEEEEE
Confidence 33445666666543 2367888887764 232221 123333333 5799999 33 444444 3578899999998
Q ss_pred cCCC----CCcceEEEEEechhh
Q 010107 210 NSNG----KHDLIGKVQKSLADL 228 (518)
Q Consensus 210 d~~~----~~d~IG~~~i~l~~L 228 (518)
.... ....||.+.++|-+-
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC
Confidence 6532 235699988887654
No 298
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=89.11 E-value=1.5 Score=41.10 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=43.2
Q ss_pred cEEEEEeeeeeeCCCCCceeeEEEEEEEeCc--eeEEEEEEEEecCCcccccccccCccCcceeEEEEEeccccccc--c
Q 010107 12 ALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTR--K 87 (518)
Q Consensus 12 ~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~--~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~~--~ 87 (518)
.+.....|-|..++.+|.|++.|.+.+..+. ...|.|++|+.....+ -.+...+|.+-++|-+ -+. .
T Consensus 56 ~~~~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~--------~~~~~~~g~a~lpL~~-~g~~i~ 126 (184)
T PF14429_consen 56 SFVTSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKES--------KEKSKPFGYAFLPLMD-NGTIIQ 126 (184)
T ss_dssp S-BS-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSS--------S-SS-EEEEEEEESB--TS-B--
T ss_pred CcceEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccc--------cCccceeEEEEEEeee-CCeEec
Confidence 4667788999999999999999999887554 4599999999886410 0112799999999988 443 3
Q ss_pred ceeEEEec
Q 010107 88 NRSLTLDL 95 (518)
Q Consensus 88 ~~~~~~~L 95 (518)
.....+++
T Consensus 127 dg~~~L~v 134 (184)
T PF14429_consen 127 DGEHELPV 134 (184)
T ss_dssp SEEEEEEE
T ss_pred CCCEEEEE
Confidence 44555555
No 299
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=88.48 E-value=2 Score=38.50 Aligned_cols=73 Identities=19% Similarity=0.353 Sum_probs=47.5
Q ss_pred cEEEEEEEecCCcee--eEeeeccccCC-CCCceee---eEEeeeccCCCCccEEEEEEeecCCCCC----cceEEEEEe
Q 010107 155 PFLVISKIVESGTHI--PVCKTEVLKNE-TKPTWKS---VFLNIQQVGSKDSPLIIECFNFNSNGKH----DLIGKVQKS 224 (518)
Q Consensus 155 Pyv~i~~~~~~~~~~--~~~kTevik~t-lnP~W~e---f~~~~~~l~~~~~~L~veV~D~d~~~~~----d~IG~~~i~ 224 (518)
-|+.+.+.. +++.. ++..|....-+ .+|.|++ |.+.+..| +.+..|.|.||..+..... ..||.+.++
T Consensus 4 ~~V~~~ly~-g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~L-Pr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~ 81 (142)
T PF00792_consen 4 LYVECQLYH-GGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDL-PREARLCFTLYGVDSKKKSKKKKVPLGWVNLP 81 (142)
T ss_dssp EEEEEEEEE-TTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS--TTEEEEEEEEEEECSTTT--EEEEEEEEEEE
T ss_pred EEEEEEEEE-CCEEeecCeeeccccccccccceEeeEEEeecChHHC-ChhHeEEEEEEEecCCCccccceeEEEEEEEE
Confidence 355555553 23332 34567666666 8999998 44455555 4578899999998876655 699999999
Q ss_pred chhhh
Q 010107 225 LADLE 229 (518)
Q Consensus 225 l~~L~ 229 (518)
|-+..
T Consensus 82 lFd~~ 86 (142)
T PF00792_consen 82 LFDYR 86 (142)
T ss_dssp SB-TT
T ss_pred eECCC
Confidence 87763
No 300
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=88.25 E-value=1.7 Score=39.56 Aligned_cols=75 Identities=19% Similarity=0.302 Sum_probs=48.8
Q ss_pred CCCcEEEEEEEecCCce-eeEeeeccccCCCCCceee-eE--EeeeccCCCCccEEEEEEeecCCC--CCcceEEEEEec
Q 010107 152 RNDPFLVISKIVESGTH-IPVCKTEVLKNETKPTWKS-VF--LNIQQVGSKDSPLIIECFNFNSNG--KHDLIGKVQKSL 225 (518)
Q Consensus 152 ~sDPyv~i~~~~~~~~~-~~~~kTevik~tlnP~W~e-f~--~~~~~l~~~~~~L~veV~D~d~~~--~~d~IG~~~i~l 225 (518)
.++-|+.+.+.. +++. .....|.......++.|+| +. +.+..| ..+..|.|.+|+.+..+ ++..||.+.++|
T Consensus 27 ~~~l~V~~~l~~-g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~L-P~~arL~itl~~~~~~~~~~~~~iG~~~~~l 104 (156)
T cd08380 27 DLKLYVRVQLYH-GGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDL-PREARLCLSIYAVSEPGSKKEVPLGWVNVPL 104 (156)
T ss_pred ceeEEEEEEEEE-CCEEccCceeccCCcCCCCCcccceeEccchhhcC-ChhheEEEEEEEEecCCCCcceEEEEEeEEe
Confidence 355677776654 2322 2344555444446899999 33 334444 35778999999987654 467999999987
Q ss_pred hhh
Q 010107 226 ADL 228 (518)
Q Consensus 226 ~~L 228 (518)
-+-
T Consensus 105 Fd~ 107 (156)
T cd08380 105 FDY 107 (156)
T ss_pred Ecc
Confidence 664
No 301
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=87.92 E-value=0.91 Score=47.15 Aligned_cols=115 Identities=22% Similarity=0.161 Sum_probs=71.6
Q ss_pred EEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeecc-CC--------CCccEEEEEE
Q 010107 138 ILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV-GS--------KDSPLIIECF 207 (518)
Q Consensus 138 ~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l-~~--------~~~~L~veV~ 207 (518)
+++|.+++-...-.--|-|+++...-.+ ......+|.+++.|-.|.|.+ |.+.+..- +. ...-++|++|
T Consensus 373 ivrg~~~pvp~gp~hld~fvr~efpl~n-D~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeif 451 (523)
T KOG3837|consen 373 IVRGQKNPVPGGPMHLDQFVRLEFPLEN-DSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIF 451 (523)
T ss_pred HhhcccCCCCCCchhHHhhhcccccccc-cccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEe
Confidence 4567666542211123567766443221 134578999999999999999 76655431 10 1345899999
Q ss_pred eecCC-CCCcceEEEEEechhhhhccCCCceEEeecccccCCCCCccccceEEE
Q 010107 208 NFNSN-GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFV 260 (518)
Q Consensus 208 D~d~~-~~~d~IG~~~i~l~~L~~~~~~~~~~~l~n~~~~~k~~~k~~~G~i~l 260 (518)
..... .++.++|.+.+.+.-|...-..+..++|.+-. | -+.|.|.+
T Consensus 452 hkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGR----K---~vGGkLev 498 (523)
T KOG3837|consen 452 HKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGR----K---AVGGKLEV 498 (523)
T ss_pred eccccccccceeceeeeeehhhhcccchhhceeccccc----c---ccCCeeEE
Confidence 87654 46789999999999886543333445555422 1 23677766
No 302
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=87.75 E-value=3.3 Score=38.77 Aligned_cols=56 Identities=11% Similarity=0.117 Sum_probs=34.5
Q ss_pred CcEEEEEEEecCCceeeEeeeccccCCCCCceee---eEEeeeccCCCCccEEEEEEeecC
Q 010107 154 DPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS---VFLNIQQVGSKDSPLIIECFNFNS 211 (518)
Q Consensus 154 DPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e---f~~~~~~l~~~~~~L~veV~D~d~ 211 (518)
.-|+++.+.. ++.....-+|....-+-+|.||| |.+.+..| ..+..|.|.||++..
T Consensus 31 ~l~V~~~Ly~-g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dL-P~~arLc~ti~~~~~ 89 (178)
T cd08399 31 TVFVEANIQH-GQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDL-PKGALLNLQIYCGKA 89 (178)
T ss_pred EEEEEEEEEE-CCeecccceeeccCCCCCccccccEECccccccC-ChhhEEEEEEEEEec
Confidence 3567765553 23222233566666667899999 33444444 357789999999743
No 303
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=87.73 E-value=3.5 Score=42.65 Aligned_cols=101 Identities=21% Similarity=0.361 Sum_probs=68.1
Q ss_pred EEEEEeecCCCcCCCCCCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-e--EEe---eeccCCCCccEEEEEEe
Q 010107 135 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-V--FLN---IQQVGSKDSPLIIECFN 208 (518)
Q Consensus 135 i~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f--~~~---~~~l~~~~~~L~veV~D 208 (518)
++-+++|++++.. ..-|.+.....+ | ....|..+..+-.|.|+. . ++. ++.+--.+.+|+++||-
T Consensus 3 vl~i~egr~F~~~----~~~~~vv~a~~n--g---~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a 73 (340)
T PF12416_consen 3 VLSILEGRNFPQR----PRHPIVVEAKFN--G---ESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFA 73 (340)
T ss_pred EEEEecccCCCCC----CCccEEEEEEeC--C---ceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEE
Confidence 4446789998864 233555444442 2 367888888888999986 1 221 22222237899999999
Q ss_pred ec-CCCCCcceEEEEEechhh---hhc--cCCCceEEeeccc
Q 010107 209 FN-SNGKHDLIGKVQKSLADL---EKL--HSSGQGQNLFLST 244 (518)
Q Consensus 209 ~d-~~~~~d~IG~~~i~l~~L---~~~--~~~~~~~~l~n~~ 244 (518)
.| ..+..+.||.+-++|... ... .-..+||.|+..+
T Consensus 74 ~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~ 115 (340)
T PF12416_consen 74 VDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSS 115 (340)
T ss_pred ecCCCCcceeccEEEEEccccccccccccccCCCeeEccccc
Confidence 99 667789999999999988 432 1234678888763
No 304
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=87.68 E-value=3.3 Score=38.61 Aligned_cols=89 Identities=13% Similarity=0.239 Sum_probs=51.6
Q ss_pred EEEEeecCCCcCCCCCCCCcEEEEEEEecCCceee-EeeeccccCCCCCceee---eEEeeeccCCCCccEEEEEEeecC
Q 010107 136 ELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIP-VCKTEVLKNETKPTWKS---VFLNIQQVGSKDSPLIIECFNFNS 211 (518)
Q Consensus 136 ~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~-~~kTevik~tlnP~W~e---f~~~~~~l~~~~~~L~veV~D~d~ 211 (518)
+.++.+.++...+ ..++-|+++.+.. +++... ...|..+.-+-.+.|+| |.+.+..| +.+..|.|.+|+...
T Consensus 12 i~i~~~~~~~~~~--~~~~l~V~~~lyh-G~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dL-Pr~ArLciti~~~~~ 87 (173)
T cd08693 12 ITLHKISNLNAAE--RTMKVGVQAGLFH-GGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDL-PRMARLCFAIYEVSK 87 (173)
T ss_pred EEEEEeccCccCC--CCceEEEEEEEEE-CCEEccCceEccccCCCCccccceeEEcccchhcC-ChhHeEEEEEEEecc
Confidence 3345666665412 3356688876654 232221 23455444456799999 33444444 457789999999764
Q ss_pred CC----------------CCcceEEEEEechhh
Q 010107 212 NG----------------KHDLIGKVQKSLADL 228 (518)
Q Consensus 212 ~~----------------~~d~IG~~~i~l~~L 228 (518)
.. +...||.+.++|-+-
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 88 KAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred cccccccccccccccccCcceEEEEEeEEEEcc
Confidence 32 135677776666543
No 305
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=85.33 E-value=3.7 Score=38.47 Aligned_cols=45 Identities=18% Similarity=0.315 Sum_probs=38.5
Q ss_pred cEEEEEeeeeeeCCCCCceeeEEEEEEEeC--ceeEEEEEEEEecCC
Q 010107 12 ALVEVGRTEVVLNSLNPTWITKHIITYQFE--VVQTLVFRIYDVDTQ 56 (518)
Q Consensus 12 ~~~ev~rTevi~~~lNP~f~~~f~~~~~fe--~~q~L~~~VyD~D~~ 56 (518)
.+...+.|-|...+.+|.|.+.+.+..-.+ ....|+|+.|+++..
