Query 010109
Match_columns 518
No_of_seqs 604 out of 4301
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 21:09:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02441 fa_ox_alpha_mit fatt 100.0 3.1E-98 7E-103 825.8 51.8 502 1-516 174-702 (737)
2 TIGR02437 FadB fatty oxidation 100.0 7.4E-97 2E-101 813.4 52.3 502 1-516 166-681 (714)
3 PRK11730 fadB multifunctional 100.0 5.7E-94 1.2E-98 792.6 52.2 502 1-516 166-681 (715)
4 TIGR02440 FadJ fatty oxidation 100.0 1.5E-93 3.2E-98 787.6 51.7 495 1-516 162-665 (699)
5 PRK11154 fadJ multifunctional 100.0 5.3E-93 1.2E-97 785.0 51.1 495 1-516 167-672 (708)
6 TIGR02279 PaaC-3OHAcCoADH 3-hy 100.0 3.8E-75 8.2E-80 617.1 36.0 368 146-516 4-467 (503)
7 PRK08268 3-hydroxy-acyl-CoA de 100.0 4.7E-73 1E-77 603.0 37.1 370 145-516 5-468 (507)
8 COG1250 FadB 3-hydroxyacyl-CoA 100.0 4.1E-72 8.9E-77 549.7 30.2 280 146-425 2-285 (307)
9 KOG2304 3-hydroxyacyl-CoA dehy 100.0 4.9E-71 1.1E-75 500.6 18.9 281 144-424 8-298 (298)
10 PRK07819 3-hydroxybutyryl-CoA 100.0 1E-64 2.2E-69 504.1 31.2 278 146-423 4-286 (286)
11 PRK08293 3-hydroxybutyryl-CoA 100.0 4.2E-60 9.1E-65 473.1 31.5 279 146-424 2-287 (287)
12 PRK09260 3-hydroxybutyryl-CoA 100.0 1.4E-59 3.1E-64 469.7 32.2 281 147-427 1-284 (288)
13 PRK05808 3-hydroxybutyryl-CoA 100.0 4E-59 8.6E-64 465.3 30.9 277 147-423 3-282 (282)
14 PRK06035 3-hydroxyacyl-CoA deh 100.0 6.5E-59 1.4E-63 465.6 31.3 278 146-423 2-290 (291)
15 PLN02545 3-hydroxybutyryl-CoA 100.0 1.6E-58 3.4E-63 463.9 32.6 282 146-427 3-287 (295)
16 PRK07530 3-hydroxybutyryl-CoA 100.0 3.8E-58 8.2E-63 460.5 32.0 281 146-426 3-286 (292)
17 PRK08269 3-hydroxybutyryl-CoA 100.0 2.6E-57 5.7E-62 455.3 30.6 268 158-425 1-284 (314)
18 PRK07066 3-hydroxybutyryl-CoA 100.0 6.8E-57 1.5E-61 450.3 26.2 277 145-425 5-298 (321)
19 KOG1683 Hydroxyacyl-CoA dehydr 100.0 6.3E-58 1.4E-62 446.0 17.4 344 158-516 1-350 (380)
20 PRK06130 3-hydroxybutyryl-CoA 100.0 4.4E-49 9.5E-54 398.6 31.0 277 146-427 3-286 (311)
21 PRK06129 3-hydroxyacyl-CoA deh 100.0 1.1E-41 2.4E-46 343.5 29.5 263 146-408 1-274 (308)
22 PF02737 3HCDH_N: 3-hydroxyacy 100.0 4.2E-41 9.1E-46 311.9 21.1 180 149-328 1-180 (180)
23 PRK07531 bifunctional 3-hydrox 100.0 8.5E-38 1.8E-42 333.6 26.9 243 146-392 3-253 (495)
24 KOG2305 3-hydroxyacyl-CoA dehy 100.0 9E-35 1.9E-39 264.5 15.1 229 147-378 3-242 (313)
25 PRK08268 3-hydroxy-acyl-CoA de 100.0 1.7E-29 3.6E-34 269.4 17.3 165 251-422 337-504 (507)
26 PF00725 3HCDH: 3-hydroxyacyl- 99.9 5.3E-27 1.1E-31 195.6 7.6 94 330-423 1-97 (97)
27 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.9 7.9E-23 1.7E-27 217.6 26.9 118 293-410 378-498 (503)
28 COG2084 MmsB 3-hydroxyisobutyr 99.8 1.1E-17 2.4E-22 163.5 19.1 186 148-362 1-207 (286)
29 TIGR01505 tartro_sem_red 2-hyd 99.7 3.8E-17 8.2E-22 163.8 17.3 187 149-365 1-209 (291)
30 PRK11559 garR tartronate semia 99.7 3.6E-16 7.9E-21 157.1 18.9 188 147-365 2-212 (296)
31 PRK07417 arogenate dehydrogena 99.7 3.9E-16 8.4E-21 155.4 16.1 155 148-327 1-167 (279)
32 PRK11199 tyrA bifunctional cho 99.6 5.2E-15 1.1E-19 152.9 17.6 171 146-357 97-277 (374)
33 KOG0409 Predicted dehydrogenas 99.6 1.8E-14 3.9E-19 138.4 18.6 188 146-362 34-242 (327)
34 PLN02688 pyrroline-5-carboxyla 99.6 4E-14 8.7E-19 140.1 20.4 186 148-362 1-202 (266)
35 PRK12491 pyrroline-5-carboxyla 99.6 1.8E-13 3.9E-18 135.4 19.9 189 148-362 3-205 (272)
36 PRK15461 NADH-dependent gamma- 99.6 1.3E-13 2.9E-18 138.3 18.7 187 148-362 2-207 (296)
37 PRK11880 pyrroline-5-carboxyla 99.5 3.3E-13 7.1E-18 133.6 19.5 188 147-362 2-203 (267)
38 PF03446 NAD_binding_2: NAD bi 99.5 4.2E-14 9.1E-19 129.3 12.0 146 147-325 1-160 (163)
39 PRK07679 pyrroline-5-carboxyla 99.5 2.7E-13 5.9E-18 135.0 17.9 189 147-362 3-207 (279)
40 TIGR02441 fa_ox_alpha_mit fatt 99.5 1.6E-14 3.4E-19 160.8 9.8 105 310-421 626-737 (737)
41 PRK06545 prephenate dehydrogen 99.5 1.5E-13 3.2E-18 141.7 16.3 176 148-345 1-195 (359)
42 PRK15059 tartronate semialdehy 99.5 4.6E-13 1E-17 133.9 18.4 186 148-362 1-205 (292)
43 TIGR01692 HIBADH 3-hydroxyisob 99.5 4.2E-13 9.2E-18 134.3 17.3 181 152-365 1-206 (288)
44 PRK08655 prephenate dehydrogen 99.5 1E-12 2.2E-17 138.5 18.8 161 148-333 1-170 (437)
45 PRK08507 prephenate dehydrogen 99.5 1.5E-12 3.2E-17 129.5 18.6 153 148-327 1-168 (275)
46 PLN02350 phosphogluconate dehy 99.5 2.1E-12 4.6E-17 136.6 19.5 190 146-362 5-225 (493)
47 TIGR00872 gnd_rel 6-phosphoglu 99.4 5.5E-12 1.2E-16 126.8 19.8 189 148-362 1-209 (298)
48 TIGR03026 NDP-sugDHase nucleot 99.4 2.2E-12 4.7E-17 135.6 17.6 204 148-362 1-244 (411)
49 PTZ00142 6-phosphogluconate de 99.4 6.9E-12 1.5E-16 132.5 20.0 188 148-362 2-219 (470)
50 PRK07502 cyclohexadienyl dehyd 99.4 3.3E-12 7.1E-17 129.1 16.5 157 146-326 5-178 (307)
51 COG0287 TyrA Prephenate dehydr 99.4 6.4E-12 1.4E-16 123.8 18.0 165 147-335 3-180 (279)
52 PRK09599 6-phosphogluconate de 99.4 1.1E-11 2.4E-16 124.9 19.7 182 148-362 1-211 (301)
53 COG0345 ProC Pyrroline-5-carbo 99.4 3.2E-12 6.9E-17 124.2 15.0 190 147-362 1-202 (266)
54 cd05297 GH4_alpha_glucosidase_ 99.4 2.7E-14 5.9E-19 149.9 0.6 158 148-321 1-184 (423)
55 PRK12490 6-phosphogluconate de 99.4 1.3E-11 2.9E-16 124.1 18.7 182 148-362 1-210 (299)
56 PRK11154 fadJ multifunctional 99.4 4.6E-13 9.9E-18 149.2 8.8 88 327-421 613-706 (708)
57 TIGR02440 FadJ fatty oxidation 99.4 4.7E-13 1E-17 148.7 8.8 88 327-421 606-699 (699)
58 PLN02256 arogenate dehydrogena 99.4 7.6E-12 1.7E-16 125.4 16.1 153 147-326 36-203 (304)
59 PRK11064 wecC UDP-N-acetyl-D-m 99.4 1.4E-11 3E-16 129.2 18.6 198 147-362 3-248 (415)
60 PRK15057 UDP-glucose 6-dehydro 99.4 2.8E-12 6.1E-17 132.9 12.9 199 148-362 1-233 (388)
61 PLN02858 fructose-bisphosphate 99.4 1.3E-11 2.8E-16 145.3 19.5 186 148-365 5-217 (1378)
62 PRK07680 late competence prote 99.4 2.6E-11 5.6E-16 120.5 18.6 152 148-326 1-158 (273)
63 PRK12557 H(2)-dependent methyl 99.4 5.3E-11 1.2E-15 121.0 20.2 205 159-386 32-260 (342)
64 PRK00094 gpsA NAD(P)H-dependen 99.4 3.1E-11 6.8E-16 122.9 18.6 198 147-360 1-238 (325)
65 PRK05479 ketol-acid reductoiso 99.4 2.9E-11 6.3E-16 121.4 17.4 185 148-358 18-225 (330)
66 PRK06928 pyrroline-5-carboxyla 99.3 2.1E-11 4.5E-16 121.3 15.4 153 147-324 1-160 (277)
67 PLN02858 fructose-bisphosphate 99.3 2.9E-11 6.3E-16 142.4 18.1 191 146-365 323-537 (1378)
68 TIGR00873 gnd 6-phosphoglucona 99.3 3.7E-11 8.1E-16 127.0 17.0 190 149-362 1-216 (467)
69 PRK06476 pyrroline-5-carboxyla 99.3 1E-10 2.2E-15 115.2 18.5 181 148-362 1-194 (258)
70 TIGR00465 ilvC ketol-acid redu 99.3 1.1E-10 2.4E-15 117.4 17.1 205 148-381 4-232 (314)
71 PRK15182 Vi polysaccharide bio 99.3 1.8E-10 4E-15 120.8 18.6 197 148-362 7-244 (425)
72 PRK07634 pyrroline-5-carboxyla 99.3 2.3E-10 5E-15 111.7 17.8 189 147-362 4-207 (245)
73 PRK08818 prephenate dehydrogen 99.2 6.2E-11 1.3E-15 121.3 13.3 147 148-336 5-165 (370)
74 PLN02600 enoyl-CoA hydratase 99.2 3E-11 6.6E-16 118.3 10.1 96 1-132 152-247 (251)
75 PRK08150 enoyl-CoA hydratase; 99.2 3.3E-11 7.1E-16 118.3 10.2 97 1-133 156-252 (255)
76 PTZ00082 L-lactate dehydrogena 99.2 1.9E-11 4.1E-16 123.6 8.6 126 147-284 6-153 (321)
77 PRK11730 fadB multifunctional 99.2 1.7E-11 3.7E-16 136.7 8.9 85 329-421 624-714 (715)
78 PRK12478 enoyl-CoA hydratase; 99.2 2.4E-11 5.2E-16 121.8 9.0 97 1-133 173-278 (298)
79 PLN02888 enoyl-CoA hydratase 99.2 4.1E-11 8.8E-16 118.3 10.3 99 1-135 163-263 (265)
80 KOG1680 Enoyl-CoA hydratase [L 99.2 2.2E-11 4.8E-16 115.7 8.0 97 1-133 191-287 (290)
81 PRK08138 enoyl-CoA hydratase; 99.2 4.8E-11 1.1E-15 117.6 10.4 96 1-132 162-257 (261)
82 PRK05862 enoyl-CoA hydratase; 99.2 4E-11 8.7E-16 117.9 9.8 96 1-132 158-253 (257)
83 PRK07658 enoyl-CoA hydratase; 99.2 5E-11 1.1E-15 117.3 10.3 96 1-132 158-253 (257)
84 TIGR02280 PaaB1 phenylacetate 99.2 4.7E-11 1E-15 117.4 9.9 96 1-132 157-252 (256)
85 PRK05980 enoyl-CoA hydratase; 99.2 4.2E-11 9.1E-16 118.0 9.4 96 1-132 164-259 (260)
86 PRK14806 bifunctional cyclohex 99.2 4E-10 8.6E-15 127.3 18.4 156 147-326 3-176 (735)
87 TIGR01915 npdG NADPH-dependent 99.2 2.9E-10 6.2E-15 109.2 14.7 163 148-327 1-189 (219)
88 PRK08139 enoyl-CoA hydratase; 99.2 5.6E-11 1.2E-15 117.4 9.8 96 1-132 167-262 (266)
89 PRK07938 enoyl-CoA hydratase; 99.2 4.1E-11 8.9E-16 117.2 8.6 95 1-131 155-249 (249)
90 PRK08258 enoyl-CoA hydratase; 99.2 5.9E-11 1.3E-15 118.0 9.8 97 1-133 178-274 (277)
91 PRK14618 NAD(P)H-dependent gly 99.2 2.9E-10 6.3E-15 116.0 15.1 162 147-327 4-178 (328)
92 PRK14619 NAD(P)H-dependent gly 99.2 1.6E-10 3.4E-15 116.9 12.7 141 148-330 5-158 (308)
93 TIGR02437 FadB fatty oxidation 99.2 3.8E-11 8.2E-16 133.7 8.8 85 329-421 624-714 (714)
94 cd01339 LDH-like_MDH L-lactate 99.2 3.9E-11 8.4E-16 120.8 8.1 122 150-283 1-139 (300)
95 PRK07799 enoyl-CoA hydratase; 99.2 8.3E-11 1.8E-15 116.1 9.9 96 1-132 164-259 (263)
96 PRK05809 3-hydroxybutyryl-CoA 99.2 8.2E-11 1.8E-15 116.0 9.9 96 1-132 161-256 (260)
97 PRK08140 enoyl-CoA hydratase; 99.2 8.7E-11 1.9E-15 115.9 10.0 96 1-132 163-258 (262)
98 PRK06143 enoyl-CoA hydratase; 99.2 7.8E-11 1.7E-15 115.7 9.5 94 1-130 163-256 (256)
99 PLN03214 probable enoyl-CoA hy 99.2 7.2E-11 1.6E-15 117.3 9.3 100 1-136 172-271 (278)
100 PRK06495 enoyl-CoA hydratase; 99.2 8.6E-11 1.9E-15 115.6 9.4 96 1-132 158-253 (257)
101 PRK06127 enoyl-CoA hydratase; 99.2 1.1E-10 2.4E-15 115.6 10.1 96 1-132 170-265 (269)
102 PRK09076 enoyl-CoA hydratase; 99.2 1.2E-10 2.6E-15 114.6 10.2 96 1-132 159-254 (258)
103 PRK09674 enoyl-CoA hydratase-i 99.2 1.2E-10 2.6E-15 114.4 10.2 96 1-132 156-251 (255)
104 PRK06563 enoyl-CoA hydratase; 99.2 1.1E-10 2.3E-15 114.8 9.7 96 1-132 156-251 (255)
105 PRK08252 enoyl-CoA hydratase; 99.2 1.1E-10 2.3E-15 114.7 9.5 96 1-132 155-250 (254)
106 PRK05981 enoyl-CoA hydratase; 99.2 1.2E-10 2.5E-15 115.3 9.5 96 1-132 167-262 (266)
107 PRK07657 enoyl-CoA hydratase; 99.1 1.7E-10 3.7E-15 113.7 10.1 96 1-132 161-256 (260)
108 PRK07468 enoyl-CoA hydratase; 99.1 1.7E-10 3.6E-15 113.9 9.9 96 1-132 163-258 (262)
109 PRK07511 enoyl-CoA hydratase; 99.1 1.4E-10 3.1E-15 114.3 9.4 96 1-132 162-257 (260)
110 PRK06223 malate dehydrogenase; 99.1 1.3E-10 2.8E-15 117.4 9.2 125 147-283 2-143 (307)
111 PRK08229 2-dehydropantoate 2-r 99.1 7.1E-10 1.5E-14 113.8 14.8 167 147-330 2-180 (341)
112 PRK09245 enoyl-CoA hydratase; 99.1 1.9E-10 4E-15 113.9 10.0 96 1-132 167-262 (266)
113 PRK05995 enoyl-CoA hydratase; 99.1 1.8E-10 3.9E-15 113.7 9.9 96 1-132 162-258 (262)
114 PTZ00117 malate dehydrogenase; 99.1 1.1E-10 2.3E-15 118.3 8.4 125 148-284 6-147 (319)
115 PLN02712 arogenate dehydrogena 99.1 8E-10 1.7E-14 121.9 15.9 154 146-326 368-536 (667)
116 PRK06210 enoyl-CoA hydratase; 99.1 1.5E-10 3.2E-15 114.9 9.2 97 1-132 172-268 (272)
117 PTZ00431 pyrroline carboxylate 99.1 7E-10 1.5E-14 109.3 13.6 182 148-362 4-198 (260)
118 PRK06142 enoyl-CoA hydratase; 99.1 1.7E-10 3.7E-15 114.5 9.2 96 1-132 173-269 (272)
119 PRK06494 enoyl-CoA hydratase; 99.1 1.9E-10 4.2E-15 113.2 9.5 96 1-132 158-255 (259)
120 COG1004 Ugd Predicted UDP-gluc 99.1 2.9E-09 6.3E-14 107.0 17.8 202 148-361 1-241 (414)
121 PLN02664 enoyl-CoA hydratase/d 99.1 2.2E-10 4.7E-15 113.8 9.9 96 1-132 175-271 (275)
122 TIGR01724 hmd_rel H2-forming N 99.1 1.3E-09 2.8E-14 107.1 14.8 148 159-326 32-193 (341)
123 PRK06688 enoyl-CoA hydratase; 99.1 2.2E-10 4.8E-15 112.9 9.5 96 1-132 160-255 (259)
124 COG2085 Predicted dinucleotide 99.1 3.1E-09 6.6E-14 98.7 15.6 153 147-327 1-180 (211)
125 PRK08259 enoyl-CoA hydratase; 99.1 3E-10 6.4E-15 111.5 9.4 93 1-130 157-249 (254)
126 PRK03580 carnitinyl-CoA dehydr 99.1 2.5E-10 5.5E-15 112.5 8.9 96 1-132 158-257 (261)
127 PRK08184 benzoyl-CoA-dihydrodi 99.1 1.4E-10 3.1E-15 124.5 7.5 96 2-133 446-545 (550)
128 PRK07659 enoyl-CoA hydratase; 99.1 2.8E-10 6E-15 112.2 9.0 95 1-132 162-256 (260)
129 TIGR03222 benzo_boxC benzoyl-C 99.1 1.3E-10 2.8E-15 124.4 7.1 97 1-133 441-541 (546)
130 COG0240 GpsA Glycerol-3-phosph 99.1 5.8E-10 1.3E-14 110.5 10.5 166 148-330 2-181 (329)
131 PRK05674 gamma-carboxygeranoyl 99.1 3.6E-10 7.9E-15 111.6 8.9 96 1-132 164-260 (265)
132 PRK07260 enoyl-CoA hydratase; 99.1 4.5E-10 9.7E-15 110.4 9.5 94 1-130 162-255 (255)
133 KOG2304 3-hydroxyacyl-CoA dehy 99.1 8.2E-11 1.8E-15 108.4 3.1 51 463-515 201-251 (298)
134 TIGR01929 menB naphthoate synt 99.0 4.2E-10 9.1E-15 110.8 8.3 95 1-132 161-255 (259)
135 PF01210 NAD_Gly3P_dh_N: NAD-d 99.0 2.9E-10 6.3E-15 103.2 6.6 105 149-265 1-106 (157)
136 PF02153 PDH: Prephenate dehyd 99.0 2.8E-09 6.1E-14 104.9 14.1 141 162-326 1-157 (258)
137 PRK07396 dihydroxynaphthoic ac 99.0 6.7E-10 1.5E-14 110.2 9.4 96 1-133 171-266 (273)
138 PRK11423 methylmalonyl-CoA dec 99.0 7.6E-10 1.6E-14 109.1 9.4 96 1-132 160-257 (261)
139 COG0677 WecC UDP-N-acetyl-D-ma 99.0 2.8E-08 6.1E-13 99.6 20.1 201 148-362 10-252 (436)
140 PRK05864 enoyl-CoA hydratase; 99.0 9.7E-10 2.1E-14 109.2 9.8 96 1-132 174-271 (276)
141 PRK09120 p-hydroxycinnamoyl Co 99.0 9.5E-10 2.1E-14 109.2 9.6 94 1-130 168-264 (275)
142 PLN02921 naphthoate synthase 99.0 1.3E-09 2.8E-14 110.4 9.5 96 1-133 225-320 (327)
143 PLN02712 arogenate dehydrogena 99.0 1.4E-08 3E-13 112.1 18.2 153 147-326 52-219 (667)
144 TIGR03210 badI 2-ketocyclohexa 99.0 1.5E-09 3.2E-14 106.7 9.0 95 1-132 158-252 (256)
145 PRK08321 naphthoate synthase; 99.0 1.4E-09 3E-14 109.4 9.0 96 1-133 200-295 (302)
146 PF03807 F420_oxidored: NADP o 99.0 1.8E-09 3.8E-14 89.5 7.8 91 149-263 1-95 (96)
147 PLN02353 probable UDP-glucose 99.0 2.9E-08 6.2E-13 105.3 18.6 204 147-362 1-252 (473)
148 PRK06144 enoyl-CoA hydratase; 99.0 2E-09 4.3E-14 106.2 9.2 92 1-132 167-258 (262)
149 PF03721 UDPG_MGDP_dh_N: UDP-g 99.0 3.3E-09 7.1E-14 98.8 10.1 109 148-269 1-126 (185)
150 PRK06023 enoyl-CoA hydratase; 98.9 2.2E-09 4.7E-14 105.3 8.7 91 1-128 161-251 (251)
151 PF00378 ECH: Enoyl-CoA hydrat 98.9 1.7E-09 3.7E-14 105.7 7.6 92 1-128 154-245 (245)
152 PRK08260 enoyl-CoA hydratase; 98.9 3.2E-09 6.9E-14 106.6 9.7 99 1-134 177-276 (296)
153 PRK05870 enoyl-CoA hydratase; 98.9 2E-09 4.4E-14 105.3 7.6 90 1-128 159-249 (249)
154 PRK12439 NAD(P)H-dependent gly 98.9 2.4E-08 5.2E-13 102.3 15.7 170 145-332 5-189 (341)
155 PF10727 Rossmann-like: Rossma 98.9 7.5E-09 1.6E-13 89.8 10.0 115 147-285 10-127 (127)
156 PRK06072 enoyl-CoA hydratase; 98.9 4.4E-09 9.6E-14 102.9 9.7 93 1-132 152-244 (248)
157 PRK09287 6-phosphogluconate de 98.9 4.1E-08 9E-13 103.6 17.6 177 158-362 1-208 (459)
158 PRK07509 enoyl-CoA hydratase; 98.9 3.9E-09 8.3E-14 104.2 8.9 94 1-132 166-259 (262)
159 PRK07327 enoyl-CoA hydratase; 98.9 4.7E-09 1E-13 103.9 8.8 93 1-133 170-265 (268)
160 TIGR03189 dienoyl_CoA_hyt cycl 98.9 8.8E-09 1.9E-13 100.9 10.0 94 1-132 152-247 (251)
161 PRK07112 polyketide biosynthes 98.9 7.2E-09 1.6E-13 101.8 8.9 93 1-132 159-251 (255)
162 PRK12921 2-dehydropantoate 2-r 98.9 6E-08 1.3E-12 97.8 15.6 167 148-330 1-180 (305)
163 PRK05617 3-hydroxyisobutyryl-C 98.9 4.1E-09 9E-14 107.7 7.1 130 1-131 163-321 (342)
164 PF00725 3HCDH: 3-hydroxyacyl- 98.8 1E-09 2.2E-14 91.2 2.1 51 464-516 3-53 (97)
165 PRK07827 enoyl-CoA hydratase; 98.8 9.7E-09 2.1E-13 101.2 8.9 93 1-131 164-256 (260)
166 PRK07110 polyketide biosynthes 98.8 1.5E-08 3.2E-13 99.3 9.3 90 1-126 158-247 (249)
167 PRK07854 enoyl-CoA hydratase; 98.8 1.6E-08 3.5E-13 98.6 9.3 90 1-132 150-239 (243)
168 PRK14620 NAD(P)H-dependent gly 98.8 5.8E-08 1.3E-12 99.0 13.3 167 148-333 1-185 (326)
169 TIGR01763 MalateDH_bact malate 98.8 1.2E-08 2.7E-13 102.6 8.2 102 148-262 2-118 (305)
170 COG0362 Gnd 6-phosphogluconate 98.8 3.6E-07 7.8E-12 91.4 17.9 194 148-365 4-223 (473)
171 PRK06522 2-dehydropantoate 2-r 98.8 1.3E-07 2.7E-12 95.4 14.7 163 148-327 1-174 (304)
172 PRK06190 enoyl-CoA hydratase; 98.8 3E-08 6.5E-13 97.5 9.3 93 1-129 158-253 (258)
173 PRK06444 prephenate dehydrogen 98.7 1.6E-07 3.4E-12 88.1 13.2 114 148-326 1-120 (197)
174 COG1023 Gnd Predicted 6-phosph 98.7 7.1E-07 1.5E-11 83.6 17.1 187 148-362 1-210 (300)
175 cd00650 LDH_MDH_like NAD-depen 98.7 2.9E-08 6.3E-13 98.0 8.5 97 150-260 1-117 (263)
176 PLN02874 3-hydroxyisobutyryl-C 98.7 9.1E-09 2E-13 106.5 5.1 131 1-132 168-335 (379)
177 COG1024 CaiD Enoyl-CoA hydrata 98.7 5.5E-08 1.2E-12 95.7 9.4 93 1-131 162-255 (257)
178 TIGR03376 glycerol3P_DH glycer 98.7 1.7E-07 3.7E-12 95.4 13.2 165 149-330 1-197 (342)
179 PRK06249 2-dehydropantoate 2-r 98.7 2E-07 4.2E-12 94.6 13.0 172 147-334 5-193 (313)
180 TIGR02354 thiF_fam2 thiamine b 98.7 5.7E-08 1.2E-12 91.6 7.6 105 148-260 22-143 (200)
181 PTZ00345 glycerol-3-phosphate 98.7 1.9E-07 4.2E-12 95.7 11.8 168 148-330 12-206 (365)
182 TIGR00112 proC pyrroline-5-car 98.6 1.2E-06 2.5E-11 85.6 16.7 167 170-362 9-185 (245)
183 COG0447 MenB Dihydroxynaphthoi 98.6 4.2E-08 9E-13 89.9 4.2 91 2-133 181-275 (282)
184 PRK12480 D-lactate dehydrogena 98.6 2.4E-07 5.3E-12 94.2 10.0 100 148-275 147-249 (330)
185 PRK05808 3-hydroxybutyryl-CoA 98.5 1E-07 2.3E-12 95.1 5.1 55 460-516 184-238 (282)
186 PF00056 Ldh_1_N: lactate/mala 98.5 8.2E-07 1.8E-11 79.0 10.3 104 148-265 1-121 (141)
187 KOG1679 Enoyl-CoA hydratase [L 98.5 1.5E-07 3.2E-12 86.1 4.7 96 1-132 188-287 (291)
188 COG1893 ApbA Ketopantoate redu 98.4 1E-05 2.3E-10 81.4 17.4 166 148-327 1-176 (307)
189 KOG1682 Enoyl-CoA isomerase [L 98.4 6E-07 1.3E-11 81.5 7.4 96 1-132 188-283 (287)
190 PRK08290 enoyl-CoA hydratase; 98.4 4.5E-07 9.7E-12 90.6 7.2 81 1-117 180-262 (288)
191 cd05291 HicDH_like L-2-hydroxy 98.4 9.3E-07 2E-11 89.3 8.2 101 148-262 1-117 (306)
192 COG4007 Predicted dehydrogenas 98.4 1.1E-05 2.4E-10 76.3 14.4 147 159-326 33-194 (340)
193 PRK09260 3-hydroxybutyryl-CoA 98.4 2.1E-07 4.6E-12 93.1 3.4 52 463-516 186-237 (288)
194 COG1250 FadB 3-hydroxyacyl-CoA 98.4 1.7E-07 3.6E-12 93.2 2.6 51 463-515 187-237 (307)
195 PRK08293 3-hydroxybutyryl-CoA 98.4 2E-07 4.3E-12 93.3 2.9 54 461-516 188-241 (287)
196 PRK05708 2-dehydropantoate 2-r 98.4 4E-06 8.6E-11 84.7 12.4 176 148-338 3-187 (305)
197 PRK07819 3-hydroxybutyryl-CoA 98.4 2E-07 4.4E-12 93.1 3.0 52 463-516 191-242 (286)
198 PRK13403 ketol-acid reductoiso 98.3 3.8E-06 8.2E-11 83.6 11.3 178 148-356 17-221 (335)
199 PRK06213 enoyl-CoA hydratase; 98.3 5.2E-07 1.1E-11 87.2 4.9 73 1-109 156-228 (229)
200 PRK15076 alpha-galactosidase; 98.3 2.4E-06 5.2E-11 90.0 10.1 77 147-235 1-84 (431)
201 KOG1683 Hydroxyacyl-CoA dehydr 98.3 2.3E-07 5E-12 92.2 2.2 77 329-410 293-375 (380)
202 PRK06035 3-hydroxyacyl-CoA deh 98.3 3.2E-07 6.8E-12 92.1 3.0 51 464-516 191-241 (291)
203 PRK13243 glyoxylate reductase; 98.3 3.9E-06 8.4E-11 85.6 10.7 101 148-275 151-255 (333)
204 cd01065 NAD_bind_Shikimate_DH 98.3 1.5E-06 3.3E-11 78.4 6.9 118 148-285 20-140 (155)
205 cd05293 LDH_1 A subgroup of L- 98.3 1.9E-06 4.1E-11 86.9 8.2 98 148-259 4-117 (312)
206 PF07991 IlvN: Acetohydroxy ac 98.3 1.2E-05 2.6E-10 71.8 11.6 93 148-267 5-99 (165)
207 PRK08788 enoyl-CoA hydratase; 98.3 3.4E-06 7.5E-11 84.0 9.2 90 1-127 185-275 (287)
208 PLN02157 3-hydroxyisobutyryl-C 98.3 1.6E-06 3.5E-11 90.0 6.9 88 1-126 196-283 (401)
209 KOG3124 Pyrroline-5-carboxylat 98.2 6.7E-06 1.5E-10 78.2 10.0 151 148-322 1-156 (267)
210 cd05292 LDH_2 A subgroup of L- 98.2 4.3E-06 9.2E-11 84.5 8.7 97 148-258 1-113 (308)
211 PLN02545 3-hydroxybutyryl-CoA 98.2 8.3E-07 1.8E-11 89.2 3.2 54 461-516 186-239 (295)
212 PLN02602 lactate dehydrogenase 98.2 4.2E-06 9E-11 85.6 8.3 94 148-256 38-149 (350)
213 PRK07530 3-hydroxybutyryl-CoA 98.2 9E-07 2E-11 88.8 3.4 52 463-516 188-239 (292)
214 PRK08272 enoyl-CoA hydratase; 98.1 4.2E-06 9E-11 84.4 7.0 42 1-42 188-229 (302)
215 PRK07574 formate dehydrogenase 98.1 2.1E-05 4.6E-10 81.3 12.3 103 148-275 193-299 (385)
216 PRK00066 ldh L-lactate dehydro 98.1 5.2E-06 1.1E-10 84.0 7.6 97 148-259 7-119 (315)
217 PRK08605 D-lactate dehydrogena 98.1 5.2E-06 1.1E-10 84.7 7.6 99 148-274 147-250 (332)
218 PRK15469 ghrA bifunctional gly 98.1 1.3E-05 2.7E-10 81.0 10.0 101 148-275 137-241 (312)
219 cd00300 LDH_like L-lactate deh 98.1 7.3E-06 1.6E-10 82.5 8.0 99 150-262 1-115 (300)
220 PLN03139 formate dehydrogenase 98.1 3.5E-05 7.6E-10 79.7 13.1 103 148-275 200-306 (386)
221 cd05294 LDH-like_MDH_nadp A la 98.1 1E-05 2.2E-10 81.8 8.8 123 148-283 1-145 (309)
222 PRK06436 glycerate dehydrogena 98.1 1.5E-05 3.4E-10 79.9 9.1 123 148-300 123-255 (303)
223 PRK07066 3-hydroxybutyryl-CoA 98.0 2.4E-06 5.2E-11 86.2 2.7 52 462-515 188-242 (321)
224 PF02558 ApbA: Ketopantoate re 98.0 6.8E-06 1.5E-10 73.8 5.1 113 150-276 1-116 (151)
225 COG0111 SerA Phosphoglycerate 98.0 3.6E-05 7.9E-10 77.9 10.8 102 148-276 143-249 (324)
226 COG0039 Mdh Malate/lactate deh 98.0 1.8E-05 3.9E-10 78.9 8.3 105 148-265 1-121 (313)
227 TIGR01327 PGDH D-3-phosphoglyc 98.0 5.3E-05 1.2E-09 82.1 11.7 102 148-275 139-244 (525)
228 PF02826 2-Hacid_dh_C: D-isome 97.9 1.2E-05 2.6E-10 74.6 5.6 103 148-275 37-142 (178)
229 PLN02928 oxidoreductase family 97.9 6E-05 1.3E-09 77.3 11.2 115 148-275 160-277 (347)
230 cd05290 LDH_3 A subgroup of L- 97.9 2.3E-05 5E-10 78.9 7.9 74 149-234 1-76 (307)
231 KOG2380 Prephenate dehydrogena 97.9 0.00022 4.7E-09 70.4 13.6 152 148-326 53-219 (480)
232 PRK05442 malate dehydrogenase; 97.9 2.3E-05 4.9E-10 79.5 7.1 104 147-265 4-133 (326)
233 PRK13581 D-3-phosphoglycerate 97.9 6.4E-05 1.4E-09 81.5 10.7 101 148-275 141-245 (526)
234 TIGR01759 MalateDH-SF1 malate 97.9 3.5E-05 7.5E-10 78.1 7.5 103 148-265 4-132 (323)
235 PF00670 AdoHcyase_NAD: S-aden 97.9 6.9E-05 1.5E-09 67.4 8.5 98 148-273 24-124 (162)
236 cd01487 E1_ThiF_like E1_ThiF_l 97.9 6.2E-05 1.3E-09 69.5 8.5 95 149-251 1-112 (174)
237 PLN00112 malate dehydrogenase 97.9 0.00011 2.3E-09 77.1 11.2 105 147-265 100-229 (444)
238 TIGR02853 spore_dpaA dipicolin 97.8 4.2E-05 9.1E-10 76.3 7.8 89 148-263 152-241 (287)
239 PRK05869 enoyl-CoA hydratase; 97.8 2E-05 4.3E-10 75.8 5.2 42 1-42 163-204 (222)
240 KOG2653 6-phosphogluconate deh 97.8 0.00037 7.9E-09 69.1 13.3 195 146-364 5-226 (487)
241 KOG2711 Glycerol-3-phosphate d 97.8 8.1E-05 1.8E-09 73.6 8.6 181 145-330 19-219 (372)
242 cd01337 MDH_glyoxysomal_mitoch 97.8 8E-05 1.7E-09 74.9 8.6 99 148-265 1-120 (310)
243 KOG1681 Enoyl-CoA isomerase [L 97.7 6.7E-05 1.5E-09 69.7 6.4 93 2-130 192-285 (292)
244 TIGR01757 Malate-DH_plant mala 97.7 0.00017 3.7E-09 74.4 10.0 102 148-263 45-171 (387)
245 TIGR01772 MDH_euk_gproteo mala 97.7 6.8E-05 1.5E-09 75.6 6.8 99 149-266 1-120 (312)
246 PRK14194 bifunctional 5,10-met 97.7 6.5E-05 1.4E-09 74.6 6.5 71 148-262 160-231 (301)
247 PLN00106 malate dehydrogenase 97.7 0.00014 3E-09 73.7 8.4 96 148-262 19-135 (323)
248 PLN02988 3-hydroxyisobutyryl-C 97.7 0.00021 4.5E-09 74.1 9.7 124 1-127 168-328 (381)
249 PRK13302 putative L-aspartate 97.7 0.00025 5.5E-09 70.2 10.0 70 147-238 6-79 (271)
250 cd01338 MDH_choloroplast_like 97.6 5.2E-05 1.1E-09 76.9 5.0 101 148-263 3-129 (322)
251 PRK08306 dipicolinate synthase 97.6 0.00026 5.7E-09 71.0 9.3 91 148-265 153-244 (296)
252 PRK08410 2-hydroxyacid dehydro 97.6 0.00027 5.9E-09 71.4 9.5 108 148-286 146-258 (311)
253 PRK00257 erythronate-4-phospha 97.6 8E-05 1.7E-09 77.0 5.7 97 148-274 117-221 (381)
254 PRK08644 thiamine biosynthesis 97.6 0.00018 3.8E-09 68.6 7.4 104 148-259 29-149 (212)
255 cd00704 MDH Malate dehydrogena 97.6 7.9E-05 1.7E-09 75.6 4.9 98 149-262 2-126 (323)
256 PRK15409 bifunctional glyoxyla 97.5 0.00096 2.1E-08 67.8 12.3 101 148-275 146-251 (323)
257 PF01488 Shikimate_DH: Shikima 97.5 0.00016 3.5E-09 63.8 5.8 74 148-239 13-88 (135)
258 TIGR01758 MDH_euk_cyt malate d 97.5 0.00021 4.6E-09 72.5 7.2 102 149-265 1-128 (324)
259 PTZ00325 malate dehydrogenase; 97.5 0.00026 5.7E-09 71.6 7.7 35 145-179 6-43 (321)
260 PRK11790 D-3-phosphoglycerate 97.5 0.00018 4E-09 75.4 6.8 99 148-275 152-254 (409)
261 TIGR01771 L-LDH-NAD L-lactate 97.5 0.00014 3E-09 73.1 5.6 97 152-262 1-113 (299)
262 KOG0016 Enoyl-CoA hydratase/is 97.5 0.00028 6E-09 67.2 7.1 93 1-129 171-263 (266)
263 PRK06487 glycerate dehydrogena 97.5 0.00055 1.2E-08 69.4 9.8 96 148-275 149-248 (317)
264 PRK13304 L-aspartate dehydroge 97.5 0.00048 1E-08 68.0 9.1 87 148-260 2-92 (265)
265 PLN02267 enoyl-CoA hydratase/i 97.5 0.00015 3.2E-09 70.6 5.2 42 1-42 160-202 (239)
266 cd00401 AdoHcyase S-adenosyl-L 97.4 0.00084 1.8E-08 70.0 10.5 86 148-262 203-289 (413)
267 PRK14188 bifunctional 5,10-met 97.4 0.00034 7.5E-09 69.6 7.2 71 148-263 159-231 (296)
268 PRK06141 ornithine cyclodeamin 97.4 0.00051 1.1E-08 69.6 8.7 93 147-263 125-220 (314)
269 PRK05225 ketol-acid reductoiso 97.4 0.00075 1.6E-08 70.1 9.8 185 148-359 37-251 (487)
270 COG4091 Predicted homoserine d 97.4 0.0021 4.6E-08 63.8 12.0 162 148-327 18-185 (438)
271 KOG1495 Lactate dehydrogenase 97.4 0.00073 1.6E-08 64.8 8.5 109 146-267 19-142 (332)
272 cd01075 NAD_bind_Leu_Phe_Val_D 97.4 0.0011 2.5E-08 62.5 9.9 39 148-186 29-67 (200)
273 PRK15438 erythronate-4-phospha 97.4 0.00022 4.8E-09 73.5 5.4 97 148-274 117-221 (378)
274 COG1748 LYS9 Saccharopine dehy 97.4 0.00029 6.2E-09 72.5 6.0 77 147-240 1-82 (389)
275 TIGR00936 ahcY adenosylhomocys 97.4 0.00096 2.1E-08 69.4 9.9 97 148-273 196-296 (406)
276 COG0569 TrkA K+ transport syst 97.3 0.0017 3.7E-08 62.5 10.9 96 148-263 1-102 (225)
277 cd05213 NAD_bind_Glutamyl_tRNA 97.3 0.0009 1.9E-08 67.8 9.3 94 147-262 178-273 (311)
278 PRK06932 glycerate dehydrogena 97.3 0.0014 2.9E-08 66.5 10.2 97 148-275 148-248 (314)
279 TIGR01470 cysG_Nterm siroheme 97.3 0.0019 4.1E-08 61.2 10.3 131 148-318 10-143 (205)
280 TIGR00507 aroE shikimate 5-deh 97.3 0.00045 9.8E-09 68.5 6.4 40 148-187 118-157 (270)
281 COG1052 LdhA Lactate dehydroge 97.3 0.00066 1.4E-08 68.7 7.6 102 148-275 147-251 (324)
282 PRK05476 S-adenosyl-L-homocyst 97.3 0.001 2.2E-08 69.7 9.1 87 148-263 213-300 (425)
283 PRK06718 precorrin-2 dehydroge 97.2 0.0031 6.6E-08 59.7 10.9 129 148-317 11-142 (202)
284 cd05197 GH4_glycoside_hydrolas 97.2 0.0037 8E-08 65.8 12.5 75 148-234 1-82 (425)
285 PF02056 Glyco_hydro_4: Family 97.2 0.0024 5.3E-08 58.9 9.7 74 149-234 1-81 (183)
286 PRK12549 shikimate 5-dehydroge 97.2 0.001 2.2E-08 66.3 7.4 74 148-237 128-203 (284)
287 cd05296 GH4_P_beta_glucosidase 97.2 0.0019 4.2E-08 67.8 9.7 75 148-234 1-83 (419)
288 cd05298 GH4_GlvA_pagL_like Gly 97.2 0.0032 7E-08 66.4 11.3 75 148-234 1-82 (437)
289 PLN02851 3-hydroxyisobutyryl-C 97.1 0.0019 4E-08 67.4 9.3 124 1-127 201-361 (407)
290 TIGR00745 apbA_panE 2-dehydrop 97.1 0.0038 8.3E-08 62.3 11.5 158 157-330 1-170 (293)
291 cd01336 MDH_cytoplasmic_cytoso 97.1 0.00093 2E-08 67.9 6.9 101 148-263 3-129 (325)
292 TIGR02371 ala_DH_arch alanine 97.1 0.0017 3.8E-08 66.1 8.8 94 147-264 128-224 (325)
293 PLN02306 hydroxypyruvate reduc 97.1 0.0014 3E-08 68.1 8.0 116 148-275 166-287 (386)
294 PRK06130 3-hydroxybutyryl-CoA 97.1 0.00029 6.3E-09 71.3 2.9 51 464-516 186-239 (311)
295 cd01080 NAD_bind_m-THF_DH_Cycl 97.1 0.002 4.3E-08 59.0 8.0 77 148-268 45-122 (168)
296 PRK08269 3-hydroxybutyryl-CoA 97.1 0.0003 6.4E-09 71.2 2.8 52 463-516 184-238 (314)
297 PRK14179 bifunctional 5,10-met 97.1 0.0011 2.4E-08 65.4 6.3 70 148-262 159-230 (284)
298 PTZ00075 Adenosylhomocysteinas 97.0 0.0019 4.1E-08 68.1 8.3 88 148-266 255-344 (476)
299 PF01113 DapB_N: Dihydrodipico 97.0 0.0022 4.9E-08 55.6 7.4 102 148-270 1-106 (124)
300 PRK07340 ornithine cyclodeamin 97.0 0.0022 4.7E-08 64.7 8.3 91 148-264 126-219 (304)
301 PRK04148 hypothetical protein; 97.0 0.0037 8.1E-08 54.6 8.5 94 148-262 18-111 (134)
302 TIGR03222 benzo_boxC benzoyl-C 97.0 0.00051 1.1E-08 74.2 3.7 43 1-43 188-230 (546)
303 PRK05086 malate dehydrogenase; 97.0 0.0025 5.5E-08 64.4 8.5 95 148-260 1-116 (312)
304 cd01078 NAD_bind_H4MPT_DH NADP 97.0 0.0012 2.5E-08 62.0 5.7 40 148-187 29-69 (194)
305 PRK00258 aroE shikimate 5-dehy 97.0 0.0015 3.3E-08 65.0 6.5 72 148-238 124-197 (278)
306 PLN02494 adenosylhomocysteinas 97.0 0.0055 1.2E-07 64.5 10.6 97 148-273 255-355 (477)
307 smart00859 Semialdhyde_dh Semi 96.9 0.004 8.7E-08 53.7 8.1 100 149-268 1-105 (122)
308 PRK08184 benzoyl-CoA-dihydrodi 96.9 0.00059 1.3E-08 73.9 3.5 43 1-43 192-234 (550)
309 COG0059 IlvC Ketol-acid reduct 96.9 0.015 3.3E-07 57.1 12.5 180 147-356 18-224 (338)
310 PRK13301 putative L-aspartate 96.9 0.0048 1E-07 60.1 9.2 64 148-236 3-72 (267)
311 PRK08618 ornithine cyclodeamin 96.9 0.0036 7.8E-08 63.8 8.7 93 148-264 128-223 (325)
312 COG1712 Predicted dinucleotide 96.9 0.0061 1.3E-07 57.3 9.1 92 148-266 1-96 (255)
313 TIGR01035 hemA glutamyl-tRNA r 96.9 0.0031 6.8E-08 66.5 8.4 38 148-185 181-219 (417)
314 PRK00045 hemA glutamyl-tRNA re 96.8 0.0037 8.1E-08 66.1 8.6 38 148-185 183-221 (423)
315 PRK09310 aroDE bifunctional 3- 96.8 0.0031 6.8E-08 67.6 7.5 70 148-238 333-402 (477)
316 TIGR00518 alaDH alanine dehydr 96.8 0.0044 9.5E-08 64.2 8.2 40 147-186 167-206 (370)
317 COG1064 AdhP Zn-dependent alco 96.8 0.064 1.4E-06 54.4 16.1 40 148-187 168-207 (339)
318 TIGR02992 ectoine_eutC ectoine 96.7 0.0053 1.2E-07 62.6 8.5 92 148-262 130-224 (326)
319 PF01118 Semialdhyde_dh: Semia 96.7 0.0024 5.2E-08 55.1 5.1 100 149-269 1-104 (121)
320 KOG0069 Glyoxylate/hydroxypyru 96.7 0.0056 1.2E-07 61.6 8.3 104 147-274 162-267 (336)
321 COG2910 Putative NADH-flavin r 96.7 0.0033 7.1E-08 57.3 5.8 38 148-185 1-39 (211)
322 PLN00203 glutamyl-tRNA reducta 96.7 0.0025 5.5E-08 68.6 5.9 40 147-186 266-306 (519)
323 TIGR01809 Shik-DH-AROM shikima 96.6 0.0051 1.1E-07 61.3 7.4 40 148-187 126-166 (282)
324 TIGR03200 dearomat_oah 6-oxocy 96.5 0.0059 1.3E-07 62.1 7.1 42 1-42 188-241 (360)
325 PRK05562 precorrin-2 dehydroge 96.5 0.019 4.1E-07 54.8 10.2 129 148-317 26-158 (223)
326 PRK08291 ectoine utilization p 96.5 0.0088 1.9E-07 61.1 8.5 73 148-237 133-208 (330)
327 PRK11861 bifunctional prephena 96.5 0.011 2.4E-07 66.3 10.0 102 230-333 1-118 (673)
328 PRK12475 thiamine/molybdopteri 96.5 0.0063 1.4E-07 62.2 7.2 33 148-180 25-58 (338)
329 PRK06046 alanine dehydrogenase 96.5 0.011 2.3E-07 60.4 8.5 94 147-264 129-225 (326)
330 PF03059 NAS: Nicotianamine sy 96.4 0.0088 1.9E-07 58.9 7.5 99 148-261 122-229 (276)
331 PRK13303 L-aspartate dehydroge 96.4 0.0043 9.4E-08 61.3 5.4 69 147-237 1-72 (265)
332 TIGR02356 adenyl_thiF thiazole 96.4 0.0053 1.2E-07 58.0 5.7 32 148-179 22-54 (202)
333 PRK00048 dihydrodipicolinate r 96.4 0.0073 1.6E-07 59.4 6.8 66 148-237 2-71 (257)
334 COG0169 AroE Shikimate 5-dehyd 96.4 0.0085 1.9E-07 59.4 7.0 75 148-238 127-202 (283)
335 KOG2666 UDP-glucose/GDP-mannos 96.3 0.061 1.3E-06 53.0 12.3 202 147-361 1-251 (481)
336 cd05191 NAD_bind_amino_acid_DH 96.3 0.017 3.8E-07 46.5 7.3 31 148-178 24-55 (86)
337 PLN02819 lysine-ketoglutarate 96.3 0.042 9.1E-07 63.7 12.8 77 144-239 566-661 (1042)
338 PRK06719 precorrin-2 dehydroge 96.2 0.047 1E-06 49.4 10.3 127 148-317 14-142 (157)
339 PRK13940 glutamyl-tRNA reducta 96.2 0.0088 1.9E-07 62.8 6.3 39 148-186 182-221 (414)
340 COG2423 Predicted ornithine cy 96.2 0.015 3.3E-07 58.9 7.5 94 147-263 130-226 (330)
341 PRK00961 H(2)-dependent methyl 96.1 0.03 6.6E-07 54.0 9.0 108 217-326 132-242 (342)
342 PRK14175 bifunctional 5,10-met 96.1 0.018 3.9E-07 57.1 7.8 73 148-264 159-232 (286)
343 PF13460 NAD_binding_10: NADH( 96.1 0.017 3.6E-07 53.2 7.3 36 150-185 1-37 (183)
344 COG0373 HemA Glutamyl-tRNA red 96.1 0.012 2.6E-07 61.0 6.8 40 148-187 179-219 (414)
345 PRK00683 murD UDP-N-acetylmura 96.1 0.038 8.3E-07 58.3 10.9 37 147-183 3-39 (418)
346 TIGR01921 DAP-DH diaminopimela 96.1 0.066 1.4E-06 54.1 11.9 33 148-180 4-38 (324)
347 PRK06823 ornithine cyclodeamin 96.1 0.027 5.9E-07 57.0 9.3 94 147-264 128-224 (315)
348 PF01408 GFO_IDH_MocA: Oxidore 96.1 0.058 1.3E-06 45.9 10.1 68 148-238 1-74 (120)
349 COG1648 CysG Siroheme synthase 96.1 0.085 1.8E-06 50.1 11.7 130 148-317 13-145 (210)
350 COG0686 Ald Alanine dehydrogen 96.1 0.0088 1.9E-07 58.9 5.0 96 148-261 169-267 (371)
351 PRK06407 ornithine cyclodeamin 96.1 0.015 3.3E-07 58.5 7.0 94 148-264 118-214 (301)
352 PRK07688 thiamine/molybdopteri 96.0 0.016 3.5E-07 59.2 7.2 33 148-180 25-58 (339)
353 PRK06153 hypothetical protein; 96.0 0.015 3.2E-07 59.7 6.5 32 148-179 177-209 (393)
354 PF03435 Saccharop_dh: Sacchar 96.0 0.0086 1.9E-07 62.5 5.0 38 150-187 1-40 (386)
355 PRK09424 pntA NAD(P) transhydr 96.0 0.036 7.8E-07 59.5 9.8 40 148-187 166-205 (509)
356 PF02254 TrkA_N: TrkA-N domain 96.0 0.081 1.7E-06 44.8 10.2 89 150-260 1-95 (116)
357 PRK09496 trkA potassium transp 95.9 0.048 1E-06 58.1 10.7 39 148-186 1-39 (453)
358 TIGR01723 hmd_TIGR 5,10-methen 95.9 0.051 1.1E-06 52.7 9.4 105 218-326 131-240 (340)
359 TIGR00036 dapB dihydrodipicoli 95.9 0.022 4.8E-07 56.3 7.3 32 148-179 2-36 (266)
360 PF02423 OCD_Mu_crystall: Orni 95.9 0.016 3.5E-07 58.6 6.3 93 148-264 129-226 (313)
361 PRK14192 bifunctional 5,10-met 95.8 0.028 6E-07 56.0 7.7 71 148-262 160-231 (283)
362 cd05311 NAD_bind_2_malic_enz N 95.8 0.019 4E-07 55.4 6.2 32 148-179 26-60 (226)
363 PRK14027 quinate/shikimate deh 95.8 0.014 3.1E-07 58.1 5.5 41 148-188 128-169 (283)
364 PRK10669 putative cation:proto 95.8 0.024 5.1E-07 62.3 7.8 95 148-260 418-514 (558)
365 PF00070 Pyr_redox: Pyridine n 95.8 0.016 3.5E-07 45.8 4.8 35 149-183 1-35 (80)
366 PRK06199 ornithine cyclodeamin 95.8 0.024 5.2E-07 58.8 7.3 75 147-236 155-233 (379)
367 PRK06129 3-hydroxyacyl-CoA deh 95.7 0.0066 1.4E-07 61.4 2.9 49 463-513 188-239 (308)
368 PRK03659 glutathione-regulated 95.7 0.029 6.3E-07 62.1 7.8 98 148-263 401-500 (601)
369 TIGR00561 pntA NAD(P) transhyd 95.6 0.053 1.1E-06 58.1 9.3 40 148-187 165-204 (511)
370 PRK06270 homoserine dehydrogen 95.6 0.09 2E-06 53.9 10.7 22 148-169 3-24 (341)
371 PRK12409 D-amino acid dehydrog 95.6 0.012 2.6E-07 61.8 4.4 34 147-180 1-34 (410)
372 PRK07589 ornithine cyclodeamin 95.6 0.064 1.4E-06 54.9 9.5 96 147-264 129-227 (346)
373 PRK00141 murD UDP-N-acetylmura 95.6 0.11 2.3E-06 55.9 11.7 37 146-182 14-50 (473)
374 cd01484 E1-2_like Ubiquitin ac 95.5 0.054 1.2E-06 52.3 7.9 160 149-316 1-177 (234)
375 PRK12548 shikimate 5-dehydroge 95.4 0.03 6.4E-07 56.1 6.2 34 148-181 127-161 (289)
376 PRK14106 murD UDP-N-acetylmura 95.4 0.19 4.1E-06 53.5 12.7 33 148-180 6-38 (450)
377 PRK09496 trkA potassium transp 95.3 0.15 3.3E-06 54.2 11.7 41 147-187 231-271 (453)
378 PRK12749 quinate/shikimate deh 95.3 0.048 1E-06 54.5 7.2 34 148-181 125-159 (288)
379 PRK12550 shikimate 5-dehydroge 95.3 0.058 1.3E-06 53.4 7.7 39 148-186 123-162 (272)
380 PRK02318 mannitol-1-phosphate 95.3 0.037 8E-07 57.7 6.6 39 148-186 1-40 (381)
381 PRK00436 argC N-acetyl-gamma-g 95.2 0.053 1.1E-06 55.7 7.5 100 147-268 2-105 (343)
382 PRK03562 glutathione-regulated 95.2 0.063 1.4E-06 59.6 8.5 95 147-259 400-496 (621)
383 PF13241 NAD_binding_7: Putati 95.2 0.05 1.1E-06 45.4 6.0 73 148-248 8-81 (103)
384 PRK07877 hypothetical protein; 95.1 0.02 4.3E-07 64.0 4.3 32 148-180 108-141 (722)
385 PRK04207 glyceraldehyde-3-phos 95.1 0.08 1.7E-06 54.3 8.4 107 147-264 1-111 (341)
386 PRK10637 cysG siroheme synthas 95.1 0.13 2.9E-06 54.9 10.3 130 148-318 13-146 (457)
387 PRK06349 homoserine dehydrogen 95.1 0.11 2.4E-06 55.0 9.5 35 148-182 4-49 (426)
388 PRK03369 murD UDP-N-acetylmura 95.0 0.19 4.1E-06 54.2 11.4 35 148-182 13-47 (488)
389 PRK05600 thiamine biosynthesis 95.0 0.067 1.4E-06 55.4 7.4 32 148-179 42-74 (370)
390 PRK05597 molybdopterin biosynt 95.0 0.021 4.6E-07 58.9 3.7 33 148-180 29-62 (355)
391 COG1486 CelF Alpha-galactosida 94.9 0.084 1.8E-06 55.0 7.9 75 148-234 4-85 (442)
392 TIGR02355 moeB molybdopterin s 94.9 0.054 1.2E-06 52.6 6.2 34 148-181 25-59 (240)
393 cd00755 YgdL_like Family of ac 94.9 0.078 1.7E-06 51.1 7.1 33 148-180 12-45 (231)
394 TIGR03736 PRTRC_ThiF PRTRC sys 94.8 0.057 1.2E-06 52.4 6.0 98 148-250 12-129 (244)
395 cd01486 Apg7 Apg7 is an E1-lik 94.8 0.014 3.1E-07 57.9 1.8 31 149-179 1-32 (307)
396 PRK14189 bifunctional 5,10-met 94.8 0.07 1.5E-06 52.9 6.6 70 148-262 159-230 (285)
397 PRK15116 sulfur acceptor prote 94.8 0.046 1E-06 53.8 5.3 33 148-180 31-64 (268)
398 PRK08300 acetaldehyde dehydrog 94.8 0.16 3.4E-06 50.8 9.0 92 148-265 5-104 (302)
399 KOG0022 Alcohol dehydrogenase, 94.7 0.8 1.7E-05 45.6 13.5 40 148-187 194-234 (375)
400 cd00757 ThiF_MoeB_HesA_family 94.7 0.053 1.2E-06 52.3 5.6 33 148-180 22-55 (228)
401 PRK05690 molybdopterin biosynt 94.7 0.066 1.4E-06 52.2 6.3 33 148-180 33-66 (245)
402 PRK00711 D-amino acid dehydrog 94.7 0.029 6.3E-07 59.0 4.1 34 148-181 1-34 (416)
403 cd01076 NAD_bind_1_Glu_DH NAD( 94.7 0.096 2.1E-06 50.4 7.1 31 148-178 32-63 (227)
404 PRK08762 molybdopterin biosynt 94.6 0.068 1.5E-06 55.6 6.4 32 148-179 136-168 (376)
405 CHL00194 ycf39 Ycf39; Provisio 94.5 0.081 1.7E-06 53.6 6.6 36 148-183 1-37 (317)
406 PRK02472 murD UDP-N-acetylmura 94.5 0.25 5.3E-06 52.6 10.6 34 148-181 6-39 (447)
407 PLN03075 nicotianamine synthas 94.5 0.17 3.7E-06 50.4 8.6 101 147-262 124-233 (296)
408 KOG2018 Predicted dinucleotide 94.5 0.16 3.5E-06 50.0 8.1 110 123-247 61-185 (430)
409 PRK12828 short chain dehydroge 94.4 0.074 1.6E-06 50.8 5.8 38 148-185 8-46 (239)
410 COG1063 Tdh Threonine dehydrog 94.4 0.14 3.1E-06 52.7 8.2 40 149-188 171-211 (350)
411 PRK14191 bifunctional 5,10-met 94.3 0.12 2.5E-06 51.3 7.0 71 148-262 158-229 (285)
412 PRK08223 hypothetical protein; 94.3 0.044 9.5E-07 54.3 3.9 33 148-180 28-61 (287)
413 cd01490 Ube1_repeat2 Ubiquitin 94.3 0.14 3.1E-06 53.7 7.9 163 149-318 1-186 (435)
414 cd05211 NAD_bind_Glu_Leu_Phe_V 94.2 0.099 2.1E-06 50.0 6.1 33 148-180 24-57 (217)
415 TIGR01381 E1_like_apg7 E1-like 94.2 0.037 8E-07 60.3 3.3 32 148-179 339-371 (664)
416 cd01489 Uba2_SUMO Ubiquitin ac 94.1 0.24 5.3E-06 49.9 8.9 32 149-180 1-33 (312)
417 COG0499 SAM1 S-adenosylhomocys 94.1 0.15 3.2E-06 51.4 7.2 89 148-265 210-298 (420)
418 TIGR01850 argC N-acetyl-gamma- 94.1 0.13 2.9E-06 52.8 7.2 100 148-268 1-105 (346)
419 KOG1200 Mitochondrial/plastidi 94.1 0.41 8.9E-06 44.3 9.4 40 147-186 13-54 (256)
420 COG0771 MurD UDP-N-acetylmuram 94.1 0.3 6.6E-06 51.5 9.9 36 147-182 7-42 (448)
421 PF02882 THF_DHG_CYH_C: Tetrah 94.1 0.1 2.3E-06 47.2 5.7 74 148-265 37-111 (160)
422 COG0136 Asd Aspartate-semialde 94.1 0.11 2.4E-06 52.3 6.2 98 148-268 2-103 (334)
423 PLN02968 Probable N-acetyl-gam 94.1 0.13 2.9E-06 53.4 7.1 102 146-268 37-140 (381)
424 KOG0023 Alcohol dehydrogenase, 94.1 2.8 6E-05 42.0 15.7 39 148-187 183-222 (360)
425 PRK05868 hypothetical protein; 94.1 0.046 9.9E-07 56.8 3.7 36 147-182 1-36 (372)
426 PF01266 DAO: FAD dependent ox 94.1 0.059 1.3E-06 54.8 4.5 31 149-179 1-31 (358)
427 cd05212 NAD_bind_m-THF_DH_Cycl 94.0 0.17 3.7E-06 44.8 6.8 72 148-263 29-101 (140)
428 PLN00016 RNA-binding protein; 94.0 0.11 2.4E-06 54.0 6.6 37 146-182 51-92 (378)
429 PF00899 ThiF: ThiF family; I 94.0 0.06 1.3E-06 47.2 3.9 33 148-180 3-36 (135)
430 cd01483 E1_enzyme_family Super 94.0 0.057 1.2E-06 47.9 3.8 32 149-180 1-33 (143)
431 PF13380 CoA_binding_2: CoA bi 94.0 0.1 2.2E-06 44.6 5.2 79 148-258 1-84 (116)
432 PF13450 NAD_binding_8: NAD(P) 94.0 0.067 1.5E-06 41.0 3.6 30 152-181 1-30 (68)
433 cd01079 NAD_bind_m-THF_DH NAD 93.9 0.3 6.5E-06 45.5 8.4 89 148-266 63-160 (197)
434 PRK14178 bifunctional 5,10-met 93.9 0.18 3.9E-06 49.8 7.3 73 148-264 153-226 (279)
435 PRK12829 short chain dehydroge 93.9 0.26 5.7E-06 47.9 8.7 38 148-185 12-50 (264)
436 PRK01710 murD UDP-N-acetylmura 93.9 0.48 1E-05 50.7 11.2 34 148-181 15-48 (458)
437 PRK07531 bifunctional 3-hydrox 93.9 0.037 8E-07 59.8 2.7 52 461-514 184-238 (495)
438 COG0300 DltE Short-chain dehyd 93.8 0.17 3.7E-06 49.6 7.0 46 146-191 5-51 (265)
439 TIGR03215 ac_ald_DH_ac acetald 93.8 0.27 6E-06 48.9 8.5 91 148-264 2-97 (285)
440 cd01492 Aos1_SUMO Ubiquitin ac 93.7 0.18 3.8E-06 47.5 6.6 33 148-180 22-55 (197)
441 PRK01438 murD UDP-N-acetylmura 93.7 0.2 4.4E-06 53.9 7.9 35 147-181 16-50 (480)
442 PRK08163 salicylate hydroxylas 93.7 0.062 1.3E-06 56.1 3.9 34 148-181 5-38 (396)
443 PF01494 FAD_binding_3: FAD bi 93.6 0.058 1.3E-06 54.8 3.6 33 149-181 3-35 (356)
444 PRK06753 hypothetical protein; 93.6 0.064 1.4E-06 55.5 3.9 34 148-181 1-34 (373)
445 COG2344 AT-rich DNA-binding pr 93.6 0.14 3.1E-06 46.8 5.5 40 145-184 82-124 (211)
446 COG0673 MviM Predicted dehydro 93.6 0.18 3.8E-06 51.4 7.1 73 146-240 2-81 (342)
447 PRK11259 solA N-methyltryptoph 93.5 0.072 1.6E-06 55.1 4.0 32 149-180 5-36 (376)
448 PRK14852 hypothetical protein; 93.4 0.08 1.7E-06 60.5 4.4 33 148-180 333-366 (989)
449 PRK07832 short chain dehydroge 93.4 0.21 4.6E-06 49.1 7.0 39 148-186 1-40 (272)
450 COG1179 Dinucleotide-utilizing 93.4 0.46 1E-05 45.5 8.7 98 148-249 31-143 (263)
451 PRK08374 homoserine dehydrogen 93.4 0.34 7.5E-06 49.5 8.6 21 148-168 3-23 (336)
452 PRK14982 acyl-ACP reductase; P 93.4 0.15 3.2E-06 52.1 5.8 38 148-185 156-196 (340)
453 TIGR01377 soxA_mon sarcosine o 93.3 0.08 1.7E-06 54.8 4.1 32 149-180 2-33 (380)
454 PRK05866 short chain dehydroge 93.3 0.18 3.8E-06 50.5 6.4 40 148-187 41-81 (293)
455 PRK06847 hypothetical protein; 93.3 0.084 1.8E-06 54.6 4.1 35 147-181 4-38 (375)
456 PRK07236 hypothetical protein; 93.3 0.086 1.9E-06 54.9 4.2 36 146-181 5-40 (386)
457 PRK01747 mnmC bifunctional tRN 93.2 0.075 1.6E-06 59.7 3.9 33 148-180 261-293 (662)
458 PRK07062 short chain dehydroge 93.2 0.18 3.9E-06 49.3 6.2 40 148-187 9-49 (265)
459 PRK10792 bifunctional 5,10-met 93.2 0.23 5.1E-06 49.2 6.8 71 148-262 160-231 (285)
460 PRK06057 short chain dehydroge 93.2 0.16 3.5E-06 49.4 5.7 38 148-185 8-46 (255)
461 PRK06196 oxidoreductase; Provi 93.1 0.22 4.8E-06 50.3 6.8 41 148-188 27-68 (315)
462 COG0665 DadA Glycine/D-amino a 93.1 0.097 2.1E-06 54.3 4.3 35 147-181 4-38 (387)
463 PRK07588 hypothetical protein; 93.0 0.089 1.9E-06 54.9 3.8 34 148-181 1-34 (391)
464 PRK06194 hypothetical protein; 93.0 0.2 4.3E-06 49.7 6.1 40 148-187 7-47 (287)
465 PRK14176 bifunctional 5,10-met 92.9 0.27 5.8E-06 48.8 6.7 73 148-264 165-238 (287)
466 PRK08340 glucose-1-dehydrogena 92.9 0.23 4.9E-06 48.5 6.2 40 148-187 1-41 (259)
467 cd01491 Ube1_repeat1 Ubiquitin 92.9 1 2.2E-05 44.8 10.8 33 148-180 20-53 (286)
468 PRK14874 aspartate-semialdehyd 92.8 0.17 3.6E-06 51.8 5.4 143 148-325 2-152 (334)
469 PRK11728 hydroxyglutarate oxid 92.8 0.1 2.2E-06 54.6 3.9 33 148-180 3-37 (393)
470 PRK07538 hypothetical protein; 92.7 0.1 2.2E-06 55.0 3.8 34 148-181 1-34 (413)
471 TIGR03364 HpnW_proposed FAD de 92.7 0.12 2.5E-06 53.4 4.2 32 149-180 2-33 (365)
472 cd05295 MDH_like Malate dehydr 92.6 0.57 1.2E-05 49.6 9.0 101 148-262 124-250 (452)
473 TIGR00137 gid_trmFO tRNA:m(5)U 92.6 0.11 2.4E-06 54.7 3.7 33 149-181 2-34 (433)
474 PRK06940 short chain dehydroge 92.6 0.23 5E-06 49.1 5.9 38 148-186 2-40 (275)
475 PRK06475 salicylate hydroxylas 92.6 0.1 2.2E-06 54.7 3.5 34 148-181 3-36 (400)
476 PRK07825 short chain dehydroge 92.5 0.27 5.8E-06 48.3 6.3 39 148-186 6-45 (273)
477 PRK05335 tRNA (uracil-5-)-meth 92.5 0.12 2.7E-06 54.1 4.0 35 147-181 2-36 (436)
478 PRK07102 short chain dehydroge 92.5 0.29 6.4E-06 47.1 6.4 40 147-186 1-41 (243)
479 COG0190 FolD 5,10-methylene-te 92.4 0.2 4.3E-06 49.2 5.0 72 148-263 157-229 (283)
480 PRK08277 D-mannonate oxidoredu 92.4 0.27 5.8E-06 48.5 6.1 39 148-186 11-50 (278)
481 PRK02705 murD UDP-N-acetylmura 92.4 1.3 2.8E-05 47.3 11.8 33 149-181 2-34 (459)
482 PLN03209 translocon at the inn 92.3 0.28 6.1E-06 53.3 6.5 41 148-188 81-122 (576)
483 PRK06079 enoyl-(acyl carrier p 92.3 0.21 4.6E-06 48.6 5.2 33 148-180 8-43 (252)
484 KOG0068 D-3-phosphoglycerate d 92.3 0.4 8.6E-06 48.0 6.9 100 148-274 147-250 (406)
485 PRK08773 2-octaprenyl-3-methyl 92.2 0.13 2.8E-06 53.7 3.7 33 148-180 7-39 (392)
486 PRK07074 short chain dehydroge 92.2 0.21 4.5E-06 48.6 5.0 38 148-185 3-41 (257)
487 TIGR02360 pbenz_hydroxyl 4-hyd 92.1 0.14 3.1E-06 53.4 4.0 34 148-181 3-36 (390)
488 PRK11101 glpA sn-glycerol-3-ph 92.1 0.15 3.2E-06 55.9 4.1 33 148-180 7-39 (546)
489 PRK07231 fabG 3-ketoacyl-(acyl 92.0 0.34 7.4E-06 46.7 6.3 39 148-186 6-45 (251)
490 TIGR01408 Ube1 ubiquitin-activ 92.0 0.38 8.2E-06 56.1 7.5 163 148-318 420-606 (1008)
491 COG0654 UbiH 2-polyprenyl-6-me 92.0 0.15 3.2E-06 53.2 4.0 32 148-179 3-34 (387)
492 TIGR03366 HpnZ_proposed putati 92.0 1.3 2.8E-05 43.9 10.5 39 148-186 122-161 (280)
493 PRK06617 2-octaprenyl-6-methox 92.0 0.15 3.2E-06 53.0 3.9 32 148-179 2-33 (374)
494 TIGR01988 Ubi-OHases Ubiquinon 92.0 0.13 2.7E-06 53.3 3.4 32 150-181 2-33 (385)
495 PRK04308 murD UDP-N-acetylmura 91.9 0.77 1.7E-05 48.9 9.3 34 148-181 6-39 (445)
496 PRK05732 2-octaprenyl-6-methox 91.9 0.15 3.3E-06 53.0 3.9 32 148-179 4-38 (395)
497 COG3349 Uncharacterized conser 91.9 0.16 3.4E-06 53.8 3.8 34 148-181 1-34 (485)
498 PRK08013 oxidoreductase; Provi 91.8 0.13 2.8E-06 54.0 3.2 34 148-181 4-37 (400)
499 PRK07831 short chain dehydroge 91.8 0.38 8.3E-06 46.9 6.4 41 148-188 18-60 (262)
500 PRK08267 short chain dehydroge 91.8 0.35 7.6E-06 47.1 6.1 40 147-186 1-41 (260)
No 1
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=3.1e-98 Score=825.83 Aligned_cols=502 Identities=28% Similarity=0.420 Sum_probs=449.7
Q ss_pred CcccCCCCCHHHHHhCCCcceecCC-------------chHHHHHHHHHHhhhhcCCCchhhhcccCCCC-----CchHH
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAP-------------NQLVSTARQWALDILEHRRPWVATLYKTDKIE-----PLGEA 62 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~-------------~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~-----~~~~~ 62 (518)
|+++|++++|++|+++||||+|||+ +++.+.|.+|+++++..+.+..+.....++.. .....
T Consensus 174 l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (737)
T TIGR02441 174 MMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVMTNPFVR 253 (737)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCccchhhcccchhH
Confidence 5789999999999999999999987 55889999999887653212111111011110 00123
Q ss_pred HHHHHHHHHHHHhhCCC-CCcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCCCCCCCCCCC
Q 010109 63 REIFKFARAQARKQAPN-LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLG 141 (518)
Q Consensus 63 ~~~~~~a~~~~~~~~~~-~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~k~~~~~~~~ 141 (518)
...+..+++++.++.++ ||||++++++|+.+...+++++|+.|+++|.+|+.|+++|+++|+||.++..+|.+..
T Consensus 254 ~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~~~~~~~~~---- 329 (737)
T TIGR02441 254 QQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKNKFG---- 329 (737)
T ss_pred HHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCCC----
Confidence 45678888888888765 9999999999999999999999999999999999999999999999999999886531
Q ss_pred CCcccceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 010109 142 LAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (518)
Q Consensus 142 ~~~~~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (518)
..+++|++|+|||+|+||++||..++.+|++|+++|++++.++++.+++.+.+++.+++|++++.+.+..+++|++++++
T Consensus 330 ~~~~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 409 (737)
T TIGR02441 330 KPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY 409 (737)
T ss_pred CCCCcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH
Confidence 13478999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEEeCC
Q 010109 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTN 301 (518)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~g~ 301 (518)
+++++||+|||||||++++|+++|++|++++++++||+||||++++++|++.+.+|+||+|+|||||++.|+|||||+++
T Consensus 410 ~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~ 489 (737)
T TIGR02441 410 SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHD 489 (737)
T ss_pred HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCcEEEeCCcccchhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHhhhcCchh
Q 010109 302 QTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGV 381 (518)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nril~~~~~Ea~~l~~~G~~~~~ID~a~~~~G~p~GPf~~~D~~Gld~ 381 (518)
.|++++++.+.++++.+||+||+++|+||||+||++.+|++||++|+++|+++++||.++++||||||||+++|++|||+
T Consensus 490 ~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv~~~~ID~a~~~~G~p~GP~~l~D~vGld~ 569 (737)
T TIGR02441 490 GTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLADEVGVDV 569 (737)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred HHHhhhhhhhhCCCCCc--cccHHHHHHHCCCCCccCCccceeccCCC--CCCCChHHHHHHHHHHhccCccCCcccccc
Q 010109 382 AIATGMQFIENFPERTY--KSMIIPIMQEDKRAGETTRKGFYLYDERR--KASPDPEVKKFIEKARSMSGVAIDPKSRQL 457 (518)
Q Consensus 382 ~~~~~~~~~~~~~~~~~--~~~~l~~lv~~G~~G~k~g~GfY~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (518)
++++++.+++.+++++. |++++++|+++|++|+|||+|||+|++++ ++..++++..++...+. .|. ....
T Consensus 570 ~~~v~~~l~~~~~~~~~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~~~~~~~~~~~v~~~~~~~~k----~p~--~~~~ 643 (737)
T TIGR02441 570 AEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGRKSGKGIFIYQEGKKGSKKVNSDADEILAQYKL----PPK--AEVS 643 (737)
T ss_pred HHHHHHHHHHhcCcccccccCHHHHHHHHCCCCcccCCCeeEEcCCCCCCcCCCCHHHHHHHHHhcc----Ccc--cccC
Confidence 99999999998887653 57899999999999999999999998654 57789999888765432 121 0123
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhccc-cCccccccccccccccCchh---hHHHHHHHHHhh
Q 010109 458 TLTLRLLWAWVFHLTGEESCSGLTLLD-RSTFTHDWRNGQACTGNFLS---HVLSWLKELARE 516 (518)
Q Consensus 458 ~~~~~~i~~r~~~~~~nea~~~l~~~~-~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~ 516 (518)
+.++|++|++++|+|||++||+||+ ++++||| .++.+|.|||. |||.++|.+|-+
T Consensus 644 --~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID--~a~~~G~GfP~~~gGP~~~aD~~Gld 702 (737)
T TIGR02441 644 --SPEDIQIRLVSRFVNEAVLCLEEGILASPSEGD--IGAVFGLGFPPFLGGPFRFVDLYGAD 702 (737)
T ss_pred --ChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHH--HHHHhCCCCCCccCCHHHHHHHhCHH
Confidence 7899999999999999999999999 8999999 99999999997 999999999854
No 2
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=7.4e-97 Score=813.41 Aligned_cols=502 Identities=29% Similarity=0.467 Sum_probs=445.6
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCC--CCchHHHHHHHHHHHHHH-hhC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKI--EPLGEAREIFKFARAQAR-KQA 77 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~-~~~ 77 (518)
|+++|++++|++|+++||||+|+|++++.+.|.++++++.....++.+........ .+.......+..+++++. ++.
T Consensus 166 llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (714)
T TIGR02437 166 WIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAKRQPKLEPLKLSKIEAMMSFTTAKGMVAQVAG 245 (714)
T ss_pred HHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCcccccCCCCcccccccchHHHHHHHHHHHHHHHhhc
Confidence 57899999999999999999999999999999999988665422222111100000 011111223555666444 456
Q ss_pred CCCCcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCCCCCCCCCCCCCcccceEEEEEeCCc
Q 010109 78 PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL 157 (518)
Q Consensus 78 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~k~~~~~~~~~~~~~~~kV~VIGaG~ 157 (518)
++||||..++++++.+...+++++++.|++.|.+|+.|+++++++++||.+|+.++.+.. .+..+++|+||+|||+|+
T Consensus 246 ~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~~~~~~~~--~~~~~~~i~~v~ViGaG~ 323 (714)
T TIGR02437 246 PHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKAKK--ADKIAKDVKQAAVLGAGI 323 (714)
T ss_pred CCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHhhcCCCCC--CCCCccccceEEEECCch
Confidence 789999999999999999999999999999999999999999999999999999886422 123567899999999999
Q ss_pred chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEecccC
Q 010109 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237 (518)
Q Consensus 158 MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~ 237 (518)
||++||..++.+|++|+++|++++.++++.+++.+.+++.+++|++++++.+..+++|+++++++++++||+|||||||+
T Consensus 324 mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E~ 403 (714)
T TIGR02437 324 MGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDIVVEAVVEN 403 (714)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEEcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEEeCCCCcHHHHHHHHHHHHh
Q 010109 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 317 (518)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~g~~t~~e~~~~~~~l~~~ 317 (518)
+++|+++|++|++++++++||+||||++++++|++.+.+|+||+|+|||||++.|||||||++..|++++++.+.++++.
