BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010108
(518 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TGL|A Chain A, A Serine Protease Triad Forms The Catalytic Centre Of A
Triacylglycerol Lipase
Length = 269
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 16/113 (14%)
Query: 399 DTQVAIWRDSAWRRLVVAFRGTEQTSWKDLRTDLMLAPVGLNPERIGGDFKQEVQVHSGF 458
DT + R + + + + FRG+ +S ++ DL PV P + G +VH GF
Sbjct: 61 DTNAMVARGDSEKTIYIVFRGS--SSIRNWIADLTFVPVSYPP--VSG-----TKVHKGF 111
Query: 459 LSAYDSVXXXXXXXXXXXXGFKDDSAGPLDKWHVYVTGHSLGGALATLFALEL 511
L +Y V D + V VTGHSLGGA A L AL+L
Sbjct: 112 LDSYGEVQNELVATVL-------DQFKQYPSYKVAVTGHSLGGATALLCALDL 157
>pdb|4TGL|A Chain A, Catalysis At The Interface: The Anatomy Of A
Conformational Change In A Triglyceride Lipase
Length = 269
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 16/113 (14%)
Query: 399 DTQVAIWRDSAWRRLVVAFRGTEQTSWKDLRTDLMLAPVGLNPERIGGDFKQEVQVHSGF 458
DT + R + + + + FRG+ +S ++ DL PV P + G +VH GF
Sbjct: 61 DTNAMVARGDSEKTIYIVFRGS--SSIRNWIADLTFVPVSYPP--VSG-----TKVHKGF 111
Query: 459 LSAYDSVXXXXXXXXXXXXGFKDDSAGPLDKWHVYVTGHSLGGALATLFALEL 511
L +Y V D + V VTGHSLGGA A L AL+L
Sbjct: 112 LDSYGEVQNELVATVL-------DQFKQYPSYKVAVTGHSLGGATALLCALDL 157
>pdb|5TGL|A Chain A, A Model For Interfacial Activation In Lipases From The
Structure Of A Fungal Lipase-Inhibitor Complex
Length = 269
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 16/113 (14%)
Query: 399 DTQVAIWRDSAWRRLVVAFRGTEQTSWKDLRTDLMLAPVGLNPERIGGDFKQEVQVHSGF 458
DT + R + + + + FRG+ +S ++ DL PV P + G +VH GF
Sbjct: 61 DTNAMVARGDSEKTIYIVFRGS--SSIRNWIADLTFVPVSYPP--VSG-----TKVHKGF 111
Query: 459 LSAYDSVXXXXXXXXXXXXGFKDDSAGPLDKWHVYVTGHSLGGALATLFALEL 511
L +Y V D + V VTGHSLGGA A L AL+L
Sbjct: 112 LDSYGEVQNELVATVL-------DQFKQYPSYKVAVTGHSLGGATALLCALDL 157
>pdb|3TGL|A Chain A, Structure And Molecular Model Refinement Of Rhizomucor
Miehei Triacylglyceride Lipase: A Case Study Of The Use
Of Simulated Annealing In Partial Model Refinement
Length = 269
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 399 DTQVAIWRDSAWRRLVVAFRGTEQTSWKDLRTDLMLAPVGLNPERIGGDFKQEVQVHSGF 458
DT + R + + + + FRG+ +S ++ DL PV P + G +VH GF
Sbjct: 61 DTNAMVARGDSEKTIYIVFRGS--SSIRNWIADLTFVPVSYPP--VSG-----TKVHKGF 111
Query: 459 LSAYDSVXXXXXXXXXXXXGFKDDSAGPLDKWHVYVTGHSLGGALATLFALEL 511
L +Y V D + V VTGHSLGGA L AL+L
Sbjct: 112 LDSYGEVQNELVATVL-------DQFKQYPSYKVAVTGHSLGGATVLLCALDL 157
>pdb|1USW|A Chain A, Crystal Structure Of Ferulic Acid Esterase From
Aspergillus Niger
Length = 260
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Query: 395 NESTDTQVAIWRDSAWRRLVVAFRGTEQTSWKDLRTDLMLAPVGLNPERIGGDFKQEVQV 454
N TD I RD + ++ FRGT + L T+ L P P+ + +V
Sbjct: 43 NAQTDINGWILRDDTSKEIITVFRGTGSDTNLQLDTNYTLTPFDTLPQ------CNDCEV 96
Query: 455 HSGFLSAYDSVXXXXXXXXXXXXGFKDDSAGPLDKWHVYVTGHSLGGALATLFALELSSS 514
H G+ + SV D A + VTGHSLG ++A L A +LS++
Sbjct: 97 HGGYYIGWISVQDQVESLVKQQASQYPDYA-------LTVTGHSLGASMAALTAAQLSAT 149
>pdb|2HL6|A Chain A, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2HL6|B Chain B, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2IX9|A Chain A, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
pdb|2IX9|B Chain B, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
Length = 260
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Query: 395 NESTDTQVAIWRDSAWRRLVVAFRGTEQTSWKDLRTDLMLAPVGLNPERIGGDFKQEVQV 454
N TD I RD + ++ FRGT + L T+ L P P+ + +V
Sbjct: 43 NAQTDINGWILRDDTSKEIITVFRGTGSDTNLQLDTNYTLTPFDTLPQ------CNDCEV 96
Query: 455 HSGFLSAYDSVXXXXXXXXXXXXGFKDDSAGPLDKWHVYVTGHSLGGALATLFALELSSS 514
H G+ + SV D A + VTGHSLG ++A L A +LS++