T Consensus 51 ~~~~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~ 97 (179)
T cd08696 51 EFLTEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQ 97 (179)
T ss_pred ccceeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeecc
Confidence 478899999999999999999999987655 445999999998853
No 306
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=80.36 E-value=19 Score=33.73 Aligned_cols=60 Identities=10% Similarity=0.195 Sum_probs=33.9
Q ss_pred eeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCCCCC---cceEEEEEechh
Q 010107 168 HIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKH---DLIGKVQKSLAD 227 (518)
Q Consensus 168 ~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~~~~---d~IG~~~i~l~~ 227 (518)
....+.|.+...+.+|.|++ |.+.+..--..+..|.|++++.....+. ..+|.+.++|-+
T Consensus 57 ~~~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 57 FVTSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -BS-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred cceEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 45578899999999999998 5554432223467899999997654322 699999999877
No 307
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=79.81 E-value=2.4 Score=48.13 Aligned_cols=89 Identities=12% Similarity=0.155 Sum_probs=60.2
Q ss_pred eEEEEEeecCCCcCCCCCCCCcEEEEEEEe-cCCceeeEeeecccc-CCCCCceeeeEEeeecc-CCCCccEEEEEEeec
Q 010107 134 TTELILRCSDLDCKDLFSRNDPFLVISKIV-ESGTHIPVCKTEVLK-NETKPTWKSVFLNIQQV-GSKDSPLIIECFNFN 210 (518)
Q Consensus 134 li~~~i~a~~L~~~d~~g~sDPyv~i~~~~-~~~~~~~~~kTevik-~tlnP~W~ef~~~~~~l-~~~~~~L~veV~D~d 210 (518)
+-+.+++|.=|..++.. .||.+-+.+ +.......+||+++. +++||+|++-.+.+... -+.-..|+|.||+..
T Consensus 705 ~sV~VISgqFLSdrkvg----tyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg 780 (1189)
T KOG1265|consen 705 LSVTVISGQFLSDRKVG----TYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG 780 (1189)
T ss_pred EEEEEEeeeeccccccC----ceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccC
Confidence 44556888888766543 688886654 222233567888776 55999999832233322 223568999999853
Q ss_pred CCCCCcceEEEEEechhhhh
Q 010107 211 SNGKHDLIGKVQKSLADLEK 230 (518)
Q Consensus 211 ~~~~~d~IG~~~i~l~~L~~ 230 (518)
..+||+=-+++..|..
T Consensus 781 ----gK~ig~RIlpvd~l~~ 796 (1189)
T KOG1265|consen 781 ----GKFIGQRILPVDGLNA 796 (1189)
T ss_pred ----CceeeeeccchhcccC
Confidence 4699999999999853
No 308
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=78.87 E-value=7.8 Score=35.91 Aligned_cols=91 Identities=18% Similarity=0.202 Sum_probs=54.5
Q ss_pred EEEEeecCCCcCCCCCCCCcEEEEEEEecCCceee-Eeeecccc--C--CCCCceee---eEEeeeccCCCCccEEEEEE
Q 010107 136 ELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIP-VCKTEVLK--N--ETKPTWKS---VFLNIQQVGSKDSPLIIECF 207 (518)
Q Consensus 136 ~~~i~a~~L~~~d~~g~sDPyv~i~~~~~~~~~~~-~~kTevik--~--tlnP~W~e---f~~~~~~l~~~~~~L~veV~ 207 (518)
+.+.++.+++.......+|-|+.+.+.. +++... ...|+... + ...+.|++ |.+.+..| ..+..|.|.+|
T Consensus 12 i~v~~~h~~~~~~~~~~~~~~v~~~l~~-g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~L-PrearL~itl~ 89 (171)
T cd04012 12 VTVSSLHRIPPTWVQSFEDFYLSCSLYH-GGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQL-PRESRLVLTLY 89 (171)
T ss_pred EEEEEeecCChHHhhccccEEEEEEEEE-CCEECcCceeccccccccCccccccccceEECccchhcC-ChhHEEEEEEE
Confidence 3345666776644334577888887764 232221 22333211 1 23577998 33444444 45788999999
Q ss_pred eecCCC---------CCcceEEEEEechhh
Q 010107 208 NFNSNG---------KHDLIGKVQKSLADL 228 (518)
Q Consensus 208 D~d~~~---------~~d~IG~~~i~l~~L 228 (518)
+....+ .+..||.+.++|-+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 90 GTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEecCCccccccccccceEEEEEeEeeEcc
Confidence 987654 356899888887664
No 309
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=77.60 E-value=10 Score=35.92 Aligned_cols=46 Identities=11% Similarity=0.226 Sum_probs=38.3
Q ss_pred CCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCce--eEEEEEEEEecC
Q 010107 10 DGALVEVGRTEVVLNSLNPTWITKHIITYQFEVV--QTLVFRIYDVDT 55 (518)
Q Consensus 10 ~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~--q~L~~~VyD~D~ 55 (518)
+..+.--.||-|.+.+.+|.|+|++.+.+..+.. -.|+|.++....
T Consensus 48 g~~~~se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~ 95 (196)
T cd08694 48 GEEPIDEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSS 95 (196)
T ss_pred CCCcceeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeecc
Confidence 4457788899999999999999999998876643 489999998764
No 310
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=77.44 E-value=8.1 Score=36.51 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=35.3
Q ss_pred EEEEEeeeeeeCCCCCceeeEEEEEEEeCce--eEEEEEEEEecC
Q 010107 13 LVEVGRTEVVLNSLNPTWITKHIITYQFEVV--QTLVFRIYDVDT 55 (518)
Q Consensus 13 ~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~--q~L~~~VyD~D~ 55 (518)
..--.+|-|...+.+|.|+|++.+.+..+.. -.|+|+++....
T Consensus 51 ~~se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~ 95 (189)
T cd08695 51 PCSEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCST 95 (189)
T ss_pred ccceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeee
Confidence 3445799999999999999999999876644 489999998764
No 311
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=77.02 E-value=22 Score=42.40 Aligned_cols=171 Identities=16% Similarity=0.216 Sum_probs=118.6
Q ss_pred cceEEEEEeeehhhhhhhhhcccCce-eeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCC
Q 010107 255 NSQLFVDKFSESVQYTFLDYLAGGFE-LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKR 333 (518)
Q Consensus 255 ~G~i~l~~~~~~~~~sFldyi~~g~~-~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~d~~ 333 (518)
...+-+-.|+..+ -||.+-.. -.+.|-+|.++| |.. -.+.-|-..+.++|.-..++..
T Consensus 204 ~~~idl~D~R~r~-----Wyi~aAt~pKdiviLlD~SgS------------m~g----~~~~lak~tv~~iLdtLs~~Df 262 (1104)
T KOG2353|consen 204 DNSIDLYDCRNRS-----WYIQAATSPKDIVILLDVSGS------------MSG----LRLDLAKQTVNEILDTLSDNDF 262 (1104)
T ss_pred CCcceeeeccccc-----ccccccCCccceEEEEecccc------------ccc----hhhHHHHHHHHHHHHhcccCCe
Confidence 4555555664433 35665544 788999999997 542 3566666677778888888888
Q ss_pred cceeeecccCCCCCceeEEecCCCCCCCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhc-----ccCC
Q 010107 334 FPAWGFGARPIDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLA-----NHGQ 408 (518)
Q Consensus 334 ~~~~gFG~~~~~~~~~~~f~l~~~~~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~-----~~~~ 408 (518)
+-+.-|+.. ...++-|| .++-+++--.-.+..++.+..+.+.|-++|.-.++.|-+.-..... +.+.
T Consensus 263 vni~tf~~~--~~~v~pc~------~~~lvqAt~~nk~~~~~~i~~l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~ 334 (1104)
T KOG2353|consen 263 VNILTFNSE--VNPVSPCF------NGTLVQATMRNKKVFKEAIETLDAKGIANYTAALEYAFSLLRDYNDSRANTQRSP 334 (1104)
T ss_pred EEEEeeccc--cCcccccc------cCceeecchHHHHHHHHHHhhhccccccchhhhHHHHHHHHHHhccccccccccc
Confidence 888888765 22334453 3456777777778888899999999999999999988876553211 2345
Q ss_pred ceEEEEEEeCCCcCCHHHHHHHHHHcc-CCCeEEEEEecCCCcchhh
Q 010107 409 KYFVLLIITDGVVTDLQETKDALVKAS-DLPLSILIIGVGGADFKEM 454 (518)
Q Consensus 409 ~y~vlliltdG~i~d~~~t~~~i~~as-~lPlsiiiVGvG~~~f~~m 454 (518)
-+.+.+++|||...+..++.+.-..-. ..-++=..||-+..+|..+
T Consensus 335 C~~~iml~tdG~~~~~~~If~~yn~~~~~Vrvftflig~~~~~~~~~ 381 (1104)
T KOG2353|consen 335 CNQAIMLITDGVDENAKEIFEKYNWPDKKVRVFTFLIGDEVYDLDEI 381 (1104)
T ss_pred cceeeEEeecCCcccHHHHHHhhccCCCceEEEEEEecccccccccc
Confidence 789999999999988888887766542 3444555566666666554
No 312
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=75.40 E-value=5.8 Score=36.41 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=40.9
Q ss_pred EeeeeeeCCCCCceeeEEEEEEEeCc---eeEEEEEEEEecCCcccccccccCccCcceeEEEEEeccc
Q 010107 17 GRTEVVLNSLNPTWITKHIITYQFEV---VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQ 82 (518)
Q Consensus 17 ~rTevi~~~lNP~f~~~f~~~~~fe~---~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~ 82 (518)
-+|..+.-+..+.|+|-+.|++.... .-.|.|.|||.+.. ++...+|.+.++|=+
T Consensus 49 v~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~-----------~~~~~vg~~~~~lFd 106 (159)
T cd08397 49 VQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGT-----------GKAVPFGGTTLSLFN 106 (159)
T ss_pred EEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCC-----------CCceEEEEEEEeeEC
Confidence 36666666677899998888765443 34899999998853 357789999888654
No 313
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=74.36 E-value=13 Score=34.97 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=36.9
Q ss_pred EEEEEeeeeeeCCCCCceeeEEEEEEEeC--ceeEEEEEEEEecC
Q 010107 13 LVEVGRTEVVLNSLNPTWITKHIITYQFE--VVQTLVFRIYDVDT 55 (518)
Q Consensus 13 ~~ev~rTevi~~~lNP~f~~~f~~~~~fe--~~q~L~~~VyD~D~ 55 (518)
+..-+.|-|...+.+|.|.+.+.+..-.+ ....|+|+.|+.+.