T Consensus 404 l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~ 483 (714)
T TIGR02437 404 PKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYASK 483 (714)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEeCCcccchhhhhHHHHHHHHHHHHHcCCCHHHHHHHHH-hcCCCccHHHHhhhcCchhHHHhhhhhhhhCCCC
Q 010109 318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (518)
Q Consensus 318 lGk~~v~v~d~~Gfi~nril~~~~~Ea~~l~~~G~~~~~ID~a~~-~~G~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~~ 396 (518)
+||+||+++|+|||++||++.+|++||++|+++|++|++||.+++ +||||||||+++|++|||+++++++.++..++++
T Consensus 484 lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG~~~~~ID~a~~~~~G~p~GPf~l~D~~Gld~~~~i~~~~~~~~~~~ 563 (714)
T TIGR02437 484 MGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAVMAEGFPDR 563 (714)
T ss_pred cCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCCCccCHHHHHHhhhHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999999999999998 8999999999999999999999999999888775
Q ss_pred C--ccccHHHHHHHCCCCCccCCccceeccCC----CCCCCChHHHHHHHHHHhccCccCCccccccCCCHHHHHHHHHH
Q 010109 397 T--YKSMIIPIMQEDKRAGETTRKGFYLYDER----RKASPDPEVKKFIEKARSMSGVAIDPKSRQLTLTLRLLWAWVFH 470 (518)
Q Consensus 397 ~--~~~~~l~~lv~~G~~G~k~g~GfY~y~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~ 470 (518)
+ .+++++++||++|++|+|||+|||+|+++ .+...|+++..++...+. . ++.+ +.+||++|+++
T Consensus 564 ~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~--~~~~i~~Rll~ 633 (714)
T TIGR02437 564 MGKDGRDAIDALFEAKRLGQKNGKGFYAYEADKKGKPKKLVDSSVLELLKPVVY----E----QRDF--DDEEIIARMMI 633 (714)
T ss_pred cccchhHHHHHHHHCCCCcccCCCEEEecccCcCccccCCCCHHHHHHHHHhhc----c----cCCC--CHHHHHHHHHH
Confidence 4 24589999999999999999999999643 245688998887754432 1 1245 88999999999
Q ss_pred HHHHHHHHHhhcc-ccCccccccccccccccCchh---hHHHHHHHHHhh
Q 010109 471 LTGEESCSGLTLL-DRSTFTHDWRNGQACTGNFLS---HVLSWLKELARE 516 (518)
Q Consensus 471 ~~~nea~~~l~~~-~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~ 516 (518)
+|+|||++||+|| +++++||| .++.+|.|||. |||.++|.+|-+
T Consensus 634 ~~~nEa~~ll~eGiva~~~dID--~~~~~G~Gfp~~~gGP~~~~D~~Gl~ 681 (714)
T TIGR02437 634 PMINETVRCLEEGIVATAAEAD--MGLVYGLGFPPFRGGAFRYLDSIGVA 681 (714)
T ss_pred HHHHHHHHHHhCCCcCCHHHHH--HHHHhCCCCCCccCCHHHHHHHhCHH
Confidence 9999999999998 89999999 99999999997 999999999854
No 3
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=5.7e-94 Score=792.58 Aligned_cols=502 Identities=31% Similarity=0.488 Sum_probs=446.2
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhccc-CCC-CCchHHHHHHHHHHHHHHh-hC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKT-DKI-EPLGEAREIFKFARAQARK-QA 77 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~-~~~-~~~~~~~~~~~~a~~~~~~-~~ 77 (518)
|++||++++|+||+++||||+|||+++++++|.++|++++..+.+|....... .+. .+......+++.+++.+.+ +.
T Consensus 166 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~p~a~~~~~~~~~~~~~k~~~~~~~~ 245 (715)
T PRK11730 166 WIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKARRQPKLEPLKLSKIEAMMSFTTAKGMVAQKAG 245 (715)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCccccccCcccccccccchhHHHHHHHHHHHHHHhhc
Confidence 57899999999999999999999999999999999999987532332221100 000 0001223355666666544 55
Q ss_pred CCCCcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCCCCCCCCCCCCCcccceEEEEEeCCc
Q 010109 78 PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL 157 (518)
Q Consensus 78 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~k~~~~~~~~~~~~~~~kV~VIGaG~ 157 (518)
++||++..++++++.+...+++++++.|.+.|..++.|+++++++++|+++|..++.+... ...+++|+||+|||+|+
T Consensus 246 ~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~~~~~~~~--~~~~~~i~~v~ViGaG~ 323 (715)
T PRK11730 246 KHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKKL--AKDAKPVKQAAVLGAGI 323 (715)
T ss_pred cCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCC--CCCccccceEEEECCch
Confidence 6899999999999999888999999999999999999999999999999999998765321 12456799999999999
Q ss_pred chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEecccC
Q 010109 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237 (518)
Q Consensus 158 MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~ 237 (518)
||++||..++.+|++|+++|++++.++++.+++.+.+++.+++|++++.+.+..+++|+++++++++++||+|||||||+
T Consensus 324 mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E~ 403 (715)
T PRK11730 324 MGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDVVVEAVVEN 403 (715)
T ss_pred hHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEecccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEEeCCCCcHHHHHHHHHHHHh
Q 010109 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 317 (518)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~g~~t~~e~~~~~~~l~~~ 317 (518)
+++|+++|++|++++++++||+||||++++++|++.+.+|+||+|+|||||++.|++||||+++.|++++++.+.++++.
T Consensus 404 l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~~~ 483 (715)
T PRK11730 404 PKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYASK 483 (715)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEeCCcccchhhhhHHHHHHHHHHHHHcCCCHHHHHHHHH-hcCCCccHHHHhhhcCchhHHHhhhhhhhhCCCC
Q 010109 318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (518)
Q Consensus 318 lGk~~v~v~d~~Gfi~nril~~~~~Ea~~l~~~G~~~~~ID~a~~-~~G~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~~ 396 (518)
+||+||+++|+||||+||++.++++||++|+++|++++|||.+++ ++|||||||+++|.+|||+++++.+.++..++++
T Consensus 484 lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~Ga~~e~ID~a~~~~~G~~~GP~~~~D~~Gld~~~~~~~~~~~~~~~~ 563 (715)
T PRK11730 484 MGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAEGFPDR 563 (715)
T ss_pred hCCceEEecCcCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCccCHHHHHHhhchHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999999999998 7999999999999999999999999999888775
Q ss_pred C--ccccHHHHHHHCCCCCccCCccceeccCC----CCCCCChHHHHHHHHHHhccCccCCccccccCCCHHHHHHHHHH
Q 010109 397 T--YKSMIIPIMQEDKRAGETTRKGFYLYDER----RKASPDPEVKKFIEKARSMSGVAIDPKSRQLTLTLRLLWAWVFH 470 (518)
Q Consensus 397 ~--~~~~~l~~lv~~G~~G~k~g~GfY~y~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~ 470 (518)
. .+++++++|+++|++|+|||+|||+|+++ .+...|+.+..++...+. . +..+ +.+||.+|++.
T Consensus 564 ~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~--~~~~i~nRll~ 633 (715)
T PRK11730 564 MKKDYRDAIDVLFEAKRFGQKNGKGFYRYEEDKKGKPKKEVDPAVYELLAPVVQ----P----KREF--SDEEIIARMMI 633 (715)
T ss_pred cccchhHHHHHHHHCCCCccccCCEeEecccCCCcccccCCCHHHHHHHHHhcc----c----cCCC--CHHHHHHHHHH
Confidence 3 24689999999999999999999999743 135578888877764321 1 1245 89999999999
Q ss_pred HHHHHHHHHhhccc-cCccccccccccccccCchh---hHHHHHHHHHhh
Q 010109 471 LTGEESCSGLTLLD-RSTFTHDWRNGQACTGNFLS---HVLSWLKELARE 516 (518)
Q Consensus 471 ~~~nea~~~l~~~~-~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~ 516 (518)
+++|||++|+++|+ ++++||| .++.+|+|||+ |||+++|.+|-+
T Consensus 634 ~~~~Ea~~ll~eGvva~~~dID--~a~~~g~G~p~~~gGPf~~~D~~Gld 681 (715)
T PRK11730 634 PMINEVVRCLEEGIVASPAEAD--MALVYGLGFPPFRGGAFRYLDTLGVA 681 (715)
T ss_pred HHHHHHHHHHhcCCcCCHHHHH--HHHHhCCCCCCCcCCHHHHHHHhCHH
Confidence 99999999999996 9999999 99999999987 999999999854
No 4
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=1.5e-93 Score=787.56 Aligned_cols=495 Identities=33% Similarity=0.497 Sum_probs=442.5
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCC--CCCchHHHHHHHHHHHHHHhhC-
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDK--IEPLGEAREIFKFARAQARKQA- 77 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~- 77 (518)
|+++|++++|++|+++||||+|||+++++++|.+||++. . +.++....... ..++......+..+.+++.++.
T Consensus 162 llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~--~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~ 237 (699)
T TIGR02440 162 MILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKG--K--PIRKPLSLQERLLEGTPLGRALLFDQAAKKTAKKTQ 237 (699)
T ss_pred HHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhC--C--CCCCCccchhhhcccCchhHHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999999999999999751 1 11000000000 0011122334555666666655
Q ss_pred CCCCcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCCCCCCCCCCCCCcccceEEEEEeCCc
Q 010109 78 PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL 157 (518)
Q Consensus 78 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~k~~~~~~~~~~~~~~~kV~VIGaG~ 157 (518)
++|||+.++|++++++...+++++++.|++.|..++.|+++++++++|+.+++.++.++. . ..+++++||+|||+|+
T Consensus 238 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG~ 314 (699)
T TIGR02440 238 GNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETGS-D--ATPAKIKKVGILGGGL 314 (699)
T ss_pred cCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCC-C--CCcccccEEEEECCcH
Confidence 489999999999999999999999999999999999999999999999999999876552 1 2346899999999999
Q ss_pred chHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEeccc
Q 010109 158 MGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236 (518)
Q Consensus 158 MG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e 236 (518)
||++||..++ ++|++|+++|++++.++++..++.+.+++.+++|.+++.+.+..+++|+++++++++++||+|||||||
T Consensus 315 mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~adlViEav~E 394 (699)
T TIGR02440 315 MGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFE 394 (699)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHhccCCEEEEeccc
Confidence 9999999998 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEEeCCCCcHHHHHHHHHHHH
Q 010109 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 316 (518)
Q Consensus 237 ~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~g~~t~~e~~~~~~~l~~ 316 (518)
++++|+++|++|++++++++||+||||++++++|++.+.+|+||+|+|||||++.|++||||+++.|++++++.+.++++
T Consensus 395 ~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~ 474 (699)
T TIGR02440 395 DLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAK 474 (699)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEeCCcccchhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHhhhcCchhHHHhhhhhhhhCCCC
Q 010109 317 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (518)
Q Consensus 317 ~lGk~~v~v~d~~Gfi~nril~~~~~Ea~~l~~~G~~~~~ID~a~~~~G~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~~ 396 (518)
.+||+||+++|.|||++||++.++++||++++++|+++++||.+++++|||||||+++|.+|+|+++++++.+++.++++
T Consensus 475 ~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~~~~dID~a~~~~G~p~GPf~l~D~vGld~~~~i~~~l~~~~~~~ 554 (699)
T TIGR02440 475 KQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEHIDKALVKFGFPVGPITLLDEVGIDVGAKISPILEAELGER 554 (699)
T ss_pred HcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCcCHHHHHHHhchHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CccccHHHHHHHCCCCCccCCccceeccCC-CCCCCChHHHHHHHHHHhccCccCCccccccCCCHHHHHHHHHHHHHHH
Q 010109 397 TYKSMIIPIMQEDKRAGETTRKGFYLYDER-RKASPDPEVKKFIEKARSMSGVAIDPKSRQLTLTLRLLWAWVFHLTGEE 475 (518)
Q Consensus 397 ~~~~~~l~~lv~~G~~G~k~g~GfY~y~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~ne 475 (518)
+.|++++++||++|++|+|||+|||+|+++ +++..|+.+..++. +.+. .++ +..+|++|++++++||
T Consensus 555 ~~~~~~l~~~v~~G~lG~ksg~GfY~y~~~~~~~~~~~~~~~~~~-------~~~~---~~~--~~g~v~~Rll~~~~~E 622 (699)
T TIGR02440 555 FKAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAVDESVYGLLG-------IKPG---VDK--EASAVAERCVMLMLNE 622 (699)
T ss_pred CCCcHHHHHHHHCCCCcccCCcEEEeCCCCCCcCCCCHHHHHHhC-------cCCC---CCC--CHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999853 45678888876652 1111 134 7899999999999999
Q ss_pred HHHHhhccc-cCccccccccccccccCchh---hHHHHHHHHHhh
Q 010109 476 SCSGLTLLD-RSTFTHDWRNGQACTGNFLS---HVLSWLKELARE 516 (518)
Q Consensus 476 a~~~l~~~~-~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~ 516 (518)
|++|+++|+ ++++||| .++.+|+|||. |||+++|.+|-+
T Consensus 623 a~~ll~eGvva~~~dID--~~~~~g~G~p~~~~Gpf~~~D~~Gld 665 (699)
T TIGR02440 623 AVRCLDEGVIRSPRDGD--IGAIFGIGFPPFLGGPFRYIDTLGAD 665 (699)
T ss_pred HHHHHHCCCcCCHHHHH--HHHHhcCCCCCCcCCHHHHHHHhCHH
Confidence 999999997 9999999 99999999996 999999999854
No 5
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=5.3e-93 Score=785.00 Aligned_cols=495 Identities=32% Similarity=0.487 Sum_probs=444.7
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCC--CCchHHHHHHHHHHHHHHhhCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKI--EPLGEAREIFKFARAQARKQAP 78 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~ 78 (518)
|+++|++++|+||+++||||+|||++++.++|.++|+++.... + +....... .++......+..++++++++.+
T Consensus 167 llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~-~---~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 242 (708)
T PRK11154 167 MILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPAR-R---PLPVRERLLEGNPLGRALLFKQARKKTLAKTQ 242 (708)
T ss_pred HHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCcc-C---cCCchhhhcccCchhHHHHHHHHHHHHHHhcc
Confidence 5789999999999999999999999999999999998842110 0 00000000 0111223467777888888765
Q ss_pred -CCCcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCCCCCCCCCCCCCcccceEEEEEeCCc
Q 010109 79 -NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL 157 (518)
Q Consensus 79 -~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~k~~~~~~~~~~~~~~~kV~VIGaG~ 157 (518)
+|||+..+|++++.+...+++++++.|++.|..++.|+++++++++|+.++..++.+... ..+++++||+|||+|+
T Consensus 243 g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~~~~~~~~~---~~~~~i~~v~ViGaG~ 319 (708)
T PRK11154 243 GNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKDTGSD---AKPRPVNKVGVLGGGL 319 (708)
T ss_pred cCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCC---CCCCcccEEEEECCch
Confidence 799999999999999889999999999999999999999999999999999988865531 2346899999999999
Q ss_pred chHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEeccc
Q 010109 158 MGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236 (518)
Q Consensus 158 MG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e 236 (518)
||++||..++ .+|++|+++|++++.++++..++.+.+++++++|.+++.+.+..+++|+++++++++++||+|||||||
T Consensus 320 mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E 399 (708)
T PRK11154 320 MGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVFE 399 (708)
T ss_pred hhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccCCEEeecccc
Confidence 9999999999 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEEeCCCCcHHHHHHHHHHHH
Q 010109 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 316 (518)
Q Consensus 237 ~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~g~~t~~e~~~~~~~l~~ 316 (518)
++++|+++|++|++++++++||+||||++++++|++.+.+|+||+|+|||||++.+++||||+++.|++++++.+..+++
T Consensus 400 ~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~ 479 (708)
T PRK11154 400 DLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAK 479 (708)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEeCCcccchhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHhhhcCchhHHHhhhhhhhhCCCC
Q 010109 317 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (518)
Q Consensus 317 ~lGk~~v~v~d~~Gfi~nril~~~~~Ea~~l~~~G~~~~~ID~a~~~~G~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~~ 396 (518)
.+||.|++++|+||||+||++.++++||++|+++|+++++||.+++++|||+|||+++|.+|+|+++++++.+++.++++
T Consensus 480 ~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv~~~dID~a~~~~G~p~GPf~~~D~~Gld~~~~i~~~l~~~~~~~ 559 (708)
T PRK11154 480 KQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGEPIEHIDAALVKFGFPVGPITLLDEVGIDVGTKIIPILEAALGER 559 (708)
T ss_pred HcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhhHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred CccccHHHHHHHCCCCCccCCccceeccCCC---CCCCChHHHHHHHHHHhccCccCCccccccCCCHHHHHHHHHHHHH
Q 010109 397 TYKSMIIPIMQEDKRAGETTRKGFYLYDERR---KASPDPEVKKFIEKARSMSGVAIDPKSRQLTLTLRLLWAWVFHLTG 473 (518)
Q Consensus 397 ~~~~~~l~~lv~~G~~G~k~g~GfY~y~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~ 473 (518)
+.+++++++|+++|++|+|||+|||+|++++ ++..|+++..++. +.+. ..+ +..+|.+|++.+++
T Consensus 560 ~~~~~~l~~~v~~g~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~-------~~~~---~~~--~~g~i~~Rll~~~~ 627 (708)
T PRK11154 560 FSAPAAFDKLLNDDRKGRKNGRGFYLYGQKGKKSKKQVDESVYPLLG-------ITPQ---SRL--SANEIAERCVMLML 627 (708)
T ss_pred CCCCHHHHHHHHCCCCcccCCceEEECCCCcccccccCCHHHHHHhc-------cCCC---CCC--CHHHHHHHHHHHHH
Confidence 7788999999999999999999999997532 3567887766552 1211 245 89999999999999
Q ss_pred HHHHHHhhccc-cCccccccccccccccCchh---hHHHHHHHHHhh
Q 010109 474 EESCSGLTLLD-RSTFTHDWRNGQACTGNFLS---HVLSWLKELARE 516 (518)
Q Consensus 474 nea~~~l~~~~-~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~ 516 (518)
|||++|+++|+ ++++||| .++.+|+|||. |||+++|.+|-+
T Consensus 628 nEa~~ll~eGvva~~~dID--~~~~~G~G~p~~~gGp~~~~D~~Gld 672 (708)
T PRK11154 628 NEAVRCLDEGIIRSARDGD--IGAVFGIGFPPFLGGPFRYMDSLGAG 672 (708)
T ss_pred HHHHHHHHCCCcCCHHHHH--HHHHhcCCCCCccCCHHHHHHHhCHH
Confidence 99999999997 9999999 99999999997 999999999854
No 6
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=100.00 E-value=3.8e-75 Score=617.08 Aligned_cols=368 Identities=30% Similarity=0.467 Sum_probs=327.2
Q ss_pred cceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 010109 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (518)
Q Consensus 146 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (518)
+++||+|||+|+||++||.+++++|++|++||++++.++++.+++++.+++++++|.+++++.+..+++++.++++++++
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~ 83 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA 83 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEEeCCCCcH
Q 010109 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~g~~t~~ 305 (518)
+||+|||||||++++|+.+|++++..+++++||+||||+++++++++.+.+|.|++|+|||+|++.|+|+||++|..|++
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~ 163 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAA 163 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchhHH
Q 010109 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (518)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nril~~~~~Ea~~l~~~G~-~~~~ID~a~~-~~G~p~GPf~~~D~~Gld~~~ 383 (518)
++++.+.++++.+||.|++++|+|||++||++.++++||+.++++|. +|++||.+++ ++|||||||+++|++|||+++
T Consensus 164 e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~Gldv~~ 243 (503)
T TIGR02279 164 EVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNF 243 (503)
T ss_pred HHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999985 9999999999 899999999999999999999
Q ss_pred HhhhhhhhhC-CC-CCccccHHHHHHHCCCCCccCCccceeccCCCC-CCC-----------------------------
Q 010109 384 ATGMQFIENF-PE-RTYKSMIIPIMQEDKRAGETTRKGFYLYDERRK-ASP----------------------------- 431 (518)
Q Consensus 384 ~~~~~~~~~~-~~-~~~~~~~l~~lv~~G~~G~k~g~GfY~y~~~~~-~~~----------------------------- 431 (518)
++++.+++.+ ++ ++.|++++++|+++|++|+|||+|||+|+++++ +.+
T Consensus 244 ~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (503)
T TIGR02279 244 AVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEAVVPLEAVSDSFSPRVTVVGDIGAAAPLLARLE 323 (503)
T ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeCCCCCCCCCCccccccccccceeecccccchhhHHHHHH
Confidence 9999988764 45 445678999999999999999999999986432 111
Q ss_pred ----------------------------------------ChHHHHHHHHHHhccCc--cCCc-----------------
Q 010109 432 ----------------------------------------DPEVKKFIEKARSMSGV--AIDP----------------- 452 (518)
Q Consensus 432 ----------------------------------------~~~~~~~~~~~~~~~~~--~~~~----------------- 452 (518)
|+.+..++...+...++ .+.+
T Consensus 324 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~vEv~~~~~Ts~e~~~~a~~~~~~~ 403 (503)
T TIGR02279 324 AAGIKVEKKSGRGVTQIGDALLALTDGRTAQARAIELARPNLVLFDLVLDYSTGKRIAIAAAAVNPDSATRKAIYYLQQA 403 (503)
T ss_pred hccccccccccccccccchhhhhhccccchhhhhhhcCCCCchHHHHHhhhcccCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 22222333222221111 1110
Q ss_pred -cccccCCCH--HHHHHHHHHHHHHHHHHHhhccccCccccccccccccccCchhhHHHHHHHHHhh
Q 010109 453 -KSRQLTLTL--RLLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 516 (518)
Q Consensus 453 -~~~~~~~~~--~~i~~r~~~~~~nea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (518)
+. ++.+.+ ..|++|++++++|||++++++|+++++||| .+|.+|.|||+|||+|+|.+|-.
T Consensus 404 Gk~-pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID--~a~~~g~G~P~GP~~~~D~~Gld 467 (503)
T TIGR02279 404 GKK-VLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDID--TAMRLGVNYPYGPLAWAAQLGWQ 467 (503)
T ss_pred CCe-EEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHHhCCCCCcCHHHHHHHhCHH
Confidence 00 001122 679999999999999999999999999999 99999999999999999999843
No 7
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4.7e-73 Score=603.04 Aligned_cols=370 Identities=29% Similarity=0.453 Sum_probs=326.3
Q ss_pred ccceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 010109 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (518)
Q Consensus 145 ~~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (518)
++++||+|||+|+||++||.+++++|++|++||++++.++++.+++++.+++++++|+++.++.+..+++++.+++++++
T Consensus 5 ~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~ 84 (507)
T PRK08268 5 PSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADL 84 (507)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred cCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEEeCCCCc
Q 010109 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (518)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~g~~t~ 304 (518)
.+||+|||||||+.++|+.+|++++..+++++||+|||||+++++++..+.+|+|++|+|||+|++.++|+||++|..|+
T Consensus 85 ~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts 164 (507)
T PRK08268 85 ADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATD 164 (507)
T ss_pred CCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchhH
Q 010109 305 PQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVA 382 (518)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nril~~~~~Ea~~l~~~G~-~~~~ID~a~~-~~G~p~GPf~~~D~~Gld~~ 382 (518)
+++++.+.++++.+||.|++++|++||++||++.++++||++|+++|. ++++||.+++ ++|||||||+++|++|+|+.
T Consensus 165 ~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~Gldv~ 244 (507)
T PRK08268 165 PAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDVN 244 (507)
T ss_pred HHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhchHHH
Confidence 999999999999999999999999999999999999999999999985 9999999998 79999999999999999999
Q ss_pred HHhhhhhhhhC-CC-CCccccHHHHHHHCCCCCccCCccceeccCCCC-CCCChH--------------------HHHHH
Q 010109 383 IATGMQFIENF-PE-RTYKSMIIPIMQEDKRAGETTRKGFYLYDERRK-ASPDPE--------------------VKKFI 439 (518)
Q Consensus 383 ~~~~~~~~~~~-~~-~~~~~~~l~~lv~~G~~G~k~g~GfY~y~~~~~-~~~~~~--------------------~~~~~ 439 (518)
+++.+.+++.+ ++ ++.+++++++|+++|++|+|||+|||+|+++++ +.++++ +.+++
T Consensus 245 ~~v~~~~~~~~~~~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (507)
T PRK08268 245 HAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAPPAALPPVWVSADVEGDLAALARLL 324 (507)
T ss_pred HHHHHHHHHHhcCCCcCCccHHHHHHHHCCCCccccCCeeeECCCCCCCCCCCccccccCccccccccccchhHHHHHHH
Confidence 99999888764 33 555778999999999999999999999975432 232222 22221
Q ss_pred HH----------------------------HHhccCccCC-----------ccccccCC---------------------
Q 010109 440 EK----------------------------ARSMSGVAID-----------PKSRQLTL--------------------- 459 (518)
Q Consensus 440 ~~----------------------------~~~~~~~~~~-----------~~~~~~~~--------------------- 459 (518)
.. .+......|. +.-+..++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~ 404 (507)
T PRK08268 325 ERLGATIETGEGPSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQD 404 (507)
T ss_pred HhhccccccccccccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 10 0000000000 00000001
Q ss_pred ---------CHHHHHHHHHHHHHHHHHHHhhccccCccccccccccccccCchhhHHHHHHHHHhh
Q 010109 460 ---------TLRLLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 516 (518)
Q Consensus 460 ---------~~~~i~~r~~~~~~nea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (518)
+...|.+|++++++|||++|+++|+++++||| .++.+|.|||+|||+|+|.+|-.
T Consensus 405 gk~pi~v~d~~Gfi~nRll~~~~nEa~~ll~eGvas~~dID--~a~~~g~G~p~GP~~~~D~~Gld 468 (507)
T PRK08268 405 GKAVSVIRDSPGFVAQRTVAMIVNEAADIAQQGIASPADID--LAMRLGLNYPLGPLAWGDRLGAA 468 (507)
T ss_pred CCeeEEeCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHHhcCCCCcCHHHHHHHhCHH
Confidence 45679999999999999999999999999999 99999999999999999999843
No 8
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=100.00 E-value=4.1e-72 Score=549.71 Aligned_cols=280 Identities=38% Similarity=0.667 Sum_probs=270.7
Q ss_pred cceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 010109 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (518)
Q Consensus 146 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (518)
.++||+|||+|+||++||..++.+|++|+++|++++.++++...+.+.+++++++|++++++.+..+++|++++++.+++
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~ 81 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK 81 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence 57899999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEEeCCCCcH
Q 010109 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~g~~t~~ 305 (518)
+||+|||||||++++|+++|++++.++++++||+||||+++|+++++.+++|+||+|+|||||++.|+|||||+|..|++
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~ 161 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSD 161 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchhHH
Q 010109 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (518)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nril~~~~~Ea~~l~~~G~-~~~~ID~a~~-~~G~p~GPf~~~D~~Gld~~~ 383 (518)
++++++.++.+.+||+|++++|+||||+||++.++++||++++.+|+ +|++||.+++ ++|||||||+++|++|+|+++
T Consensus 162 e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~ 241 (307)
T COG1250 162 ETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVML 241 (307)
T ss_pred HHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHhHHHHH
Confidence 99999999999999999888999999999999999999999999996 9999999999 899999999999999999999
Q ss_pred HhhhhhhhhCCCC-C-ccccHHHHHHHCCCCCccCCccceeccC
Q 010109 384 ATGMQFIENFPER-T-YKSMIIPIMQEDKRAGETTRKGFYLYDE 425 (518)
Q Consensus 384 ~~~~~~~~~~~~~-~-~~~~~l~~lv~~G~~G~k~g~GfY~y~~ 425 (518)
++++.+++.++++ + .+++++++|++.|++|+|||+|||+|++
T Consensus 242 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 242 HIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred HHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence 9999999888733 3 3678999999999999999999999975
No 9
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=4.9e-71 Score=500.62 Aligned_cols=281 Identities=36% Similarity=0.566 Sum_probs=267.0
Q ss_pred cccceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHH-----Hhhhcccccc
Q 010109 144 PRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKF-----EKTISLLTGV 218 (518)
Q Consensus 144 ~~~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~-----~~~~~~i~~~ 218 (518)
..+++.|+|||+|.||++||+..+.+|++|+++|.+++++.++.+.|.+.+.+..+++..+.... +..+++|..+
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~ 87 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTS 87 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHc
Confidence 35688999999999999999999999999999999999999999999999999998887665443 5678899999
Q ss_pred cCcc-cccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEE
Q 010109 219 LDYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI 297 (518)
Q Consensus 219 ~~~~-~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvei 297 (518)
++.+ .++++|+||||+.|+.++|+++|++|+..+++++|++||||++.+++++..+.+|.||.|+|||||++.|+||||
T Consensus 88 tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEV 167 (298)
T KOG2304|consen 88 TNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEV 167 (298)
T ss_pred CCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhh
Confidence 9875 478999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCcEEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhh
Q 010109 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLAD 375 (518)
Q Consensus 298 v~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nril~~~~~Ea~~l~~~G~-~~~~ID~a~~-~~G~p~GPf~~~D 375 (518)
|.++.||++++.....+.+.+||++|-++|.||||+||++.||++||+++++.|. +.+|||.+|+ |.|+||||||++|
T Consensus 168 ir~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~D 247 (298)
T KOG2304|consen 168 IRTDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELAD 247 (298)
T ss_pred hcCCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHH
Confidence 9999999999999999999999999999999999999999999999999999997 9999999999 9999999999999
Q ss_pred hcCchhHHHhhhhhhhhCCCC--CccccHHHHHHHCCCCCccCCccceecc
Q 010109 376 LVGFGVAIATGMQFIENFPER--TYKSMIIPIMQEDKRAGETTRKGFYLYD 424 (518)
Q Consensus 376 ~~Gld~~~~~~~~~~~~~~~~--~~~~~~l~~lv~~G~~G~k~g~GfY~y~ 424 (518)
.+|||++..+++.|++.++++ +.|+|++.++|++|++|||+|.|||+|.
T Consensus 248 yvGLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Yk 298 (298)
T KOG2304|consen 248 YVGLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKYK 298 (298)
T ss_pred HhhHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceecC
Confidence 999999999999999999753 5689999999999999999999999993
No 10
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1e-64 Score=504.14 Aligned_cols=278 Identities=33% Similarity=0.550 Sum_probs=269.3
Q ss_pred cceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 010109 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (518)
Q Consensus 146 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (518)
+++||+|||+|.||++||..++.+|++|++||++++.++++.+++.+.+++++++|.++..+....+++++.++++++++
T Consensus 4 ~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 83 (286)
T PRK07819 4 AIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDFA 83 (286)
T ss_pred CccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHhC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred CCCEEEEecccChHhHHHHHHHHhhhC-CCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEEeCCCCc
Q 010109 226 DVDMVIEAIIENVSLKQQIFADLEKYC-PPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~-~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~g~~t~ 304 (518)
+||+|||||||+.++|+++|+++++.+ ++++||+||||++++++++..+.+|+|++|+|||+|++.++++||+++..|+
T Consensus 84 ~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T~ 163 (286)
T PRK07819 84 DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTS 163 (286)
T ss_pred CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCCC
Confidence 999999999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hcCCcEEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchh
Q 010109 305 PQVIVDLLDIGK-KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGV 381 (518)
Q Consensus 305 ~e~~~~~~~l~~-~lGk~~v~v~d~~Gfi~nril~~~~~Ea~~l~~~G~-~~~~ID~a~~-~~G~p~GPf~~~D~~Gld~ 381 (518)
+++++.+.+++. .+||.|++++|.|||++||++.++++||++|+++|+ +|+|||.+++ ++|||+|||+++|.+|+|+
T Consensus 164 ~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~Gld~ 243 (286)
T PRK07819 164 EATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVGLDT 243 (286)
T ss_pred HHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhccHH
Confidence 999999999988 599999999999999999999999999999999997 9999999998 8999999999999999999
Q ss_pred HHHhhhhhhhhCCCC-CccccHHHHHHHCCCCCccCCccceec
Q 010109 382 AIATGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLY 423 (518)
Q Consensus 382 ~~~~~~~~~~~~~~~-~~~~~~l~~lv~~G~~G~k~g~GfY~y 423 (518)
+.++++.+++.++++ +.|++++++|+++|++|+|||+|||+|
T Consensus 244 ~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 244 VKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence 999999999998874 468899999999999999999999998
No 11
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4.2e-60 Score=473.11 Aligned_cols=279 Identities=27% Similarity=0.445 Sum_probs=264.2
Q ss_pred cceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHhhhcccccccCcc-c
Q 010109 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEK-FEKTISLLTGVLDYE-S 223 (518)
Q Consensus 146 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~-~ 223 (518)
+++||+|||+|.||++||..++.+|++|++||++++.++++.+.+.+.++...+.+.++..+ .+....+++.+++++ .
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 36899999999999999999999999999999999999999999988899888888888776 666778898888886 5
Q ss_pred ccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEEeCCCC
Q 010109 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (518)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~g~~t 303 (518)
+++||+||||+||+.++|+++|+++.+.+++++||+||||+++++++++.+.+|.||+|+|||+|++.++++||++++.|
T Consensus 82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t 161 (287)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGT 161 (287)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCcEEEeC-CcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCch
Q 010109 304 SPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG 380 (518)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v~-d~~Gfi~nril~~~~~Ea~~l~~~G~-~~~~ID~a~~-~~G~p~GPf~~~D~~Gld 380 (518)
++++++.+.++++.+|+.|+++. |.|||++||++.++++||++++++|+ +|+|||.+++ ++|||||||+++|.+|||
T Consensus 162 ~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld 241 (287)
T PRK08293 162 DPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLD 241 (287)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhchH
Confidence 99999999999999999999995 99999999999999999999999997 9999999998 999999999999999999
Q ss_pred hHHHhhhhhhhhCCCCCc--cccHHHHHHHCCCCCccCCccceecc
Q 010109 381 VAIATGMQFIENFPERTY--KSMIIPIMQEDKRAGETTRKGFYLYD 424 (518)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~--~~~~l~~lv~~G~~G~k~g~GfY~y~ 424 (518)
++.++++.+++.+++.++ +++++++|+++|++|+|||+|||+|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~ 287 (287)
T PRK08293 242 TAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP 287 (287)
T ss_pred HHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCccccCc
Confidence 999999999999888653 78999999999999999999999994
No 12
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.4e-59 Score=469.74 Aligned_cols=281 Identities=29% Similarity=0.517 Sum_probs=268.1
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (518)
++||+|||+|.||.+||..|+++|++|++||++++.++++.+++...++..++.|.++..+.+....+++.++++ +.++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 468999999999999999999999999999999999999998888888888889999988888888899888888 4689
Q ss_pred CCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEEeCCCCcH
Q 010109 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~g~~t~~ 305 (518)
+||+||+|+|++.++|+.+|+++.+.+++++|++|||||++++++++.+.+|.|++|+|||+|++.++++|+++++.|++
T Consensus 81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~ 160 (288)
T PRK09260 81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSD 160 (288)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchhHH
Q 010109 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (518)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nril~~~~~Ea~~l~~~G~-~~~~ID~a~~-~~G~p~GPf~~~D~~Gld~~~ 383 (518)
++++.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ +++|||.+++ ++|||+|||+++|.+|+|++.
T Consensus 161 ~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~ 240 (288)
T PRK09260 161 ETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL 240 (288)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999997 9999999999 999999999999999999999
Q ss_pred HhhhhhhhhCCCCCccccHHHHHHHCCCCCccCCccceeccCCC
Q 010109 384 ATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERR 427 (518)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~l~~lv~~G~~G~k~g~GfY~y~~~~ 427 (518)
++.+.+++.+++++.|++++.+|+++|++|+|||+|||+|++++
T Consensus 241 ~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 284 (288)
T PRK09260 241 NNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNRE 284 (288)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCCCCccccCCEEEECCCCC
Confidence 99999999888888888999999999999999999999998744
No 13
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4e-59 Score=465.27 Aligned_cols=277 Identities=35% Similarity=0.610 Sum_probs=266.9
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (518)
|+||+|||+|.||.+||..++++|++|+++|++++.++++.+++++.++...+.|.++..+......+++.+++++.+++
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLKD 82 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhcc
Confidence 67999999999999999999999999999999999999999999999999999999998888888889988888888999
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEEeCCCCcHH
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQ 306 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~g~~t~~e 306 (518)
||+||||+||++++|+++|+++.++++++++|+||||+++++.+++.+.+|.|++|+|||+|++.++++|++++..|+++
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~e 162 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDA 162 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchhHHH
Q 010109 307 VIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIA 384 (518)
Q Consensus 307 ~~~~~~~l~~~lGk~~v~v~d~~Gfi~nril~~~~~Ea~~l~~~G~-~~~~ID~a~~-~~G~p~GPf~~~D~~Gld~~~~ 384 (518)
+++.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ +|+|||.+++ ++|||+|||+++|.+|+|++.+
T Consensus 163 ~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~~ 242 (282)
T PRK05808 163 THEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCLA 242 (282)
T ss_pred HHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHHH
Confidence 9999999999999999999999999999999999999999999997 9999999999 9999999999999999999999
Q ss_pred hhhhhhhhCCCC-CccccHHHHHHHCCCCCccCCccceec
Q 010109 385 TGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLY 423 (518)
Q Consensus 385 ~~~~~~~~~~~~-~~~~~~l~~lv~~G~~G~k~g~GfY~y 423 (518)
+++.+++.++++ +.|++++++|+++|++|+|+|+|||+|
T Consensus 243 ~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y 282 (282)
T PRK05808 243 IMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY 282 (282)
T ss_pred HHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCcccCC
Confidence 999999998864 457889999999999999999999998
No 14
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=6.5e-59 Score=465.62 Aligned_cols=278 Identities=32% Similarity=0.553 Sum_probs=263.6
Q ss_pred cceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHH---HHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 010109 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRA---NLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (518)
Q Consensus 146 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (518)
+++||+|||+|.||++||..++++|++|++||++++.++.+.+++++ .++..+++|.++..+.+....++..+++++
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 81 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE 81 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence 46899999999999999999999999999999999999988887776 467778889988888888888998888888
Q ss_pred cccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEEeCCC
Q 010109 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQ 302 (518)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~g~~ 302 (518)
.+++||+||||+|++.++|+++|+++++.+++++||+||||+++++++++.+.+|.|++|+|||+|++.++++|++++..
T Consensus 82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~ 161 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAAL 161 (291)
T ss_pred HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcCCcEEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCch
Q 010109 303 TSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG 380 (518)
Q Consensus 303 t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nril~~~~~Ea~~l~~~G~-~~~~ID~a~~-~~G~p~GPf~~~D~~Gld 380 (518)
|++++++.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ +++|||.+++ ++|||||||+++|.+|||
T Consensus 162 T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~ 241 (291)
T PRK06035 162 TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGID 241 (291)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999997 9999999998 999999999999999999
Q ss_pred hHHHhhhhhhhhCCCCC-ccccHHHHHHHCCCCCccC-----Cccceec
Q 010109 381 VAIATGMQFIENFPERT-YKSMIIPIMQEDKRAGETT-----RKGFYLY 423 (518)
Q Consensus 381 ~~~~~~~~~~~~~~~~~-~~~~~l~~lv~~G~~G~k~-----g~GfY~y 423 (518)
++.++++.+++.+++++ .|++++++|+++|++|+|| |+|||+|
T Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~y 290 (291)
T PRK06035 242 TVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKGGWFDY 290 (291)
T ss_pred HHHHHHHHHHHHcCCCcCCccHHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence 99999999999998754 5778999999999999999 9999998
No 15
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=100.00 E-value=1.6e-58 Score=463.90 Aligned_cols=282 Identities=31% Similarity=0.554 Sum_probs=269.8
Q ss_pred cceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 010109 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (518)
Q Consensus 146 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (518)
+++||+|||+|.||.+||..|+++|++|++||++++.++.+.+++++.++++++.|.++.++.+..+++++++++++.++
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR 82 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence 47899999999999999999999999999999999999999999999999999999999988888888888888888899
Q ss_pred CCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEEeCCCCcH
Q 010109 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~g~~t~~ 305 (518)
+||+|||||+|++++|+.+|+++.+.+++++||+||||+++++++++.+.++.+++|+|||+|++.++++|++++..|++
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~ 162 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSD 162 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchhHH
Q 010109 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (518)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nril~~~~~Ea~~l~~~G~-~~~~ID~a~~-~~G~p~GPf~~~D~~Gld~~~ 383 (518)
++++.+.++++.+|+.+++++|.+||++||++.++++||++++++|+ ++++||.+++ ++|||+|||+++|.+|+|++.
T Consensus 163 e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~~ 242 (295)
T PLN02545 163 EVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCL 242 (295)
T ss_pred HHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhchHHHH
Confidence 99999999999999999999999999999999999999999999997 9999999999 999999999999999999999
Q ss_pred HhhhhhhhhCCCC-CccccHHHHHHHCCCCCccCCccceeccCCC
Q 010109 384 ATGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLYDERR 427 (518)
Q Consensus 384 ~~~~~~~~~~~~~-~~~~~~l~~lv~~G~~G~k~g~GfY~y~~~~ 427 (518)
++++.+++.+++. +.|++++++|+++|++|+|+|+|||+|++++
T Consensus 243 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 287 (295)
T PLN02545 243 SIMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKK 287 (295)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCcccCCCeeeECCCCC
Confidence 9999999998874 4688999999999999999999999997654
No 16
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.8e-58 Score=460.49 Aligned_cols=281 Identities=32% Similarity=0.528 Sum_probs=267.8
Q ss_pred cceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 010109 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (518)
Q Consensus 146 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (518)
+++||+|||+|.||.+||..++.+|++|++||++++.++++.+++.+.++..++.|.++..+.+....+++.++++++++
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 82 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDLA 82 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHhc
Confidence 46899999999999999999999999999999999999999999999999999899999888888888899888898899
Q ss_pred CCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEEeCCCCcH
Q 010109 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~g~~t~~ 305 (518)
+||+||+||||+.++|+.+|+++.+.+++++||+||||+++++++++.+.+|.|++|+|||+|++.++++|++++..|++
T Consensus 83 ~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~~ 162 (292)
T PRK07530 83 DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDE 162 (292)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchhHH
Q 010109 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (518)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nril~~~~~Ea~~l~~~G~-~~~~ID~a~~-~~G~p~GPf~~~D~~Gld~~~ 383 (518)
++++.+.++++.+|+.|++++|.|||++||++.++++|+++++++|+ ++++||.+++ ++|||+|||+++|.+|+|++.
T Consensus 163 ~~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~~ 242 (292)
T PRK07530 163 ATFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTCL 242 (292)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999998 9999999999 999999999999999999999
Q ss_pred HhhhhhhhhCCCC-CccccHHHHHHHCCCCCccCCccceeccCC
Q 010109 384 ATGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLYDER 426 (518)
Q Consensus 384 ~~~~~~~~~~~~~-~~~~~~l~~lv~~G~~G~k~g~GfY~y~~~ 426 (518)
++.+.+++.++++ +.|++++.+|++.|++|+|+|+|||+|+++
T Consensus 243 ~~~~~~~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 286 (292)
T PRK07530 243 SIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDYRGE 286 (292)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeeCCCC
Confidence 9999999988864 457899999999999999999999999653
No 17
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.6e-57 Score=455.32 Aligned_cols=268 Identities=26% Similarity=0.393 Sum_probs=255.4
Q ss_pred chHHHHHHHHhCCCcEEEEeCCHH-------HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC---cccccCC
Q 010109 158 MGSGIATALILSNYPVILKEVNEK-------FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD---YESFKDV 227 (518)
Q Consensus 158 MG~~iA~~la~~G~~V~l~d~~~~-------~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~---~~~~~~a 227 (518)
||++||..++.+|++|+++|++++ .++++.+++.+.+++++++|.+++++.+..+++|+++++ .+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 899999999999999999999995 477799999999999999999999999999999998865 2568999
Q ss_pred CEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEEeCCCCcHHH
Q 010109 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQV 307 (518)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~g~~t~~e~ 307 (518)
|+|||||||+.++|+.+|++|++.+++++||+||||++++++|++.+.+|+|++|+|||+|++.|++|||++++.|++++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~ 160 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV 160 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHhhhcCchhH
Q 010109 308 IVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVGFGVA 382 (518)
Q Consensus 308 ~~~~~~l~~~lGk~~v~v~d~~Gfi~nril~~~~~Ea~~l~~~G~-~~~~ID~a~~-~~G~p---~GPf~~~D~~Gld~~ 382 (518)
++.+.++++.+|+.|++++|.+||++||++.++++|++.++++|+ ++++||.+++ ++||| +|||+++|.+|+|++
T Consensus 161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~ 240 (314)
T PRK08269 161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDIL 240 (314)
T ss_pred HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999999999985 9999999998 99999 699999999999999
Q ss_pred HHhhhhhhhhCCC-CCccccHHHHHHHCCCCCccCCccceeccC
Q 010109 383 IATGMQFIENFPE-RTYKSMIIPIMQEDKRAGETTRKGFYLYDE 425 (518)
Q Consensus 383 ~~~~~~~~~~~~~-~~~~~~~l~~lv~~G~~G~k~g~GfY~y~~ 425 (518)
.++++.+++.+++ ++.|++++++|+++|++|+|||+|||+|++
T Consensus 241 ~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~ 284 (314)
T PRK08269 241 YYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAG 284 (314)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCC
Confidence 9999999988887 566889999999999999999999999965
No 18
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=6.8e-57 Score=450.35 Aligned_cols=277 Identities=22% Similarity=0.303 Sum_probs=247.8
Q ss_pred ccceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-c
Q 010109 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-S 223 (518)
Q Consensus 145 ~~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 223 (518)
.+++||+|||+|+||++||.+|+.+|++|++||++++.++++..++.+.++.+.+.| ++. ....++++.+++++ .
T Consensus 5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~-~~~---~~~~~~i~~~~~l~~a 80 (321)
T PRK07066 5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQG-LAP---GASPARLRFVATIEAC 80 (321)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CCh---hhHHhhceecCCHHHH
Confidence 457899999999999999999999999999999999999999999999998888877 443 23446888888884 5
Q ss_pred ccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEEeCCCC
Q 010109 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (518)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~g~~t 303 (518)
+++||+|||||||++++|+++|+++++.+++++||+||||+++++++++.+.+|+||+|+|||||++.+|+||||+++.|
T Consensus 81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T 160 (321)
T PRK07066 81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERT 160 (321)
T ss_pred hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCcEEEe-CCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHhhhc
Q 010109 304 SPQVIVDLLDIGKKIKKTPIVV-GNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLV 377 (518)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v-~d~~Gfi~nril~~~~~Ea~~l~~~G~-~~~~ID~a~~-~~G~p---~GPf~~~D~~ 377 (518)
++++++.+.+|++.+||+||++ +|.||||+||++.++++||++++++|+ |++|||++|+ |+|+| +|||+++|++
T Consensus 161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~ 240 (321)
T PRK07066 161 APEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLA 240 (321)
T ss_pred CHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhc
Confidence 9999999999999999999999 599999999999999999999999997 9999999999 99987 9999999999
Q ss_pred Cchh-HHHhhhhhhhhCCC---CCccccHHHHHHH------CCCCCccCCccceeccC
Q 010109 378 GFGV-AIATGMQFIENFPE---RTYKSMIIPIMQE------DKRAGETTRKGFYLYDE 425 (518)
Q Consensus 378 Gld~-~~~~~~~~~~~~~~---~~~~~~~l~~lv~------~G~~G~k~g~GfY~y~~ 425 (518)
|+|. +.+.++++.+.+.+ .+.++++...|++ ++.+|.++..+||.|.+
T Consensus 241 Gld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd 298 (321)
T PRK07066 241 GGDAGMRHFMQQFGPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALERYRD 298 (321)
T ss_pred ChHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9998 34444555444321 1223456677776 68999999999999965
No 19
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=6.3e-58 Score=445.98 Aligned_cols=344 Identities=36% Similarity=0.513 Sum_probs=312.7
Q ss_pred chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEecccC
Q 010109 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237 (518)
Q Consensus 158 MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~ 237 (518)
||++||.++..+|++|++.|.|...++++..++...+.+.+++++++..+......++..+.|+..+++||+|||+|+|+
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed 80 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED 80 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEEeCCCCcHHHHHHHHHHHHh
Q 010109 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 317 (518)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~g~~t~~e~~~~~~~l~~~ 317 (518)
+++|+++|.+|++++++++|++||||+++++.+++.+++|++++|+|||+|++.|+|+||+.+..||..++..+.+....
T Consensus 81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~ 160 (380)
T KOG1683|consen 81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP 160 (380)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEeCCcccchhhhhHHHHHHHHHHHHHc-CCCHHHHHHHHHhcCCCccHHHHhhhcCchhHHHhhhhhhhhCCCC
Q 010109 318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVER-GTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (518)
Q Consensus 318 lGk~~v~v~d~~Gfi~nril~~~~~Ea~~l~~~-G~~~~~ID~a~~~~G~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~~ 396 (518)
.|+.|++|++++||.+||++.+|.+++.+++.+ |++|.++|.....|||||||+.+.|..|+|+..++...+...++++
T Consensus 161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccch
Confidence 999999999999999999999999999998877 9999999999999999999999999999999888776655554433
Q ss_pred CccccHHHHHHHCCCCCccCCccceeccCCCCCCCCh-HHHHHHHHHHhccCccCCccccccCCCHHHHHHHHHHHHHHH
Q 010109 397 TYKSMIIPIMQEDKRAGETTRKGFYLYDERRKASPDP-EVKKFIEKARSMSGVAIDPKSRQLTLTLRLLWAWVFHLTGEE 475 (518)
Q Consensus 397 ~~~~~~l~~lv~~G~~G~k~g~GfY~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~ne 475 (518)
+.+.|++.|+.|+|||+|||.|+++.++..++ +..+.+.+.+ +.++++.. +++|+++|++.+++||
T Consensus 241 -----~~eel~~~~~~g~kT~kg~y~y~~~l~k~~~~~~~~~~~r~l~------~~~~~r~~--~~ed~v~~~~~p~VnE 307 (380)
T KOG1683|consen 241 -----IEEELLEKGRAGIKTGKGIYPYARGLTKKMKRDEMEALLRRLS------LTPNPRVA--DDEDFVEFLLSPFVNE 307 (380)
T ss_pred -----hHHHHHHHHhhhhhccCcccccccccccCCChhhHHHHHHHhc------cCCCcccC--CHHHHHHHHhhHHHHH
Confidence 78899999999999999999999875544444 4444444332 22233455 9999999999999999
Q ss_pred HHHHhhccc-cCccccccccccccccCchh---hHHHHHHHHHhh
Q 010109 476 SCSGLTLLD-RSTFTHDWRNGQACTGNFLS---HVLSWLKELARE 516 (518)
Q Consensus 476 a~~~l~~~~-~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~ 516 (518)
|++|++||+ +++.++| -+..+|.|||. ||+.|.|..|.+
T Consensus 308 al~~l~EGi~~~~~~~D--i~~v~G~gfp~~~GGp~~~~d~~G~~ 350 (380)
T KOG1683|consen 308 ALRCLLEGLKASPSDGD--IASVFGLGFPPFRGGPMRFVDLYGAD 350 (380)
T ss_pred HHHHHHHHHhcCccccc--eeeeeccCCCCcCCCceeeeeccChH
Confidence 999999977 7789999 66678999987 999999988864
No 20
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4.4e-49 Score=398.63 Aligned_cols=277 Identities=31% Similarity=0.535 Sum_probs=247.5
Q ss_pred cceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cc
Q 010109 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF 224 (518)
Q Consensus 146 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 224 (518)
+++||+|||+|.||++||..|+++|++|+++|++++.++.+.+.+.+.+......+. ......+++.+++++ .+
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAAV 77 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHHh
Confidence 478999999999999999999999999999999999988877665544433222211 012334566666775 48
Q ss_pred cCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEEeCCCCc
Q 010109 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (518)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~g~~t~ 304 (518)
++||+||+|||++.++|+.+++++...++++++|+|+||+++++++++.+.++.+|+|+||++|++.++++++++++.++
T Consensus 78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~ 157 (311)
T PRK06130 78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTS 157 (311)
T ss_pred ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999988888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEeC-CcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHhhhcC
Q 010109 305 PQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVG 378 (518)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~v~v~-d~~Gfi~nril~~~~~Ea~~l~~~G~-~~~~ID~a~~-~~G~p---~GPf~~~D~~G 378 (518)
+++++.+.++++.+|+.+++++ +.+||++||++.++++||+.++++|. ++++||.+++ ++||| +|||+++|.+|
T Consensus 158 ~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~G 237 (311)
T PRK06130 158 PQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNG 237 (311)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhhc
Confidence 9999999999999999999996 88999999999999999999999985 9999999998 99999 79999999999
Q ss_pred chhHHHhhhhhhhhCCCCCccccHHHHHHHCCCCCccCCccceeccCCC
Q 010109 379 FGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERR 427 (518)
Q Consensus 379 ld~~~~~~~~~~~~~~~~~~~~~~l~~lv~~G~~G~k~g~GfY~y~~~~ 427 (518)
+|++.+++..+++.+++++.|++++++|+++|++|+|+|+|||+|++++
T Consensus 238 l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~~~g~gfy~y~~~~ 286 (311)
T PRK06130 238 LDVHLAVASYLYQDLENRTTPSPLLEEKVEAGELGAKSGQGFYAWPPER 286 (311)
T ss_pred cchHHHHHHHHHHhcCCcCCCCHHHHHHHHcCCccccCCCcCccCCCCC
Confidence 9999999999999998887788999999999999999999999997643
No 21
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.1e-41 Score=343.54 Aligned_cols=263 Identities=24% Similarity=0.337 Sum_probs=244.6
Q ss_pred cceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cc
Q 010109 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF 224 (518)
Q Consensus 146 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 224 (518)
+|++|+|||+|.||++||..|+++|++|++||++++.++.+..+++..++.+.+.|.++..+......++..+++++ .+
T Consensus 1 ~~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~ 80 (308)
T PRK06129 1 PMGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAV 80 (308)
T ss_pred CCcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhh
Confidence 36799999999999999999999999999999999999999999999999999999998887888888888888885 57
Q ss_pred cCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEEeCCCCc
Q 010109 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (518)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~g~~t~ 304 (518)
++||+||+|+|++.++|+.+|+++.+.++++++++||||+++++++++.+.++.++++.|||+|++.++++|++++..|+
T Consensus 81 ~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~ 160 (308)
T PRK06129 81 ADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTA 160 (308)
T ss_pred CCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEeC-CcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHhhhc-
Q 010109 305 PQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLV- 377 (518)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~v~v~-d~~Gfi~nril~~~~~Ea~~l~~~G~-~~~~ID~a~~-~~G~p---~GPf~~~D~~- 377 (518)
+++++.+.++++.+|+.|++++ +.+||++||++.++++||+.++++|. |+++||.+++ ++|++ +|||++.|..
T Consensus 161 ~~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~ 240 (308)
T PRK06129 161 PATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNA 240 (308)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhccc
Confidence 9999999999999999999996 78999999999999999999999885 9999999999 89988 8999999987
Q ss_pred --CchhHHHhhhhhhhhCCCCC-ccccHHHHHHH
Q 010109 378 --GFGVAIATGMQFIENFPERT-YKSMIIPIMQE 408 (518)
Q Consensus 378 --Gld~~~~~~~~~~~~~~~~~-~~~~~l~~lv~ 408 (518)
|++........++..+++.. .|+|++++|++
T Consensus 241 ~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~ 274 (308)
T PRK06129 241 PGGVADYAQRYGPMYRRMAAERGQPVPWDGELVA 274 (308)
T ss_pred cccHHHHHHHHHHHHHhhccccCCCchhhHHHHH
Confidence 89999999888888887754 47788888887
No 22
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=100.00 E-value=4.2e-41 Score=311.87 Aligned_cols=180 Identities=38% Similarity=0.648 Sum_probs=162.0
Q ss_pred EEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCC
Q 010109 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (518)
Q Consensus 149 kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 228 (518)
||+|||+|.||++||..++.+|++|++||++++.++.+.+++.+.++..+++|.+++++.+..+++++++++++++.+||
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad 80 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD 80 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred EEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEEeCCCCcHHHH
Q 010109 229 MVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVI 308 (518)
Q Consensus 229 lVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~g~~t~~e~~ 308 (518)
+||||+||++++|+++|++|++.+++++||+||||++++++|++.+.+|+||+|+|||+|++.+|+|||++++.|+++++
T Consensus 81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~ 160 (180)
T PF02737_consen 81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETV 160 (180)
T ss_dssp EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHH
T ss_pred eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEeCCc
Q 010109 309 VDLLDIGKKIKKTPIVVGNC 328 (518)
Q Consensus 309 ~~~~~l~~~lGk~~v~v~d~ 328 (518)
+.+.++++.+||.|++++|+
T Consensus 161 ~~~~~~~~~~gk~pv~v~D~ 180 (180)
T PF02737_consen 161 DRVRALLRSLGKTPVVVKDT 180 (180)
T ss_dssp HHHHHHHHHTT-EEEEEES-
T ss_pred HHHHHHHHHCCCEEEEecCC
Confidence 99999999999999999874
No 23
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=100.00 E-value=8.5e-38 Score=333.57 Aligned_cols=243 Identities=23% Similarity=0.319 Sum_probs=205.2
Q ss_pred cceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cc
Q 010109 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF 224 (518)
Q Consensus 146 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 224 (518)
.++||+|||+|+||++||..|+++|++|++||+++++++...+.+....... +.+.... ....++++++++++ .+
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~---~~l~~~~-~~~~g~i~~~~~~~ea~ 78 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAY---AMLTDAP-LPPEGRLTFCASLAEAV 78 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHH---hhhccch-hhhhhceEeeCCHHHHh
Confidence 3679999999999999999999999999999999998876433222211111 1111111 11224566777774 68
Q ss_pred cCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEEeCCCCc
Q 010109 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (518)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~g~~t~ 304 (518)
++||+||||+||+.++|+++|+++.+.+++++||+||||+++++++++.+.+|.++++.|||||++.++++|+++++.|+
T Consensus 79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~ 158 (495)
T PRK07531 79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTS 158 (495)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEeC-CcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHhhhcC
Q 010109 305 PQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVG 378 (518)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~v~v~-d~~Gfi~nril~~~~~Ea~~l~~~G~-~~~~ID~a~~-~~G~p---~GPf~~~D~~G 378 (518)
+++++.+.++++.+|+.|++++ +.+||++||++.++++||+.|+++|. |+++||.+++ ++|+. ||||++.|+.|
T Consensus 159 ~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g 238 (495)
T PRK07531 159 PETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAG 238 (495)
T ss_pred HHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcC
Confidence 9999999999999999999996 89999999999999999999999875 9999999999 77764 89999999999
Q ss_pred chh-HHHhhhhhhhh
Q 010109 379 FGV-AIATGMQFIEN 392 (518)
Q Consensus 379 ld~-~~~~~~~~~~~ 392 (518)
++. +.+.++++.+.
T Consensus 239 ~~~g~~~~~~~~~~~ 253 (495)
T PRK07531 239 GEAGMRHFLAQFGPC 253 (495)
T ss_pred cHHHHHHHHHHhchh
Confidence 654 44455554443
No 24
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=9e-35 Score=264.53 Aligned_cols=229 Identities=28% Similarity=0.462 Sum_probs=212.2
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHc----CCCCHHHHHhhhcccccccCcc
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKK----GKMTQEKFEKTISLLTGVLDYE 222 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~----g~~~~~~~~~~~~~i~~~~~~~ 222 (518)
..||+|+|.|..|+++|..|++.||+|.+||+.++.++.+.+.+++.+.++-++ |.++. ++.+..|+.+++++
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa---~eqla~is~t~~l~ 79 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSA---DEQLALISGTTSLN 79 (313)
T ss_pred ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccH---HHHHHHHhCCccHH
Confidence 469999999999999999999999999999999999999999999999887664 55664 55678899999985
Q ss_pred -cccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEEeCC
Q 010109 223 -SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTN 301 (518)
Q Consensus 223 -~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~g~ 301 (518)
.++++=.|-|||||++++|+++|++|++.+.+.+|++|+||++.++.+.+.+.+.++++-.||.||+...||+|+|+.+
T Consensus 80 E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaP 159 (313)
T KOG2305|consen 80 ELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAP 159 (313)
T ss_pred HHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCcEEEeC-CcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHhh
Q 010109 302 QTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLAD 375 (518)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~v~v~-d~~Gfi~nril~~~~~Ea~~l~~~G~-~~~~ID~a~~-~~G~p---~GPf~~~D 375 (518)
-|+++++++.+++++.+|..||... +..||.+||+.++++||..+++..|+ +..|+|.+|. |+|.. .||+|.+.
T Consensus 160 wTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~H 239 (313)
T KOG2305|consen 160 WTSPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETAH 239 (313)
T ss_pred CCChhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhhh
Confidence 9999999999999999999999885 68899999999999999999999998 9999999999 99976 49999887
Q ss_pred hcC
Q 010109 376 LVG 378 (518)
Q Consensus 376 ~~G 378 (518)
+--
T Consensus 240 LNA 242 (313)
T KOG2305|consen 240 LNA 242 (313)
T ss_pred cCc
Confidence 653
No 25
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.96 E-value=1.7e-29 Score=269.39 Aligned_cols=165 Identities=15% Similarity=0.103 Sum_probs=153.2
Q ss_pred hCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCcEEEeCCccc
Q 010109 251 YCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (518)
Q Consensus 251 ~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G 330 (518)
.+.+++++++++++.+.+..+....+|+|++|+|||+|++.++++||+++..|++++++.+.++++.+||.|++++|++|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~G 416 (507)
T PRK08268 337 PSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPG 416 (507)
T ss_pred cccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCcc
Confidence 45678888888887777777766778999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchhHHHhhhhhhhhCCC-CCccccHHHHHH
Q 010109 331 FAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPE-RTYKSMIIPIMQ 407 (518)
Q Consensus 331 fi~nril~~~~~Ea~~l~~~G~-~~~~ID~a~~-~~G~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~-~~~~~~~l~~lv 407 (518)
||+||++.+++|||++++++|+ +++|||.+|+ ++|||+|||+|+|.+|+|+++++++.+++.+++ ++.|++++++|+
T Consensus 417 fi~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~ll~~~v 496 (507)
T PRK08268 417 FVAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRRA 496 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcCHHHHHHH
Confidence 9999999999999999999998 9999999999 999999999999999999999999999999986 566889999999
Q ss_pred HCCCCCccCCcccee
Q 010109 408 EDKRAGETTRKGFYL 422 (518)
Q Consensus 408 ~~G~~G~k~g~GfY~ 422 (518)
++| ..||.
T Consensus 497 ~~G-------~~~~~ 504 (507)
T PRK08268 497 ALG-------LSLRS 504 (507)
T ss_pred HcC-------CCcCC
Confidence 985 66865
No 26
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.94 E-value=5.3e-27 Score=195.64 Aligned_cols=94 Identities=40% Similarity=0.610 Sum_probs=87.3
Q ss_pred cchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchhHHHhhhhhhhhCCCCC-ccccHHHHH
Q 010109 330 GFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPERT-YKSMIIPIM 406 (518)
Q Consensus 330 Gfi~nril~~~~~Ea~~l~~~G~-~~~~ID~a~~-~~G~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~~~-~~~~~l~~l 406 (518)
|||+||++.++++||++++++|+ +|++||.+++ ++|||+|||+++|.+|+|++.++++.+++.++++. .|++++++|
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~m 80 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLKEM 80 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHHHH
Confidence 89999999999999999999996 9999999999 79999999999999999999999999999998874 468999999
Q ss_pred HHCCCCCccCCccceec
Q 010109 407 QEDKRAGETTRKGFYLY 423 (518)
Q Consensus 407 v~~G~~G~k~g~GfY~y 423 (518)
+++|++|+|+|+|||+|
T Consensus 81 v~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 81 VEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHTT--BGGGTBSSSBE
T ss_pred HHCCCCcCcCCCcceeC
Confidence 99999999999999998
No 27
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.91 E-value=7.9e-23 Score=217.57 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=112.9
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCcEEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccH
Q 010109 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGP 370 (518)
Q Consensus 293 ~lveiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nril~~~~~Ea~~l~~~G~-~~~~ID~a~~-~~G~p~GP 370 (518)
..+||+++..|++++++.+.++++.+||.|++++|.||||+||++.+++|||++++++|+ +++|||.+|+ ++|||+||
T Consensus 378 ~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~GP 457 (503)
T TIGR02279 378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPYGP 457 (503)
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCcCH
Confidence 578999999999999999999999999999999999999999999999999999999998 8999999998 99999999
Q ss_pred HHHhhhcCchhHHHhhhhhhhhCCC-CCccccHHHHHHHCC
Q 010109 371 FRLADLVGFGVAIATGMQFIENFPE-RTYKSMIIPIMQEDK 410 (518)
Q Consensus 371 f~~~D~~Gld~~~~~~~~~~~~~~~-~~~~~~~l~~lv~~G 410 (518)
|+|+|.+|+|+++++++++++.+++ ++.|++++++|+..|
T Consensus 458 ~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~~L~~~v~~g 498 (503)
T TIGR02279 458 LAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRRRALLG 498 (503)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCHHHHHHHHcC
Confidence 9999999999999999999999985 566889999999986
No 28
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.78 E-value=1.1e-17 Score=163.48 Aligned_cols=186 Identities=20% Similarity=0.255 Sum_probs=141.6
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (518)
+||++||+|.||.+||.+|.++||+|++||+++++.... ..+.|... ..+..+.+++|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~----------~~~~Ga~~------------a~s~~eaa~~a 58 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAEL----------LAAAGATV------------AASPAEAAAEA 58 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHH----------HHHcCCcc------------cCCHHHHHHhC
Confidence 489999999999999999999999999999999984321 12334321 22334678999
Q ss_pred CEEEEecccChHhHHHHHH--HHhhhCCCCcEEEEcCCCcchh---hhhhhccCcCceeecccc-cccCCC------CeE
Q 010109 228 DMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAHVM------PLL 295 (518)
Q Consensus 228 DlVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~l~i~---~la~~~~~~~r~ig~hf~-~P~~~~------~lv 295 (518)
|+||.|||.+.++...+|. .+.+.+++++++++ .||++++ ++++.+. -.|.+|+ .|+... ..+
T Consensus 59 DvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~ID-mSTisp~~a~~~a~~~~----~~G~~~lDAPVsGg~~~A~~GtL 133 (286)
T COG2084 59 DVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVID-MSTISPETARELAAALA----AKGLEFLDAPVSGGVPGAAAGTL 133 (286)
T ss_pred CEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEE-CCCCCHHHHHHHHHHHH----hcCCcEEecCccCCchhhhhCce
Confidence 9999999999988777774 58888899999875 4566655 4444442 2467777 366543 344
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCcEEEeCCc-ccc---hhhhhHHHH----HHHHHHHHH-cCCCHHHHHHHHH
Q 010109 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT 362 (518)
Q Consensus 296 eiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~Gf---i~nril~~~----~~Ea~~l~~-~G~~~~~ID~a~~ 362 (518)
.|+.| .+++.+++++++++.+|+.++++++. .|. ++|+++... +.||+.+.+ .|++++.+..++.
T Consensus 134 timvG--G~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~ 207 (286)
T COG2084 134 TIMVG--GDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVIS 207 (286)
T ss_pred EEEeC--CCHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 55555 38999999999999999999999964 343 678777643 689999886 6999999999998
No 29
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.74 E-value=3.8e-17 Score=163.84 Aligned_cols=187 Identities=17% Similarity=0.288 Sum_probs=138.1
Q ss_pred EEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCC
Q 010109 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (518)
Q Consensus 149 kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 228 (518)
||+|||+|.||.+||..|+++|++|++||++++.++... +.|.. ..++..+.+++||
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~~------------~~~~~~~~~~~aD 57 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELL-----------AAGAV------------TAETARQVTEQAD 57 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCCc------------ccCCHHHHHhcCC
Confidence 599999999999999999999999999999998876532 23321 1122235678999
Q ss_pred EEEEecccChHhHHHHHH--HHhhhCCCCcEEEEcCCCcchh---hhhhhccCcCceeeccccc-ccC------CCCeEE
Q 010109 229 MVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAH------VMPLLE 296 (518)
Q Consensus 229 lVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~l~i~---~la~~~~~~~r~ig~hf~~-P~~------~~~lve 296 (518)
+||+|+|++..++..++. .+...+++++++++ +|+.++. ++.+.+.. .|+||+. |+. ....+.
T Consensus 58 ivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd-~st~~~~~~~~l~~~l~~----~g~~~~~~pv~g~~~~a~~g~l~ 132 (291)
T TIGR01505 58 VIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVD-MSSISPIESKRFAKAVKE----KGIDYLDAPVSGGEIGAIEGTLS 132 (291)
T ss_pred EEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHH----cCCCEEecCCCCCHHHHhcCCEE
Confidence 999999998887766654 36667788888874 5555553 45555532 2566654 322 123345
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCcEEEeCC-ccc---chhhhhHHHH----HHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 010109 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTG---FAVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT-KFG 365 (518)
Q Consensus 297 iv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G---fi~nril~~~----~~Ea~~l~~-~G~~~~~ID~a~~-~~G 365 (518)
++.+ +++++++.+.++++.+|+.++++++ .+| +++|+++... ++|++.+.+ .|++++++..++. +.+
T Consensus 133 i~~g--g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~ 209 (291)
T TIGR01505 133 IMVG--GDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA 209 (291)
T ss_pred EEec--CCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence 5555 3689999999999999999999975 556 4788888765 799998886 6899999999998 544
No 30
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.71 E-value=3.6e-16 Score=157.14 Aligned_cols=188 Identities=17% Similarity=0.270 Sum_probs=138.0
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (518)
++||+|||+|.||..+|..+++.|++|++||++++.++... +.|. ..++++ +.++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-----------~~g~-------------~~~~~~~e~~~ 57 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVI-----------AAGA-------------ETASTAKAVAE 57 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCC-------------eecCCHHHHHh
Confidence 36899999999999999999999999999999998776532 1221 123344 3468
Q ss_pred CCCEEEEecccChHhHHHHHH--HHhhhCCCCcEEEEcCCCcchh---hhhhhccCcCceeeccccc-ccCC------CC
Q 010109 226 DVDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAHV------MP 293 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~l~i~---~la~~~~~~~r~ig~hf~~-P~~~------~~ 293 (518)
+||+||+|+|++..++..++. .+.+.++++++++ ++|+.++. ++++.+.. .|.||+. |+.. ..
T Consensus 58 ~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iii-d~st~~~~~~~~l~~~~~~----~g~~~~d~pv~g~~~~a~~g 132 (296)
T PRK11559 58 QCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVI-DMSSIAPLASREIAAALKA----KGIEMLDAPVSGGEPKAIDG 132 (296)
T ss_pred cCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEE-ECCCCCHHHHHHHHHHHHH----cCCcEEEcCCCCCHHHHhhC
Confidence 999999999998877666553 4677788899887 45555554 45555432 2667765 3322 13
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCcEEEeCC-cccch---hhhhHHH----HHHHHHHHHH-cCCCHHHHHHHHH-h
Q 010109 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFA---VNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT-K 363 (518)
Q Consensus 294 lveiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~Gfi---~nril~~----~~~Ea~~l~~-~G~~~~~ID~a~~-~ 363 (518)
.++++.+ ++++.++.+.++++.+|+.++++++ .+|++ +|+++.. .++|++.+.+ .|+++++++.++. +
T Consensus 133 ~l~i~~g--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~ 210 (296)
T PRK11559 133 TLSVMVG--GDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGG 210 (296)
T ss_pred cEEEEEC--CCHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 3556555 3688999999999999999999975 56664 6776654 4799999886 6889999999987 4
Q ss_pred cC
Q 010109 364 FG 365 (518)
Q Consensus 364 ~G 365 (518)
++
T Consensus 211 ~~ 212 (296)
T PRK11559 211 LA 212 (296)
T ss_pred cc
Confidence 44
No 31
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.69 E-value=3.9e-16 Score=155.43 Aligned_cols=155 Identities=19% Similarity=0.223 Sum_probs=120.9
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (518)
+||+|||+|.||++||..|.++|++|++||++++.++.+. +.|.++ ..+++.+.+++|
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~~~a 58 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAI-----------ERGLVD-----------EASTDLSLLKDC 58 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HCCCcc-----------cccCCHhHhcCC
Confidence 4899999999999999999999999999999998877643 233321 123345567899
Q ss_pred CEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccC------------CCCeE
Q 010109 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH------------VMPLL 295 (518)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~------------~~~lv 295 (518)
|+||+|+|++.. .++++++.+.++++++++ +++++....+......+.+|++.||+.+.. ..+.+
T Consensus 59 DlVilavp~~~~--~~~~~~l~~~l~~~~ii~-d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~ 135 (279)
T PRK07417 59 DLVILALPIGLL--LPPSEQLIPALPPEAIVT-DVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPW 135 (279)
T ss_pred CEEEEcCCHHHH--HHHHHHHHHhCCCCcEEE-eCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcE
Confidence 999999997653 467889988888898875 455666665555544556799999986432 23556
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCcEEEeCC
Q 010109 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (518)
Q Consensus 296 eiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (518)
.+++++.++++.++.+.++++.+|..+++++.
T Consensus 136 ~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~ 167 (279)
T PRK07417 136 VLTPTENTDLNALAIVEELAVSLGSKIYTADP 167 (279)
T ss_pred EEccCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 68889999999999999999999999998873
No 32
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.64 E-value=5.2e-15 Score=152.87 Aligned_cols=171 Identities=21% Similarity=0.227 Sum_probs=124.1
Q ss_pred cceEEEEEe-CCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 010109 146 RVKKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (518)
Q Consensus 146 ~~~kV~VIG-aG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (518)
.+++|+||| +|.||+++|..|..+|++|++||+++.. . . .+.+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~--~-------------------~---------------~~~~ 140 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD--R-------------------A---------------EDIL 140 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch--h-------------------H---------------HHHH
Confidence 467999999 9999999999999999999999986310 0 0 1235
Q ss_pred cCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCc--chhhhhhhccCcCceeecccccccCCCCeEE--EEeC
Q 010109 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAHVMPLLE--IVRT 300 (518)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l--~i~~la~~~~~~~r~ig~hf~~P~~~~~lve--iv~g 300 (518)
++||+||+|+|++. ..+++.++.+ +++++||++++|+. ++..+.... +.+|+|.||+.++....+.. ++..
T Consensus 141 ~~aDlVilavP~~~--~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~--~~~fvg~HPm~G~~~~~~~~~~vv~~ 215 (374)
T PRK11199 141 ADAGMVIVSVPIHL--TEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAH--SGPVLGLHPMFGPDVGSLAKQVVVVC 215 (374)
T ss_pred hcCCEEEEeCcHHH--HHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhC--CCCEEeeCCCCCCCCcccCCCEEEEc
Confidence 68999999999885 4688899988 89999999998863 456666554 34699999998765543322 4445
Q ss_pred CCCcHHHHHHHHHHHHhcCCcEEEeC-CcccchhhhhHH-HH---HHHHHHHHHcCCCHHHH
Q 010109 301 NQTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFF-PY---TQAAFLLVERGTDLYLI 357 (518)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~v~v~-d~~Gfi~nril~-~~---~~Ea~~l~~~G~~~~~I 357 (518)
+.++++.++.+.++++.+|..++.++ +.++.++..+.. +. +.++..+.+.+.+++++
T Consensus 216 ~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~ 277 (374)
T PRK11199 216 DGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQL 277 (374)
T ss_pred CCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 56788899999999999999999987 344544332221 22 34445555556665553
No 33
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.63 E-value=1.8e-14 Score=138.41 Aligned_cols=188 Identities=20% Similarity=0.234 Sum_probs=136.3
Q ss_pred cceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 010109 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (518)
Q Consensus 146 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (518)
..++||+||.|.||++|+.+|.++||.|++|||+.++++... +.|.-. ..+..|..+
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~-----------~~Ga~v------------~~sPaeVae 90 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQ-----------EAGARV------------ANSPAEVAE 90 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHH-----------Hhchhh------------hCCHHHHHh
Confidence 468999999999999999999999999999999999887643 344321 233456789
Q ss_pred CCCEEEEecccChHhHHHHHHH--HhhhCCCCcEEEEcCCCcchh---hhhhhccCcCceeecccc-cccCC------CC
Q 010109 226 DVDMVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAHV------MP 293 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~--l~~~~~~~~il~sntS~l~i~---~la~~~~~~~r~ig~hf~-~P~~~------~~ 293 (518)
+||+||.+||...+++..++.. +.+.++++......+||++++ +|++.+.+ .+..|. .|++. ..
T Consensus 91 ~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~----~~~~~vDAPVSGg~~~A~~G 166 (327)
T KOG0409|consen 91 DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISN----KGGRFVDAPVSGGVKGAEEG 166 (327)
T ss_pred hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHh----CCCeEEeccccCCchhhhcC
Confidence 9999999999999988887764 333334443332234555543 67666532 233343 36553 23
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCcEEEeCCc-ccc---hhhhhHHHH----HHHHHHHHH-cCCCHHHHHHHHH
Q 010109 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT 362 (518)
Q Consensus 294 lveiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~Gf---i~nril~~~----~~Ea~~l~~-~G~~~~~ID~a~~ 362 (518)
.+.|+.+ ++++.++.+..+++.+||+.+.++.+ .|. +.|+++... +.|++.+.+ .|+++..+-.++.