Sbjct: 97 HGGYYIGWISVQDQVESLVKQQASQYPDYA-------LTVTGHSLGASMAALTAAQLSAT 149
>pdb|1UWC|A Chain A, Feruloyl Esterase From Aspergillus Niger
pdb|1UWC|B Chain B, Feruloyl Esterase From Aspergillus Niger
pdb|1UZA|A Chain A, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
pdb|1UZA|B Chain B, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
Length = 261
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Query: 395 NESTDTQVAIWRDSAWRRLVVAFRGTEQTSWKDLRTDLMLAPVGLNPERIGGDFKQEVQV 454
N TD I RD + ++ FRGT + L T+ L P P+ + +V
Sbjct: 43 NAQTDINGWILRDDTSKEIITVFRGTGSDTNLQLDTNYTLTPFDTLPQ------CNDCEV 96
Query: 455 HSGFLSAYDSVXXXXXXXXXXXXGFKDDSAGPLDKWHVYVTGHSLGGALATLFALELSSS 514
H G+ + SV D A + VTGHSLG ++A L A +LS++
Sbjct: 97 HGGYYIGWISVQDQVESLVKQQASQYPDYA-------LTVTGHSLGASMAALTAAQLSAT 149
>pdb|2BJH|A Chain A, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
pdb|2BJH|B Chain B, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
pdb|2BJH|C Chain C, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
Length = 260
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Query: 395 NESTDTQVAIWRDSAWRRLVVAFRGTEQTSWKDLRTDLMLAPVGLNPERIGGDFKQEVQV 454
N TD I RD + ++ FRGT + L T+ L P P+ + +V
Sbjct: 43 NAQTDINGWILRDDTSKEIITVFRGTGSDTNLQLDTNYTLTPFDTLPQ------CNDCEV 96
Query: 455 HSGFLSAYDSVXXXXXXXXXXXXGFKDDSAGPLDKWHVYVTGHSLGGALATLFALELSSS 514
H G+ + SV D A + VTGH+LG ++A L A +LS++
Sbjct: 97 HGGYYIGWISVQDQVESLVKQQASQYPDYA-------LTVTGHALGASMAALTAAQLSAT 149
>pdb|1TIC|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1TIC|B Chain B, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1LGY|A Chain A, Lipase Ii From Rhizopus Niveus
pdb|1LGY|B Chain B, Lipase Ii From Rhizopus Niveus
pdb|1LGY|C Chain C, Lipase Ii From Rhizopus Niveus
Length = 269
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 16/114 (14%)
Query: 398 TDTQVAIWRDSAWRRLVVAFRGTEQTSWKDLRTDLMLAPVGLNPERIGGDFKQEVQVHSG 457
+DT + R + + + FRGT S++ TD++ P + +VH+G
Sbjct: 61 SDTNGYVLRSDKQKTIYLVFRGTN--SFRSAITDIVFNFSDYKPVK-------GAKVHAG 111
Query: 458 FLSAYDSVXXXXXXXXXXXXGFKDDSAGPLDKWHVYVTGHSLGGALATLFALEL 511
FLS+Y+ V + +A P K V VTGHSLGGA A L ++L
Sbjct: 112 FLSSYEQVVNDYFPVVQ-----EQLTAHPTYK--VIVTGHSLGGAQALLAGMDL 158
>pdb|3O0D|A Chain A, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|B Chain B, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|C Chain C, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|D Chain D, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|E Chain E, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|F Chain F, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|G Chain G, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
Length = 301
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 16/111 (14%)
Query: 407 DSAWRRLVVAFRGTEQTSWKDLRTDLMLAPVGLNPERIGGDFKQ-----EVQVHSGFLSA 461
D A +++ + RGT S +D+ TD+ + L + + + VH+GF+ +
Sbjct: 75 DHASKQIYLVIRGTH--SLEDVITDIRIMQAPLTNFDLAANISSTATCDDCLVHNGFIQS 132
Query: 462 YDSVXXXXXXXXXXXXGFKDDSA-GPLDKWHVYVTGHSLGGALATLFALEL 511
Y++ G K DS + + VTGHSLGGA A LF + L
Sbjct: 133 YNNTYNQI--------GPKLDSVIEQYPDYQIAVTGHSLGGAAALLFGINL 175
>pdb|2YIJ|A Chain A, Crystal Structure Of Phospholipase A1
pdb|2YIJ|B Chain B, Crystal Structure Of Phospholipase A1
Length = 419
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 411 RRLVVAFRGTEQT-SW-KDLRTDLMLAPVGLNPERIGGDFKQEVQVHSGFLSAYDSVXXX 468
R +VV++RG+ Q W +D L+ N +I G+ +VQ+H G+ S Y S
Sbjct: 147 RDIVVSWRGSVQPLEWVEDFEFGLV------NAIKIFGERNDQVQIHQGWYSIYXSQDER 200
Query: 469 XXXXXXXXXGFKDDSAGPL------DKWHVYVTGHSLGGALATLFALEL 511
G L ++ + + GHSLG ALATL A ++