T Consensus 54 ~~~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc 98 (185)
T cd08697 54 FTTSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSC 98 (185)
T ss_pred cceEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeecc
Confidence 78889999999999999999998876544 55699999999874
No 314
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=74.15 E-value=8.9 Score=36.95 Aligned_cols=149 Identities=17% Similarity=0.241 Sum_probs=73.3
Q ss_pred ceeeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHH---HHHHhhhcccccCCCCcceeeecccCCCCCcee-EEec
Q 010107 279 FELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRA---ILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSH-CFNL 354 (518)
Q Consensus 279 ~~~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~a---i~~i~~i~~~yd~d~~~~~~gFG~~~~~~~~~~-~f~l 354 (518)
...-+.+-||+|+| |.. .+-.-| ...+.+.|+.-.- ...++||--...++..+. ..-=
T Consensus 11 ~d~~VtlLID~SGS------------Mrg----r~~~vA~~~adila~aL~~~gv--p~EVlGFtT~aw~gg~~~~~w~~ 72 (219)
T PF11775_consen 11 RDTVVTLLIDCSGS------------MRG----RPIEVAALCADILARALERCGV--PVEVLGFTTRAWKGGRSREAWLA 72 (219)
T ss_pred CCeEEEEEEeCCcC------------CCC----ChHHHHHHHHHHHHHHHHhCCC--CeEEEeeecCCcCCcchHHHHHh
Confidence 34678889999997 542 233333 3446677776643 366899965533221111 1111
Q ss_pred CCCCCCCcccChHHHHHH-HHhhhccceecCCCChHHHHH----------HHHHHHHhhhcccCCceEEEEEEeCCCcCC
Q 010107 355 NGSNSYCEVEGIPGIMMA-YTSALHNVNLAGPTLFGPVIS----------NAALIAGQSLANHGQKYFVLLIITDGVVTD 423 (518)
Q Consensus 355 ~~~~~~~~~~g~~~i~~~-Y~~~~~~~~~~gpt~f~pvi~----------~~~~~a~~~~~~~~~~y~vlliltdG~i~d 423 (518)
.|.+..|. =+.++... |+.+-... --+..+++.+++ +|+..|.+........--||++|+||...|
T Consensus 73 ~G~p~~pg--rln~l~h~vyk~a~~~w-rraR~~l~~m~~~~~~~eniDGeAl~~a~~rL~~r~e~rkiLiViSDG~P~d 149 (219)
T PF11775_consen 73 AGRPRYPG--RLNDLRHIVYKDADTPW-RRARRNLGLMMREGLLKENIDGEALRWAAERLLARPEQRKILIVISDGAPAD 149 (219)
T ss_pred cCCCCCCh--HHHHHHHHHHHhcCChh-hhHHHhHHHHhhccccccCCcHHHHHHHHHHHHcCCccceEEEEEeCCCcCc
Confidence 23333221 13333322 32221100 001223333332 233444433323344555999999998874
Q ss_pred -----------HHHHHHHHHHcc--CCCeEEEEEecCC
Q 010107 424 -----------LQETKDALVKAS--DLPLSILIIGVGG 448 (518)
Q Consensus 424 -----------~~~t~~~i~~as--~lPlsiiiVGvG~ 448 (518)
++.-.++.++.- .-|+.++-||||.
T Consensus 150 ~st~~~n~~~~L~~HLr~vi~~ie~~~~Vel~aiGIg~ 187 (219)
T PF11775_consen 150 DSTLSANDGDYLDAHLRQVIAEIETRSDVELIAIGIGH 187 (219)
T ss_pred ccccccCChHHHHHHHHHHHHHHhccCCcEEEEEEcCC
Confidence 222333333332 3488999999986
No 315
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=72.17 E-value=17 Score=32.42 Aligned_cols=58 Identities=24% Similarity=0.259 Sum_probs=41.9
Q ss_pred EEEeeeeeeCC-CCCceeeEEEEEEEeC---ceeEEEEEEEEecCCcccccccccCccCc----ceeEEEEEecccc
Q 010107 15 EVGRTEVVLNS-LNPTWITKHIITYQFE---VVQTLVFRIYDVDTQFHNVDVKTLKLVEQ----QFLGEATCTLSQI 83 (518)
Q Consensus 15 ev~rTevi~~~-lNP~f~~~f~~~~~fe---~~q~L~~~VyD~D~~~~~~~~~~~~l~~~----d~iG~~~~~L~~l 83 (518)
.+-+|..+.-+ .+|.|++.+.|++... +.-.|.|.||+.+.. ... ..||.+.++|=+-
T Consensus 20 p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~-----------~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 20 PVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSK-----------KKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECS-----------TTT--EEEEEEEEEEESB-T
T ss_pred CeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCC-----------CccccceeEEEEEEEEeECC
Confidence 45578777777 8999999998887544 345899999998864 122 7899999987654
No 316
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=71.93 E-value=31 Score=33.02 Aligned_cols=154 Identities=10% Similarity=0.069 Sum_probs=74.0
Q ss_pred EEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccc---ccCCCCcceeeecccCC-----CCCceeEEec
Q 010107 283 FMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQV---YDSDKRFPAWGFGARPI-----DGPVSHCFNL 354 (518)
Q Consensus 283 ~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~---yd~d~~~~~~gFG~~~~-----~~~~~~~f~l 354 (518)
+++.||.|. |+|-..+. ...+.+.|++++-.+++. ..+.-.+-++.||.... .....|.|.+
T Consensus 2 ~vflID~s~---------sM~~~~~~-~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~~l 71 (224)
T PF03731_consen 2 TVFLIDVSP---------SMFEPSSE-SESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIFVL 71 (224)
T ss_dssp EEEEEE-SC---------GGGS-BTT-CS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEEEE
T ss_pred EEEEEECCH---------HHCCCCCC-cchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceEEe
Confidence 688999999 45533333 123788888888776653 33335599999998732 2233455555
Q ss_pred CCCCCCCcccChHHHHHHHHhhhccc---eecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCc-----CCHHH
Q 010107 355 NGSNSYCEVEGIPGIMMAYTSALHNV---NLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVV-----TDLQE 426 (518)
Q Consensus 355 ~~~~~~~~~~g~~~i~~~Y~~~~~~~---~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i-----~d~~~ 426 (518)
. ...-|...-+..+.+.-......- .-.....+..++-.+..+-+..........--++++||++- ++++.
T Consensus 72 ~-~l~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p~~~~~~~~~ 150 (224)
T PF03731_consen 72 Q-PLDPPSAERLKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGPHEDDDELER 150 (224)
T ss_dssp E-ECC--BHHHHHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SSTTT-CCCHHH
T ss_pred e-cCCccCHHHHHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCCCHHHHHH
Confidence 3 233344443433332111100000 11234567777776666544311112222345688998753 23444
Q ss_pred HHHH--HHHccCCCeEEEEEecC
Q 010107 427 TKDA--LVKASDLPLSILIIGVG 447 (518)
Q Consensus 427 t~~~--i~~as~lPlsiiiVGvG 447 (518)
+++. ..+....-+.+..+.+.
T Consensus 151 ~~~~l~~~Dl~~~~i~~~~~~l~ 173 (224)
T PF03731_consen 151 IIQKLKAKDLQDNGIEIELFFLP 173 (224)
T ss_dssp HHHHHHHHHHHHHTEEEEEEECT
T ss_pred HHHhhccccchhcCcceeEeecC
Confidence 5454 44455677777777773
No 317
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=71.16 E-value=21 Score=33.28 Aligned_cols=63 Identities=21% Similarity=0.211 Sum_probs=41.8
Q ss_pred EEEEEeeeeeeCCCCCceeeEEEEEEEeCc--eeEEEEEEEEecCCcccccccccCccCcceeEEEEEeccc
Q 010107 13 LVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQ 82 (518)
Q Consensus 13 ~~ev~rTevi~~~lNP~f~~~f~~~~~fe~--~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~ 82 (518)
.....+|-+ ..+.+|.|++.|.+.+..+. ...|.|++|+.+...+. .-.....+|.+-++|-+
T Consensus 51 ~~s~~~sv~-~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~------~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 51 LRSEYTSVV-YYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQ------GDKEETPFGYAFLPLMD 115 (178)
T ss_pred cceeEEEEE-EcCCCCCCceeEEEecCCccCCCeEEEEEEEcccccccc------CCCccceEEEEEEeccc
Confidence 344555544 44499999999999876553 56999999998853100 01235667777777654
No 318
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=70.22 E-value=21 Score=32.66 Aligned_cols=93 Identities=15% Similarity=0.176 Sum_probs=67.1
Q ss_pred EEEeeeeeeCCCCCceeeEEEEEEEeCc-------------eeEEEEEEEEecCCcccccccccCccCcceeEEEEEecc
Q 010107 15 EVGRTEVVLNSLNPTWITKHIITYQFEV-------------VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLS 81 (518)
Q Consensus 15 ev~rTevi~~~lNP~f~~~f~~~~~fe~-------------~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~ 81 (518)
+-++|+-+.-+.+|.|++.|-++..-+. .+++.+.|.-.|.. +...++|+-.++..
T Consensus 45 QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~-----------~~~~Lv~s~~ldWR 113 (156)
T PF15627_consen 45 QRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPS-----------GETTLVGSHFLDWR 113 (156)
T ss_pred ceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCC-----------CceEeeeeceehHH
Confidence 6899999999999999999998875442 35788888877753 34589999999999
Q ss_pred ccccccce--eEEEeccCCcccccccccCCCCCCCCcccceeeeeceeeec
Q 010107 82 QIVTRKNR--SLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEECIN 130 (518)
Q Consensus 82 ~l~~~~~~--~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~~~~ 130 (518)
.++.+... .+...|.+. +.. ..-..|-|.+++|-.+.
T Consensus 114 ~vL~s~~~~~~~~vEL~G~----------~~e--~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 114 KVLCSGNGSTSFTVELCGV----------GPE--SKVPVGILDLRLELLPN 152 (156)
T ss_pred HHhccCCCccceeEEEecc----------CCC--CccceeEEEEEEEeecC
Confidence 99988765 444555431 000 01246888888876654
No 319
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=70.10 E-value=61 Score=30.79 Aligned_cols=133 Identities=17% Similarity=0.204 Sum_probs=82.4
Q ss_pred CCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEecCCCCCCCcccChHHHHHHHHhhhccceecCCCC
Q 010107 308 SGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTL 387 (518)
Q Consensus 308 ~~~~n~y~~ai~~i~~i~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~ 387 (518)
+.+||.++-++..+-..++.|=+.+-+.=.|+-.- .++...-..+|+||+ +..+++.++..+ ....|-..
T Consensus 12 D~~PtRl~~~~~~l~~Fv~eff~qNPiSqlgii~~-~~~~a~~ls~lsgn~--------~~h~~~L~~~~~-~~~~G~~S 81 (193)
T PF04056_consen 12 DLKPTRLQCVLKALEEFVREFFDQNPISQLGIIVM-RDGRAERLSELSGNP--------QEHIEALKKLRK-LEPSGEPS 81 (193)
T ss_pred cCCccHHHHHHHHHHHHHHHHHhcCChhheeeeee-ecceeEEeeecCCCH--------HHHHHHHHHhcc-CCCCCChh
Confidence 34789999999999998877766666666677553 344445567888853 345555544442 34555444
Q ss_pred hHHHHHHHHHHHHhhhc--ccCCceEEEEEE---eCCCcCCHHHHHHHHHHccCCCeEEEEEecCCCcchhhhhcc
Q 010107 388 FGPVISNAALIAGQSLA--NHGQKYFVLLII---TDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILD 458 (518)
Q Consensus 388 f~pvi~~~~~~a~~~~~--~~~~~y~vllil---tdG~i~d~~~t~~~i~~as~lPlsiiiVGvG~~~f~~m~~ld 458 (518)
++.+.+.|..... +.-..=-||+|+ |.-+-.|..+|++.+++. -|-+=+||++. .-..+++|-
T Consensus 82 ----LqN~Le~A~~~L~~~p~~~srEIlvi~gSl~t~Dp~di~~ti~~l~~~---~IrvsvI~laa-Ev~I~k~i~ 149 (193)
T PF04056_consen 82 ----LQNGLEMARSSLKHMPSHGSREILVIFGSLTTCDPGDIHETIESLKKE---NIRVSVISLAA-EVYICKKIC 149 (193)
T ss_pred ----HHHHHHHHHHHHhhCccccceEEEEEEeecccCCchhHHHHHHHHHHc---CCEEEEEEEhH-HHHHHHHHH
Confidence 4555555554421 111223577776 555667888899988866 45556677766 344556666
No 320
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.39 E-value=14 Score=37.31 Aligned_cols=123 Identities=22% Similarity=0.265 Sum_probs=68.5
Q ss_pred hhhhcccCce---eeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCC
Q 010107 271 FLDYLAGGFE---LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGP 347 (518)
Q Consensus 271 Fldyi~~g~~---~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~d~~~~~~gFG~~~~~~~ 347 (518)
--+|++|-.. +..++|||-|+| +.. -...++|..|-.|+ .| +-+.++-.-+-. .