T Consensus 167 ~Ltimag--Gde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln 242 (327)
T KOG0409|consen 167 TLTIMAG--GDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILN 242 (327)
T ss_pred eEEEEec--CcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 4556666 58999999999999999999999853 343 677777643 689988875 6999998888887
No 34
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.62 E-value=4e-14 Score=140.08 Aligned_cols=186 Identities=18% Similarity=0.132 Sum_probs=135.6
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC----cEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-
Q 010109 148 KKVAILGGGLMGSGIATALILSNY----PVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY- 221 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (518)
+||+|||+|.||.+|+..|+++|+ +|+++ |+++++.+... +.|. ..+.+.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~-----------~~g~-------------~~~~~~~ 56 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQ-----------SLGV-------------KTAASNT 56 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHH-----------HcCC-------------EEeCChH
Confidence 589999999999999999999998 89999 99988765422 1221 122333
Q ss_pred ccccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEE-EEeC
Q 010109 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRT 300 (518)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lve-iv~g 300 (518)
+.+++||+||.|++ ++...+++.++.+.++++++++|.+++++++.+....+.. ++++.+|+.|......+. ++.+
T Consensus 57 e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~ 133 (266)
T PLN02688 57 EVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLG 133 (266)
T ss_pred HHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeC
Confidence 45789999999995 3456788888888888889888999999999988776543 788888888876655444 4567
Q ss_pred CCCcHHHHHHHHHHHHhcCCcEEEeCCc-----ccchh--hhhHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 010109 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNC-----TGFAV--NRMFFPYTQAAFL--LVERGTDLYLIDRAIT 362 (518)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~v~v~d~-----~Gfi~--nril~~~~~Ea~~--l~~~G~~~~~ID~a~~ 362 (518)
..++++..+.++++++.+|. ++++++. -|... ..++ .++.+++. ....|+++++.-.++.
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~g~a~~-~~~~~a~~ea~~~~Gl~~~~a~~~~~ 202 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGSGPAYI-FLAIEALADGGVAAGLPRDVALSLAA 202 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcCHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 77899999999999999999 7776531 01111 1112 22233321 4457999999888876
No 35
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.57 E-value=1.8e-13 Score=135.36 Aligned_cols=189 Identities=16% Similarity=0.169 Sum_probs=139.7
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 010109 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (518)
+||+|||+|+||.+|+..|.++|+ +|+++|+++++++.+.+. .| +..+.+. +
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~e 59 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK----------YG-------------ITITTNNNE 59 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh----------cC-------------cEEeCCcHH
Confidence 489999999999999999999885 699999999887653210 12 1122333 4
Q ss_pred cccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEE-eCC
Q 010109 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV-RTN 301 (518)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv-~g~ 301 (518)
.+.+||+||.|++. ..-.++++++.+.++++++++|..++++++.|.+.++.+.+++..+|+.|+.....+..+ .++
T Consensus 60 ~~~~aDiIiLavkP--~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~ 137 (272)
T PRK12491 60 VANSADILILSIKP--DLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNE 137 (272)
T ss_pred HHhhCCEEEEEeCh--HHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCC
Confidence 46899999999984 456788899988888899999999999999999988666689999999998887766654 677
Q ss_pred CCcHHHHHHHHHHHHhcCCcEEEeCCc--ccc-hhhh---hHHHHHHHHH--HHHHcCCCHHHHHHHHH
Q 010109 302 QTSPQVIVDLLDIGKKIKKTPIVVGNC--TGF-AVNR---MFFPYTQAAF--LLVERGTDLYLIDRAIT 362 (518)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~v~v~d~--~Gf-i~nr---il~~~~~Ea~--~l~~~G~~~~~ID~a~~ 362 (518)
..+++..+.+..+|..+|.. +++.+. ..+ ...- -+..++.|++ ..++.|++.++-.....
T Consensus 138 ~~~~~~~~~v~~lf~~~G~~-~~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~ 205 (272)
T PRK12491 138 MVTEKDIKEVLNIFNIFGQT-EVVNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAA 205 (272)
T ss_pred CCCHHHHHHHHHHHHcCCCE-EEEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 78888999999999999997 455431 000 0000 1122344444 33567888887777654
No 36
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.56 E-value=1.3e-13 Score=138.32 Aligned_cols=187 Identities=17% Similarity=0.187 Sum_probs=128.0
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-cccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~~ 226 (518)
+||+|||+|.||.+||..|+++|++|++||+++++++... +.|. ..+.+ .+.+++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~-----------~~g~-------------~~~~s~~~~~~~ 57 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALV-----------DKGA-------------TPAASPAQAAAG 57 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcCC-------------cccCCHHHHHhc
Confidence 5899999999999999999999999999999998876532 1221 12223 345789
Q ss_pred CCEEEEecccChHhHHHHHH--HHhhhCCCCcEEEEcCCCcchh---hhhhhcc-CcCceeeccccc-c--cCCCCeEEE
Q 010109 227 VDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTY-SKDRIVGAHFFS-P--AHVMPLLEI 297 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~l~i~---~la~~~~-~~~r~ig~hf~~-P--~~~~~lvei 297 (518)
||+||.|+|++..++..++. .+.+.++++++++ ++||.++. ++++.+. +..+|+...... | .....++.+
T Consensus 58 aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvi-d~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~ 136 (296)
T PRK15461 58 AEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVI-DMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLL 136 (296)
T ss_pred CCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEE
Confidence 99999999998766655442 3566677888775 56666664 4444442 222333321111 1 112334444
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCcEEEeCCc-ccc---hhhhhHH----HHHHHHHHHHH-cCCCHHHHHHHHH
Q 010109 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT 362 (518)
Q Consensus 298 v~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~Gf---i~nril~----~~~~Ea~~l~~-~G~~~~~ID~a~~ 362 (518)
+.| ++++++.++++++.+|+.++++++. .|. ++|.++. ..+.|++.+.+ .|++++.+-.++.
T Consensus 137 ~gg---~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~ 207 (296)
T PRK15461 137 AGG---TAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMS 207 (296)
T ss_pred ECC---CHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 444 7889999999999999999999862 232 4555443 34689988875 6999999877776
No 37
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.55 E-value=3.3e-13 Score=133.65 Aligned_cols=188 Identities=18% Similarity=0.175 Sum_probs=133.9
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 010109 147 VKKVAILGGGLMGSGIATALILSN---YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (518)
+++|+|||+|.||..|+..+.++| ++|.++|++++..+...+. .| +..+.+. +
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~----------~g-------------~~~~~~~~~ 58 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEE----------YG-------------VRAATDNQE 58 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHh----------cC-------------CeecCChHH
Confidence 468999999999999999999999 7899999999876653221 01 1122333 3
Q ss_pred cccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEE-EEeCC
Q 010109 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRTN 301 (518)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lve-iv~g~ 301 (518)
.+.+||+||.|+|.. .-.++++++.+.+ +++|+|.+++++.+.+...+++..+++.+||+.|......+. ++++.
T Consensus 59 ~~~~advVil~v~~~--~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~ 134 (267)
T PRK11880 59 AAQEADVVVLAVKPQ--VMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA 134 (267)
T ss_pred HHhcCCEEEEEcCHH--HHHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence 467899999999754 3467788887766 467888899999999888776667899999998876655454 56777
Q ss_pred CCcHHHHHHHHHHHHhcCCcEEEeCCc-c-cch-hh----hhHHHHHHHHH-HH-HHcCCCHHHHHHHHH
Q 010109 302 QTSPQVIVDLLDIGKKIKKTPIVVGNC-T-GFA-VN----RMFFPYTQAAF-LL-VERGTDLYLIDRAIT 362 (518)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~v~v~d~-~-Gfi-~n----ril~~~~~Ea~-~l-~~~G~~~~~ID~a~~ 362 (518)
.++++..+.+..+++.+|..+++..+. . ... .. -.++ ++.|++ .. ...|+++++...++.
T Consensus 135 ~~~~~~~~~v~~l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~-~~~~~~~~~~~~~Gl~~~~a~~~~~ 203 (267)
T PRK11880 135 LVSAEDRELVENLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVF-LFIEALADAGVKLGLPREQARKLAA 203 (267)
T ss_pred CCCHHHHHHHHHHHHhCCeEEEECChHhcchHHHHhcChHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 889999999999999999754443221 1 111 11 1222 233443 33 457899888777665
No 38
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.55 E-value=4.2e-14 Score=129.35 Aligned_cols=146 Identities=20% Similarity=0.235 Sum_probs=101.4
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (518)
|+||||||.|.||++||.+|+++||+|++||++++++++.. +.| .....+. +.++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~-----------~~g-------------~~~~~s~~e~~~ 56 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALA-----------EAG-------------AEVADSPAEAAE 56 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHH-----------HTT-------------EEEESSHHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhH-----------Hhh-------------hhhhhhhhhHhh
Confidence 57999999999999999999999999999999999887643 222 2234444 4578
Q ss_pred CCCEEEEecccChHhHHHHHHH--HhhhCCCCcEEEEcCCCcchh---hhhhhccCcCceeeccccc-cc-------CCC
Q 010109 226 DVDMVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PA-------HVM 292 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~--l~~~~~~~~il~sntS~l~i~---~la~~~~~~~r~ig~hf~~-P~-------~~~ 292 (518)
+||+||.|+|.+.++ ++++.. +.+.+.++.+++ ++||.+++ ++++.+.. .|.||.. |+ ...
T Consensus 57 ~~dvvi~~v~~~~~v-~~v~~~~~i~~~l~~g~iii-d~sT~~p~~~~~~~~~~~~----~g~~~vdapV~Gg~~~a~~g 130 (163)
T PF03446_consen 57 QADVVILCVPDDDAV-EAVLFGENILAGLRPGKIII-DMSTISPETSRELAERLAA----KGVRYVDAPVSGGPPGAEEG 130 (163)
T ss_dssp HBSEEEE-SSSHHHH-HHHHHCTTHGGGS-TTEEEE-E-SS--HHHHHHHHHHHHH----TTEEEEEEEEESHHHHHHHT
T ss_pred cccceEeecccchhh-hhhhhhhHHhhccccceEEE-ecCCcchhhhhhhhhhhhh----ccceeeeeeeeccccccccc
Confidence 899999999987765 466666 888888998886 45666665 44444321 2455542 33 235
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCcEEEe
Q 010109 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV 325 (518)
Q Consensus 293 ~lveiv~g~~t~~e~~~~~~~l~~~lGk~~v~v 325 (518)
.+.-++.| +++.++.++++++.+|...+++
T Consensus 131 ~l~~~~gG---~~~~~~~~~~~l~~~~~~v~~~ 160 (163)
T PF03446_consen 131 TLTIMVGG---DEEAFERVRPLLEAMGKNVYHY 160 (163)
T ss_dssp TEEEEEES----HHHHHHHHHHHHHHEEEEEEE
T ss_pred ceEEEccC---CHHHHHHHHHHHHHHhCCceee
Confidence 66767776 6889999999999999988743
No 39
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.54 E-value=2.7e-13 Score=135.04 Aligned_cols=189 Identities=15% Similarity=0.170 Sum_probs=134.0
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCC----CcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 010109 147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G----~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (518)
.+||+|||+|.||.+|+..|+++| ++|+++|++++ .++.... ..| +..+.+.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~----------~~g-------------~~~~~~~ 59 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQ----------KYG-------------VKGTHNK 59 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHH----------hcC-------------ceEeCCH
Confidence 469999999999999999999998 78999999764 4443211 012 1122333
Q ss_pred -ccccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCC-eEEEEe
Q 010109 222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP-LLEIVR 299 (518)
Q Consensus 222 -~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~-lveiv~ 299 (518)
+.+.+||+||.||+.+. -.+++.++.+.+.++++|+|..++++++.+.+.+++..++++.||+.|..... +.-+++
T Consensus 60 ~e~~~~aDvVilav~p~~--~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~ 137 (279)
T PRK07679 60 KELLTDANILFLAMKPKD--VAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISP 137 (279)
T ss_pred HHHHhcCCEEEEEeCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEee
Confidence 44689999999998653 35667888887888899999889999998888776556799999987765533 444557
Q ss_pred CCCCcHHHHHHHHHHHHhcCCcEEEeCCc--c---cchh--hhhHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 010109 300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNC--T---GFAV--NRMFFPYTQAAFL--LVERGTDLYLIDRAIT 362 (518)
Q Consensus 300 g~~t~~e~~~~~~~l~~~lGk~~v~v~d~--~---Gfi~--nril~~~~~Ea~~--l~~~G~~~~~ID~a~~ 362 (518)
++..+++..+.+.+++..+|... ++.+. . |... ... ..++.|++. ....|+++++.-.++.
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~~-~v~e~~~~~~~a~~Gsgpa~-~~~~~eal~e~~~~~Gl~~~~a~~~~~ 207 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLVS-VVEEEDMHAVTALSGSGPAY-IYYVVEAMEKAAKKIGLKEDVAKSLIL 207 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEE-EeCHHHhhhHHHhhcCHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 77788999999999999999844 44321 1 1100 111 223444433 3567999988888776
No 40
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.53 E-value=1.6e-14 Score=160.80 Aligned_cols=105 Identities=21% Similarity=0.253 Sum_probs=94.3
Q ss_pred HHHHHHHhcCCcEEEeCCcccchhhhhHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---cHHHHhhhcCchhHH
Q 010109 310 DLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAI 383 (518)
Q Consensus 310 ~~~~l~~~lGk~~v~v~d~~Gfi~nril~~~~~Ea~~l~~~G~--~~~~ID~a~~-~~G~p~---GPf~~~D~~Gld~~~ 383 (518)
.+.+++..+|+.|+.+.+.+|||+||++.+++|||++++++|+ +|+|||.+++ |+|||+ |||+++|.+|+|.++
T Consensus 626 ~v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v~ 705 (737)
T TIGR02441 626 DADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLV 705 (737)
T ss_pred HHHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHH
Confidence 3455666778877766678999999999999999999999997 9999999999 999996 999999999999999
Q ss_pred HhhhhhhhhCCCCCccccHHHHHHHC-CCCCccCCccce
Q 010109 384 ATGMQFIENFPERTYKSMIIPIMQED-KRAGETTRKGFY 421 (518)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~l~~lv~~-G~~G~k~g~GfY 421 (518)
++++.++..+++++.|++++.+|+++ | +.||
T Consensus 706 ~~~~~l~~~~g~~~~p~~lL~~~~~~~g-------~~f~ 737 (737)
T TIGR02441 706 DKMEKYAAAYGVQFTPCQLLLDHAKSPG-------KKFY 737 (737)
T ss_pred HHHHHHHHHhCCCcCCCHHHHHHHHhcC-------CCCC
Confidence 99999999999888899999999986 5 6676
No 41
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.53 E-value=1.5e-13 Score=141.68 Aligned_cols=176 Identities=18% Similarity=0.194 Sum_probs=124.9
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (518)
++|+|||+|.||++||..|.++|++|.+|+++++..+... ....|..+ ..++++ +.+++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~---------a~~~~~~~-----------~~~~~~~~~~~~ 60 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLAR---------ALGFGVID-----------ELAADLQRAAAE 60 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHH---------HhcCCCCc-----------ccccCHHHHhcC
Confidence 4799999999999999999999999999999877544321 01122211 112333 34789
Q ss_pred CCEEEEecccChHhHHHHHHHHhh-hCCCCcEEEEcCCCc--chhhhhhhccCcCceeecccccccC------------C
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH------------V 291 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~-~~~~~~il~sntS~l--~i~~la~~~~~~~r~ig~hf~~P~~------------~ 291 (518)
||+||+|+|.+ ...+++.++.+ .++++++|++.+|+. .+..+...+.+..+|+|.||+...+ .
T Consensus 61 aDlVilavP~~--~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~ 138 (359)
T PRK06545 61 ADLIVLAVPVD--ATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFE 138 (359)
T ss_pred CCEEEEeCCHH--HHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHC
Confidence 99999999985 46788999987 478888887666653 2344444445677899999975321 1
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHHhcCCcEEEeC-CcccchhhhhHH--HHHHHHH
Q 010109 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFF--PYTQAAF 345 (518)
Q Consensus 292 ~~lveiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~-d~~Gfi~nril~--~~~~Ea~ 345 (518)
.....+++++.++++.++.+.++++.+|..++++. +.+..++..+.+ .++.+++
T Consensus 139 g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al 195 (359)
T PRK06545 139 NAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSL 195 (359)
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHH
Confidence 33456788888999999999999999999999886 445555554433 3445444
No 42
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.52 E-value=4.6e-13 Score=133.93 Aligned_cols=186 Identities=15% Similarity=0.176 Sum_probs=126.2
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (518)
+||+|||+|.||.+||..|+++|++|++||+++. .+.. .+.|.. ...+..+.+++|
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g~~------------~~~s~~~~~~~a 56 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLGAV------------SVETARQVTEAS 56 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcCCe------------ecCCHHHHHhcC
Confidence 3799999999999999999999999999999874 2321 122321 112223456899
Q ss_pred CEEEEecccChHhHHHHHHH--HhhhCCCCcEEEEcCCCcchh---hhhhhc-cCcCceeecccccc----cCCCCeEEE
Q 010109 228 DMVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTIDLN---LIGERT-YSKDRIVGAHFFSP----AHVMPLLEI 297 (518)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~--l~~~~~~~~il~sntS~l~i~---~la~~~-~~~~r~ig~hf~~P----~~~~~lvei 297 (518)
|+||.|||.+..++..++.. +...+.++.+++. +||.++. ++++.+ .+..+|+. +|+.. +....+.-+
T Consensus 57 dvVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd-~sT~~p~~~~~~~~~~~~~G~~~vd-aPVsGg~~~a~~g~l~~~ 134 (292)
T PRK15059 57 DIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVD-MSSISPIETKRFARQVNELGGDYLD-APVSGGEIGAREGTLSIM 134 (292)
T ss_pred CEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCCEEE-ecCCCCHHHHhcCcEEEE
Confidence 99999999887776655442 5555677887754 5666665 444444 23334544 23321 122344444
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCcEEEeCCc-ccc---hhhhhHHH----HHHHHHHHHH-cCCCHHHHHHHHH
Q 010109 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT 362 (518)
Q Consensus 298 v~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~Gf---i~nril~~----~~~Ea~~l~~-~G~~~~~ID~a~~ 362 (518)
+.| +++.++.++++++.+|+.++++++. .|. ++|+++.. .+.|++.+.+ .|++++.+-.++.
T Consensus 135 ~gG---~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~ 205 (292)
T PRK15059 135 VGG---DEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALM 205 (292)
T ss_pred EcC---CHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 444 7889999999999999999999863 332 45555543 3689988875 6999999777776
No 43
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.51 E-value=4.2e-13 Score=134.28 Aligned_cols=181 Identities=20% Similarity=0.241 Sum_probs=129.2
Q ss_pred EEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccCCCEE
Q 010109 152 ILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMV 230 (518)
Q Consensus 152 VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlV 230 (518)
|||+|.||.+||..|+++|++|++||+++++++... +.|. ..+.+. +.+++||+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g~-------------~~~~s~~~~~~~advV 56 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAV-----------AAGA-------------QAAASPAEAAEGADRV 56 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHH-----------HcCC-------------eecCCHHHHHhcCCEE
Confidence 689999999999999999999999999998876532 2221 122333 457899999
Q ss_pred EEecccChHhHHHHH---HHHhhhCCCCcEEEEcCCCcchhh---hhhhccCcCceeeccccc-ccCC-------CCeEE
Q 010109 231 IEAIIENVSLKQQIF---ADLEKYCPPHCILASNTSTIDLNL---IGERTYSKDRIVGAHFFS-PAHV-------MPLLE 296 (518)
Q Consensus 231 Ieav~e~~~~k~~v~---~~l~~~~~~~~il~sntS~l~i~~---la~~~~~~~r~ig~hf~~-P~~~-------~~lve 296 (518)
|.|||.+..++ .++ ..+.+.+++++++++ +||++++. +++.+.. .|.+|.. |+.. ..+..
T Consensus 57 il~vp~~~~~~-~v~~g~~~l~~~~~~g~~vid-~st~~p~~~~~~~~~~~~----~g~~~vdaPv~Gg~~~a~~g~l~~ 130 (288)
T TIGR01692 57 ITMLPAGQHVI-SVYSGDEGILPKVAKGSLLID-CSTIDPDSARKLAELAAA----HGAVFMDAPVSGGVGGARAGTLTF 130 (288)
T ss_pred EEeCCChHHHH-HHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHH----cCCcEEECCCCCCHHHHhhCcEEE
Confidence 99999866554 444 567777888887764 55776653 3333321 2455543 4432 34444
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCcEEEeCC-cccc---hhhhhHHH----HHHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 010109 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT-KFG 365 (518)
Q Consensus 297 iv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~Gf---i~nril~~----~~~Ea~~l~~-~G~~~~~ID~a~~-~~G 365 (518)
++.| +++.++.+.+++..+|+.++++++ ..|. ++|+++.. .++|++.+.+ .|++++++..++. +.|
T Consensus 131 ~~gg---~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~ 206 (288)
T TIGR01692 131 MVGG---VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG 206 (288)
T ss_pred EECC---CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence 5554 678899999999999999999986 4454 55665543 3789998875 6999999999988 544
No 44
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.49 E-value=1e-12 Score=138.49 Aligned_cols=161 Identities=19% Similarity=0.177 Sum_probs=121.7
Q ss_pred eEEEEEe-CCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 010109 148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (518)
Q Consensus 148 ~kV~VIG-aG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (518)
+||+||| +|.||+++|..|..+|++|+++|++++.+..... +.| +..+++. +.+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~----------~~g-------------v~~~~~~~e~~~ 57 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAK----------ELG-------------VEYANDNIDAAK 57 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHH----------HcC-------------CeeccCHHHHhc
Confidence 4899998 7999999999999999999999999876533211 112 1123333 4578
Q ss_pred CCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC--cchhhhhhhccCcCceeeccccc----ccCCCCeEEEEe
Q 010109 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFS----PAHVMPLLEIVR 299 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~la~~~~~~~r~ig~hf~~----P~~~~~lveiv~ 299 (518)
+||+||.|+|.+. ...++.++.+.+++++++++.+|+ .+...+.+.++...+|++.||+. |......+.+++
T Consensus 58 ~aDvVIlavp~~~--~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p 135 (437)
T PRK08655 58 DADIVIISVPINV--TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTP 135 (437)
T ss_pred cCCEEEEecCHHH--HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEec
Confidence 9999999999753 358889999999999999888874 34456666655556899999874 233456777888
Q ss_pred CCCCcHHHHHHHHHHHHhcCCcEEEeC-Ccccchh
Q 010109 300 TNQTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAV 333 (518)
Q Consensus 300 g~~t~~e~~~~~~~l~~~lGk~~v~v~-d~~Gfi~ 333 (518)
++.++++.++.+.+++..+|..++.+. +.+..+.
T Consensus 136 ~~~~~~~~~~~v~~ll~~~G~~v~~~~~e~HD~~~ 170 (437)
T PRK08655 136 TEKRSNPWFDKVKNFLEKEGARVIVTSPEEHDRIM 170 (437)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHH
Confidence 888889999999999999999998876 3344433
No 45
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.49 E-value=1.5e-12 Score=129.54 Aligned_cols=153 Identities=18% Similarity=0.221 Sum_probs=111.0
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 010109 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (518)
+||+|||+|.||+++|..|.++|+ +|++||++++.++.+. +.|..+ ...+.+++.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~-----------~~g~~~------------~~~~~~~~~ 57 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL-----------ELGLVD------------EIVSFEELK 57 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH-----------HCCCCc------------ccCCHHHHh
Confidence 389999999999999999999996 7899999998776532 233221 122334455
Q ss_pred CCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcc-hhhhhhhccCcCceeeccccc------ccC------CC
Q 010109 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-LNLIGERTYSKDRIVGAHFFS------PAH------VM 292 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~-i~~la~~~~~~~r~ig~hf~~------P~~------~~ 292 (518)
+||+||.|+|.+. ..+++.++.+ ++++++|++.+|+.. +.+..... .+.+|++.||+. |.. ..
T Consensus 58 ~aD~Vilavp~~~--~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~-~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g 133 (275)
T PRK08507 58 KCDVIFLAIPVDA--IIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH-IRKNFIAAHPMAGTENSGPKAAIKGLYEG 133 (275)
T ss_pred cCCEEEEeCcHHH--HHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh-cCCCEEecCCcCcCchhhHHhccHHHhCC
Confidence 6999999999764 3567788888 888998887655431 22211111 235799999984 322 23
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCcEEEeCC
Q 010109 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (518)
Q Consensus 293 ~lveiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (518)
..+.+++.+.++++.++.+.++++.+|..++.++.
T Consensus 134 ~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~ 168 (275)
T PRK08507 134 KVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA 168 (275)
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence 46667788778899999999999999999999873
No 46
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.47 E-value=2.1e-12 Score=136.59 Aligned_cols=190 Identities=16% Similarity=0.230 Sum_probs=129.1
Q ss_pred cceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc--
Q 010109 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-- 223 (518)
Q Consensus 146 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 223 (518)
.+++|||||+|.||.+||.+|+++|++|++|||++++.+...+.. ...|.. .+....+.++
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~-------~~~Ga~----------~~~~a~s~~e~v 67 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGNL----------PLYGFKDPEDFV 67 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh-------hhcCCc----------ccccCCCHHHHH
Confidence 356899999999999999999999999999999999887643210 001210 1112233332
Q ss_pred --ccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchh---hhhhhccCcCceeeccccc-ccC-------
Q 010109 224 --FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAH------- 290 (518)
Q Consensus 224 --~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~---~la~~~~~~~r~ig~hf~~-P~~------- 290 (518)
++.+|+||.+||.+..+ ++++..+.+.+.++.|++.. |+.++. ++++.+.. .|.||+. |+.
T Consensus 68 ~~l~~~dvIi~~v~~~~aV-~~Vi~gl~~~l~~G~iiID~-sT~~~~~t~~~~~~l~~----~Gi~fldapVSGG~~gA~ 141 (493)
T PLN02350 68 LSIQKPRSVIILVKAGAPV-DQTIKALSEYMEPGDCIIDG-GNEWYENTERRIKEAAE----KGLLYLGMGVSGGEEGAR 141 (493)
T ss_pred hcCCCCCEEEEECCCcHHH-HHHHHHHHhhcCCCCEEEEC-CCCCHHHHHHHHHHHHH----cCCeEEeCCCcCCHHHhc
Confidence 44599999999988766 45667888888888888653 444332 34444321 2555552 443
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCc------EEEeCC-cccc---hh-hhhHHH---HHHHHHHHHHc--CCCH
Q 010109 291 VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKT------PIVVGN-CTGF---AV-NRMFFP---YTQAAFLLVER--GTDL 354 (518)
Q Consensus 291 ~~~lveiv~g~~t~~e~~~~~~~l~~~lGk~------~v~v~d-~~Gf---i~-nril~~---~~~Ea~~l~~~--G~~~ 354 (518)
.++ .+++| .++++++.++++++.++.. ..++++ ..|. ++ |-+.+. .+.|++.+.+. |+++
T Consensus 142 ~G~--~im~G--G~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~ 217 (493)
T PLN02350 142 NGP--SLMPG--GSFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSN 217 (493)
T ss_pred CCC--eEEec--CCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCH
Confidence 234 45555 3789999999999999953 778886 2333 33 444443 37899998864 8999
Q ss_pred HHHHHHHH
Q 010109 355 YLIDRAIT 362 (518)
Q Consensus 355 ~~ID~a~~ 362 (518)
+++-.++.
T Consensus 218 ~~l~~vf~ 225 (493)
T PLN02350 218 EELAEVFA 225 (493)
T ss_pred HHHHHHHH
Confidence 99998864
No 47
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.45 E-value=5.5e-12 Score=126.79 Aligned_cols=189 Identities=9% Similarity=0.063 Sum_probs=125.1
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (518)
+||+|||+|.||.+||..|+++|++|++||+++++++... +.|..... ...+. +.+.+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~-----------~~g~~~~~----------s~~~~~~~~~~ 59 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMK-----------EDRTTGVA----------NLRELSQRLSA 59 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HcCCcccC----------CHHHHHhhcCC
Confidence 4899999999999999999999999999999999877643 12211100 00111 23567
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcch--hhhhhhc-cCcCceeecccccccC--CCCeEEEEeCC
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERT-YSKDRIVGAHFFSPAH--VMPLLEIVRTN 301 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i--~~la~~~-~~~~r~ig~hf~~P~~--~~~lveiv~g~ 301 (518)
+|+||.|+|.+ . -++++.++.+.++++.++++.+++.+. .++...+ .+..+|+..+...++. ...+..++.|
T Consensus 60 ~dvIi~~vp~~-~-~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG- 136 (298)
T TIGR00872 60 PRVVWVMVPHG-I-VDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGG- 136 (298)
T ss_pred CCEEEEEcCch-H-HHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCC-
Confidence 99999999987 3 467788898889888888765444322 2333333 2233444443332111 1123333344
Q ss_pred CCcHHHHHHHHHHHHhcCC---cEEEeCCc-ccc----hhhhhHHH---HHHHHHHHHHc-C--CCHHHHHHHHH
Q 010109 302 QTSPQVIVDLLDIGKKIKK---TPIVVGNC-TGF----AVNRMFFP---YTQAAFLLVER-G--TDLYLIDRAIT 362 (518)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk---~~v~v~d~-~Gf----i~nril~~---~~~Ea~~l~~~-G--~~~~~ID~a~~ 362 (518)
+++.++.+.++++.++. ..+++++. .|. +.|-+... .+.|++.+++. | ++++++-.+|+
T Consensus 137 --~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~ 209 (298)
T TIGR00872 137 --DGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWR 209 (298)
T ss_pred --CHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHc
Confidence 78899999999999986 46788753 232 33444443 36899999875 4 59999999987
No 48
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.45 E-value=2.2e-12 Score=135.60 Aligned_cols=204 Identities=16% Similarity=0.170 Sum_probs=130.8
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCCCHHHHHhhhcccccccCcc-
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVR----ANLQSRVKKGKMTQEKFEKTISLLTGVLDYE- 222 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 222 (518)
+||+|||+|.||..+|..|+++||+|++||++++.++...+... ..++..+.+. ...++++.+++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~--------~~~g~l~~~~~~~~ 72 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKA--------LAAGRLRATTDYED 72 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHh--------hhcCCeEEECCHHH
Confidence 48999999999999999999999999999999998876432100 0001110000 0013455666665
Q ss_pred cccCCCEEEEecccChH--------hHHHHHHHHhhhCCCCcEEEEcCCCcchh---hhhh-hccC--cCc-eeecc-cc
Q 010109 223 SFKDVDMVIEAIIENVS--------LKQQIFADLEKYCPPHCILASNTSTIDLN---LIGE-RTYS--KDR-IVGAH-FF 286 (518)
Q Consensus 223 ~~~~aDlVIeav~e~~~--------~k~~v~~~l~~~~~~~~il~sntS~l~i~---~la~-~~~~--~~r-~ig~h-f~ 286 (518)
.+++||+||.|||.... ....+...+.+.++++++++. +||+++. ++.. .+.+ ..+ ....+ -+
T Consensus 73 ~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~ 151 (411)
T TIGR03026 73 AIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDFYLAY 151 (411)
T ss_pred HHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCceEEE
Confidence 48999999999997642 345666788888888887764 5666554 3332 2111 000 11111 12
Q ss_pred cccCCCC--e-------EEEEeCCCCcHHHHHHHHHHHHhcC-CcEEEeCCc-cc---chhhhhH----HHHHHHHHHHH
Q 010109 287 SPAHVMP--L-------LEIVRTNQTSPQVIVDLLDIGKKIK-KTPIVVGNC-TG---FAVNRMF----FPYTQAAFLLV 348 (518)
Q Consensus 287 ~P~~~~~--l-------veiv~g~~t~~e~~~~~~~l~~~lG-k~~v~v~d~-~G---fi~nril----~~~~~Ea~~l~ 348 (518)
+|....+ + -.++.| .+++..+.+.+++..++ +.++++++. .+ -++++++ .+++||++.+.
T Consensus 152 ~Pe~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la 229 (411)
T TIGR03026 152 NPEFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARIC 229 (411)
T ss_pred CCCcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3432221 1 135555 48899999999999998 577777752 12 1344444 35689999887
Q ss_pred H-cCCCHHHHHHHHH
Q 010109 349 E-RGTDLYLIDRAIT 362 (518)
Q Consensus 349 ~-~G~~~~~ID~a~~ 362 (518)
+ .|++++++-.++.
T Consensus 230 ~~~GiD~~~v~~~~~ 244 (411)
T TIGR03026 230 EALGIDVYEVIEAAG 244 (411)
T ss_pred HHhCCCHHHHHHHhC
Confidence 6 6999999988876
No 49
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.43 E-value=6.9e-12 Score=132.54 Aligned_cols=188 Identities=14% Similarity=0.157 Sum_probs=130.8
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc----
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES---- 223 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---- 223 (518)
.+|||||+|.||++||..|+++||+|++||+++++.+...+.. ...|. .+..+.++++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~-----------~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKA-------KEGNT-----------RVKGYHTLEELVNS 63 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhh-------hhcCC-----------cceecCCHHHHHhc
Confidence 5899999999999999999999999999999999987644210 00121 1223344433
Q ss_pred ccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchh--hhhhhccCcCceeeccccc-ccCC-------CC
Q 010109 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFFS-PAHV-------MP 293 (518)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~--~la~~~~~~~r~ig~hf~~-P~~~-------~~ 293 (518)
++++|+||.+|+....+ ++++.++.+.+.++.||++.+++...+ +....+. -.|.||+. |+.. ++
T Consensus 64 l~~~d~Iil~v~~~~~v-~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~----~~Gi~fldapVSGG~~gA~~G~ 138 (470)
T PTZ00142 64 LKKPRKVILLIKAGEAV-DETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCE----EKGILYLGMGVSGGEEGARYGP 138 (470)
T ss_pred CCCCCEEEEEeCChHHH-HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHH----HcCCeEEcCCCCCCHHHHhcCC
Confidence 34699999999877654 567788999999999887665554333 2333331 12566653 4432 34
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCc------EEEeCC-cccc----hhhhhHHH---HHHHHHHHHH--cCCCHHHH
Q 010109 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKT------PIVVGN-CTGF----AVNRMFFP---YTQAAFLLVE--RGTDLYLI 357 (518)
Q Consensus 294 lveiv~g~~t~~e~~~~~~~l~~~lGk~------~v~v~d-~~Gf----i~nril~~---~~~Ea~~l~~--~G~~~~~I 357 (518)
. ++.| .++++++.++++++.++.. ..++++ ..|. +.|-+.+. .+.|++.+++ .|++++++
T Consensus 139 -~-lm~G--G~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l 214 (470)
T PTZ00142 139 -S-LMPG--GNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEEL 214 (470)
T ss_pred -E-EEEe--CCHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHH
Confidence 3 5555 3789999999999999977 577775 3343 34555543 3689999985 68899999
Q ss_pred HHHHH
Q 010109 358 DRAIT 362 (518)
Q Consensus 358 D~a~~ 362 (518)
-.++.
T Consensus 215 ~~v~~ 219 (470)
T PTZ00142 215 SEVFN 219 (470)
T ss_pred HHHHH
Confidence 88886
No 50
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.43 E-value=3.3e-12 Score=129.08 Aligned_cols=157 Identities=15% Similarity=0.146 Sum_probs=114.3
Q ss_pred cceEEEEEeCCcchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 010109 146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (518)
Q Consensus 146 ~~~kV~VIGaG~MG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (518)
.+++|+|||+|.||.++|..|.++|+ +|++||++++.++.+. +.|... ....+. +
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-----------~~g~~~-----------~~~~~~~~ 62 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR-----------ELGLGD-----------RVTTSAAE 62 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-----------hCCCCc-----------eecCCHHH
Confidence 35799999999999999999999995 8999999998766532 123211 112223 4
Q ss_pred cccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCc--chhhhhhhccCcCceeecccccccCC---------
Q 010109 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAHV--------- 291 (518)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l--~i~~la~~~~~~~r~ig~hf~~P~~~--------- 291 (518)
.+++||+||.|+|.. ....++.++.+.++++++|++.+|.- .+..+........+|++.||+.+.+.
T Consensus 63 ~~~~aDvViiavp~~--~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~ 140 (307)
T PRK07502 63 AVKGADLVILCVPVG--ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAE 140 (307)
T ss_pred HhcCCCEEEECCCHH--HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHH
Confidence 578999999999875 34677888888888998886654432 12334444444458999999874321
Q ss_pred ---CCeEEEEeCCCCcHHHHHHHHHHHHhcCCcEEEeC
Q 010109 292 ---MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (518)
Q Consensus 292 ---~~lveiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (518)
...+.+++...++++.++.+.++++.+|..++++.
T Consensus 141 l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~ 178 (307)
T PRK07502 141 LFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMD 178 (307)
T ss_pred HHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 12345677777889999999999999999998886
No 51
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.43 E-value=6.4e-12 Score=123.83 Aligned_cols=165 Identities=17% Similarity=0.203 Sum_probs=121.3
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC--cc
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD--YE 222 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~ 222 (518)
.++|+|+|+|.||++||..+..+|+.|.+++++.. .++.+. +.|..+. .+.+ .+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~-----------~lgv~d~-----------~~~~~~~~ 60 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAAL-----------ELGVIDE-----------LTVAGLAE 60 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHh-----------hcCcccc-----------cccchhhh
Confidence 46899999999999999999999999877766554 333321 2333221 1122 35
Q ss_pred cccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcc--hhhhhhhccCcCceeecccccccC------CCCe
Q 010109 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAH------VMPL 294 (518)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~--i~~la~~~~~~~r~ig~hf~~P~~------~~~l 294 (518)
.+.++|+||.|||-. .-.++++++.+.++++++|+..+|+.. ++.+........+|+|.||+..++ ....
T Consensus 61 ~~~~aD~VivavPi~--~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~ 138 (279)
T COG0287 61 AAAEADLVIVAVPIE--ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAV 138 (279)
T ss_pred hcccCCEEEEeccHH--HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCE
Confidence 678899999999865 446889999999999999999999763 345544442212899999987552 2355
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCcEEEeC-Ccccchhhh
Q 010109 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNR 335 (518)
Q Consensus 295 veiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~-d~~Gfi~nr 335 (518)
+.+++++.++.+.+..+.++++.+|..++.+. +.+..+.-.
T Consensus 139 ~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~ 180 (279)
T COG0287 139 VVLTPSEGTEKEWVEEVKRLWEALGARLVEMDAEEHDRVMAA 180 (279)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcChHHHhHHHHH
Confidence 66788888899999999999999999888886 344444433
No 52
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.42 E-value=1.1e-11 Score=124.88 Aligned_cols=182 Identities=18% Similarity=0.175 Sum_probs=123.9
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-cc-
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK- 225 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~- 225 (518)
+||+|||+|.||.+||..|+++|++|++||+++++.+... +.|. ....+.++ ++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g~-------------~~~~~~~e~~~~ 56 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALA-----------EEGA-------------TGADSLEELVAK 56 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-----------HCCC-------------eecCCHHHHHhh
Confidence 4899999999999999999999999999999998876532 2231 11223322 22
Q ss_pred --CCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchh---hhhhhccCcCceeeccccc-ccCCC------C
Q 010109 226 --DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAHVM------P 293 (518)
Q Consensus 226 --~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~---~la~~~~~~~r~ig~hf~~-P~~~~------~ 293 (518)
++|+||.++|.+..+ .+++..+...++++.++++. |+.++. ++++.+.. .|.+|.. |+... .
T Consensus 57 ~~~~dvvi~~v~~~~~~-~~v~~~l~~~l~~g~ivid~-st~~~~~~~~~~~~~~~----~g~~~~dapvsG~~~~a~~g 130 (301)
T PRK09599 57 LPAPRVVWLMVPAGEIT-DATIDELAPLLSPGDIVIDG-GNSYYKDDIRRAELLAE----KGIHFVDVGTSGGVWGLERG 130 (301)
T ss_pred cCCCCEEEEEecCCcHH-HHHHHHHHhhCCCCCEEEeC-CCCChhHHHHHHHHHHH----cCCEEEeCCCCcCHHHHhcC
Confidence 479999999987554 46667788888888877654 333332 34444321 2445542 43221 2
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCC----cEEEeCCc-ccc---hhhh-hHHH---HHHHHHHHHH---cCCCHHHHH
Q 010109 294 LLEIVRTNQTSPQVIVDLLDIGKKIKK----TPIVVGNC-TGF---AVNR-MFFP---YTQAAFLLVE---RGTDLYLID 358 (518)
Q Consensus 294 lveiv~g~~t~~e~~~~~~~l~~~lGk----~~v~v~d~-~Gf---i~nr-il~~---~~~Ea~~l~~---~G~~~~~ID 358 (518)
+ .++.+ .++++++.++++++.+++ ..+++++. .|. ++|+ +... .+.|++.+.+ .|++++++-
T Consensus 131 ~-~~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~ 207 (301)
T PRK09599 131 Y-CLMIG--GDKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVA 207 (301)
T ss_pred C-eEEec--CCHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3 34444 478999999999999998 78888863 232 3344 3333 2689998886 578999999
Q ss_pred HHHH
Q 010109 359 RAIT 362 (518)
Q Consensus 359 ~a~~ 362 (518)
.+++
T Consensus 208 ~~~~ 211 (301)
T PRK09599 208 EVWR 211 (301)
T ss_pred HHHh
Confidence 9988
No 53
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.42 E-value=3.2e-12 Score=124.16 Aligned_cols=190 Identities=15% Similarity=0.114 Sum_probs=138.7
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 010109 147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (518)
++||+|||+|+||.+|+..|.++| .+|++.+++++..+...+ .++....+++.+
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~----------------------~~g~~~~~~~~~ 58 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAA----------------------EYGVVTTTDNQE 58 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHH----------------------HcCCcccCcHHH
Confidence 368999999999999999999999 589999999998763221 111111222335
Q ss_pred cccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEE-eCC
Q 010109 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV-RTN 301 (518)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv-~g~ 301 (518)
.+..+|+||.||. |..-.+++.++.. ..++.+|+|...+++++.|...++ ..+++..+|+.|+.....+..+ .+.
T Consensus 59 ~~~~advv~LavK--Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~~ 134 (266)
T COG0345 59 AVEEADVVFLAVK--PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISANA 134 (266)
T ss_pred HHhhCCEEEEEeC--hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecCc
Confidence 6788999999994 4456788888887 778999999999999999999987 6789999999998887766655 567
Q ss_pred CCcHHHHHHHHHHHHhcCCcEEEeCCcccchh--h---hhHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 010109 302 QTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAV--N---RMFFPYTQAAFL--LVERGTDLYLIDRAIT 362 (518)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~--n---ril~~~~~Ea~~--l~~~G~~~~~ID~a~~ 362 (518)
..+++..+.+.++++.+|+...+-.+.-.-+. . --+..++-|++. -+..|++.++.-....
T Consensus 135 ~~~~~~~~~v~~l~~~~G~v~~v~E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~ 202 (266)
T COG0345 135 NVSEEDKAFVEALLSAVGKVVEVEESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARELAA 202 (266)
T ss_pred cCCHHHHHHHHHHHHhcCCeEEechHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 88999999999999999986655421100000 0 011223556553 3457777666555443
No 54
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.42 E-value=2.7e-14 Score=149.85 Aligned_cols=158 Identities=16% Similarity=0.113 Sum_probs=119.0
Q ss_pred eEEEEEeCCcchHHHHH--HH----HhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 010109 148 KKVAILGGGLMGSGIAT--AL----ILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~--~l----a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (518)
.||+|||+|.||.+.+. .+ +.+|++|++||++++.++.....+.+.+. ... ...++..++|+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~----~~~--------~~~~I~~ttD~ 68 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVE----ELG--------APLKIEATTDR 68 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH----hcC--------CCeEEEEeCCH
Confidence 38999999999998665 23 45688999999999998876555543332 111 11467778885
Q ss_pred -ccccCCCEEEEecc----------cChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccC--cCceeecccccc
Q 010109 222 -ESFKDVDMVIEAII----------ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYS--KDRIVGAHFFSP 288 (518)
Q Consensus 222 -~~~~~aDlVIeav~----------e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~--~~r~ig~hf~~P 288 (518)
+++++||+||++++ |+..+|..+++++.+.+++++++.+++|...+.+++..+.+ | +.+.+||+||
T Consensus 69 ~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNP 147 (423)
T cd05297 69 REALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANP 147 (423)
T ss_pred HHHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCCh
Confidence 67899999999998 35889999999999999999999999999999999988764 7 8999999999
Q ss_pred cCCC-----CeE--EEEeCCCCcHHHHHHHHHHHHhcCCc
Q 010109 289 AHVM-----PLL--EIVRTNQTSPQVIVDLLDIGKKIKKT 321 (518)
Q Consensus 289 ~~~~-----~lv--eiv~g~~t~~e~~~~~~~l~~~lGk~ 321 (518)
+..+ +.. -++... .........+.+.+|..
T Consensus 148 v~i~t~~~~k~~~~rviG~c---~~~~~~~~~~a~~l~~~ 184 (423)
T cd05297 148 MAELTWALNRYTPIKTVGLC---HGVQGTAEQLAKLLGEP 184 (423)
T ss_pred HHHHHHHHHHhCCCCEEEEC---CcHHHHHHHHHHHhCCC
Confidence 8654 222 233322 22455566667777764
No 55
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.40 E-value=1.3e-11 Score=124.11 Aligned_cols=182 Identities=16% Similarity=0.138 Sum_probs=122.7
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-cc-
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK- 225 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~- 225 (518)
++|+|||+|.||..||..|+++|++|++||+++++++... +.|. ....+.++ ++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g~-------------~~~~s~~~~~~~ 56 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAG-----------KLGI-------------TARHSLEELVSK 56 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCCC-------------eecCCHHHHHHh
Confidence 3799999999999999999999999999999998776532 1221 12233333 33
Q ss_pred --CCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcch---hhhhhhccCcCceeeccccc-ccCCC------C
Q 010109 226 --DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVGAHFFS-PAHVM------P 293 (518)
Q Consensus 226 --~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i---~~la~~~~~~~r~ig~hf~~-P~~~~------~ 293 (518)
++|+||.|+|.+..+ ++++.++.+.++++.+++. +|+.++ .++++.+.. .|.+|.. |+... .
T Consensus 57 ~~~advVi~~vp~~~~~-~~v~~~i~~~l~~g~ivid-~st~~~~~~~~~~~~~~~----~g~~~vdapV~G~~~~a~~g 130 (299)
T PRK12490 57 LEAPRTIWVMVPAGEVT-ESVIKDLYPLLSPGDIVVD-GGNSRYKDDLRRAEELAE----RGIHYVDCGTSGGVWGLRNG 130 (299)
T ss_pred CCCCCEEEEEecCchHH-HHHHHHHhccCCCCCEEEE-CCCCCchhHHHHHHHHHH----cCCeEEeCCCCCCHHHHhcC
Confidence 379999999987554 4666778777888887764 344433 244444421 1345542 33221 2
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCC---cEEEeCCc-ccc---hhhhhHH-H---HHHHHHHHHH-cC--CCHHHHHH
Q 010109 294 LLEIVRTNQTSPQVIVDLLDIGKKIKK---TPIVVGNC-TGF---AVNRMFF-P---YTQAAFLLVE-RG--TDLYLIDR 359 (518)
Q Consensus 294 lveiv~g~~t~~e~~~~~~~l~~~lGk---~~v~v~d~-~Gf---i~nril~-~---~~~Ea~~l~~-~G--~~~~~ID~ 359 (518)
..-++.| ++++++.++++++.+|. ..+++++. .|. ++|+++. . .+.|++.+.+ .| ++++++-+
T Consensus 131 ~~~~~gG---~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~ 207 (299)
T PRK12490 131 YCLMVGG---DKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVAR 207 (299)
T ss_pred CeEEecC---CHHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHH
Confidence 2323344 78899999999999997 68888862 222 3444443 2 3689999987 56 78988888
Q ss_pred HHH
Q 010109 360 AIT 362 (518)
Q Consensus 360 a~~ 362 (518)
++.
T Consensus 208 ~~~ 210 (299)
T PRK12490 208 LWR 210 (299)
T ss_pred HHc
Confidence 887
No 56
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.40 E-value=4.6e-13 Score=149.18 Aligned_cols=88 Identities=22% Similarity=0.283 Sum_probs=82.7
Q ss_pred CcccchhhhhHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---cHHHHhhhcCchhHHHhhhhhhhhCCCCCccc
Q 010109 327 NCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKS 400 (518)
Q Consensus 327 d~~Gfi~nril~~~~~Ea~~l~~~G~--~~~~ID~a~~-~~G~p~---GPf~~~D~~Gld~~~~~~~~~~~~~~~~~~~~ 400 (518)
..+|||+||++.+++|||++++++|+ +++|||.+|+ |+|||+ |||+++|.+|+|.++++++.++..+++++.|+
T Consensus 613 ~~~g~i~~Rll~~~~nEa~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~~~~p~ 692 (708)
T PRK11154 613 LSANEIAERCVMLMLNEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFTPC 692 (708)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCCccCCC
Confidence 36899999999999999999999996 9999999999 999997 99999999999999999999999999988899
Q ss_pred cHHHHHHHCCCCCccCCccce
Q 010109 401 MIIPIMQEDKRAGETTRKGFY 421 (518)
Q Consensus 401 ~~l~~lv~~G~~G~k~g~GfY 421 (518)
+++.+|+++| ++||
T Consensus 693 ~~l~~~~~~~-------~~f~ 706 (708)
T PRK11154 693 ERLVEMAERG-------ESFY 706 (708)
T ss_pred HHHHHHHHcC-------CCCC
Confidence 9999999984 7786
No 57
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.40 E-value=4.7e-13 Score=148.71 Aligned_cols=88 Identities=19% Similarity=0.279 Sum_probs=82.1
Q ss_pred CcccchhhhhHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---cHHHHhhhcCchhHHHhhhhhhhhCCCCCccc
Q 010109 327 NCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKS 400 (518)
Q Consensus 327 d~~Gfi~nril~~~~~Ea~~l~~~G~--~~~~ID~a~~-~~G~p~---GPf~~~D~~Gld~~~~~~~~~~~~~~~~~~~~ 400 (518)
..+||++||++.+++|||++++++|+ +|+|||.+++ ++|||+ |||+++|.+|+|.++++++.++..+++++.|+
T Consensus 606 ~~~g~v~~Rll~~~~~Ea~~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~~~~p~ 685 (699)
T TIGR02440 606 KEASAVAERCVMLMLNEAVRCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTPC 685 (699)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCCCcCCC
Confidence 36899999999999999999999996 9999999999 999995 99999999999999999999999999888899
Q ss_pred cHHHHHHHCCCCCccCCccce
Q 010109 401 MIIPIMQEDKRAGETTRKGFY 421 (518)
Q Consensus 401 ~~l~~lv~~G~~G~k~g~GfY 421 (518)
+++.+|+++| +.||
T Consensus 686 ~~L~~~~~~~-------~~f~ 699 (699)
T TIGR02440 686 QRLVAMAAEK-------QSFY 699 (699)
T ss_pred HHHHHHHHcC-------CCcC
Confidence 9999999984 6686
No 58
>PLN02256 arogenate dehydrogenase
Probab=99.39 E-value=7.6e-12 Score=125.43 Aligned_cols=153 Identities=13% Similarity=0.064 Sum_probs=111.4
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c-
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F- 224 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~- 224 (518)
.++|+|||+|.||+++|..+.+.|++|+++|+++.. +.+. +.|. ...++.++ +
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~-----------~~gv-------------~~~~~~~e~~~ 90 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAA-----------ELGV-------------SFFRDPDDFCE 90 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHH-----------HcCC-------------eeeCCHHHHhh
Confidence 368999999999999999999999999999998632 2111 1121 11233333 3
Q ss_pred cCCCEEEEecccChHhHHHHHHHH-hhhCCCCcEEEEcCCC--cchhhhhhhccCcCceeecccccccCCC------CeE
Q 010109 225 KDVDMVIEAIIENVSLKQQIFADL-EKYCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSPAHVM------PLL 295 (518)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l-~~~~~~~~il~sntS~--l~i~~la~~~~~~~r~ig~hf~~P~~~~------~lv 295 (518)
.++|+||.|+|.. .-.+++.++ ...++++++|++.+|+ .+++.+...++...+|+|.||+.++... .-+
T Consensus 91 ~~aDvVilavp~~--~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~ 168 (304)
T PLN02256 91 EHPDVVLLCTSIL--STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPF 168 (304)
T ss_pred CCCCEEEEecCHH--HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeE
Confidence 4699999999864 346778887 5667899999998884 4566777666555589999999876542 111
Q ss_pred EEEeC----CCCcHHHHHHHHHHHHhcCCcEEEeC
Q 010109 296 EIVRT----NQTSPQVIVDLLDIGKKIKKTPIVVG 326 (518)
Q Consensus 296 eiv~g----~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (518)
.+.+. +.++++.++.+.++++.+|..++.+.
T Consensus 169 ~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~ 203 (304)
T PLN02256 169 VYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMS 203 (304)
T ss_pred EEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 12221 56788899999999999999999886
No 59
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.39 E-value=1.4e-11 Score=129.18 Aligned_cols=198 Identities=14% Similarity=0.148 Sum_probs=126.3
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCCHHHHHhhhcccccc
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR--------VRANLQSRVKKGKMTQEKFEKTISLLTGV 218 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 218 (518)
++||+|||+|.||.++|..|+++||+|++||++++.++..... +...+.+.++. +++..+
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~------------g~l~~~ 70 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEG------------GYLRAT 70 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhc------------Cceeee
Confidence 5799999999999999999999999999999999988763210 11111111112 233344
Q ss_pred cCcccccCCCEEEEecccC--------hHhHHHHHHHHhhhCCCCcEEEEcCCCcchh---hhhhhccC--cC-ce----
Q 010109 219 LDYESFKDVDMVIEAIIEN--------VSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYS--KD-RI---- 280 (518)
Q Consensus 219 ~~~~~~~~aDlVIeav~e~--------~~~k~~v~~~l~~~~~~~~il~sntS~l~i~---~la~~~~~--~~-r~---- 280 (518)
++ +++||+||.|||.. ......+.+.+.++++++++++ ..||.++. ++...+.. +. ++
T Consensus 71 ~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI-~~STv~pgtt~~~~~~l~~~~~~~~~~~~~ 146 (415)
T PRK11064 71 TT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVI-LESTSPVGATEQMAEWLAEARPDLTFPQQA 146 (415)
T ss_pred cc---cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEE-EeCCCCCCHHHHHHHHHHHhccCCcccccc
Confidence 33 45899999999974 2344566788888999998775 34555443 33322211 00 00
Q ss_pred -ee--cc-cccc--cCCCC-------eEEEEeCCCCcHHHHHHHHHHHHhcCCcEEEeCCc-ccc---hhhhhHH----H
Q 010109 281 -VG--AH-FFSP--AHVMP-------LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFF----P 339 (518)
Q Consensus 281 -ig--~h-f~~P--~~~~~-------lveiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~Gf---i~nril~----~ 339 (518)
.+ .+ -++| +..+. +.-++.| .+++..+.+.++++.++..++++++. .+. ++|+++. +
T Consensus 147 g~~~~f~v~~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia 224 (415)
T PRK11064 147 GEQADINIAYCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIA 224 (415)
T ss_pred cCCCCeEEEECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 00 01 1345 21111 1134544 37889999999999999877777752 222 3444333 5
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHHH
Q 010109 340 YTQAAFLLVE-RGTDLYLIDRAIT 362 (518)
Q Consensus 340 ~~~Ea~~l~~-~G~~~~~ID~a~~ 362 (518)
++||+..+.+ .|+++.++-+++.
T Consensus 225 ~~nE~~~lae~~GiD~~~v~~~~~ 248 (415)
T PRK11064 225 FANELSLICADQGINVWELIRLAN 248 (415)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHhc
Confidence 6899998876 6999999877764
No 60
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.38 E-value=2.8e-12 Score=132.89 Aligned_cols=199 Identities=17% Similarity=0.235 Sum_probs=119.7
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (518)
|||+|||+|.||.++|..++. ||+|++||+++++++...+.+...++..+++ -......+++.+++. +.+.+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~------~l~~~~~~l~~t~~~~~~~~~ 73 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQ------FLQSDKIHFNATLDKNEAYRD 73 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHH------HHHhCCCcEEEecchhhhhcC
Confidence 489999999999999988875 9999999999999887654322111111110 000112345455554 45789
Q ss_pred CCEEEEecccChHhH---------HHHHHHHhhhCCCCcEEEEcCCCcchh---hhhhhccCcCceeecccccccCCCC-
Q 010109 227 VDMVIEAIIENVSLK---------QQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFSPAHVMP- 293 (518)
Q Consensus 227 aDlVIeav~e~~~~k---------~~v~~~l~~~~~~~~il~sntS~l~i~---~la~~~~~~~r~ig~hf~~P~~~~~- 293 (518)
||+||+|||++.+.| .++.+.+.+ ++++.+++ ..||+++. ++...+. + .++.| +|....+
T Consensus 74 ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV-~~STv~pgtt~~l~~~~~--~--~~v~~-~PE~l~~G 146 (388)
T PRK15057 74 ADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMV-IKSTVPVGFTAAMHKKYR--T--ENIIF-SPEFLREG 146 (388)
T ss_pred CCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEE-EeeecCCchHHHHHHHhh--c--CcEEE-CcccccCC
Confidence 999999999874333 455567766 57777664 45666654 3333221 1 13333 5543221
Q ss_pred -eE-------EEEeCCCCcHHHHHHHHHHHHh--cCC-cEEEeCCc-ccc---hhhhhHH----HHHHHHHHHHH-cCCC
Q 010109 294 -LL-------EIVRTNQTSPQVIVDLLDIGKK--IKK-TPIVVGNC-TGF---AVNRMFF----PYTQAAFLLVE-RGTD 353 (518)
Q Consensus 294 -lv-------eiv~g~~t~~e~~~~~~~l~~~--lGk-~~v~v~d~-~Gf---i~nril~----~~~~Ea~~l~~-~G~~ 353 (518)
++ -++.|. +++..+.+.+++.. ++. .++++.+. .+. ++++++. +++||...+.+ .|++
T Consensus 147 ~a~~d~~~p~rvv~G~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD 224 (388)
T PRK15057 147 KALYDNLHPSRIVIGE--RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLN 224 (388)
T ss_pred cccccccCCCEEEEEc--CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 10 234442 34556677777744 454 44355542 222 3444333 56899988876 6999
Q ss_pred HHHHHHHHH
Q 010109 354 LYLIDRAIT 362 (518)
Q Consensus 354 ~~~ID~a~~ 362 (518)
++++-.++.
T Consensus 225 ~~eV~~a~~ 233 (388)
T PRK15057 225 TRQIIEGVC 233 (388)
T ss_pred HHHHHHHhc
Confidence 999888874
No 61
>PLN02858 fructose-bisphosphate aldolase
Probab=99.38 E-value=1.3e-11 Score=145.33 Aligned_cols=186 Identities=16% Similarity=0.130 Sum_probs=133.7
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-cccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~~ 226 (518)
++||+||+|.||.+||.+|+++||+|++||+++++.+... +.|.. ...+ .+..++
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~Ga~-------------~~~s~~e~a~~ 60 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFC-----------ELGGH-------------RCDSPAEAAKD 60 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcCCe-------------ecCCHHHHHhc
Confidence 5899999999999999999999999999999999887643 23321 1223 355778
Q ss_pred CCEEEEecccChHhHHHHH--HHHhhhCCCCcEEEEcCCCcchh---hhhhhccCcCceee--cccc-cccC-------C
Q 010109 227 VDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVG--AHFF-SPAH-------V 291 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~--~~l~~~~~~~~il~sntS~l~i~---~la~~~~~~~r~ig--~hf~-~P~~-------~ 291 (518)
||+||.|+|.+..++..++ ..+.+.+.++.+++ ++||++++ ++++.+.. .| .+|. .|+. .
T Consensus 61 advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iiv-d~STi~p~~~~~la~~l~~----~g~~~~~lDaPVsGg~~~A~~ 135 (1378)
T PLN02858 61 AAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVIL-IRSTILPLQLQKLEKKLTE----RKEQIFLVDAYVSKGMSDLLN 135 (1378)
T ss_pred CCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEE-ECCCCCHHHHHHHHHHHHh----cCCceEEEEccCcCCHHHHhc
Confidence 9999999999887765555 34677778888775 46677665 44444421 13 4444 2443 3
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHHhcCCcEEEe-CC-cccc---hhhhhHHH----HHHHHHHHHH-cCCCHHHHHHHH
Q 010109 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV-GN-CTGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAI 361 (518)
Q Consensus 292 ~~lveiv~g~~t~~e~~~~~~~l~~~lGk~~v~v-~d-~~Gf---i~nril~~----~~~Ea~~l~~-~G~~~~~ID~a~ 361 (518)
..|..++.| ++++++.++++++.+|+..+++ ++ ..|. ++|+++.. .+.||+.+.+ .|++++.+-.++
T Consensus 136 G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl 212 (1378)
T PLN02858 136 GKLMIIASG---RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDII 212 (1378)
T ss_pred CCeEEEEcC---CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 456656666 7889999999999999988865 64 2333 45655543 3689998875 699999999888
Q ss_pred H-hcC
Q 010109 362 T-KFG 365 (518)
Q Consensus 362 ~-~~G 365 (518)
. +.|
T Consensus 213 ~~s~g 217 (1378)
T PLN02858 213 SNAAG 217 (1378)
T ss_pred hcCCc
Confidence 7 554
No 62
>PRK07680 late competence protein ComER; Validated
Probab=99.38 E-value=2.6e-11 Score=120.47 Aligned_cols=152 Identities=13% Similarity=0.064 Sum_probs=109.9
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 010109 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (518)
++|+|||+|.||..|+..|.++|+ +|+++|++++..+...++ . ..+..+.+. +
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~----------~------------~g~~~~~~~~~ 58 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER----------Y------------PGIHVAKTIEE 58 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH----------c------------CCeEEECCHHH
Confidence 379999999999999999999994 799999999876543210 0 012223333 4
Q ss_pred cccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeE-EEEeCC
Q 010109 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL-EIVRTN 301 (518)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lv-eiv~g~ 301 (518)
.+.++|+||.|++.. .-.++++++.+.++++++|+|.+++++++.+...+. .+++..++..|......+ -++.+.
T Consensus 59 ~~~~aDiVilav~p~--~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~ 134 (273)
T PRK07680 59 VISQSDLIFICVKPL--DIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGS 134 (273)
T ss_pred HHHhCCEEEEecCHH--HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCC
Confidence 478999999999743 346788888888888889989999899998887764 345566665553222222 334566
Q ss_pred CCcHHHHHHHHHHHHhcCCcEEEeC
Q 010109 302 QTSPQVIVDLLDIGKKIKKTPIVVG 326 (518)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (518)
..+++..+.+.+++..+|. ++.+.
T Consensus 135 ~~~~~~~~~~~~ll~~~G~-~~~i~ 158 (273)
T PRK07680 135 RCSEEDQQKLERLFSNIST-PLVIE 158 (273)
T ss_pred CCCHHHHHHHHHHHHcCCC-EEEEC
Confidence 6778888999999999995 55554
No 63
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.36 E-value=5.3e-11 Score=121.05 Aligned_cols=205 Identities=16% Similarity=0.108 Sum_probs=135.0
Q ss_pred hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccCCCEEEEecccC
Q 010109 159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIEN 237 (518)
Q Consensus 159 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVIeav~e~ 237 (518)
|.+||..|+++||+|++||++++.++... ++.....| ++.+++. +.+++||+||.|+|..
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~------~~~l~~~G-------------i~~asd~~eaa~~ADvVIlaVP~~ 92 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEEL------WKKVEDAG-------------VKVVSDDAEAAKHGEIHILFTPFG 92 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHH------HHHHHHCC-------------CEEeCCHHHHHhCCCEEEEECCCc
Confidence 88999999999999999999998654311 11122223 2233333 5578999999999976
Q ss_pred hHhHHHHHHHHhhhCCCCcEEEEcCCCcchhh----hhhhccCcCceeecccccccCC----CCeEEEEeCC------CC
Q 010109 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNL----IGERTYSKDRIVGAHFFSPAHV----MPLLEIVRTN------QT 303 (518)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~----la~~~~~~~r~ig~hf~~P~~~----~~lveiv~g~------~t 303 (518)
. ..++++..+.+.++++++|+ ++|+.+... +.+.+..+.+.+|.||+.|... ...++++.+. ..
T Consensus 93 ~-~v~~Vl~~L~~~L~~g~IVI-d~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~ 170 (342)
T PRK12557 93 K-KTVEIAKNILPHLPENAVIC-NTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELA 170 (342)
T ss_pred H-HHHHHHHHHHhhCCCCCEEE-EecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCC
Confidence 4 45678888999999999877 455655543 3344544456778888876532 2234555543 34
Q ss_pred cHHHHHHHHHHHHhcCCcEEEeCCcccc---hhhhhHHHH----HHHHHHHHH-cCCCHHHHHHHHH-hcCCCccHHHHh
Q 010109 304 SPQVIVDLLDIGKKIKKTPIVVGNCTGF---AVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT-KFGMPMGPFRLA 374 (518)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v~d~~Gf---i~nril~~~----~~Ea~~l~~-~G~~~~~ID~a~~-~~G~p~GPf~~~ 374 (518)
+++.++.++++++.+|+.+++++...|. ..|.++.+. ..|++.+.+ .|.+|.+.-+-+. .. -.|--.++
T Consensus 171 ~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~--~~~~a~l~ 248 (342)
T PRK12557 171 TEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMT--LQTMASLV 248 (342)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHHHHHHH
Confidence 8889999999999999989888743333 235555433 578888775 4666655433322 11 13556777
Q ss_pred hhcCchhHHHhh
Q 010109 375 DLVGFGVAIATG 386 (518)
Q Consensus 375 D~~Gld~~~~~~ 386 (518)
-..|+|...+.+
T Consensus 249 ~~~~~~~~~~~~ 260 (342)
T PRK12557 249 ETSGVDGLLKAL 260 (342)
T ss_pred HHhChHHHHHhc
Confidence 777887766654
No 64
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.36 E-value=3.1e-11 Score=122.87 Aligned_cols=198 Identities=16% Similarity=0.106 Sum_probs=121.6
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHhhhcccccccCcc-cc
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE-KFEKTISLLTGVLDYE-SF 224 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~~ 224 (518)
|+||+|||+|.||+.+|..|+++|++|++||++++.++...+ .+..... .-......+..+++.+ .+
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINA-----------DRENPRYLPGIKLPDNLRATTDLAEAL 69 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-----------cCcccccCCCCcCCCCeEEeCCHHHHH
Confidence 468999999999999999999999999999999987765432 1100000 0000001233344553 56
Q ss_pred cCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchh---hhhhhccC--cCceeecccccccC------CC-
Q 010109 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYS--KDRIVGAHFFSPAH------VM- 292 (518)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~---~la~~~~~--~~r~ig~hf~~P~~------~~- 292 (518)
++||+||.|+|.. ....++.++.+.+++++++++.+++++.. .+++.+.. +..........|.. ..
T Consensus 70 ~~~D~vi~~v~~~--~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~ 147 (325)
T PRK00094 70 ADADLILVAVPSQ--ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLP 147 (325)
T ss_pred hCCCEEEEeCCHH--HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCC
Confidence 8999999999974 46788889988888999888777666653 11222110 11000011112332 11
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCcEEEeCCcccc---------------------hhhhhH----HHHHHHHHHH
Q 010109 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF---------------------AVNRMF----FPYTQAAFLL 347 (518)
Q Consensus 293 ~lveiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gf---------------------i~nril----~~~~~Ea~~l 347 (518)
.++.+ .+ .+.+.++.+.++++..|..+....|..|. +.|..+ ...++|++.+
T Consensus 148 ~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~l 224 (325)
T PRK00094 148 TAVVI-AS--TDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRL 224 (325)
T ss_pred cEEEE-Ee--CCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHH
Confidence 22333 33 36788999999999999877776654331 122222 2346777777
Q ss_pred HH-cCCCHHHHHHH
Q 010109 348 VE-RGTDLYLIDRA 360 (518)
Q Consensus 348 ~~-~G~~~~~ID~a 360 (518)
.+ .|++++.+...
T Consensus 225 a~~~G~d~~~~~~~ 238 (325)
T PRK00094 225 GVALGANPETFLGL 238 (325)
T ss_pred HHHhCCChhhhhcc
Confidence 64 57777776543
No 65
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.35 E-value=2.9e-11 Score=121.36 Aligned_cols=185 Identities=17% Similarity=0.104 Sum_probs=127.6
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (518)
++|+|||.|.||.++|..|..+|++|++++++.++..... .+.|. ...+..+.+++|
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A----------~~~G~-------------~~~s~~eaa~~A 74 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKA----------EADGF-------------EVLTVAEAAKWA 74 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHH----------HHCCC-------------eeCCHHHHHhcC
Confidence 6899999999999999999999999999888754332211 01121 112223557899
Q ss_pred CEEEEecccChHhHHHHH-HHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccC-------CCCeEE-EE
Q 010109 228 DMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH-------VMPLLE-IV 298 (518)
Q Consensus 228 DlVIeav~e~~~~k~~v~-~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~-------~~~lve-iv 298 (518)
|+|+.++|.... ..++ +++.+.++++++| +.++++++..+....+...+++-.+|..|.+ .+..+. ++
T Consensus 75 DVVvLaVPd~~~--~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~ 151 (330)
T PRK05479 75 DVIMILLPDEVQ--AEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLI 151 (330)
T ss_pred CEEEEcCCHHHH--HHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEE
Confidence 999999996643 6777 7799999999988 8889999988765554455788888999887 333332 23
Q ss_pred -eCCCCcHHHHHHHHHHHHhcCCcEE-----EeCC-c-ccchhhh-hH----HHHHHHHHHH-HHcCCCHHHHH
Q 010109 299 -RTNQTSPQVIVDLLDIGKKIKKTPI-----VVGN-C-TGFAVNR-MF----FPYTQAAFLL-VERGTDLYLID 358 (518)
Q Consensus 299 -~g~~t~~e~~~~~~~l~~~lGk~~v-----~v~d-~-~Gfi~nr-il----~~~~~Ea~~l-~~~G~~~~~ID 358 (518)
.+...+.+..+.+..++..+|.++. .+.+ . ...+..+ ++ ..++..++.. ++.|.+|+..-
T Consensus 152 av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay 225 (330)
T PRK05479 152 AVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAY 225 (330)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 3455568889999999999998875 3332 1 1222222 22 2345666654 46788877643
No 66
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.34 E-value=2.1e-11 Score=121.27 Aligned_cols=153 Identities=15% Similarity=0.080 Sum_probs=118.0
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCC----CcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 010109 147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G----~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (518)
|++|+|||+|.||.+|+..|.++| ++|++|+++++. ++... .. ......+.+.
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~-----------~~-----------~~~~~~~~~~ 58 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLY-----------DK-----------YPTVELADNE 58 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHH-----------HH-----------cCCeEEeCCH
Confidence 468999999999999999999998 789999987532 22211 00 0011122333
Q ss_pred -ccccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEE-e
Q 010109 222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV-R 299 (518)
Q Consensus 222 -~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv-~ 299 (518)
+.+.++|+||.|+|.. .-.+++.++.+.++++++|+|.+.++++++|.+.++. .+++..+|+.|+.....+..+ .
T Consensus 59 ~e~~~~aDvVilavpp~--~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~ 135 (277)
T PRK06928 59 AEIFTKCDHSFICVPPL--AVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAH 135 (277)
T ss_pred HHHHhhCCEEEEecCHH--HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEec
Confidence 3478999999999854 4568888888888888889999999999999987753 489999999998877666655 5
Q ss_pred CCCCcHHHHHHHHHHHHhcCCcEEE
Q 010109 300 TNQTSPQVIVDLLDIGKKIKKTPIV 324 (518)
Q Consensus 300 g~~t~~e~~~~~~~l~~~lGk~~v~ 324 (518)
++..+++..+.+..++..+|+...+
T Consensus 136 ~~~~~~~~~~~v~~l~~~~G~~~~v 160 (277)
T PRK06928 136 AETVNEANKSRLEETLSHFSHVMTI 160 (277)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 6677889999999999999987654
No 67
>PLN02858 fructose-bisphosphate aldolase
Probab=99.33 E-value=2.9e-11 Score=142.38 Aligned_cols=191 Identities=19% Similarity=0.226 Sum_probs=132.2
Q ss_pred cceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 010109 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (518)
Q Consensus 146 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (518)
..++|||||+|.||.+||..|+++|++|++||+++++++... +.|.. ...+..+.++
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~Ga~------------~~~s~~e~~~ 379 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFE-----------NAGGL------------AGNSPAEVAK 379 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcCCe------------ecCCHHHHHh
Confidence 348999999999999999999999999999999998876532 22321 1122235578
Q ss_pred CCCEEEEecccChHhHHHHHH--HHhhhCCCCcEEEEcCCCcchh---hhhhhccCcCceeeccccc-ccC-------CC
Q 010109 226 DVDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAH-------VM 292 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~l~i~---~la~~~~~~~r~ig~hf~~-P~~-------~~ 292 (518)
+||+||.|||...+++..++. .+...+.++.+++ ++||+++. ++++.+.. .-.|.+|.. |+. ..
T Consensus 380 ~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivV-d~STvsP~~~~~la~~l~~--~g~g~~~lDAPVsGg~~~A~~G 456 (1378)
T PLN02858 380 DVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIV-LSSTVSPGFVIQLERRLEN--EGRDIKLVDAPVSGGVKRAAMG 456 (1378)
T ss_pred cCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHHh--hCCCcEEEEccCCCChhhhhcC
Confidence 999999999987776655543 3556677888775 45666665 34444321 013556653 443 23
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCcEEEeCCccc--c---hhhhhHHH----HHHHHHHHHH-cCCCHHHHHHHHH
Q 010109 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG--F---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT 362 (518)
Q Consensus 293 ~lveiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G--f---i~nril~~----~~~Ea~~l~~-~G~~~~~ID~a~~ 362 (518)
.+.-++.| +++.++.++++++.+|+..+++...+| . ++|+++.. .++|++.+.+ .|++++.+-+++.
T Consensus 457 ~L~imvgG---~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~ 533 (1378)
T PLN02858 457 TLTIMASG---TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIIS 533 (1378)
T ss_pred CceEEEEC---CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45555565 678999999999999998877543223 2 45665543 4689988875 7999999888877
Q ss_pred -hcC
Q 010109 363 -KFG 365 (518)
Q Consensus 363 -~~G 365 (518)
+.|
T Consensus 534 ~s~g 537 (1378)
T PLN02858 534 NAGG 537 (1378)
T ss_pred hhcc
Confidence 544
No 68
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.32 E-value=3.7e-11 Score=127.02 Aligned_cols=190 Identities=15% Similarity=0.143 Sum_probs=126.0
Q ss_pred EEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc----cc
Q 010109 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE----SF 224 (518)
Q Consensus 149 kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~----~~ 224 (518)
+|||||+|.||.+||..|+++|++|++||+++++.+...+. ...|. .+....+.+ .+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~--------~~~g~-----------~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAE--------HAKGK-----------KIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhh--------ccCCC-----------CceecCCHHHHHhhc
Confidence 48999999999999999999999999999999988764321 00010 011122222 34
Q ss_pred cCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchh--hhhhhc-cCcCceeeccccccc---CCCCeEEEE
Q 010109 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERT-YSKDRIVGAHFFSPA---HVMPLLEIV 298 (518)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~--~la~~~-~~~~r~ig~hf~~P~---~~~~lveiv 298 (518)
+++|+||.+||....+ .+++.++.+.++++.||++.+++.+.+ +..+.+ .+..+|+++.....+ ...+ .++
T Consensus 62 ~~~dvIil~v~~~~~v-~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~--~im 138 (467)
T TIGR00873 62 ERPRKIMLMVKAGAPV-DAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP--SIM 138 (467)
T ss_pred CCCCEEEEECCCcHHH-HHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC--cCC
Confidence 6799999999987655 567788988899998887665544333 233333 222334443322211 1223 344
Q ss_pred eCCCCcHHHHHHHHHHHHhcCCcE------EEeCC-cccc----hhhhhHHHH---HHHHHHHHH--cCCCHHHHHHHHH
Q 010109 299 RTNQTSPQVIVDLLDIGKKIKKTP------IVVGN-CTGF----AVNRMFFPY---TQAAFLLVE--RGTDLYLIDRAIT 362 (518)
Q Consensus 299 ~g~~t~~e~~~~~~~l~~~lGk~~------v~v~d-~~Gf----i~nril~~~---~~Ea~~l~~--~G~~~~~ID~a~~ 362 (518)
.| .++++++.++++++.++..+ .++++ ..|. +.|-+.+.+ +.|++.++. .|++++++-.++.
T Consensus 139 ~G--G~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~ 216 (467)
T TIGR00873 139 PG--GSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFT 216 (467)
T ss_pred CC--CCHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 44 47899999999999998763 67775 3343 334455443 689999874 6889999988885
No 69
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.31 E-value=1e-10 Score=115.21 Aligned_cols=181 Identities=13% Similarity=0.076 Sum_probs=122.3
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 010109 148 KKVAILGGGLMGSGIATALILSNYP---VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (518)
+||+|||+|.||.+|+..|.++|++ |.++++++++.+...+. . .......+. +.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~----------~------------~~~~~~~~~~~~ 58 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAER----------F------------PKVRIAKDNQAV 58 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHH----------c------------CCceEeCCHHHH
Confidence 3799999999999999999999864 57899998876653211 0 011123333 34
Q ss_pred ccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEEeCCCC
Q 010109 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (518)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~g~~t 303 (518)
+.+||+||.|+|. +....++.++. +.++.+++|..++++++.+...++...+++..||+.|......+..+...