Sbjct: 201 SPFTKTNARDQVLREVGRLLEKYKDEEVSITICGHSLGAALATLSATDI 249
>pdb|2ORY|A Chain A, Crystal Structure Of M37 Lipase
pdb|2ORY|B Chain B, Crystal Structure Of M37 Lipase
Length = 346
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 479 FKDDSAGPLDKWHVYVTGHSLGGALATLFALELSSSQLAK 518
F ++ GP K + VTGHS GGAL++ AL L Q K
Sbjct: 155 FLNEKIGPEGKAKICVTGHSKGGALSSTLALWLKDIQGVK 194
>pdb|1DT3|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT3|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|E Chain E, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|F Chain F, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|G Chain G, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|H Chain H, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DU4|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1EIN|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1TIB|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|4DYH|A Chain A, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4DYH|B Chain B, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4EA6|A Chain A, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4EA6|B Chain B, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4FLF|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4FLF|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4GBG|A Chain A, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GBG|B Chain B, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GI1|A Chain A, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GI1|B Chain B, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GLB|A Chain A, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GLB|B Chain B, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GWL|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GWL|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GHW|A Chain A, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
pdb|4GHW|B Chain B, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
Length = 269
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 19/107 (17%)
Query: 407 DSAWRRLVVAFRGTEQT-SW-KDLRTDLMLAPVGLNPERIGGDFKQEVQVHSGFLSAYDS 464
D+ + +V++FRG+ +W +L DL + I D + H GF S++ S
Sbjct: 70 DNTNKLIVLSFRGSRSIENWIGNLNFDL---------KEIN-DICSGCRGHDGFTSSWRS 119
Query: 465 VXXXXXXXXXXXXGFKDDSAGPLDKWHVYVTGHSLGGALATLFALEL 511
V +D+ + V TGHSLGGALAT+ +L
Sbjct: 120 VADTLRQKV-------EDAVREHPDYRVVFTGHSLGGALATVAGADL 159
>pdb|1GT6|A Chain A, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
pdb|1GT6|B Chain B, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
Length = 269
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 19/107 (17%)
Query: 407 DSAWRRLVVAFRGTEQT-SW-KDLRTDLMLAPVGLNPERIGGDFKQEVQVHSGFLSAYDS 464
D+ + +V++FRG+ +W +L DL + I D + H GF S++ S
Sbjct: 70 DNTNKLIVLSFRGSRSIENWIGNLNFDL---------KEIN-DICSGCRGHDGFTSSWRS 119
Query: 465 VXXXXXXXXXXXXGFKDDSAGPLDKWHVYVTGHSLGGALATLFALEL 511
V +D+ + V TGH+LGGALAT+ +L
Sbjct: 120 VADTLRQKV-------EDAVREHPDYRVVFTGHALGGALATVAGADL 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.127 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,810,391
Number of Sequences: 62578
Number of extensions: 527116
Number of successful extensions: 1125
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1108
Number of HSP's gapped (non-prelim): 27
length of query: 518
length of database: 14,973,337
effective HSP length: 103
effective length of query: 415
effective length of database: 8,527,803
effective search space: 3539038245
effective search space used: 3539038245
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)