T Consensus 249 R~~yL~g~~~e~l~~i~vaVDtSGS------------~~d----~ei~a~~~Ei~~Il-~~---~~~eltli~~D~---~ 305 (396)
T COG3864 249 RQPYLRGKLSEHLIKIVVAVDTSGS------------MTD----AEIDAAMTEIFDIL-KN---KNYELTLIECDN---I 305 (396)
T ss_pred ccccccccchhhhhheEEEEecCCC------------ccH----HHHHHHHHHHHHHH-hC---CCcEEEEEEecc---h
Confidence 4467776544 678999999997 542 46667777777777 22 334455444320 0
Q ss_pred ceeEEe-cCCCCCCCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcCCHHH
Q 010107 348 VSHCFN-LNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQE 426 (518)
Q Consensus 348 ~~~~f~-l~~~~~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~ 426 (518)
+-..+- -.|+..++ .+.=.|.|.|+||++.. ++.. . =.+|+.+|||-- |...
T Consensus 306 v~~~~~~r~g~~~~~-----------------~~~ggG~Tdf~Pvfeyl----ek~~----~-~~~lIyfTDG~g-d~p~ 358 (396)
T COG3864 306 VRRMYRVRKGRDMKK-----------------KLDGGGGTDFSPVFEYL----EKNR----M-ECFLIYFTDGMG-DQPL 358 (396)
T ss_pred hhhhhccCCcccCCc-----------------ccCCCCCccccHHHHHH----Hhhc----c-cceEEEEccCCC-Cccc
Confidence 000000 01222222 22225779999999765 2211 1 278899999965 3332
Q ss_pred HHHHHHHccCCCeEEEEEecCCC
Q 010107 427 TKDALVKASDLPLSILIIGVGGA 449 (518)
Q Consensus 427 t~~~i~~as~lPlsiiiVGvG~~ 449 (518)
.+-.-|+-|+.-|-|..
T Consensus 359 ------~~r~~~~lwVl~~~~~e 375 (396)
T COG3864 359 ------VFRPKVLLWVLTGAKGE 375 (396)
T ss_pred ------ccCCcceEEEecCCccc
Confidence 23345688888776543
No 321
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=69.09 E-value=26 Score=29.29 Aligned_cols=57 Identities=14% Similarity=0.271 Sum_probs=35.1
Q ss_pred CCcEEEEEEEecCCceee-EeeeccccCCCCCceee-eE--EeeeccCCCCccEEEEEEeecC
Q 010107 153 NDPFLVISKIVESGTHIP-VCKTEVLKNETKPTWKS-VF--LNIQQVGSKDSPLIIECFNFNS 211 (518)
Q Consensus 153 sDPyv~i~~~~~~~~~~~-~~kTevik~tlnP~W~e-f~--~~~~~l~~~~~~L~veV~D~d~ 211 (518)
++-|+.+.+.. +++... ...|..+.-...+.||| .. +.+..| +.+..|.|.+|+...
T Consensus 32 ~~l~v~~~l~~-g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~L-Pr~a~L~~~i~~~~~ 92 (100)
T smart00142 32 SDLYVEIQLYH-GGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDL-PREARLCITIYEVKN 92 (100)
T ss_pred ceEEEEEEEEE-CCEEccCcEEecccCCCCCcccceeEEccCchhcC-ChhhEEEEEEEEeeC
Confidence 57788887664 233221 22455544455689999 33 344444 357789999999754
No 322
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=62.70 E-value=99 Score=29.43 Aligned_cols=59 Identities=20% Similarity=0.133 Sum_probs=39.4
Q ss_pred eeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCC----CCCcceEEEEEech
Q 010107 168 HIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN----GKHDLIGKVQKSLA 226 (518)
Q Consensus 168 ~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~----~~~d~IG~~~i~l~ 226 (518)
...-++|-|...+.+|.|+| +++.+..-.-....|.|+++..... .....+|.+-++|-
T Consensus 51 ~~se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 51 PIDEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred cceeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 45578999989999999999 5543322112356799999775432 12257888777764
No 323
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=61.25 E-value=1.1e+02 Score=26.71 Aligned_cols=70 Identities=17% Similarity=0.332 Sum_probs=46.2
Q ss_pred Eeeeee-eCCCCCceeeEEEEEEEeCc------e--eEEEEEEEEecCCcccccccccCccCcceeEEEEEeccccccc-
Q 010107 17 GRTEVV-LNSLNPTWITKHIITYQFEV------V--QTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTR- 86 (518)
Q Consensus 17 ~rTevi-~~~lNP~f~~~f~~~~~fe~------~--q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~~- 86 (518)
++|+.. -.+-.=.|++.|.+...+-. . -.+.|.|+..+.. ++...+|.+.++|++.+..
T Consensus 40 ~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~-----------~~k~~lG~~~inLaey~~~~ 108 (143)
T PF10358_consen 40 GTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGS-----------GKKKVLGKVSINLAEYANED 108 (143)
T ss_pred eeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCC-----------CccceEEEEEEEHHHhhCcC
Confidence 444443 23444689999988743211 1 2789999988532 1236899999999999875
Q ss_pred -cceeEEEeccC
Q 010107 87 -KNRSLTLDLVR 97 (518)
Q Consensus 87 -~~~~~~~~L~~ 97 (518)
......++|..
T Consensus 109 ~~~~~~~~~l~~ 120 (143)
T PF10358_consen 109 EEPITVRLLLKK 120 (143)
T ss_pred CCcEEEEEeCcc
Confidence 34566667654
No 324
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=61.15 E-value=15 Score=33.30 Aligned_cols=58 Identities=21% Similarity=0.111 Sum_probs=40.3
Q ss_pred EEeeeeeeCCCCCceeeEEEEEEEeC---ceeEEEEEEEEecCCcccccccccCccCcceeEEEEEeccc
Q 010107 16 VGRTEVVLNSLNPTWITKHIITYQFE---VVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQ 82 (518)
Q Consensus 16 v~rTevi~~~lNP~f~~~f~~~~~fe---~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~ 82 (518)
+..|.......++.|+|.+.|+..+. ..-.|.|.||+.+... -.++..||.+.++|=+
T Consensus 46 ~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~---------~~~~~~iG~~~~~lFd 106 (156)
T cd08380 46 PQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEPG---------SKKEVPLGWVNVPLFD 106 (156)
T ss_pred ceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecCC---------CCcceEEEEEeEEeEc
Confidence 34555544447899999988875433 3348999999988531 0246889999888755
No 325
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=59.30 E-value=41 Score=31.73 Aligned_cols=80 Identities=26% Similarity=0.292 Sum_probs=50.2
Q ss_pred cceecCCCChHHHHHHHHHHHHhhhc---ccCCce--EEEEEEeCCCcCCHHHHHHHHHHccC-CCeEEEEEecC--CCc
Q 010107 379 NVNLAGPTLFGPVISNAALIAGQSLA---NHGQKY--FVLLIITDGVVTDLQETKDALVKASD-LPLSILIIGVG--GAD 450 (518)
Q Consensus 379 ~~~~~gpt~f~pvi~~~~~~a~~~~~---~~~~~y--~vlliltdG~i~d~~~t~~~i~~as~-lPlsiiiVGvG--~~~ 450 (518)
.+.-.|.|-....|+.+.+...+..+ .++..| ....++|||+.+|--.--.++..--. ---|++..++| .+|
T Consensus 72 ~L~a~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD~w~~~~~~~~~~~~~~k~v~a~~~G~~~ad 151 (207)
T COG4245 72 ILTAQGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTDDWQAGAALVFQGERRAKSVAAFSVGVQGAD 151 (207)
T ss_pred ceecCCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcchHHHhHHHHhhhcccccceEEEEEecccccc
Confidence 44556999999999999988775532 222222 24577999999887655544544332 23455555555 457
Q ss_pred chhhhhcc
Q 010107 451 FKEMEILD 458 (518)
Q Consensus 451 f~~m~~ld 458 (518)
-..++++-
T Consensus 152 ~~~L~qit 159 (207)
T COG4245 152 NKTLNQIT 159 (207)
T ss_pred cHHHHHHH
Confidence 66666666
No 326
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=58.02 E-value=28 Score=32.90 Aligned_cols=58 Identities=21% Similarity=0.258 Sum_probs=39.1
Q ss_pred eeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCCC--CCcceEEEEEech
Q 010107 169 IPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNG--KHDLIGKVQKSLA 226 (518)
Q Consensus 169 ~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~~--~~d~IG~~~i~l~ 226 (518)
...++|-|...+.+|.|+| +++.+..-.-....|.|+++...... ....+|.+-++|-
T Consensus 52 ~se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 52 CSEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred cceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 4468999999999999999 55443221123567999887754322 2367888888874
No 327
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=57.31 E-value=6.5 Score=44.81 Aligned_cols=55 Identities=20% Similarity=0.341 Sum_probs=41.6
Q ss_pred EEeeeee-eCCCCCceee-EEEEE-EEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEecccccc
Q 010107 16 VGRTEVV-LNSLNPTWIT-KHIIT-YQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVT 85 (518)
Q Consensus 16 v~rTevi-~~~lNP~f~~-~f~~~-~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~ 85 (518)
-.||+++ -|++||+|++ .|.|. +...+.-.|||.||+..+ .|||.=.+++..|-.