T Consensus 59 ~~~aDvVilav~p--~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~-- 132 (258)
T PRK06476 59 VDRSDVVFLAVRP--QIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP-- 132 (258)
T ss_pred HHhCCEEEEEeCH--HHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC--
Confidence 6789999999984 33467777662 46778888888999999999887655577788888776544444444331
Q ss_pred cHHHHHHHHHHHHhcCCcEEEeCC--ccc------chhhhhHHHHHHHHHHH-HHcCCCHHHHHHHHH
Q 010109 304 SPQVIVDLLDIGKKIKKTPIVVGN--CTG------FAVNRMFFPYTQAAFLL-VERGTDLYLIDRAIT 362 (518)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v~d--~~G------fi~nril~~~~~Ea~~l-~~~G~~~~~ID~a~~ 362 (518)
.+.+.++++.+|..+++..+ ... +..| ++.++.++..+ ...|+++++...++.
T Consensus 133 ----~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~--~~~~~~~~~~~~~~~Gl~~~~a~~~~~ 194 (258)
T PRK06476 133 ----DPFVAALFDALGTAVECDSEEEYDLLAAASALMAT--YFGILETATGWLEEQGLKRQKARAYLA 194 (258)
T ss_pred ----HHHHHHHHHhcCCcEEECChHhccceeehhccHHH--HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 25788999999988774422 111 1112 12244555544 457899888777654
No 70
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.28 E-value=1.1e-10 Score=117.40 Aligned_cols=205 Identities=16% Similarity=0.085 Sum_probs=138.1
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (518)
++|+|||+|.||.++|..|..+|++|+++++. .+..+.+. +.|. ...+..+.+++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-----------~~Gv-------------~~~s~~ea~~~ 59 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-----------EDGF-------------KVGTVEEAIPQ 59 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-----------HCCC-------------EECCHHHHHhc
Confidence 58999999999999999999999998876554 33333321 1221 12223345789
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCC-------CCeE-EEE
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-------MPLL-EIV 298 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~-------~~lv-eiv 298 (518)
||+|+.++|.... ...+++++.+.++++. ++|...++++..+...++...+++...|+.|.+. +..+ -++
T Consensus 60 ADiVvLaVpp~~~-~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~ 137 (314)
T TIGR00465 60 ADLIMNLLPDEVQ-HEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLI 137 (314)
T ss_pred CCEEEEeCCcHhH-HHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEE
Confidence 9999999996533 4566777888888886 5688899999998877755557999999999973 5444 343
Q ss_pred -eCCCCcHHHHHHHHHHHHhcCCc-------EE--EeC-Ccccc--hhhhhHHHHHHHHH-HHHHcCCCHHHHHHHHH-h
Q 010109 299 -RTNQTSPQVIVDLLDIGKKIKKT-------PI--VVG-NCTGF--AVNRMFFPYTQAAF-LLVERGTDLYLIDRAIT-K 363 (518)
Q Consensus 299 -~g~~t~~e~~~~~~~l~~~lGk~-------~v--~v~-d~~Gf--i~nril~~~~~Ea~-~l~~~G~~~~~ID~a~~-~ 363 (518)
.+...+.+..+.+..++..+|.+ .. .+. |--+. ...-..-+|+...+ .|++.|.+|+.--.... .
T Consensus 138 a~~~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~ealv~~G~~~e~A~~~~~~~ 217 (314)
T TIGR00465 138 AVEQDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQPELAYFETVHE 217 (314)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 66667888999999999999987 31 221 11111 11111223322222 23789998887665543 2
Q ss_pred cCCCccHHHHhhhcCchh
Q 010109 364 FGMPMGPFRLADLVGFGV 381 (518)
Q Consensus 364 ~G~p~GPf~~~D~~Gld~ 381 (518)
+ .|-.+++-..|+..
T Consensus 218 ~---~g~~~l~~e~g~~~ 232 (314)
T TIGR00465 218 L---KLIVDLIYEGGITG 232 (314)
T ss_pred H---HHHHHHHHHhcHHH
Confidence 2 57777777777743
No 71
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.27 E-value=1.8e-10 Score=120.82 Aligned_cols=197 Identities=15% Similarity=0.126 Sum_probs=124.6
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC--C---HHHHHhhhcccccccCcc
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM--T---QEKFEKTISLLTGVLDYE 222 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~--~---~~~~~~~~~~i~~~~~~~ 222 (518)
+||+|||.|.||..+|.+|++ ||+|++||+++++++... +|.. . .++... ..++.++++.+
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~------------~G~~~~~e~~~~~l~~-~g~l~~t~~~~ 72 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK------------NGVDVNLETTEEELRE-ARYLKFTSEIE 72 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH------------CcCCCCCCCCHHHHHh-hCCeeEEeCHH
Confidence 689999999999999999887 699999999999988743 2221 0 111111 23566777778
Q ss_pred cccCCCEEEEecccCh------HhH--HHHHHHHhhhCCCCcEEEEcCCCcchhhhh----hhccC--cCceeeccc---
Q 010109 223 SFKDVDMVIEAIIENV------SLK--QQIFADLEKYCPPHCILASNTSTIDLNLIG----ERTYS--KDRIVGAHF--- 285 (518)
Q Consensus 223 ~~~~aDlVIeav~e~~------~~k--~~v~~~l~~~~~~~~il~sntS~l~i~~la----~~~~~--~~r~ig~hf--- 285 (518)
.+++||+||.|||... ++. ....+.|.++++++.+++ ..||+++.... ..+.. ..++ +-.|
T Consensus 73 ~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI-~~STv~pgtt~~~~~~~l~~~~g~~~-~~~~~~~ 150 (425)
T PRK15182 73 KIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVV-YESTVYPGCTEEECVPILARMSGMTF-NQDFYVG 150 (425)
T ss_pred HHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEE-EecCCCCcchHHHHHHHHHhccCCCc-CCCeeEe
Confidence 8899999999998652 222 223356888888888765 45666554222 11111 0011 1111
Q ss_pred ccccCCC---------CeEEEEeCCCCcHHHHHHHHHHHHhcC-CcEEEeCC-cccc---hhhhhHH----HHHHHHHHH
Q 010109 286 FSPAHVM---------PLLEIVRTNQTSPQVIVDLLDIGKKIK-KTPIVVGN-CTGF---AVNRMFF----PYTQAAFLL 347 (518)
Q Consensus 286 ~~P~~~~---------~lveiv~g~~t~~e~~~~~~~l~~~lG-k~~v~v~d-~~Gf---i~nril~----~~~~Ea~~l 347 (518)
|+|.... .+--++.|. +++..+.+..+++.+. ..++++.+ ..+. ++|+++. +++||++.+
T Consensus 151 ~~PE~v~~G~a~~~~~~~~riv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~l 228 (425)
T PRK15182 151 YSPERINPGDKKHRLTNIKKITSGS--TAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAII 228 (425)
T ss_pred eCCCcCCCCcccccccCCCeEEECC--CHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2343221 122255553 4778888999998875 34566654 2232 4454443 568999988
Q ss_pred HH-cCCCHHHHHHHHH
Q 010109 348 VE-RGTDLYLIDRAIT 362 (518)
Q Consensus 348 ~~-~G~~~~~ID~a~~ 362 (518)
.+ .|+++.++-.++.
T Consensus 229 ae~~GiD~~~v~~a~~ 244 (425)
T PRK15182 229 FNRLNIDTEAVLRAAG 244 (425)
T ss_pred HHHhCcCHHHHHHHhc
Confidence 76 6999999877764
No 72
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.26 E-value=2.3e-10 Score=111.74 Aligned_cols=189 Identities=14% Similarity=0.174 Sum_probs=127.8
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCC---c-EEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 010109 147 VKKVAILGGGLMGSGIATALILSNY---P-VILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~---~-V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (518)
.+||+|||+|.||.+++..++++|+ + |+++++ +++.++...+. .+ +..+.+.
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------~~-------------~~~~~~~ 60 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQAR----------YN-------------VSTTTDW 60 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHH----------cC-------------cEEeCCh
Confidence 3589999999999999999998873 3 777887 46655442210 01 1123344
Q ss_pred -ccccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEE-EEe
Q 010109 222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVR 299 (518)
Q Consensus 222 -~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lve-iv~ 299 (518)
+.+.++|+||.|+|... -++++.++.+.++ +.+|+|.+.+++++.|...++...+++..||+.|......+. ++.
T Consensus 61 ~~~~~~~DiViiavp~~~--~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~ 137 (245)
T PRK07634 61 KQHVTSVDTIVLAMPPSA--HEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTM 137 (245)
T ss_pred HHHHhcCCEEEEecCHHH--HHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEee
Confidence 34789999999998653 4678888877665 568889999999999998886556788899987766544333 335
Q ss_pred CCCCcHHHHHHHHHHHHhcCCcEEEeCCcccchhh---hh---HHHHHHHHH--HHHHcCCCHHHHHHHHH
Q 010109 300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVN---RM---FFPYTQAAF--LLVERGTDLYLIDRAIT 362 (518)
Q Consensus 300 g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~n---ri---l~~~~~Ea~--~l~~~G~~~~~ID~a~~ 362 (518)
....+++..+.+..++..+|..+++ .+..-..+. -. +..++.+++ ..+..|+++++-.+++.
T Consensus 138 ~~~~~~~~~~~v~~lf~~~G~~~~~-~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~ 207 (245)
T PRK07634 138 GQSVNETHKETLQLILKGIGTSQLC-TEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVI 207 (245)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE-CHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5667889999999999999998864 421111111 01 111233332 23456888887666654
No 73
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.25 E-value=6.2e-11 Score=121.26 Aligned_cols=147 Identities=13% Similarity=0.087 Sum_probs=106.5
Q ss_pred eEEEEEeC-CcchHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-cccc
Q 010109 148 KKVAILGG-GLMGSGIATALIL-SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESF 224 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~-~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~ 224 (518)
++|+|||. |.||+++|..|.+ .|++|+.+|++.+. ..+ .+.+
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-----------------------------------~~~~~~~v 49 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-----------------------------------SLDPATLL 49 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-----------------------------------cCCHHHHh
Confidence 58999999 9999999999986 48999999985210 111 2457
Q ss_pred cCCCEEEEecccChHhHHHHHHHHhhh---CCCCcEEEEcCCCcc-h-hhhhhhccCcCceeecccccccCC-----CCe
Q 010109 225 KDVDMVIEAIIENVSLKQQIFADLEKY---CPPHCILASNTSTID-L-NLIGERTYSKDRIVGAHFFSPAHV-----MPL 294 (518)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~---~~~~~il~sntS~l~-i-~~la~~~~~~~r~ig~hf~~P~~~-----~~l 294 (518)
++||+||.|+|... -.++++++.+. ++++++|++.+|+.. + ..+ .....+|+|.||+..++. ...
T Consensus 50 ~~aDlVilavPv~~--~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HPMaG~E~s~lf~g~~ 124 (370)
T PRK08818 50 QRADVLIFSAPIRH--TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHPMTAPPKSPTLKGRV 124 (370)
T ss_pred cCCCEEEEeCCHHH--HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCCCCCCCCCcccCCCe
Confidence 89999999999764 45888888775 689999999888762 2 333 223347999999986653 233
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCcEEEeC-Ccccchhhhh
Q 010109 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRM 336 (518)
Q Consensus 295 veiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~-d~~Gfi~nri 336 (518)
+.+++. ...+.++.+.++++.+|..++.+. +.+..++..+
T Consensus 125 ~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~aeeHD~~~A~v 165 (370)
T PRK08818 125 MVVCEA--RLQHWSPWVQSLCSALQAECVYATPEHHDRVMALV 165 (370)
T ss_pred EEEeCC--CchhHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHH
Confidence 445554 345557889999999999998886 3444444433
No 74
>PLN02600 enoyl-CoA hydratase
Probab=99.24 E-value=3e-11 Score=118.34 Aligned_cols=96 Identities=21% Similarity=0.317 Sum_probs=85.8
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|++||++++|+||+++||||+|||++++++++.++|++++..+ |
T Consensus 152 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~-p----------------------------------- 195 (251)
T PLN02600 152 LIFTGRRIGAREAASMGLVNYCVPAGEAYEKALELAQEINQKG-P----------------------------------- 195 (251)
T ss_pred HHHhCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|+.++.....+++++++.|.+.|..++.++++++++++|++||+++
T Consensus 196 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~ 247 (251)
T PLN02600 196 LAIKMAKKAINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPV 247 (251)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCC
Confidence 1445688888887778899999999999999999999999999999988754
No 75
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=99.24 E-value=3.3e-11 Score=118.33 Aligned_cols=97 Identities=19% Similarity=0.240 Sum_probs=85.7
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.+.|.++|++++..+ |
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 199 (255)
T PRK08150 156 MMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNA-P----------------------------------- 199 (255)
T ss_pred HHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~k 133 (518)
.+...+|+.++.....++++++..|.+.+..++.|+++++++.+|+++|+++.
T Consensus 200 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~ 252 (255)
T PRK08150 200 LTNFAVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKV 252 (255)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 13446788888877788999999999999999999999999999999887654
No 76
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=99.23 E-value=1.9e-11 Score=123.62 Aligned_cols=126 Identities=21% Similarity=0.399 Sum_probs=95.5
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 010109 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (518)
.+||+|||+|.||+++|..++..|+ +|+++|++++.+.. . .++..... .......++..++|+++++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~-~-----~ld~~~~~------~~~~~~~~I~~~~d~~~l~ 73 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQG-K-----ALDISHSN------VIAGSNSKVIGTNNYEDIA 73 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhH-H-----HHHHHhhh------hccCCCeEEEECCCHHHhC
Confidence 3699999999999999999999996 99999999987532 1 11111110 0111223677778899999
Q ss_pred CCCEEEEec-------------------ccChHhHHHHHHHHhhhCCCC-cEEEEcCCCcchhhhhhhccCc-Cceeecc
Q 010109 226 DVDMVIEAI-------------------IENVSLKQQIFADLEKYCPPH-CILASNTSTIDLNLIGERTYSK-DRIVGAH 284 (518)
Q Consensus 226 ~aDlVIeav-------------------~e~~~~k~~v~~~l~~~~~~~-~il~sntS~l~i~~la~~~~~~-~r~ig~h 284 (518)
+||+||+++ .++..++++++.++.+.+++. .|++||.+.+....+....+.| .|++|++
T Consensus 74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 999999955 567788999999999999774 5678999888777777766665 7898875
No 77
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.23 E-value=1.7e-11 Score=136.65 Aligned_cols=85 Identities=20% Similarity=0.311 Sum_probs=76.6
Q ss_pred ccchhhhhHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---cHHHHhhhcCchhHHHhhhhhhhhCCCCCccccH
Q 010109 329 TGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMI 402 (518)
Q Consensus 329 ~Gfi~nril~~~~~Ea~~l~~~G~--~~~~ID~a~~-~~G~p~---GPf~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~~ 402 (518)
+..|+||++.++++||++++++|+ +|+|||.+++ ++|||+ |||+++|.+|+|+++++++.+. .+++++.|+++
T Consensus 624 ~~~i~nRll~~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~~~~p~~~ 702 (715)
T PRK11730 624 DEEIIARMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGPLYQVPEG 702 (715)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCCCCCCCHH
Confidence 356999999999999999999994 9999999999 999986 9999999999999999999764 57777888999
Q ss_pred HHHHHHCCCCCccCCccce
Q 010109 403 IPIMQEDKRAGETTRKGFY 421 (518)
Q Consensus 403 l~~lv~~G~~G~k~g~GfY 421 (518)
+++|+++| ++||
T Consensus 703 L~~~v~~~-------~~f~ 714 (715)
T PRK11730 703 LREMAANG-------ESYY 714 (715)
T ss_pred HHHHHHcC-------CCCC
Confidence 99999874 6787
No 78
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=99.23 E-value=2.4e-11 Score=121.80 Aligned_cols=97 Identities=14% Similarity=0.087 Sum_probs=85.2
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|++||++++|+||+++||||+|||+++|.++|.+||++++.. |+
T Consensus 173 llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~--~p---------------------------------- 216 (298)
T PRK12478 173 HSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARI--PL---------------------------------- 216 (298)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999875 22
Q ss_pred CcHHHHHHHHHHhhh-CChHHHHHHHHHHHHHHhCCHHHH--------HHHHHHhhhhcCCC
Q 010109 81 THPIVCIDVVEAGVV-SGPRAGLQKEAEDFQKLLRSETCK--------SLVHIFFAQRGTSK 133 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~-~~~~~~l~~E~~~f~~l~~s~~a~--------~~i~aF~~kr~~~k 133 (518)
.+...+|++++.+.. .+++++++.|...+..++.|++++ +++.+|++||++..
T Consensus 217 ~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f 278 (298)
T PRK12478 217 SQLQAQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPF 278 (298)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 144567888888766 469999999999999999999998 59999999998764
No 79
>PLN02888 enoyl-CoA hydratase
Probab=99.23 E-value=4.1e-11 Score=118.32 Aligned_cols=99 Identities=25% Similarity=0.309 Sum_probs=86.9
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.+.|.++|++++..+ |
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 206 (265)
T PLN02888 163 VSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNN-Q----------------------------------- 206 (265)
T ss_pred HHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHh--CCHHHHHHHHHHhhhhcCCCCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLL--RSETCKSLVHIFFAQRGTSKVP 135 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~--~s~~a~~~i~aF~~kr~~~k~~ 135 (518)
.+...+|++++.....++++++..|.+.+..++ .++++++++.+|++||+++|.|
T Consensus 207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~ 263 (265)
T PLN02888 207 GMVLRYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKKPS 263 (265)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCC
Confidence 245578888888877889999999999888886 5999999999999999888754
No 80
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.23 E-value=2.2e-11 Score=115.69 Aligned_cols=97 Identities=24% Similarity=0.269 Sum_probs=87.4
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|++||++++|+||+++||||+|||.++++..|..|+++++.++ |
T Consensus 191 ~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~-~----------------------------------- 234 (290)
T KOG1680|consen 191 MILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNS-P----------------------------------- 234 (290)
T ss_pred HHHhcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999873 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~k 133 (518)
....+.|+.++.+.+.+..+++..|+..|...+.+++.++++.+|.++|.++.
T Consensus 235 ~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~ 287 (290)
T KOG1680|consen 235 LVVRADKESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKF 287 (290)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCccc
Confidence 14447889999999999999999999999999999999999999988776653
No 81
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=99.22 E-value=4.8e-11 Score=117.61 Aligned_cols=96 Identities=32% Similarity=0.315 Sum_probs=85.2
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.++|.+++++++.. |+
T Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~--~~---------------------------------- 205 (261)
T PRK08138 162 MALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARM--PP---------------------------------- 205 (261)
T ss_pred HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999998764 21
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.++..+|++++.....++++++..|.+.|..++.|+++++++++|+++|+++
T Consensus 206 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~ 257 (261)
T PRK08138 206 LALAQIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPA 257 (261)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence 2455788888888778899999999999999999999999999999987754
No 82
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=99.22 E-value=4e-11 Score=117.94 Aligned_cols=96 Identities=24% Similarity=0.276 Sum_probs=85.9
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|+|+++++++|.+++++++..+ |
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 201 (257)
T PRK05862 158 LCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFS-L----------------------------------- 201 (257)
T ss_pred HHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999987752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
+++..+|++++.....+++++++.|.+.|..++.|+++++++++|+++|+++
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~ 253 (257)
T PRK05862 202 PAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPV 253 (257)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence 2555788999888778999999999999999999999999999999988654
No 83
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=99.21 E-value=5e-11 Score=117.32 Aligned_cols=96 Identities=31% Similarity=0.484 Sum_probs=85.2
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.+.|.+++++++..+ |
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 201 (257)
T PRK07658 158 MMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKS-P----------------------------------- 201 (257)
T ss_pred HHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|++++.+...+++++++.|.+.|..++.|+++++++.+|++||+++
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~ 253 (257)
T PRK07658 202 ATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPS 253 (257)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence 2455788888887777899999999999999999999999999999987654
No 84
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=99.21 E-value=4.7e-11 Score=117.42 Aligned_cols=96 Identities=19% Similarity=0.225 Sum_probs=85.5
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.+.|.++|++++..+ |
T Consensus 157 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 200 (256)
T TIGR02280 157 LAMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQP-T----------------------------------- 200 (256)
T ss_pred HHHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|+.++.....+++++++.|.+.+..++.|+++++++.+|+++|+++
T Consensus 201 ~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 252 (256)
T TIGR02280 201 RGLALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQ 252 (256)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCC
Confidence 1445688888888778899999999999999999999999999999987765
No 85
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=99.21 E-value=4.2e-11 Score=118.03 Aligned_cols=96 Identities=27% Similarity=0.422 Sum_probs=85.4
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.++|.+++++++..+ |
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 207 (260)
T PRK05980 164 LLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHS-P----------------------------------- 207 (260)
T ss_pred HHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999988752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.++..+|++++.....+++++++.|.+.+..++.++++++++.+|++||+++
T Consensus 208 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~ 259 (260)
T PRK05980 208 VAVAAILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRPA 259 (260)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence 1455678888888778899999999999999999999999999999988653
No 86
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.20 E-value=4e-10 Score=127.29 Aligned_cols=156 Identities=19% Similarity=0.227 Sum_probs=116.8
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 010109 147 VKKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (518)
++||+|||+|.||.+++..+.++| ++|++||++++.++.+. +.|... ...++. +.
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~ 60 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV-----------SLGVID-----------RGEEDLAEA 60 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH-----------HCCCCC-----------cccCCHHHH
Confidence 579999999999999999999999 48999999998766532 223211 012233 34
Q ss_pred ccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCc--chhhhhhhcc-CcCceeecccccccC----------
Q 010109 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTY-SKDRIVGAHFFSPAH---------- 290 (518)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l--~i~~la~~~~-~~~r~ig~hf~~P~~---------- 290 (518)
+.++|+||.|+|.+ ...++++++.+.++++++|.+.+|+. .+..+.+.+. .+.||++.||+....
T Consensus 61 ~~~aDvVilavp~~--~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~ 138 (735)
T PRK14806 61 VSGADVIVLAVPVL--AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANAD 138 (735)
T ss_pred hcCCCEEEECCCHH--HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhH
Confidence 78999999999865 46788899998888888776555432 2556655543 357899999975221
Q ss_pred --CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCcEEEeC
Q 010109 291 --VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (518)
Q Consensus 291 --~~~lveiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (518)
..+.+.++++..++++..+.+.++++.+|..++++.
T Consensus 139 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~ 176 (735)
T PRK14806 139 LFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMD 176 (735)
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 234567788888899999999999999999888886
No 87
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.20 E-value=2.9e-10 Score=109.16 Aligned_cols=163 Identities=18% Similarity=0.163 Sum_probs=107.6
Q ss_pred eEEEEEe-CCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 010109 148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (518)
Q Consensus 148 ~kV~VIG-aG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (518)
|||+||| +|.||+.++..|+++|++|++++++++.++......... ....| +. ..+..+++.+.+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~---~~~~g-~~--------~~~~~~~~~ea~~~ 68 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEE---LGHGG-SD--------IKVTGADNAEAAKR 68 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhh---ccccC-CC--------ceEEEeChHHHHhc
Confidence 4899997 899999999999999999999999998876543211110 00011 00 01222334466889
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcch-----------------hhhhhhccCcCceeeccccccc
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-----------------NLIGERTYSKDRIVGAHFFSPA 289 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i-----------------~~la~~~~~~~r~ig~hf~~P~ 289 (518)
+|+||.|+|... -.+++.++...++. ++++|.+.++++ +.+++.++...+++....+.|.
T Consensus 69 aDvVilavp~~~--~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a 145 (219)
T TIGR01915 69 ADVVILAVPWDH--VLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSA 145 (219)
T ss_pred CCEEEEECCHHH--HHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCH
Confidence 999999998653 35667777666654 778787777765 2345555332577776444332
Q ss_pred CC-------CCeEEEEeCCCCcHHHHHHHHHHHHhc-CCcEEEeCC
Q 010109 290 HV-------MPLLEIVRTNQTSPQVIVDLLDIGKKI-KKTPIVVGN 327 (518)
Q Consensus 290 ~~-------~~lveiv~g~~t~~e~~~~~~~l~~~l-Gk~~v~v~d 327 (518)
.. .+.-..+.|+ +++..+.+..+.+.+ |..|+.++.
T Consensus 146 ~~~~~~~~~~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G~ 189 (219)
T TIGR01915 146 VLLQDVDDEVDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDAGP 189 (219)
T ss_pred HHhcCCCCCCCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccCCc
Confidence 21 1222345664 567888899999999 999988774
No 88
>PRK08139 enoyl-CoA hydratase; Validated
Probab=99.20 E-value=5.6e-11 Score=117.45 Aligned_cols=96 Identities=17% Similarity=0.204 Sum_probs=85.5
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.+.+.+++++++..+ |
T Consensus 167 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 210 (266)
T PRK08139 167 MLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKS-P----------------------------------- 210 (266)
T ss_pred HHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|++++.....++++++..|.+.+..++.++++++++.+|++||+++
T Consensus 211 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 262 (266)
T PRK08139 211 AAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPE 262 (266)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 1444688899888888899999999999999999999999999999887654
No 89
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=99.20 E-value=4.1e-11 Score=117.20 Aligned_cols=95 Identities=17% Similarity=0.136 Sum_probs=83.8
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++++.|.+++++++..+ |
T Consensus 155 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 198 (249)
T PRK07938 155 LFFTAATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKD-T----------------------------------- 198 (249)
T ss_pred HHHhCCcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT 131 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~ 131 (518)
.+...+|+.++.....+++++++.|...+..++.++++++++.+|++||++
T Consensus 199 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p 249 (249)
T PRK07938 199 RVIRAAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA 249 (249)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence 144467888888777788999999999999999999999999999998753
No 90
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=99.20 E-value=5.9e-11 Score=118.01 Aligned_cols=97 Identities=16% Similarity=0.246 Sum_probs=86.1
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.+.|.++|++++..+ |
T Consensus 178 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 221 (277)
T PRK08258 178 LLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGP-T----------------------------------- 221 (277)
T ss_pred HHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~k 133 (518)
.+...+|++++.....+++++++.|.+.+..++.|+++++++.+|++||+++.
T Consensus 222 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~ 274 (277)
T PRK08258 222 FAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVF 274 (277)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 14446788888887788999999999999999999999999999999887653
No 91
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.20 E-value=2.9e-10 Score=116.00 Aligned_cols=162 Identities=15% Similarity=0.130 Sum_probs=98.5
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (518)
.+||+|||+|.||.+||..|+++|++|++|+++++..+..... . ..+..-+. .....++..+++. +.++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~-~-------~~~~~~~g--~~~~~~~~~~~~~~e~~~ 73 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAE-R-------ENREYLPG--VALPAELYPTADPEEALA 73 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh-C-------cccccCCC--CcCCCCeEEeCCHHHHHc
Confidence 4689999999999999999999999999999998876653321 0 00000000 0011123344455 4478
Q ss_pred CCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcc-----hhhhhhhccC----cCceeecccccccC---CCC
Q 010109 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-----LNLIGERTYS----KDRIVGAHFFSPAH---VMP 293 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~-----i~~la~~~~~----~~r~ig~hf~~P~~---~~~ 293 (518)
+||+||.|+|+.. + ++++ +.+++++++++.+.++. ...+++.+.. ...+++ -|..+.. ..+
T Consensus 74 ~aD~Vi~~v~~~~-~-~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~-gP~~a~~~~~~~~ 146 (328)
T PRK14618 74 GADFAVVAVPSKA-L-RETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLS-GPNHAEEIARFLP 146 (328)
T ss_pred CCCEEEEECchHH-H-HHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEE-CccHHHHHHcCCC
Confidence 9999999999873 2 3444 44567777776666554 3344444321 111111 1111111 113
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCcEEEeCC
Q 010109 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (518)
Q Consensus 294 lveiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (518)
.+.++.+ .+++.++.+++++...|..+.+..|
T Consensus 147 ~~~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~d 178 (328)
T PRK14618 147 AATVVAS--PEPGLARRVQAAFSGPSFRVYTSRD 178 (328)
T ss_pred eEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCC
Confidence 3344444 3788899999999999987775444
No 92
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.19 E-value=1.6e-10 Score=116.86 Aligned_cols=141 Identities=17% Similarity=0.193 Sum_probs=94.5
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (518)
+||+|||+|.||.+||..|+.+||+|++|+++++. + ..+.++++
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~---------------------~---------------~~~~~~~a 48 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGL---------------------S---------------LAAVLADA 48 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCC---------------------C---------------HHHHHhcC
Confidence 58999999999999999999999999999998530 0 01335789
Q ss_pred CEEEEecccChHhHHHHHHHHhhh-CCCCcEEEEcCCCcchhhhh---hhcc---CcCceeecccccccC------CCCe
Q 010109 228 DMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTIDLNLIG---ERTY---SKDRIVGAHFFSPAH------VMPL 294 (518)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~-~~~~~il~sntS~l~i~~la---~~~~---~~~r~ig~hf~~P~~------~~~l 294 (518)
|+||.++|.. ..+.++.++..+ +++++++++.+.++++.... +.+. ...+++. +..|.. ..+.
T Consensus 49 dvvi~~vp~~--~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~--i~gp~~a~ei~~~~~~ 124 (308)
T PRK14619 49 DVIVSAVSMK--GVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVV--LSGPNLSKEIQQGLPA 124 (308)
T ss_pred CEEEEECChH--HHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEE--EECCCcHHHHhcCCCe
Confidence 9999999974 456788888764 67888888877656544211 1110 0111210 112211 1123
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCcEEEeCCccc
Q 010109 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (518)
Q Consensus 295 veiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G 330 (518)
..++.+ .+.+..+.+++++...|..++..+|..|
T Consensus 125 ~~~~ag--~~~~~~~~v~~ll~~~~~~~~~~~d~~G 158 (308)
T PRK14619 125 ATVVAS--RDLAAAETVQQIFSSERFRVYTNSDPLG 158 (308)
T ss_pred EEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCchh
Confidence 333444 3688899999999999988886666433
No 93
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.19 E-value=3.8e-11 Score=133.67 Aligned_cols=85 Identities=21% Similarity=0.349 Sum_probs=76.9
Q ss_pred ccchhhhhHHHHHHHHHHHHHcC-C-CHHHHHHHHH-hcCCCc---cHHHHhhhcCchhHHHhhhhhhhhCCCCCccccH
Q 010109 329 TGFAVNRMFFPYTQAAFLLVERG-T-DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMI 402 (518)
Q Consensus 329 ~Gfi~nril~~~~~Ea~~l~~~G-~-~~~~ID~a~~-~~G~p~---GPf~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~~ 402 (518)
...|+||++.+++||+++++++| + +++|||.+++ |+|||+ |||+++|.+|+|.+.++++.+. .+++++.|+++
T Consensus 624 ~~~i~~Rll~~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~-~~g~~~~p~~~ 702 (714)
T TIGR02437 624 DEEIIARMMIPMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYA-ELGALYQVTAK 702 (714)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHH-HhCCCCCCCHH
Confidence 35699999999999999999999 4 9999999999 999997 9999999999999999999654 78888889999
Q ss_pred HHHHHHCCCCCccCCccce
Q 010109 403 IPIMQEDKRAGETTRKGFY 421 (518)
Q Consensus 403 l~~lv~~G~~G~k~g~GfY 421 (518)
+.+|+++| +.||
T Consensus 703 l~~~~~~g-------~~f~ 714 (714)
T TIGR02437 703 LREMAKNG-------QSFY 714 (714)
T ss_pred HHHHHHcC-------CCCC
Confidence 99999875 6686
No 94
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=99.19 E-value=3.9e-11 Score=120.80 Aligned_cols=122 Identities=22% Similarity=0.363 Sum_probs=90.1
Q ss_pred EEEEeCCcchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCC
Q 010109 150 VAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (518)
Q Consensus 150 V~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 228 (518)
|+|||+|.||.++|..++..|+ +|+++|++++.++ +... ...+ .. .......+++.+++++++++||
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~-g~~~--dl~~-~~--------~~~~~~~~I~~t~d~~~l~dAD 68 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQ-GKAL--DISQ-AA--------PILGSDTKVTGTNDYEDIAGSD 68 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHH-HHHH--HHHH-hh--------hhcCCCeEEEEcCCHHHhCCCC
Confidence 6899999999999999999887 9999999987543 2211 1110 00 0111124677677888999999
Q ss_pred EEEEec--------------ccChHhHHHHHHHHhhhCCCCc-EEEEcCCCcchhhhhhhccC-cCceeec
Q 010109 229 MVIEAI--------------IENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLIGERTYS-KDRIVGA 283 (518)
Q Consensus 229 lVIeav--------------~e~~~~k~~v~~~l~~~~~~~~-il~sntS~l~i~~la~~~~~-~~r~ig~ 283 (518)
+||+++ +++..+++++++++.+.++++. |++||.+.+....+....+. |.|++|+
T Consensus 69 iVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl 139 (300)
T cd01339 69 VVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM 139 (300)
T ss_pred EEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence 999866 7788999999999999998777 46788877766666665554 5678775
No 95
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=99.18 E-value=8.3e-11 Score=116.11 Aligned_cols=96 Identities=19% Similarity=0.206 Sum_probs=85.1
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||+++++++|.+++++++..+ |
T Consensus 164 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~-~----------------------------------- 207 (263)
T PRK07799 164 LLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANG-P----------------------------------- 207 (263)
T ss_pred HHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcC-h-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|+.++.....+++++++.|.+.+..++.++++++++++|+++|+++
T Consensus 208 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~ 259 (263)
T PRK07799 208 LAVQAILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPN 259 (263)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCC
Confidence 1445788888887778899999999999999999999999999999887654
No 96
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=99.18 E-value=8.2e-11 Score=115.97 Aligned_cols=96 Identities=27% Similarity=0.440 Sum_probs=85.8
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|++|+++||||+|+|++++.+.|.+++++++..+ |
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 204 (260)
T PRK05809 161 LIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANA-P----------------------------------- 204 (260)
T ss_pred HHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|+.++.+...+++++++.|.+.+..++.++++++++++|+++|+++
T Consensus 205 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~ 256 (260)
T PRK05809 205 IAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKN 256 (260)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence 2455788888888778899999999999999999999999999999988754
No 97
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=99.18 E-value=8.7e-11 Score=115.93 Aligned_cols=96 Identities=21% Similarity=0.212 Sum_probs=85.0
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.+.|.++|++++..+ |
T Consensus 163 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~-~----------------------------------- 206 (262)
T PRK08140 163 LALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQP-T----------------------------------- 206 (262)
T ss_pred HHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|+.++.....+++++++.|...+..++.++++++++.+|+++|++.
T Consensus 207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~ 258 (262)
T PRK08140 207 RGLALIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPR 258 (262)
T ss_pred HHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 1444678888887778899999999999999999999999999999987654
No 98
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=99.18 E-value=7.8e-11 Score=115.73 Aligned_cols=94 Identities=15% Similarity=0.198 Sum_probs=83.8
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.+.|.+++++++..+ |
T Consensus 163 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 206 (256)
T PRK06143 163 LLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCG-P----------------------------------- 206 (256)
T ss_pred HHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhc
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~ 130 (518)
.+...+|+.++.....++++++..|.+.+..++.++++++++++|++||+
T Consensus 207 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~ 256 (256)
T PRK06143 207 QALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR 256 (256)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence 14446788888877788999999999999999999999999999998864
No 99
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=99.17 E-value=7.2e-11 Score=117.25 Aligned_cols=100 Identities=19% Similarity=0.184 Sum_probs=87.7
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.+.|.+++++++..+ |
T Consensus 172 llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 215 (278)
T PLN03214 172 LLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLP-S----------------------------------- 215 (278)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCCCCCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPG 136 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~k~~~ 136 (518)
.+...+|++++.....+++++++.|.+.+..++.|+++++++.+|++|.+.||...
T Consensus 216 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~~~ 271 (278)
T PLN03214 216 AARAATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKEKK 271 (278)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 14446788888877778999999999999999999999999999999988877543
No 100
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=99.17 E-value=8.6e-11 Score=115.59 Aligned_cols=96 Identities=25% Similarity=0.323 Sum_probs=85.3
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|++|+++||||+|||++++.+.|.+++++++..+ |
T Consensus 158 lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~-~----------------------------------- 201 (257)
T PRK06495 158 MMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKS-P----------------------------------- 201 (257)
T ss_pred HHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|+.++.....+++++++.|.+.+..++.|++.++++.+|+++|+++
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~ 253 (257)
T PRK06495 202 LATRLAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPV 253 (257)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCC
Confidence 1444678888887778899999999999999999999999999999988765
No 101
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=99.17 E-value=1.1e-10 Score=115.57 Aligned_cols=96 Identities=18% Similarity=0.228 Sum_probs=84.9
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.++|.++|++++..+ |
T Consensus 170 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 213 (269)
T PRK06127 170 LFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNA-P----------------------------------- 213 (269)
T ss_pred HHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|+.++.....++++.++.|...+..++.|+++++++.+|++||.++
T Consensus 214 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~ 265 (269)
T PRK06127 214 LTLRAAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPV 265 (269)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCC
Confidence 1444678888887777899999999999999999999999999999988654
No 102
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=99.16 E-value=1.2e-10 Score=114.64 Aligned_cols=96 Identities=25% Similarity=0.359 Sum_probs=84.9
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++++.|.+++++++..+ |
T Consensus 159 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 202 (258)
T PRK09076 159 MILCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQS-P----------------------------------- 202 (258)
T ss_pred HHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|++++.....++++.+..|.+.|..++.++++++++.+|+++|+++
T Consensus 203 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~ 254 (258)
T PRK09076 203 SAVAACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQ 254 (258)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 2445678888887777899999999999999999999999999999987654
No 103
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=99.16 E-value=1.2e-10 Score=114.36 Aligned_cols=96 Identities=25% Similarity=0.340 Sum_probs=85.2
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.+.|.+++++++..+ |
T Consensus 156 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~-~----------------------------------- 199 (255)
T PRK09674 156 MVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHS-P----------------------------------- 199 (255)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|+.++.....+++++++.|.+.+..++.++++++++.+|+++|+++
T Consensus 200 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~ 251 (255)
T PRK09674 200 LALRAAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPD 251 (255)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCC
Confidence 1445678888888778899999999999999999999999999999987654
No 104
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=99.16 E-value=1.1e-10 Score=114.80 Aligned_cols=96 Identities=27% Similarity=0.354 Sum_probs=84.7
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.+.|.+++++++..+ |
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 199 (255)
T PRK06563 156 YLLTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAA-P----------------------------------- 199 (255)
T ss_pred HHHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|+.++.....++.++++.|...+..++.++++++++.+|+++|++.
T Consensus 200 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 251 (255)
T PRK06563 200 LGVQATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPAR 251 (255)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 1444678888887777899999999999999999999999999999988754
No 105
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=99.16 E-value=1.1e-10 Score=114.67 Aligned_cols=96 Identities=22% Similarity=0.251 Sum_probs=84.4
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++++.|.+++++++..+ |
T Consensus 155 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 198 (254)
T PRK08252 155 LALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANG-P----------------------------------- 198 (254)
T ss_pred HHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|++++.+...++++.++.|.+.+..++.++++++++.+|++||+++
T Consensus 199 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~ 250 (254)
T PRK08252 199 LAVAASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPV 250 (254)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 1444678888887777899999999999999999999999999999876654
No 106
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=99.15 E-value=1.2e-10 Score=115.29 Aligned_cols=96 Identities=21% Similarity=0.182 Sum_probs=84.8
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.+.+.+++++++.. |+
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~--~~---------------------------------- 210 (266)
T PRK05981 167 LSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANG--PT---------------------------------- 210 (266)
T ss_pred HHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcC--CH----------------------------------
Confidence 578999999999999999999999999999999999999775 21
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|++++.....+++++++.|...+..++.|+++++++.+|++||+++
T Consensus 211 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~ 262 (266)
T PRK05981 211 VALGLIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQ 262 (266)
T ss_pred HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 1444678888887778899999999999999999999999999999988764
No 107
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=99.14 E-value=1.7e-10 Score=113.65 Aligned_cols=96 Identities=21% Similarity=0.310 Sum_probs=85.2
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++++.|.+++++++..+ |
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 204 (260)
T PRK07657 161 LIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNG-P----------------------------------- 204 (260)
T ss_pred HHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|+.++.....++++++..|.+.+..++.|+++++++.+|+++|+++
T Consensus 205 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~ 256 (260)
T PRK07657 205 IAVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPM 256 (260)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCC
Confidence 1455788888887777899999999999999999999999999999987654
No 108
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=99.14 E-value=1.7e-10 Score=113.90 Aligned_cols=96 Identities=20% Similarity=0.252 Sum_probs=83.2
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|++|+++||||+|||++++.+.+.+++++++..+ |
T Consensus 163 lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~-~----------------------------------- 206 (262)
T PRK07468 163 VFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCA-P----------------------------------- 206 (262)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|++++.......++.++.|...+..++.|+++++++.+|+++|+++
T Consensus 207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~ 258 (262)
T PRK07468 207 GAVAAAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPA 258 (262)
T ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCC
Confidence 1444678888776555678899999999999999999999999999988764
No 109
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=99.14 E-value=1.4e-10 Score=114.28 Aligned_cols=96 Identities=21% Similarity=0.330 Sum_probs=84.7
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.++|.+++++++..+ |
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~-~----------------------------------- 205 (260)
T PRK07511 162 LLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGS-P----------------------------------- 205 (260)
T ss_pred HHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999987752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|+.++.+...++++++..|.+.|..++.++++++++++|+++|+++
T Consensus 206 ~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~ 257 (260)
T PRK07511 206 NALARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPD 257 (260)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCC
Confidence 1444678888888778899999999999999999999999999999987653
No 110
>PRK06223 malate dehydrogenase; Reviewed
Probab=99.14 E-value=1.3e-10 Score=117.43 Aligned_cols=125 Identities=23% Similarity=0.332 Sum_probs=84.3
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 010109 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (518)
|+||+|||+|.||.++|..++..|+ +|+++|++++.++.....+... .. ......+++.++++++++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~---~~---------~~~~~~~i~~~~d~~~~~ 69 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEA---AP---------VEGFDTKITGTNDYEDIA 69 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhh---hh---------hcCCCcEEEeCCCHHHHC
Confidence 5799999999999999999999876 9999999988754321111111 00 011123566677888899
Q ss_pred CCCEEEEec--------------ccChHhHHHHHHHHhhhCCCCc-EEEEcCCCcchhhhhhhccC-cCceeec
Q 010109 226 DVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLIGERTYS-KDRIVGA 283 (518)
Q Consensus 226 ~aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~-il~sntS~l~i~~la~~~~~-~~r~ig~ 283 (518)
+||+||+++ .++..+++++++++.+.+++.. |++||.+.+-...+....+. |.+++|+
T Consensus 70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~ 143 (307)
T PRK06223 70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM 143 (307)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence 999999987 3566889999999999986653 44566554333233232222 3456654
No 111
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.13 E-value=7.1e-10 Score=113.76 Aligned_cols=167 Identities=12% Similarity=0.115 Sum_probs=106.9
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CC---HHHHHhhhcccccccCcc
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MT---QEKFEKTISLLTGVLDYE 222 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~---~~~~~~~~~~i~~~~~~~ 222 (518)
++||+|||+|.||+.+|..|+++|++|+++|+++. .+... +.|. +. ..+......++..+++.+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELR-----------AHGLTLTDYRGRDVRVPPSAIAFSTDPA 69 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHH-----------hcCceeecCCCcceecccceeEeccChh
Confidence 47899999999999999999999999999999653 22211 1121 00 000000112344455666
Q ss_pred cccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcch-hhhhhhccCcCceeeccccc-----ccCC--CCe
Q 010109 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGAHFFS-----PAHV--MPL 294 (518)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i-~~la~~~~~~~r~ig~hf~~-----P~~~--~~l 294 (518)
.+.++|+||.|++... ..+++.++.+.++++++|++.++++.. ..+...+.....+.|.++++ |-.. ...
T Consensus 70 ~~~~~D~vil~vk~~~--~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~ 147 (341)
T PRK08229 70 ALATADLVLVTVKSAA--TADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTS 147 (341)
T ss_pred hccCCCEEEEEecCcc--hHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCC
Confidence 7889999999998653 467889999999999988888888765 45655554333344445432 2110 000
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCcEEEeCCccc
Q 010109 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (518)
Q Consensus 295 veiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G 330 (518)
-.+.-+. .+.++.+.++++..|....+.+|..+
T Consensus 148 g~l~~~~---~~~~~~~~~~l~~~g~~~~~~~di~~ 180 (341)
T PRK08229 148 GALAIEA---SPALRPFAAAFARAGLPLVTHEDMRA 180 (341)
T ss_pred CceEecC---CchHHHHHHHHHhcCCCceecchhHH
Confidence 0112221 24467888999999988888887544
No 112
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=99.13 E-value=1.9e-10 Score=113.85 Aligned_cols=96 Identities=22% Similarity=0.250 Sum_probs=84.9
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.+.+.+++++++..+ |
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 210 (266)
T PRK09245 167 MAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANP-P----------------------------------- 210 (266)
T ss_pred HHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998862 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|+.++.....++++.+..|.+.+..++.++++++++.+|+++|++.
T Consensus 211 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 262 (266)
T PRK09245 211 HALRLTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPV 262 (266)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCC
Confidence 1444678888887777899999999999999999999999999999987654
No 113
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=99.13 E-value=1.8e-10 Score=113.69 Aligned_cols=96 Identities=20% Similarity=0.235 Sum_probs=84.1
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.+++.++|++++..+ |
T Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 205 (262)
T PRK05995 162 YFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANS-P----------------------------------- 205 (262)
T ss_pred HHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHH-HHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~-l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|+.++.....++++. ++.|...+..++.|+++++++.+|.++|+++
T Consensus 206 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~ 258 (262)
T PRK05995 206 QAVRAGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPA 258 (262)
T ss_pred HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence 144567888888777788888 8999999999999999999999999988764
No 114
>PTZ00117 malate dehydrogenase; Provisional
Probab=99.13 E-value=1.1e-10 Score=118.29 Aligned_cols=125 Identities=23% Similarity=0.394 Sum_probs=92.8
Q ss_pred eEEEEEeCCcchHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (518)
+||+|||+|.||.++|..++..| .+|+++|++++.++ +.. ++.... . .......+++.+++++++++
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~-----lDl~~~----~--~~~~~~~~i~~~~d~~~l~~ 73 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKA-----LDLKHF----S--TLVGSNINILGTNNYEDIKD 73 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHH-----HHHhhh----c--cccCCCeEEEeCCCHHHhCC
Confidence 59999999999999999999999 69999999987754 221 110000 0 00111135666678899999
Q ss_pred CCEEEEec--ccCh------------HhHHHHHHHHhhhCCCC-cEEEEcCCCcchhhhhhhccCc-Cceeecc
Q 010109 227 VDMVIEAI--IENV------------SLKQQIFADLEKYCPPH-CILASNTSTIDLNLIGERTYSK-DRIVGAH 284 (518)
Q Consensus 227 aDlVIeav--~e~~------------~~k~~v~~~l~~~~~~~-~il~sntS~l~i~~la~~~~~~-~r~ig~h 284 (518)
||+||+++ |+++ .+++++..++.+++++. .|++||.+.+....+....+.| .|++|++
T Consensus 74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 99999999 7766 78899999999998777 5677888877766666665555 7888875
No 115
>PLN02712 arogenate dehydrogenase
Probab=99.13 E-value=8e-10 Score=121.90 Aligned_cols=154 Identities=13% Similarity=0.087 Sum_probs=108.2
Q ss_pred cceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c
Q 010109 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F 224 (518)
Q Consensus 146 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 224 (518)
..+||+|||+|.||.++|..|.+.|++|++||++.+. +.+. +.|. ....+.++ +
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~-----------~~Gv-------------~~~~~~~el~ 422 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQ-----------KLGV-------------SYFSDADDLC 422 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHH-----------HcCC-------------eEeCCHHHHH
Confidence 3479999999999999999999999999999998642 2211 1221 12234433 4
Q ss_pred c-CCCEEEEecccChHhHHHHHHHHhh-hCCCCcEEEEcCCC--cchhhhhhhccCcCceeecccccccCCCC-------
Q 010109 225 K-DVDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSPAHVMP------- 293 (518)
Q Consensus 225 ~-~aDlVIeav~e~~~~k~~v~~~l~~-~~~~~~il~sntS~--l~i~~la~~~~~~~r~ig~hf~~P~~~~~------- 293 (518)
. .||+||.|+|.. .-..++.++.. .++++++|++.+|+ .++..+...++...+|++.||+.+.....
T Consensus 423 ~~~aDvVILavP~~--~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~ 500 (667)
T PLN02712 423 EEHPEVILLCTSIL--STEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLA 500 (667)
T ss_pred hcCCCEEEECCChH--HHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhh
Confidence 3 589999999953 34577777764 57889999988887 45556666555555799999998765431
Q ss_pred -eE--EEEeCCCCcHHHHHHHHHHHHhcCCcEEEeC
Q 010109 294 -LL--EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (518)
Q Consensus 294 -lv--eiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (518)
+. .++.++....+.++.+.+++..+|..++.+.
T Consensus 501 ~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms 536 (667)
T PLN02712 501 FVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMS 536 (667)
T ss_pred hhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeC
Confidence 11 1223444455667777899999999888886
No 116
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=99.13 E-value=1.5e-10 Score=114.89 Aligned_cols=97 Identities=21% Similarity=0.309 Sum_probs=85.0
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|++|+++||||+|||++++.++|.++|++++....|
T Consensus 172 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p----------------------------------- 216 (272)
T PRK06210 172 LLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSP----------------------------------- 216 (272)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCH-----------------------------------
Confidence 578999999999999999999999999999999999999864112
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|++++.....+++++++.|.+.+..++.++++++++.+|++||++.
T Consensus 217 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~ 268 (272)
T PRK06210 217 ASMAVIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPR 268 (272)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence 1445678888888778899999999999999999999999999999988654
No 117
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.12 E-value=7e-10 Score=109.31 Aligned_cols=182 Identities=16% Similarity=0.136 Sum_probs=124.1
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 010109 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (518)
+||+|||+|+||++|+..+.++|. +|+++|++++.. +. ....++.+.
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-----------------~~------------~~~~~~~~~ 54 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-----------------PF------------VYLQSNEEL 54 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-----------------Ce------------EEeCChHHH
Confidence 489999999999999999999873 499999887532 00 011222344
Q ss_pred ccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeE-EEEeCCC
Q 010109 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL-EIVRTNQ 302 (518)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lv-eiv~g~~ 302 (518)
+.+||+||.|++.. .-.+++.++.++++++ +++|..++++++.+...++...+++...|..|......+ -+++...
T Consensus 55 ~~~~D~Vilavkp~--~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~ 131 (260)
T PTZ00431 55 AKTCDIIVLAVKPD--LAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNN 131 (260)
T ss_pred HHhCCEEEEEeCHH--HHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCC
Confidence 67899999999744 4678888988877654 567889999999988877554567777787787665444 4556777
Q ss_pred CcHHHHHHHHHHHHhcCCcEEEeCCc--ccch-hhh---hHHHHHHHHH--HHHHcCCCHHHHHHHHH
Q 010109 303 TSPQVIVDLLDIGKKIKKTPIVVGNC--TGFA-VNR---MFFPYTQAAF--LLVERGTDLYLIDRAIT 362 (518)
Q Consensus 303 t~~e~~~~~~~l~~~lGk~~v~v~d~--~Gfi-~nr---il~~~~~Ea~--~l~~~G~~~~~ID~a~~ 362 (518)
.+++..+.+.+++..+|....+ .+. ..+. +.- -+..++.|++ ..+..|++.++--....
T Consensus 132 ~~~~~~~~v~~l~~~~G~~~~v-~E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~ 198 (260)
T PTZ00431 132 VDSTDKKKVIDIFSACGIIQEI-KEKDMDIATAISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVL 198 (260)
T ss_pred CCHHHHHHHHHHHHhCCcEEEE-ChHHcchhhhhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 7888999999999999987655 321 1110 000 1112233443 23456887777665543
No 118
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=99.12 E-value=1.7e-10 Score=114.48 Aligned_cols=96 Identities=20% Similarity=0.183 Sum_probs=84.1
Q ss_pred CcccCCCCCHHHHHhCCCcceecCC-chHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (518)
|+++|++++|++|+++||||+|||+ +++.+.+.+++++++.. |+
T Consensus 173 l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~--~~--------------------------------- 217 (272)
T PRK06142 173 LALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAK--SP--------------------------------- 217 (272)
T ss_pred HHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhC--CH---------------------------------
Confidence 5789999999999999999999986 88999999999999875 22
Q ss_pred CCcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|+.++.....++++++..|...+..++.|+++++++.+|+++|+++
T Consensus 218 -~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~ 269 (272)
T PRK06142 218 -LAVRGTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPE 269 (272)
T ss_pred -HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCC
Confidence 1444678888887777899999999999999999999999999999988654
No 119
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=99.12 E-value=1.9e-10 Score=113.24 Aligned_cols=96 Identities=24% Similarity=0.322 Sum_probs=83.1
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.+.+.++|++++..+ |
T Consensus 158 lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 201 (259)
T PRK06494 158 MILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACS-P----------------------------------- 201 (259)
T ss_pred HHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHH--HHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKE--AEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E--~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|+.++.....+++++++.| ...+..++.++++++++.+|+++|+++
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~ 255 (259)
T PRK06494 202 LSIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPR 255 (259)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCC
Confidence 1444678888887777899999999 567899999999999999999877653
No 120
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.12 E-value=2.9e-09 Score=107.03 Aligned_cols=202 Identities=18% Similarity=0.259 Sum_probs=131.6
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHhhhcccccccCcc-
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV----RANLQSRVKKGKMTQEKFEKTISLLTGVLDYE- 222 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 222 (518)
|||+|||.|..|...+.+|+..||+|+.+|+++++++...+.. +..|+.+++++..+ +|+++|+|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~--------gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLAS--------GRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcccc--------CcEEEEcCHHH
Confidence 6899999999999999999999999999999999998765443 33455555544322 4689999986
Q ss_pred cccCCCEEEEeccc--------ChHhHHHHHHHHhhhCCCCcEEEEcCCCcchh---hhhhhcc--CcCceeeccccccc
Q 010109 223 SFKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTY--SKDRIVGAHFFSPA 289 (518)
Q Consensus 223 ~~~~aDlVIeav~e--------~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~---~la~~~~--~~~r~ig~hf~~P~ 289 (518)
+++++|++|.||+. |......+.+++.++++..++++ +-||+++. .+...+. .+.+-.++- +||-
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v~-~NPE 150 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEVA-SNPE 150 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccCCceEe-cChH
Confidence 58999999999964 33355677788888888876664 57888774 3322221 111111111 2332
Q ss_pred CC----------CCeEEEEeCCCCcHHHHHHHHHHHHhc--CCcEEEeCCcc-----cchhhhhHH---HHHHHHHHHHH
Q 010109 290 HV----------MPLLEIVRTNQTSPQVIVDLLDIGKKI--KKTPIVVGNCT-----GFAVNRMFF---PYTQAAFLLVE 349 (518)
Q Consensus 290 ~~----------~~lveiv~g~~t~~e~~~~~~~l~~~l--Gk~~v~v~d~~-----Gfi~nril~---~~~~Ea~~l~~ 349 (518)
-. .|-- ||-|.. ++.+.+.+.++++.. ...|+++.+.. .+..|-+|+ .++||...+-+
T Consensus 151 FLREG~Av~D~~~PdR-IViG~~-~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice 228 (414)
T COG1004 151 FLREGSAVYDFLYPDR-IVIGVR-SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICE 228 (414)
T ss_pred HhcCcchhhhccCCCe-EEEccC-ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 1111 333332 223455566666553 56677665421 234566665 57899988876
Q ss_pred -cCCCHHHHHHHH
Q 010109 350 -RGTDLYLIDRAI 361 (518)
Q Consensus 350 -~G~~~~~ID~a~ 361 (518)
-|++.++|-.++
T Consensus 229 ~~g~D~~~V~~gI 241 (414)
T COG1004 229 KVGADVKQVAEGI 241 (414)
T ss_pred HhCCCHHHHHHHc
Confidence 588888887765
No 121
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=99.12 E-value=2.2e-10 Score=113.85 Aligned_cols=96 Identities=24% Similarity=0.208 Sum_probs=84.0
Q ss_pred CcccCCCCCHHHHHhCCCcceecCC-chHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (518)
|++||++++|+||+++||||+|||+ +++.+++.++|++++..+ |
T Consensus 175 l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~-p---------------------------------- 219 (275)
T PLN02664 175 LALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKS-P---------------------------------- 219 (275)
T ss_pred HHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCC-H----------------------------------
Confidence 5789999999999999999999985 889999999999998862 2
Q ss_pred CCcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|++++.....+++++++.|...+..++.|+++++++.+|++||++.
T Consensus 220 -~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~ 271 (275)
T PLN02664 220 -LAVTGTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPV 271 (275)
T ss_pred -HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCC
Confidence 1444678888887777899999999999999999999999999999988654
No 122
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.12 E-value=1.3e-09 Score=107.13 Aligned_cols=148 Identities=19% Similarity=0.196 Sum_probs=98.9
Q ss_pred hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEecccCh
Q 010109 159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENV 238 (518)
Q Consensus 159 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~~ 238 (518)
|++||.+|+++||+|++||+++++++... .+.+.+.|.. ...+..+.+++||+||.|+|...
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~------~e~LaeaGA~------------~AaS~aEAAa~ADVVIL~LPd~a 93 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDL------WKKVEDAGVK------------VVSDDKEAAKHGEIHVLFTPFGK 93 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhh------hHHHHHCCCe------------ecCCHHHHHhCCCEEEEecCCHH
Confidence 88999999999999999999987654211 1112233421 12223466889999999999665
Q ss_pred HhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhcc----CcCceeecccccccC--CCCe--EEEE------eCCCCc
Q 010109 239 SLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTY----SKDRIVGAHFFSPAH--VMPL--LEIV------RTNQTS 304 (518)
Q Consensus 239 ~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~----~~~r~ig~hf~~P~~--~~~l--veiv------~g~~t~ 304 (518)
.+ ++++..+.+.++++++++ ++||+++..+...+. ...+-+|+..|.|.. .++. .-++ ...-.+
T Consensus 94 aV-~eVl~GLaa~L~~GaIVI-D~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A~ 171 (341)
T TIGR01724 94 GT-FSIARTIIEHVPENAVIC-NTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMAT 171 (341)
T ss_pred HH-HHHHHHHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccCC
Confidence 54 456677888899999885 578888775544332 122345555554432 2221 1122 223457
Q ss_pred HHHHHHHHHHHHhcCCcEEEeC
Q 010109 305 PQVIVDLLDIGKKIKKTPIVVG 326 (518)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~v~v~ 326 (518)
++.+++..++.+..|+.+.++.
T Consensus 172 ee~i~~~~el~~~~~~~~~~~p 193 (341)
T TIGR01724 172 EEQISKCVELAKSTGKKAYVVP 193 (341)
T ss_pred HHHHHHHHHHHHHhCCCeeecc
Confidence 8999999999999999999886
No 123
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=99.11 E-value=2.2e-10 Score=112.90 Aligned_cols=96 Identities=25% Similarity=0.363 Sum_probs=84.1
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|++|+++||||+|+|++++.+.|.++|++++..+ |
T Consensus 160 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~-~----------------------------------- 203 (259)
T PRK06688 160 MLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGP-A----------------------------------- 203 (259)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999987752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|+.++.....++++++..|.+.|..++.++++++++++|+++|+++
T Consensus 204 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~ 255 (259)
T PRK06688 204 SALRYTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPD 255 (259)
T ss_pred HHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence 1334577888887778899999999999999999999999999999987654
No 124
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.10 E-value=3.1e-09 Score=98.65 Aligned_cols=153 Identities=20% Similarity=0.217 Sum_probs=104.0
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (518)
|++++|+|+|.||+++|..|+++||+|++-.++ +++++.+.+. ....++..++.++++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~---------------------l~~~i~~~~~~dA~~ 59 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAA---------------------LGPLITGGSNEDAAA 59 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHh---------------------hccccccCChHHHHh
Confidence 579999999999999999999999999999655 4444443221 112355566677889
Q ss_pred CCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCc----------------chh-hhhhhccCcCceeeccccc-
Q 010109 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI----------------DLN-LIGERTYSKDRIVGAHFFS- 287 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l----------------~i~-~la~~~~~~~r~ig~hf~~- 287 (518)
.||+||.+||=. --..+.+++...+. +.|+++.|-.+ +.+ .+++.++++ +++.. |.+
T Consensus 60 ~aDVVvLAVP~~--a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkA-Fn~i 134 (211)
T COG2085 60 LADVVVLAVPFE--AIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKA-FNTI 134 (211)
T ss_pred cCCEEEEeccHH--HHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhh-hccc
Confidence 999999999854 34577888887766 67777655432 112 233344333 34332 322
Q ss_pred --------ccCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCcEEEeCC
Q 010109 288 --------PAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (518)
Q Consensus 288 --------P~~~~~lveiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (518)
+....+....++| .|.++.+.+.++.+.+|..|+-++.
T Consensus 135 ~a~~l~~~~~~~~~~~v~vag--DD~~Ak~~v~~L~~~iG~~~ld~G~ 180 (211)
T COG2085 135 PAAVLADLAKPGGRRDVLVAG--DDAEAKAVVAELAEDIGFRPLDAGP 180 (211)
T ss_pred CHHHhccCCCcCCceeEEEec--CcHHHHHHHHHHHHhcCcceeeccc
Confidence 1111344445566 3788999999999999999999874
No 125
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=99.09 E-value=3e-10 Score=111.50 Aligned_cols=93 Identities=23% Similarity=0.178 Sum_probs=81.3
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.+.|.++|+++++.+ |
T Consensus 157 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 200 (254)
T PRK08259 157 LILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFP-Q----------------------------------- 200 (254)
T ss_pred HHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhc
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~ 130 (518)
.+...+|++++.....++++++..|...+..++. +++++++.+|+++++
T Consensus 201 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~ 249 (254)
T PRK08259 201 TCLRADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAG 249 (254)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhc
Confidence 1444678888887777899999999998888887 999999999998765
No 126
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=99.09 E-value=2.5e-10 Score=112.51 Aligned_cols=96 Identities=20% Similarity=0.276 Sum_probs=82.9
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.+.|.+|+++++..+ |
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 201 (261)
T PRK03580 158 MVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSA-P----------------------------------- 201 (261)
T ss_pred HHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHH----HHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEA----EDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~----~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|+.++.....+++++++.|. ..+..++.++++++++.+|++||+++
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~ 257 (261)
T PRK03580 202 LAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPV 257 (261)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCC
Confidence 13446788888877788999999887 48889999999999999999987654
No 127
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.09 E-value=1.4e-10 Score=124.47 Aligned_cols=96 Identities=9% Similarity=0.020 Sum_probs=87.3
Q ss_pred cccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCCC
Q 010109 2 MLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLT 81 (518)
Q Consensus 2 iltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 81 (518)
+++|++|+|+||+++||||+|||++++++++.++|++++..+ | .
T Consensus 446 ~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~-p-----------------------------------~ 489 (550)
T PRK08184 446 AKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLS-P-----------------------------------D 489 (550)
T ss_pred HHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCC-H-----------------------------------H
Confidence 589999999999999999999999999999999999998863 2 1
Q ss_pred cHHHHHHHHHHhhhCChHHH-HHHHHHHHHHHhCCHHHHH---HHHHHhhhhcCCC
Q 010109 82 HPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKS---LVHIFFAQRGTSK 133 (518)
Q Consensus 82 A~~~~~~~i~~~~~~~~~~~-l~~E~~~f~~l~~s~~a~~---~i~aF~~kr~~~k 133 (518)
|...+|++++.+...+++++ +..|.+.|..++.|+++++ ++.+|++||+++.
T Consensus 490 a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~~~f 545 (550)
T PRK08184 490 ALTGMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTGQKAQF 545 (550)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccCCCCCC
Confidence 45578899999988999999 9999999999999999999 9999999998754
No 128
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=99.09 E-value=2.8e-10 Score=112.17 Aligned_cols=95 Identities=21% Similarity=0.218 Sum_probs=83.7
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|| ++++.++|.+++++++.. |+
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~--~~---------------------------------- 204 (260)
T PRK07659 162 IIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQK--PL---------------------------------- 204 (260)
T ss_pred HHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 57899999999999999999999 788999999999999875 22
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|++++.....+++++++.|.+.+..++.|+++++++.+|++||+++
T Consensus 205 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~ 256 (260)
T PRK07659 205 KAMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPV 256 (260)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCC
Confidence 1444678888887778899999999999999999999999999999988764
No 129
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.09 E-value=1.3e-10 Score=124.42 Aligned_cols=97 Identities=10% Similarity=-0.002 Sum_probs=87.2
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|++||++|+|+||+++|||++|||++++.+++.++|++++..+ |
T Consensus 441 ~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 484 (546)
T TIGR03222 441 RDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFS-P----------------------------------- 484 (546)
T ss_pred HHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 4689999999999999999999999999999999999998863 2
Q ss_pred CcHHHHHHHHHHhhhCChHHH-HHHHHHHHHHHhCCHHHHH---HHHHHhhhhcCCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKS---LVHIFFAQRGTSK 133 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~-l~~E~~~f~~l~~s~~a~~---~i~aF~~kr~~~k 133 (518)
.|...+|++++.+...+++++ +..|++.|..++.|+++++ ++.+|++||++..
T Consensus 485 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~p~f 541 (546)
T TIGR03222 485 DALTGLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSGKKAQF 541 (546)
T ss_pred HHHHHHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccCCCCCC
Confidence 144577889999888999999 9999999999999999999 9999999998753
No 130
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.08 E-value=5.8e-10 Score=110.50 Aligned_cols=166 Identities=17% Similarity=0.231 Sum_probs=109.5
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-ccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 226 (518)
+||+|||+|.||+++|..|+++||+|++|.++++..++.... +.+- +... |.. ....+..++|++. +++
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~-~~N~-~yLp-~i~-------lp~~l~at~Dl~~a~~~ 71 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINET-RENP-KYLP-GIL-------LPPNLKATTDLAEALDG 71 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhc-CcCc-cccC-Ccc-------CCcccccccCHHHHHhc
Confidence 699999999999999999999999999999999988764321 1000 0011 111 2245677888754 677
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcch------hhhhhhccCcCceeeccccc-cc------CCCC
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL------NLIGERTYSKDRIVGAHFFS-PA------HVMP 293 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i------~~la~~~~~~~r~ig~hf~~-P~------~~~~ 293 (518)
||+|+.+||.. .-+++++++...+++++++++.+-++.. +++.+..- |...++ +.+ |- ...|
T Consensus 72 ad~iv~avPs~--~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l-~~~~~~--vLSGPs~A~EVa~g~p 146 (329)
T COG0240 72 ADIIVIAVPSQ--ALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEEL-PDNPIA--VLSGPSFAKEVAQGLP 146 (329)
T ss_pred CCEEEEECChH--HHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHc-CCCeEE--EEECccHHHHHhcCCC
Confidence 99999999976 4678889988888999988887655533 34433221 211122 222 21 2244
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCcEEEeCCccc
Q 010109 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (518)
Q Consensus 294 lveiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G 330 (518)
...++.+ .+++..+.++.+|..--..+....|..|
T Consensus 147 ta~~vas--~d~~~a~~v~~~f~~~~Frvy~~~Dv~G 181 (329)
T COG0240 147 TAVVVAS--NDQEAAEKVQALFSSPYFRVYTSTDVIG 181 (329)
T ss_pred cEEEEec--CCHHHHHHHHHHhCCCcEEEEecCchhh
Confidence 4445555 4777888888888775555555556544
No 131
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=99.07 E-value=3.6e-10 Score=111.59 Aligned_cols=96 Identities=17% Similarity=0.268 Sum_probs=81.9
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+|||++++|+||+++||||+|||+++|.+.+.+++++++..+ |
T Consensus 164 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 207 (265)
T PRK05674 164 YALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNS-P----------------------------------- 207 (265)
T ss_pred HHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHH-HHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQK-EAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~-E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|+.++.....++++++.. |.+.+..++.|+++++++.+|+++|+++
T Consensus 208 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~ 260 (265)
T PRK05674 208 QALRASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPA 260 (265)
T ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCC
Confidence 144467888888877788888765 5568888999999999999999987654
No 132
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=99.07 E-value=4.5e-10 Score=110.41 Aligned_cols=94 Identities=19% Similarity=0.143 Sum_probs=83.8
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|++|+++||||+|||++++.+.+.+++++++..+ |
T Consensus 162 l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 205 (255)
T PRK07260 162 LAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGS-S----------------------------------- 205 (255)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhc
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~ 130 (518)
.+...+|+.++.....++++++..|...+..++.|+++++++.+|.++|+
T Consensus 206 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~ 255 (255)
T PRK07260 206 NSYAAIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR 255 (255)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 14446888888887788999999999999999999999999999998764
No 133
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.05 E-value=8.2e-11 Score=108.43 Aligned_cols=51 Identities=8% Similarity=-0.103 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCccccccccccccccCchhhHHHHHHHHHh
Q 010109 463 LLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELAR 515 (518)
Q Consensus 463 ~i~~r~~~~~~nea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 515 (518)
=|+||+|.|+++||+|+++.|+||.+||| .+|++|.|||||||++.|.+|=
T Consensus 201 FIVNRlLiPyl~ea~r~yerGdAskeDID--taMklGagyPMGPfEL~DyvGL 251 (298)
T KOG2304|consen 201 FIVNRLLIPYLMEAIRMYERGDASKEDID--TAMKLGAGYPMGPFELADYVGL 251 (298)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCcHhhHH--HHHhccCCCCCChHHHHHHhhH
Confidence 49999999999999999999999999999 9999999999999999999984
No 134
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=99.05 E-value=4.2e-10 Score=110.81 Aligned_cols=95 Identities=18% Similarity=0.262 Sum_probs=78.8
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.++|.++|++++..+ |
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 204 (259)
T TIGR01929 161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKS-P----------------------------------- 204 (259)
T ss_pred HHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|++++.... ..+..+..|.+.+..++.|+++++++.+|++||+++
T Consensus 205 ~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~ 255 (259)
T TIGR01929 205 MAIRMLKAALNADCD-GQAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPD 255 (259)
T ss_pred HHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence 134456777776543 245556678889999999999999999999988764
No 135
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.05 E-value=2.9e-10 Score=103.24 Aligned_cols=105 Identities=23% Similarity=0.292 Sum_probs=75.9
Q ss_pred EEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccCC
Q 010109 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKDV 227 (518)
Q Consensus 149 kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~a 227 (518)
||+|||+|.||.++|..|+.+|++|++|.++++.++...+. .......+. ......+..++|++ .++++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~--------~~n~~~~~~--~~l~~~i~~t~dl~~a~~~a 70 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINET--------RQNPKYLPG--IKLPENIKATTDLEEALEDA 70 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHH--------TSETTTSTT--SBEETTEEEESSHHHHHTT-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHh--------CCCCCCCCC--cccCcccccccCHHHHhCcc
Confidence 79999999999999999999999999999999877653321 000010000 11223566778874 58999
Q ss_pred CEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCc
Q 010109 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (518)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (518)
|+||.+||... -+.+++++.+++++++++++.+-++
T Consensus 71 d~IiiavPs~~--~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 71 DIIIIAVPSQA--HREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp SEEEE-S-GGG--HHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cEEEecccHHH--HHHHHHHHhhccCCCCEEEEecCCc
Confidence 99999999874 4799999999999999998887776
No 136
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.05 E-value=2.8e-09 Score=104.85 Aligned_cols=141 Identities=18% Similarity=0.213 Sum_probs=101.3
Q ss_pred HHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEecccChH
Q 010109 162 IATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVS 239 (518)
Q Consensus 162 iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~~~ 239 (518)
||..|.++| ++|+.+|++++.++.+. +.|.++. ...+.+.+++||+||.|+|.+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~-----------~~g~~~~-----------~~~~~~~~~~~DlvvlavP~~-- 56 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAAL-----------ELGIIDE-----------ASTDIEAVEDADLVVLAVPVS-- 56 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHH-----------HTTSSSE-----------EESHHHHGGCCSEEEE-S-HH--
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHH-----------HCCCeee-----------ccCCHhHhcCCCEEEEcCCHH--
Confidence 678888998 79999999999887754 3454431 122256789999999999865
Q ss_pred hHHHHHHHHhhhCCCCcEEEEcCCCc--chhhhhhhccCcCceeecccccccC------------CCCeEEEEeCCCCcH
Q 010109 240 LKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH------------VMPLLEIVRTNQTSP 305 (518)
Q Consensus 240 ~k~~v~~~l~~~~~~~~il~sntS~l--~i~~la~~~~~~~r~ig~hf~~P~~------------~~~lveiv~g~~t~~ 305 (518)
.-.+++.++.+.++++++|++.+|.. .+..+........+|+|.||+..++ ....+.++++..+++
T Consensus 57 ~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~ 136 (258)
T PF02153_consen 57 AIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP 136 (258)
T ss_dssp HHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H
T ss_pred HHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH
Confidence 45689999999999999999988875 3345555555567999999986541 245777889999999
Q ss_pred HHHHHHHHHHHhcCCcEEEeC
Q 010109 306 QVIVDLLDIGKKIKKTPIVVG 326 (518)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~ 326 (518)
+.++.+.++++.+|..++.+.
T Consensus 137 ~~~~~~~~l~~~~Ga~~~~~~ 157 (258)
T PF02153_consen 137 EALELVEELWEALGARVVEMD 157 (258)
T ss_dssp HHHHHHHHHHHHCT-EEEE--
T ss_pred HHHHHHHHHHHHCCCEEEEcC
Confidence 999999999999999988875
No 137
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=99.04 E-value=6.7e-10 Score=110.19 Aligned_cols=96 Identities=17% Similarity=0.232 Sum_probs=79.1
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.+.+.++|++++..+ |
T Consensus 171 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 214 (273)
T PRK07396 171 IWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNS-P----------------------------------- 214 (273)
T ss_pred HHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~k 133 (518)
.+...+|+.++.... ..+...+.|.+.+..++.|+++++++.+|++||++..
T Consensus 215 ~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~ 266 (273)
T PRK07396 215 MALRCLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPDF 266 (273)
T ss_pred HHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCCC
Confidence 134467777776543 3455556788899999999999999999999887653
No 138
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=99.03 E-value=7.6e-10 Score=109.08 Aligned_cols=96 Identities=19% Similarity=0.215 Sum_probs=80.5
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.+.|.+++++++..+ |
T Consensus 160 l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 203 (261)
T PRK11423 160 MFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKA-P----------------------------------- 203 (261)
T ss_pred HHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhh-CCh-HHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVV-SGP-RAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~-~~~-~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|+.++.... .+. +..++.|.+.+..++.|+++++++.+|++||+++
T Consensus 204 ~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~ 257 (261)
T PRK11423 204 LAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPV 257 (261)
T ss_pred HHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCC
Confidence 134467888876543 333 5788889999999999999999999999988764
No 139
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.03 E-value=2.8e-08 Score=99.62 Aligned_cols=201 Identities=19% Similarity=0.258 Sum_probs=129.3
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH---H-----HHHHHHHHHcCCCCHHHHHhhhccccccc
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR---V-----RANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~---i-----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (518)
.+|+|||+|.+|-.+|..|+++|++|+.+|+|+.+.+..... | ...+...++. ++++.|+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~------------g~lraTt 77 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVES------------GKLRATT 77 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhc------------CCceEec
Confidence 799999999999999999999999999999999988764321 1 1112223333 4677899
Q ss_pred CcccccCCCEEEEeccc--------ChHhHHHHHHHHhhhCCCCcEEEEcCCCcc--hhhhhhhcc--CcCceeeccc--
Q 010109 220 DYESFKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTY--SKDRIVGAHF-- 285 (518)
Q Consensus 220 ~~~~~~~aDlVIeav~e--------~~~~k~~v~~~l~~~~~~~~il~sntS~l~--i~~la~~~~--~~~r~ig~hf-- 285 (518)
+.+.++.||++|.|||. |+....+..+.|.+.+.++.+++--+++.+ .+++...+- ++.-..+--|
T Consensus 78 d~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l 157 (436)
T COG0677 78 DPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL 157 (436)
T ss_pred ChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence 99999999999999974 334445666779999999987654332222 233332221 1111112222
Q ss_pred -ccccCCCC---eEE------EEeCCCCcHHHHHHHHHHHHhcCCcEEEeCCc-ccc---hhh----hhHHHHHHHHHHH
Q 010109 286 -FSPAHVMP---LLE------IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVN----RMFFPYTQAAFLL 347 (518)
Q Consensus 286 -~~P~~~~~---lve------iv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~Gf---i~n----ril~~~~~Ea~~l 347 (518)
++|-..+| +.| |+.| .+++..+.+..+.+.+=+..+.+.+. ... +.. -+-.++.||-..+
T Consensus 158 aysPERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali 235 (436)
T COG0677 158 AYSPERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALI 235 (436)
T ss_pred eeCccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 24544332 222 5555 57888899999998876556666542 121 222 2345788998776
Q ss_pred HH-cCCCHHH-HHHHHH
Q 010109 348 VE-RGTDLYL-IDRAIT 362 (518)
Q Consensus 348 ~~-~G~~~~~-ID~a~~ 362 (518)
.+ .|++..+ |+.|-+
T Consensus 236 ~~~~GIdvwevIeaAnt 252 (436)
T COG0677 236 CNAMGIDVWEVIEAANT 252 (436)
T ss_pred HHHhCCcHHHHHHHhcc
Confidence 64 6997666 555544
No 140
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=99.02 E-value=9.7e-10 Score=109.25 Aligned_cols=96 Identities=23% Similarity=0.196 Sum_probs=78.5
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.++|.++|++++..+ |
T Consensus 174 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 217 (276)
T PRK05864 174 IMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFS-R----------------------------------- 217 (276)
T ss_pred HHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhC-ChHHHHHHHHHHHH-HHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVS-GPRAGLQKEAEDFQ-KLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~-~~~~~l~~E~~~f~-~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|++++..... ++++.+..|..... .++.|+++++++.+|++||+++
T Consensus 218 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~ 271 (276)
T PRK05864 218 PGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPV 271 (276)
T ss_pred HHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCC
Confidence 1444678888776554 68888888875432 3578999999999999987654
No 141
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=99.02 E-value=9.5e-10 Score=109.17 Aligned_cols=94 Identities=19% Similarity=0.193 Sum_probs=81.0
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||+++|.+.|.+++++++..+ |
T Consensus 168 llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 211 (275)
T PRK09120 168 YIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKN-P----------------------------------- 211 (275)
T ss_pred HHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHH--HHHHHhCCH-HHHHHHHHHhhhhc
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAE--DFQKLLRSE-TCKSLVHIFFAQRG 130 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~--~f~~l~~s~-~a~~~i~aF~~kr~ 130 (518)
.+...+|+.++.....+++++++.|.. .+..++.++ ++++++.+|+++|.
T Consensus 212 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~ 264 (275)
T PRK09120 212 VVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKS 264 (275)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhccc
Confidence 144578889988888889999888764 456678898 89999999999887
No 142
>PLN02921 naphthoate synthase
Probab=99.00 E-value=1.3e-09 Score=110.41 Aligned_cols=96 Identities=20% Similarity=0.216 Sum_probs=77.5
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.++|.+||++++..+ |
T Consensus 225 llltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 268 (327)
T PLN02921 225 MWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNS-P----------------------------------- 268 (327)
T ss_pred HHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~k 133 (518)
.+...+|++++..... .+.....|...+..++.|+++++++.+|.+||++..
T Consensus 269 ~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f 320 (327)
T PLN02921 269 TAIRVLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDF 320 (327)
T ss_pred HHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 1444677777766432 333334455888999999999999999999887653
No 143
>PLN02712 arogenate dehydrogenase
Probab=98.99 E-value=1.4e-08 Score=112.14 Aligned_cols=153 Identities=15% Similarity=0.111 Sum_probs=103.7
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c-
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F- 224 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~- 224 (518)
.++|+|||+|.||..+|..|.++|++|+++|++... +.+. +.|. ...++.++ +
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~-----------~~Gv-------------~~~~d~~e~~~ 106 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAAR-----------SLGV-------------SFFLDPHDLCE 106 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHH-----------HcCC-------------EEeCCHHHHhh
Confidence 358999999999999999999999999999998543 2211 1121 12334433 3
Q ss_pred cCCCEEEEecccChHhHHHHHHHHh-hhCCCCcEEEEcCCCcc--hhhhhhhccCcCceeecccccccCC-----CCeEE
Q 010109 225 KDVDMVIEAIIENVSLKQQIFADLE-KYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAHV-----MPLLE 296 (518)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~-~~~~~~~il~sntS~l~--i~~la~~~~~~~r~ig~hf~~P~~~-----~~lve 296 (518)
.+||+||.|+|.. .-.+++.++. ..++++++|++.+|... +..+...++...+|++.||+..++. .....
T Consensus 107 ~~aDvViLavP~~--~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~ 184 (667)
T PLN02712 107 RHPDVILLCTSII--STENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRF 184 (667)
T ss_pred cCCCEEEEcCCHH--HHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcE
Confidence 4699999999954 4467777775 56788999887776542 2344444444447999999865441 11112
Q ss_pred EEe-----CCCCcHHHHHHHHHHHHhcCCcEEEeC
Q 010109 297 IVR-----TNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (518)
Q Consensus 297 iv~-----g~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (518)
+.. .+....+.++.+.++++.+|..++.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms 219 (667)
T PLN02712 185 VYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMS 219 (667)
T ss_pred EEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeC
Confidence 222 222334567778899999999999886
No 144
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=98.98 E-value=1.5e-09 Score=106.72 Aligned_cols=95 Identities=19% Similarity=0.275 Sum_probs=75.0
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.++|.+++++++..+ |
T Consensus 158 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~-~----------------------------------- 201 (256)
T TIGR03210 158 IWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKS-P----------------------------------- 201 (256)
T ss_pred HHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998762 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|++++......... ...|...+..++.|+++++++.+|++||+++
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~-~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~ 252 (256)
T TIGR03210 202 TAIAIAKRSFNMDTAHQRGI-AGMGMYALKLYYDTAESREGVKAFQEKRKPE 252 (256)
T ss_pred HHHHHHHHHHHHhhcccchH-HHHHHHHHHHHccChhHHHHHHHHhccCCCC
Confidence 13445677777654332111 1235678888999999999999999988754
No 145
>PRK08321 naphthoate synthase; Validated
Probab=98.98 E-value=1.4e-09 Score=109.36 Aligned_cols=96 Identities=21% Similarity=0.239 Sum_probs=79.5
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|++||++++|+||+++||||+|||++++.+.|.+++++++..+ |
T Consensus 200 l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 243 (302)
T PRK08321 200 IFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKS-P----------------------------------- 243 (302)
T ss_pred HHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~k 133 (518)
.+...+|++++.... ...+....|.+.+..++.++++++++.+|+++|++..
T Consensus 244 ~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~ 295 (302)
T PRK08321 244 TAMRMLKYAFNLTDD-GLVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDW 295 (302)
T ss_pred HHHHHHHHHHHhhhc-ccHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 134467777776544 3444456689999999999999999999999887653
No 146
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.97 E-value=1.8e-09 Score=89.46 Aligned_cols=91 Identities=22% Similarity=0.248 Sum_probs=68.1
Q ss_pred EEEEEeCCcchHHHHHHHHhCC---CcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 010109 149 KVAILGGGLMGSGIATALILSN---YPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (518)
Q Consensus 149 kV~VIGaG~MG~~iA~~la~~G---~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (518)
||+|||+|.||.+|+..|+++| ++|+++ +++++++++..++ .+ ......+..+.+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~----------~~-----------~~~~~~~~~~~~ 59 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKE----------YG-----------VQATADDNEEAA 59 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHH----------CT-----------TEEESEEHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHh----------hc-----------cccccCChHHhh
Confidence 7999999999999999999999 899966 9999988774321 11 011122345668
Q ss_pred cCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCC
Q 010109 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (518)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (518)
+++|+||.|||.. .-.+++.++ ....++.+++|.++
T Consensus 60 ~~advvilav~p~--~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 60 QEADVVILAVKPQ--QLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp HHTSEEEE-S-GG--GHHHHHHHH-HHHHTTSEEEEEST
T ss_pred ccCCEEEEEECHH--HHHHHHHHH-hhccCCCEEEEeCC
Confidence 8999999999755 456888888 66778888888765
No 147
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.97 E-value=2.9e-08 Score=105.32 Aligned_cols=204 Identities=17% Similarity=0.231 Sum_probs=126.6
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 010109 147 VKKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRV----RANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (518)
+|||+|||+|.+|..+|..|+++| ++|+++|++++.++...+.. +..++.++.++ .-.+++++++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~---------~~~~l~~t~~ 71 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQC---------RGKNLFFSTD 71 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHh---------hcCCEEEEcC
Confidence 478999999999999999999985 78999999999988743211 11111111110 1124778888
Q ss_pred cc-cccCCCEEEEeccc-------------ChHhHHHHHHHHhhhCCCCcEEEEcCCCcchh---hhhhhccCcCceeec
Q 010109 221 YE-SFKDVDMVIEAIIE-------------NVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGA 283 (518)
Q Consensus 221 ~~-~~~~aDlVIeav~e-------------~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~---~la~~~~~~~r~ig~ 283 (518)
++ .+++||++|.|||. |+....++.++|.++++++++|+ ..||.++. .+...+..... |.
T Consensus 72 ~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv-~~STvp~Gtt~~~~~~l~~~~~--g~ 148 (473)
T PLN02353 72 VEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK--GI 148 (473)
T ss_pred HHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEE-EeCCCCCChHHHHHHHHHhhCC--CC
Confidence 75 58999999999952 22345677788999999888765 45666554 33322211100 21
Q ss_pred cc---ccccCCC---------CeEEEE-eCCC--CcHHHHHHHHHHHHhcC-CcEEEeCCc-----ccchhhhhH---HH
Q 010109 284 HF---FSPAHVM---------PLLEIV-RTNQ--TSPQVIVDLLDIGKKIK-KTPIVVGNC-----TGFAVNRMF---FP 339 (518)
Q Consensus 284 hf---~~P~~~~---------~lveiv-~g~~--t~~e~~~~~~~l~~~lG-k~~v~v~d~-----~Gfi~nril---~~ 339 (518)
.| ++|-... ..--|| .+.. +.+++.+.+.++++.+- ..++.+.+. ...+-|-.. .+
T Consensus 149 ~f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Ia 228 (473)
T PLN02353 149 NFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRIS 228 (473)
T ss_pred CeEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHH
Confidence 11 2443221 111243 4431 22557788888888764 245555431 123345332 36
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHHH
Q 010109 340 YTQAAFLLVE-RGTDLYLIDRAIT 362 (518)
Q Consensus 340 ~~~Ea~~l~~-~G~~~~~ID~a~~ 362 (518)
++||-..+.+ .|+++.+|-.++.
T Consensus 229 f~NEla~lce~~giD~~eV~~~~~ 252 (473)
T PLN02353 229 SVNAMSALCEATGADVSQVSHAVG 252 (473)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHhC
Confidence 7899888775 5999999888875
No 148
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=98.96 E-value=2e-09 Score=106.22 Aligned_cols=92 Identities=24% Similarity=0.268 Sum_probs=75.5
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.+.|.++|++++..+ |
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~-~----------------------------------- 210 (262)
T PRK06144 167 MLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHA-P----------------------------------- 210 (262)
T ss_pred HHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|+.++..... .+..+.+.+..++.++++++++.+|+++|+++
T Consensus 211 ~a~~~~K~~l~~~~~~----~l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~ 258 (262)
T PRK06144 211 LTLRATKEALRRLRRE----GLPDGDDLIRMCYMSEDFREGVEAFLEKRPPK 258 (262)
T ss_pred HHHHHHHHHHHHhhhc----CHHHHHHHHHHHhcChHHHHHHHHHhcCCCCC
Confidence 1334567777665433 34556778899999999999999999987654
No 149
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.96 E-value=3.3e-09 Score=98.80 Aligned_cols=109 Identities=23% Similarity=0.311 Sum_probs=73.5
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC--HHH----HHhh--hccccccc
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT--QEK----FEKT--ISLLTGVL 219 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~--~~~----~~~~--~~~i~~~~ 219 (518)
|||+|||+|.+|..+|..|+++||+|+.+|+|++.++...+ |... +.. ..+. -.++++++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~------------g~~p~~E~~l~~ll~~~~~~~~l~~t~ 68 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNN------------GELPIYEPGLDELLKENVSAGRLRATT 68 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHT------------TSSSS-CTTHHHHHHHHHHTTSEEEES
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhh------------ccccccccchhhhhccccccccchhhh
Confidence 69999999999999999999999999999999998876432 2211 000 1111 24677888
Q ss_pred Cccc-ccCCCEEEEeccc--------ChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhh
Q 010109 220 DYES-FKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTIDLNL 269 (518)
Q Consensus 220 ~~~~-~~~aDlVIeav~e--------~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ 269 (518)
+.+. +.+||++|.|||- |.....++...|.++++++.+++ .-||+++..
T Consensus 69 ~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV-~~STvppGt 126 (185)
T PF03721_consen 69 DIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVV-IESTVPPGT 126 (185)
T ss_dssp EHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEE-ESSSSSTTH
T ss_pred hhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEE-EccEEEEee
Confidence 8765 8999999999963 33445677888999999988775 567776653
No 150
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=98.95 E-value=2.2e-09 Score=105.26 Aligned_cols=91 Identities=16% Similarity=0.255 Sum_probs=77.9
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|++|+++||||+|||++++.++|.+++++++..+ |
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 204 (251)
T PRK06023 161 LLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKP-P----------------------------------- 204 (251)
T ss_pred HHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ 128 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~k 128 (518)
.+...+|++++... .++++.+..|.+.+..++.++++++++++|+++
T Consensus 205 ~a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~ 251 (251)
T PRK06023 205 QALQIARDLMRGPR-EDILARIDEEAKHFAARLKSAEARAAFEAFMRR 251 (251)
T ss_pred HHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 13345777777653 468888999999999999999999999999863
No 151
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=98.94 E-value=1.7e-09 Score=105.65 Aligned_cols=92 Identities=25% Similarity=0.370 Sum_probs=82.3
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|++|+++||||+|+|++++.+.|.+++++++..+ |
T Consensus 154 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 197 (245)
T PF00378_consen 154 LLLTGEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKP-P----------------------------------- 197 (245)
T ss_dssp HHHHTCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred cccccccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCC-H-----------------------------------
Confidence 4689999999999999999999999999999999999998862 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ 128 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~k 128 (518)
.+...+|+.++.....+..+.+..|.+.+..++.++++++++++|++|
T Consensus 198 ~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK 245 (245)
T PF00378_consen 198 SALRATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK 245 (245)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence 134467888888888889999999999999999999999999999976
No 152
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=98.94 E-value=3.2e-09 Score=106.62 Aligned_cols=99 Identities=20% Similarity=0.229 Sum_probs=79.2
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.+.|.+++++++....|
T Consensus 177 llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~----------------------------------- 221 (296)
T PRK08260 177 WVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSP----------------------------------- 221 (296)
T ss_pred HHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCCh-----------------------------------
Confidence 578999999999999999999999999999999999999874112
Q ss_pred CcHHHHHHHHHHhhhCC-hHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCCCC
Q 010109 81 THPIVCIDVVEAGVVSG-PRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~-~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~k~ 134 (518)
.+...+|++++...... ..+....|...+..++.++++++++.+|+++|++...
T Consensus 222 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f~ 276 (296)
T PRK08260 222 VSVALTRQMMWRMAGADHPMEAHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVFP 276 (296)
T ss_pred HHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHccChhHHHHHHHHhcCCCCCCC
Confidence 14446788887764221 2234466888999999999999999999998876543
No 153
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=98.92 E-value=2e-09 Score=105.33 Aligned_cols=90 Identities=14% Similarity=0.040 Sum_probs=79.1
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|| +++.+.|.++|++++..+ |
T Consensus 159 l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~-~----------------------------------- 200 (249)
T PRK05870 159 ALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAP-R----------------------------------- 200 (249)
T ss_pred HHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 57899999999999999999999 679999999999998862 2
Q ss_pred CcHHHHHHHHHHhhh-CChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 010109 81 THPIVCIDVVEAGVV-SGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ 128 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~-~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~k 128 (518)
.+...+|+.++.... .++++++..|.+.+..++.|+++++++++|+++
T Consensus 201 ~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~ 249 (249)
T PRK05870 201 ELVLATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR 249 (249)
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence 144568888888776 789999999999999999999999999999863
No 154
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.92 E-value=2.4e-08 Score=102.35 Aligned_cols=170 Identities=14% Similarity=0.126 Sum_probs=109.0
Q ss_pred ccceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC---CHHHHHhhhcccccccCc
Q 010109 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM---TQEKFEKTISLLTGVLDY 221 (518)
Q Consensus 145 ~~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~---~~~~~~~~~~~i~~~~~~ 221 (518)
+.++||+|||+|.||+.+|..|+++| +|++|.++++..+...+ .+.- .+.. .....++..+++.
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~-----------~~~~~~~l~~~-~~l~~~i~~t~d~ 71 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDIND-----------NHRNSRYLGND-VVLSDTLRATTDF 71 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHh-----------cCCCcccCCCC-cccCCCeEEECCH
Confidence 34579999999999999999999999 79999999987665332 1100 0000 0111245556666
Q ss_pred c-cccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchh-------hhhhhccCcCce-eecccccccC--
Q 010109 222 E-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-------LIGERTYSKDRI-VGAHFFSPAH-- 290 (518)
Q Consensus 222 ~-~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~-------~la~~~~~~~r~-ig~hf~~P~~-- 290 (518)
+ .+.++|+||.|||.. .-+++++++.+.++++++++|.+.++... .+.+.++. .++ +-..|..+.+
T Consensus 72 ~~a~~~aDlVilavps~--~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~-~~~~~l~GP~~a~ev~ 148 (341)
T PRK12439 72 AEAANCADVVVMGVPSH--GFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG-HPAGILAGPNIAREVA 148 (341)
T ss_pred HHHHhcCCEEEEEeCHH--HHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC-CCeEEEECCCHHHHHH
Confidence 4 578999999999854 45788999999999988777777677652 33343321 121 1111211111
Q ss_pred -CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCcEEEeCCcccch
Q 010109 291 -VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFA 332 (518)
Q Consensus 291 -~~~lveiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi 332 (518)
..+...++.+. +++..+.+.+++..-+..+....|..|..
T Consensus 149 ~g~~t~~via~~--~~~~~~~v~~lf~~~~~~v~~s~Di~gve 189 (341)
T PRK12439 149 EGYAAAAVLAMP--DQHLATRLSPLFRTRRFRVYTTDDVVGVE 189 (341)
T ss_pred cCCCeEEEEEeC--CHHHHHHHHHHhCCCCEEEEEcCchHHHH
Confidence 22323333332 67778888999988887777777765543
No 155
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.92 E-value=7.5e-09 Score=89.80 Aligned_cols=115 Identities=18% Similarity=0.221 Sum_probs=71.8
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (518)
-.||+|||+|.+|..++..|.++||+|..+ .++++..+++... +......+..+.+.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~----------------------~~~~~~~~~~~~~~ 67 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAF----------------------IGAGAILDLEEILR 67 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------------------TT-----TTGGGC
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccc----------------------cccccccccccccc
Confidence 469999999999999999999999998765 7887766654321 11111222235578
Q ss_pred CCCEEEEecccChHhHHHHHHHHhhh--CCCCcEEEEcCCCcchhhhhhhccCcCceeeccc
Q 010109 226 DVDMVIEAIIENVSLKQQIFADLEKY--CPPHCILASNTSTIDLNLIGERTYSKDRIVGAHF 285 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~--~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf 285 (518)
++|+||.+||++ .-..+.++|... ..++.+++=.+.+++.+-+.....+...+..+||
T Consensus 68 ~aDlv~iavpDd--aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 68 DADLVFIAVPDD--AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp C-SEEEE-S-CC--HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred cCCEEEEEechH--HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 999999999988 346888898876 7788887643334666666555445556666775
No 156
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=98.92 E-value=4.4e-09 Score=102.86 Aligned_cols=93 Identities=19% Similarity=0.194 Sum_probs=79.4
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||.+ +++++.|.++|++++.. |+
T Consensus 152 lll~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~--~~---------------------------------- 192 (248)
T PRK06072 152 ILVLGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNG--PF---------------------------------- 192 (248)
T ss_pred HHHhCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 4789999999999999999964 35788999999999875 22
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|++++.....++++.++.|.+.+..++.|+++++++.+|+++|+++
T Consensus 193 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 244 (248)
T PRK06072 193 QSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPK 244 (248)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCC
Confidence 1444678888887777899999999999999999999999999999988764
No 157
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.92 E-value=4.1e-08 Score=103.62 Aligned_cols=177 Identities=14% Similarity=0.150 Sum_probs=120.0
Q ss_pred chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc----ccCCCEEEEe
Q 010109 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES----FKDVDMVIEA 233 (518)
Q Consensus 158 MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~----~~~aDlVIea 233 (518)
||.+||.+|+++||+|++||+++++.+...+. .|. . ..+....++++ ++.+|+||.+
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~----------~g~-~--------~g~~~~~s~~e~v~~l~~~~~Ii~m 61 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAE----------EGK-G--------KKIVPAYTLEEFVASLEKPRKILLM 61 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHh----------hCC-C--------CCeEeeCCHHHHHhhCCCCCEEEEE
Confidence 89999999999999999999999988764320 110 0 01223344433 3358999999
Q ss_pred cccChHhHHHHHHHHhhhCCCCcEEEEcCCCcch--hhhhhhccCcCceeeccccc-ccCC-------CCeEEEEeCCCC
Q 010109 234 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYSKDRIVGAHFFS-PAHV-------MPLLEIVRTNQT 303 (518)
Q Consensus 234 v~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i--~~la~~~~~~~r~ig~hf~~-P~~~-------~~lveiv~g~~t 303 (518)
||....+ .+++..|.+.+.++.|++..+++.+- .+.++.+.. .|.||+. |+.. ++ .+++| .
T Consensus 62 v~~g~~v-~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~----~Gi~fvdapVSGG~~gA~~G~--siM~G--G 132 (459)
T PRK09287 62 VKAGAPV-DAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAE----KGIHFIGMGVSGGEEGALHGP--SIMPG--G 132 (459)
T ss_pred CCCchHH-HHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCeEEecCCCCCHHHHhcCC--EEEEe--C
Confidence 9988765 56668888889888888754433222 233333321 3556652 4432 33 34554 3
Q ss_pred cHHHHHHHHHHHHhcCCcE-------EEeCC-cccc----hhhhhHHH---HHHHHHHHHH--cCCCHHHHHHHHH
Q 010109 304 SPQVIVDLLDIGKKIKKTP-------IVVGN-CTGF----AVNRMFFP---YTQAAFLLVE--RGTDLYLIDRAIT 362 (518)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~-------v~v~d-~~Gf----i~nril~~---~~~Ea~~l~~--~G~~~~~ID~a~~ 362 (518)
++++++.++++++.++..+ .++++ ..|. +.|-+.+. .+.|++.+++ .|++++++-.++.
T Consensus 133 ~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~ 208 (459)
T PRK09287 133 QKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA 208 (459)
T ss_pred CHHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 7899999999999999776 78875 3343 33545544 3689999987 4889999988885
No 158
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=98.91 E-value=3.9e-09 Score=104.23 Aligned_cols=94 Identities=23% Similarity=0.269 Sum_probs=80.9
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|++|+++||||+||+ ++.+.+.+++++++..+ |
T Consensus 166 l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~~~~-~----------------------------------- 207 (262)
T PRK07509 166 LTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIAQRS-P----------------------------------- 207 (262)
T ss_pred HHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 578999999999999999999995 37889999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|+.++.....++++++..|.+.+..++.++++++++.+|+++|++.
T Consensus 208 ~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~ 259 (262)
T PRK07509 208 DAIAAAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPK 259 (262)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 1444678888887778899999999999999999999999999999987653
No 159
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=98.89 E-value=4.7e-09 Score=103.89 Aligned_cols=93 Identities=18% Similarity=0.138 Sum_probs=72.1
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++++.|.++|++++..+ |.
T Consensus 170 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~---------------------------------- 214 (268)
T PRK07327 170 YLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGS-QT---------------------------------- 214 (268)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence 5789999999999999999999999999999999999998752 21
Q ss_pred CcHHHHHHHHHHhhh---CChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCCC
Q 010109 81 THPIVCIDVVEAGVV---SGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~---~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~k 133 (518)
+...+|++++.... .+++..+..|. .++.|+++++++.+|++||+++.
T Consensus 215 -a~~~~K~~l~~~~~~~~~~~~~~~~~~~----~~~~~~d~~eg~~af~ekr~p~~ 265 (268)
T PRK07327 215 -AIRWTKYALNNWLRMAGPTFDTSLALEF----MGFSGPDVREGLASLREKRAPDF 265 (268)
T ss_pred -HHHHHHHHHHHhhhhhhhhHHHHHHHHH----HHccChhHHHHHHHHHhcCCCCC
Confidence 33356666665421 23555555443 46789999999999999887653
No 160
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=98.87 E-value=8.8e-09 Score=100.90 Aligned_cols=94 Identities=16% Similarity=0.300 Sum_probs=75.7
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHH-HHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQW-ALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~-a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (518)
|+++|++++|+||+++||||+|+|+++ +.+.++ +++++..+ |
T Consensus 152 l~ltg~~~~a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~-p---------------------------------- 194 (251)
T TIGR03189 152 LLYSGRSIDGAEGARIGLANAVAEDPE--NAALAWFDEHPAKLS-A---------------------------------- 194 (251)
T ss_pred HHHcCCCCCHHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCC-H----------------------------------
Confidence 578999999999999999999997543 566666 57777652 2
Q ss_pred CCcHHHHHHHHHHhhhCChHHHHH-HHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 80 LTHPIVCIDVVEAGVVSGPRAGLQ-KEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l~-~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|++++.....++++++. .|.+.+..++.|+++++++.+|++||++.
T Consensus 195 -~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~ 247 (251)
T TIGR03189 195 -SSLRFAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPAL 247 (251)
T ss_pred -HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCC
Confidence 14446788888777777887764 78889999999999999999999988764
No 161
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.86 E-value=7.2e-09 Score=101.82 Aligned_cols=93 Identities=16% Similarity=0.091 Sum_probs=76.1
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||+++. .+.+++++++..+ |
T Consensus 159 l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~-p----------------------------------- 200 (255)
T PRK07112 159 MTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLN-K----------------------------------- 200 (255)
T ss_pred HHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999987653 5777888887652 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|++++.. ..+++++++.|.+.+..++.|+++++++.+|+++|++.
T Consensus 201 ~a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~ 251 (255)
T PRK07112 201 AAVARYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFP 251 (255)
T ss_pred HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCC
Confidence 1444677777764 44688999999999999999999999999999987653
No 162
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.85 E-value=6e-08 Score=97.84 Aligned_cols=167 Identities=15% Similarity=0.132 Sum_probs=98.4
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccCccc-cc
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYES-FK 225 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~-~~ 225 (518)
+||+|||+|.||..+|..|+++|++|+++++ ++.++... +.|. +.....+.. -.....++.+. ..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~-----------~~g~~~~~~~~~~~-~~~~~~~~~~~~~~ 67 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALR-----------ERGLVIRSDHGDAV-VPGPVITDPEELTG 67 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHH-----------hCCeEEEeCCCeEE-ecceeecCHHHccC
Confidence 4899999999999999999999999999999 66655422 1121 000000000 01112334443 48
Q ss_pred CCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcch-hhhhhhccCcCcee-ecccc-----cccCC----CCe
Q 010109 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIV-GAHFF-----SPAHV----MPL 294 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i-~~la~~~~~~~r~i-g~hf~-----~P~~~----~~l 294 (518)
++|+||.|++... -.++++++.+.++++++|++..-++.. +.+...++. .+++ |..++ .|-.. ...
T Consensus 68 ~~d~vilavk~~~--~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~ 144 (305)
T PRK12921 68 PFDLVILAVKAYQ--LDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHR 144 (305)
T ss_pred CCCEEEEEecccC--HHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCc
Confidence 8999999998653 357788888888888877766667653 345544432 2343 33332 22111 011
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCcEEEeCCccc
Q 010109 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (518)
Q Consensus 295 veiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G 330 (518)
+.+-..+....+..+.+..++...|.......|...
T Consensus 145 ~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~ 180 (305)
T PRK12921 145 LTFGEIPGQRSERTRAVRDALAGARLEVVLSENIRQ 180 (305)
T ss_pred EEEcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHH
Confidence 112111223345666777788888866666666433
No 163
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=98.85 E-value=4.1e-09 Score=107.67 Aligned_cols=130 Identities=19% Similarity=0.167 Sum_probs=82.6
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHh-----------hh-hcCCCchhh-h-----cccCCCCCchHH
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALD-----------IL-EHRRPWVAT-L-----YKTDKIEPLGEA 62 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~-----------l~-~~~~p~~~~-~-----~~~~~~~~~~~~ 62 (518)
|++||++++|++|+++||||+|||++++.+....+++. +. ....+.... . .....+... ..
T Consensus 163 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 241 (342)
T PRK05617 163 LALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGD-TV 241 (342)
T ss_pred HHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCC-CH
Confidence 57899999999999999999999998887764433310 00 000000000 0 000000000 00
Q ss_pred HHHHH--------HHHHHHHhh-CCCCCcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHh-hh-hcC
Q 010109 63 REIFK--------FARAQARKQ-APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF-AQ-RGT 131 (518)
Q Consensus 63 ~~~~~--------~a~~~~~~~-~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~-~k-r~~ 131 (518)
..++. .+.+.+++- ...+.+...+|++++.+...+++++++.|.+.+..++.++++++++++|+ +| |.+
T Consensus 242 ~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r~p 321 (342)
T PRK05617 242 EDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDRNP 321 (342)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCCCC
Confidence 01111 122233332 23466888999999998888999999999999999999999999999997 55 444
No 164
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=98.85 E-value=1e-09 Score=91.17 Aligned_cols=51 Identities=8% Similarity=-0.113 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHhhccccCccccccccccccccCchhhHHHHHHHHHhh
Q 010109 464 LWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 516 (518)
Q Consensus 464 i~~r~~~~~~nea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (518)
|+||++++++|||+++++++++|++||| .+++.+.|+|+|||+++|.+|-.
T Consensus 3 i~nRl~~~~~~ea~~l~~egvas~~~ID--~~~~~~~G~p~Gpf~l~D~~Gl~ 53 (97)
T PF00725_consen 3 IVNRLLAALLNEAARLVEEGVASPEDID--RAMRYGLGFPMGPFELADLVGLD 53 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTSSSHHHHH--HHHHHHHTHSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHH--HHHHHhCCCCCccchHHHHhCch
Confidence 5799999999999999999999999999 99999999999999999999854
No 165
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=98.84 E-value=9.7e-09 Score=101.25 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=81.0
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|++|+++||||++++ ++.+.+.+++++++..+ |
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~-~----------------------------------- 205 (260)
T PRK07827 164 YYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGS-P----------------------------------- 205 (260)
T ss_pred HHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 578999999999999999999974 58999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT 131 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~ 131 (518)
.+...+|+.++.....++++.++.|...+..++.++++++++.+|.++|++
T Consensus 206 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p 256 (260)
T PRK07827 206 QGLAESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPP 256 (260)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCC
Confidence 244578888888877889999999999999999999999999999988764
No 166
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.81 E-value=1.5e-08 Score=99.27 Aligned_cols=90 Identities=18% Similarity=0.236 Sum_probs=79.5
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|++|+++||||+|||++++.+.|.++|+++++. |+
T Consensus 158 llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 201 (249)
T PRK07110 158 MLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEK--PR---------------------------------- 201 (249)
T ss_pred HHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999875 22
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF 126 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~ 126 (518)
.+...+|+.++.....+++++++.|.+.|..++.|+++++++...+
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~~ 247 (249)
T PRK07110 202 HSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESLY 247 (249)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHhc
Confidence 1444688899888888999999999999999999999999988643
No 167
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=98.81 E-value=1.6e-08 Score=98.60 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=75.2
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|++ +. .|.+++++++..+ |
T Consensus 150 l~ltg~~~~a~eA~~~Glv~~v~~---~~-~a~~~a~~l~~~~-~----------------------------------- 189 (243)
T PRK07854 150 MLLGAEKLTAEQALATGMANRIGT---LA-DAQAWAAEIAGLA-P----------------------------------- 189 (243)
T ss_pred HHHcCCCcCHHHHHHCCCcccccC---HH-HHHHHHHHHHhCC-H-----------------------------------
Confidence 578999999999999999999975 23 7899999988752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.+...+|+.++.. .+++++++.|.+.+..++.++++++++.+|+++|++.
T Consensus 190 ~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 239 (243)
T PRK07854 190 LALQHAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPK 239 (243)
T ss_pred HHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCC
Confidence 1444677887765 5689999999999999999999999999999987654
No 168
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.80 E-value=5.8e-08 Score=99.03 Aligned_cols=167 Identities=16% Similarity=0.165 Sum_probs=99.0
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHhhhcccccccCccc-c
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK--MTQEKFEKTISLLTGVLDYES-F 224 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~--~~~~~~~~~~~~i~~~~~~~~-~ 224 (518)
+||+|||+|.||+.+|..|+++|++|++|+++++.++...+. ..+. +.. ......+..+++++. +
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~---------~~~~~~~~~---~~~~~~i~~~~~~~~~~ 68 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTK---------RKNLKYLPT---CHLPDNISVKSAIDEVL 68 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc---------CCCcccCCC---CcCCCCeEEeCCHHHHH
Confidence 479999999999999999999999999999998776543210 0010 000 001123344555543 4
Q ss_pred -cCCCEEEEecccChHhHHHHHHHHhh-hCCCCcEEEEcCCCcch------h-hhhhhccCcCceeeccccccc------
Q 010109 225 -KDVDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTSTIDL------N-LIGERTYSKDRIVGAHFFSPA------ 289 (518)
Q Consensus 225 -~~aDlVIeav~e~~~~k~~v~~~l~~-~~~~~~il~sntS~l~i------~-~la~~~~~~~r~ig~hf~~P~------ 289 (518)
.++|+||.+||.. .-.++++++.+ .+.+++++++.+.++.. + .+...+++. ++.. +..|.
T Consensus 69 ~~~~Dliiiavks~--~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~-~~~~--~~Gp~~a~~~~ 143 (326)
T PRK14620 69 SDNATCIILAVPTQ--QLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNN-PIAI--LSGPSFAKEIA 143 (326)
T ss_pred hCCCCEEEEEeCHH--HHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCC-ceEe--ecCCcHHHHHH
Confidence 5899999999865 34678888887 88888766666766643 2 233333221 1110 01121
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCcEEEeCCcccchh
Q 010109 290 HVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAV 333 (518)
Q Consensus 290 ~~~~lveiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~ 333 (518)
...+....+.+ .+.+....+.+++..-+..+....|..|..+
T Consensus 144 ~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~Di~g~~~ 185 (326)
T PRK14620 144 EKLPCSIVLAG--QNETLGSSLISKLSNENLKIIYSQDIIGVQI 185 (326)
T ss_pred cCCCcEEEEec--CCHHHHHHHHHHHCCCCeEEEecCcchhhhh
Confidence 11221112233 3445566666677666666666667666543
No 169
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.79 E-value=1.2e-08 Score=102.60 Aligned_cols=102 Identities=19% Similarity=0.290 Sum_probs=70.1
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (518)
+||+|||+|.||.++|..++..|+ +|+++|++++. ..+.. .+.++ .+ .......+++++++++++++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l-~~g~a--~d~~~----~~-----~~~~~~~~i~~t~d~~~~~~ 69 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGI-PQGKA--LDMYE----AS-----PVGGFDTKVTGTNNYADTAN 69 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCCh-hHHHH--Hhhhh----hh-----hccCCCcEEEecCCHHHhCC
Confidence 489999999999999999999887 89999998764 33221 11111 11 01112347878888988999
Q ss_pred CCEEEEecc--------------cChHhHHHHHHHHhhhCCCCcEEEEcC
Q 010109 227 VDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (518)
Q Consensus 227 aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~snt 262 (518)
||+||.++. .+..+-+++..++.+++ ++++++..|
T Consensus 70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~t 118 (305)
T TIGR01763 70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVS 118 (305)
T ss_pred CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 999999996 23345556667788775 455544333
No 170
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.79 E-value=3.6e-07 Score=91.38 Aligned_cols=194 Identities=14% Similarity=0.159 Sum_probs=129.3
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc----
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES---- 223 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---- 223 (518)
..|||||+|+||+.+|..++++||.|.+|+|+.++.+...+. .+. ..+|.+..++++
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~----------~~~---------~k~i~~~~sieefV~~ 64 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAE----------RAK---------GKNIVPAYSIEEFVAS 64 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHh----------Ccc---------CCCccccCcHHHHHHH
Confidence 579999999999999999999999999999999998875531 110 113444445443
Q ss_pred ccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchh---hhhhhccCcCceeecccccc---cCCCCeEEE
Q 010109 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFSP---AHVMPLLEI 297 (518)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~---~la~~~~~~~r~ig~hf~~P---~~~~~lvei 297 (518)
++.---|+.+|... .....++++|.+++.++-|+++-..+.-.+ +..+.....-.|+|+---.. +..+| .|
T Consensus 65 Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GP--Si 141 (473)
T COG0362 65 LEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGP--SI 141 (473)
T ss_pred hcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCC--Cc
Confidence 56667777777554 223678899999999999998765443222 22222233445666644211 11111 24
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCC----cE--EEeC-Ccccchh----hhhHH---HHHHHHHHHHHcC--CCHHHHHHHH
Q 010109 298 VRTNQTSPQVIVDLLDIGKKIKK----TP--IVVG-NCTGFAV----NRMFF---PYTQAAFLLVERG--TDLYLIDRAI 361 (518)
Q Consensus 298 v~g~~t~~e~~~~~~~l~~~lGk----~~--v~v~-d~~Gfi~----nril~---~~~~Ea~~l~~~G--~~~~~ID~a~ 361 (518)
++| .++++.+.+.+++..+.. .| .+++ +..|.++ |-|=+ .++.|+..++.+| .|.++|-.++
T Consensus 142 MpG--G~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF 219 (473)
T COG0362 142 MPG--GQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVF 219 (473)
T ss_pred CCC--CCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 555 478889999999887642 22 3444 5566543 55544 3589999999875 4999999988
Q ss_pred HhcC
Q 010109 362 TKFG 365 (518)
Q Consensus 362 ~~~G 365 (518)
..+.
T Consensus 220 ~~WN 223 (473)
T COG0362 220 EEWN 223 (473)
T ss_pred HHhc
Confidence 7543
No 171
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.77 E-value=1.3e-07 Score=95.38 Aligned_cols=163 Identities=18% Similarity=0.117 Sum_probs=97.7
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (518)
+||+|||+|.||+.+|..|+++|++|++++++++.++...+ .|. .-.+. .....+..+++.+.+.++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~-----------~g~-~~~~~-~~~~~~~~~~~~~~~~~~ 67 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE-----------NGL-RLEDG-EITVPVLAADDPAELGPQ 67 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH-----------cCC-cccCC-ceeecccCCCChhHcCCC
Confidence 48999999999999999999999999999998877655321 121 00000 001112233444456899
Q ss_pred CEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcch-hhhhhhccCcCcee-eccc-----ccccC---CCC-eEE
Q 010109 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIV-GAHF-----FSPAH---VMP-LLE 296 (518)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i-~~la~~~~~~~r~i-g~hf-----~~P~~---~~~-lve 296 (518)
|+||.|++... ...+++.+.+.+.++++|++...++.. +.+...+.. .+++ |..+ ..|.. ..+ .+.
T Consensus 68 d~vila~k~~~--~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~~~-~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ 144 (304)
T PRK06522 68 DLVILAVKAYQ--LPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIGP-ERVLGGVVTHAAELEGPGVVRHTGGGRLK 144 (304)
T ss_pred CEEEEeccccc--HHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhcCc-ccEEEEEEEEeeEecCCCEEEEcCCCCEE
Confidence 99999998652 367889999888888877777777764 444444432 2333 2211 12211 111 122
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCcEEEeCC
Q 010109 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (518)
Q Consensus 297 iv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (518)
+-..+. +.+..+.+.+++...|....+..|
T Consensus 145 ig~~~~-~~~~~~~l~~~l~~~~~~~~~~~d 174 (304)
T PRK06522 145 IGEPDG-ESAAAEALADLLNAAGLDVEWSPD 174 (304)
T ss_pred EeCCCC-CcHHHHHHHHHHHhcCCCCCCChH
Confidence 222222 223456677777777765544444
No 172
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=98.75 E-value=3e-08 Score=97.48 Aligned_cols=93 Identities=25% Similarity=0.263 Sum_probs=79.4
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|||++++.+.|.+|+++++..+ |
T Consensus 158 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 201 (258)
T PRK06190 158 MSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNN-P----------------------------------- 201 (258)
T ss_pred HHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCC---HHHHHHHHHHhhhh
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRS---ETCKSLVHIFFAQR 129 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s---~~a~~~i~aF~~kr 129 (518)
.+...+|++++.....+++++++.|...+..++.| +...+....|.++-
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~ 253 (258)
T PRK06190 202 AAVRALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMARG 253 (258)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhh
Confidence 14446888888887888999999999999999998 66677777777643
No 173
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.74 E-value=1.6e-07 Score=88.06 Aligned_cols=114 Identities=11% Similarity=0.066 Sum_probs=82.8
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 010109 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (518)
+||+|||+ |.||+-++..|.++|++|++ .+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~-------------------------------------------------~~ 31 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI-------------------------------------------------KK 31 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEE-------------------------------------------------CC
Confidence 48999999 99999999999999999861 36
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCC-C----CeEEEEeCC
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-M----PLLEIVRTN 301 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~-~----~lveiv~g~ 301 (518)
||+||.|+|.+. -.++++++. .+|++.+|... .+.+. ..+|+|.||+..+.. . ..+-+ ..+
T Consensus 32 ~DlVilavPv~~--~~~~i~~~~------~~v~Dv~SvK~--~i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv-~~~ 97 (197)
T PRK06444 32 ADHAFLSVPIDA--ALNYIESYD------NNFVEISSVKW--PFKKY---SGKIVSIHPLFGPMSYNDGVHRTVIF-IND 97 (197)
T ss_pred CCEEEEeCCHHH--HHHHHHHhC------CeEEeccccCH--HHHHh---cCCEEecCCCCCCCcCcccccceEEE-ECC
Confidence 999999999763 245555543 36777777664 23322 347999999864322 1 22323 466
Q ss_pred CCcHHHHHHHHHHHHhcCCcEEEeC
Q 010109 302 QTSPQVIVDLLDIGKKIKKTPIVVG 326 (518)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (518)
.++++.++.+.++++ |..++.+.
T Consensus 98 ~~~~~~~~~~~~l~~--G~~~~~~t 120 (197)
T PRK06444 98 ISRDNYLNEINEMFR--GYHFVEMT 120 (197)
T ss_pred CCCHHHHHHHHHHHc--CCEEEEeC
Confidence 778888899999988 77777765
No 174
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.74 E-value=7.1e-07 Score=83.58 Aligned_cols=187 Identities=14% Similarity=0.185 Sum_probs=124.4
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (518)
++|+.||+|.||..|+..|.+.||+|+.||+|+++.+.+. +.|.......++. ...+...
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~-----------~~ga~~a~sl~el---------~~~L~~p 60 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELK-----------DEGATGAASLDEL---------VAKLSAP 60 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHH-----------hcCCccccCHHHH---------HHhcCCC
Confidence 5899999999999999999999999999999999988754 2331111111111 1234555
Q ss_pred CEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhh--hhhccCcCceeeccccc-----ccCC--CCeEEEE
Q 010109 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI--GERTYSKDRIVGAHFFS-----PAHV--MPLLEIV 298 (518)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~l--a~~~~~~~r~ig~hf~~-----P~~~--~~lveiv 298 (518)
-.|-.+||-. ++..+++.++.+.+.++-+++.-..+.--+.+ +..+ .-.|+||+. .++. ....-+|
T Consensus 61 r~vWlMvPag-~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l----~~kgi~flD~GTSGG~~G~~~G~~lMi 135 (300)
T COG1023 61 RIVWLMVPAG-DITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLL----AEKGIHFLDVGTSGGVWGAERGYCLMI 135 (300)
T ss_pred cEEEEEccCC-CchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHH----HhcCCeEEeccCCCCchhhhcCceEEe
Confidence 7788888865 35679999999999998888766544322222 2222 124889874 1111 1223344
Q ss_pred eCCCCcHHHHHHHHHHHHhcCC---cEEEeCC-cccc----hhhhhHHHH---HHHHHHHHHcC---CCHHHHHHHHH
Q 010109 299 RTNQTSPQVIVDLLDIGKKIKK---TPIVVGN-CTGF----AVNRMFFPY---TQAAFLLVERG---TDLYLIDRAIT 362 (518)
Q Consensus 299 ~g~~t~~e~~~~~~~l~~~lGk---~~v~v~d-~~Gf----i~nril~~~---~~Ea~~l~~~G---~~~~~ID~a~~ 362 (518)
.| +.++++.+.++|+.+.- --.+++. ..|. |-|-|=+.+ +.|.+.++++. ++.++|-++++
T Consensus 136 GG---~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~ 210 (300)
T COG1023 136 GG---DEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWN 210 (300)
T ss_pred cC---cHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHh
Confidence 55 78999999999998754 2345554 3454 346555544 57889999875 37778877776
No 175
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.73 E-value=2.9e-08 Score=98.04 Aligned_cols=97 Identities=26% Similarity=0.417 Sum_probs=75.2
Q ss_pred EEEEeC-CcchHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-ccc
Q 010109 150 VAILGG-GLMGSGIATALILSN----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YES 223 (518)
Q Consensus 150 V~VIGa-G~MG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~ 223 (518)
|+|||+ |.||.+++..++..| .+|+++|++++.++.....+++..... ...+++.++| +++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHH
Confidence 689999 999999999999999 799999999988776554433322110 1235666677 688
Q ss_pred ccCCCEEEE--------------ecccChHhHHHHHHHHhhhCCCCcEEEE
Q 010109 224 FKDVDMVIE--------------AIIENVSLKQQIFADLEKYCPPHCILAS 260 (518)
Q Consensus 224 ~~~aDlVIe--------------av~e~~~~k~~v~~~l~~~~~~~~il~s 260 (518)
+++||+||+ .+.++..+++++.+++.+++ ++++++.
T Consensus 68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~ 117 (263)
T cd00650 68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIV 117 (263)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEE
Confidence 999999999 66778889999999999998 5555543
No 176
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.73 E-value=9.1e-09 Score=106.50 Aligned_cols=131 Identities=16% Similarity=0.211 Sum_probs=80.6
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHH----------Hhhhhc-CCCchh-------hh-cccCCCCCchH
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWA----------LDILEH-RRPWVA-------TL-YKTDKIEPLGE 61 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a----------~~l~~~-~~p~~~-------~~-~~~~~~~~~~~ 61 (518)
|+|||++|+|++|+++||||+|||++++.+.+.++. +++... ..++.. .. .....+... .
T Consensus 168 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~-~ 246 (379)
T PLN02874 168 LALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKD-T 246 (379)
T ss_pred HHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCC-C
Confidence 578999999999999999999999988876333321 111100 000000 00 000000000 0
Q ss_pred HHHHHH------------HHHHHHHhhC-CCCCcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Q 010109 62 AREIFK------------FARAQARKQA-PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLR---SETCKSLVHIF 125 (518)
Q Consensus 62 ~~~~~~------------~a~~~~~~~~-~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~---s~~a~~~i~aF 125 (518)
....++ .+.+.++.-. +.+.+...+|++++.+...+++++++.|.+....++. ++++++++++|
T Consensus 247 ~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~Af 326 (379)
T PLN02874 247 VEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRAL 326 (379)
T ss_pred HHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccceE
Confidence 000111 1223333322 3455788899999998888999999999888888877 99999999999
Q ss_pred h-hh-hcCC
Q 010109 126 F-AQ-RGTS 132 (518)
Q Consensus 126 ~-~k-r~~~ 132 (518)
+ .| |.++
T Consensus 327 lidK~r~P~ 335 (379)
T PLN02874 327 VIDKDNAPK 335 (379)
T ss_pred EEcCCCCCC
Confidence 7 66 4443
No 177
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=98.70 E-value=5.5e-08 Score=95.73 Aligned_cols=93 Identities=30% Similarity=0.424 Sum_probs=79.5
Q ss_pred CcccCCCCCHHHHHhCCCcceecCC-chHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (518)
|++||++++|+||+++||||++|++ +++++.|.+++++++.. |
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~~--~---------------------------------- 205 (257)
T COG1024 162 LLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAAP--P---------------------------------- 205 (257)
T ss_pred HHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHccC--H----------------------------------
Confidence 5789999999999999999999985 69999999999998761 2
Q ss_pred CCcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcC
Q 010109 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT 131 (518)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~ 131 (518)
.+...+|+.++.+...++++.+..|...+...+.++++++++.+|.+ |++
T Consensus 206 -~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p 255 (257)
T COG1024 206 -LALAATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RKP 255 (257)
T ss_pred -HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCC
Confidence 13446788888877666899999999999999999999999999998 543
No 178
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.70 E-value=1.7e-07 Score=95.42 Aligned_cols=165 Identities=18% Similarity=0.114 Sum_probs=101.5
Q ss_pred EEEEEeCCcchHHHHHHHHhCC--------CcEEEEeC-----CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccc
Q 010109 149 KVAILGGGLMGSGIATALILSN--------YPVILKEV-----NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL 215 (518)
Q Consensus 149 kV~VIGaG~MG~~iA~~la~~G--------~~V~l~d~-----~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i 215 (518)
||+|||+|.||.+||..++.+| ++|++|.+ +++..+. . +.. .+..+..+. -...+++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~-i---n~~----~~n~~ylpg--i~Lp~~i 70 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEI-I---NTT----HENVKYLPG--IKLPANL 70 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHH-H---Hhc----CCCccccCC--CcCCCCe
Confidence 6999999999999999999999 99999998 3333222 1 111 000000000 0123456
Q ss_pred ccccCcc-cccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchh--------hh-hhhccCcCceeeccc
Q 010109 216 TGVLDYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--------LI-GERTYSKDRIVGAHF 285 (518)
Q Consensus 216 ~~~~~~~-~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~--------~l-a~~~~~~~r~ig~hf 285 (518)
..++|++ .+++||+||.|||.+ .-+.++.++.++++++.+++|.+-++..+ ++ .+.+..+ +. .
T Consensus 71 ~at~dl~eal~~ADiIIlAVPs~--~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~--~~---~ 143 (342)
T TIGR03376 71 VAVPDLVEAAKGADILVFVIPHQ--FLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIP--CG---V 143 (342)
T ss_pred EEECCHHHHHhcCCEEEEECChH--HHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCC--eE---E
Confidence 6777875 579999999999976 45788999999998888888887776554 22 1222111 11 1
Q ss_pred cc-cc------CCCCeEEEEeCCCCc--HHHHHHHHHHHHhcCCcEEEeCCccc
Q 010109 286 FS-PA------HVMPLLEIVRTNQTS--PQVIVDLLDIGKKIKKTPIVVGNCTG 330 (518)
Q Consensus 286 ~~-P~------~~~~lveiv~g~~t~--~e~~~~~~~l~~~lGk~~v~v~d~~G 330 (518)
.+ |. ...|...++.+...+ .+....++.++..--..+....|..|
T Consensus 144 lsGP~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~G 197 (342)
T TIGR03376 144 LSGANLANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAG 197 (342)
T ss_pred eeCcchHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCccc
Confidence 11 22 123334444553222 67788888888754445555556544
No 179
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.68 E-value=2e-07 Score=94.57 Aligned_cols=172 Identities=10% Similarity=0.106 Sum_probs=103.1
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHhhhcccccccCccccc
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM-TQEKFEKTISLLTGVLDYESFK 225 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~ 225 (518)
.+||+|||+|.||+.+|..|+++|++|+++.+++. +... +.|.. ....-......+...++.+...
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVR-----------ENGLQVDSVHGDFHLPPVQAYRSAEDMP 71 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHH-----------hCCeEEEeCCCCeeecCceEEcchhhcC
Confidence 46899999999999999999999999999999853 2111 11210 0000000001122233444567
Q ss_pred CCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchh-hhhhhccCcCceee-cccc-----cccC---C-CCe
Q 010109 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIVG-AHFF-----SPAH---V-MPL 294 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~-~la~~~~~~~r~ig-~hf~-----~P~~---~-~~l 294 (518)
.+|+||.|++... + .+++..+.+.+.+++++++-.-++... .+...++ +.++++ ..++ .|.. . ..-
T Consensus 72 ~~D~vilavK~~~-~-~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~-~~~v~~g~~~~~a~~~~pg~v~~~~~g~ 148 (313)
T PRK06249 72 PCDWVLVGLKTTA-N-ALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILP-AEHLLGGLCFICSNRVGPGVIHHLAYGR 148 (313)
T ss_pred CCCEEEEEecCCC-h-HhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCC-CCcEEEEeeeEeEecCCCeEEEECCCCc
Confidence 8999999998653 2 467888888888888887777777654 4444443 234443 3322 2321 1 111
Q ss_pred EEEEeCCCCc-----HHHHHHHHHHHHhcCCcEEEeCCcccchhh
Q 010109 295 LEIVRTNQTS-----PQVIVDLLDIGKKIKKTPIVVGNCTGFAVN 334 (518)
Q Consensus 295 veiv~g~~t~-----~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~n 334 (518)
+.+-.....+ .+.++.+..+++..|..+.+..|....+..
T Consensus 149 ~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~ 193 (313)
T PRK06249 149 VNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQ 193 (313)
T ss_pred EEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHh
Confidence 2221111222 456677888888888877777775554433
No 180
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=98.66 E-value=5.7e-08 Score=91.59 Aligned_cols=105 Identities=26% Similarity=0.318 Sum_probs=74.4
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCC---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN---EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE- 222 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 222 (518)
.||+|||+|.||+.||..|+++|+ +|+++|.+ ++.+.+-.- .. -..|....+.+.+.+.++.+..+.+
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~-~~------~~iG~~Ka~~~~~~l~~inp~~~i~~ 94 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQY-KA------SQVGEPKTEALKENISEINPYTEIEA 94 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccC-Ch------hhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 589999999999999999999999 69999999 666654110 00 0123322333344444443333222
Q ss_pred ------------cccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEE
Q 010109 223 ------------SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (518)
Q Consensus 223 ------------~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~s 260 (518)
.++++|+||+| .++++.|..+++++....+...+++.
T Consensus 95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~ 143 (200)
T TIGR02354 95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA 143 (200)
T ss_pred eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 36789999999 69999999999999988877776653
No 181
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.65 E-value=1.9e-07 Score=95.75 Aligned_cols=168 Identities=15% Similarity=0.080 Sum_probs=103.1
Q ss_pred eEEEEEeCCcchHHHHHHHHhCC-------CcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccc
Q 010109 148 KKVAILGGGLMGSGIATALILSN-------YPVILKEVNEKF-LEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGV 218 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G-------~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~ 218 (518)
+||+|||+|.||++||..++.+| ++|.+|.++++. -+...+.++. ...... +.. -...+++..+
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~----~~~N~~ylp~---~~Lp~ni~~t 84 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINT----KHENVKYLPG---IKLPDNIVAV 84 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHh----cCCCcccCCC---CcCCCceEEe
Confidence 68999999999999999999998 899999999862 1111111111 000000 100 0123567777
Q ss_pred cCcc-cccCCCEEEEecccChHhHHHHHHHHhh--hCCCCcEEEEcCCCcchh--------hhh-hhccCcCceeecccc
Q 010109 219 LDYE-SFKDVDMVIEAIIENVSLKQQIFADLEK--YCPPHCILASNTSTIDLN--------LIG-ERTYSKDRIVGAHFF 286 (518)
Q Consensus 219 ~~~~-~~~~aDlVIeav~e~~~~k~~v~~~l~~--~~~~~~il~sntS~l~i~--------~la-~~~~~~~r~ig~hf~ 286 (518)
+|++ .+++||+||.|||.. .-+++++++.+ .++++++++|.+-++.++ ++. +.+.. ++.- ..
T Consensus 85 sdl~eav~~aDiIvlAVPsq--~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~--~~~~--Ls 158 (365)
T PTZ00345 85 SDLKEAVEDADLLIFVIPHQ--FLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI--PCCA--LS 158 (365)
T ss_pred cCHHHHHhcCCEEEEEcChH--HHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC--CeEE--EE
Confidence 7874 589999999999865 46788999988 777787888776665533 222 22221 1110 11
Q ss_pred ccc------CCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCcEEEeCCccc
Q 010109 287 SPA------HVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (518)
Q Consensus 287 ~P~------~~~~lveiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G 330 (518)
.|- ...|...++.+ .+.+....++.+|..--..+....|..|
T Consensus 159 GPs~A~Eva~~~pt~~vias--~~~~~a~~~~~lf~~~~frvy~s~Dv~G 206 (365)
T PTZ00345 159 GANVANDVAREEFSEATIGC--EDKDDALIWQRLFDRPYFKINCVPDVIG 206 (365)
T ss_pred CCCHHHHHHcCCCcEEEEEe--CCHHHHHHHHHHhCCCcEEEEEcCCccc
Confidence 231 12343444454 3677777788888765555555556544
No 182
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.64 E-value=1.2e-06 Score=85.62 Aligned_cols=167 Identities=16% Similarity=0.134 Sum_probs=115.4
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccCCCEEEEecccChHhHHHHHHHH
Q 010109 170 NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADL 248 (518)
Q Consensus 170 G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l 248 (518)
-++|++++|++++++...+. .| +..+.+. +.+.+||+||.||+ +..-.+++.++
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~----------~g-------------~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l 63 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKE----------LG-------------IVASSDAQEAVKEADVVFLAVK--PQDLEEVLSEL 63 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHH----------cC-------------cEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHH
Confidence 36899999999887653211 11 1122333 44688999999998 44557888888
Q ss_pred hhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEEE-eCCCCcHHHHHHHHHHHHhcCCcEEEeCC
Q 010109 249 EKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV-RTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (518)
Q Consensus 249 ~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv-~g~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (518)
...+.++.+|+|.+++++++.|...++...+++.++|+.|+.....+..+ .+...+++..+.+..+|..+|....+ .+
T Consensus 64 ~~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v-~E 142 (245)
T TIGR00112 64 KSEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVEL-PE 142 (245)
T ss_pred hhhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEE-CH
Confidence 87777788999999999999999888654579999999888776655544 67778888899999999999976644 32
Q ss_pred c--ccch-hhhh---HHHHHHHHH--HHHHcCCCHHHHHHHHH
Q 010109 328 C--TGFA-VNRM---FFPYTQAAF--LLVERGTDLYLIDRAIT 362 (518)
Q Consensus 328 ~--~Gfi-~nri---l~~~~~Ea~--~l~~~G~~~~~ID~a~~ 362 (518)
. ..+. ..-. +..++.|++ ..+..|+++++-.+...
T Consensus 143 ~~~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~ 185 (245)
T TIGR00112 143 ALMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELAA 185 (245)
T ss_pred HHcchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1 1111 0101 112233433 34567999888887765
No 183
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=98.58 E-value=4.2e-08 Score=89.87 Aligned_cols=91 Identities=21% Similarity=0.324 Sum_probs=66.4
Q ss_pred cccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCCC
Q 010109 2 MLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLT 81 (518)
Q Consensus 2 iltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 81 (518)
.+.+|..+|+||+++||||.|||.++|++.+.+||+++.+++ |
T Consensus 181 wfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kS-P------------------------------------ 223 (282)
T COG0447 181 WFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKS-P------------------------------------ 223 (282)
T ss_pred hhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcC-h------------------------------------
Confidence 457899999999999999999999999999999999998863 3
Q ss_pred cHHHHHHHHHHhhhCChHHHHHHHH----HHHHHHhCCHHHHHHHHHHhhhhcCCC
Q 010109 82 HPIVCIDVVEAGVVSGPRAGLQKEA----EDFQKLLRSETCKSLVHIFFAQRGTSK 133 (518)
Q Consensus 82 A~~~~~~~i~~~~~~~~~~~l~~E~----~~f~~l~~s~~a~~~i~aF~~kr~~~k 133 (518)
.++++++.+...+- ++++--. ++-.-...++|+++++.+|.+||.+..
T Consensus 224 ---~AlR~LK~Afnad~-DGlaG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pdf 275 (282)
T COG0447 224 ---TALRMLKAAFNADC-DGLAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPDF 275 (282)
T ss_pred ---HHHHHHHHHhcCCC-chhhHHHHhcccceEEEEechhhhhhHHHHhhccCCCh
Confidence 13445555544332 2222111 111224579999999999999998743
No 184
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.57 E-value=2.4e-07 Score=94.19 Aligned_cols=100 Identities=16% Similarity=0.042 Sum_probs=77.1
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (518)
++|||||+|.||+++|..+...|++|++||++++..... +..+.++ +.+++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~ 198 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKD 198 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhc
Confidence 489999999999999999999999999999997542110 0112334 45789
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCc--chhhhhhhcc
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTY 275 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l--~i~~la~~~~ 275 (518)
||+|+.++|...+.+..+.+++.+.++++++|++.+-+. +-..+.+++.
T Consensus 199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN 249 (330)
T ss_pred CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence 999999999998887777788888999999887655443 4446666664
No 185
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.50 E-value=1e-07 Score=95.09 Aligned_cols=55 Identities=11% Similarity=-0.072 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhccccCccccccccccccccCchhhHHHHHHHHHhh
Q 010109 460 TLRLLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 516 (518)
Q Consensus 460 ~~~~i~~r~~~~~~nea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (518)
+...|.+|++.+++|||++|+++|+++++||| .++++|+|||+|||+++|.+|-.
T Consensus 184 ~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD--~~~~~g~g~p~Gp~~~~D~~Gl~ 238 (282)
T PRK05808 184 APGFVVNRILIPMINEAIFVLAEGVATAEDID--EGMKLGCNHPIGPLALADLIGLD 238 (282)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhCCCCHHHHH--HHHHhCCCCCCCHHHHHHHhhhH
Confidence 56789999999999999999999999999999 99999999999999999999854
No 186
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.50 E-value=8.2e-07 Score=78.99 Aligned_cols=104 Identities=27% Similarity=0.362 Sum_probs=68.3
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 010109 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (518)
+||+|||+ |..|+.+|..+...++ ++.++|++++.++.-...++...... + ........+++++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~---~----------~~~~i~~~~~~~~ 67 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPL---P----------SPVRITSGDYEAL 67 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGS---T----------EEEEEEESSGGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhc---c----------ccccccccccccc
Confidence 59999999 9999999999999876 89999999986655333332221100 0 0112223678999
Q ss_pred cCCCEEEEeccc--------------ChHhHHHHHHHHhhhCCCCcEEEEcCCCc
Q 010109 225 KDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNTSTI 265 (518)
Q Consensus 225 ~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (518)
++||+||.+.-. +..+-+++..++.+.+ ++++++..|...
T Consensus 68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNPv 121 (141)
T PF00056_consen 68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNPV 121 (141)
T ss_dssp TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSSH
T ss_pred ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCcH
Confidence 999999988722 2224445556677777 556655554444
No 187
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.47 E-value=1.5e-07 Score=86.14 Aligned_cols=96 Identities=23% Similarity=0.320 Sum_probs=83.2
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCc----hHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhh
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPN----QLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQ 76 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~----~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 76 (518)
+|+||+.+++.||..+||||+||..+ .....|+++|+++..+. |
T Consensus 188 LIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~g-P------------------------------- 235 (291)
T KOG1679|consen 188 LIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQG-P------------------------------- 235 (291)
T ss_pred HhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCC-c-------------------------------
Confidence 58999999999999999999999765 56666788888776542 3
Q ss_pred CCCCCcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 77 APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 77 ~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
.|...+|-+|+.+.+.++..+|..|..-+++...+.+--+++.+|.+||.+.
T Consensus 236 ----iavr~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~ 287 (291)
T KOG1679|consen 236 ----IAVRLAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPE 287 (291)
T ss_pred ----hhhhHHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCC
Confidence 3566788999999999999999999999999999999999999999988765
No 188
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.43 E-value=1e-05 Score=81.41 Aligned_cols=166 Identities=16% Similarity=0.131 Sum_probs=102.9
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (518)
+||.|+|+|.||+-++..|+++|++|+++-|++. +++.. +.|..-...............+.+.+..+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~-----------~~GL~i~~~~~~~~~~~~~~~~~~~~~~~ 68 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALK-----------KKGLRIEDEGGNFTTPVVAATDAEALGPA 68 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHH-----------hCCeEEecCCCccccccccccChhhcCCC
Confidence 5899999999999999999999999999988875 55432 22321111000011112223334567799
Q ss_pred CEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhh-hhhhccCcCceeecccccccCCC---------CeEEE
Q 010109 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL-IGERTYSKDRIVGAHFFSPAHVM---------PLLEI 297 (518)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~-la~~~~~~~r~ig~hf~~P~~~~---------~lvei 297 (518)
|+||.++..- .-.+++..+.+.++++++|.+.--++...+ +.....+..-+.|+-+..-.... .-+.+
T Consensus 69 Dlviv~vKa~--q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~i 146 (307)
T COG1893 69 DLVIVTVKAY--QLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVI 146 (307)
T ss_pred CEEEEEeccc--cHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEE
Confidence 9999999543 346889999999999998887777776544 55544333234444443211111 11122
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCcEEEeCC
Q 010109 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (518)
Q Consensus 298 v~g~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (518)
-......++..+.+.+.++..|....+..|
T Consensus 147 g~~~~~~~~~~~~i~~~~~~a~~~~~~~~d 176 (307)
T COG1893 147 GELRGGRDELVKALAELFKEAGLEVELHPD 176 (307)
T ss_pred ccCCCCchHHHHHHHHHHHhCCCCeEEcHH
Confidence 222223346777788888777776665554
No 189
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=98.43 E-value=6e-07 Score=81.51 Aligned_cols=96 Identities=21% Similarity=0.291 Sum_probs=76.1
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|++||.||++++|+.-|||.+|||+++|.-++..++..+-..++ ..+.
T Consensus 188 ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~sr-------------------av~s------------- 235 (287)
T KOG1682|consen 188 MLMTGLPITGEEALISGLVSKVVPAEELDKEIEEITNAIKAKSR-------------------AVIS------------- 235 (287)
T ss_pred HHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHH-------------------HHHH-------------
Confidence 68899999999999999999999999999999999887755321 0111
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhcCC
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~~~ 132 (518)
..|+-.+....++..+++..-.+...+-+.-.+++++|.+||+||.+.
T Consensus 236 ----lgk~f~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~ 283 (287)
T KOG1682|consen 236 ----LGKEFYYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPN 283 (287)
T ss_pred ----HHHHHHHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCC
Confidence 234555555566777777777888888888899999999999988753
No 190
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=98.42 E-value=4.5e-07 Score=90.64 Aligned_cols=81 Identities=23% Similarity=0.268 Sum_probs=68.2
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+|||++++|+||+++||||+|||++++.+.+.+++++++..+ |
T Consensus 180 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 223 (288)
T PRK08290 180 LLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMP-P----------------------------------- 223 (288)
T ss_pred HHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhC-ChHHHHHHHHHHHHHHh-CCHH
Q 010109 81 THPIVCIDVVEAGVVS-GPRAGLQKEAEDFQKLL-RSET 117 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~-~~~~~l~~E~~~f~~l~-~s~~ 117 (518)
.+...+|+.++..... ++++++..|...+...+ ++++
T Consensus 224 ~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (288)
T PRK08290 224 FGLRLTKRAVNQTLDAQGFRAALDAVFDLHQLGHAHNAE 262 (288)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHccccchh
Confidence 1444678888877664 68999999999888887 6665
No 191
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.37 E-value=9.3e-07 Score=89.28 Aligned_cols=101 Identities=23% Similarity=0.285 Sum_probs=67.6
Q ss_pred eEEEEEeCCcchHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 010109 148 KKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (518)
+||+|||+|.+|+.+|..++..| ++|+++|++++.++.....+.+.... .+. ...+ .+.++++++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~---~~~---------~~~i-~~~~~~~l~ 67 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAF---LPS---------PVKI-KAGDYSDCK 67 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhc---cCC---------CeEE-EcCCHHHhC
Confidence 48999999999999999999999 58999999998876544333222100 000 0012 235677899
Q ss_pred CCCEEEEeccc--------------ChHhHHHHHHHHhhhCCCCcEEEEcC
Q 010109 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNT 262 (518)
Q Consensus 226 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~snt 262 (518)
+||+||.++.. +..+-+++..++.++++ +++++..|
T Consensus 68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~vivvs 117 (306)
T cd05291 68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFLVAS 117 (306)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEec
Confidence 99999999843 22344556667777765 55544333
No 192
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.37 E-value=1.1e-05 Score=76.34 Aligned_cols=147 Identities=16% Similarity=0.157 Sum_probs=100.1
Q ss_pred hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEecccCh
Q 010109 159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENV 238 (518)
Q Consensus 159 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~~ 238 (518)
|+.+|..|+.+||+|++.|.|.+-.+.. .+++..+.|. -..++|.++++.+.+.|.-.|=..
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~------~w~~vedAGV------------~vv~dD~eaa~~~Ei~VLFTPFGk 94 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDE------HWKRVEDAGV------------EVVSDDAEAAEHGEIHVLFTPFGK 94 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHH------HHHHHHhcCc------------EEecCchhhhhcceEEEEecccch
Confidence 7899999999999999999998766542 1222222331 113456688999999998887442
Q ss_pred HhHHHHHHHHhhhCCCCcEEEEcCCCcchh----hhhhhccCcCceeecccccccCC-----CCeEEEEeCCC------C
Q 010109 239 SLKQQIFADLEKYCPPHCILASNTSTIDLN----LIGERTYSKDRIVGAHFFSPAHV-----MPLLEIVRTNQ------T 303 (518)
Q Consensus 239 ~~k~~v~~~l~~~~~~~~il~sntS~l~i~----~la~~~~~~~r~ig~hf~~P~~~-----~~lveiv~g~~------t 303 (518)
.--.+.++|.++++.+++|+ ||.|.|+- .+...+..+.+-+|...|.|+.. .... ++.+.. .
T Consensus 95 -~T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~y-viagr~t~g~elA 171 (340)
T COG4007 95 -ATFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHY-VIAGRSTEGKELA 171 (340)
T ss_pred -hhHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceE-EEeccCCCceeec
Confidence 12366788999999999886 56565544 34444555656778777766432 1122 333322 3
Q ss_pred cHHHHHHHHHHHHhcCCcEEEeC
Q 010109 304 SPQVIVDLLDIGKKIKKTPIVVG 326 (518)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v~ 326 (518)
+++.+++..++++..||.+.++.
T Consensus 172 TeEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 172 TEEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred cHHHHHHHHHHHHhcCCceEecC
Confidence 57889999999999999999886
No 193
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.37 E-value=2.1e-07 Score=93.14 Aligned_cols=52 Identities=15% Similarity=-0.006 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCccccccccccccccCchhhHHHHHHHHHhh
Q 010109 463 LLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 516 (518)
Q Consensus 463 ~i~~r~~~~~~nea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (518)
=+.||++.+++|||++|+++|+++++||| .++++++|||+|||+++|.+|-.
T Consensus 186 f~~nRl~~~~~~ea~~~~~~gv~~~~~iD--~~~~~g~g~p~Gp~~~~D~~Gl~ 237 (288)
T PRK09260 186 FVTSRISALVGNEAFYMLQEGVATAEDID--KAIRLGLNFPMGPLELGDLVGLD 237 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHHhCCCCCCCHHHHHHHhhHH
Confidence 48999999999999999999999999999 99999999999999999999854
No 194
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.37 E-value=1.7e-07 Score=93.16 Aligned_cols=51 Identities=6% Similarity=-0.161 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCccccccccccccccCchhhHHHHHHHHHh
Q 010109 463 LLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELAR 515 (518)
Q Consensus 463 ~i~~r~~~~~~nea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 515 (518)
=|.||++.+++|||++++++|++++++|| ..|++++|||||||++.|.+|-
T Consensus 187 Fi~NRil~~~~~eA~~l~~eGva~~e~ID--~~~~~~~G~pmGpf~l~D~~Gl 237 (307)
T COG1250 187 FIVNRLLAALLNEAIRLLEEGVATPEEID--AAMRQGLGLPMGPFELADLIGL 237 (307)
T ss_pred eehHhHHHHHHHHHHHHHHhCCCCHHHHH--HHHHhccCCCccHHHHHHHHhH
Confidence 38999999999999999999999999999 9999999999999999999984
No 195
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.36 E-value=2e-07 Score=93.35 Aligned_cols=54 Identities=6% Similarity=-0.199 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCccccccccccccccCchhhHHHHHHHHHhh
Q 010109 461 LRLLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 516 (518)
Q Consensus 461 ~~~i~~r~~~~~~nea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (518)
..-|.||++.+++|||++++++|++|++||| .+++.++|||+|||+++|.+|-+
T Consensus 188 pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD--~a~~~~~g~~~Gp~~~~D~~Gld 241 (287)
T PRK08293 188 PGYILNSLLVPFLSAALALWAKGVADPETID--KTWMIATGAPMGPFGILDIVGLD 241 (287)
T ss_pred CCHhHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHHhccCCCcCHHHHHHHhchH
Confidence 4569999999999999999999999999999 99889999999999999999854
No 196
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.36 E-value=4e-06 Score=84.67 Aligned_cols=176 Identities=14% Similarity=0.034 Sum_probs=101.6
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccCcccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~ 226 (518)
+||+|||+|.||+-+|..|+++|++|++++++.+.++...+ +.|. +.... ....-.+.. .+.+....
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~----------~~Gl~i~~~g-~~~~~~~~~-~~~~~~~~ 70 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQ----------AGGLTLVEQG-QASLYAIPA-ETADAAEP 70 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhh----------cCCeEEeeCC-cceeeccCC-CCcccccc
Confidence 58999999999999999999999999999998776664321 0111 10000 000001111 11233568
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchh-hhhhhccCcCceeecccc-----cccCC--CCeEEEE
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIVGAHFF-----SPAHV--MPLLEIV 298 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~-~la~~~~~~~r~ig~hf~-----~P~~~--~~lveiv 298 (518)
+|+||.|+... ++ .+.++.+.+.+.+++++++-..++... .+...+....-+.|..++ .|-.. ...-.+.
T Consensus 71 ~D~viv~vK~~-~~-~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~ 148 (305)
T PRK05708 71 IHRLLLACKAY-DA-EPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTW 148 (305)
T ss_pred cCEEEEECCHH-hH-HHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEE
Confidence 99999999654 23 467888999999999888888887664 455554332223333332 23211 0010111
Q ss_pred eCCCCcHHHHHHHHHHHHhcCCcEEEeCCcccchhhhhHH
Q 010109 299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFF 338 (518)
Q Consensus 299 ~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nril~ 338 (518)
-|.. +.+..+.+.+++...|....+..|..+.+.+.++.
T Consensus 149 ~G~~-~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~ 187 (305)
T PRK05708 149 LGDP-RNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLAL 187 (305)
T ss_pred EcCC-CCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Confidence 2221 12334556667777776555555655555554443
No 197
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.36 E-value=2e-07 Score=93.05 Aligned_cols=52 Identities=4% Similarity=-0.221 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCccccccccccccccCchhhHHHHHHHHHhh
Q 010109 463 LLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 516 (518)
Q Consensus 463 ~i~~r~~~~~~nea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (518)
=|.||++.+++|||++|+++|++|++||| .+++.++|||+|||+++|.+|-+
T Consensus 191 fi~nRi~~~~~~Ea~~ll~eGv~~~~dID--~~~~~g~G~p~Gpf~~~D~~Gld 242 (286)
T PRK07819 191 FVVNALLVPYLLSAIRMVESGFATAEDID--KAMVLGCAHPMGPLRLSDLVGLD 242 (286)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCHHHHH--HHHHhCCCCCCCHHHHHHHhccH
Confidence 38999999999999999999999999999 99999999999999999999854
No 198
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.34 E-value=3.8e-06 Score=83.62 Aligned_cols=178 Identities=18% Similarity=0.210 Sum_probs=101.9
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (518)
++|+|||.|.||.++|..|...|++|+++++.....+.+. ..|. ...+-.+.++.|
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~-----------~~G~-------------~v~sl~Eaak~A 72 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAK-----------ADGF-------------EVMSVSEAVRTA 72 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHH-----------HcCC-------------EECCHHHHHhcC
Confidence 6899999999999999999999999999987643322211 1121 111122557899
Q ss_pred CEEEEecccChHhHHHHH-HHHhhhCCCCcEEEEcCCCcchhhhhhhccCcC--ceeecccccccC----------CCC-
Q 010109 228 DMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTIDLNLIGERTYSKD--RIVGAHFFSPAH----------VMP- 293 (518)
Q Consensus 228 DlVIeav~e~~~~k~~v~-~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~--r~ig~hf~~P~~----------~~~- 293 (518)
|+|+.++|. .+.+ .++ .++.+.++++++|+- +-+..|.- ..+..|. .++=+-|-.|-+ ..|
T Consensus 73 DVV~llLPd-~~t~-~V~~~eil~~MK~GaiL~f-~hgfni~~--~~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~ 147 (335)
T PRK13403 73 QVVQMLLPD-EQQA-HVYKAEVEENLREGQMLLF-SHGFNIHF--GQINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPA 147 (335)
T ss_pred CEEEEeCCC-hHHH-HHHHHHHHhcCCCCCEEEE-CCCcceec--CceeCCCCCeEEEECCCCCChHHHHHHHcCCCcee
Confidence 999999996 4444 555 578889999997753 33444421 1111122 111111222211 112
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCcE--EE-eC--C--cccchhhh-hHH----HHHHHHH-HHHHcCCCHHH
Q 010109 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTP--IV-VG--N--CTGFAVNR-MFF----PYTQAAF-LLVERGTDLYL 356 (518)
Q Consensus 294 lveiv~g~~t~~e~~~~~~~l~~~lGk~~--v~-v~--d--~~Gfi~nr-il~----~~~~Ea~-~l~~~G~~~~~ 356 (518)
|+.|-.. .+-.+.+.+..+...+|.+. +. .. + ....+..+ +|+ .++..++ .|++.|.+|+.