T Consensus 739 ~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEgg---------------K~ig~RIlpvd~l~~ 796 (1189)
T KOG1265|consen 739 EFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEGG---------------KFIGQRILPVDGLNA 796 (1189)
T ss_pred hhhhccccCCCCCcccccCCcccceecccchhheeeeeeccCC---------------ceeeeeccchhcccC
Confidence 4577776 4889999997 45553 444566689999999774 579999999888753
No 328
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=56.80 E-value=1.6e+02 Score=26.98 Aligned_cols=103 Identities=10% Similarity=0.099 Sum_probs=69.3
Q ss_pred CCCCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeecc--C---------CCCccEEEEEEeecCCCCCcce
Q 010107 151 SRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV--G---------SKDSPLIIECFNFNSNGKHDLI 218 (518)
Q Consensus 151 g~sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l--~---------~~~~~L~veV~D~d~~~~~d~I 218 (518)
+..+..+.+++--. .+.++|..+..+.+|.+++ |.+.+..- + ....+|.+-|.--|..+...++
T Consensus 30 ~~~~s~~~l~l~f~----~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv 105 (156)
T PF15627_consen 30 GQVCSTFTLHLHFR----GQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLV 105 (156)
T ss_pred CCCceEEEEEEEec----CceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEee
Confidence 44455666665432 2479999999999999998 55554322 1 1356788999888888878999
Q ss_pred EEEEEechhhhhccCC--CceEEeecccccCCCCCccccceEEEE
Q 010107 219 GKVQKSLADLEKLHSS--GQGQNLFLSTAAGNNNHKILNSQLFVD 261 (518)
Q Consensus 219 G~~~i~l~~L~~~~~~--~~~~~l~n~~~~~k~~~k~~~G~i~l~ 261 (518)
|+-.+....+...... ....+|......+| ...|.+.++
T Consensus 106 ~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~k----v~~GiL~l~ 146 (156)
T PF15627_consen 106 GSHFLDWRKVLCSGNGSTSFTVELCGVGPESK----VPVGILDLR 146 (156)
T ss_pred eeceehHHHHhccCCCccceeEEEeccCCCCc----cceeEEEEE
Confidence 9999999998754333 33455544332222 238888874
No 329
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=56.12 E-value=1.5e+02 Score=27.93 Aligned_cols=60 Identities=10% Similarity=0.205 Sum_probs=41.1
Q ss_pred eeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCC--C-------CCcceEEEEEechh
Q 010107 168 HIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN--G-------KHDLIGKVQKSLAD 227 (518)
Q Consensus 168 ~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~--~-------~~d~IG~~~i~l~~ 227 (518)
....+.|.|...+.+|.|.+ +++.+-.--....-|.|+.++.... . ....+|.+-++|-+
T Consensus 54 ~~~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 54 FTTSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred cceEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 45578899999999999998 5544332222356799999997521 1 13568888888755
No 330
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=55.03 E-value=26 Score=38.12 Aligned_cols=154 Identities=18% Similarity=0.232 Sum_probs=96.6
Q ss_pred ceeeEEEEeccccCCCCCCCCCCcc-ccCCCCC-CCHHHHHHHHHhhhcccccCCCCcceeeecccCCC-C--CceeEEe
Q 010107 279 FELNFMVAVDFTASNGNPRLPDSLH-YLDPSGR-PNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPID-G--PVSHCFN 353 (518)
Q Consensus 279 ~~~~~~~~iDft~sN~~~~~~~slH-~~~~~~~-~n~y~~ai~~i~~i~~~yd~d~~~~~~gFG~~~~~-~--~~~~~f~ 353 (518)
..+-|.+-||+|+| +| +++...+ .--..+|+..++--++--.+- ..+|+|-.+... . .+-..|
T Consensus 445 ~Dla~TLLvD~S~S---------t~a~mdetrRvidl~~eaL~~la~~~qa~gd~--~~~~~fts~rr~~vri~tvk~F- 512 (637)
T COG4548 445 HDLAFTLLVDVSAS---------TDAKMDETRRVIDLFHEALLVLAHGHQALGDS--EDILDFTSRRRPWVRINTVKDF- 512 (637)
T ss_pred ccceeEEEeecccc---------hHHHhhhhhhhHHHHHHHHHHhhchhhhhCCH--HHhcCchhhcCcceeeeeeecc-
Confidence 45778999999995 55 4554312 356778888877666655432 446666655211 1 111111
Q ss_pred cCCCCCCCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcCCHH--------
Q 010107 354 LNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQ-------- 425 (518)
Q Consensus 354 l~~~~~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~-------- 425 (518)
+ .+.-..+ ...+..+++.--|--...|.+|++.-.. .++.=-.|+++|||..+|.+
T Consensus 513 ---D--es~~~~~-------~~RImALePg~ytR~G~AIR~As~kL~~----rpq~qklLivlSDGkPnd~d~YEgr~gI 576 (637)
T COG4548 513 ---D--ESMGETV-------GPRIMALEPGYYTRDGAAIRHASAKLME----RPQRQKLLIVLSDGKPNDFDHYEGRFGI 576 (637)
T ss_pred ---c--ccccccc-------chhheecCccccccccHHHHHHHHHHhc----CcccceEEEEecCCCcccccccccccch
Confidence 0 0000001 1223345566668888888888764332 23555678899999988765
Q ss_pred -HHHHHHHHccCCCeEEEEEecCCCcchhhhhcccC
Q 010107 426 -ETKDALVKASDLPLSILIIGVGGADFKEMEILDAD 460 (518)
Q Consensus 426 -~t~~~i~~as~lPlsiiiVGvG~~~f~~m~~ld~d 460 (518)
.|.+|+.+|-+-.|+++-|=|..+.-+.+-.+-+-
T Consensus 577 eDTr~AV~eaRk~Gi~VF~Vtld~ea~~y~p~~fgq 612 (637)
T COG4548 577 EDTREAVIEARKSGIEVFNVTLDREAISYLPALFGQ 612 (637)
T ss_pred hhHHHHHHHHHhcCceEEEEEecchhhhhhHHHhcc
Confidence 69999999999999999999988766666555533
No 331
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=54.68 E-value=35 Score=28.35 Aligned_cols=46 Identities=22% Similarity=0.264 Sum_probs=34.3
Q ss_pred EEEEEEcCCCcEEEEEeeeeeeCCCCCceeeEEEEEEEeCceeEEEEEEEEecC
Q 010107 2 LVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDT 55 (518)
Q Consensus 2 ~vv~~~~~~~~~~ev~rTevi~~~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~ 55 (518)
||+.+.. +.||+|.-.. -.+..|++.|.++. ++...|.+.||=.|-
T Consensus 13 avLklDn-----~~VgqT~Wk~-~s~q~WDQ~Fti~L--dRsRELEI~VywrD~ 58 (98)
T cd08687 13 AVLKLDN-----TVVGQTQWKP-KSNQAWDQSFTLEL--ERSRELEIAVYWRDW 58 (98)
T ss_pred EEEEEcC-----eEEeeccccc-cccccccceeEEEe--ecccEEEEEEEEecc
Confidence 6666643 3799996643 35788999998776 577799999997774
No 332
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=52.60 E-value=38 Score=31.50 Aligned_cols=57 Identities=12% Similarity=0.219 Sum_probs=39.0
Q ss_pred eEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCC-----CCCcceEEEEEechh
Q 010107 170 PVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN-----GKHDLIGKVQKSLAD 227 (518)
Q Consensus 170 ~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~-----~~~d~IG~~~i~l~~ 227 (518)
..++|-+..+ .+|.|++ |.+.+..--.....|.|++++.... .....+|.+.++|-+
T Consensus 53 s~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 53 SEYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eeEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3456655555 8999998 5554422122367899999997643 336789999998865
No 333
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=52.18 E-value=75 Score=29.78 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=40.9
Q ss_pred eeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCCCC------CcceEEEEEechh
Q 010107 168 HIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGK------HDLIGKVQKSLAD 227 (518)
Q Consensus 168 ~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~~~------~d~IG~~~i~l~~ 227 (518)
....+.|.|...+.+|.|.+ +++.+-.--.....|.|++++.+...+ ...+|.+-++|-+
T Consensus 52 ~~~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 52 FLTEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred cceeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 45578899999999999998 554443222235679999998654322 2468887777654
No 334
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=49.66 E-value=1.8e+02 Score=25.43 Aligned_cols=53 Identities=21% Similarity=0.390 Sum_probs=36.1
Q ss_pred CCCCCceee-eEEeeecc-CC-----CCccEEEEEEeecCCCCCcceEEEEEechhhhhc
Q 010107 179 NETKPTWKS-VFLNIQQV-GS-----KDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKL 231 (518)
Q Consensus 179 ~tlnP~W~e-f~~~~~~l-~~-----~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~ 231 (518)
.+-.-.|++ |.++.... .. ....+.|.|+.....++...+|.+.++|.++...
T Consensus 48 ~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~ 107 (143)
T PF10358_consen 48 KNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANE 107 (143)
T ss_pred cccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCc
Confidence 345568997 55444333 11 2456889999875444446899999999999763
No 335
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=48.23 E-value=77 Score=29.21 Aligned_cols=65 Identities=12% Similarity=0.211 Sum_probs=44.1
Q ss_pred EEEEEEcCCCcEEEEEeeeeeeC--CCCCceeeEEEEEEEeCceeEEEEEEEEecCCcccccccccCccCcceeEEEEEe
Q 010107 2 LVVYMKARDGALVEVGRTEVVLN--SLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCT 79 (518)
Q Consensus 2 ~vv~~~~~~~~~~ev~rTevi~~--~lNP~f~~~f~~~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~ 79 (518)
+.||.++ .+|.+|+...- +.-=.|++.|.+... ...+.|.++||.... ..+..|+++.++
T Consensus 41 ikl~~N~-----k~V~~T~~~~l~~dF~v~f~~~f~v~i~-~~Pesi~l~i~E~~~------------~~~~~la~v~vp 102 (168)
T PF15625_consen 41 IKLFFND-----KEVSRTRSRPLWSDFRVHFNEIFNVQIT-RWPESIKLEIYEKSG------------LSDRLLAEVFVP 102 (168)
T ss_pred EEEEECC-----EEEEeeeeEecCCCeEEeccCEEEEEEe-cCCCEEEEEEEEccC------------ccceEEEEEEee
Confidence 3455544 48999977543 222345666776664 466799999999774 257889999888
Q ss_pred ccccc
Q 010107 80 LSQIV 84 (518)
Q Consensus 80 L~~l~ 84 (518)
+-...
T Consensus 103 vP~~~ 107 (168)
T PF15625_consen 103 VPGST 107 (168)
T ss_pred CCCCc
Confidence 76543
No 336
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=48.22 E-value=45 Score=32.10 Aligned_cols=124 Identities=11% Similarity=0.279 Sum_probs=79.7
Q ss_pred CHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEecCCCCCCCcccChHHHHHHHHhhhccceecCCCChHHH
Q 010107 312 NAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPV 391 (518)
Q Consensus 312 n~y~~ai~~i~~i~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pv 391 (518)
|+|++++++|-..+-+...|...-+.|=|...+... |++ =++.++..|. +..| +-+-+.=.|-
T Consensus 118 ~DYe~~v~aik~~~ppl~k~e~~vlmgHGt~h~s~~---~Ya-----------cLd~~~~~~~--f~~v-~v~~ve~yP~ 180 (265)
T COG4822 118 NDYEICVEAIKDQIPPLNKDEILVLMGHGTDHHSNA---AYA-----------CLDHVLDEYG--FDNV-FVAAVEGYPL 180 (265)
T ss_pred hhHHHHHHHHHHhcCCcCcCeEEEEEecCCCccHHH---HHH-----------HHHHHHHhcC--CCce-EEEEecCCCc
Confidence 999999999999999999998887888887732211 111 1334444331 1111 1122223355
Q ss_pred HHHHHHHHHhhhcccCCceEEEEEEeCC--CcCCHH----HHHHHHHHccCCCeEEEEEecCCC-cchhh
Q 010107 392 ISNAALIAGQSLANHGQKYFVLLIITDG--VVTDLQ----ETKDALVKASDLPLSILIIGVGGA-DFKEM 454 (518)
Q Consensus 392 i~~~~~~a~~~~~~~~~~y~vlliltdG--~i~d~~----~t~~~i~~as~lPlsiiiVGvG~~-~f~~m 454 (518)
+..++++-++..- ...-.+=+.++-| .+.||. ++.+.|-++...+.-...=|+|.- .|..|
T Consensus 181 ~d~vi~~l~~~~~--~~v~L~PlMlvAG~Ha~nDMasddedswk~il~~~G~~v~~~l~GLGE~~~iq~i 248 (265)
T COG4822 181 VDTVIEYLRKNGI--KEVHLIPLMLVAGDHAKNDMASDDEDSWKNILEKNGFKVEVYLHGLGENPAIQAI 248 (265)
T ss_pred HHHHHHHHHHcCC--ceEEEeeeEEeechhhhhhhcccchHHHHHHHHhCCceeEEEeecCCCcHHHHHH
Confidence 6666766665421 1122222556666 478888 999999999999999999999975 56554
No 337
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=47.00 E-value=1.3e+02 Score=25.54 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=33.0
Q ss_pred EEeeeeeeCCCCCceeeEEEEEEEeCc-------eeEEEEEEEEecCCcccccccccCccCcceeEEEEEeccccccccc
Q 010107 16 VGRTEVVLNSLNPTWITKHIITYQFEV-------VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKN 88 (518)
Q Consensus 16 v~rTevi~~~lNP~f~~~f~~~~~fe~-------~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l~~~~~ 88 (518)
...|-++. .+||.++-+-.+.+..+. ...++++++..-+. +...+|.+.++|..++...+
T Consensus 12 tq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~------------d~~tla~~~i~l~~ll~~~~ 78 (107)
T PF11618_consen 12 TQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGS------------DFETLAAGQISLRPLLESNG 78 (107)
T ss_dssp -EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-------------EEEEEEEEE--SHHHH--S
T ss_pred eeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccC------------CeEEEEEEEeechhhhcCCC
Confidence 44566655 899999887776665332 23899999987642 58999999999999997665
Q ss_pred eeE
Q 010107 89 RSL 91 (518)
Q Consensus 89 ~~~ 91 (518)
...