T Consensus 148 l~av~qd--~sg~a~~~ala~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~ 221 (335)
T PRK13403 148 LVAVHQD--ATGTALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEI 221 (335)
T ss_pred EEEEEEC--CCCcHHHHHHHHHHHcCCCceeEEecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 3334333 33446788888899998663 22 21 1 11223332 333 2344444 35677887764
No 199
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=98.33 E-value=5.2e-07 Score=87.22 Aligned_cols=73 Identities=25% Similarity=0.326 Sum_probs=61.2
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+++|++++|+||+++||||+|+|++++.+.|.+++++++..+ |
T Consensus 156 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 199 (229)
T PRK06213 156 AVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLN-M----------------------------------- 199 (229)
T ss_pred HHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHH
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDF 109 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f 109 (518)
.+...+|+.++.....+++++++.|.+.|
T Consensus 200 ~a~~~~K~~l~~~~~~~l~~~~~~~~~~~ 228 (229)
T PRK06213 200 GAHAATKLKVRAAALEAIRAAIEGDAAEF 228 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhhhhhhc
Confidence 24446788888877777888888887765
No 200
>PRK15076 alpha-galactosidase; Provisional
Probab=98.32 E-value=2.4e-06 Score=89.96 Aligned_cols=77 Identities=23% Similarity=0.300 Sum_probs=55.1
Q ss_pred ceEEEEEeCCcchHHHHH--HHH----hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 010109 147 VKKVAILGGGLMGSGIAT--ALI----LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~--~la----~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (518)
++||+|||+|.||...+. .++ ..|.+|+++|+++++++.+...++..+... + ...+++.++|
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~---------~~~~i~~ttD 68 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---G---------ASAKITATTD 68 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C---------CCeEEEEECC
Confidence 369999999999966555 333 346799999999999886554444443221 1 1135777888
Q ss_pred -cccccCCCEEEEecc
Q 010109 221 -YESFKDVDMVIEAII 235 (518)
Q Consensus 221 -~~~~~~aDlVIeav~ 235 (518)
.+++++||+||+++-
T Consensus 69 ~~eal~dADfVv~ti~ 84 (431)
T PRK15076 69 RREALQGADYVINAIQ 84 (431)
T ss_pred HHHHhCCCCEEeEeee
Confidence 578999999999984
No 201
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.32 E-value=2.3e-07 Score=92.22 Aligned_cols=77 Identities=18% Similarity=0.207 Sum_probs=68.7
Q ss_pred ccchhhhhHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---cHHHHhhhcCchhHHHhhhhhhhhCCCCCccccH
Q 010109 329 TGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMI 402 (518)
Q Consensus 329 ~Gfi~nril~~~~~Ea~~l~~~G~--~~~~ID~a~~-~~G~p~---GPf~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~~ 402 (518)
+--++++++.+++||++++++||+ ++.++|.+.. |+|||. |||.|.|..|++.++..++.+.. +.|+.+
T Consensus 293 ~ed~v~~~~~p~VnEal~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~-----f~P~~~ 367 (380)
T KOG1683|consen 293 DEDFVEFLLSPFVNEALRCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS-----FEPCQL 367 (380)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc-----CCHHHH
Confidence 345899999999999999999997 9999999988 999994 99999999999999999988765 678888
Q ss_pred HHHHHHCC
Q 010109 403 IPIMQEDK 410 (518)
Q Consensus 403 l~~lv~~G 410 (518)
+..+..+|
T Consensus 368 l~~~a~~~ 375 (380)
T KOG1683|consen 368 LKDHAKSG 375 (380)
T ss_pred HHHHHhhh
Confidence 88887763
No 202
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.31 E-value=3.2e-07 Score=92.06 Aligned_cols=51 Identities=6% Similarity=-0.138 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHhhccccCccccccccccccccCchhhHHHHHHHHHhh
Q 010109 464 LWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 516 (518)
Q Consensus 464 i~~r~~~~~~nea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (518)
+.+|++.+++|||++++++|++|++||| .+++.++|||+|||+|+|.+|-.
T Consensus 191 v~nRl~~~~~~ea~~~~~~g~a~~~~iD--~~~~~~~g~~~Gp~~~~D~~Gl~ 241 (291)
T PRK06035 191 FTTRFIEGWLLEAIRSFEIGIATIKDID--EMCKLAFGFPMGPFELMDIIGID 241 (291)
T ss_pred eHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHhhcCCCccCHHHHHHHhhHH
Confidence 7899999999999999999999999999 98889999999999999999854
No 203
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.29 E-value=3.9e-06 Score=85.63 Aligned_cols=101 Identities=19% Similarity=0.141 Sum_probs=73.8
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (518)
++|||||.|.||+.+|..+...|++|..||+++..... . ..| ... .++ +.+++
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~-~-----------~~~-------------~~~-~~l~ell~~ 204 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAE-K-----------ELG-------------AEY-RPLEELLRE 204 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhH-H-----------HcC-------------CEe-cCHHHHHhh
Confidence 69999999999999999999999999999998643211 0 011 011 233 44789
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCc---chhhhhhhcc
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI---DLNLIGERTY 275 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l---~i~~la~~~~ 275 (518)
||+|+.++|-..+.+.-+-++..+.++++++++ |+|.- +-..+.+.+.
T Consensus 205 aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lI-N~aRg~~vd~~aL~~aL~ 255 (333)
T PRK13243 205 SDFVSLHVPLTKETYHMINEERLKLMKPTAILV-NTARGKVVDTKALVKALK 255 (333)
T ss_pred CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-ECcCchhcCHHHHHHHHH
Confidence 999999999988776666677888899999886 45443 3346666663
No 204
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.29 E-value=1.5e-06 Score=78.41 Aligned_cols=118 Identities=14% Similarity=0.077 Sum_probs=71.0
Q ss_pred eEEEEEeCCcchHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (518)
++|+|||+|.||..++..++..| ++|+++|++++..+...+.+.. .+ + .....+..+.+++
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-------~~-~----------~~~~~~~~~~~~~ 81 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-------LG-I----------AIAYLDLEELLAE 81 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-------cc-c----------ceeecchhhcccc
Confidence 58999999999999999999986 7899999999877654322110 00 0 0011111233789
Q ss_pred CCEEEEecccChH-hHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhcc-CcCceeeccc
Q 010109 227 VDMVIEAIIENVS-LKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTY-SKDRIVGAHF 285 (518)
Q Consensus 227 aDlVIeav~e~~~-~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~-~~~r~ig~hf 285 (518)
+|+||.|+|.... +....+. ...+++++++++.++....+.+.+... ...+++..|.
T Consensus 82 ~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g~~ 140 (155)
T cd01065 82 ADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDGLE 140 (155)
T ss_pred CCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCCHH
Confidence 9999999988753 1111221 123577887766554433334444432 2234444443
No 205
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.29 E-value=1.9e-06 Score=86.93 Aligned_cols=98 Identities=23% Similarity=0.333 Sum_probs=65.3
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 010109 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (518)
.||+|||+|.+|+.+|..++..|. ++.|+|++++.++.....+.... ... ....+..++++++++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~------~~~-------~~~~v~~~~dy~~~~ 70 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGS------AFL-------KNPKIEADKDYSVTA 70 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhh------ccC-------CCCEEEECCCHHHhC
Confidence 499999999999999999998886 79999999876554332222111 000 012455567899999
Q ss_pred CCCEEEEeccc--------------ChHhHHHHHHHHhhhCCCCcEEE
Q 010109 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (518)
Q Consensus 226 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~ 259 (518)
+||+||.+.-. +..+-+++..++.++++ +++++
T Consensus 71 ~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p-~~~vi 117 (312)
T cd05293 71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSP-NAILL 117 (312)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEE
Confidence 99999986621 11233455566777754 44443
No 206
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.26 E-value=1.2e-05 Score=71.82 Aligned_cols=93 Identities=19% Similarity=0.246 Sum_probs=62.9
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (518)
++|+|||.|..|.+.|.+|..+|++|++..+..+ ..+++. +.|. ...+-.++++.
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~-----------~~Gf-------------~v~~~~eAv~~ 60 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAK-----------ADGF-------------EVMSVAEAVKK 60 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHH-----------HTT--------------ECCEHHHHHHC
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHH-----------HCCC-------------eeccHHHHHhh
Confidence 6899999999999999999999999999998876 333332 3341 12222366899
Q ss_pred CCEEEEecccChHhHHHHH-HHHhhhCCCCcEEEEcCCCcch
Q 010109 227 VDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTIDL 267 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~-~~l~~~~~~~~il~sntS~l~i 267 (518)
+|+|+..+|+. +-.+++ ++|.+.++++..|.- +.++.+
T Consensus 61 aDvV~~L~PD~--~q~~vy~~~I~p~l~~G~~L~f-ahGfni 99 (165)
T PF07991_consen 61 ADVVMLLLPDE--VQPEVYEEEIAPNLKPGATLVF-AHGFNI 99 (165)
T ss_dssp -SEEEE-S-HH--HHHHHHHHHHHHHS-TT-EEEE-SSSHHH
T ss_pred CCEEEEeCChH--HHHHHHHHHHHhhCCCCCEEEe-CCcchh
Confidence 99999999865 346777 789999999998754 445544
No 207
>PRK08788 enoyl-CoA hydratase; Validated
Probab=98.26 E-value=3.4e-06 Score=83.96 Aligned_cols=90 Identities=16% Similarity=0.061 Sum_probs=70.2
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|++||++++|+||+++||||+|||++++.+.+.+++++++.. |.
T Consensus 185 llltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~--~~---------------------------------- 228 (287)
T PRK08788 185 LILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK--LN---------------------------------- 228 (287)
T ss_pred HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC--cc----------------------------------
Confidence 578999999999999999999999999999999999998863 21
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCH-HHHHHHHHHhh
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSE-TCKSLVHIFFA 127 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~-~a~~~i~aF~~ 127 (518)
++..+++..+.....++++.++.|..++..++++. ..++-+..|..
T Consensus 229 -~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (287)
T PRK08788 229 -GWRAMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLVR 275 (287)
T ss_pred -HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 23345555555555678899999988888766654 45666777764
No 208
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.25 E-value=1.6e-06 Score=89.97 Aligned_cols=88 Identities=14% Similarity=0.253 Sum_probs=70.2
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|+|||++++|++|+++||||++||++++ +.+.+++.+++..+ |.
T Consensus 196 L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~-p~---------------------------------- 239 (401)
T PLN02157 196 LGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDD-PS---------------------------------- 239 (401)
T ss_pred HHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCC-HH----------------------------------
Confidence 5789999999999999999999999988 67778888876641 21
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF 126 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~ 126 (518)
+...+|+.+... ..+.+.++..|...+..|+.+++.++.+.+|-
T Consensus 240 -av~~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~ 283 (401)
T PLN02157 240 -VVESCLEKCAEV-AHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLE 283 (401)
T ss_pred -HHHHHHHHHhcc-cCCcchhHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 233566666544 23456778888999999999999999999994
No 209
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.24 E-value=6.7e-06 Score=78.19 Aligned_cols=151 Identities=13% Similarity=0.152 Sum_probs=111.6
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 010109 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (518)
++||+||+|.|...|+..+..+|. ++..+-.+......- ....| .-.+.++.+.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~----------~~~~g------------~~~~~~n~~~ 58 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLM----------FEALG------------VKTVFTNLEV 58 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhh----------hhcCC------------ceeeechHHH
Confidence 479999999999999999999986 455444422222110 00112 1123344667
Q ss_pred ccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCeEEE-EeCCC
Q 010109 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI-VRTNQ 302 (518)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvei-v~g~~ 302 (518)
++.+|+++.++ ++.+...++.++...+..+.|+.|...+.+++.+...+..+.|++..+++.|........+ ..+..
T Consensus 59 ~~~s~v~~~sv--Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~ 136 (267)
T KOG3124|consen 59 LQASDVVFLSV--KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCH 136 (267)
T ss_pred HhhccceeEee--cchhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCC
Confidence 88999999998 3445567777776666677899999999999999998887789999999999887766664 45677
Q ss_pred CcHHHHHHHHHHHHhcCCcE
Q 010109 303 TSPQVIVDLLDIGKKIKKTP 322 (518)
Q Consensus 303 t~~e~~~~~~~l~~~lGk~~ 322 (518)
...+..+.+..++...|+..
T Consensus 137 ~~~~D~~l~~~ll~~vG~~~ 156 (267)
T KOG3124|consen 137 ATNEDLELVEELLSAVGLCE 156 (267)
T ss_pred cchhhHHHHHHHHHhcCcce
Confidence 77888899999999999743
No 210
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.21 E-value=4.3e-06 Score=84.48 Aligned_cols=97 Identities=28% Similarity=0.403 Sum_probs=65.2
Q ss_pred eEEEEEeCCcchHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 010109 148 KKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (518)
+||+|||+|.+|..+|..++..| .+|.++|++++.++.....+... ..... . ..+ .++++++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~-------~~~~~----~--~~i-~~~d~~~l~ 66 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHG-------TPFVK----P--VRI-YAGDYADCK 66 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcc-------ccccC----C--eEE-eeCCHHHhC
Confidence 48999999999999999999999 58999999988765322111110 00000 0 122 246788899
Q ss_pred CCCEEEEeccc--------------ChHhHHHHHHHHhhhCCCCcEE
Q 010109 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCIL 258 (518)
Q Consensus 226 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il 258 (518)
+||+||.+++. +..+-+++..+|.++.+.+.++
T Consensus 67 ~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giii 113 (308)
T cd05292 67 GADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILL 113 (308)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 99999999964 2233455666777776554433
No 211
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.19 E-value=8.3e-07 Score=89.21 Aligned_cols=54 Identities=13% Similarity=-0.049 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCccccccccccccccCchhhHHHHHHHHHhh
Q 010109 461 LRLLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 516 (518)
Q Consensus 461 ~~~i~~r~~~~~~nea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (518)
...|.+|++.+++|||++|+++++++++||| .++++++|||+|||+++|.+|-.
T Consensus 186 ~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD--~~~~~g~g~~~Gp~~~~D~~Gl~ 239 (295)
T PLN02545 186 PGFIVNRILMPMINEAFYALYTGVASKEDID--TGMKLGTNHPMGPLHLADFIGLD 239 (295)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHHhccCCCCCHHHHHHHhchH
Confidence 4579999999999999999999999999999 99999999999999999999854
No 212
>PLN02602 lactate dehydrogenase
Probab=98.19 E-value=4.2e-06 Score=85.55 Aligned_cols=94 Identities=24% Similarity=0.376 Sum_probs=64.2
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhh--cccccccCccc
Q 010109 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTI--SLLTGVLDYES 223 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~--~~i~~~~~~~~ 223 (518)
+||+|||+|.+|+.+|..++..|. ++.|+|++++.++.....+.... ..+ ..+..++++++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~---------------~~~~~~~i~~~~dy~~ 102 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAA---------------AFLPRTKILASTDYAV 102 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhh---------------hcCCCCEEEeCCCHHH
Confidence 599999999999999999998886 79999999877654333222211 111 23444467899
Q ss_pred ccCCCEEEEeccc--------------ChHhHHHHHHHHhhhCCCCc
Q 010109 224 FKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHC 256 (518)
Q Consensus 224 ~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ 256 (518)
+++||+||.+.-. +..+-+++...+.++++...
T Consensus 103 ~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~i 149 (350)
T PLN02602 103 TAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTI 149 (350)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeE
Confidence 9999999998621 11233455566777655443
No 213
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.19 E-value=9e-07 Score=88.81 Aligned_cols=52 Identities=12% Similarity=-0.080 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCccccccccccccccCchhhHHHHHHHHHhh
Q 010109 463 LLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 516 (518)
Q Consensus 463 ~i~~r~~~~~~nea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (518)
=|.+|++.+++|||++|+++|+++++||| .++++++|||+|||+++|.+|-.
T Consensus 188 ~i~nRl~~~~~~ea~~~~~~g~~~~~~iD--~~~~~g~g~~~GP~~~~D~~Gl~ 239 (292)
T PRK07530 188 FIVNRILLPMINEAIYTLYEGVGSVEAID--TAMKLGANHPMGPLELADFIGLD 239 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCHHHHH--HHHHhCCCCCCCHHHHHHHhhhH
Confidence 38899999999999999999999999999 99999999999999999999854
No 214
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=98.14 E-value=4.2e-06 Score=84.35 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=39.9
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhc
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~ 42 (518)
|+|||++|+|+||+++||||+|||++++.+.+.++|++++..
T Consensus 188 llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~ 229 (302)
T PRK08272 188 LLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAV 229 (302)
T ss_pred HHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999999999875
No 215
>PRK07574 formate dehydrogenase; Provisional
Probab=98.14 E-value=2.1e-05 Score=81.29 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=73.3
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (518)
++|||||.|.||..+|..+...|.+|+.||++....+... ..| +....++ +.++.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~ 248 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQ-----------ELG-------------LTYHVSFDSLVSV 248 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHh-----------hcC-------------ceecCCHHHHhhc
Confidence 5899999999999999999999999999999863221100 011 1112234 44789
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC---cchhhhhhhcc
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~la~~~~ 275 (518)
||+|+.++|-..+.+.-+=++....++++++|+ |+|. ++-..+.+++.
T Consensus 249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~iVDe~AL~~AL~ 299 (385)
T PRK07574 249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLV-NTARGKIVDRDAVVRALE 299 (385)
T ss_pred CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEE-ECCCCchhhHHHHHHHHH
Confidence 999999999988876555456778899999886 4543 23346666663
No 216
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=98.14 E-value=5.2e-06 Score=84.00 Aligned_cols=97 Identities=21% Similarity=0.288 Sum_probs=65.1
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 010109 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (518)
+||+|||+|..|+.+|..++..|+ ++.++|++++.++.....+.+..... ....+. ++++++++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-------------~~~~i~-~~~~~~~~ 72 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT-------------SPTKIY-AGDYSDCK 72 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc-------------CCeEEE-eCCHHHhC
Confidence 499999999999999999999998 89999999887665433332221000 001233 46789999
Q ss_pred CCCEEEEeccc--------------ChHhHHHHHHHHhhhCCCCcEEE
Q 010109 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (518)
Q Consensus 226 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~ 259 (518)
+||+||.+.-. +..+-+++..++.++.+ +++++
T Consensus 73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~-~~~vi 119 (315)
T PRK00066 73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGF-DGIFL 119 (315)
T ss_pred CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence 99999987722 22234455556666654 55444
No 217
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.13 E-value=5.2e-06 Score=84.69 Aligned_cols=99 Identities=17% Similarity=0.114 Sum_probs=68.2
Q ss_pred eEEEEEeCCcchHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 010109 148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (518)
++|||||+|.||+.+|..++ ..|.+|+.+|+++..... .+ +....++ +.++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~--------------~~-------------~~~~~~l~ell~ 199 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA--------------TY-------------VDYKDTIEEAVE 199 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH--------------hh-------------ccccCCHHHHHH
Confidence 58999999999999999995 458899999998643211 00 1122344 3478
Q ss_pred CCCEEEEecccChHhHHHHH-HHHhhhCCCCcEEEEcCCCcch--hhhhhhc
Q 010109 226 DVDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTIDL--NLIGERT 274 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~-~~l~~~~~~~~il~sntS~l~i--~~la~~~ 274 (518)
+||+|+.++|.....+. ++ .++.+.++++++|+..+.+..+ ..+.+.+
T Consensus 200 ~aDvIvl~lP~t~~t~~-li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL 250 (332)
T PRK08605 200 GADIVTLHMPATKYNHY-LFNADLFKHFKKGAVFVNCARGSLVDTKALLDAL 250 (332)
T ss_pred hCCEEEEeCCCCcchhh-hcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHH
Confidence 99999999998876543 43 4566778999988644433333 3555555
No 218
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.12 E-value=1.3e-05 Score=80.99 Aligned_cols=101 Identities=17% Similarity=0.166 Sum_probs=74.4
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (518)
++|||||.|.||..+|..+...|++|+.||++.+..... . ......++ +.+++
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~-----------------~---------~~~~~~~l~e~l~~ 190 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV-----------------Q---------SFAGREELSAFLSQ 190 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc-----------------e---------eecccccHHHHHhc
Confidence 689999999999999999999999999999876432100 0 00011233 45789
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC---cchhhhhhhcc
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~la~~~~ 275 (518)
||+|+.++|...+.+.-+-.+....++++++|+ |++- +.-+.+.+++.
T Consensus 191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~aL~~aL~ 241 (312)
T PRK15469 191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLL-NLARGVHVVEDDLLAALD 241 (312)
T ss_pred CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEE-ECCCccccCHHHHHHHHh
Confidence 999999999999887766677888899999886 5542 44456766664
No 219
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=98.11 E-value=7.3e-06 Score=82.47 Aligned_cols=99 Identities=23% Similarity=0.349 Sum_probs=67.4
Q ss_pred EEEEeCCcchHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 010109 150 VAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (518)
Q Consensus 150 V~VIGaG~MG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (518)
|+|||+|.+|+.+|..++..| .+++++|++++.++....++....... ...++..+++++++++|
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~-------------~~~~i~~~~~~~~l~~a 67 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL-------------ATGTIVRGGDYADAADA 67 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc-------------CCCeEEECCCHHHhCCC
Confidence 689999999999999999998 589999999987765443332221100 01234445668899999
Q ss_pred CEEEEeccc--------------ChHhHHHHHHHHhhhCCCCcEEEEcC
Q 010109 228 DMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNT 262 (518)
Q Consensus 228 DlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~snt 262 (518)
|+||.++.. +..+-+++..++.+++ ++++++..|
T Consensus 68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~s 115 (300)
T cd00300 68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVS 115 (300)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcc
Confidence 999999842 2224455666788877 555554333
No 220
>PLN03139 formate dehydrogenase; Provisional
Probab=98.11 E-value=3.5e-05 Score=79.68 Aligned_cols=103 Identities=14% Similarity=0.117 Sum_probs=74.2
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (518)
++|||||.|.||..+|..+...|.+|..||++....+... +.| +....+++ .+++
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~ 255 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEK-----------ETG-------------AKFEEDLDAMLPK 255 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHh-----------hcC-------------ceecCCHHHHHhh
Confidence 6899999999999999999999999999998753221100 011 11223443 4689
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC---cchhhhhhhcc
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~la~~~~ 275 (518)
||+|+.++|...+.+.-+-+++...++++++|+ |++. ++-+.+.+++.
T Consensus 256 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~iVDe~AL~~AL~ 306 (386)
T PLN03139 256 CDVVVINTPLTEKTRGMFNKERIAKMKKGVLIV-NNARGAIMDTQAVADACS 306 (386)
T ss_pred CCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEE-ECCCCchhhHHHHHHHHH
Confidence 999999999988876666567888899999886 5553 23346666663
No 221
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=98.10 E-value=1e-05 Score=81.79 Aligned_cols=123 Identities=18% Similarity=0.201 Sum_probs=76.7
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCCc--EEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 010109 148 KKVAILGG-GLMGSGIATALILSNYP--VILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~~--V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (518)
+||+|||+ |..|..++..++..|+. |+++|+++ +.++.....+. +.+...+ ...+++.+++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~---d~~~~~~---------~~~~i~~~~d~~ 68 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIY---DALAAAG---------IDAEIKISSDLS 68 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhh---hchhccC---------CCcEEEECCCHH
Confidence 58999998 99999999999999974 99999965 44333222211 1111111 011455666788
Q ss_pred cccCCCEEEEecc--c----C-h-------HhHHHHHHHHhhhCCCCcEEEEcCCCcchhh--hhhhccC-cCceeec
Q 010109 223 SFKDVDMVIEAII--E----N-V-------SLKQQIFADLEKYCPPHCILASNTSTIDLNL--IGERTYS-KDRIVGA 283 (518)
Q Consensus 223 ~~~~aDlVIeav~--e----~-~-------~~k~~v~~~l~~~~~~~~il~sntS~l~i~~--la~~~~~-~~r~ig~ 283 (518)
++++||+||.++. . + . .+-+++...+.+.+ ++++++.+++..++-. +....+. +.+++|+
T Consensus 69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd~~t~~~~~~~g~~~~~viG~ 145 (309)
T cd05294 69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVDVMTYKALKESGFDKNRVFGL 145 (309)
T ss_pred HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHHHhcCCCHHHEeec
Confidence 8999999999984 1 1 1 23445556677776 4666666777665532 2222222 3566665
No 222
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.06 E-value=1.5e-05 Score=79.93 Aligned_cols=123 Identities=14% Similarity=0.076 Sum_probs=81.3
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (518)
++|||||.|.||+.+|..+...|++|+.||++... .+. . . ...++ +.+++
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----------------~~~-~---------~--~~~~l~ell~~ 173 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----------------DGI-S---------S--IYMEPEDIMKK 173 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----------------cCc-c---------c--ccCCHHHHHhh
Confidence 68999999999999999887779999999987421 010 0 0 01233 34689
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCc---chhhhhhhccCc-Cceeecccc--ccc---CCCCeEEE
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI---DLNLIGERTYSK-DRIVGAHFF--SPA---HVMPLLEI 297 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l---~i~~la~~~~~~-~r~ig~hf~--~P~---~~~~lvei 297 (518)
||+|+.++|...+.+.-+-++....++++++++ |+|.- .-.++.+++... ....++-.| .|. +..+-+.+
T Consensus 174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lI-N~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~~~~nvii 252 (303)
T PRK06436 174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAII-NVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPDNVIL 252 (303)
T ss_pred CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccCCCCCEEE
Confidence 999999999988876655566777899999886 45543 334666666432 233333333 232 23455666
Q ss_pred EeC
Q 010109 298 VRT 300 (518)
Q Consensus 298 v~g 300 (518)
.|+
T Consensus 253 TPH 255 (303)
T PRK06436 253 SPH 255 (303)
T ss_pred CCc
Confidence 666
No 223
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.03 E-value=2.4e-06 Score=86.24 Aligned_cols=52 Identities=6% Similarity=-0.157 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCccccccccccccccCch---hhHHHHHHHHHh
Q 010109 462 RLLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFL---SHVLSWLKELAR 515 (518)
Q Consensus 462 ~~i~~r~~~~~~nea~~~l~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~ 515 (518)
-=|.||++.+++|||++++++|++|++||| .++++|.|++ +|||+++|.+|-
T Consensus 188 GFi~NRl~~a~~~EA~~lv~eGvas~edID--~a~~~g~g~r~~~~Gpf~~~Dl~Gl 242 (321)
T PRK07066 188 GFIADRLLEALWREALHLVNEGVATTGEID--DAIRFGAGIRWSFMGTFLTYTLAGG 242 (321)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCHHHHH--HHHHhCCCCCccCcCHHHHhhhcCh
Confidence 459999999999999999999999999999 9999999987 899999998764
No 224
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.01 E-value=6.8e-06 Score=73.84 Aligned_cols=113 Identities=22% Similarity=0.217 Sum_probs=72.9
Q ss_pred EEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccCc-ccccCC
Q 010109 150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDY-ESFKDV 227 (518)
Q Consensus 150 V~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~-~~~~~a 227 (518)
|+|+|+|.||.-+|..|.++|++|+++++++ .++... +.|. ++..+.+..........+. +....+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIK-----------EQGLTITGPDGDETVQPPIVISAPSADAGPY 68 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHH-----------HHCEEEEETTEEEEEEEEEEESSHGHHHSTE
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhh-----------heeEEEEecccceecccccccCcchhccCCC
Confidence 7899999999999999999999999999998 655422 1221 0000000000000011111 246789
Q ss_pred CEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchh-hhhhhccC
Q 010109 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYS 276 (518)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~-~la~~~~~ 276 (518)
|+||.|+.... -..++..+.+.+.+++.+++...++... .+.+..+.
T Consensus 69 D~viv~vKa~~--~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~ 116 (151)
T PF02558_consen 69 DLVIVAVKAYQ--LEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPR 116 (151)
T ss_dssp SEEEE-SSGGG--HHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTG
T ss_pred cEEEEEecccc--hHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCC
Confidence 99999997543 3568888999999998777777777654 44444433
No 225
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.01 E-value=3.6e-05 Score=77.87 Aligned_cols=102 Identities=22% Similarity=0.218 Sum_probs=74.0
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-ccc
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 225 (518)
++|||||+|.+|+.+|..+..-|.+|..||+ .+...... .+ .....+++ .++
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~-------------~~-------------~~~~~~Ld~lL~ 196 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV-------------DG-------------VVGVDSLDELLA 196 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc-------------cc-------------ceecccHHHHHh
Confidence 5899999999999999999999999999999 43322210 01 11223454 478
Q ss_pred CCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC---cchhhhhhhccC
Q 010109 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYS 276 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~la~~~~~ 276 (518)
.||+|+..+|..++.+.-+=++....++++++|+ |+|- +.-..|.+++..
T Consensus 197 ~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailI-N~aRG~vVde~aL~~AL~~ 249 (324)
T COG0111 197 EADILTLHLPLTPETRGLINAEELAKMKPGAILI-NAARGGVVDEDALLAALDS 249 (324)
T ss_pred hCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEE-ECCCcceecHHHHHHHHHc
Confidence 9999999999998865555466777899999775 6663 344567776643
No 226
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=98.01 E-value=1.8e-05 Score=78.86 Aligned_cols=105 Identities=28% Similarity=0.383 Sum_probs=66.1
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 010109 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (518)
+||+|||+|.+|+++|..++..++ ++.++|++++.++.-...+..... ......++..+.++++++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~------------~~~~~~~i~~~~~y~~~~ 68 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAA------------PLGSDVKITGDGDYEDLK 68 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcch------------hccCceEEecCCChhhhc
Confidence 589999999999999999987754 899999996554432111111100 000112333334589999
Q ss_pred CCCEEEEec--cc------------ChHhHHHHHHHHhhhCCCCcEEEEcCCCc
Q 010109 226 DVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNTSTI 265 (518)
Q Consensus 226 ~aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (518)
++|+||.+. |- +..+.+++-.++.+.++ +.++...|...
T Consensus 69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvtNPv 121 (313)
T COG0039 69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVTNPV 121 (313)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEecCcH
Confidence 999999987 32 33355556667777776 55544444333
No 227
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.96 E-value=5.3e-05 Score=82.07 Aligned_cols=102 Identities=20% Similarity=0.109 Sum_probs=71.3
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (518)
++|||||.|.||+.+|..+...|++|+.||+.... +... ..| +....++ +.+++
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~~~l~ell~~ 193 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAE-----------QLG-------------VELVDDLDELLAR 193 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEcCCHHHHHhh
Confidence 68999999999999999999999999999985321 1100 111 1122234 34789
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC---cchhhhhhhcc
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~la~~~~ 275 (518)
||+|+.++|-..+.+.-+=++..+.++++++|+ |+|. ++-..+.+++.
T Consensus 194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~ 244 (525)
T TIGR01327 194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIV-NCARGGIIDEAALYEALE 244 (525)
T ss_pred CCEEEEccCCChhhccCcCHHHHhcCCCCeEEE-EcCCCceeCHHHHHHHHH
Confidence 999999999887765544456666889999886 4543 34456766664
No 228
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.95 E-value=1.2e-05 Score=74.57 Aligned_cols=103 Identities=20% Similarity=0.191 Sum_probs=70.2
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (518)
++|||||.|.+|..+|..+..-|.+|+.||++........ ..+ . ...++ +.++.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-----------~~~-------------~-~~~~l~ell~~ 91 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-----------EFG-------------V-EYVSLDELLAQ 91 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-----------HTT-------------E-EESSHHHHHHH
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc-----------ccc-------------c-eeeehhhhcch
Confidence 6899999999999999999999999999999987544110 011 1 12244 34788
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC--cchhhhhhhcc
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~la~~~~ 275 (518)
||+|+.++|-..+.+.-+=++....++++++|+..+-+ ++-+.+.+++.
T Consensus 92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred hhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence 99999999977665444445666788999988744333 33446666664
No 229
>PLN02928 oxidoreductase family protein
Probab=97.95 E-value=6e-05 Score=77.33 Aligned_cols=115 Identities=14% Similarity=0.066 Sum_probs=73.2
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (518)
++|||||.|.||..+|..+...|.+|+.||++........ .+ +................++ +.+++
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~------------~~-~~~~~~~~~~~~~~~~~~L~ell~~ 226 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDG------------LL-IPNGDVDDLVDEKGGHEDIYEFAGE 226 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhh------------hc-cccccccccccccCcccCHHHHHhh
Confidence 6899999999999999999999999999999743211100 00 0000000000000011234 45789
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC--cchhhhhhhcc
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~la~~~~ 275 (518)
||+|+.++|-..+.+.-+-++....++++++|+..+-+ ++-+.+.+++.
T Consensus 227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~ 277 (347)
T PLN02928 227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALE 277 (347)
T ss_pred CCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 99999999988776554546677788999988644333 34456767664
No 230
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.94 E-value=2.3e-05 Score=78.86 Aligned_cols=74 Identities=22% Similarity=0.354 Sum_probs=51.6
Q ss_pred EEEEEeCCcchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 010109 149 KVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (518)
Q Consensus 149 kV~VIGaG~MG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (518)
||+|||+|.+|+.+|..++..|. ++.|+|++++.++.-...+..... +.. ...-++. +.+++++++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~-------~~~----~~~~~i~-~~~y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATA-------LTY----STNTKIR-AGDYDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhc-------cCC----CCCEEEE-ECCHHHhCC
Confidence 79999999999999999999887 799999998765543222211110 000 0001233 467899999
Q ss_pred CCEEEEec
Q 010109 227 VDMVIEAI 234 (518)
Q Consensus 227 aDlVIeav 234 (518)
||+||.+.
T Consensus 69 aDivvita 76 (307)
T cd05290 69 ADIIVITA 76 (307)
T ss_pred CCEEEECC
Confidence 99999987
No 231
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.91 E-value=0.00022 Score=70.36 Aligned_cols=152 Identities=16% Similarity=0.091 Sum_probs=101.5
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc--cc
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES--FK 225 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--~~ 225 (518)
.+|||||.|.||.=+|..+.++|+.|...||++ -+.+.+++ ..+.. +++.+ -.
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~y--------g~~~f---------------t~lhdlcer 107 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKY--------GSAKF---------------TLLHDLCER 107 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHh--------ccccc---------------ccHHHHHhc
Confidence 589999999999999999999999999999987 22222111 11111 11222 25
Q ss_pred CCCEEEEecccChHhHHHHHHHHhhh-CCCCcEEEEcCCCcc--hhhhhhhccCcCceeecccccccC-C------CCeE
Q 010109 226 DVDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAH-V------MPLL 295 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~-~~~~~il~sntS~l~--i~~la~~~~~~~r~ig~hf~~P~~-~------~~lv 295 (518)
..|+|+.|+.-- -..++++..-.. ++.++|+...+|... .+....-++..-.++..|++..+. . .|+|
T Consensus 108 hpDvvLlctsil--siekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfV 185 (480)
T KOG2380|consen 108 HPDVVLLCTSIL--SIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFV 185 (480)
T ss_pred CCCEEEEEehhh--hHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceE
Confidence 689999998422 223455544333 667899999888653 334455565566789999975432 1 2555
Q ss_pred EEE---eCCCCcHHHHHHHHHHHHhcCCcEEEeC
Q 010109 296 EIV---RTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (518)
Q Consensus 296 eiv---~g~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (518)
-+- ......++..+.+.+++...|...|.+.
T Consensus 186 ydkvRig~~~~r~ercE~fleIf~cegckmVemS 219 (480)
T KOG2380|consen 186 YDKVRIGYAASRPERCEFFLEIFACEGCKMVEMS 219 (480)
T ss_pred EEEeeccccccchHHHHHHHHHHHhcCCeEEEEE
Confidence 431 2233458899999999999998888764
No 232
>PRK05442 malate dehydrogenase; Provisional
Probab=97.91 E-value=2.3e-05 Score=79.52 Aligned_cols=104 Identities=15% Similarity=0.126 Sum_probs=66.6
Q ss_pred ceEEEEEeC-CcchHHHHHHHHhCCC-------cEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--c
Q 010109 147 VKKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--L 214 (518)
Q Consensus 147 ~~kV~VIGa-G~MG~~iA~~la~~G~-------~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~ 214 (518)
..||+|||+ |.+|+.+|..++..|+ ++.|+|++++ .++.-...+.+... .... .
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~--------------~~~~~~~ 69 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAF--------------PLLAGVV 69 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhh--------------hhcCCcE
Confidence 359999998 9999999999988765 7999999653 23221111111110 0011 2
Q ss_pred cccccCcccccCCCEEEEecc--c------------ChHhHHHHHHHHhhhCCCCcEEEEcCCCc
Q 010109 215 LTGVLDYESFKDVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHCILASNTSTI 265 (518)
Q Consensus 215 i~~~~~~~~~~~aDlVIeav~--e------------~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (518)
++ +.+++++++||+||.+.- . +..+-+++..+|.++.+++++++..|...
T Consensus 70 i~-~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv 133 (326)
T PRK05442 70 IT-DDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA 133 (326)
T ss_pred Ee-cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence 32 466899999999998762 1 12244556667888777787766555434
No 233
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.89 E-value=6.4e-05 Score=81.50 Aligned_cols=101 Identities=21% Similarity=0.152 Sum_probs=71.9
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (518)
++|||||.|.||..+|..+...|++|+.||++... +... ..| +... ++ +.+++
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~ell~~ 194 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAA-----------QLG-------------VELV-SLDELLAR 194 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEE-cHHHHHhh
Confidence 68999999999999999999999999999986421 1100 111 1112 33 44789
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC---cchhhhhhhcc
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~la~~~~ 275 (518)
||+|+.++|-..+.+.-+-++..+.++++++++ |+|. ++-..+.+++.
T Consensus 195 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~ 245 (526)
T PRK13581 195 ADFITLHTPLTPETRGLIGAEELAKMKPGVRII-NCARGGIIDEAALAEALK 245 (526)
T ss_pred CCEEEEccCCChHhhcCcCHHHHhcCCCCeEEE-ECCCCceeCHHHHHHHHh
Confidence 999999999888765544466778899999886 4443 33446666663
No 234
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.86 E-value=3.5e-05 Score=78.09 Aligned_cols=103 Identities=18% Similarity=0.142 Sum_probs=67.1
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--cc
Q 010109 148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--LL 215 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~i 215 (518)
-||+|||+ |..|+.+|..++..|+ +++|+|+++ +.++.-...+.+.. . .... .+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~---------~-----~~~~~~~i 69 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCA---------F-----PLLAGVVA 69 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhcc---------c-----cccCCcEE
Confidence 59999998 9999999999998886 799999965 32332111111110 0 0001 22
Q ss_pred ccccCcccccCCCEEEEeccc--------------ChHhHHHHHHHHhhhCCCCcEEEEcCCCc
Q 010109 216 TGVLDYESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNTSTI 265 (518)
Q Consensus 216 ~~~~~~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (518)
+ +.+++++++||+||.+.-. +..+-+++..++.++++++++++..|...
T Consensus 70 ~-~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv 132 (323)
T TIGR01759 70 T-TDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA 132 (323)
T ss_pred e-cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH
Confidence 2 4568999999999987621 12344566677888887677776555433
No 235
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.85 E-value=6.9e-05 Score=67.37 Aligned_cols=98 Identities=23% Similarity=0.285 Sum_probs=61.2
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (518)
+++.|+|.|..|+++|+.|...|.+|+++|++|-.+-++. -.| ....+-.+.+..+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~-----------~dG-------------f~v~~~~~a~~~a 79 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA-----------MDG-------------FEVMTLEEALRDA 79 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-----------HTT--------------EEE-HHHHTTT-
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh-----------hcC-------------cEecCHHHHHhhC
Confidence 5799999999999999999999999999999996543322 122 2222223568899
Q ss_pred CEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC---cchhhhhhh
Q 010109 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGER 273 (518)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~la~~ 273 (518)
|++|.+.-...-+..+-|. .+++++|+++.++. +++..+.+.
T Consensus 80 di~vtaTG~~~vi~~e~~~----~mkdgail~n~Gh~d~Eid~~~L~~~ 124 (162)
T PF00670_consen 80 DIFVTATGNKDVITGEHFR----QMKDGAILANAGHFDVEIDVDALEAN 124 (162)
T ss_dssp SEEEE-SSSSSSB-HHHHH----HS-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred CEEEECCCCccccCHHHHH----HhcCCeEEeccCcCceeEeecccccc
Confidence 9999988654433444444 47899999876653 445555443
No 236
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.85 E-value=6.2e-05 Score=69.47 Aligned_cols=95 Identities=26% Similarity=0.319 Sum_probs=61.4
Q ss_pred EEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc---
Q 010109 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE---KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--- 221 (518)
Q Consensus 149 kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~---~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--- 221 (518)
||.|||+|.||+.++..|++.|. +++++|.+. +.+.+-.- ... +-|+-..+.+...+.++.+..+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-----~~~--~vg~~Ka~~~~~~l~~lnp~v~i~~~ 73 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-----FLS--QIGEPKVEALKENLREINPFVKIEAI 73 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-----cHh--hCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 68999999999999999999999 599999986 44432110 001 11222222233333333222111
Q ss_pred ----------ccccCCCEEEEecccChHhHHHHHHHHhhh
Q 010109 222 ----------ESFKDVDMVIEAIIENVSLKQQIFADLEKY 251 (518)
Q Consensus 222 ----------~~~~~aDlVIeav~e~~~~k~~v~~~l~~~ 251 (518)
+.++++|+||+| .++.+.|..+.....+.
T Consensus 74 ~~~~~~~~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 74 NIKIDENNLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN 112 (174)
T ss_pred EeecChhhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence 236889999999 67888887787777665
No 237
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.85 E-value=0.00011 Score=77.13 Aligned_cols=105 Identities=15% Similarity=0.180 Sum_probs=70.7
Q ss_pred ceEEEEEeC-CcchHHHHHHHHhC-------CC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc
Q 010109 147 VKKVAILGG-GLMGSGIATALILS-------NY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT 216 (518)
Q Consensus 147 ~~kV~VIGa-G~MG~~iA~~la~~-------G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~ 216 (518)
.-||+|||+ |.+|..+|..++.. |+ +++++|++++.++.-.-.+.+.... .+..+.
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~--------------~~~~v~ 165 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYP--------------LLREVS 165 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhh--------------hcCceE
Confidence 369999999 99999999999988 66 8999999999876544333322211 112233
Q ss_pred -cccCcccccCCCEEEEeccc--------------ChHhHHHHHHHHhhhCCCCcEEEEcCCCc
Q 010109 217 -GVLDYESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNTSTI 265 (518)
Q Consensus 217 -~~~~~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (518)
.+.+++++++||+||.+.-- +..+-+++...|.++..++++++..+...
T Consensus 166 i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv 229 (444)
T PLN00112 166 IGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC 229 (444)
T ss_pred EecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH
Confidence 34678999999999987721 12234455556776556777766555333
No 238
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.84 E-value=4.2e-05 Score=76.32 Aligned_cols=89 Identities=24% Similarity=0.256 Sum_probs=61.2
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (518)
++|+|||+|.||..+|..|...|.+|++++++++.++.+. +.|. . .+. ..++ +.+.+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-----------~~g~-~---------~~~-~~~l~~~l~~ 209 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARIT-----------EMGL-I---------PFP-LNKLEEKVAE 209 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HCCC-e---------eec-HHHHHHHhcc
Confidence 5899999999999999999999999999999987654421 1121 0 000 1122 34689
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCC
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (518)
+|+||.++|...- . ++..+.++++++++..+|
T Consensus 210 aDiVint~P~~ii-~----~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 210 IDIVINTIPALVL-T----ADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred CCEEEECCChHHh-C----HHHHhcCCCCeEEEEeCc
Confidence 9999999986531 1 233445677887765554
No 239
>PRK05869 enoyl-CoA hydratase; Validated
Probab=97.84 E-value=2e-05 Score=75.76 Aligned_cols=42 Identities=33% Similarity=0.646 Sum_probs=39.8
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhc
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~ 42 (518)
|+++|++++|++|+++||||+|+|++++.+.|.+++++++..
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~ 204 (222)
T PRK05869 163 LVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDG 204 (222)
T ss_pred HHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999999999875
No 240
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.81 E-value=0.00037 Score=69.13 Aligned_cols=195 Identities=17% Similarity=0.191 Sum_probs=124.1
Q ss_pred cceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc--
Q 010109 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-- 223 (518)
Q Consensus 146 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 223 (518)
+...||+||++.||..++...+.+|+.|.+|+|+.++.+....+-. +| ..|....++++
T Consensus 5 ~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flanea--------k~-----------~~i~ga~S~ed~v 65 (487)
T KOG2653|consen 5 PKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEA--------KG-----------TKIIGAYSLEDFV 65 (487)
T ss_pred cccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhh--------cC-----------CcccCCCCHHHHH
Confidence 3568999999999999999999999999999999999887654211 11 11223334433
Q ss_pred --ccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcC--CCcchh-hhhhhccCcCceeeccccc---ccCCCCeE
Q 010109 224 --FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT--STIDLN-LIGERTYSKDRIVGAHFFS---PAHVMPLL 295 (518)
Q Consensus 224 --~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt--S~l~i~-~la~~~~~~~r~ig~hf~~---P~~~~~lv 295 (518)
++.--.||..|..... ...++++|.+++.++.||++.. +..+.. +..+..+..--|+|+-.-. .+..+|
T Consensus 66 ~klk~PR~iillvkAG~p-VD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP-- 142 (487)
T KOG2653|consen 66 SKLKKPRVIILLVKAGAP-VDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP-- 142 (487)
T ss_pred HhcCCCcEEEEEeeCCCc-HHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC--
Confidence 4666777777754433 3577889999998888777543 333322 3333333344566654432 111122
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcC-------CcEEEeCC-cccchh----hhhHH---HHHHHHHHHHHc--CCCHHHHH
Q 010109 296 EIVRTNQTSPQVIVDLLDIGKKIK-------KTPIVVGN-CTGFAV----NRMFF---PYTQAAFLLVER--GTDLYLID 358 (518)
Q Consensus 296 eiv~g~~t~~e~~~~~~~l~~~lG-------k~~v~v~d-~~Gfi~----nril~---~~~~Ea~~l~~~--G~~~~~ID 358 (518)
.+++| .++++...+++++..+. ....++++ ..|.++ |-|-+ .++.||..++.. |.+-++|-
T Consensus 143 SlMpG--g~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia 220 (487)
T KOG2653|consen 143 SLMPG--GSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIA 220 (487)
T ss_pred ccCCC--CChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHH
Confidence 24455 47788888888876642 22345664 345433 44433 468999999876 56888888
Q ss_pred HHHHhc
Q 010109 359 RAITKF 364 (518)
Q Consensus 359 ~a~~~~ 364 (518)
.++..+
T Consensus 221 ~vF~~W 226 (487)
T KOG2653|consen 221 EVFDDW 226 (487)
T ss_pred HHHHhh
Confidence 887643
No 241
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=97.79 E-value=8.1e-05 Score=73.59 Aligned_cols=181 Identities=19% Similarity=0.182 Sum_probs=104.4
Q ss_pred ccceEEEEEeCCcchHHHHHHHHhC--CC-----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc
Q 010109 145 RRVKKVAILGGGLMGSGIATALILS--NY-----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG 217 (518)
Q Consensus 145 ~~~~kV~VIGaG~MG~~iA~~la~~--G~-----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 217 (518)
+...||+|||+|+||+.||..+..+ ++ +|.+|-..++.-.. .+.+...+....+.-+.-+. -....++..
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~-~~~L~eiIN~~heN~KYlpg--~~lP~NvvA 95 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE-AEKLTEIINSRHENVKYLPG--IKLPENVVA 95 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh-hHHHHHHhccccccccccCC--ccCCCCeEe
Confidence 3457999999999999999988764 22 68888776554332 11222222211111110000 122345667
Q ss_pred ccCc-ccccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchh-----------hhhhhccCcCceee-cc
Q 010109 218 VLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-----------LIGERTYSKDRIVG-AH 284 (518)
Q Consensus 218 ~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~-----------~la~~~~~~~r~ig-~h 284 (518)
++|+ +++.|+|++|.++|-. ....++.+|..++++++..+|-+-++... .|...++-|-.++. ..
T Consensus 96 v~dl~ea~~dADilvf~vPhQ--f~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaN 173 (372)
T KOG2711|consen 96 VPDLVEAAKDADILVFVVPHQ--FIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGAN 173 (372)
T ss_pred cchHHHHhccCCEEEEeCChh--hHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecCCc
Confidence 7776 5688999999999966 45689999999999999888876555432 22233333322221 11
Q ss_pred cccccCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCcEEEeCCccc
Q 010109 285 FFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (518)
Q Consensus 285 f~~P~~~~~lveiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G 330 (518)
+-+-+......|-.-+...+.+.-..+..+|+.--..++++.|..|
T Consensus 174 iA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~ 219 (372)
T KOG2711|consen 174 IASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADG 219 (372)
T ss_pred hHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchH
Confidence 1111111223333333222333333577788877777777777544
No 242
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.78 E-value=8e-05 Score=74.94 Aligned_cols=99 Identities=20% Similarity=0.286 Sum_probs=62.3
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cC---
Q 010109 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD--- 220 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~--- 220 (518)
+||+|||+ |.+|+.+|..++..|+ ++.++|++ .++.-.-.+ ..+. ....+... .+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL--------~~~~--------~~~~i~~~~~~~~~ 62 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADL--------SHIN--------TPAKVTGYLGPEEL 62 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHh--------HhCC--------CcceEEEecCCCch
Confidence 48999999 9999999999998885 89999998 221110011 0110 01134432 32
Q ss_pred cccccCCCEEEEeccc--------------ChHhHHHHHHHHhhhCCCCcEEEEcCCCc
Q 010109 221 YESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNTSTI 265 (518)
Q Consensus 221 ~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (518)
++++++||+||.+.-- +..+-+++...+.++. |++++...|...
T Consensus 63 y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivvtNPv 120 (310)
T cd01337 63 KKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILIISNPV 120 (310)
T ss_pred HHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCch
Confidence 7999999999987721 2224445556677764 566665444444
No 243
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=97.72 E-value=6.7e-05 Score=69.73 Aligned_cols=93 Identities=18% Similarity=0.078 Sum_probs=78.0
Q ss_pred cccCCCCCHHHHHhCCCcceecCC-chHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 2 MLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 2 iltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
.+|++.++|.||++.|||.+|+|. ++|++.+..+|..++.++ |.
T Consensus 192 afTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KS-pv---------------------------------- 236 (292)
T KOG1681|consen 192 AFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKS-PV---------------------------------- 236 (292)
T ss_pred HhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCC-ce----------------------------------
Confidence 579999999999999999999986 679999999999988763 43
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhc
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr~ 130 (518)
|..-+|+.+..+.+.+.+++|.+-..+-...+.|++.-..+.+-..+++
T Consensus 237 -aVqgTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k 285 (292)
T KOG1681|consen 237 -AVQGTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLK 285 (292)
T ss_pred -eeechHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4556788899999999999999988888888888888777777666543
No 244
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.71 E-value=0.00017 Score=74.42 Aligned_cols=102 Identities=19% Similarity=0.225 Sum_probs=66.9
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCC-------cEEEE--eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc-
Q 010109 148 KKVAILGG-GLMGSGIATALILSNY-------PVILK--EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT- 216 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~-------~V~l~--d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~- 216 (518)
-||+|||+ |.+|+.+|..++..|+ .++|+ |++++.++.-.-.+.+..- ..+..++
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~--------------~~~~~v~i 110 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLY--------------PLLREVSI 110 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhh--------------hhcCceEE
Confidence 59999999 9999999999998875 24445 8888876653333322210 1112233
Q ss_pred cccCcccccCCCEEEEeccc--------------ChHhHHHHHHHHhhhCCCCcEEEEcCC
Q 010109 217 GVLDYESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNTS 263 (518)
Q Consensus 217 ~~~~~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~sntS 263 (518)
.+.+++++++||+||.+.-- +..+-+++...|.++.+++++++..|.
T Consensus 111 ~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN 171 (387)
T TIGR01757 111 GIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN 171 (387)
T ss_pred ecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 34678999999999987621 222344555667777778887665553
No 245
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.71 E-value=6.8e-05 Score=75.56 Aligned_cols=99 Identities=21% Similarity=0.358 Sum_probs=62.9
Q ss_pred EEEEEeC-CcchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-c-cC--c
Q 010109 149 KVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-V-LD--Y 221 (518)
Q Consensus 149 kV~VIGa-G~MG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~-~~--~ 221 (518)
||+|||+ |.+|+.+|..++..|+ ++.|+|+++ ....+.+ + ..+. ....+.. + .+ +
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~D-L--------~~~~--------~~~~i~~~~~~~~~~ 62 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAAD-L--------SHIP--------TAASVKGFSGEEGLE 62 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEch-h--------hcCC--------cCceEEEecCCCchH
Confidence 7999999 9999999999998886 899999987 2111110 0 1110 0113433 2 23 7
Q ss_pred ccccCCCEEEEecc--------------cChHhHHHHHHHHhhhCCCCcEEEEcCCCcc
Q 010109 222 ESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTID 266 (518)
Q Consensus 222 ~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS~l~ 266 (518)
+++++||+||.+.- .+..+-+++...+.++. |+++++..|...+
T Consensus 63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPvD 120 (312)
T TIGR01772 63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPVN 120 (312)
T ss_pred HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCchh
Confidence 89999999998772 23334455556677764 6666554444443
No 246
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.71 E-value=6.5e-05 Score=74.58 Aligned_cols=71 Identities=14% Similarity=0.258 Sum_probs=55.2
Q ss_pred eEEEEEeCC-cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 010109 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG-~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (518)
++|+|||.| .||.+||..|.++|++|++|++....++ +.+++
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~-------------------------------------e~~~~ 202 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAK-------------------------------------ALCRQ 202 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhc
Confidence 589999996 9999999999999999999986543221 23568
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcC
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (518)
||+||.|++....++..+ +++++++++.+
T Consensus 203 ADIVIsavg~~~~v~~~~-------ik~GaiVIDvg 231 (301)
T PRK14194 203 ADIVVAAVGRPRLIDADW-------LKPGAVVIDVG 231 (301)
T ss_pred CCEEEEecCChhcccHhh-------ccCCcEEEEec
Confidence 999999998765444332 68899887644
No 247
>PLN00106 malate dehydrogenase
Probab=97.67 E-value=0.00014 Score=73.67 Aligned_cols=96 Identities=20% Similarity=0.309 Sum_probs=60.5
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccC---
Q 010109 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD--- 220 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~--- 220 (518)
.||+|||+ |.+|+.+|..++..++ ++.++|+++ ....+. .+. .. .. ...+.. +.+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-~~g~a~-Dl~--------~~-------~~-~~~i~~~~~~~d~ 80 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-TPGVAA-DVS--------HI-------NT-PAQVRGFLGDDQL 80 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-CCeeEc-hhh--------hC-------Cc-CceEEEEeCCCCH
Confidence 59999999 9999999999998776 899999987 111010 000 00 00 012221 233
Q ss_pred cccccCCCEEEEec--------------ccChHhHHHHHHHHhhhCCCCcEEEEcC
Q 010109 221 YESFKDVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCILASNT 262 (518)
Q Consensus 221 ~~~~~~aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (518)
++++++||+||.+. +.+..+-++++..+.++. +++++...|
T Consensus 81 ~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvS 135 (323)
T PLN00106 81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIIS 135 (323)
T ss_pred HHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeC
Confidence 57899999999876 223334556666777776 555554333
No 248
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=97.66 E-value=0.00021 Score=74.06 Aligned_cols=124 Identities=16% Similarity=0.214 Sum_probs=83.0
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhh---h-cccCC-----------------CCCc
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVAT---L-YKTDK-----------------IEPL 59 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~---~-~~~~~-----------------~~~~ 59 (518)
|+|||++++|++|+++||||++||++++.+.+.+++ +++..+ |.... . ..... +...
T Consensus 168 l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~ 245 (381)
T PLN02988 168 VGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSND-PTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRR 245 (381)
T ss_pred HHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-HhhccC-HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Confidence 578999999999999999999999999988888877 444321 11100 0 00000 0000
Q ss_pred hHHHHHHH------------HHHHHHHh-hCCCCCcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhC---CHHHHHHHH
Q 010109 60 GEAREIFK------------FARAQARK-QAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLR---SETCKSLVH 123 (518)
Q Consensus 60 ~~~~~~~~------------~a~~~~~~-~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~---s~~a~~~i~ 123 (518)
....+++ .+++.... +.+.+.+...+.+.++.+...++.+.+..|.+.-..++. ++|+.++++
T Consensus 246 -~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVR 324 (381)
T PLN02988 246 -TVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCR 324 (381)
T ss_pred -CHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHH
Confidence 0001111 12222222 223455677888999999889999999999999999988 699999999
Q ss_pred HHhh
Q 010109 124 IFFA 127 (518)
Q Consensus 124 aF~~ 127 (518)
+-+-
T Consensus 325 A~Li 328 (381)
T PLN02988 325 AILV 328 (381)
T ss_pred HHhc
Confidence 8765
No 249
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.66 E-value=0.00025 Score=70.20 Aligned_cols=70 Identities=24% Similarity=0.208 Sum_probs=49.5
Q ss_pred ceEEEEEeCCcchHHHHHHHHhC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 010109 147 VKKVAILGGGLMGSGIATALILS--NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~--G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (518)
..||||||+|.||..++..+... +++|. ++|+++++.+...+ +.|. ....+++++
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~----------~~g~------------~~~~~~~ee 63 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIW----------GLRR------------PPPVVPLDQ 63 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHH----------hcCC------------CcccCCHHH
Confidence 47999999999999999999863 78876 88999887654321 0110 112233433
Q ss_pred -ccCCCEEEEecccCh
Q 010109 224 -FKDVDMVIEAIIENV 238 (518)
Q Consensus 224 -~~~aDlVIeav~e~~ 238 (518)
+.++|+|++|+|.+.
T Consensus 64 ll~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 64 LATHADIVVEAAPASV 79 (271)
T ss_pred HhcCCCEEEECCCcHH
Confidence 578999999999764
No 250
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.65 E-value=5.2e-05 Score=76.88 Aligned_cols=101 Identities=16% Similarity=0.132 Sum_probs=65.2
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--cc
Q 010109 148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--LL 215 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~i 215 (518)
+||+|||+ |.+|+++|..++..|+ +++|+|++++. ++.-...+.. .. + .... .+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~--------~~-~-----~~~~~~~i 68 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELED--------CA-F-----PLLAEIVI 68 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhh--------cc-c-----cccCceEE
Confidence 59999999 9999999999998887 79999996532 3221111110 00 0 0011 23
Q ss_pred ccccCcccccCCCEEEEeccc--------------ChHhHHHHHHHHhhhCCCCcEEEEcCC
Q 010109 216 TGVLDYESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNTS 263 (518)
Q Consensus 216 ~~~~~~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~sntS 263 (518)
+ +.+++++++||+||.+.-. +..+-+++..+|.++.+++++++..|.
T Consensus 69 ~-~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (322)
T cd01338 69 T-DDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGN 129 (322)
T ss_pred e-cCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 3 4578999999999987721 122445566678888766776655543
No 251
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.61 E-value=0.00026 Score=71.05 Aligned_cols=91 Identities=19% Similarity=0.235 Sum_probs=63.2
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (518)
+||+|||+|.+|..++..+...|.+|+++|++++..+.+. +.|.. .+ ...++ +.+.+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~-----------~~G~~----------~~-~~~~l~~~l~~ 210 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARIT-----------EMGLS----------PF-HLSELAEEVGK 210 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HcCCe----------ee-cHHHHHHHhCC
Confidence 5899999999999999999999999999999987654422 11210 00 00122 34678
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCc
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (518)
+|+||.++|... +-++..+.++++++++...|..
T Consensus 211 aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla~~p 244 (296)
T PRK08306 211 IDIIFNTIPALV-----LTKEVLSKMPPEALIIDLASKP 244 (296)
T ss_pred CCEEEECCChhh-----hhHHHHHcCCCCcEEEEEccCC
Confidence 999999998532 2234445677888887666543
No 252
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.61 E-value=0.00027 Score=71.43 Aligned_cols=108 Identities=19% Similarity=0.135 Sum_probs=75.5
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (518)
++|||||.|.+|+.+|..+..-|.+|..||+.....+ .+ +. ..+++ .++.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~---------------~~-------------~~-~~~l~ell~~ 196 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKN---------------EE-------------YE-RVSLEELLKT 196 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccc---------------cC-------------ce-eecHHHHhhc
Confidence 6899999999999999999888999999998632100 00 00 12343 4789
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCC-C--cchhhhhhhccCc-Cceeecccc
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-T--IDLNLIGERTYSK-DRIVGAHFF 286 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS-~--l~i~~la~~~~~~-~r~ig~hf~ 286 (518)
||+|+.++|-..+.+.-+=++..+.++++++|+ |+| + ++-+.+.+++... -. .++-.|
T Consensus 197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lI-N~aRG~vVDe~AL~~AL~~g~i~-AaLDV~ 258 (311)
T PRK08410 197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILI-NVGRGGIVNEKDLAKALDEKDIY-AGLDVL 258 (311)
T ss_pred CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHcCCeE-EEEecC
Confidence 999999999888765555566777899999886 555 3 3445677776432 23 454444
No 253
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.60 E-value=8e-05 Score=76.96 Aligned_cols=97 Identities=15% Similarity=0.227 Sum_probs=66.6
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (518)
++|||||.|.||+.+|..+...|++|.+||+.....+ +. .. ..+++ .+++
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~----------------~~------------~~-~~~l~ell~~ 167 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE----------------GD------------GD-FVSLERILEE 167 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc----------------cC------------cc-ccCHHHHHhh
Confidence 5899999999999999999999999999998543211 00 00 12343 4689
Q ss_pred CCEEEEecccChH---hHHHHH-HHHhhhCCCCcEEEEcCCC---cchhhhhhhc
Q 010109 227 VDMVIEAIIENVS---LKQQIF-ADLEKYCPPHCILASNTST---IDLNLIGERT 274 (518)
Q Consensus 227 aDlVIeav~e~~~---~k~~v~-~~l~~~~~~~~il~sntS~---l~i~~la~~~ 274 (518)
||+|+.++|-..+ --+.++ ++....++++++|+ |+|. +.-..+.+.+
T Consensus 168 aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vVde~AL~~aL 221 (381)
T PRK00257 168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLI-NASRGAVVDNQALREAL 221 (381)
T ss_pred CCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEE-ECCCCcccCHHHHHHHH
Confidence 9999999997652 112333 44666789999886 5553 3334566655
No 254
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=97.59 E-value=0.00018 Score=68.63 Aligned_cols=104 Identities=27% Similarity=0.330 Sum_probs=61.4
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCC---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc----
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN---EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL---- 219 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~---- 219 (518)
.+|.|||+|.+|+.+|..|++.|. +++++|.+ .+.+.+-. .+.. .-|+-..+.+.+.+.++....
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-----~~~~--dvG~~Ka~~a~~~l~~lnp~v~v~~ 101 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQ-----YFIS--QIGMPKVEALKENLLEINPFVEIEA 101 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccE-----eehh--hCCChHHHHHHHHHHHHCCCCEEEE
Confidence 589999999999999999999998 59999998 33333210 0000 112111112222222221111
Q ss_pred --------Cc-ccccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEE
Q 010109 220 --------DY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (518)
Q Consensus 220 --------~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~ 259 (518)
+. +.++++|+||+|+ ++.+.+..+............|.+
T Consensus 102 ~~~~i~~~~~~~~~~~~DvVI~a~-D~~~~r~~l~~~~~~~~~~p~I~~ 149 (212)
T PRK08644 102 HNEKIDEDNIEELFKDCDIVVEAF-DNAETKAMLVETVLEHPGKKLVAA 149 (212)
T ss_pred EeeecCHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHHHHhCCCCEEEe
Confidence 11 3367899999995 677777777766655433333444
No 255
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.56 E-value=7.9e-05 Score=75.58 Aligned_cols=98 Identities=21% Similarity=0.243 Sum_probs=62.9
Q ss_pred EEEEEeC-CcchHHHHHHHHhCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhc--cc
Q 010109 149 KVAILGG-GLMGSGIATALILSNY-------PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFE-KTIS--LL 215 (518)
Q Consensus 149 kV~VIGa-G~MG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~--~i 215 (518)
||+|||+ |.+|+.+|..++..|+ +++|+|+++ +.++.-...+. +.. .... .+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~---------------d~~~~~~~~~~i 66 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQ---------------DCAFPLLKGVVI 66 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehh---------------hhcccccCCcEE
Confidence 8999999 9999999999998764 499999987 53322111110 000 0011 12
Q ss_pred ccccCcccccCCCEEEEecc--c------------ChHhHHHHHHHHhhhCCCCcEEEEcC
Q 010109 216 TGVLDYESFKDVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHCILASNT 262 (518)
Q Consensus 216 ~~~~~~~~~~~aDlVIeav~--e------------~~~~k~~v~~~l~~~~~~~~il~snt 262 (518)
+ ..+++++++||+||.+.- . +..+-+++..+|.++++++++++..|
T Consensus 67 ~-~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 67 T-TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred e-cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 2 356789999999998761 1 22344556667777766777665554
No 256
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.53 E-value=0.00096 Score=67.78 Aligned_cols=101 Identities=16% Similarity=0.118 Sum_probs=71.4
Q ss_pred eEEEEEeCCcchHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 010109 148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (518)
++|||||.|.+|..+|..+. .-|.+|..+|+....-.. . ..+ .... ++ +.++
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~-~-----------~~~-------------~~~~-~l~ell~ 199 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAE-E-----------RFN-------------ARYC-DLDTLLQ 199 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhH-H-----------hcC-------------cEec-CHHHHHH
Confidence 68999999999999999986 678899999986421110 0 011 1112 34 3478
Q ss_pred CCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC---cchhhhhhhcc
Q 010109 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~la~~~~ 275 (518)
+||+|+.++|-..+.+.-+=++....++++++|+ |+|- ++-+.+.+++.
T Consensus 200 ~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~AL~~AL~ 251 (323)
T PRK15409 200 ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFI-NAGRGPVVDENALIAALQ 251 (323)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 9999999999988866555466777899999886 5553 44456777764
No 257
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.52 E-value=0.00016 Score=63.76 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=52.1
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 010109 148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (518)
++|.|||+|.||++++..|+..|.. |++++|+.++++...+.+ ....+ . .....++ +.+.
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--------~~~~~---------~-~~~~~~~~~~~~ 74 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--------GGVNI---------E-AIPLEDLEEALQ 74 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--------TGCSE---------E-EEEGGGHCHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--------Ccccc---------c-eeeHHHHHHHHh
Confidence 6999999999999999999999987 999999999877644321 00000 0 1111222 3467
Q ss_pred CCCEEEEecccChH
Q 010109 226 DVDMVIEAIIENVS 239 (518)
Q Consensus 226 ~aDlVIeav~e~~~ 239 (518)
++|+||.|+|..+.
T Consensus 75 ~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 75 EADIVINATPSGMP 88 (135)
T ss_dssp TESEEEE-SSTTST
T ss_pred hCCeEEEecCCCCc
Confidence 89999999987653
No 258
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.51 E-value=0.00021 Score=72.51 Aligned_cols=102 Identities=18% Similarity=0.206 Sum_probs=63.2
Q ss_pred EEEEEeC-CcchHHHHHHHHhCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhccccc
Q 010109 149 KVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFE-KTISLLTG 217 (518)
Q Consensus 149 kV~VIGa-G~MG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~~ 217 (518)
||+|||+ |.+|+.+|..++..|+ +++|+|+++.. ++.-. ++-.+.. .....+..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~---------------~Dl~d~~~~~~~~~~~ 65 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVV---------------MELMDCAFPLLDGVVP 65 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeE---------------eehhcccchhcCceec
Confidence 6999999 9999999999998665 59999996542 22100 0000111 11122333
Q ss_pred c-cCcccccCCCEEEEeccc--------------ChHhHHHHHHHHhhhCCCCcEEEEcCCCc
Q 010109 218 V-LDYESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNTSTI 265 (518)
Q Consensus 218 ~-~~~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (518)
+ .+++++++||+||.+.-. +..+-+++..+|.++++++++++..|...
T Consensus 66 ~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPv 128 (324)
T TIGR01758 66 THDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPA 128 (324)
T ss_pred cCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH
Confidence 3 348899999999987621 11234455566777766777766555333
No 259
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.50 E-value=0.00026 Score=71.57 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=30.6
Q ss_pred ccceEEEEEeC-CcchHHHHHHHHhCC--CcEEEEeCC
Q 010109 145 RRVKKVAILGG-GLMGSGIATALILSN--YPVILKEVN 179 (518)
Q Consensus 145 ~~~~kV~VIGa-G~MG~~iA~~la~~G--~~V~l~d~~ 179 (518)
.+++||+|||+ |.+|+.+|..++..+ .++.++|++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~ 43 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV 43 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC
Confidence 45789999999 999999999998666 589999993
No 260
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.50 E-value=0.00018 Score=75.38 Aligned_cols=99 Identities=23% Similarity=0.271 Sum_probs=71.9
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (518)
++|||||.|.+|+.+|..+..-|.+|..||+++... .+ ......+++ .++.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----------------~~------------~~~~~~~l~ell~~ 203 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----------------LG------------NARQVGSLEELLAQ 203 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----------------cC------------CceecCCHHHHHhh
Confidence 689999999999999999999999999999864210 00 011122443 4789
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC---cchhhhhhhcc
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~la~~~~ 275 (518)
||+|+.++|-..+.+.-+=++....++++++|+ |+|- ++-+.+.+++.
T Consensus 204 sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~ 254 (409)
T PRK11790 204 SDVVSLHVPETPSTKNMIGAEELALMKPGAILI-NASRGTVVDIDALADALK 254 (409)
T ss_pred CCEEEEcCCCChHHhhccCHHHHhcCCCCeEEE-ECCCCcccCHHHHHHHHH
Confidence 999999999888765555456777889999886 5553 34456666664
No 261
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=97.49 E-value=0.00014 Score=73.05 Aligned_cols=97 Identities=25% Similarity=0.279 Sum_probs=62.2
Q ss_pred EEeCCcchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCE
Q 010109 152 ILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDM 229 (518)
Q Consensus 152 VIGaG~MG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 229 (518)
|||+|.+|+.+|..++..++ ++.++|++++.++.-...+....... + ....++ +.+++++++||+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~---~---------~~~~i~-~~~~~~~~daDi 67 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFL---P---------TPKKIR-SGDYSDCKDADL 67 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhccc---C---------CCeEEe-cCCHHHHCCCCE
Confidence 69999999999999998886 79999999876654333222211000 0 001233 457899999999
Q ss_pred EEEeccc--------------ChHhHHHHHHHHhhhCCCCcEEEEcC
Q 010109 230 VIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNT 262 (518)
Q Consensus 230 VIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~snt 262 (518)
||.+.-. +..+-+++..++.++. ++++++..|
T Consensus 68 vVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvs 113 (299)
T TIGR01771 68 VVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVAT 113 (299)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeC
Confidence 9997732 2223445556677764 556554444
No 262
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=97.49 E-value=0.00028 Score=67.23 Aligned_cols=93 Identities=12% Similarity=0.147 Sum_probs=79.3
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCchhhhcccCCCCCchHHHHHHHHHHHHHHhhCCCC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (518)
|++.|++++|+||..-|||+++++++.+.+.+..-++++..- |+
T Consensus 171 ~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l--~p---------------------------------- 214 (266)
T KOG0016|consen 171 MLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKL--SP---------------------------------- 214 (266)
T ss_pred HHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcC--CH----------------------------------
Confidence 578999999999999999999999999999999999988774 21
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 010109 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQR 129 (518)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~i~aF~~kr 129 (518)
+.....|++++......+..+.+.|.......+.|+|+-+.+..|+.+.
T Consensus 215 ~sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~ 263 (266)
T KOG0016|consen 215 ESLLGMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKK 263 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence 1334567788877777788899999999999999999999999988754
No 263
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.48 E-value=0.00055 Score=69.40 Aligned_cols=96 Identities=18% Similarity=0.187 Sum_probs=71.0
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (518)
++|||||.|.+|+.+|..+..-|.+|..||+..... . . . ..+++ .++.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~-~-----------------~---------~----~~~l~ell~~ 197 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPA-R-----------------P---------D----RLPLDELLPQ 197 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcc-c-----------------c---------c----ccCHHHHHHh
Confidence 689999999999999999988899999999863210 0 0 0 01343 4789
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCC-C--cchhhhhhhcc
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-T--IDLNLIGERTY 275 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS-~--l~i~~la~~~~ 275 (518)
||+|+.++|-..+.+.-+=++..+.++++++|+ |+| + ++-+.+.+++.
T Consensus 198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lI-N~aRG~vVde~AL~~AL~ 248 (317)
T PRK06487 198 VDALTLHCPLTEHTRHLIGARELALMKPGALLI-NTARGGLVDEQALADALR 248 (317)
T ss_pred CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 999999999888765555566777899999886 555 3 34456767664
No 264
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.48 E-value=0.00048 Score=68.05 Aligned_cols=87 Identities=24% Similarity=0.302 Sum_probs=55.9
Q ss_pred eEEEEEeCCcchHHHHHHHHhC--CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 010109 148 KKVAILGGGLMGSGIATALILS--NYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~--G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (518)
+||+|||+|.||..++..+.+. +++ +.++|+++++.+...+ ..+ ....+++++
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~----------~~~-------------~~~~~~~~el 58 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLAS----------KTG-------------AKACLSIDEL 58 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHH----------hcC-------------CeeECCHHHH
Confidence 5899999999999999998876 455 5689999987665321 011 112334544
Q ss_pred ccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEE
Q 010109 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (518)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~s 260 (518)
+.++|+|++|+|.+. -.++..++.+. ..+.++.|
T Consensus 59 l~~~DvVvi~a~~~~--~~~~~~~al~~-Gk~Vvv~s 92 (265)
T PRK13304 59 VEDVDLVVECASVNA--VEEVVPKSLEN-GKDVIIMS 92 (265)
T ss_pred hcCCCEEEEcCChHH--HHHHHHHHHHc-CCCEEEEc
Confidence 488999999997543 23444444332 34444433
No 265
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=97.47 E-value=0.00015 Score=70.59 Aligned_cols=42 Identities=21% Similarity=0.378 Sum_probs=38.6
Q ss_pred CcccCCCCCHHHHHhCCCcceecCC-chHHHHHHHHHHhhhhc
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEH 42 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~l~~~ 42 (518)
|+++|++++|+||+++||||+|+|+ +++.+.|.++|++++..
T Consensus 160 llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~ 202 (239)
T PLN02267 160 VLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAAR 202 (239)
T ss_pred HHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhc
Confidence 5789999999999999999999985 68999999999999875
No 266
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.43 E-value=0.00084 Score=70.04 Aligned_cols=86 Identities=20% Similarity=0.161 Sum_probs=61.4
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (518)
++|+|+|+|.+|..++..+...|.+|+++|+++.+++.+.. .|.- .....+.+.++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~-----------~G~~-------------~~~~~e~v~~a 258 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM-----------EGYE-------------VMTMEEAVKEG 258 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh-----------cCCE-------------EccHHHHHcCC
Confidence 58999999999999999999999999999999988766431 2320 00111345789
Q ss_pred CEEEEecccChHhHHHHHH-HHhhhCCCCcEEEEcC
Q 010109 228 DMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNT 262 (518)
Q Consensus 228 DlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~snt 262 (518)
|+||+|+... .++. .....++++++++..+
T Consensus 259 DVVI~atG~~-----~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 259 DIFVTTTGNK-----DIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CEEEECCCCH-----HHHHHHHHhcCCCCcEEEEeC
Confidence 9999998543 2333 3455678888876443
No 267
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.42 E-value=0.00034 Score=69.59 Aligned_cols=71 Identities=17% Similarity=0.299 Sum_probs=54.4
Q ss_pred eEEEEEe-CCcchHHHHHHHHhCCCcEEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 010109 148 KKVAILG-GGLMGSGIATALILSNYPVILKE-VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (518)
Q Consensus 148 ~kV~VIG-aG~MG~~iA~~la~~G~~V~l~d-~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (518)
++|+||| .|.||.+||..|.++|++|++|+ ++++ ++ +.++
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~-l~-------------------------------------e~~~ 200 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRD-LP-------------------------------------AVCR 200 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCC-HH-------------------------------------HHHh
Confidence 5899999 99999999999999999999995 5542 11 2346
Q ss_pred CCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCC
Q 010109 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (518)
.||+||.|++....+... .+++++++++.+.
T Consensus 201 ~ADIVIsavg~~~~v~~~-------~lk~GavVIDvGi 231 (296)
T PRK14188 201 RADILVAAVGRPEMVKGD-------WIKPGATVIDVGI 231 (296)
T ss_pred cCCEEEEecCChhhcchh-------eecCCCEEEEcCC
Confidence 799999999876443322 2788998876543
No 268
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.42 E-value=0.00051 Score=69.59 Aligned_cols=93 Identities=18% Similarity=0.163 Sum_probs=60.9
Q ss_pred ceEEEEEeCCcchHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 010109 147 VKKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (518)
-++|+|||+|.||..++..+.. ...+|++|+|++++.+...+++.+ .|. .+....+. +.
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~-----------~~~~~~~~~~a 186 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF-----------DAEVVTDLEAA 186 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------ceEEeCCHHHH
Confidence 3589999999999999985554 346899999999988775543211 110 12223343 45
Q ss_pred ccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCC
Q 010109 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (518)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (518)
+.+||+||.|.+... .++.. +.+++++.+...+|
T Consensus 187 v~~aDIVi~aT~s~~----pvl~~--~~l~~g~~i~~ig~ 220 (314)
T PRK06141 187 VRQADIISCATLSTE----PLVRG--EWLKPGTHLDLVGN 220 (314)
T ss_pred HhcCCEEEEeeCCCC----CEecH--HHcCCCCEEEeeCC
Confidence 789999998887652 22321 35677876654444
No 269
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.42 E-value=0.00075 Score=70.10 Aligned_cols=185 Identities=14% Similarity=0.126 Sum_probs=108.4
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEE------EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVIL------KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l------~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (518)
++|+|||.|..|..-|..+...|++|++ +|.+.+.-+.+. +.|- ...+..
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~-----------~dGF-------------~v~~~~ 92 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKAT-----------ENGF-------------KVGTYE 92 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHH-----------hcCC-------------ccCCHH
Confidence 6999999999999999999999999993 333333333322 1221 122223
Q ss_pred ccccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccC----------C
Q 010109 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH----------V 291 (518)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~----------~ 291 (518)
+.++.||+|+..+|+. . ...+++++.+.++++++|.- +-+..|..-.-..+....++-+-|-.|-+ .