T Consensus 79 ~~i 81 (107)
T PF11618_consen 79 ERI 81 (107)
T ss_dssp --E
T ss_pred ceE
Confidence 333
No 338
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=45.55 E-value=1.4e+02 Score=38.07 Aligned_cols=148 Identities=18% Similarity=0.283 Sum_probs=82.5
Q ss_pred ceeeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCC-CceeEEecCCC
Q 010107 279 FELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDG-PVSHCFNLNGS 357 (518)
Q Consensus 279 ~~~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~d~~~~~~gFG~~~~~~-~~~~~f~l~~~ 357 (518)
-+-++||+||=|.| |+..+-.----..+.-+.+.|..... +.+.+.-||..|-.- +-...|.
T Consensus 4391 r~yqvmisiddsks------------mses~~~~la~etl~lvtkals~le~-g~iav~kfge~~~~lh~fdkqfs---- 4453 (4600)
T COG5271 4391 RTYQVMISIDDSKS------------MSESGSTVLALETLALVTKALSLLEV-GQIAVMKFGEQPELLHPFDKQFS---- 4453 (4600)
T ss_pred ceeEEEEEeccccc------------ccccCceeeehHHHHHHHHHHHHHhh-ccEEEEecCCChhhhCchhhhhc----
Confidence 44689999998887 45432111122334445555555543 569999999984110 0000121
Q ss_pred CCCCcccChHHHHHHHHhhhccceecCC-CChHHHHHHHH---HHHHhhhcccCCceEEEEEEeCCCcCCHHHHHHHHHH
Q 010107 358 NSYCEVEGIPGIMMAYTSALHNVNLAGP-TLFGPVISNAA---LIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVK 433 (518)
Q Consensus 358 ~~~~~~~g~~~i~~~Y~~~~~~~~~~gp-t~f~pvi~~~~---~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~ 433 (518)
...|+ +++.+..|-.. |+.-.+....+ .+|... ........=+||+||...|-+.+.+.+.+
T Consensus 4454 ----~esg~--------~~f~~f~feqs~tnv~~l~~~s~k~f~~a~t~--~h~d~~qleiiisdgicedhdsi~kllrr 4519 (4600)
T COG5271 4454 ----SESGV--------QMFSHFTFEQSNTNVLALADASMKCFNYANTA--SHHDIRQLEIIISDGICEDHDSIRKLLRR 4519 (4600)
T ss_pred ----chHHH--------HHHHhhchhcccccHHHHHHHHHHHHHHhhhh--cccchheeEEEeecCcccchHHHHHHHHH
Confidence 11111 22333333322 33322222222 233322 23345666699999999999999999999
Q ss_pred ccCCCeEEEEEecCCCcchhhhhcc
Q 010107 434 ASDLPLSILIIGVGGADFKEMEILD 458 (518)
Q Consensus 434 as~lPlsiiiVGvG~~~f~~m~~ld 458 (518)
|..--+-|+||=+.+-+-.. ..||
T Consensus 4520 a~e~kvmivfvild~v~t~~-sild 4543 (4600)
T COG5271 4520 AQEEKVMIVFVILDNVNTQK-SILD 4543 (4600)
T ss_pred hhhcceEEEEEEecCCccch-hhhh
Confidence 99888888888665544332 5555
No 339
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=43.58 E-value=43 Score=31.08 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=39.0
Q ss_pred EEeeeeeeCCCCCceeeEEEEEEEeC---ceeEEEEEEEEecCCcccccc-----cccCccCcceeEEEEEeccc
Q 010107 16 VGRTEVVLNSLNPTWITKHIITYQFE---VVQTLVFRIYDVDTQFHNVDV-----KTLKLVEQQFLGEATCTLSQ 82 (518)
Q Consensus 16 v~rTevi~~~lNP~f~~~f~~~~~fe---~~q~L~~~VyD~D~~~~~~~~-----~~~~l~~~d~iG~~~~~L~~ 82 (518)
--.|..+.-+-+|.|+|.+.|+.... +.-.|.|.||+.......... +...-++...||.+.++|=+
T Consensus 45 p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 45 TVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred ceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEc
Confidence 34565555566799999988875433 344899999997643100000 00001235678887777644
No 340
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=40.26 E-value=61 Score=29.68 Aligned_cols=57 Identities=19% Similarity=0.080 Sum_probs=36.3
Q ss_pred eeeeeeCCCCCceeeEEEEEEEeC---ceeEEEEEEEEecCCcccccccccCccCcceeEEEEEeccc
Q 010107 18 RTEVVLNSLNPTWITKHIITYQFE---VVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQ 82 (518)
Q Consensus 18 rTevi~~~lNP~f~~~f~~~~~fe---~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~ 82 (518)
.|..+.- .+|.|+|-+.|+.... +.-.|.|.||+...... .-.+.-.+|.+.++|=+
T Consensus 46 ~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~-------~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 46 NTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKG-------AKEEHCPLAWGNINLFD 105 (158)
T ss_pred EecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEecccC-------CCCceEEEEEEEEEEEC
Confidence 3443443 6799999888876433 33489999999875200 00123568888887654
No 341
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=38.16 E-value=1e+02 Score=28.36 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=44.3
Q ss_pred EEeeeeeeCC-----CCCceeeEEEEEEEeCcee---EEEEEEEEecCCcccccccccCccCcceeEEEEEecccc
Q 010107 16 VGRTEVVLNS-----LNPTWITKHIITYQFEVVQ---TLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQI 83 (518)
Q Consensus 16 v~rTevi~~~-----lNP~f~~~f~~~~~fe~~q---~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l 83 (518)
-|+|.+.+.+ -.=.|+..|++.+.-...+ .|-|+||..|. ++++...|...+.|-.-
T Consensus 40 ~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~-----------~gr~~~~GYG~~~lP~~ 104 (168)
T PF07162_consen 40 EGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLDS-----------WGRDRVEGYGFCHLPTQ 104 (168)
T ss_pred eEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEEEEEEcc-----------cCCeEEeEEeEEEeCCC
Confidence 6888887543 3457999999998866654 89999999994 57899999988877544
No 342
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=35.64 E-value=70 Score=29.93 Aligned_cols=38 Identities=18% Similarity=0.090 Sum_probs=28.8
Q ss_pred eeeeeeCCCCCceeeEEEEEEEeC---ceeEEEEEEEEecC
Q 010107 18 RTEVVLNSLNPTWITKHIITYQFE---VVQTLVFRIYDVDT 55 (518)
Q Consensus 18 rTevi~~~lNP~f~~~f~~~~~fe---~~q~L~~~VyD~D~ 55 (518)
+|....-+.+|.|+|-+.|+.... ..-.|.|.||+...
T Consensus 49 ~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 49 RTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred eeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 677777778899999887775433 33489999999754
No 343
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=34.84 E-value=1.2e+02 Score=25.92 Aligned_cols=55 Identities=20% Similarity=0.124 Sum_probs=35.8
Q ss_pred CccEEEEEEeecC---CCCCcceEEEEEechhhhhc--------------cCCCceEEeecccccCCCCCccccceEEE
Q 010107 199 DSPLIIECFNFNS---NGKHDLIGKVQKSLADLEKL--------------HSSGQGQNLFLSTAAGNNNHKILNSQLFV 260 (518)
Q Consensus 199 ~~~L~veV~D~d~---~~~~d~IG~~~i~l~~L~~~--------------~~~~~~~~l~n~~~~~k~~~k~~~G~i~l 260 (518)
..+|.+.+|+... .....+||.+.+++.++... ...+..|+|.++... ..|+|.+
T Consensus 28 ~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~-------~~G~I~l 99 (112)
T PF14924_consen 28 SFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGN-------PVGEISL 99 (112)
T ss_pred CCceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCc-------eeeeEEE
Confidence 4678887776433 35668999999998887511 122345777775431 1788877
No 344
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=33.18 E-value=1.7e+02 Score=31.23 Aligned_cols=124 Identities=14% Similarity=0.239 Sum_probs=70.9
Q ss_pred CceeeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecc---cC--CC-CC----
Q 010107 278 GFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGA---RP--ID-GP---- 347 (518)
Q Consensus 278 g~~~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~d~~~~~~gFG~---~~--~~-~~---- 347 (518)
+.-+.+.+-+|+|.| |..+ ..........+++-+..+-.+-++ |||. |+ |. ..
T Consensus 97 ~yPvDLYyLMDlS~S------------M~dd--l~~lk~lg~~L~~~m~~it~n~rl---GfGsFVDK~v~P~~~t~p~~ 159 (423)
T smart00187 97 DYPVDLYYLMDLSYS------------MKDD--LDNLKSLGDDLAREMKGLTSNFRL---GFGSFVDKTVSPFVSTRPEK 159 (423)
T ss_pred cCccceEEEEeCCcc------------HHHH--HHHHHHHHHHHHHHHHhcccCcee---eEEEeecCccCCcccCCHHH
Confidence 456889999999997 5533 455556666677777777766554 9996 32 11 10
Q ss_pred -ceeEEecCCCCCCCcccChHHHH------HHHHhhhccceecCCC-----ChHHHHHHHHHHHHhhhcccCCceEEEEE
Q 010107 348 -VSHCFNLNGSNSYCEVEGIPGIM------MAYTSALHNVNLAGPT-----LFGPVISNAALIAGQSLANHGQKYFVLLI 415 (518)
Q Consensus 348 -~~~~f~l~~~~~~~~~~g~~~i~------~~Y~~~~~~~~~~gpt-----~f~pvi~~~~~~a~~~~~~~~~~y~vlli 415 (518)
...|-..+ ..-..-.|++.++ +.+.+.+.+...+|-- -|.-+++.|. +.+........-.+|++
T Consensus 160 l~~PC~~~~--~~c~p~f~f~~~L~LT~~~~~F~~~V~~~~iSgN~D~PEgG~DAimQaaV--C~~~IGWR~~a~rllv~ 235 (423)
T smart00187 160 LENPCPNYN--LTCEPPYGFKHVLSLTDDTDEFNEEVKKQRISGNLDAPEGGFDAIMQAAV--CTEQIGWREDARRLLVF 235 (423)
T ss_pred hcCCCcCCC--CCcCCCcceeeeccCCCCHHHHHHHHhhceeecCCcCCcccHHHHHHHHh--hccccccCCCceEEEEE
Confidence 01121100 0000112344433 5677777777777744 3666665442 22323344567789999
Q ss_pred EeCCCcC
Q 010107 416 ITDGVVT 422 (518)
Q Consensus 416 ltdG~i~ 422 (518)
.||+..+
T Consensus 236 ~TDa~fH 242 (423)
T smart00187 236 STDAGFH 242 (423)
T ss_pred EcCCCcc
Confidence 9997654
No 345
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=30.36 E-value=1.5e+02 Score=25.26 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=29.2
Q ss_pred EeeeccccCCCCCceee---eEEeeecc---CCCCccEEEEEEeecCCCCCcceEEEEEechhhhhcc
Q 010107 171 VCKTEVLKNETKPTWKS---VFLNIQQV---GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLH 232 (518)
Q Consensus 171 ~~kTevik~tlnP~W~e---f~~~~~~l---~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L~~~~ 232 (518)
.+.|.++. ..+|.++- +.+....+ --....+.+|++.-- ....+.+|.+++++.++.+..
T Consensus 12 tq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ll~~~ 77 (107)
T PF11618_consen 12 TQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPLLESN 77 (107)
T ss_dssp -EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH--
T ss_pred eeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhhhcCC
Confidence 45666666 78999885 33443322 002568999999866 344789999999999998643
No 346
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=28.75 E-value=1.9e+02 Score=30.83 Aligned_cols=129 Identities=19% Similarity=0.206 Sum_probs=71.5
Q ss_pred ceeeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhh-hcccccCCCCcceeeecccCCCCCceeEEecCCC
Q 010107 279 FELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGE-VLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGS 357 (518)
Q Consensus 279 ~~~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~-i~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~ 357 (518)
++.-+++-+|+|.| |--.|+--+-.|+-.++.- |+-.|--| .+.+..||.....-+++
T Consensus 462 t~aAvallvDtS~S------------M~~eGRw~PmKQtALALhHLv~TrfrGD-~l~~i~Fgr~A~~v~v~-------- 520 (652)
T COG4867 462 TQAAVALLVDTSFS------------MVMEGRWLPMKQTALALHHLVCTRFRGD-ALQIIAFGRYARTVTAA-------- 520 (652)
T ss_pred cccceeeeeeccHH------------HHHhccCCchHHHHHHHHHHHHhcCCCc-ceEEEeccchhcccCHH--------
Confidence 34456677787775 4433454444454445544 55667544 37778888641111110
Q ss_pred CCCCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEeCCCcCC--------------
Q 010107 358 NSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTD-------------- 423 (518)
Q Consensus 358 ~~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~i~d-------------- 423 (518)
++ ..++.|.. --||.++-+.-|-++-++ ++..-.++||+|||+.+-
T Consensus 521 ----------eL-----t~l~~v~e-qgTNlhhaL~LA~r~l~R----h~~~~~~il~vTDGePtAhle~~DG~~~~f~y 580 (652)
T COG4867 521 ----------EL-----TGLAGVYE-QGTNLHHALALAGRHLRR----HAGAQPVVLVVTDGEPTAHLEDGDGTSVFFDY 580 (652)
T ss_pred ----------HH-----hcCCCccc-cccchHHHHHHHHHHHHh----CcccCceEEEEeCCCccccccCCCCceEecCC
Confidence 10 11222211 237887777766665553 456677889999998631
Q ss_pred ------HHHHHHHHHHccCCCeEEEEEecCC
Q 010107 424 ------LQETKDALVKASDLPLSILIIGVGG 448 (518)
Q Consensus 424 ------~~~t~~~i~~as~lPlsiiiVGvG~ 448 (518)
|-.|...+-++.+..+-|-+.=+|.
T Consensus 581 p~DP~t~~~Tvr~~d~~~r~G~q~t~FrLg~ 611 (652)
T COG4867 581 PPDPRTIAHTVRGFDDMARLGAQVTIFRLGS 611 (652)
T ss_pred CCChhHHHHHHHHHHHHHhccceeeEEeecC
Confidence 2346666666666666555555554
No 347
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=28.21 E-value=1.4e+02 Score=31.25 Aligned_cols=118 Identities=20% Similarity=0.230 Sum_probs=70.2
Q ss_pred eeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEecCCCCCC
Q 010107 281 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSY 360 (518)
Q Consensus 281 ~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~ 360 (518)
-.+++=+|.|+| |+.. .+.|..-+.++ -+.+.. ..+|-||-... .+.|.+-
T Consensus 219 ~~lvvL~DVSGS------------m~~y--s~~~L~l~hAl---~q~~~R---~~~F~F~TRLt--~vT~~l~------- 269 (395)
T COG3552 219 PPLVVLCDVSGS------------MSGY--SRIFLHLLHAL---RQQRSR---VHVFLFGTRLT--RVTHMLR------- 269 (395)
T ss_pred CCeEEEEecccc------------hhhh--HHHHHHHHHHH---Hhcccc---eeEEEeechHH--HHHHHhc-------
Confidence 468889999997 5422 35565555554 444543 44999998721 1122221
Q ss_pred CcccChHHHHHHHHhhhcccee-cCCCChHHHHHHHHHH-HHhhhcccCCceEEEEEEeCC-CcCCHHHHHHHHHHccC
Q 010107 361 CEVEGIPGIMMAYTSALHNVNL-AGPTLFGPVISNAALI-AGQSLANHGQKYFVLLIITDG-VVTDLQETKDALVKASD 436 (518)
Q Consensus 361 ~~~~g~~~i~~~Y~~~~~~~~~-~gpt~f~pvi~~~~~~-a~~~~~~~~~~y~vlliltdG-~i~d~~~t~~~i~~as~ 436 (518)
..+.-+|.+.+...|.- +|-|-+++.+..-.+. ..+.. ..-.++||+||| +-+|..++..++..-+.
T Consensus 270 -----~rD~~~Al~~~~a~v~dw~ggTrig~tl~aF~~~~~~~~L----~~gA~VlilsDg~drd~~~~l~~~~~rl~r 339 (395)
T COG3552 270 -----ERDLEDALRRLSAQVKDWDGGTRIGNTLAAFLRRWHGNVL----SGGAVVLILSDGLDRDDIPELVTAMARLRR 339 (395)
T ss_pred -----cCCHHHHHHHHHhhcccccCCcchhHHHHHHHcccccccc----CCceEEEEEecccccCCchHHHHHHHHHHH
Confidence 12333445555555544 4778888887554443 22221 234678999999 56777887777776653
No 348
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=26.08 E-value=94 Score=32.23 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=54.6
Q ss_pred EEEeeeeeeCCCCCceeeEEEEEEE-----eCc--eeEEEEEEEEecCCcccccccccCccCcceeEEEEEecccc---c
Q 010107 15 EVGRTEVVLNSLNPTWITKHIITYQ-----FEV--VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQI---V 84 (518)
Q Consensus 15 ev~rTevi~~~lNP~f~~~f~~~~~-----fe~--~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~l---~ 84 (518)
++..|+.+..+-.|.|+..+..+.. --+ ..+|++++|-.|.. -++.+.+|.+.++|... -
T Consensus 29 ~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~----------~~~re~iGyv~LdLRsa~~~~ 98 (340)
T PF12416_consen 29 ESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS----------TGKRESIGYVVLDLRSAVVPQ 98 (340)
T ss_pred ceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC----------CCcceeccEEEEEcccccccc
Confidence 5788999999999999997766643 112 23899999999943 14789999999999998 3
Q ss_pred cc--cceeEEEeccC
Q 010107 85 TR--KNRSLTLDLVR 97 (518)
Q Consensus 85 ~~--~~~~~~~~L~~ 97 (518)
.. .....|.+|-+
T Consensus 99 ~~~~~~~~~W~~LL~ 113 (340)
T PF12416_consen 99 EKNQKQKPKWYKLLS 113 (340)
T ss_pred ccccccCCCeeEccc
Confidence 22 24567888844
No 349
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=25.49 E-value=3e+02 Score=28.29 Aligned_cols=147 Identities=18% Similarity=0.237 Sum_probs=85.2
Q ss_pred hhcccCceeeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhh-cccccCCCCcceeeecccCCCCCceeE
Q 010107 273 DYLAGGFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEV-LQVYDSDKRFPAWGFGARPIDGPVSHC 351 (518)
Q Consensus 273 dyi~~g~~~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i-~~~yd~d~~~~~~gFG~~~~~~~~~~~ 351 (518)
.-++-|.--++++.||+|.+ +--. +.++|..-..+..+... .+.||. +-+.-.|+=.. .++...-+
T Consensus 53 t~~r~GiiRhl~iviD~S~a---------m~e~--Df~P~r~a~~~K~le~Fv~eFFdQ-NPiSQigii~~-k~g~A~~l 119 (378)
T KOG2807|consen 53 TRIRKGIIRHLYIVIDCSRA---------MEEK--DFRPSRFANVIKYLEGFVPEFFDQ-NPISQIGIISI-KDGKADRL 119 (378)
T ss_pred chhhhhhheeEEEEEEhhhh---------hhhc--cCCchHHHHHHHHHHHHHHHHhcc-CchhheeEEEE-ecchhhHH
Confidence 45577888899999999985 2111 22578888888877774 455554 44555566332 23322223
Q ss_pred EecCCCCCCCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHhhhccc--CCceEEEEEE---eCCCcCCHHH
Q 010107 352 FNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANH--GQKYFVLLII---TDGVVTDLQE 426 (518)
Q Consensus 352 f~l~~~~~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~~~~~~--~~~y~vllil---tdG~i~d~~~ 426 (518)
=.|+||+ ... .++|+... .+--+ |-++.+.++|.+....- -..=-||+|+ +.-+..|.-+
T Consensus 120 t~ltgnp---~~h---------I~aL~~~~-~~~g~--fSLqNaLe~a~~~Lk~~p~H~sREVLii~sslsT~DPgdi~~ 184 (378)
T KOG2807|consen 120 TDLTGNP---RIH---------IHALKGLT-ECSGD--FSLQNALELAREVLKHMPGHVSREVLIIFSSLSTCDPGDIYE 184 (378)
T ss_pred HHhcCCH---HHH---------HHHHhccc-ccCCC--hHHHHHHHHHHHHhcCCCcccceEEEEEEeeecccCcccHHH
Confidence 3455542 222 34444444 12223 34677777777653111 1224577774 4556778899
Q ss_pred HHHHHHHccCCCeEEEEEecCCCc
Q 010107 427 TKDALVKASDLPLSILIIGVGGAD 450 (518)
Q Consensus 427 t~~~i~~as~lPlsiiiVGvG~~~ 450 (518)
|++.++.+ -|=+-+||+..+-
T Consensus 185 tI~~lk~~---kIRvsvIgLsaEv 205 (378)
T KOG2807|consen 185 TIDKLKAY---KIRVSVIGLSAEV 205 (378)
T ss_pred HHHHHHhh---CeEEEEEeechhH
Confidence 99999865 3556677876543
No 350
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=25.35 E-value=3.6e+02 Score=27.35 Aligned_cols=90 Identities=22% Similarity=0.273 Sum_probs=51.9
Q ss_pred CCCcccChHHHHHHHHhhhccceec-CCCCh-----HHHHHHHHHHHHhhhcccCCceEEEEEEeCCC-cCC-----HHH
Q 010107 359 SYCEVEGIPGIMMAYTSALHNVNLA-GPTLF-----GPVISNAALIAGQSLANHGQKYFVLLIITDGV-VTD-----LQE 426 (518)
Q Consensus 359 ~~~~~~g~~~i~~~Y~~~~~~~~~~-gpt~f-----~pvi~~~~~~a~~~~~~~~~~y~vlliltdG~-i~d-----~~~ 426 (518)
+.|.-.|+++++..-.+..+.+.+. -|+.+ ++-|-.+++.+.... ....|=|++|.=-|. +.| -++
T Consensus 21 Ts~~gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~--~~~~~Dviii~RGGGs~eDL~~FN~e~ 98 (319)
T PF02601_consen 21 TSPTGAAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMG--QADDFDVIIIIRGGGSIEDLWAFNDEE 98 (319)
T ss_pred eCCchHHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhcc--ccccccEEEEecCCCChHHhcccChHH
Confidence 3456678888888877766654433 23322 333444445444321 123566665555543 344 466
Q ss_pred HHHHHHHccCCCeEEEEEecCCC-cchhh
Q 010107 427 TKDALVKASDLPLSILIIGVGGA-DFKEM 454 (518)
Q Consensus 427 t~~~i~~as~lPlsiiiVGvG~~-~f~~m 454 (518)
..++|. +|.+| ||.|||-+ ||.-.