T Consensus 93 Ea~~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~f-sHGFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~G 169 (487)
T PRK05225 93 ELIPQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALGY-SHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFG 169 (487)
T ss_pred HHHHhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEEe-cCCceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCC
Confidence 5689999999999987 3 67888999999999998853 33444432211111112233232322221 1
Q ss_pred CC-eEEEEeCCCCcHHHHHHHHHHHHhcCCc---EEEeC---C-cccchhhh-hHHHHH---HHHH--HHHHcCCCHHHH
Q 010109 292 MP-LLEIVRTNQTSPQVIVDLLDIGKKIKKT---PIVVG---N-CTGFAVNR-MFFPYT---QAAF--LLVERGTDLYLI 357 (518)
Q Consensus 292 ~~-lveiv~g~~t~~e~~~~~~~l~~~lGk~---~v~v~---d-~~Gfi~nr-il~~~~---~Ea~--~l~~~G~~~~~I 357 (518)
.| ++.|-+-...+....+.+..+...+|.. .+... + ....+..| +|+..+ .+++ .|+++|.+|+.-
T Consensus 170 vp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A 249 (487)
T PRK05225 170 VPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYA 249 (487)
T ss_pred ceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 12 3334322344556788899999999865 22221 1 12233333 333332 3332 567899988775
Q ss_pred HH
Q 010109 358 DR 359 (518)
Q Consensus 358 D~ 359 (518)
-.
T Consensus 250 ~k 251 (487)
T PRK05225 250 EK 251 (487)
T ss_pred HH
Confidence 43
No 270
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.39 E-value=0.0021 Score=63.85 Aligned_cols=162 Identities=14% Similarity=0.172 Sum_probs=88.6
Q ss_pred eEEEEEeCCcchHHHHHHHHh-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc-
Q 010109 148 KKVAILGGGLMGSGIATALIL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF- 224 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 224 (518)
-|||+||+|-||++|+...++ .|++|. +.|++.+...++..+.-.--...++....+.....-..+++..|.|.+.+
T Consensus 18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~ 97 (438)
T COG4091 18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELII 97 (438)
T ss_pred eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhh
Confidence 499999999999999987654 699876 55999888777665321000001111111111111122345566665543
Q ss_pred --cCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCC-CcchhhhhhhccCcCceeecccccccCCCCeEEEEeCC
Q 010109 225 --KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-TIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTN 301 (518)
Q Consensus 225 --~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS-~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~g~ 301 (518)
...|+||++.--..---+-.+.. ......++..|.- ...|.-+.... .+-.|+ ....+.
T Consensus 98 ~~~~IdvIIdATG~p~vGA~~~l~A---i~h~KHlVMmNVEaDvtIGp~Lk~~---Ad~~Gv------------iyS~~~ 159 (438)
T COG4091 98 ANDLIDVIIDATGVPEVGAKIALEA---ILHGKHLVMMNVEADVTIGPILKQQ---ADAAGV------------IYSGGA 159 (438)
T ss_pred cCCcceEEEEcCCCcchhhHhHHHH---HhcCCeEEEEEeeeceeecHHHHHH---HhhcCe------------EEeccC
Confidence 45688898873221111222333 3345556655542 23332222111 111232 223344
Q ss_pred CCcHHHHHHHHHHHHhcCCcEEEeCC
Q 010109 302 QTSPQVIVDLLDIGKKIKKTPIVVGN 327 (518)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (518)
...|...-...+|.+++|.+++..+.
T Consensus 160 GDeP~~~mEL~efa~a~G~evv~aGK 185 (438)
T COG4091 160 GDEPSSCMELYEFASALGFEVVSAGK 185 (438)
T ss_pred CCCcHHHHHHHHHHHhcCCeEEeccC
Confidence 45677788889999999999999874
No 271
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=97.38 E-value=0.00073 Score=64.82 Aligned_cols=109 Identities=23% Similarity=0.394 Sum_probs=71.3
Q ss_pred cceEEEEEeCCcchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 010109 146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (518)
Q Consensus 146 ~~~kV~VIGaG~MG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (518)
...||.|||.|..|.++|..++.+|. ++.++|.++++++...-.+ +.|.. --...++....||..
T Consensus 19 ~~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDL--------qH~s~-----f~~~~~V~~~~Dy~~ 85 (332)
T KOG1495|consen 19 KHNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDL--------QHGSA-----FLSTPNVVASKDYSV 85 (332)
T ss_pred cCceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhh--------ccccc-----cccCCceEecCcccc
Confidence 36799999999999999999999886 8999999999876532111 11110 012246777778999
Q ss_pred ccCCCEEEEecccC-------hHhHH---HHHHHHhh---hCCCCcEEEEcCCCcch
Q 010109 224 FKDVDMVIEAIIEN-------VSLKQ---QIFADLEK---YCPPHCILASNTSTIDL 267 (518)
Q Consensus 224 ~~~aDlVIeav~e~-------~~~k~---~v~~~l~~---~~~~~~il~sntS~l~i 267 (518)
.+++++||..+-.. +++.| ++|+.+-+ ..+|++++...+-..++
T Consensus 86 sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDi 142 (332)
T KOG1495|consen 86 SANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDI 142 (332)
T ss_pred cCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHH
Confidence 99999999877321 11111 34444332 23678866544444444
No 272
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.38 E-value=0.0011 Score=62.50 Aligned_cols=39 Identities=28% Similarity=0.425 Sum_probs=35.8
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (518)
++|+|+|.|.||..+|+.|.+.|++|+++|+++++++..
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~ 67 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARA 67 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 589999999999999999999999999999998876653
No 273
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.37 E-value=0.00022 Score=73.51 Aligned_cols=97 Identities=15% Similarity=0.114 Sum_probs=66.0
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-ccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 226 (518)
++|||||.|.||+.+|..+...|.+|.+||+.... . +. ... ..+++. +++
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~---------------~~-----------~~~-~~~L~ell~~ 167 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R---------------GD-----------EGD-FRSLDELVQE 167 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c---------------cc-----------ccc-cCCHHHHHhh
Confidence 58999999999999999999999999999974321 0 00 000 123444 689
Q ss_pred CCEEEEecccChH----hHHHHHHHHhhhCCCCcEEEEcCCC---cchhhhhhhc
Q 010109 227 VDMVIEAIIENVS----LKQQIFADLEKYCPPHCILASNTST---IDLNLIGERT 274 (518)
Q Consensus 227 aDlVIeav~e~~~----~k~~v~~~l~~~~~~~~il~sntS~---l~i~~la~~~ 274 (518)
||+|+..+|-..+ ...-+=++....++++++|+ |+|- ++-+.+.+.+
T Consensus 168 sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vVDe~AL~~aL 221 (378)
T PRK15438 168 ADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILI-NACRGAVVDNTALLTCL 221 (378)
T ss_pred CCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEE-ECCCchhcCHHHHHHHH
Confidence 9999999986543 22222245666789999886 5553 3444666665
No 274
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.36 E-value=0.00029 Score=72.45 Aligned_cols=77 Identities=25% Similarity=0.298 Sum_probs=55.6
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC----c
Q 010109 147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD----Y 221 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~----~ 221 (518)
++||.|||+|.+|+.+|..|+++| .+|++.||+.+++++...... +++...+ +. ..+ .
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---------~~v~~~~-------vD-~~d~~al~ 63 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---------GKVEALQ-------VD-AADVDALV 63 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---------ccceeEE-------ec-ccChHHHH
Confidence 478999999999999999999999 899999999999887643211 1111100 00 111 1
Q ss_pred ccccCCCEEEEecccChHh
Q 010109 222 ESFKDVDMVIEAIIENVSL 240 (518)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~ 240 (518)
+.+++.|+||.|+|.....
T Consensus 64 ~li~~~d~VIn~~p~~~~~ 82 (389)
T COG1748 64 ALIKDFDLVINAAPPFVDL 82 (389)
T ss_pred HHHhcCCEEEEeCCchhhH
Confidence 4478889999999977553
No 275
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.35 E-value=0.00096 Score=69.39 Aligned_cols=97 Identities=24% Similarity=0.166 Sum_probs=65.6
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (518)
++|+|+|.|.+|.++|+.+...|.+|+++|+++.....+. ..|. ......+.++++
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-----------~~G~-------------~v~~leeal~~a 251 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-----------MDGF-------------RVMTMEEAAKIG 251 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-----------hcCC-------------EeCCHHHHHhcC
Confidence 5899999999999999999999999999999997644322 1221 001112346789
Q ss_pred CEEEEecccChHhHHHHHH-HHhhhCCCCcEEEEcCCC---cchhhhhhh
Q 010109 228 DMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTST---IDLNLIGER 273 (518)
Q Consensus 228 DlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~sntS~---l~i~~la~~ 273 (518)
|+||+++... .++. +....++++++++..+.. ++...+.+.
T Consensus 252 DVVItaTG~~-----~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~ 296 (406)
T TIGR00936 252 DIFITATGNK-----DVIRGEHFENMKDGAIVANIGHFDVEIDVKALEEL 296 (406)
T ss_pred CEEEECCCCH-----HHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHH
Confidence 9999987532 3333 355678899988654432 444555543
No 276
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.34 E-value=0.0017 Score=62.47 Aligned_cols=96 Identities=23% Similarity=0.300 Sum_probs=64.2
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC---c--c
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD---Y--E 222 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~---~--~ 222 (518)
|+|.|||+|.+|..+|..|.+.||+|+++|.+++.+++.... .+...+-.| -.++ + .
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~---~~~~~~v~g---------------d~t~~~~L~~a 62 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD---ELDTHVVIG---------------DATDEDVLEEA 62 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh---hcceEEEEe---------------cCCCHHHHHhc
Confidence 589999999999999999999999999999999988763210 000000000 0112 1 2
Q ss_pred cccCCCEEEEecccChHhHHHHHHHHhhh-CCCCcEEEEcCC
Q 010109 223 SFKDVDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTS 263 (518)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~-~~~~~il~sntS 263 (518)
.+.++|.+|-++.++. ...++..+... +....+++-..+
T Consensus 63 gi~~aD~vva~t~~d~--~N~i~~~la~~~~gv~~viar~~~ 102 (225)
T COG0569 63 GIDDADAVVAATGNDE--VNSVLALLALKEFGVPRVIARARN 102 (225)
T ss_pred CCCcCCEEEEeeCCCH--HHHHHHHHHHHhcCCCcEEEEecC
Confidence 3789999999997764 35666665543 455566664444
No 277
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.34 E-value=0.0009 Score=67.76 Aligned_cols=94 Identities=19% Similarity=0.104 Sum_probs=58.9
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 010109 147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (518)
-++|+|||+|.||..++..+...| .+|+++|+++++.+...+. .|. . .+....-.+.+.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~----------~g~-~---------~~~~~~~~~~l~ 237 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKE----------LGG-N---------AVPLDELLELLN 237 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH----------cCC-e---------EEeHHHHHHHHh
Confidence 368999999999999999998865 6899999999876553221 111 0 000111123467
Q ss_pred CCCEEEEecccChHhHHHHHHHHhhhC-CCCcEEEEcC
Q 010109 226 DVDMVIEAIIENVSLKQQIFADLEKYC-PPHCILASNT 262 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~-~~~~il~snt 262 (518)
++|+||.|++.... ..++..+.... ..+.+++..+
T Consensus 238 ~aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 238 EADVVISATGAPHY--AKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred cCCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEEeC
Confidence 89999999986643 33344432222 2345665543
No 278
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.31 E-value=0.0014 Score=66.47 Aligned_cols=97 Identities=18% Similarity=0.229 Sum_probs=70.7
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (518)
++|||||.|.+|+.+|..+..-|.+|+.||+.... .. ..+ ..++ +.++.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~------------~~~----------------~~~l~ell~~ 197 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC------------REG----------------YTPFEEVLKQ 197 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc------------ccc----------------cCCHHHHHHh
Confidence 68999999999999999998889999999975321 00 000 1134 34789
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC---cchhhhhhhcc
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~la~~~~ 275 (518)
||+|+.++|-..+.+.-+=++....++++++|+ |+|- ++-+.+.+++.
T Consensus 198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~Vde~AL~~aL~ 248 (314)
T PRK06932 198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLI-NTGRGPLVDEQALLDALE 248 (314)
T ss_pred CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 999999999888765555466777889999886 5552 44557777764
No 279
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.29 E-value=0.0019 Score=61.21 Aligned_cols=131 Identities=15% Similarity=0.218 Sum_probs=80.3
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (518)
++|.|||+|.+|..-+..|++.|.+|++++.+.. .+. .+.+.|.+. .+...-..+++.+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~-----------~l~~~~~i~---------~~~~~~~~~dl~~ 69 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELT-----------LLAEQGGIT---------WLARCFDADILEG 69 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHH-----------HHHHcCCEE---------EEeCCCCHHHhCC
Confidence 5899999999999999999999999999987653 111 122333221 1111112345889
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeeccccccc--CCCCeEEEEeCCCCc
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTS 304 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~--~~~~lveiv~g~~t~ 304 (518)
+|+||-|. ++.++...++... ....+++.+.+.. +. ..|+.|. ...+++--|.+.+.+
T Consensus 70 ~~lVi~at-~d~~ln~~i~~~a----~~~~ilvn~~d~~------------e~---~~f~~pa~~~~g~l~iaisT~G~s 129 (205)
T TIGR01470 70 AFLVIAAT-DDEELNRRVAHAA----RARGVPVNVVDDP------------EL---CSFIFPSIVDRSPVVVAISSGGAA 129 (205)
T ss_pred cEEEEECC-CCHHHHHHHHHHH----HHcCCEEEECCCc------------cc---CeEEEeeEEEcCCEEEEEECCCCC
Confidence 99999775 4555655555543 3334444333221 11 2355563 445666667777788
Q ss_pred HHHHHHHHHHHHhc
Q 010109 305 PQVIVDLLDIGKKI 318 (518)
Q Consensus 305 ~e~~~~~~~l~~~l 318 (518)
|.....+++-++.+
T Consensus 130 P~la~~lr~~ie~~ 143 (205)
T TIGR01470 130 PVLARLLRERIETL 143 (205)
T ss_pred cHHHHHHHHHHHHh
Confidence 87777777666553
No 280
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.29 E-value=0.00045 Score=68.46 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=36.1
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (518)
++|.|+|+|.||.+++..|+..|++|+++++++++++...
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la 157 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELA 157 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 5899999999999999999999999999999988776543
No 281
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=97.28 E-value=0.00066 Score=68.73 Aligned_cols=102 Identities=22% Similarity=0.135 Sum_probs=73.5
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (518)
+++||||.|.+|..+|+.+.--|.+|..||+++. -+. . +.+ ......-.+.+++|
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~-~-----------~~~------------~~~y~~l~ell~~s 201 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEA-E-----------KEL------------GARYVDLDELLAES 201 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHH-H-----------hhc------------CceeccHHHHHHhC
Confidence 6999999999999999999877889999999874 111 0 000 01122222458999
Q ss_pred CEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC---cchhhhhhhcc
Q 010109 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (518)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~la~~~~ 275 (518)
|+|+..+|-..+..+-+=++..+.++++++|+ ||+- ++-..+.+++.
T Consensus 202 Dii~l~~Plt~~T~hLin~~~l~~mk~ga~lV-NtaRG~~VDe~ALi~AL~ 251 (324)
T COG1052 202 DIISLHCPLTPETRHLINAEELAKMKPGAILV-NTARGGLVDEQALIDALK 251 (324)
T ss_pred CEEEEeCCCChHHhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 99999999998876666667778899999885 6763 34456666664
No 282
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.28 E-value=0.001 Score=69.65 Aligned_cols=87 Identities=22% Similarity=0.145 Sum_probs=61.2
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (518)
++|+|+|.|.+|.++|..+...|.+|+++|+++.+...+. ..|. ....-.+.++++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~-----------~~G~-------------~v~~l~eal~~a 268 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAA-----------MDGF-------------RVMTMEEAAELG 268 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHH-----------hcCC-------------EecCHHHHHhCC
Confidence 5799999999999999999999999999999987654322 1121 001111346789
Q ss_pred CEEEEecccChHhHHHHHH-HHhhhCCCCcEEEEcCC
Q 010109 228 DMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTS 263 (518)
Q Consensus 228 DlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~sntS 263 (518)
|+||+++... .++. +....++++++++...+
T Consensus 269 DVVI~aTG~~-----~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 269 DIFVTATGNK-----DVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred CEEEECCCCH-----HHHHHHHHhcCCCCCEEEEcCC
Confidence 9999987432 3443 45667889998865443
No 283
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.22 E-value=0.0031 Score=59.65 Aligned_cols=129 Identities=22% Similarity=0.259 Sum_probs=78.3
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (518)
++|.|||+|.+|...+..|.++|.+|++++++.. .+.. +.+.+.+.- ....-..+++.+
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~-----------l~~~~~i~~---------~~~~~~~~~l~~ 70 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVK-----------LVEEGKIRW---------KQKEFEPSDIVD 70 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHH-----------HHhCCCEEE---------EecCCChhhcCC
Confidence 5899999999999999999999999999986532 1211 122232210 000111346889
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeeccccccc--CCCCeEEEEeCCCCc
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTS 304 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~--~~~~lveiv~g~~t~ 304 (518)
+|+||-|+. +.++...+... +..+ +++.+.. .|+. ..|+.|. ...+++.-|.+.+.+
T Consensus 71 adlViaaT~-d~elN~~i~~~----a~~~-~lvn~~d------------~~~~---~~f~~Pa~~~~g~l~iaIsT~G~s 129 (202)
T PRK06718 71 AFLVIAATN-DPRVNEQVKED----LPEN-ALFNVIT------------DAES---GNVVFPSALHRGKLTISVSTDGAS 129 (202)
T ss_pred ceEEEEcCC-CHHHHHHHHHH----HHhC-CcEEECC------------CCcc---CeEEEeeEEEcCCeEEEEECCCCC
Confidence 999998764 45555555433 3233 3433221 2222 2455664 345666667777788
Q ss_pred HHHHHHHHHHHHh
Q 010109 305 PQVIVDLLDIGKK 317 (518)
Q Consensus 305 ~e~~~~~~~l~~~ 317 (518)
|.....+++-++.
T Consensus 130 P~la~~lr~~ie~ 142 (202)
T PRK06718 130 PKLAKKIRDELEA 142 (202)
T ss_pred hHHHHHHHHHHHH
Confidence 8877777766655
No 284
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=97.21 E-value=0.0037 Score=65.84 Aligned_cols=75 Identities=23% Similarity=0.344 Sum_probs=50.0
Q ss_pred eEEEEEeCCcc-hHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 010109 148 KKVAILGGGLM-GSGIATALILS-----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (518)
Q Consensus 148 ~kV~VIGaG~M-G~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (518)
+||+|||+|.- ...+...+++. +-+|+++|+++++++... ...++..+....+ -++..|+|.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~----~l~~~~~~~~g~~--------~~v~~ttD~ 68 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIIL----TIAKRYVEEVGAD--------IKFEKTMDL 68 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHH----HHHHHHHHhhCCC--------eEEEEeCCH
Confidence 48999999873 44555555543 458999999999987632 2222333321111 246677776
Q ss_pred -ccccCCCEEEEec
Q 010109 222 -ESFKDVDMVIEAI 234 (518)
Q Consensus 222 -~~~~~aDlVIeav 234 (518)
+++.+||+||.++
T Consensus 69 ~~Al~gADfVi~~i 82 (425)
T cd05197 69 EDAIIDADFVINQF 82 (425)
T ss_pred HHHhCCCCEEEEee
Confidence 5799999999877
No 285
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=97.20 E-value=0.0024 Score=58.93 Aligned_cols=74 Identities=23% Similarity=0.312 Sum_probs=46.5
Q ss_pred EEEEEeCCcchHHHHH--HHHhC----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-
Q 010109 149 KVAILGGGLMGSGIAT--ALILS----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY- 221 (518)
Q Consensus 149 kV~VIGaG~MG~~iA~--~la~~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (518)
||+|||+|..-.+.-. .+... +-+++++|+|+++++....-.+.. ++.-..+ -++..++|.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~----~~~~~~~--------~~v~~ttd~~ 68 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRM----VEEAGAD--------LKVEATTDRR 68 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHH----HHHCTTS--------SEEEEESSHH
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHH----HHhcCCC--------eEEEEeCCHH
Confidence 7999999988665332 23332 348999999999988644333322 2221111 256677887
Q ss_pred ccccCCCEEEEec
Q 010109 222 ESFKDVDMVIEAI 234 (518)
Q Consensus 222 ~~~~~aDlVIeav 234 (518)
+++++||+||.++
T Consensus 69 eAl~gADfVi~~i 81 (183)
T PF02056_consen 69 EALEGADFVINQI 81 (183)
T ss_dssp HHHTTESEEEE--
T ss_pred HHhCCCCEEEEEe
Confidence 5699999999877
No 286
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.16 E-value=0.001 Score=66.34 Aligned_cols=74 Identities=20% Similarity=0.219 Sum_probs=51.3
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-ccccc
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFK 225 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~ 225 (518)
++|.|||+|.+|++++..|+..|. +|+++||+.++++...+.+...+ +. ..+....+ .+.+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~------~~----------~~~~~~~~~~~~~~ 191 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF------PA----------ARATAGSDLAAALA 191 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC------CC----------eEEEeccchHhhhC
Confidence 689999999999999999999998 79999999988776443321110 00 01111112 23467
Q ss_pred CCCEEEEecccC
Q 010109 226 DVDMVIEAIIEN 237 (518)
Q Consensus 226 ~aDlVIeav~e~ 237 (518)
++|+||.|+|-.
T Consensus 192 ~aDiVInaTp~G 203 (284)
T PRK12549 192 AADGLVHATPTG 203 (284)
T ss_pred CCCEEEECCcCC
Confidence 789999888754
No 287
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=97.16 E-value=0.0019 Score=67.79 Aligned_cols=75 Identities=25% Similarity=0.306 Sum_probs=48.7
Q ss_pred eEEEEEeCCcchH-HHHHHHHhC-----CCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 010109 148 KKVAILGGGLMGS-GIATALILS-----NYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (518)
Q Consensus 148 ~kV~VIGaG~MG~-~iA~~la~~-----G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (518)
+||+|||+|..-+ .+...+++. +-+|+++|++ +++++.... ...+..+....+ -++..|+|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~----~~~~~~~~~~~~--------~~v~~t~d 68 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGA----LAKRMVKKAGLP--------IKVHLTTD 68 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHH----HHHHHHHhhCCC--------eEEEEeCC
Confidence 5899999998633 455555552 3589999999 788765322 222222221111 14666777
Q ss_pred c-ccccCCCEEEEec
Q 010109 221 Y-ESFKDVDMVIEAI 234 (518)
Q Consensus 221 ~-~~~~~aDlVIeav 234 (518)
. +++.+||+||.++
T Consensus 69 ~~~al~gadfVi~~~ 83 (419)
T cd05296 69 RREALEGADFVFTQI 83 (419)
T ss_pred HHHHhCCCCEEEEEE
Confidence 6 5689999999887
No 288
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=97.15 E-value=0.0032 Score=66.43 Aligned_cols=75 Identities=24% Similarity=0.298 Sum_probs=50.1
Q ss_pred eEEEEEeCCcc-hHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 010109 148 KKVAILGGGLM-GSGIATALILS-----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (518)
Q Consensus 148 ~kV~VIGaG~M-G~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (518)
+||+|||+|.. +..+...+++. +-+|+++|+++++++... ...++.+++...+ -++..|+|.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~----~l~~~~~~~~g~~--------~~v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVA----EAVKILFKENYPE--------IKFVYTTDP 68 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHH----HHHHHHHHhhCCC--------eEEEEECCH
Confidence 59999999875 33455555543 458999999999987632 2233333321111 256677776
Q ss_pred -ccccCCCEEEEec
Q 010109 222 -ESFKDVDMVIEAI 234 (518)
Q Consensus 222 -~~~~~aDlVIeav 234 (518)
+++++||+||.++
T Consensus 69 ~eAl~gADfVi~~i 82 (437)
T cd05298 69 EEAFTDADFVFAQI 82 (437)
T ss_pred HHHhCCCCEEEEEe
Confidence 6799999999877
No 289
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=97.15 E-value=0.0019 Score=67.38 Aligned_cols=124 Identities=16% Similarity=0.120 Sum_probs=79.6
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcCCCch--hh--hcccC-----------------CCCCc
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWV--AT--LYKTD-----------------KIEPL 59 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~--~~--~~~~~-----------------~~~~~ 59 (518)
|+|||++++|++|+++||+|++||++++ +.+.+++.++.... +.. .. .+... .+...
T Consensus 201 L~LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~ 278 (407)
T PLN02851 201 LALTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKLLTDD-PAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHD 278 (407)
T ss_pred HHHhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhhccCC-HHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCC
Confidence 5789999999999999999999999877 56666665443220 000 00 00000 00000
Q ss_pred hHHHHHH------------HHHHHHHHh-hCCCCCcHHHHHHHHHHhhhCChHHHHHHHHHHHHHHh---CCHHHHHHHH
Q 010109 60 GEAREIF------------KFARAQARK-QAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLL---RSETCKSLVH 123 (518)
Q Consensus 60 ~~~~~~~------------~~a~~~~~~-~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~---~s~~a~~~i~ 123 (518)
....++ ..+++.+.. ..+.+.+...+.+.++.+..+++++.|+.|.+.-..++ .++|+.++++
T Consensus 279 -sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVR 357 (407)
T PLN02851 279 -TVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVR 357 (407)
T ss_pred -CHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHH
Confidence 000111 112222222 22345567788889999988999999999999988887 4899999999
Q ss_pred HHhh
Q 010109 124 IFFA 127 (518)
Q Consensus 124 aF~~ 127 (518)
+-+-
T Consensus 358 A~LI 361 (407)
T PLN02851 358 ARLV 361 (407)
T ss_pred HHhc
Confidence 8764
No 290
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=97.15 E-value=0.0038 Score=62.31 Aligned_cols=158 Identities=16% Similarity=0.080 Sum_probs=89.4
Q ss_pred cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccCcccccCCCEEEEecc
Q 010109 157 LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235 (518)
Q Consensus 157 ~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~ 235 (518)
.||+.+|..|+++|++|++++++ +.++... +.|. +...........+..+++.+.+..+|+||.|++
T Consensus 1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~-----------~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vK 68 (293)
T TIGR00745 1 AVGSLYGAYLARAGHDVTLLARG-EQLEALN-----------QEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVK 68 (293)
T ss_pred CchHHHHHHHHhCCCcEEEEecH-HHHHHHH-----------HCCcEEEecCCcEEEcccccccChhhcCCCCEEEEecc
Confidence 37999999999999999999997 4444321 1221 000000000002233444555779999999998
Q ss_pred cChHhHHHHHHHHhhhCCCCcEEEEcCCCcchh-hhhhhccCcCceeec-ccc-----cccCC----CCeEEEEeCCCCc
Q 010109 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIVGA-HFF-----SPAHV----MPLLEIVRTNQTS 304 (518)
Q Consensus 236 e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~-~la~~~~~~~r~ig~-hf~-----~P~~~----~~lveiv~g~~t~ 304 (518)
... -..+++.+.+.+.++++|++...++... .+...++. .++++. -++ .|... ..-+.+-..+..
T Consensus 69 s~~--~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~-~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~- 144 (293)
T TIGR00745 69 AYQ--TEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLPA-RRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGE- 144 (293)
T ss_pred chh--HHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhCc-cCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCc-
Confidence 652 3577888999999989888777777554 34444432 244332 221 22110 011122222222
Q ss_pred HHHHHHHHHHHHhcCCcEEEeCCccc
Q 010109 305 PQVIVDLLDIGKKIKKTPIVVGNCTG 330 (518)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~v~v~d~~G 330 (518)
.+....+.+++...|.......|..+
T Consensus 145 ~~~~~~l~~~l~~~~~~~~~~~di~~ 170 (293)
T TIGR00745 145 NEAVEALAELLNEAGIPAELHGDILA 170 (293)
T ss_pred hHHHHHHHHHHHhCCCCCEecchHHH
Confidence 24556677777777766655555433
No 291
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.13 E-value=0.00093 Score=67.94 Aligned_cols=101 Identities=20% Similarity=0.252 Sum_probs=62.9
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCC-------CcEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhcccc
Q 010109 148 KKVAILGG-GLMGSGIATALILSN-------YPVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFE-KTISLLT 216 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G-------~~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~ 216 (518)
.||+|+|+ |..|+.++..|+..+ .+|+++|+++. .++. . .++-.+.. .....+.
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g-~--------------~~Dl~d~~~~~~~~~~ 67 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEG-V--------------VMELQDCAFPLLKSVV 67 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccc-e--------------eeehhhccccccCCce
Confidence 48999999 999999999998855 48999999763 1221 0 01100000 0112333
Q ss_pred cccC-cccccCCCEEEEeccc--------------ChHhHHHHHHHHhhhCCCCcEEEEcCC
Q 010109 217 GVLD-YESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNTS 263 (518)
Q Consensus 217 ~~~~-~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~sntS 263 (518)
...+ ++++++||+||.+.-. +..+-+++...+.++++++++++..|.
T Consensus 68 ~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 68 ATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred ecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 3445 4889999999987621 111225556677888777776655554
No 292
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.13 E-value=0.0017 Score=66.05 Aligned_cols=94 Identities=12% Similarity=0.038 Sum_probs=62.4
Q ss_pred ceEEEEEeCCcchHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 010109 147 VKKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (518)
.++++|||+|.||...+..+.. ...+|.+||+++++.+...+++.+ .|. .+....+. +.
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~-------~g~-----------~v~~~~~~~ea 189 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASD-------YEV-----------PVRAATDPREA 189 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------hCC-----------cEEEeCCHHHH
Confidence 3689999999999997666543 356899999999998775543321 110 12223343 56
Q ss_pred ccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC
Q 010109 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (518)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (518)
+++||+||.|+|.... +|. .+.+++++.|.+..|.
T Consensus 190 v~~aDiVitaT~s~~P----~~~--~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 190 VEGCDILVTTTPSRKP----VVK--ADWVSEGTHINAIGAD 224 (325)
T ss_pred hccCCEEEEecCCCCc----Eec--HHHcCCCCEEEecCCC
Confidence 8999999999987532 221 2346788877665554
No 293
>PLN02306 hydroxypyruvate reductase
Probab=97.12 E-value=0.0014 Score=68.10 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=72.9
Q ss_pred eEEEEEeCCcchHHHHHHHH-hCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cc
Q 010109 148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF 224 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la-~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 224 (518)
++|||||.|.+|+.+|..+. .-|.+|..||+.... .+......... ....+... .......+++ .+
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~---l~~~~~~~--------~~~~~~~~L~ell 234 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQF---LKANGEQP--------VTWKRASSMEEVL 234 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhccc---cccccccc--------ccccccCCHHHHH
Confidence 68999999999999999986 569999999987532 11100000000 00000000 0111223454 47
Q ss_pred cCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC---cchhhhhhhcc
Q 010109 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (518)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~la~~~~ 275 (518)
+.||+|+.++|-..+.+.-+=++..+.++++++|+ |+|- ++-..+.+++.
T Consensus 235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lI-N~aRG~lVDe~AL~~AL~ 287 (386)
T PLN02306 235 READVISLHPVLDKTTYHLINKERLALMKKEAVLV-NASRGPVIDEVALVEHLK 287 (386)
T ss_pred hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 89999999999887765555566777899999886 5553 34456666664
No 294
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.10 E-value=0.00029 Score=71.33 Aligned_cols=51 Identities=14% Similarity=-0.102 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHhhccccCccccccccccccccCch---hhHHHHHHHHHhh
Q 010109 464 LWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFL---SHVLSWLKELARE 516 (518)
Q Consensus 464 i~~r~~~~~~nea~~~l~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~ 516 (518)
+++|++++++|||+.++++++.+++++| .++..++||| +|||+++|.+|-+
T Consensus 186 i~nr~~~~~~~Ea~~l~~~g~~~~~~id--~~~~~~~g~~~~~~Gp~~~~D~~Gl~ 239 (311)
T PRK06130 186 IANRIQHALAREAISLLEKGVASAEDID--EVVKWSLGIRLALTGPLEQRDMNGLD 239 (311)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHHhcCCCCccCCCHHHHhhhhccc
Confidence 8999999999999999999999999999 9888999998 6999999999854
No 295
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.10 E-value=0.002 Score=58.99 Aligned_cols=77 Identities=25% Similarity=0.270 Sum_probs=56.3
Q ss_pred eEEEEEeCCcc-hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 010109 148 KKVAILGGGLM-GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~M-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (518)
++|.|||+|.| |..+|..|.+.|.+|++.+++.+.+. +.+.+
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~-------------------------------------~~l~~ 87 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK-------------------------------------EHTKQ 87 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH-------------------------------------HHHhh
Confidence 58999999987 88899999999999999998853221 23678
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchh
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~ 268 (518)
||+||.|++...-+..+ .++++.++++.+..-.++
T Consensus 88 aDiVIsat~~~~ii~~~-------~~~~~~viIDla~prdvd 122 (168)
T cd01080 88 ADIVIVAVGKPGLVKGD-------MVKPGAVVIDVGINRVPD 122 (168)
T ss_pred CCEEEEcCCCCceecHH-------HccCCeEEEEccCCCccc
Confidence 99999999764333333 245567777766554443
No 296
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.09 E-value=0.0003 Score=71.24 Aligned_cols=52 Identities=10% Similarity=-0.071 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCccccccccccccccCch---hhHHHHHHHHHhh
Q 010109 463 LLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFL---SHVLSWLKELARE 516 (518)
Q Consensus 463 ~i~~r~~~~~~nea~~~l~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~ 516 (518)
-+.+|++.++++||++|+++++.++++|| .++..+.||| +|||+++|.+|-+
T Consensus 184 fi~nri~~~~l~EAl~l~e~g~~~~e~iD--~a~~~g~G~~~~~~Gpf~~~D~~Gld 238 (314)
T PRK08269 184 YIVPRIQALAMNEAARMVEEGVASAEDID--KAIRTGFGLRFAVLGLLEFIDWGGCD 238 (314)
T ss_pred cchHHHHHHHHHHHHHHHHhCCCCHHHHH--HHHHhCCCCCccCcCHHHHHHhhhHH
Confidence 48999999999999999999999999999 8888899998 6999999999865
No 297
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.06 E-value=0.0011 Score=65.44 Aligned_cols=70 Identities=17% Similarity=0.317 Sum_probs=53.8
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 010109 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (518)
++|+|||. |.||..+|..|.++|++|++|..... ++ +.++
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~--------------------------------------~l~~~~~ 200 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR--------------------------------------NLAEVAR 200 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC--------------------------------------CHHHHHh
Confidence 68999999 99999999999999999999832111 12 2367
Q ss_pred CCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcC
Q 010109 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (518)
+||+||.|++....++.. .+++++++++.+
T Consensus 201 ~ADIVI~avg~~~~v~~~-------~ik~GavVIDvg 230 (284)
T PRK14179 201 KADILVVAIGRGHFVTKE-------FVKEGAVVIDVG 230 (284)
T ss_pred hCCEEEEecCccccCCHH-------HccCCcEEEEec
Confidence 899999999866544433 278899887654
No 298
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.05 E-value=0.0019 Score=68.09 Aligned_cols=88 Identities=22% Similarity=0.285 Sum_probs=61.8
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (518)
++|+|||.|.+|.++|..+...|.+|+++|+++.....+. ..|. . ..++ +.++.
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~-----------~~G~-------------~-~~~leell~~ 309 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAA-----------MEGY-------------Q-VVTLEDVVET 309 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHH-----------hcCc-------------e-eccHHHHHhc
Confidence 5899999999999999999999999999999987653321 1121 0 1122 34688
Q ss_pred CCEEEEecccChHhHHHHH-HHHhhhCCCCcEEEEcCCCcc
Q 010109 227 VDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTID 266 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~-~~l~~~~~~~~il~sntS~l~ 266 (518)
+|+||.+... +.++ .+..+.++++++|+ |++...
T Consensus 310 ADIVI~atGt-----~~iI~~e~~~~MKpGAiLI-NvGr~d 344 (476)
T PTZ00075 310 ADIFVTATGN-----KDIITLEHMRRMKNNAIVG-NIGHFD 344 (476)
T ss_pred CCEEEECCCc-----ccccCHHHHhccCCCcEEE-EcCCCc
Confidence 9999998632 2344 34555688999886 555444
No 299
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.03 E-value=0.0022 Score=55.59 Aligned_cols=102 Identities=20% Similarity=0.151 Sum_probs=57.3
Q ss_pred eEEEEEeC-CcchHHHHHHHHh-CCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 010109 148 KKVAILGG-GLMGSGIATALIL-SNYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~-~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (518)
+||+|+|+ |.||+.|+..+.+ .|+++ ..+|++++.... . .+. .. .|.- ...+..+++++.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g-~-d~g----~~--~~~~--------~~~~~v~~~l~~~ 64 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG-K-DVG----EL--AGIG--------PLGVPVTDDLEEL 64 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT-S-BCH----HH--CTSS--------T-SSBEBS-HHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc-c-hhh----hh--hCcC--------CcccccchhHHHh
Confidence 58999999 9999999999988 68884 466887732110 0 000 00 0000 012333455543
Q ss_pred ccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhh
Q 010109 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI 270 (518)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~l 270 (518)
+..+|+||+.. .++.-...++.. +..+..+++-|++++-.++
T Consensus 65 ~~~~DVvIDfT--~p~~~~~~~~~~---~~~g~~~ViGTTG~~~~~~ 106 (124)
T PF01113_consen 65 LEEADVVIDFT--NPDAVYDNLEYA---LKHGVPLVIGTTGFSDEQI 106 (124)
T ss_dssp TTH-SEEEEES---HHHHHHHHHHH---HHHT-EEEEE-SSSHHHHH
T ss_pred cccCCEEEEcC--ChHHhHHHHHHH---HhCCCCEEEECCCCCHHHH
Confidence 66799999987 333333334333 3346777778888876544
No 300
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.03 E-value=0.0022 Score=64.71 Aligned_cols=91 Identities=15% Similarity=0.151 Sum_probs=62.7
Q ss_pred eEEEEEeCCcchHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 010109 148 KKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (518)
++|+|||+|.||...+..+.. .+. +|.+|++++++.++..+++.. .+ + .+. ..+. +.+
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~~-~----------~~~-~~~~~~av 186 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------LG-P----------TAE-PLDGEAIP 186 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------cC-C----------eeE-ECCHHHHh
Confidence 589999999999999999865 464 799999999988775543321 11 0 011 2333 467
Q ss_pred cCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC
Q 010109 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (518)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (518)
.++|+||.|.|.... +|.. .+++++.|....|.
T Consensus 187 ~~aDiVitaT~s~~P----l~~~---~~~~g~hi~~iGs~ 219 (304)
T PRK07340 187 EAVDLVVTATTSRTP----VYPE---AARAGRLVVAVGAF 219 (304)
T ss_pred hcCCEEEEccCCCCc----eeCc---cCCCCCEEEecCCC
Confidence 899999999987643 3432 35788877665554
No 301
>PRK04148 hypothetical protein; Provisional
Probab=97.01 E-value=0.0037 Score=54.57 Aligned_cols=94 Identities=24% Similarity=0.256 Sum_probs=65.6
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (518)
+||.+||+| -|..+|..|++.|++|+..|.++++++.+.+. +. ....+.+ +..+.+.-+++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----------~~------~~v~dDl-f~p~~~~y~~a 78 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----------GL------NAFVDDL-FNPNLEIYKNA 78 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------CC------eEEECcC-CCCCHHHHhcC
Confidence 589999999 89999999999999999999999987765431 10 0011111 23345567899
Q ss_pred CEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcC
Q 010109 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (518)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (518)
|+|...=|.. ++ +.-+-+|.+.+..+.+|..-+
T Consensus 79 ~liysirpp~-el-~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 79 KLIYSIRPPR-DL-QPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred CEEEEeCCCH-HH-HHHHHHHHHHcCCCEEEEcCC
Confidence 9999887643 33 444566777777777775433
No 302
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.00 E-value=0.00051 Score=74.21 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=40.1
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHR 43 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~ 43 (518)
|+++|++|+|+||++|||||+|||++++.+++.++|++++..+
T Consensus 188 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~ 230 (546)
T TIGR03222 188 FCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQS 230 (546)
T ss_pred HHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCC
Confidence 4689999999999999999999999999999999999998863
No 303
>PRK05086 malate dehydrogenase; Provisional
Probab=97.00 E-value=0.0025 Score=64.42 Aligned_cols=95 Identities=20% Similarity=0.291 Sum_probs=57.4
Q ss_pred eEEEEEeC-CcchHHHHHHHHh---CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc--ccC-
Q 010109 148 KKVAILGG-GLMGSGIATALIL---SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG--VLD- 220 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~---~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~- 220 (518)
+||+|||+ |.+|+.++..+.. .+++++++|+++.. .+.. ++ .... .....+.. .++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~--~g~a-----lD--l~~~--------~~~~~i~~~~~~d~ 63 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT--PGVA-----VD--LSHI--------PTAVKIKGFSGEDP 63 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC--ccee-----hh--hhcC--------CCCceEEEeCCCCH
Confidence 59999999 9999999998855 24689999998542 1100 00 0000 00012222 335
Q ss_pred cccccCCCEEEEeccc--------------ChHhHHHHHHHHhhhCCCCcEEEE
Q 010109 221 YESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILAS 260 (518)
Q Consensus 221 ~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~s 260 (518)
++++++||+||.|.-. +..+-+++...+.++ .++++++.
T Consensus 64 ~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~iviv 116 (312)
T PRK05086 64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGI 116 (312)
T ss_pred HHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEE
Confidence 5889999999998832 111344555667766 45555543
No 304
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.99 E-value=0.0012 Score=62.04 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=35.7
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010109 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (518)
++|.|+|+ |.+|..++..|+..|++|++++|+.++++...
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~ 69 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAA 69 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 58999996 99999999999999999999999988776544
No 305
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.96 E-value=0.0015 Score=64.96 Aligned_cols=72 Identities=21% Similarity=0.214 Sum_probs=51.7
Q ss_pred eEEEEEeCCcchHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-ccccc
Q 010109 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFK 225 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~ 225 (518)
++|.|+|+|.+|.+++..|+..| .+|++++|+.++++...+.+.. .+ .+....+ .+.+.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~-------~~------------~~~~~~~~~~~~~ 184 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA-------LG------------KAELDLELQEELA 184 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-------cc------------ceeecccchhccc
Confidence 58999999999999999999999 6999999999887664432210 00 0111011 24567
Q ss_pred CCCEEEEecccCh
Q 010109 226 DVDMVIEAIIENV 238 (518)
Q Consensus 226 ~aDlVIeav~e~~ 238 (518)
++|+||.|+|..+
T Consensus 185 ~~DivInaTp~g~ 197 (278)
T PRK00258 185 DFDLIINATSAGM 197 (278)
T ss_pred cCCEEEECCcCCC
Confidence 8999999998664
No 306
>PLN02494 adenosylhomocysteinase
Probab=96.95 E-value=0.0055 Score=64.55 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=65.4
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (518)
++|+|+|.|.+|.++|+.+...|.+|+++|+++.....+. ..|. . .. ++ +.++.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~-----------~~G~-~------------vv-~leEal~~ 309 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQAL-----------MEGY-Q------------VL-TLEDVVSE 309 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHH-----------hcCC-e------------ec-cHHHHHhh
Confidence 6899999999999999999989999999999987643322 1121 0 00 12 34678
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCC---Ccchhhhhhh
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIGER 273 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS---~l~i~~la~~ 273 (518)
+|+||++.... .-+..+....++++++|+..+. .+....+.+.
T Consensus 310 ADVVI~tTGt~----~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 310 ADIFVTTTGNK----DIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred CCEEEECCCCc----cchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence 99999876432 2233555567899998875544 2344455443
No 307
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.94 E-value=0.004 Score=53.70 Aligned_cols=100 Identities=21% Similarity=0.191 Sum_probs=59.6
Q ss_pred EEEEEeC-CcchHHHHHHHHhC-CCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc--
Q 010109 149 KVAILGG-GLMGSGIATALILS-NYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-- 223 (518)
Q Consensus 149 kV~VIGa-G~MG~~iA~~la~~-G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 223 (518)
||+|||+ |.+|..++..+... ++++..+ +++.+..+... . ..+.+.. .+....+.+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~----~------~~~~~~~--------~~~~~~~~~~~~ 62 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVS----E------AGPHLKG--------EVVLELEPEDFE 62 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHH----H------HCccccc--------ccccccccCChh
Confidence 6899995 99999999988884 8887766 55432211111 0 0111100 0000011122
Q ss_pred ccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchh
Q 010109 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (518)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~ 268 (518)
..++|+||.|+|.+... ++...+...+.+++++++.+|++...
T Consensus 63 ~~~~DvV~~~~~~~~~~--~~~~~~~~~~~~g~~viD~s~~~~~~ 105 (122)
T smart00859 63 ELAVDIVFLALPHGVSK--EIAPLLPKAAEAGVKVIDLSSAFRMD 105 (122)
T ss_pred hcCCCEEEEcCCcHHHH--HHHHHHHhhhcCCCEEEECCccccCC
Confidence 24899999999987543 33333445567899999988887643
No 308
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=96.93 E-value=0.00059 Score=73.89 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=40.1
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhhcC
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHR 43 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~ 43 (518)
|+++|++++|+||+++||||+|||++++.+.+.++|++++..+
T Consensus 192 llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~ 234 (550)
T PRK08184 192 FCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAAS 234 (550)
T ss_pred HHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCC
Confidence 4689999999999999999999999999999999999998863
No 309
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=96.92 E-value=0.015 Score=57.09 Aligned_cols=180 Identities=21% Similarity=0.181 Sum_probs=103.8
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (518)
-++|+|||.|.-|.+=|..|..+|.+|++--+.... .+++ .+.|- ..-+-.++++
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA-----------~~dGf-------------~V~~v~ea~k 73 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKA-----------KEDGF-------------KVYTVEEAAK 73 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHH-----------HhcCC-------------EeecHHHHhh
Confidence 369999999999999999999999999887665443 2222 23331 1122235689
Q ss_pred CCCEEEEecccChHhHHHHHH-HHhhhCCCCcEEEEcCCCcchhhhhhhccCcCc--eeecccccccC----------CC
Q 010109 226 DVDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTSTIDLNLIGERTYSKDR--IVGAHFFSPAH----------VM 292 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r--~ig~hf~~P~~----------~~ 292 (518)
.+|+|+..+|+. +-.++++ +|.+.+..+..|.- +.++.|..= ....|.. ++=+-|-.|-+ ..
T Consensus 74 ~ADvim~L~PDe--~q~~vy~~~I~p~Lk~G~aL~F-aHGfNihf~--~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~Gv 148 (338)
T COG0059 74 RADVVMILLPDE--QQKEVYEKEIAPNLKEGAALGF-AHGFNIHFG--LIVPPKDVDVIMVAPKGPGHLVRREYKEGFGV 148 (338)
T ss_pred cCCEEEEeCchh--hHHHHHHHHhhhhhcCCceEEe-ccccceecc--eecCCccCcEEEEcCCCCcHHHHHHHHccCCc
Confidence 999999999975 4467887 89999999987653 334444321 1111221 11111212211 11
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCcEE---Ee--C-Cc-ccchhhh-----hHHHHHHHHH-HHHHcCCCHHH
Q 010109 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPI---VV--G-NC-TGFAVNR-----MFFPYTQAAF-LLVERGTDLYL 356 (518)
Q Consensus 293 ~lveiv~g~~t~~e~~~~~~~l~~~lGk~~v---~v--~-d~-~Gfi~nr-----il~~~~~Ea~-~l~~~G~~~~~ 356 (518)
|.+.-|. ...+-...+.+..+.+.+|.+.. .. . ++ ...+..+ .+..++..++ .|++.|.+|+-
T Consensus 149 P~LiAV~-qD~sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~~li~agfetLvEaGy~PE~ 224 (338)
T COG0059 149 PALIAVH-QDASGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPEL 224 (338)
T ss_pred eeEEEEE-eCCCchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHHHHHHHHHHHHHHHcCCCHHH
Confidence 3222232 22345578888899999884322 11 1 11 1223322 2334455555 35678887764
No 310
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.91 E-value=0.0048 Score=60.09 Aligned_cols=64 Identities=20% Similarity=0.254 Sum_probs=44.5
Q ss_pred eEEEEEeCCcchHHHHHHHHhCC---Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 010109 148 KKVAILGGGLMGSGIATALILSN---YP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G---~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (518)
+||+|||+|.||..++..+.+.+ ++ +.+++++++..+.... .....+++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-------------------------~~~~~~~l~~ 57 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-------------------------RVALLDGLPG 57 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-------------------------cCcccCCHHH
Confidence 69999999999999999986543 44 4467888765544210 1223445665
Q ss_pred c--cCCCEEEEeccc
Q 010109 224 F--KDVDMVIEAIIE 236 (518)
Q Consensus 224 ~--~~aDlVIeav~e 236 (518)
+ ..+|+||||...
T Consensus 58 ll~~~~DlVVE~A~~ 72 (267)
T PRK13301 58 LLAWRPDLVVEAAGQ 72 (267)
T ss_pred HhhcCCCEEEECCCH
Confidence 3 789999999964
No 311
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.90 E-value=0.0036 Score=63.79 Aligned_cols=93 Identities=13% Similarity=0.145 Sum_probs=63.2
Q ss_pred eEEEEEeCCcchHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 010109 148 KKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (518)
++|+|||+|.+|...+..++. .+. +|.+|++++++.++..+++...+ + + .+....++ +.+
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~-~----------~~~~~~~~~~~~ 190 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------N-T----------EIYVVNSADEAI 190 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------C-C----------cEEEeCCHHHHH
Confidence 589999999999998877653 454 89999999998876554432111 1 0 11223344 357
Q ss_pred cCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC
Q 010109 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (518)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (518)
.++|+||.|.|... .++. ..+++++.|.+..|.
T Consensus 191 ~~aDiVi~aT~s~~----p~i~---~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 191 EEADIIVTVTNAKT----PVFS---EKLKKGVHINAVGSF 223 (325)
T ss_pred hcCCEEEEccCCCC----cchH---HhcCCCcEEEecCCC
Confidence 89999999998663 3343 356888877666554
No 312
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.88 E-value=0.0061 Score=57.26 Aligned_cols=92 Identities=21% Similarity=0.277 Sum_probs=58.7
Q ss_pred eEEEEEeCCcchHHHHHHHHhC--CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 010109 148 KKVAILGGGLMGSGIATALILS--NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~--G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (518)
++|++||+|.+|..+...+... .+ .|.+||++.+++...... .+ ....+++++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~----------~~-------------~~~~s~ide~ 57 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEAS----------VG-------------RRCVSDIDEL 57 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhh----------cC-------------CCccccHHHH
Confidence 4899999999999999876543 24 588999999987654321 01 112245554
Q ss_pred ccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcc
Q 010109 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266 (518)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~ 266 (518)
+.+.|+|+||...+ ++ ++..-++.+ ..-+.|++| ++.+.
T Consensus 58 ~~~~DlvVEaAS~~-Av-~e~~~~~L~-~g~d~iV~S-VGALa 96 (255)
T COG1712 58 IAEVDLVVEAASPE-AV-REYVPKILK-AGIDVIVMS-VGALA 96 (255)
T ss_pred hhccceeeeeCCHH-HH-HHHhHHHHh-cCCCEEEEe-chhcc
Confidence 48999999999533 23 333333322 134677776 44555
No 313
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.88 E-value=0.0031 Score=66.45 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=34.5
Q ss_pred eEEEEEeCCcchHHHHHHHHhCC-CcEEEEeCCHHHHHH
Q 010109 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEA 185 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G-~~V~l~d~~~~~~~~ 185 (518)
++|+|||+|.||..++..|...| .+|++++++.+.++.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~ 219 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAED 219 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 58999999999999999999999 689999999887654
No 314
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.85 E-value=0.0037 Score=66.07 Aligned_cols=38 Identities=26% Similarity=0.326 Sum_probs=34.7
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCHHHHHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEA 185 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~~~~~~ 185 (518)
++|+|||+|.||..++..+...|. +|++++++++.++.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~ 221 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEE 221 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHH
Confidence 689999999999999999999997 79999999987654
No 315
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.78 E-value=0.0031 Score=67.58 Aligned_cols=70 Identities=21% Similarity=0.318 Sum_probs=51.2
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (518)
++++|+|+|.||.+++..|+..|++|+++++++++++...+.+ .....+ ..+...+.++
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~--------~~~~~~-------------~~~~~~l~~~ 391 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRC--------QGKAFP-------------LESLPELHRI 391 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------ccceec-------------hhHhcccCCC
Confidence 5899999999999999999999999999999988766533211 000010 1122336789
Q ss_pred CEEEEecccCh
Q 010109 228 DMVIEAIIENV 238 (518)
Q Consensus 228 DlVIeav~e~~ 238 (518)
|+||.|+|...
T Consensus 392 DiVInatP~g~ 402 (477)
T PRK09310 392 DIIINCLPPSV 402 (477)
T ss_pred CEEEEcCCCCC
Confidence 99999998765
No 316
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.76 E-value=0.0044 Score=64.25 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=35.9
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (518)
-.+|.|||+|.+|...+..+...|.+|+++|+++++++..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l 206 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQL 206 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence 3579999999999999999999999999999999876653
No 317
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.76 E-value=0.064 Score=54.36 Aligned_cols=40 Identities=28% Similarity=0.198 Sum_probs=33.4
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (518)
++|+|+|+|-+|.--.+.....|.+|+.+|+++++++.++
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~ 207 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAK 207 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHH
Confidence 5899999997776666666668999999999999988754
No 318
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.74 E-value=0.0053 Score=62.56 Aligned_cols=92 Identities=17% Similarity=0.211 Sum_probs=59.9
Q ss_pred eEEEEEeCCcchHHHHHHHH-hCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 010109 148 KKVAILGGGLMGSGIATALI-LSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la-~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (518)
++++|||+|.+|...+..++ ..++ +|++|++++++.+...+++...+ | + .+....+. +.+
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g-~----------~v~~~~~~~~av 192 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------G-I----------DVTAATDPRAAM 192 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------C-c----------eEEEeCCHHHHh
Confidence 58999999999999999887 3665 69999999998877554432111 1 0 12223344 347
Q ss_pred cCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcC
Q 010109 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (518)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (518)
.+||+||.|+|.... ++. .+.+++++.+....
T Consensus 193 ~~aDiVvtaT~s~~p----~i~--~~~l~~g~~i~~vg 224 (326)
T TIGR02992 193 SGADIIVTTTPSETP----ILH--AEWLEPGQHVTAMG 224 (326)
T ss_pred ccCCEEEEecCCCCc----Eec--HHHcCCCcEEEeeC
Confidence 899999999976532 221 12356666554333
No 319
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.73 E-value=0.0024 Score=55.09 Aligned_cols=100 Identities=20% Similarity=0.194 Sum_probs=59.5
Q ss_pred EEEEEe-CCcchHHHHHHHHhC-CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc-Ccccc
Q 010109 149 KVAILG-GGLMGSGIATALILS-NYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL-DYESF 224 (518)
Q Consensus 149 kV~VIG-aG~MG~~iA~~la~~-G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~ 224 (518)
||+||| .|.+|+.+...|+++ .++ +.++.++.+.-.... .... .. .....+.... +.+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~--------~~~~--~~------~~~~~~~~~~~~~~~~ 64 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLS--------EVFP--HP------KGFEDLSVEDADPEEL 64 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHH--------HTTG--GG------TTTEEEBEEETSGHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeee--------hhcc--cc------ccccceeEeecchhHh
Confidence 799999 799999999999885 234 445566552211100 0000 00 0011222222 44568
Q ss_pred cCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhh
Q 010109 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL 269 (518)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ 269 (518)
.++|+||.|+|.. ..+++..++ +..++.++++++.+....
T Consensus 65 ~~~Dvvf~a~~~~--~~~~~~~~~---~~~g~~ViD~s~~~R~~~ 104 (121)
T PF01118_consen 65 SDVDVVFLALPHG--ASKELAPKL---LKAGIKVIDLSGDFRLDD 104 (121)
T ss_dssp TTESEEEE-SCHH--HHHHHHHHH---HHTTSEEEESSSTTTTST
T ss_pred hcCCEEEecCchh--HHHHHHHHH---hhCCcEEEeCCHHHhCCC
Confidence 9999999999865 345555554 456788889998775543
No 320
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=96.72 E-value=0.0056 Score=61.64 Aligned_cols=104 Identities=17% Similarity=0.076 Sum_probs=71.1
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (518)
=++|+|+|+|.+|..||+.|-..|..+.-+.+++...+...+ .+. . ..+..+.+.+
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~-----------~~~-----------~--~~d~~~~~~~ 217 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYE-----------YYA-----------E--FVDIEELLAN 217 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHH-----------hcc-----------c--ccCHHHHHhh
Confidence 379999999999999999999999344444554443332211 110 0 1222355789
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCc--chhhhhhhc
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERT 274 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l--~i~~la~~~ 274 (518)
+|+||.|.|-+.+...-+=+++...++++++|+...=+- .-.++.+++
T Consensus 218 sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL 267 (336)
T KOG0069|consen 218 SDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEAL 267 (336)
T ss_pred CCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHH
Confidence 999999999998877666678889999999887544343 334555555
No 321
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.70 E-value=0.0033 Score=57.27 Aligned_cols=38 Identities=32% Similarity=0.311 Sum_probs=35.5
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 010109 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (518)
|||+|||+ |..|+-|+.-..+.||+|+.+-||++++..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~ 39 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA 39 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc
Confidence 69999999 999999999999999999999999998754
No 322
>PLN00203 glutamyl-tRNA reductase
Probab=96.69 E-value=0.0025 Score=68.58 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=35.9
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 010109 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG 186 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~~~~~~~ 186 (518)
-++|+|||+|.||..++..|...|+ +|++++++.+.++..
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~L 306 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAAL 306 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHH
Confidence 3689999999999999999999997 799999999887664
No 323
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.64 E-value=0.0051 Score=61.35 Aligned_cols=40 Identities=15% Similarity=0.098 Sum_probs=35.8
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (518)
++|.|||+|-+|++++..|+..|. +|++++|+.++.+...
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La 166 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLV 166 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 479999999999999999999997 6999999998876644
No 324
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=96.55 E-value=0.0059 Score=62.09 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=34.5
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchH------------HHHHHHHHHhhhhc
Q 010109 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQL------------VSTARQWALDILEH 42 (518)
Q Consensus 1 liltG~~i~A~eA~~~GLVd~vv~~~~l------------~~~A~~~a~~l~~~ 42 (518)
|+++|++++|++|+++||||+|||++++ .+.+.++++.+...
T Consensus 188 llltGe~~sA~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 241 (360)
T TIGR03200 188 SGTLCEPWSAHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGE 241 (360)
T ss_pred HHHhCCcCcHHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCC
Confidence 4689999999999999999999998887 66666666655543
No 325
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.54 E-value=0.019 Score=54.83 Aligned_cols=129 Identities=21% Similarity=0.234 Sum_probs=77.7
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (518)
++|.|||+|.++..=+..|++.|.+|+++..+ ++ +.. +.+.|.++ .+.-.-..+++.
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~e-l~~-----------l~~~~~i~---------~~~r~~~~~dl~ 84 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKE-FLD-----------LKKYGNLK---------LIKGNYDKEFIK 84 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHH-HHH-----------HHhCCCEE---------EEeCCCChHHhC
Confidence 48999999999999899999999999999554 33 221 12233322 111111234688
Q ss_pred CCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeeccccccc--CCCCeEEEEeCCCC
Q 010109 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQT 303 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~--~~~~lveiv~g~~t 303 (518)
++++||-|+ +|.++-+.+.+ .+....+++.+... |.. ..|+.|+ ...+++.-|.+.+.
T Consensus 85 g~~LViaAT-dD~~vN~~I~~----~a~~~~~lvn~vd~------------p~~---~dFi~PAiv~rg~l~IaIST~G~ 144 (223)
T PRK05562 85 DKHLIVIAT-DDEKLNNKIRK----HCDRLYKLYIDCSD------------YKK---GLCIIPYQRSTKNFVFALNTKGG 144 (223)
T ss_pred CCcEEEECC-CCHHHHHHHHH----HHHHcCCeEEEcCC------------ccc---CeEEeeeEEecCCEEEEEECCCc
Confidence 999999987 45555555444 44443344333321 111 2355664 34566666777777
Q ss_pred cHHHHHHHHHHHHh
Q 010109 304 SPQVIVDLLDIGKK 317 (518)
Q Consensus 304 ~~e~~~~~~~l~~~ 317 (518)
+|.....+++-++.
T Consensus 145 sP~lar~lR~~ie~ 158 (223)
T PRK05562 145 SPKTSVFIGEKVKN 158 (223)
T ss_pred CcHHHHHHHHHHHH
Confidence 88776666665554
No 326
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.54 E-value=0.0088 Score=61.08 Aligned_cols=73 Identities=23% Similarity=0.256 Sum_probs=51.4
Q ss_pred eEEEEEeCCcchHHHHHHHHh-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 010109 148 KKVAILGGGLMGSGIATALIL-SN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~-~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (518)
++|+|||+|.+|...+..+.. .+ .+|.+|++++++++...+++.+.+ | + .+....+. +.+
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-~----------~v~~~~d~~~al 195 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-I----------PVTVARDVHEAV 195 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-c----------eEEEeCCHHHHH
Confidence 589999999999999888875 45 489999999998887554332111 1 0 12223444 447
Q ss_pred cCCCEEEEecccC
Q 010109 225 KDVDMVIEAIIEN 237 (518)
Q Consensus 225 ~~aDlVIeav~e~ 237 (518)
.++|+||.|.|..
T Consensus 196 ~~aDiVi~aT~s~ 208 (330)
T PRK08291 196 AGADIIVTTTPSE 208 (330)
T ss_pred ccCCEEEEeeCCC
Confidence 8899999988764
No 327
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.54 E-value=0.011 Score=66.26 Aligned_cols=102 Identities=10% Similarity=0.072 Sum_probs=77.8
Q ss_pred EEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcc-h-hhhhhhccC-cCceeecccccccC------------CCCe
Q 010109 230 VIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-L-NLIGERTYS-KDRIVGAHFFSPAH------------VMPL 294 (518)
Q Consensus 230 VIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~-i-~~la~~~~~-~~r~ig~hf~~P~~------------~~~l 294 (518)
||.|+|.. .-.+++.++.+.++++++|++.+|+.. + ..+.+.+.. +.+|||.||+...+ ....
T Consensus 1 vila~Pv~--~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAPVA--QTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcCHH--HHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence 68899855 446889999999999999999999863 3 444444432 35799999997543 2356
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCcEEEeC-Ccccchh
Q 010109 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAV 333 (518)
Q Consensus 295 veiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~-d~~Gfi~ 333 (518)
+.+++.+.++++.++.+.++++.+|..++.+. +.+..++
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~ 118 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVF 118 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHH
Confidence 77888889999999999999999999988886 3444443
No 328
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.51 E-value=0.0063 Score=62.20 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=31.0
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCH
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~ 180 (518)
++|.|||+|.+|+.+|..|+.+|+ +++++|.+.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 589999999999999999999998 899999985
No 329
>PRK06046 alanine dehydrogenase; Validated
Probab=96.45 E-value=0.011 Score=60.37 Aligned_cols=94 Identities=16% Similarity=0.159 Sum_probs=60.2
Q ss_pred ceEEEEEeCCcchHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 010109 147 VKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (518)
.++|+|||+|.||...+..+... +. .|.+||+++++.++..+++.+.+ + -.+....+.++
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~------~-----------~~v~~~~~~~~~ 191 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVV------G-----------CDVTVAEDIEEA 191 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhc------C-----------ceEEEeCCHHHH
Confidence 35899999999999999888743 44 78899999998887654432110 1 01222334443
Q ss_pred ccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC
Q 010109 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (518)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (518)
++ +|+|+.|.|.... +|. .+.+++++.|.+..|.
T Consensus 192 l~-aDiVv~aTps~~P----~~~--~~~l~~g~hV~~iGs~ 225 (326)
T PRK06046 192 CD-CDILVTTTPSRKP----VVK--AEWIKEGTHINAIGAD 225 (326)
T ss_pred hh-CCEEEEecCCCCc----Eec--HHHcCCCCEEEecCCC
Confidence 44 9999999986532 222 1245677766555543
No 330
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.45 E-value=0.0088 Score=58.90 Aligned_cols=99 Identities=19% Similarity=0.207 Sum_probs=53.2
Q ss_pred eEEEEEeCCcchHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc-C---c
Q 010109 148 KKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL-D---Y 221 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~---~ 221 (518)
+||++||.|.+--..-...... |..|..+|+++++.+.+.+-+...+. .. .++++.+ | .
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~------------L~---~~m~f~~~d~~~~ 186 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG------------LS---KRMSFITADVLDV 186 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H------------H----SSEEEEES-GGGG
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc------------cc---CCeEEEecchhcc
Confidence 5999999999966544333333 45788999999998876543331110 11 1222211 2 1
Q ss_pred -ccccCCCEEEEeccc--ChHhHHHHHHHHhhhCCCCcEEEEc
Q 010109 222 -ESFKDVDMVIEAIIE--NVSLKQQIFADLEKYCPPHCILASN 261 (518)
Q Consensus 222 -~~~~~aDlVIeav~e--~~~~k~~v~~~l~~~~~~~~il~sn 261 (518)
.++.++|+|+.|.-. +.+-|.+++..|.++++++++|+.-
T Consensus 187 ~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 187 TYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred ccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 357899999998743 3346899999999999999988765
No 331
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.44 E-value=0.0043 Score=61.27 Aligned_cols=69 Identities=19% Similarity=0.229 Sum_probs=42.5
Q ss_pred ceEEEEEeCCcchHHHHHHHHhC-CCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 010109 147 VKKVAILGGGLMGSGIATALILS-NYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~-G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (518)
|+||+|||+|.||..++..+.+. +.++..+ +++.. .+...+ .... .+...++++++
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~--------~~~~-------------~~~~~~d~~~l 58 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRR--------ALGE-------------AVRVVSSVDAL 58 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhh--------hhcc-------------CCeeeCCHHHh
Confidence 36999999999999999998875 5665433 33221 111100 0000 12234555554
Q ss_pred -cCCCEEEEecccC
Q 010109 225 -KDVDMVIEAIIEN 237 (518)
Q Consensus 225 -~~aDlVIeav~e~ 237 (518)
.+.|+||||.+..
T Consensus 59 ~~~~DvVve~t~~~ 72 (265)
T PRK13303 59 PQRPDLVVECAGHA 72 (265)
T ss_pred ccCCCEEEECCCHH
Confidence 5689999999865
No 332
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.43 E-value=0.0053 Score=58.05 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=30.3
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCC
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~ 179 (518)
.||.|||+|.+|+.+|..|+..|. +++++|.+
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 589999999999999999999998 89999987
No 333
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.42 E-value=0.0073 Score=59.38 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=44.3
Q ss_pred eEEEEEeC-CcchHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 010109 148 KKVAILGG-GLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (518)
+||+|+|+ |.||..++..+.+. +++++ ++|++++..... ... .+...++++.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~------------~~~------------~i~~~~dl~~l 57 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ------------GAL------------GVAITDDLEAV 57 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc------------CCC------------CccccCCHHHh
Confidence 59999998 99999999888764 67765 578887654321 000 1122345543
Q ss_pred ccCCCEEEEecccC
Q 010109 224 FKDVDMVIEAIIEN 237 (518)
Q Consensus 224 ~~~aDlVIeav~e~ 237 (518)
+.++|+||++.+.+
T Consensus 58 l~~~DvVid~t~p~ 71 (257)
T PRK00048 58 LADADVLIDFTTPE 71 (257)
T ss_pred ccCCCEEEECCCHH
Confidence 45799999888654
No 334
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.38 E-value=0.0085 Score=59.39 Aligned_cols=75 Identities=20% Similarity=0.210 Sum_probs=52.3
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (518)
++|.|+|+|-++++++..|++.|. ++++++|+.+++++..+.+.+... .+. .....+.+...+
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~------~~~----------~~~~~~~~~~~~ 190 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGA------AVE----------AAALADLEGLEE 190 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccc------ccc----------cccccccccccc
Confidence 689999999999999999999995 799999999998775543221110 000 001112233336
Q ss_pred CCEEEEecccCh
Q 010109 227 VDMVIEAIIENV 238 (518)
Q Consensus 227 aDlVIeav~e~~ 238 (518)
+|+||.|+|-.+
T Consensus 191 ~dliINaTp~Gm 202 (283)
T COG0169 191 ADLLINATPVGM 202 (283)
T ss_pred cCEEEECCCCCC
Confidence 899999998765
No 335
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=96.34 E-value=0.061 Score=52.98 Aligned_cols=202 Identities=17% Similarity=0.214 Sum_probs=110.9
Q ss_pred ceEEEEEeCCcchHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHH----HHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 010109 147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGR----VRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~----i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (518)
|.||.-||+|..|+.-...++.. .++|+++|.+..++..-... .+..++..++. ..-.++-+++|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~---------crgknlffstd 71 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQ---------CRGKNLFFSTD 71 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHH---------hcCCceeeecc
Confidence 46999999999999887776654 46899999999887642211 11222222221 11135667788
Q ss_pred cc-cccCCCEEEEecc-------------cChHhHHHHHHHHhhhCCCCcEEEEcCCCcchh---hhhhhccCcCceeec
Q 010109 221 YE-SFKDVDMVIEAII-------------ENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGA 283 (518)
Q Consensus 221 ~~-~~~~aDlVIeav~-------------e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~---~la~~~~~~~r~ig~ 283 (518)
.+ .++.+|+|+.+|- .|+..-.+.-+.|.+....+.|++ --|+.++. .|...+.+. --|+
T Consensus 72 iekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~aaesi~~il~~n--~~~i 148 (481)
T KOG2666|consen 72 IEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVKAAESIEKILNHN--SKGI 148 (481)
T ss_pred hHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccchHHHHHHHHHhcC--CCCc
Confidence 75 5899999999882 233334455556777767777765 56777764 333334322 2355
Q ss_pred ccc---cccC----------CCCeEEEEeCCCCcHHHHHHHHHH---HHhc-CCcEEEeCC-----cccchhhhhHHHH-
Q 010109 284 HFF---SPAH----------VMPLLEIVRTNQTSPQVIVDLLDI---GKKI-KKTPIVVGN-----CTGFAVNRMFFPY- 340 (518)
Q Consensus 284 hf~---~P~~----------~~~lveiv~g~~t~~e~~~~~~~l---~~~l-Gk~~v~v~d-----~~Gfi~nril~~~- 340 (518)
||- ||-- ..|--.++.|..| ++-.+.++.+ .+.+ -+.-+.... -....+|..++.-
T Consensus 149 ~fqilsnpeflaegtaikdl~npdrvligg~et-peg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqri 227 (481)
T KOG2666|consen 149 KFQILSNPEFLAEGTAIKDLFNPDRVLIGGRET-PEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRI 227 (481)
T ss_pred eeEeccChHHhcccchhhhhcCCceEEECCCCC-hhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHH
Confidence 552 3321 0122235666554 4444444444 3332 122222221 1223444444322
Q ss_pred --HHHHHHHH-HcCCCHHHHHHHH
Q 010109 341 --TQAAFLLV-ERGTDLYLIDRAI 361 (518)
Q Consensus 341 --~~Ea~~l~-~~G~~~~~ID~a~ 361 (518)
+|....+- .-|.+..++-.+.
T Consensus 228 ssins~salceatgadv~eva~av 251 (481)
T KOG2666|consen 228 SSINSMSALCEATGADVSEVAYAV 251 (481)
T ss_pred hhhHHHHHHHHhcCCCHHHHHHHh
Confidence 33333333 3578888887764
No 336
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.31 E-value=0.017 Score=46.47 Aligned_cols=31 Identities=39% Similarity=0.544 Sum_probs=28.5
Q ss_pred eEEEEEeCCcchHHHHHHHHhC-CCcEEEEeC
Q 010109 148 KKVAILGGGLMGSGIATALILS-NYPVILKEV 178 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~-G~~V~l~d~ 178 (518)
++++|+|+|.||.+++..+... +.+|++||+
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 5899999999999999999998 678999987
No 337
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.28 E-value=0.042 Score=63.67 Aligned_cols=77 Identities=22% Similarity=0.242 Sum_probs=52.2
Q ss_pred cccceEEEEEeCCcchHHHHHHHHhC-CCc-------------EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 010109 144 PRRVKKVAILGGGLMGSGIATALILS-NYP-------------VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFE 209 (518)
Q Consensus 144 ~~~~~kV~VIGaG~MG~~iA~~la~~-G~~-------------V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~ 209 (518)
...++||+|||+|.||+.+|..|++. +++ |++.|++++.+++..+.. .+ ++
T Consensus 566 ~~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~---------~~-~~----- 630 (1042)
T PLN02819 566 TKKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI---------EN-AE----- 630 (1042)
T ss_pred cccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc---------CC-Cc-----
Confidence 34578999999999999999999875 334 999999998776543211 01 00
Q ss_pred hhhccccc-ccCcc----cccCCCEEEEecccChH
Q 010109 210 KTISLLTG-VLDYE----SFKDVDMVIEAIIENVS 239 (518)
Q Consensus 210 ~~~~~i~~-~~~~~----~~~~aDlVIeav~e~~~ 239 (518)
.+.. ..|.+ .++++|+||.|+|....
T Consensus 631 ----~v~lDv~D~e~L~~~v~~~DaVIsalP~~~H 661 (1042)
T PLN02819 631 ----AVQLDVSDSESLLKYVSQVDVVISLLPASCH 661 (1042)
T ss_pred ----eEEeecCCHHHHHHhhcCCCEEEECCCchhh
Confidence 0111 22322 24679999999998654
No 338
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.20 E-value=0.047 Score=49.39 Aligned_cols=127 Identities=15% Similarity=0.140 Sum_probs=72.5
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (518)
++|.|||+|.+|...+..|...|++|++++.+ ..+...+ .+.+. ...-.-..+++.++
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~-----------l~~i~---------~~~~~~~~~dl~~a 71 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKE-----------LPYIT---------WKQKTFSNDDIKDA 71 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHh-----------ccCcE---------EEecccChhcCCCc
Confidence 68999999999999999999999999999643 2222110 01110 00001112458899
Q ss_pred CEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeeccccccc--CCCCeEEEEeCCCCcH
Q 010109 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTSP 305 (518)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~--~~~~lveiv~g~~t~~ 305 (518)
|+||-|+ ++.++...+.. .. .... ++.+.. .|+. ..|+.|+ ...+++--|.+.+.+|
T Consensus 72 ~lViaaT-~d~e~N~~i~~-~a---~~~~-~vn~~d------------~~~~---~~f~~pa~v~~~~l~iaisT~G~sP 130 (157)
T PRK06719 72 HLIYAAT-NQHAVNMMVKQ-AA---HDFQ-WVNVVS------------DGTE---SSFHTPGVIRNDEYVVTISTSGKDP 130 (157)
T ss_pred eEEEECC-CCHHHHHHHHH-HH---HHCC-cEEECC------------CCCc---CcEEeeeEEEECCeEEEEECCCcCh
Confidence 9999886 44454433332 22 2222 222221 1221 2355564 3345555566667788
Q ss_pred HHHHHHHHHHHh
Q 010109 306 QVIVDLLDIGKK 317 (518)
Q Consensus 306 e~~~~~~~l~~~ 317 (518)
.....+++-++.
T Consensus 131 ~la~~lr~~ie~ 142 (157)
T PRK06719 131 SFTKRLKQELTS 142 (157)
T ss_pred HHHHHHHHHHHH
Confidence 777766665544
No 339
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.19 E-value=0.0088 Score=62.79 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=34.9
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG 186 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~~~~~~~ 186 (518)
+||.|||+|-||..++..|+..|. ++++++|+.++.+..
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~L 221 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKI 221 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 589999999999999999999996 799999998876553
No 340
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.16 E-value=0.015 Score=58.86 Aligned_cols=94 Identities=16% Similarity=0.174 Sum_probs=63.0
Q ss_pred ceEEEEEeCCcchHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 010109 147 VKKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (518)
.+.++|||+|.++......+..- + -+|.+|++++++.++...++.+.+ . ..+....+. ++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~-------~----------~~v~a~~s~~~a 192 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRG-------G----------EAVGAADSAEEA 192 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhc-------C----------ccceeccCHHHH
Confidence 46899999999999998887653 3 489999999999887654433221 1 112334443 56
Q ss_pred ccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCC
Q 010109 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (518)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (518)
+++||+|+.|+|....+ +. .+.+++++-|....|
T Consensus 193 v~~aDiIvt~T~s~~Pi----l~--~~~l~~G~hI~aiGa 226 (330)
T COG2423 193 VEGADIVVTATPSTEPV----LK--AEWLKPGTHINAIGA 226 (330)
T ss_pred hhcCCEEEEecCCCCCe----ec--HhhcCCCcEEEecCC
Confidence 89999999999876432 21 124567776654443
No 341
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=96.15 E-value=0.03 Score=54.05 Aligned_cols=108 Identities=16% Similarity=0.176 Sum_probs=75.3
Q ss_pred cccCcccccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccC-cCceeeccccccc--CCCC
Q 010109 217 GVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYS-KDRIVGAHFFSPA--HVMP 293 (518)
Q Consensus 217 ~~~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~-~~r~ig~hf~~P~--~~~~ 293 (518)
.++|.++++++|++|.=.|-... --.+++++..++++++|| +||-|+|...+...+.. ..+-+|+.-|.|. +.++
T Consensus 132 tsDD~EAvk~aei~I~ftPfG~~-t~~Iikki~~~ipEgAII-~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaVPgt~ 209 (342)
T PRK00961 132 TTDDREAVADADIVITWLPKGGM-QPDIIEKFADDIKEGAIV-THACTIPTTKFAKIFKDLGRDDLNVTSYHPGAVPEMK 209 (342)
T ss_pred ecCcHHHhcCCCEEEEecCCCCC-chHHHHHHHhhCCCCCEE-eccccCCHHHHHHHHHHhCcccCCeeccCCCCCCCCC
Confidence 34567889999999999986532 247788899999999988 57778877655444321 1123444444442 3344
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCcEEEeC
Q 010109 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (518)
Q Consensus 294 lveiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (518)
.-..+.-...+++.+++..++.+..|+.+.++.
T Consensus 210 Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~P 242 (342)
T PRK00961 210 GQVYIAEGYADEEAVEKLYEIGKKARGNAFKMP 242 (342)
T ss_pred CceecccccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 333444456789999999999999999999886
No 342
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.14 E-value=0.018 Score=57.08 Aligned_cols=73 Identities=16% Similarity=0.274 Sum_probs=54.7
Q ss_pred eEEEEEeCCc-chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 010109 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~-MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (518)
++|.|||.|. +|..+|..|...|..|++++.....+. +.+++
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~ 201 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA-------------------------------------SYLKD 201 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHHhh
Confidence 6899999987 999999999999999999987542221 23578
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (518)
||+||.|++...-+.. ..+++++++++..+.