T Consensus 99 varai~-~~~~P---visaIGHe~D~ti~ 123 (319)
T PF02601_consen 99 VARAIA-ASPIP---VISAIGHETDFTIA 123 (319)
T ss_pred HHHHHH-hCCCC---EEEecCCCCCchHH
Confidence 777776 45688 89999975 65444
No 351
>KOG2737 consensus Putative metallopeptidase [General function prediction only]
Probab=25.16 E-value=56 Score=34.10 Aligned_cols=103 Identities=16% Similarity=0.216 Sum_probs=67.2
Q ss_pred EeeehhhhhhhhhcccCceeeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecc
Q 010107 262 KFSESVQYTFLDYLAGGFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGA 341 (518)
Q Consensus 262 ~~~~~~~~sFldyi~~g~~~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~d~~~~~~gFG~ 341 (518)
++++...+----|-+|||.---.-.|=.|+-|. .-|||-+.. .+|. +-+ .|+-.-++-.||
T Consensus 218 Eyq~eslF~hh~y~~GGcRh~sYtcIc~sG~ns-----~vLHYgha~-apNd---------~~i----qdgd~cLfDmGa 278 (492)
T KOG2737|consen 218 EYQLESLFLHHSYSYGGCRHLSYTCICASGDNS-----AVLHYGHAG-APND---------RTI----QDGDLCLFDMGA 278 (492)
T ss_pred HHhHHHHHHHhhhccCCccccccceeeecCCCc-----ceeeccccC-CCCC---------ccc----CCCCEEEEecCc
Confidence 344444444456888998854444555566543 579996644 5664 111 356677888898
Q ss_pred cCCCC---CceeEEecCCCCCCCcccChHHHHHHHHhhhccceecC
Q 010107 342 RPIDG---PVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAG 384 (518)
Q Consensus 342 ~~~~~---~~~~~f~l~~~~~~~~~~g~~~i~~~Y~~~~~~~~~~g 384 (518)
. +.. ...-|||-||..+...-.-++.|+++-+..+..++++-
T Consensus 279 e-y~~yaSDITcsFP~nGKFTadqk~VYnaVLda~navm~a~KpGv 323 (492)
T KOG2737|consen 279 E-YHFYASDITCSFPVNGKFTADQKLVYNAVLDASNAVMEAMKPGV 323 (492)
T ss_pred c-eeeeecccceeccCCCccchhHHHHHHHHHHHHHHHHHhcCCCC
Confidence 8 332 33448999999887777777888888777777776643
No 352
>COG5618 Predicted periplasmic lipoprotein [General function prediction only]
Probab=24.30 E-value=67 Score=29.69 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=15.6
Q ss_pred ccCceeeeeeCcccCCc
Q 010107 473 ASRDIVQFVPLKDVQNG 489 (518)
Q Consensus 473 ~~rD~v~Fv~~~~~~~~ 489 (518)
+.||-..||.|+||++-
T Consensus 132 aiRDa~~fiqFndFkNQ 148 (206)
T COG5618 132 AIRDALDFIQFNDFKNQ 148 (206)
T ss_pred eeccccceeehhhhhhH
Confidence 68999999999999975
No 353
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=23.48 E-value=6.7e+02 Score=24.15 Aligned_cols=163 Identities=9% Similarity=0.113 Sum_probs=84.6
Q ss_pred eEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccccc--CCCCcceeeecccC--C--CCCc--eeEEe
Q 010107 282 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYD--SDKRFPAWGFGARP--I--DGPV--SHCFN 353 (518)
Q Consensus 282 ~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd--~d~~~~~~gFG~~~--~--~~~~--~~~f~ 353 (518)
.+++.||.|.. .+. .+..+.++++|...|+... ++.++-+..|+... + .... .+..-
T Consensus 5 ~~vFvID~s~~-----------ai~----~~~l~~~~~sl~~~l~~lp~~~~~~igiITf~~~V~~~~~~~~~~~~~~~v 69 (239)
T cd01468 5 VFVFVIDVSYE-----------AIK----EGLLQALKESLLASLDLLPGDPRARVGLITYDSTVHFYNLSSDLAQPKMYV 69 (239)
T ss_pred EEEEEEEcchH-----------hcc----ccHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCeEEEEECCCCCCCCeEEE
Confidence 46888998773 122 3566777777777777655 77778888887652 1 1110 11111
Q ss_pred cCCCCCC---CcccC----hH---HHHHHHHhhhccce-----ecCCCChHHHHHHHHHHHHhhhcccCCceEEEEEEe-
Q 010107 354 LNGSNSY---CEVEG----IP---GIMMAYTSALHNVN-----LAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIIT- 417 (518)
Q Consensus 354 l~~~~~~---~~~~g----~~---~i~~~Y~~~~~~~~-----~~gpt~f~pvi~~~~~~a~~~~~~~~~~y~vllilt- 417 (518)
+. +.++ |...+ +. ..+...-+.++... -....++.+.|+-|....+... ..--|+++++
T Consensus 70 ~~-dl~d~f~p~~~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~----~gGkI~~f~sg 144 (239)
T cd01468 70 VS-DLKDVFLPLPDRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTF----AGGRIIVFQGG 144 (239)
T ss_pred eC-CCccCcCCCcCceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcC----CCceEEEEECC
Confidence 11 1222 22222 12 22222333333321 1234899999998888776431 1233444432
Q ss_pred -----CCCcCCH------------------HHH-HHHHHHccCCCeEEEEEecCC--CcchhhhhcccCCCcc
Q 010107 418 -----DGVVTDL------------------QET-KDALVKASDLPLSILIIGVGG--ADFKEMEILDADKGER 464 (518)
Q Consensus 418 -----dG~i~d~------------------~~t-~~~i~~as~lPlsiiiVGvG~--~~f~~m~~ld~d~~~~ 464 (518)
.|.+... .+. .+.-.+|++.-+|+=+...+. .+...|..|-...||.
T Consensus 145 ~pt~GpG~l~~~~~~~~~~~~~e~~~~~~a~~fY~~la~~~~~~~isvdlF~~~~~~~dl~~l~~l~~~TGG~ 217 (239)
T cd01468 145 LPTVGPGKLKSREDKEPIRSHDEAQLLKPATKFYKSLAKECVKSGICVDLFAFSLDYVDVATLKQLAKSTGGQ 217 (239)
T ss_pred CCCCCCCccccCcccccCCCccchhcccccHHHHHHHHHHHHHcCeEEEEEeccccccCHHHhhhhhhcCCce
Confidence 1223211 123 344455666777776666655 4777888777555444
No 354
>COG3060 MetJ Transcriptional regulator of met regulon [Transcription / Amino acid transport and metabolism]
Probab=23.43 E-value=64 Score=26.03 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhCCCCCCC
Q 010107 490 EISVVQALLAELPSQFLTYMRTRDIQPST 518 (518)
Q Consensus 490 ~~~l~~~~L~eiP~q~~~y~~~~~~~P~~ 518 (518)
++.|.++--.|||.+-.+-|+..||.|.+
T Consensus 74 d~dl~ker~deipe~ak~~mrelgidpe~ 102 (105)
T COG3060 74 DADLRKERSDEIPEAAKEIMRELGIDPET 102 (105)
T ss_pred cHHHHHhccccchHHHHHHHHHhCCCccc
Confidence 46677777789999999999999999964
No 355
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=23.34 E-value=2.6e+02 Score=23.37 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=40.6
Q ss_pred CCcEEEEEEEecCCceeeEeeeccccCCCCCceee-eEEeeeccCCCCccEEEEEEeecCCCCCcceEEEEEechhh
Q 010107 153 NDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADL 228 (518)
Q Consensus 153 sDPyv~i~~~~~~~~~~~~~kTevik~tlnP~W~e-f~~~~~~l~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~L 228 (518)
++..+.+.+-+ ..+.+|.-... .+..|++ |.+.+ +..+.|+|+||-.|- ..+-|-.-+-|++.
T Consensus 9 ~eV~avLklDn-----~~VgqT~Wk~~-s~q~WDQ~Fti~L----dRsRELEI~VywrD~---RslCav~~lrLEd~ 72 (98)
T cd08687 9 SEVSAVLKLDN-----TVVGQTQWKPK-SNQAWDQSFTLEL----ERSRELEIAVYWRDW---RSLCAVKFLKLEDE 72 (98)
T ss_pred cceEEEEEEcC-----eEEeecccccc-ccccccceeEEEe----ecccEEEEEEEEecc---hhhhhheeeEhhhh
Confidence 55556555532 34566654443 4778998 66665 358999999998764 34666666777774
No 356
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=23.16 E-value=1.1e+02 Score=28.14 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=32.6
Q ss_pred CCceeeEEEEEEEeC---ceeEEEEEEEEecCCcccccccccCccCcceeEEEEEeccc
Q 010107 27 NPTWITKHIITYQFE---VVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQ 82 (518)
Q Consensus 27 NP~f~~~f~~~~~fe---~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~iG~~~~~L~~ 82 (518)
.+.|++.+.|+.... +.-.|.|.||+......... ...-.++..||.+.++|=+
T Consensus 62 ~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~--~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 62 RVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGS--NKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred cccccceEECccchhcCChhHEEEEEEEEEecCCcccc--ccccccceEEEEEeEeeEc
Confidence 577999888775433 33489999999775310000 0000135688888887654
No 357
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=23.04 E-value=1.8e+02 Score=30.63 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=39.6
Q ss_pred HHHHHhhhcccCCceEEEEEEeCCCcC-------CHHHHHHHHHHccCCCeEEEEEecCCC--cchhhh
Q 010107 396 ALIAGQSLANHGQKYFVLLIITDGVVT-------DLQETKDALVKASDLPLSILIIGVGGA--DFKEME 455 (518)
Q Consensus 396 ~~~a~~~~~~~~~~y~vlliltdG~i~-------d~~~t~~~i~~as~lPlsiiiVGvG~~--~f~~m~ 455 (518)
+++|+... ..-.-=.|.|-++-|+-. ...++.+.+.+|+++|| |+.|-|+. |.+.|+
T Consensus 142 ~~wak~~V-~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPL--IL~gsg~~~kD~eVLe 207 (389)
T TIGR00381 142 AEWARKCV-KEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPI--VIGGSGNPEKDPLVLE 207 (389)
T ss_pred HHHHHHHH-HHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCE--EEeCCCCCcCCHHHHH
Confidence 35555443 122344677777777766 67789999999999999 77788764 777763
No 358
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.42 E-value=99 Score=34.62 Aligned_cols=44 Identities=20% Similarity=0.378 Sum_probs=32.3
Q ss_pred ceee-eEEeeecc-CCCCccEEEEEEeecCCCCCcceEEEEEechh
Q 010107 184 TWKS-VFLNIQQV-GSKDSPLIIECFNFNSNGKHDLIGKVQKSLAD 227 (518)
Q Consensus 184 ~W~e-f~~~~~~l-~~~~~~L~veV~D~d~~~~~d~IG~~~i~l~~ 227 (518)
.||+ ..+++..- -..+..+.+.+||+...++..|+|..++.+..
T Consensus 78 ~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 78 NWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred chhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence 4998 44444432 13467899999998888888999999887643
No 359
>KOG2414 consensus Putative Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=22.38 E-value=1.7e+02 Score=30.98 Aligned_cols=108 Identities=14% Similarity=0.255 Sum_probs=75.6
Q ss_pred hhhhh--cccCceeeEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCC
Q 010107 270 TFLDY--LAGGFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGP 347 (518)
Q Consensus 270 sFldy--i~~g~~~~~~~~iDft~sN~~~~~~~slH~~~~~~~~n~y~~ai~~i~~i~~~yd~d~~~~~~gFG~~~~~~~ 347 (518)
.+++| .++|++..-..-+=-+++|. ..+||...+ + .+.++. +-+.--|+. .++.
T Consensus 266 a~~eye~r~rGad~~AYpPVVAgG~na-----~tIHY~~Nn----q-------------~l~d~e-mVLvDaGce-lgGY 321 (488)
T KOG2414|consen 266 ALLEYECRRRGADRLAYPPVVAGGKNA-----NTIHYVRNN----Q-------------LLKDDE-MVLVDAGCE-LGGY 321 (488)
T ss_pred hhhhhheeecCccccccCCeeecCccc-----ceEEEeecc----c-------------ccCCCc-EEEEecCcc-cCce
Confidence 35554 45787765444443466654 589998744 1 112222 334445555 4443
Q ss_pred ---ceeEEecCCCCCCCcccChHHHHHHHHhhhccceecCCCChHHHHHHHHHHHHh
Q 010107 348 ---VSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQ 401 (518)
Q Consensus 348 ---~~~~f~l~~~~~~~~~~g~~~i~~~Y~~~~~~~~~~gpt~f~pvi~~~~~~a~~ 401 (518)
.+.|||.+|...+|.-.=++-|++.=+++++....++.+.++.+-+...+.-.+
T Consensus 322 vSDITRTWP~sGkFs~~Qr~LYeavL~vq~ecik~c~~~~g~sL~~l~~~s~~Ll~~ 378 (488)
T KOG2414|consen 322 VSDITRTWPISGKFSDAQRDLYEAVLQVQEECIKYCKPSNGTSLSQLFERSNELLGQ 378 (488)
T ss_pred EccceeccCCCCccCcHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH
Confidence 456999999999999999999999999999999999999999998887775443
Done!