T Consensus 202 ADIVIsAvg~p~~i~~-------~~vk~gavVIDvGi~ 232 (286)
T PRK14175 202 ADVIVSAVGKPGLVTK-------DVVKEGAVIIDVGNT 232 (286)
T ss_pred CCEEEECCCCCcccCH-------HHcCCCcEEEEcCCC
Confidence 9999999975422222 246788888776543
No 343
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.14 E-value=0.017 Score=53.21 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=33.0
Q ss_pred EEEEeC-CcchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 010109 150 VAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (518)
Q Consensus 150 V~VIGa-G~MG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (518)
|.|+|+ |.+|..++..|++.|++|++.-|++++++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~ 37 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED 37 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc
Confidence 689997 999999999999999999999999987653
No 344
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.14 E-value=0.012 Score=61.04 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=36.2
Q ss_pred eEEEEEeCCcchHHHHHHHHhCC-CcEEEEeCCHHHHHHHH
Q 010109 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGI 187 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G-~~V~l~d~~~~~~~~~~ 187 (518)
++|.|||+|-||..+|.+|+.+| ..|++.+|+.+++....
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La 219 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELA 219 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence 57999999999999999999999 58999999999887644
No 345
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.13 E-value=0.038 Score=58.34 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=33.5
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHH
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFL 183 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~ 183 (518)
.++|.|||.|.+|.++|..|.+.|++|+++|++++.+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~ 39 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL 39 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 3689999999999999999999999999999987644
No 346
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.13 E-value=0.066 Score=54.06 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=28.2
Q ss_pred eEEEEEeCCcchHHHHHHHHhC-CCcEE-EEeCCH
Q 010109 148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNE 180 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~-G~~V~-l~d~~~ 180 (518)
.||+|||.|.||..++..+.+. +++++ ++|+++
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~ 38 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRG 38 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCc
Confidence 5999999999999999988765 78876 579985
No 347
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.13 E-value=0.027 Score=56.98 Aligned_cols=94 Identities=15% Similarity=0.144 Sum_probs=62.6
Q ss_pred ceEEEEEeCCcchHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 010109 147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (518)
.++++|||+|.++...+..+... --+|.+|++++++.++..+.++. .+ + .+....+. +.
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~-------~~-~----------~v~~~~~~~~a 189 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA-------LG-F----------AVNTTLDAAEV 189 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------cC-C----------cEEEECCHHHH
Confidence 35899999999999998877653 23899999999998875543211 11 0 12233444 55
Q ss_pred ccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC
Q 010109 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (518)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (518)
+++||+|+.|.+.... +|. .+.+++++.|....|.
T Consensus 190 v~~ADIV~taT~s~~P----~~~--~~~l~~G~hi~~iGs~ 224 (315)
T PRK06823 190 AHAANLIVTTTPSREP----LLQ--AEDIQPGTHITAVGAD 224 (315)
T ss_pred hcCCCEEEEecCCCCc----eeC--HHHcCCCcEEEecCCC
Confidence 8999999999875533 332 1246778777655554
No 348
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.12 E-value=0.058 Score=45.95 Aligned_cols=68 Identities=29% Similarity=0.361 Sum_probs=47.1
Q ss_pred eEEEEEeCCcchHHHHHHHHhC--CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 010109 148 KKVAILGGGLMGSGIATALILS--NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~--G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (518)
.||+|||+|.+|......+... +.+| .++|++++..+...+. .| +...+++++
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~----------~~-------------~~~~~~~~~l 57 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK----------YG-------------IPVYTDLEEL 57 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------TT-------------SEEESSHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH----------hc-------------ccchhHHHHH
Confidence 3899999999999999888776 4555 4889999887764211 11 123344443
Q ss_pred cc--CCCEEEEecccCh
Q 010109 224 FK--DVDMVIEAIIENV 238 (518)
Q Consensus 224 ~~--~aDlVIeav~e~~ 238 (518)
++ +.|+|+.++|...
T Consensus 58 l~~~~~D~V~I~tp~~~ 74 (120)
T PF01408_consen 58 LADEDVDAVIIATPPSS 74 (120)
T ss_dssp HHHTTESEEEEESSGGG
T ss_pred HHhhcCCEEEEecCCcc
Confidence 33 6899999888764
No 349
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.06 E-value=0.085 Score=50.06 Aligned_cols=130 Identities=25% Similarity=0.277 Sum_probs=83.5
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE-KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (518)
++|.|||+|..|..=+..|++.|-+|+++..+. +.+.. +...+.+.. +...-+.+.+.+
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~-----------~~~~~~i~~---------~~~~~~~~~~~~ 72 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKA-----------LIEEGKIKW---------IEREFDAEDLDD 72 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHH-----------HHHhcCcch---------hhcccChhhhcC
Confidence 589999999999999999999999999997766 33322 223333221 111112345677
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeeccccccc--CCCCeEEEEeCCCCc
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTS 304 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~--~~~~lveiv~g~~t~ 304 (518)
+++||-|+. |.++.+.+++...+ ..+++ |.. ..|.. ..|+.|. +..++..-|.+.+.+
T Consensus 73 ~~lviaAt~-d~~ln~~i~~~a~~----~~i~v-Nv~-----------D~p~~---~~f~~Pa~~~r~~l~iaIsT~G~s 132 (210)
T COG1648 73 AFLVIAATD-DEELNERIAKAARE----RRILV-NVV-----------DDPEL---CDFIFPAIVDRGPLQIAISTGGKS 132 (210)
T ss_pred ceEEEEeCC-CHHHHHHHHHHHHH----hCCce-ecc-----------CCccc---CceecceeeccCCeEEEEECCCCC
Confidence 999999985 55666666665443 33443 321 22332 3566665 446777677777788
Q ss_pred HHHHHHHHHHHHh
Q 010109 305 PQVIVDLLDIGKK 317 (518)
Q Consensus 305 ~e~~~~~~~l~~~ 317 (518)
|.....+++-++.
T Consensus 133 P~la~~ir~~Ie~ 145 (210)
T COG1648 133 PVLARLLREKIEA 145 (210)
T ss_pred hHHHHHHHHHHHH
Confidence 8877777766555
No 350
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.05 E-value=0.0088 Score=58.86 Aligned_cols=96 Identities=23% Similarity=0.303 Sum_probs=65.4
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (518)
.||+|||.|..|..-|+...--|-+|++.|+|.+++...-. .. .+++ .-+.+...++ +.+..
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd--------~f-~~rv--------~~~~st~~~iee~v~~ 231 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDD--------LF-GGRV--------HTLYSTPSNIEEAVKK 231 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhH--------hh-Ccee--------EEEEcCHHHHHHHhhh
Confidence 58999999999999999888889999999999998875321 10 1111 0111111223 45899
Q ss_pred CCEEEEec--ccChHhHHHHHHHHhhhCCCCcEEEEc
Q 010109 227 VDMVIEAI--IENVSLKQQIFADLEKYCPPHCILASN 261 (518)
Q Consensus 227 aDlVIeav--~e~~~~k~~v~~~l~~~~~~~~il~sn 261 (518)
+|+||-+| |-.. --+-++++..+.++++++|++.
T Consensus 232 aDlvIgaVLIpgak-aPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 232 ADLVIGAVLIPGAK-APKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred ccEEEEEEEecCCC-CceehhHHHHHhcCCCcEEEEE
Confidence 99999988 2211 1234567777788999988764
No 351
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.05 E-value=0.015 Score=58.49 Aligned_cols=94 Identities=17% Similarity=0.198 Sum_probs=62.3
Q ss_pred eEEEEEeCCcchHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 010109 148 KKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (518)
++++|||+|.+|..-+..++.- .+ +|.+|++++++.++..+++...+ | -.+....+. +.+
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~-----------~~v~~~~~~~eav 180 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G-----------VDIRPVDNAEAAL 180 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHHH
Confidence 6899999999999888877653 33 79999999999887655443211 1 012333444 568
Q ss_pred cCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC
Q 010109 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (518)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (518)
.+||+|+.|.+.... +|. .+.++|++-|....|.
T Consensus 181 ~~aDIV~taT~s~~P----~~~--~~~l~pg~hV~aiGs~ 214 (301)
T PRK06407 181 RDADTITSITNSDTP----IFN--RKYLGDEYHVNLAGSN 214 (301)
T ss_pred hcCCEEEEecCCCCc----Eec--HHHcCCCceEEecCCC
Confidence 999999999876533 231 1245677666554443
No 352
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.03 E-value=0.016 Score=59.24 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=31.0
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCH
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~ 180 (518)
.||.|||+|.+|+.+|..|+.+|+ +++++|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 589999999999999999999999 999999974
No 353
>PRK06153 hypothetical protein; Provisional
Probab=95.98 E-value=0.015 Score=59.73 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=29.9
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCC
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~ 179 (518)
.+|+|||+|-.|+.++..|++.|. +++++|.+
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 589999999999999999999998 89999876
No 354
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.98 E-value=0.0086 Score=62.53 Aligned_cols=38 Identities=29% Similarity=0.395 Sum_probs=32.2
Q ss_pred EEEEeCCcchHHHHHHHHhCC-C-cEEEEeCCHHHHHHHH
Q 010109 150 VAILGGGLMGSGIATALILSN-Y-PVILKEVNEKFLEAGI 187 (518)
Q Consensus 150 V~VIGaG~MG~~iA~~la~~G-~-~V~l~d~~~~~~~~~~ 187 (518)
|.|+|+|.+|+.++..|++.+ + +|++.|++.+++++..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~ 40 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLA 40 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHH
Confidence 789999999999999999986 4 8999999999987754
No 355
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.98 E-value=0.036 Score=59.51 Aligned_cols=40 Identities=20% Similarity=0.107 Sum_probs=36.9
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (518)
.||.|+|+|.+|...++.+...|.+|+++|+++++++.+.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~ae 205 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVE 205 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 6999999999999999999999999999999999988754
No 356
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.97 E-value=0.081 Score=44.83 Aligned_cols=89 Identities=21% Similarity=0.228 Sum_probs=56.7
Q ss_pred EEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cC---c--cc
Q 010109 150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---Y--ES 223 (518)
Q Consensus 150 V~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~--~~ 223 (518)
|.|+|.|.+|..++..|.+.+.+|+++|.+++..+.+.+ .|. .-+... ++ + ..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-----------~~~----------~~i~gd~~~~~~l~~a~ 59 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-----------EGV----------EVIYGDATDPEVLERAG 59 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-----------TTS----------EEEES-TTSHHHHHHTT
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-----------ccc----------ccccccchhhhHHhhcC
Confidence 579999999999999999977799999999998876542 221 011110 01 1 23
Q ss_pred ccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEE
Q 010109 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (518)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~s 260 (518)
+.+++.||.+.+++. ....+...+.+..+.-.+++-
T Consensus 60 i~~a~~vv~~~~~d~-~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 60 IEKADAVVILTDDDE-ENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp GGCESEEEEESSSHH-HHHHHHHHHHHHTTTSEEEEE
T ss_pred ccccCEEEEccCCHH-HHHHHHHHHHHHCCCCeEEEE
Confidence 688999999887653 333333344444444455544
No 357
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.94 E-value=0.048 Score=58.09 Aligned_cols=39 Identities=28% Similarity=0.344 Sum_probs=36.0
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (518)
|+|.|+|+|.+|..++..|...|++|+++|++++.++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~ 39 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRL 39 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence 489999999999999999999999999999999987654
No 358
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=95.92 E-value=0.051 Score=52.67 Aligned_cols=105 Identities=17% Similarity=0.228 Sum_probs=72.9
Q ss_pred ccCcccccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhh---hhccCcCceeeccccccc--CCC
Q 010109 218 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG---ERTYSKDRIVGAHFFSPA--HVM 292 (518)
Q Consensus 218 ~~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la---~~~~~~~r~ig~hf~~P~--~~~ 292 (518)
++|.++++++|++|.=.|-... --.+++++..++++++|| +||-|+|...+. +.++| +-+|+.-|.|. +.+
T Consensus 131 sDD~EAv~~aei~I~ftPfG~~-q~~Iikkii~~lpEgAII-~~tCTIpt~~ly~ilE~l~R--~DvgVsS~HPaaVPgt 206 (340)
T TIGR01723 131 TDDREAVEDADIIITWLPKGNK-QPDIIKKFIDDIPEGAIV-THACTIPTTKFAKIFEDLGR--EDLNVTSYHPGCVPEM 206 (340)
T ss_pred cCcHHHhcCCCEEEEEcCCCCC-chHHHHHHHhhCCCCCEE-eccccCChHHHHHHHHhhCc--ccCCeeccCCCCCCCC
Confidence 4567889999999999986542 247788889999999988 477788776443 33443 33444444442 223
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCcEEEeC
Q 010109 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (518)
Q Consensus 293 ~lveiv~g~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (518)
+-=-.+.....+++.+++..++.+..|+.+.++.
T Consensus 207 ~~q~Yi~egyAtEEqI~klveL~~sa~k~ay~~P 240 (340)
T TIGR01723 207 KGQVYIAEGYASEEAVNKLYELGKKARGKAFKMP 240 (340)
T ss_pred CCceEeecccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 3222233445678999999999999999999886
No 359
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=95.90 E-value=0.022 Score=56.27 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=25.9
Q ss_pred eEEEEEe-CCcchHHHHHHHHh-CCCcEE-EEeCC
Q 010109 148 KKVAILG-GGLMGSGIATALIL-SNYPVI-LKEVN 179 (518)
Q Consensus 148 ~kV~VIG-aG~MG~~iA~~la~-~G~~V~-l~d~~ 179 (518)
.||+|+| +|.||..++..+.. .+++++ ++|++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~ 36 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH 36 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 5999999 59999999999886 477755 56743
No 360
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=95.86 E-value=0.016 Score=58.63 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=54.0
Q ss_pred eEEEEEeCCcchHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 010109 148 KKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (518)
++++|||+|..+..-+..++. .++ +|.+|+++++++++..+++.+ + + -.+....+. +++
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-~------~-----------~~v~~~~~~~~av 190 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-L------G-----------VPVVAVDSAEEAV 190 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-C------C-----------TCEEEESSHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-c------c-----------ccceeccchhhhc
Confidence 589999999999998887655 344 899999999988876544322 1 1 123344454 568
Q ss_pred cCCCEEEEecccCh--HhHHHHHHHHhhhCCCCcEEEEcCCC
Q 010109 225 KDVDMVIEAIIENV--SLKQQIFADLEKYCPPHCILASNTST 264 (518)
Q Consensus 225 ~~aDlVIeav~e~~--~~k~~v~~~l~~~~~~~~il~sntS~ 264 (518)
++||+|+.|.+... .+ |. .+.+++++.|.+..|.
T Consensus 191 ~~aDii~taT~s~~~~P~----~~--~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 191 RGADIIVTATPSTTPAPV----FD--AEWLKPGTHINAIGSY 226 (313)
T ss_dssp TTSSEEEE----SSEEES----B---GGGS-TT-EEEE-S-S
T ss_pred ccCCEEEEccCCCCCCcc----cc--HHHcCCCcEEEEecCC
Confidence 99999999998664 22 21 2357788877766654
No 361
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.84 E-value=0.028 Score=55.97 Aligned_cols=71 Identities=18% Similarity=0.308 Sum_probs=51.6
Q ss_pred eEEEEEeCCc-chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 010109 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~-MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (518)
++|.|||.|. .|.+|+..|...|.+|+++++....+. +.+++
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~-------------------------------------~~~~~ 202 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLP-------------------------------------ELVKQ 202 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHH-------------------------------------HHhcc
Confidence 5899999997 999999999999999999997433221 12468
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcC
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (518)
+|+||.|++...-+.. +.+++++++.+..
T Consensus 203 aDIvI~AtG~~~~v~~-------~~lk~gavViDvg 231 (283)
T PRK14192 203 ADIIVGAVGKPELIKK-------DWIKQGAVVVDAG 231 (283)
T ss_pred CCEEEEccCCCCcCCH-------HHcCCCCEEEEEE
Confidence 9999999953221221 3467888776543
No 362
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.83 E-value=0.019 Score=55.36 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=30.1
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCc---EEEEeCC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYP---VILKEVN 179 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~---V~l~d~~ 179 (518)
+||.|+|+|.+|.+||..|...|.. |+++|++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 4899999999999999999999985 9999999
No 363
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.81 E-value=0.014 Score=58.11 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=36.2
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIG 188 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~ 188 (518)
++|.|+|+|-.|++|+..|+..|. +|+++||+.++.+...+
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~ 169 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALAD 169 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Confidence 589999999999999999999997 79999999988766443
No 364
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.81 E-value=0.024 Score=62.31 Aligned_cols=95 Identities=15% Similarity=0.176 Sum_probs=61.2
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc--cccc
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESFK 225 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~ 225 (518)
.+|-|+|+|.+|..+|..|.+.|++|+++|.|+++++.+.+ .|.. ...+..+-...+ ..++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-----------~g~~------~i~GD~~~~~~L~~a~i~ 480 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE-----------RGIR------AVLGNAANEEIMQLAHLD 480 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-----------CCCe------EEEcCCCCHHHHHhcCcc
Confidence 58999999999999999999999999999999998876532 1110 000000000001 2367
Q ss_pred CCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEE
Q 010109 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~s 260 (518)
+||.||.+++++.+.. .+...+.+..+.-.|++-
T Consensus 481 ~a~~viv~~~~~~~~~-~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 481 CARWLLLTIPNGYEAG-EIVASAREKRPDIEIIAR 514 (558)
T ss_pred ccCEEEEEcCChHHHH-HHHHHHHHHCCCCeEEEE
Confidence 9999999998875432 233334444333345543
No 365
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.80 E-value=0.016 Score=45.81 Aligned_cols=35 Identities=34% Similarity=0.597 Sum_probs=32.7
Q ss_pred EEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHH
Q 010109 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFL 183 (518)
Q Consensus 149 kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~ 183 (518)
||.|||+|..|.-+|..|+..|.+|+++++++.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 68999999999999999999999999999987755
No 366
>PRK06199 ornithine cyclodeaminase; Validated
Probab=95.78 E-value=0.024 Score=58.85 Aligned_cols=75 Identities=23% Similarity=0.229 Sum_probs=52.0
Q ss_pred ceEEEEEeCCcchHHHHHHHHhC--CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 010109 147 VKKVAILGGGLMGSGIATALILS--NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~--G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (518)
.++++|||+|.++......++.- .+ +|.+|+++++++++..+++...+. |. ..+....+. +
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~-----~~----------~~v~~~~s~~e 219 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYP-----QI----------TNVEVVDSIEE 219 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC-----CC----------ceEEEeCCHHH
Confidence 46899999999999999887762 24 899999999998876544332110 10 013334444 4
Q ss_pred cccCCCEEEEeccc
Q 010109 223 SFKDVDMVIEAIIE 236 (518)
Q Consensus 223 ~~~~aDlVIeav~e 236 (518)
.+++||+|+-|.+.
T Consensus 220 av~~ADIVvtaT~s 233 (379)
T PRK06199 220 VVRGSDIVTYCNSG 233 (379)
T ss_pred HHcCCCEEEEccCC
Confidence 58899999988854
No 367
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.75 E-value=0.0066 Score=61.39 Aligned_cols=49 Identities=6% Similarity=-0.272 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCccccccccccccccCch---hhHHHHHHHH
Q 010109 463 LLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFL---SHVLSWLKEL 513 (518)
Q Consensus 463 ~i~~r~~~~~~nea~~~l~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~ 513 (518)
-|.||++.++++||+.++++++.|+++|| ..+..+.|++ +||+.+.|..
T Consensus 188 ~i~nrl~~a~~~EA~~l~~~g~~~~~~id--~~~~~~~g~~~~~~gp~~~~d~~ 239 (308)
T PRK06129 188 FVLNRLQGALLREAFRLVADGVASVDDID--AVIRDGLGLRWSFMGPFETIDLN 239 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHHhccCCCccCcCHHHHHhcc
Confidence 48999999999999999999999999999 8888899987 8999999964
No 368
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.66 E-value=0.029 Score=62.06 Aligned_cols=98 Identities=16% Similarity=0.102 Sum_probs=63.7
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc--cccc
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESFK 225 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~ 225 (518)
.+|.|+|.|.+|..+++.|.+.|++|+++|.|++.++.+.+ .|.. ...+..+-..-+ ..+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~~------v~~GDat~~~~L~~agi~ 463 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-----------YGYK------VYYGDATQLELLRAAGAE 463 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------CCCe------EEEeeCCCHHHHHhcCCc
Confidence 58999999999999999999999999999999998876532 1210 000000000001 2478
Q ss_pred CCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCC
Q 010109 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (518)
+||.||.+++++.. ...+...+.+..++-.|++-..+
T Consensus 464 ~A~~vv~~~~d~~~-n~~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 464 KAEAIVITCNEPED-TMKIVELCQQHFPHLHILARARG 500 (601)
T ss_pred cCCEEEEEeCCHHH-HHHHHHHHHHHCCCCeEEEEeCC
Confidence 99999999987643 33444445555444456654443
No 369
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.63 E-value=0.053 Score=58.14 Aligned_cols=40 Identities=20% Similarity=0.121 Sum_probs=36.3
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (518)
.||.|+|+|.+|...+..+...|..|+++|+++++++.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~ 204 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ 204 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 6999999999999999999999999999999999876644
No 370
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.62 E-value=0.09 Score=53.93 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.8
Q ss_pred eEEEEEeCCcchHHHHHHHHhC
Q 010109 148 KKVAILGGGLMGSGIATALILS 169 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~ 169 (518)
.+|+|+|+|+||+.++..+.+.
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 5899999999999999988765
No 371
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.61 E-value=0.012 Score=61.82 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=31.8
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCH
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~ 180 (518)
|.+|.|||+|.+|.++|..|++.|++|+++|++.
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3589999999999999999999999999999975
No 372
>PRK07589 ornithine cyclodeaminase; Validated
Probab=95.61 E-value=0.064 Score=54.92 Aligned_cols=96 Identities=11% Similarity=0.189 Sum_probs=60.7
Q ss_pred ceEEEEEeCCcchHHHHHHHHh-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 010109 147 VKKVAILGGGLMGSGIATALIL-SN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~-~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (518)
.++++|||+|..+..-+..++. .. -+|++|++++++.++..+++.+ .+ + .+....+. +.
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~-~----------~v~~~~~~~~a 190 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PG-L----------RIVACRSVAEA 190 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cC-C----------cEEEeCCHHHH
Confidence 3689999999999888765554 23 4899999999998876554321 11 0 12233444 45
Q ss_pred ccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC
Q 010109 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (518)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (518)
+++||+|+-|++.... ..+|. .+.+++++.|....|.
T Consensus 191 v~~ADIIvtaT~S~~~--~Pvl~--~~~lkpG~hV~aIGs~ 227 (346)
T PRK07589 191 VEGADIITTVTADKTN--ATILT--DDMVEPGMHINAVGGD 227 (346)
T ss_pred HhcCCEEEEecCCCCC--Cceec--HHHcCCCcEEEecCCC
Confidence 8999999999874320 01121 1245778766555543
No 373
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.59 E-value=0.11 Score=55.89 Aligned_cols=37 Identities=30% Similarity=0.409 Sum_probs=33.3
Q ss_pred cceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHH
Q 010109 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (518)
Q Consensus 146 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~ 182 (518)
..+||.|+|+|..|.++|..|.+.|++|+++|++...
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~ 50 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA 50 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH
Confidence 3478999999999999999999999999999987653
No 374
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=95.47 E-value=0.054 Score=52.34 Aligned_cols=160 Identities=13% Similarity=0.152 Sum_probs=78.6
Q ss_pred EEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc-------------c
Q 010109 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTIS-------------L 214 (518)
Q Consensus 149 kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~-------------~ 214 (518)
||.|||+|..|+.++..|+..|+ +++++|.+.=.......++ +-+.-.-|+-..+.+.+.+. +
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQf---lf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~ 77 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQF---LFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNK 77 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhcccc---CCChhhCChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 58999999999999999999998 7888887642211110000 00000011111111111111 1
Q ss_pred cccccC--cccccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEE-cCCCcchhhhhhhccCcCceeecccccccCC
Q 010109 215 LTGVLD--YESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS-NTSTIDLNLIGERTYSKDRIVGAHFFSPAHV 291 (518)
Q Consensus 215 i~~~~~--~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~s-ntS~l~i~~la~~~~~~~r~ig~hf~~P~~~ 291 (518)
+....+ .+.+++.|+||.|+- +.+. +..+.+.-... +..++. .+.+.. ....-..+........++..|...
T Consensus 78 i~~~~~~~~~f~~~~DvVi~a~D-n~~a-R~~ln~~c~~~--~iplI~~g~~G~~-G~v~vi~p~~t~c~~C~~~~~~~~ 152 (234)
T cd01484 78 VGPEQDFNDTFFEQFHIIVNALD-NIIA-RRYVNGMLIFL--IVPLIESGTEGFK-GNAQVILPGMTECIECTLYPPQKN 152 (234)
T ss_pred CChhhhchHHHHhCCCEEEECCC-CHHH-HHHHHHHHHHc--CCCEEEEcccCCc-eEEEEEcCCCCCCcccCCCCCCCC
Confidence 110011 123688999999974 4443 33344332222 233333 232221 111111111112333334333334
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHH
Q 010109 292 MPLLEIVRTNQTSPQVIVDLLDIGK 316 (518)
Q Consensus 292 ~~lveiv~g~~t~~e~~~~~~~l~~ 316 (518)
.|+..+-..+....-.++.++.++.
T Consensus 153 ~p~Cti~~~P~~~~hci~~a~~~~~ 177 (234)
T cd01484 153 FPMCTIASMPRLPEHCIEWARMLQW 177 (234)
T ss_pred CCccccCCCCCCchHHHHHHHHHHh
Confidence 6777777777777778888887765
No 375
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.43 E-value=0.03 Score=56.10 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=31.2
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCc-EEEEeCCHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEK 181 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~-V~l~d~~~~ 181 (518)
+++.|+|+|-+|.+|+..|+..|.. |++++|+.+
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~ 161 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD 161 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch
Confidence 5789999999999999999999996 999999973
No 376
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.39 E-value=0.19 Score=53.54 Aligned_cols=33 Identities=36% Similarity=0.482 Sum_probs=31.6
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCH
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~ 180 (518)
++|.|+|+|.+|.++|..|++.|++|+++|++.
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 689999999999999999999999999999985
No 377
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.30 E-value=0.15 Score=54.22 Aligned_cols=41 Identities=37% Similarity=0.421 Sum_probs=37.3
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (518)
.++|.|+|+|.+|..++..|...|++|+++|.+++..+...
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~ 271 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELA 271 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence 57899999999999999999999999999999999877643
No 378
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.29 E-value=0.048 Score=54.51 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=31.1
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK 181 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~~ 181 (518)
++|.|||+|-.+++|+..++..|. +|++++|+++
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 589999999999999999999997 8999999965
No 379
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.28 E-value=0.058 Score=53.40 Aligned_cols=39 Identities=31% Similarity=0.238 Sum_probs=34.8
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG 186 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~~~~~~~ 186 (518)
++|.|+|+|-.+++++..|++.|. +|++++|++++.+..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l 162 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL 162 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 479999999999999999999997 599999999877653
No 380
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=95.27 E-value=0.037 Score=57.73 Aligned_cols=39 Identities=26% Similarity=0.470 Sum_probs=33.4
Q ss_pred eEEEEEeCCcchHHH-HHHHHhCCCcEEEEeCCHHHHHHH
Q 010109 148 KKVAILGGGLMGSGI-ATALILSNYPVILKEVNEKFLEAG 186 (518)
Q Consensus 148 ~kV~VIGaG~MG~~i-A~~la~~G~~V~l~d~~~~~~~~~ 186 (518)
|||.++|+|.||++. ...|.++|++|+++|++++.++..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL 40 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDAL 40 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence 589999999999865 778888999999999988766553
No 381
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=95.22 E-value=0.053 Score=55.67 Aligned_cols=100 Identities=15% Similarity=0.152 Sum_probs=57.5
Q ss_pred ceEEEEEeC-CcchHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc--
Q 010109 147 VKKVAILGG-GLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-- 222 (518)
Q Consensus 147 ~~kV~VIGa-G~MG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-- 222 (518)
++||+|||+ |.+|..++..+... +++++.+-.+.+..+... ..+ +.+.. . .... ..+++
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~----~~~------~~~~~-----~-~~~~-~~~~~~~ 64 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLS----DVH------PHLRG-----L-VDLV-LEPLDPE 64 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchH----HhC------ccccc-----c-cCce-eecCCHH
Confidence 479999997 99999999998876 677655432322211111 000 00000 0 0000 11111
Q ss_pred cccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchh
Q 010109 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (518)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~ 268 (518)
...++|+|+.|+|.... .++..++ ...++.++++++...+.
T Consensus 65 ~~~~vD~Vf~alP~~~~--~~~v~~a---~~aG~~VID~S~~fR~~ 105 (343)
T PRK00436 65 ILAGADVVFLALPHGVS--MDLAPQL---LEAGVKVIDLSADFRLK 105 (343)
T ss_pred HhcCCCEEEECCCcHHH--HHHHHHH---HhCCCEEEECCcccCCC
Confidence 35689999999997643 3333333 23578899999987663
No 382
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.22 E-value=0.063 Score=59.65 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=60.8
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc--ccc
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESF 224 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~ 224 (518)
-++|-|+|.|.+|..+++.|.+.|++|+++|.|++.++.+.+ .|.. -..+..+-..-+ ..+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~~------v~~GDat~~~~L~~agi 462 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK-----------FGMK------VFYGDATRMDLLESAGA 462 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------cCCe------EEEEeCCCHHHHHhcCC
Confidence 368999999999999999999999999999999999887532 1210 000000000001 246
Q ss_pred cCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEE
Q 010109 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (518)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~ 259 (518)
.++|+||.++.++. ....+...+.+..++-.|++
T Consensus 463 ~~A~~vvv~~~d~~-~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 463 AKAEVLINAIDDPQ-TSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred CcCCEEEEEeCCHH-HHHHHHHHHHHhCCCCeEEE
Confidence 79999999996553 33333344444444434554
No 383
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.20 E-value=0.05 Score=45.43 Aligned_cols=73 Identities=27% Similarity=0.468 Sum_probs=49.2
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (518)
++|.|||+|.+|..=+..|++.|.+|+++..+.+..+ +.+. +. ...+ +++.+
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----------------~~i~----------~~-~~~~~~~l~~ 60 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----------------GLIQ----------LI-RREFEEDLDG 60 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----------------TSCE----------EE-ESS-GGGCTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----------------hHHH----------HH-hhhHHHHHhh
Confidence 5899999999999999999999999999998861111 1111 00 1112 46889
Q ss_pred CCEEEEecccChHhHHHHHHHH
Q 010109 227 VDMVIEAIIENVSLKQQIFADL 248 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l 248 (518)
+|+||.|. ++..+.+.+.+..
T Consensus 61 ~~lV~~at-~d~~~n~~i~~~a 81 (103)
T PF13241_consen 61 ADLVFAAT-DDPELNEAIYADA 81 (103)
T ss_dssp ESEEEE-S-S-HHHHHHHHHHH
T ss_pred heEEEecC-CCHHHHHHHHHHH
Confidence 99999766 4556666655543
No 384
>PRK07877 hypothetical protein; Provisional
Probab=95.15 E-value=0.02 Score=63.99 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=28.9
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC--cEEEEeCCH
Q 010109 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNE 180 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~--~V~l~d~~~ 180 (518)
.||+|||+| .|+.+|..|+.+|. +++++|.+.
T Consensus 108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ 141 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDT 141 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCE
Confidence 589999999 89999999999995 899998864
No 385
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=95.12 E-value=0.08 Score=54.29 Aligned_cols=107 Identities=13% Similarity=0.091 Sum_probs=56.5
Q ss_pred ceEEEEEeCCcchHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh-hcccccccCccc
Q 010109 147 VKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT-ISLLTGVLDYES 223 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~-~~~i~~~~~~~~ 223 (518)
+.||||+|+|.||..++..+... +++|+ +.|.+++..+...++. .++. .+... ...... -..+....+++.
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~--G~~~---~~~~~-~~~~~~~~~~i~V~~~~~e 74 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEK--GYPL---YVADP-EREKAFEEAGIPVAGTIED 74 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhc--CCCc---cccCc-cccccccCCceEEcCChhH
Confidence 35899999999999999987754 56665 4566654433222110 0000 00000 000000 011223333433
Q ss_pred -ccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC
Q 010109 224 -FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (518)
Q Consensus 224 -~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (518)
+.++|+||+|.+.... .+... .++..++.+++|+|.
T Consensus 75 l~~~vDVVIdaT~~~~~--~e~a~---~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 75 LLEKADIVVDATPGGVG--AKNKE---LYEKAGVKAIFQGGE 111 (341)
T ss_pred hhccCCEEEECCCchhh--HHHHH---HHHHCCCEEEEcCCC
Confidence 5789999999987643 22222 233445667777764
No 386
>PRK10637 cysG siroheme synthase; Provisional
Probab=95.10 E-value=0.13 Score=54.92 Aligned_cols=130 Identities=19% Similarity=0.290 Sum_probs=81.1
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (518)
++|.|||+|..+..=+..|++.|.+|+++... ++- . .+.+.|.+. .+.-.-..+++.
T Consensus 13 ~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~-~-----------~l~~~~~i~---------~~~~~~~~~dl~ 71 (457)
T PRK10637 13 RDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQF-T-----------AWADAGMLT---------LVEGPFDESLLD 71 (457)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHH-H-----------HHHhCCCEE---------EEeCCCChHHhC
Confidence 68999999999999899999999999998543 331 1 122333321 111111235688
Q ss_pred CCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeeccccccc--CCCCeEEEEeCCCC
Q 010109 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQT 303 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~--~~~~lveiv~g~~t 303 (518)
++++||-|+. |.++.+.+. ..|....+++.+.. .|+ ...|+.|. ...+++.-|.+.+.
T Consensus 72 ~~~lv~~at~-d~~~n~~i~----~~a~~~~~lvN~~d------------~~~---~~~f~~pa~~~~g~l~iaisT~G~ 131 (457)
T PRK10637 72 TCWLAIAATD-DDAVNQRVS----EAAEARRIFCNVVD------------APK---AASFIMPSIIDRSPLMVAVSSGGT 131 (457)
T ss_pred CCEEEEECCC-CHHHhHHHH----HHHHHcCcEEEECC------------Ccc---cCeEEEeeEEecCCEEEEEECCCC
Confidence 9999988864 545544444 44444456643322 121 12355663 45677777888888
Q ss_pred cHHHHHHHHHHHHhc
Q 010109 304 SPQVIVDLLDIGKKI 318 (518)
Q Consensus 304 ~~e~~~~~~~l~~~l 318 (518)
+|.....+++-++.+
T Consensus 132 sP~~a~~lr~~ie~~ 146 (457)
T PRK10637 132 SPVLARLLREKLESL 146 (457)
T ss_pred CcHHHHHHHHHHHHh
Confidence 888888777766654
No 387
>PRK06349 homoserine dehydrogenase; Provisional
Probab=95.08 E-value=0.11 Score=54.99 Aligned_cols=35 Identities=26% Similarity=0.259 Sum_probs=26.6
Q ss_pred eEEEEEeCCcchHHHHHHHHhC--------CC--c-EEEEeCCHHH
Q 010109 148 KKVAILGGGLMGSGIATALILS--------NY--P-VILKEVNEKF 182 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~--------G~--~-V~l~d~~~~~ 182 (518)
.||+|||+|++|++++..+.++ |. + +.++|++.+.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~ 49 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEK 49 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhh
Confidence 5899999999999999877543 33 3 4466888664
No 388
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.03 E-value=0.19 Score=54.23 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=31.9
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~ 182 (518)
++|.|+|+|..|.+.+..|...|++|+++|.+++.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~ 47 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDA 47 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 58999999999999999999999999999987654
No 389
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.98 E-value=0.067 Score=55.43 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=30.0
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCC
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~ 179 (518)
.+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 479999999999999999999997 89999987
No 390
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.97 E-value=0.021 Score=58.87 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=30.5
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCH
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~ 180 (518)
.||.|||+|..|+.++..|+..|+ +++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999999999999999999998 799999874
No 391
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=94.94 E-value=0.084 Score=55.04 Aligned_cols=75 Identities=20% Similarity=0.252 Sum_probs=50.3
Q ss_pred eEEEEEeCCcchHHHHH-HHHhC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 010109 148 KKVAILGGGLMGSGIAT-ALILS-----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~-~la~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (518)
.||+|||+|.-+...-. .+... +.++.++|+++++++. +....++.+++-..+ -++..++|.
T Consensus 4 ~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~----i~~~~~~~v~~~g~~--------~kv~~ttd~ 71 (442)
T COG1486 4 FKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKI----IAILAKKLVEEAGAP--------VKVEATTDR 71 (442)
T ss_pred ceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHH----HHHHHHHHHHhhCCC--------eEEEEecCH
Confidence 58999999987765432 22222 5689999999998873 233333444432211 256677776
Q ss_pred -ccccCCCEEEEec
Q 010109 222 -ESFKDVDMVIEAI 234 (518)
Q Consensus 222 -~~~~~aDlVIeav 234 (518)
+++++||+||.++
T Consensus 72 ~eAl~gAdfVi~~~ 85 (442)
T COG1486 72 REALEGADFVITQI 85 (442)
T ss_pred HHHhcCCCEEEEEE
Confidence 5799999999887
No 392
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.91 E-value=0.054 Score=52.62 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=30.7
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK 181 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~~ 181 (518)
.||.|+|+|.+|+.+|..|+.+|. +++++|.+.-
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 589999999999999999999997 7889888753
No 393
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.87 E-value=0.078 Score=51.13 Aligned_cols=33 Identities=33% Similarity=0.342 Sum_probs=30.4
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCH
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~ 180 (518)
.+|.|||+|.+|+.++..|++.|. +++++|.+.
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 489999999999999999999998 899999764
No 394
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.84 E-value=0.057 Score=52.39 Aligned_cols=98 Identities=14% Similarity=0.162 Sum_probs=54.1
Q ss_pred eEEEEEeCCcchHHHHHHHHhCC-----------CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc
Q 010109 148 KKVAILGGGLMGSGIATALILSN-----------YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT 216 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G-----------~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~ 216 (518)
.||.|||+|..|+.++..|++.| .+++++|.+.=.....-.++ +.. ..-|+-..+.+.+.+.++.
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQl---f~~-~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQA---FYP-ADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhccc---CCh-hHCCcHHHHHHHHHHHhcc
Confidence 58999999999999999999874 28999997632111100000 100 1122222222222222211
Q ss_pred -----ccc----CcccccCCCEEEEecccChHhHHHHHHHHhh
Q 010109 217 -----GVL----DYESFKDVDMVIEAIIENVSLKQQIFADLEK 250 (518)
Q Consensus 217 -----~~~----~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~ 250 (518)
... ..+.+.++|+||.|+ ++...+..+.+...+
T Consensus 88 ~~~i~a~~~~~~~~~~~~~~DiVi~av-Dn~~aR~~l~~~~~~ 129 (244)
T TIGR03736 88 GTDWTAHPERVERSSTLHRPDIVIGCV-DNRAARLAILRAFEG 129 (244)
T ss_pred CceEEEEEeeeCchhhhcCCCEEEECC-CCHHHHHHHHHHHHH
Confidence 100 012256799999998 456666666666544
No 395
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=94.80 E-value=0.014 Score=57.95 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=28.3
Q ss_pred EEEEEeCCcchHHHHHHHHhCCC-cEEEEeCC
Q 010109 149 KVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (518)
Q Consensus 149 kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~ 179 (518)
||.|||+|..|+.+|..|+..|. +++++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 68999999999999999999998 78888865
No 396
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.79 E-value=0.07 Score=52.87 Aligned_cols=70 Identities=14% Similarity=0.285 Sum_probs=53.0
Q ss_pred eEEEEEeCCcc-hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 010109 148 KKVAILGGGLM-GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (518)
Q Consensus 148 ~kV~VIGaG~M-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (518)
++|.|||.|.. |..+|..|.+.|..|+++..... ++ +.++
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~--------------------------------------~l~~~~~ 200 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTR--------------------------------------DLAAHTR 200 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCC--------------------------------------CHHHHhh
Confidence 68999999887 99999999999999998753321 22 2467
Q ss_pred CCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcC
Q 010109 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (518)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (518)
+||+||.|++-.- ++.. ..+++++++++..
T Consensus 201 ~ADIVV~avG~~~-----~i~~--~~ik~gavVIDVG 230 (285)
T PRK14189 201 QADIVVAAVGKRN-----VLTA--DMVKPGATVIDVG 230 (285)
T ss_pred hCCEEEEcCCCcC-----ccCH--HHcCCCCEEEEcc
Confidence 8999999998432 3332 5678999887654
No 397
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.77 E-value=0.046 Score=53.83 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=30.1
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCH
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~ 180 (518)
.+|.|||+|..|+.+|..|+++|. +++++|.+.
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 489999999999999999999995 899999874
No 398
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=94.76 E-value=0.16 Score=50.85 Aligned_cols=92 Identities=18% Similarity=0.207 Sum_probs=55.5
Q ss_pred eEEEEEeCCcchHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc---
Q 010109 148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE--- 222 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--- 222 (518)
.||||||+|.+|......+.+. ++++. ++|++++....... .+.|.-. ..++++
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A---------~~~Gi~~------------~~~~ie~LL 63 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA---------RRLGVAT------------SAEGIDGLL 63 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH---------HHcCCCc------------ccCCHHHHH
Confidence 5899999999999977777654 56655 77998864321110 0123111 112222
Q ss_pred ---cccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCc
Q 010109 223 ---SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (518)
Q Consensus 223 ---~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (518)
++.+.|+|+++.+.... .+.... ....++.++++++..
T Consensus 64 ~~~~~~dIDiVf~AT~a~~H--~e~a~~---a~eaGk~VID~sPA~ 104 (302)
T PRK08300 64 AMPEFDDIDIVFDATSAGAH--VRHAAK---LREAGIRAIDLTPAA 104 (302)
T ss_pred hCcCCCCCCEEEECCCHHHH--HHHHHH---HHHcCCeEEECCccc
Confidence 23679999999986543 222222 335677788887754
No 399
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.74 E-value=0.8 Score=45.58 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=36.5
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (518)
..|+|.|+|..|.+.++....+|. +++.+|+|+++.+.++
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak 234 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAK 234 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHH
Confidence 579999999999999999988886 8999999999988865
No 400
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.74 E-value=0.053 Score=52.26 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=29.9
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCH
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~ 180 (518)
.||.|||+|..|+.+|..|+..|. +++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 589999999999999999999998 888988753
No 401
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.74 E-value=0.066 Score=52.22 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=30.1
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCH
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~ 180 (518)
.||.|||+|..|+.++..|+..|. +++++|.+.
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 589999999999999999999997 788998763
No 402
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=94.74 E-value=0.029 Score=58.96 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=31.6
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~ 181 (518)
++|.|||+|.+|.++|..|++.|++|+++|++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 4899999999999999999999999999999754
No 403
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=94.66 E-value=0.096 Score=50.43 Aligned_cols=31 Identities=32% Similarity=0.339 Sum_probs=29.1
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEE-EEeC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVI-LKEV 178 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~-l~d~ 178 (518)
++|+|.|.|.+|+.+|..|...|..|+ +.|.
T Consensus 32 ~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 689999999999999999999999988 7787
No 404
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.62 E-value=0.068 Score=55.64 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=30.2
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCC
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~ 179 (518)
.||.|||+|..|+.++..|+..|. +++++|.+
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 489999999999999999999998 79999987
No 405
>CHL00194 ycf39 Ycf39; Provisional
Probab=94.53 E-value=0.081 Score=53.57 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=32.5
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCCcEEEEeCCHHHH
Q 010109 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFL 183 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~~V~l~d~~~~~~ 183 (518)
|||.|+|+ |.+|+.++..|+++||+|++.+|+.+..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~ 37 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA 37 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh
Confidence 48999996 9999999999999999999999997643
No 406
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.52 E-value=0.25 Score=52.63 Aligned_cols=34 Identities=26% Similarity=0.172 Sum_probs=31.5
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~ 181 (518)
++|.|+|+|.+|.++|..|++.|++|+++|.+..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~ 39 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF 39 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence 5799999999999999999999999999998764
No 407
>PLN03075 nicotianamine synthase; Provisional
Probab=94.50 E-value=0.17 Score=50.44 Aligned_cols=101 Identities=18% Similarity=0.146 Sum_probs=66.1
Q ss_pred ceEEEEEeCCcchHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc-C---
Q 010109 147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL-D--- 220 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~--- 220 (518)
-++|..||+|.+|-.-...++.. +-.++.+|++++.++.+++.+... .| + ..++++.. |
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~------~g-L--------~~rV~F~~~Da~~ 188 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD------PD-L--------SKRMFFHTADVMD 188 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc------cC-c--------cCCcEEEECchhh
Confidence 36899999998876544333333 346999999999998876543210 11 1 11222221 1
Q ss_pred -cccccCCCEEEEecccC--hHhHHHHHHHHhhhCCCCcEEEEcC
Q 010109 221 -YESFKDVDMVIEAIIEN--VSLKQQIFADLEKYCPPHCILASNT 262 (518)
Q Consensus 221 -~~~~~~aDlVIeav~e~--~~~k~~v~~~l~~~~~~~~il~snt 262 (518)
.....+.|+|+..+--+ .+-|++++..+.+.++++.++..-+
T Consensus 189 ~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 189 VTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 12356899999886322 2458899999999999999887655
No 408
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.16 Score=50.03 Aligned_cols=110 Identities=20% Similarity=0.276 Sum_probs=67.2
Q ss_pred HHHhhhhcCCCCCCCCCCCCCcccceEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcC
Q 010109 123 HIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKG 201 (518)
Q Consensus 123 ~aF~~kr~~~k~~~~~~~~~~~~~~~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g 201 (518)
.+||.+....|..+ +-|.|||+|..|+-.+..|++.|. .+.++|.++-.+.....+.- ..+..-|
T Consensus 61 ~aFfGee~m~kl~~-----------syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~---Atl~DVG 126 (430)
T KOG2018|consen 61 YAFFGEEGMEKLTN-----------SYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSC---ATLADVG 126 (430)
T ss_pred HhhhhhhHHHHhcC-----------cEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhh---hhHhhcC
Confidence 47887777666421 358999999999999999999998 68888987766554332211 1112223
Q ss_pred CCCHHHHHhhhccccc------------ccCccc--ccCCCEEEEecccChHhHHHHHHH
Q 010109 202 KMTQEKFEKTISLLTG------------VLDYES--FKDVDMVIEAIIENVSLKQQIFAD 247 (518)
Q Consensus 202 ~~~~~~~~~~~~~i~~------------~~~~~~--~~~aDlVIeav~e~~~~k~~v~~~ 247 (518)
.-...-....+..|.+ ..+.++ ..+-|+|++|+ ++.+.|-.+++-
T Consensus 127 ~PK~~clkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDci-DNidtKVdLL~y 185 (430)
T KOG2018|consen 127 TPKVMCLKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCI-DNIDTKVDLLEY 185 (430)
T ss_pred CchHHHHHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhh-hhhhhhhHHHHH
Confidence 2222222222222221 112222 46799999999 567777777654
No 409
>PRK12828 short chain dehydrogenase; Provisional
Probab=94.42 E-value=0.074 Score=50.84 Aligned_cols=38 Identities=34% Similarity=0.308 Sum_probs=33.6
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 010109 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (518)
++|.|.|+ |.+|..++..|++.|++|++.+++++....
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~ 46 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQ 46 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHH
Confidence 57889987 999999999999999999999999876544
No 410
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.40 E-value=0.14 Score=52.70 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=34.7
Q ss_pred EEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHH
Q 010109 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIG 188 (518)
Q Consensus 149 kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~ 188 (518)
+|.|+|+|.+|--.++.+...|. +|++.|+++++++.+.+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 89999999999998888777885 78888999999988653
No 411
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.33 E-value=0.12 Score=51.28 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=52.2
Q ss_pred eEEEEEeCC-cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 010109 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG-~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (518)
++|.|||.| ..|..+|..|.+.|..|+++......+. +.+++
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~-------------------------------------~~~~~ 200 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS-------------------------------------FYTQN 200 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH-------------------------------------HHHHh
Confidence 689999999 8999999999999999999864332221 23578
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcC
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (518)
||+||-|+.-..-++.+ .++++++++...
T Consensus 201 ADIvV~AvG~p~~i~~~-------~vk~GavVIDvG 229 (285)
T PRK14191 201 ADIVCVGVGKPDLIKAS-------MVKKGAVVVDIG 229 (285)
T ss_pred CCEEEEecCCCCcCCHH-------HcCCCcEEEEee
Confidence 99999999543323222 457888887644
No 412
>PRK08223 hypothetical protein; Validated
Probab=94.28 E-value=0.044 Score=54.34 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=30.2
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCH
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~ 180 (518)
.+|.|||+|.+|+.++..|+.+|. +++++|.+.
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 489999999999999999999998 788998864
No 413
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=94.28 E-value=0.14 Score=53.74 Aligned_cols=163 Identities=16% Similarity=0.116 Sum_probs=80.2
Q ss_pred EEEEEeCCcchHHHHHHHHhCCC------cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccc------c
Q 010109 149 KVAILGGGLMGSGIATALILSNY------PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL------T 216 (518)
Q Consensus 149 kV~VIGaG~MG~~iA~~la~~G~------~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i------~ 216 (518)
||.|||+|..|+.++..|+..|+ +++++|.+.=.......++ +-+.-.-|+-..+.+.+.+..+ .
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQf---Lf~~~dIGk~Ka~vAa~~l~~lNp~v~I~ 77 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQF---LFRPHDVGKPKSEVAAAAVKAMNPDLKIT 77 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCc---cCChhHcCcHHHHHHHHHHHHHCCCCEEE
Confidence 58999999999999999999998 8999997642211100000 0000001111111111111111 1
Q ss_pred ccc--------C---cccccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeeccc
Q 010109 217 GVL--------D---YESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHF 285 (518)
Q Consensus 217 ~~~--------~---~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf 285 (518)
... + .+-+++.|+||.|+- +.+.+..+-+..... .-.+|-+.|.+.. ....-.+++-...-+...
T Consensus 78 a~~~~v~~~~~~~~~~~f~~~~DvVi~alD-n~~aR~~vn~~C~~~--~iPli~~gt~G~~-G~v~v~iP~~te~y~~~~ 153 (435)
T cd01490 78 ALQNRVGPETEHIFNDEFWEKLDGVANALD-NVDARMYVDRRCVYY--RKPLLESGTLGTK-GNTQVVIPHLTESYSSSR 153 (435)
T ss_pred EEecccChhhhhhhhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHh--CCCEEEEecccce-eEEEEEeCCCCCCccCCC
Confidence 100 0 122578999999973 444443333322221 1123434443321 111111111001111111
Q ss_pred ccccCCCCeEEEEeCCCCcHHHHHHHHHHHHhc
Q 010109 286 FSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKI 318 (518)
Q Consensus 286 ~~P~~~~~lveiv~g~~t~~e~~~~~~~l~~~l 318 (518)
-.|....|.+++-..+..-.-.++.++.++..+
T Consensus 154 ~p~~~~~P~Ctl~~~P~~~eHcI~wA~~~F~~l 186 (435)
T cd01490 154 DPPEKSIPLCTLKNFPNAIEHTIQWARDEFEGL 186 (435)
T ss_pred CCCCCCCCCccccCCCCCchHHHHHHHHHHHHH
Confidence 122334577788777888888999999998875
No 414
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=94.22 E-value=0.099 Score=49.95 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=29.9
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCH
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~ 180 (518)
++|+|.|.|++|+.+|..|.+.|. .|.+.|.+.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 599999999999999999999988 566789887
No 415
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=94.18 E-value=0.037 Score=60.34 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=29.5
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCC
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~ 179 (518)
.||.|||+|..|+.+|..|+..|. +++++|.+
T Consensus 339 ~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 339 LKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 589999999999999999999998 78888864
No 416
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.15 E-value=0.24 Score=49.90 Aligned_cols=32 Identities=22% Similarity=0.576 Sum_probs=29.2
Q ss_pred EEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCH
Q 010109 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (518)
Q Consensus 149 kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~ 180 (518)
||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT 33 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 68999999999999999999998 799998764
No 417
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=94.15 E-value=0.15 Score=51.39 Aligned_cols=89 Identities=25% Similarity=0.247 Sum_probs=60.5
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (518)
+++.|.|.|-.|.++|..+.-.|.+|.+++++|=.+-++ .++-....+-.++...+
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA------------------------~MdGf~V~~m~~Aa~~g 265 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEA------------------------AMDGFRVMTMEEAAKTG 265 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHH------------------------hhcCcEEEEhHHhhhcC
Confidence 567888999999999999999999999999998643221 12222222223557788
Q ss_pred CEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCc
Q 010109 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (518)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (518)
|++|.|.-...-+..+=| ..+++++|++ |....
T Consensus 266 DifiT~TGnkdVi~~eh~----~~MkDgaIl~-N~GHF 298 (420)
T COG0499 266 DIFVTATGNKDVIRKEHF----EKMKDGAILA-NAGHF 298 (420)
T ss_pred CEEEEccCCcCccCHHHH----HhccCCeEEe-ccccc
Confidence 999999865443333333 3467888775 55433
No 418
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=94.14 E-value=0.13 Score=52.82 Aligned_cols=100 Identities=21% Similarity=0.219 Sum_probs=58.4
Q ss_pred eEEEEEeC-CcchHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCccc
Q 010109 148 KKVAILGG-GLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDYES 223 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 223 (518)
+||+|||+ |.+|..++..|.+. ++++. +++.+...-+.. ...+ +.+.. . ..+... .+.+.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~----~~~~------~~l~~-----~-~~~~~~~~~~~~ 64 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPV----SEVH------PHLRG-----L-VDLNLEPIDEEE 64 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCCh----HHhC------ccccc-----c-CCceeecCCHHH
Confidence 48999999 99999999999876 66777 556554321111 0000 10100 0 000011 12233
Q ss_pred c-cCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchh
Q 010109 224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (518)
Q Consensus 224 ~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~ 268 (518)
+ .++|+||.|+|.... .++..++. ..++.+++++|...++
T Consensus 65 ~~~~~DvVf~alP~~~s--~~~~~~~~---~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 65 IAEDADVVFLALPHGVS--AELAPELL---AAGVKVIDLSADFRLK 105 (346)
T ss_pred hhcCCCEEEECCCchHH--HHHHHHHH---hCCCEEEeCChhhhcC
Confidence 3 589999999987633 34444432 3578888999876554
No 419
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=94.13 E-value=0.41 Score=44.33 Aligned_cols=40 Identities=30% Similarity=0.384 Sum_probs=31.9
Q ss_pred ceEEEEE-eC-CcchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010109 147 VKKVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (518)
Q Consensus 147 ~~kV~VI-Ga-G~MG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (518)
..|+++| |+ --+|.+|++.|+++|+.|.+.|++.+.++..
T Consensus 13 ~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~at 54 (256)
T KOG1200|consen 13 MSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEAT 54 (256)
T ss_pred hcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHH
Confidence 3566655 44 3589999999999999999999998866653
No 420
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.12 E-value=0.3 Score=51.51 Aligned_cols=36 Identities=28% Similarity=0.207 Sum_probs=33.6
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHH
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~ 182 (518)
.+||.|+|.|.-|.++|..|.+.|++|+++|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 579999999999999999999999999999987765
No 421
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=94.12 E-value=0.1 Score=47.17 Aligned_cols=74 Identities=22% Similarity=0.327 Sum_probs=48.6
Q ss_pred eEEEEEeCC-cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 010109 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG-~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (518)
++|.|||-+ ..|..++..|.+.|..|++++.....++ +.+++
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~-------------------------------------~~~~~ 79 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ-------------------------------------EITRR 79 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH-------------------------------------HHHTT
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc-------------------------------------ceeee
Confidence 589999997 5899999999999999999886643332 23578
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCc
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (518)
||+||.|+...--++. ..+++++++++.....
T Consensus 80 ADIVVsa~G~~~~i~~-------~~ik~gavVIDvG~~~ 111 (160)
T PF02882_consen 80 ADIVVSAVGKPNLIKA-------DWIKPGAVVIDVGINY 111 (160)
T ss_dssp SSEEEE-SSSTT-B-G-------GGS-TTEEEEE--CEE
T ss_pred ccEEeeeecccccccc-------ccccCCcEEEecCCcc
Confidence 9999999965433332 3578899888765443
No 422
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=94.09 E-value=0.11 Score=52.31 Aligned_cols=98 Identities=26% Similarity=0.355 Sum_probs=59.6
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 010109 148 KKVAILGG-GLMGSGIATALILSNYP---VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (518)
.+|||+|+ |..|.-+...|....++ +.++-....+=++... + .+. ...-.....+...
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~--------f--~~~--------~~~v~~~~~~~~~ 63 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIE--------F--GGK--------SIGVPEDAADEFV 63 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCcccc--------c--cCc--------cccCccccccccc
Confidence 58999998 99999999999987553 3333322221111000 0 000 0001111234456
Q ss_pred ccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchh
Q 010109 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (518)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~ 268 (518)
.+++|+|+.|.+.+.. +++..++. ..++++++|+|.+..+
T Consensus 64 ~~~~Divf~~ag~~~s--~~~~p~~~---~~G~~VIdnsSa~Rm~ 103 (334)
T COG0136 64 FSDVDIVFFAAGGSVS--KEVEPKAA---EAGCVVIDNSSAFRMD 103 (334)
T ss_pred cccCCEEEEeCchHHH--HHHHHHHH---HcCCEEEeCCcccccC
Confidence 7899999999987644 45555544 4579999999987554
No 423
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=94.09 E-value=0.13 Score=53.43 Aligned_cols=102 Identities=18% Similarity=0.311 Sum_probs=61.2
Q ss_pred cceEEEEEeC-CcchHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 010109 146 RVKKVAILGG-GLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (518)
Q Consensus 146 ~~~kV~VIGa-G~MG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (518)
..+||+|||+ |..|..+...|..+ +++|+.+..+.++-+. +......+. .+... .+. ..+.+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~----i~~~~~~l~-~~~~~---------~~~-~~~~~~ 101 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQS----FGSVFPHLI-TQDLP---------NLV-AVKDAD 101 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCC----chhhCcccc-Ccccc---------cee-cCCHHH
Confidence 4579999999 99999999999888 7799988775443211 000000000 00000 000 111233
Q ss_pred ccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchh
Q 010109 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (518)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~ 268 (518)
++++|+||.|+|.. .-.++...+ ..++.+++++|..-.+
T Consensus 102 ~~~~DvVf~Alp~~--~s~~i~~~~----~~g~~VIDlSs~fRl~ 140 (381)
T PLN02968 102 FSDVDAVFCCLPHG--TTQEIIKAL----PKDLKIVDLSADFRLR 140 (381)
T ss_pred hcCCCEEEEcCCHH--HHHHHHHHH----hCCCEEEEcCchhccC
Confidence 68899999999865 233444443 3568888998876544
No 424
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.08 E-value=2.8 Score=41.99 Aligned_cols=39 Identities=28% Similarity=0.290 Sum_probs=29.6
Q ss_pred eEEEEEeCCcchHHHHHHHHhC-CCcEEEEeCCHHHHHHHH
Q 010109 148 KKVAILGGGLMGSGIATALILS-NYPVILKEVNEKFLEAGI 187 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~-G~~V~l~d~~~~~~~~~~ 187 (518)
++|+|+|+|-+| .+|..++++ |++|+++|.+..+-+.+.
T Consensus 183 ~~vgI~GlGGLG-h~aVq~AKAMG~rV~vis~~~~kkeea~ 222 (360)
T KOG0023|consen 183 KWVGIVGLGGLG-HMAVQYAKAMGMRVTVISTSSKKKEEAI 222 (360)
T ss_pred cEEEEecCcccc-hHHHHHHHHhCcEEEEEeCCchhHHHHH
Confidence 589999998866 456666665 999999999976555443
No 425
>PRK05868 hypothetical protein; Validated
Probab=94.06 E-value=0.046 Score=56.80 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=33.1
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHHH
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~ 182 (518)
|++|.|||+|.-|...|..|+++|++|+++|++++.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 568999999999999999999999999999988653
No 426
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=94.06 E-value=0.059 Score=54.76 Aligned_cols=31 Identities=32% Similarity=0.404 Sum_probs=29.8
Q ss_pred EEEEEeCCcchHHHHHHHHhCCCcEEEEeCC
Q 010109 149 KVAILGGGLMGSGIATALILSNYPVILKEVN 179 (518)
Q Consensus 149 kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~ 179 (518)
.|.|||+|..|.++|..|++.|++|+++|++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4899999999999999999999999999998
No 427
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=94.04 E-value=0.17 Score=44.76 Aligned_cols=72 Identities=18% Similarity=0.280 Sum_probs=54.0
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 010109 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (518)
++|.|+|- ...|..++..|.+.|..|++++.+...++ +.+++
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~-------------------------------------~~v~~ 71 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ-------------------------------------SKVHD 71 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence 58999998 56699999999999999999986542222 23678
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCC
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (518)
||+||-|+....-++.+ .+++++++.+...
T Consensus 72 ADIVvsAtg~~~~i~~~-------~ikpGa~Vidvg~ 101 (140)
T cd05212 72 ADVVVVGSPKPEKVPTE-------WIKPGATVINCSP 101 (140)
T ss_pred CCEEEEecCCCCccCHH-------HcCCCCEEEEcCC
Confidence 99999999766444433 4689998876543
No 428
>PLN00016 RNA-binding protein; Provisional
Probab=94.04 E-value=0.11 Score=53.97 Aligned_cols=37 Identities=30% Similarity=0.367 Sum_probs=33.2
Q ss_pred cceEEEEE----eC-CcchHHHHHHHHhCCCcEEEEeCCHHH
Q 010109 146 RVKKVAIL----GG-GLMGSGIATALILSNYPVILKEVNEKF 182 (518)
Q Consensus 146 ~~~kV~VI----Ga-G~MG~~iA~~la~~G~~V~l~d~~~~~ 182 (518)
..+||.|+ |+ |.+|+.++..|++.||+|++++++++.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 44789999 76 999999999999999999999998764
No 429
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.04 E-value=0.06 Score=47.25 Aligned_cols=33 Identities=33% Similarity=0.457 Sum_probs=29.9
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCH
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~ 180 (518)
.||.|+|+|.+|+.++..|+..|. +++++|.+.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 589999999999999999999998 799999764
No 430
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.03 E-value=0.057 Score=47.85 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=29.6
Q ss_pred EEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCH
Q 010109 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (518)
Q Consensus 149 kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~ 180 (518)
||.|||+|.+|+.++..|+..|+ +++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 799999874
No 431
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=94.01 E-value=0.1 Score=44.62 Aligned_cols=79 Identities=13% Similarity=0.191 Sum_probs=50.6
Q ss_pred eEEEEEe----CCcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 010109 148 KKVAILG----GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (518)
Q Consensus 148 ~kV~VIG----aG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (518)
++|+||| -+.+|.-+...|.++|++|+.++...+.+. -+....++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~-----------------------------G~~~y~sl~e 51 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL-----------------------------GIKCYPSLAE 51 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET-----------------------------TEE-BSSGGG
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC-----------------------------cEEeeccccC
Confidence 5899999 588999999999999999999987654322 1122334444
Q ss_pred c-cCCCEEEEecccChHhHHHHHHHHhhhCCCCcEE
Q 010109 224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCIL 258 (518)
Q Consensus 224 ~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il 258 (518)
. ...|+++.++|.+ .--++++++.+. ....++
T Consensus 52 ~p~~iDlavv~~~~~--~~~~~v~~~~~~-g~~~v~ 84 (116)
T PF13380_consen 52 IPEPIDLAVVCVPPD--KVPEIVDEAAAL-GVKAVW 84 (116)
T ss_dssp CSST-SEEEE-S-HH--HHHHHHHHHHHH-T-SEEE
T ss_pred CCCCCCEEEEEcCHH--HHHHHHHHHHHc-CCCEEE
Confidence 4 6899999999754 334677776655 333444
No 432
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=94.00 E-value=0.067 Score=40.98 Aligned_cols=30 Identities=33% Similarity=0.515 Sum_probs=27.2
Q ss_pred EEeCCcchHHHHHHHHhCCCcEEEEeCCHH
Q 010109 152 ILGGGLMGSGIATALILSNYPVILKEVNEK 181 (518)
Q Consensus 152 VIGaG~MG~~iA~~la~~G~~V~l~d~~~~ 181 (518)
|||+|.-|...|..|+++|++|+++|.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 899999999999999999999999998764
No 433
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=93.94 E-value=0.3 Score=45.46 Aligned_cols=89 Identities=15% Similarity=0.148 Sum_probs=58.9
Q ss_pred eEEEEEeCC-cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc--cC----
Q 010109 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV--LD---- 220 (518)
Q Consensus 148 ~kV~VIGaG-~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~---- 220 (518)
++|.|||-+ ..|..+|..|.+.|..|+++|.+.-.+-. +.+.+ +-+.+ .+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~-------------~~~~~----------~hs~t~~~~~~~~ 119 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFT-------------RGESI----------RHEKHHVTDEEAM 119 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccc-------------ccccc----------ccccccccchhhH
Confidence 589999985 56999999999999999999876533211 00000 00011 12
Q ss_pred c-ccccCCCEEEEecccChH-hHHHHHHHHhhhCCCCcEEEEcCCCcc
Q 010109 221 Y-ESFKDVDMVIEAIIENVS-LKQQIFADLEKYCPPHCILASNTSTID 266 (518)
Q Consensus 221 ~-~~~~~aDlVIeav~e~~~-~k~~v~~~l~~~~~~~~il~sntS~l~ 266 (518)
+ +.+++||+||.|++...- ++.+ .+++++++++......
T Consensus 120 l~~~~~~ADIVIsAvG~~~~~i~~d-------~ik~GavVIDVGi~~d 160 (197)
T cd01079 120 TLDCLSQSDVVITGVPSPNYKVPTE-------LLKDGAICINFASIKN 160 (197)
T ss_pred HHHHhhhCCEEEEccCCCCCccCHH-------HcCCCcEEEEcCCCcC
Confidence 2 347899999999975433 4444 4678999887765543
No 434
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.94 E-value=0.18 Score=49.82 Aligned_cols=73 Identities=14% Similarity=0.234 Sum_probs=55.1
Q ss_pred eEEEEEeCC-cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 010109 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG-~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (518)
++|.|||-+ ..|..+|..|...|..|+++..+...+. +.+++
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~-------------------------------------~~~~~ 195 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLK-------------------------------------AELRQ 195 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHH-------------------------------------HHHhh
Confidence 589999998 8899999999999999999987654332 23568
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (518)
||+||-|++-..-++.+ .+++++++++....
T Consensus 196 ADIvI~Avgk~~lv~~~-------~vk~GavVIDVgi~ 226 (279)
T PRK14178 196 ADILVSAAGKAGFITPD-------MVKPGATVIDVGIN 226 (279)
T ss_pred CCEEEECCCcccccCHH-------HcCCCcEEEEeecc
Confidence 99999999633223333 35899988776543
No 435
>PRK12829 short chain dehydrogenase; Provisional
Probab=93.92 E-value=0.26 Score=47.94 Aligned_cols=38 Identities=32% Similarity=0.380 Sum_probs=34.2
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 010109 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (518)
++|.|+|+ |.+|..++..|+..|++|++.+++++.++.
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~ 50 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAA 50 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 58999987 999999999999999999999999876654
No 436
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.89 E-value=0.48 Score=50.69 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=31.7
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~ 181 (518)
+||+|+|.|.-|.++|..|.+.|++|+++|.++.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 5899999999999999999999999999998753
No 437
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.88 E-value=0.037 Score=59.78 Aligned_cols=52 Identities=6% Similarity=-0.203 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCccccccccccccccCch---hhHHHHHHHHH
Q 010109 461 LRLLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFL---SHVLSWLKELA 514 (518)
Q Consensus 461 ~~~i~~r~~~~~~nea~~~l~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~ 514 (518)
..-+.+|++.++++||+.++++++.|+++|| ..+..+.|+. +|||++.|..|
T Consensus 184 ~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id--~~~~~g~g~~~~~~Gpf~~~dl~g 238 (495)
T PRK07531 184 DAFVGDRLLEALWREALWLVKDGIATTEEID--DVIRYSFGLRWAQMGLFETYRIAG 238 (495)
T ss_pred cchhHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHhhccCCCccccchHHHHHhcC
Confidence 3457899999999999999999999999999 8888777753 89999999866
No 438
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=93.85 E-value=0.17 Score=49.64 Aligned_cols=46 Identities=28% Similarity=0.317 Sum_probs=40.1
Q ss_pred cceEEEEEeC-CcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHH
Q 010109 146 RVKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVR 191 (518)
Q Consensus 146 ~~~kV~VIGa-G~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~ 191 (518)
..+++.|-|+ +-+|..+|..|++.|++|+++.|+++++++..++++
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~ 51 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELE 51 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHH
Confidence 3467888898 899999999999999999999999999988665544
No 439
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=93.80 E-value=0.27 Score=48.86 Aligned_cols=91 Identities=18% Similarity=0.227 Sum_probs=53.8
Q ss_pred eEEEEEeCCcchHHHHHHHHh-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c
Q 010109 148 KKVAILGGGLMGSGIATALIL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F 224 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 224 (518)
.||+|||+|.||.-.+..+.+ .++++. ++|+++++...... .+.|. -...++++. +
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A---------~~~Gi------------~~~~~~~e~ll 60 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARA---------RELGV------------KTSAEGVDGLL 60 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHH---------HHCCC------------CEEECCHHHHh
Confidence 389999999999988776664 456655 67888875321110 01221 111223433 2
Q ss_pred --cCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC
Q 010109 225 --KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (518)
Q Consensus 225 --~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (518)
.+.|+|+.|.|..... +.. ...+..+..+.++++.
T Consensus 61 ~~~dIDaV~iaTp~~~H~--e~a---~~al~aGk~VIdekPa 97 (285)
T TIGR03215 61 ANPDIDIVFDATSAKAHA--RHA---RLLAELGKIVIDLTPA 97 (285)
T ss_pred cCCCCCEEEECCCcHHHH--HHH---HHHHHcCCEEEECCcc
Confidence 4689999999877542 222 2233456666666553
No 440
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=93.67 E-value=0.18 Score=47.48 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=30.3
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCH
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~ 180 (518)
.||.|||+|.+|+.++..|+.+|. +++++|.+.
T Consensus 22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 589999999999999999999998 699999763
No 441
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.66 E-value=0.2 Score=53.88 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=31.7
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHH
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~ 181 (518)
-++|.|||+|..|.++|..|++.|++|+++|.++.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 46899999999999999999999999999997653
No 442
>PRK08163 salicylate hydroxylase; Provisional
Probab=93.66 E-value=0.062 Score=56.08 Aligned_cols=34 Identities=35% Similarity=0.401 Sum_probs=32.2
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~ 181 (518)
.+|.|||+|..|...|..|+++|++|+++|++++
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 5899999999999999999999999999999865
No 443
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=93.65 E-value=0.058 Score=54.75 Aligned_cols=33 Identities=33% Similarity=0.375 Sum_probs=29.3
Q ss_pred EEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHH
Q 010109 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (518)
Q Consensus 149 kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~ 181 (518)
+|.|||+|.-|..+|..|+++|++|+++|+++.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 799999999999999999999999999999765
No 444
>PRK06753 hypothetical protein; Provisional
Probab=93.65 E-value=0.064 Score=55.48 Aligned_cols=34 Identities=35% Similarity=0.373 Sum_probs=32.0
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~ 181 (518)
++|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 4899999999999999999999999999998875
No 445
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=93.63 E-value=0.14 Score=46.85 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=31.4
Q ss_pred ccceEEEEEeCCcchHHHHHH-HH-hCCCcE-EEEeCCHHHHH
Q 010109 145 RRVKKVAILGGGLMGSGIATA-LI-LSNYPV-ILKEVNEKFLE 184 (518)
Q Consensus 145 ~~~~kV~VIGaG~MG~~iA~~-la-~~G~~V-~l~d~~~~~~~ 184 (518)
.++.+|.|||+|++|.+++.. +. ++|+++ .++|.+++.+-
T Consensus 82 ~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG 124 (211)
T COG2344 82 DKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVG 124 (211)
T ss_pred CcceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhC
Confidence 356799999999999999963 44 567764 57899998653
No 446
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=93.62 E-value=0.18 Score=51.44 Aligned_cols=73 Identities=22% Similarity=0.199 Sum_probs=48.8
Q ss_pred cceEEEEEeCCcch-HHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 010109 146 RVKKVAILGGGLMG-SGIATALILSNY---PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (518)
Q Consensus 146 ~~~kV~VIGaG~MG-~~iA~~la~~G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (518)
++.||||||+|.++ ...+..+...+. -|.++|+++++++...+. -|. -...+++
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~----------~~~------------~~~~~~~ 59 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEE----------FGI------------AKAYTDL 59 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHH----------cCC------------CcccCCH
Confidence 35799999998554 557777777663 477889999987764321 111 0234455
Q ss_pred cc-c--cCCCEEEEecccChHh
Q 010109 222 ES-F--KDVDMVIEAIIENVSL 240 (518)
Q Consensus 222 ~~-~--~~aDlVIeav~e~~~~ 240 (518)
++ + .+.|+|+.|+|.+...
T Consensus 60 ~~ll~~~~iD~V~Iatp~~~H~ 81 (342)
T COG0673 60 EELLADPDIDAVYIATPNALHA 81 (342)
T ss_pred HHHhcCCCCCEEEEcCCChhhH
Confidence 44 3 3479999999988753
No 447
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=93.50 E-value=0.072 Score=55.07 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=30.3
Q ss_pred EEEEEeCCcchHHHHHHHHhCCCcEEEEeCCH
Q 010109 149 KVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (518)
Q Consensus 149 kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~ 180 (518)
.|.|||+|.+|.++|..|++.|++|+++|++.
T Consensus 5 dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 5 DVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 59999999999999999999999999999875
No 448
>PRK14852 hypothetical protein; Provisional
Probab=93.43 E-value=0.08 Score=60.54 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=29.9
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCH
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~ 180 (518)
.||+|||+|..|+.++..|+..|+ +++++|-+.
T Consensus 333 srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~ 366 (989)
T PRK14852 333 SRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDA 366 (989)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 589999999999999999999998 788888764
No 449
>PRK07832 short chain dehydrogenase; Provisional
Probab=93.40 E-value=0.21 Score=49.14 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=33.6
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010109 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (518)
++|.|+|+ |.+|..++..|++.|++|++++++++.++..
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~ 40 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQT 40 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 36788876 8999999999999999999999998776553
No 450
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=93.38 E-value=0.46 Score=45.48 Aligned_cols=98 Identities=26% Similarity=0.292 Sum_probs=56.0
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc---------
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG--------- 217 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~--------- 217 (518)
.+|.|||.|-.|+-.+..|++.|+ +++++|.+.=.+.....++...+. .-|+-..+-..+.+..|.+
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~---~iGk~Kv~vm~eri~~InP~c~V~~~~~ 107 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLG---DIGKPKVEVMKERIKQINPECEVTAIND 107 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhh---hcccHHHHHHHHHHHhhCCCceEeehHh
Confidence 489999999999999999999998 788888765333222222211111 0121111112222221111
Q ss_pred ---ccCccc--ccCCCEEEEecccChHhHHHHHHHHh
Q 010109 218 ---VLDYES--FKDVDMVIEAIIENVSLKQQIFADLE 249 (518)
Q Consensus 218 ---~~~~~~--~~~aDlVIeav~e~~~~k~~v~~~l~ 249 (518)
..++++ ..+-|+||+|+ ++...|-.++....
T Consensus 108 f~t~en~~~~~~~~~DyvIDai-D~v~~Kv~Li~~c~ 143 (263)
T COG1179 108 FITEENLEDLLSKGFDYVIDAI-DSVRAKVALIAYCR 143 (263)
T ss_pred hhCHhHHHHHhcCCCCEEEEch-hhhHHHHHHHHHHH
Confidence 112233 35789999998 45567777766443
No 451
>PRK08374 homoserine dehydrogenase; Provisional
Probab=93.38 E-value=0.34 Score=49.53 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=19.1
Q ss_pred eEEEEEeCCcchHHHHHHHHh
Q 010109 148 KKVAILGGGLMGSGIATALIL 168 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~ 168 (518)
.+|+|+|.|++|++++..+.+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~ 23 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAE 23 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHH
Confidence 589999999999999998876
No 452
>PRK14982 acyl-ACP reductase; Provisional
Probab=93.36 E-value=0.15 Score=52.07 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=32.8
Q ss_pred eEEEEEeC-CcchHHHHHHHHhC-C-CcEEEEeCCHHHHHH
Q 010109 148 KKVAILGG-GLMGSGIATALILS-N-YPVILKEVNEKFLEA 185 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~-G-~~V~l~d~~~~~~~~ 185 (518)
++|.|+|+ |.||+.++..|+.. | .+|++++++++.+..
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~ 196 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQE 196 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHH
Confidence 58999999 89999999999864 5 589999999887665
No 453
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=93.34 E-value=0.08 Score=54.82 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=29.7
Q ss_pred EEEEEeCCcchHHHHHHHHhCCCcEEEEeCCH
Q 010109 149 KVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (518)
Q Consensus 149 kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~ 180 (518)
.|.|||+|.+|.++|..|++.|++|+++|...
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 48999999999999999999999999999853
No 454
>PRK05866 short chain dehydrogenase; Provisional
Probab=93.32 E-value=0.18 Score=50.50 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=35.0
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010109 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (518)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~ 81 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVA 81 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 57888887 99999999999999999999999988776543
No 455
>PRK06847 hypothetical protein; Provisional
Probab=93.28 E-value=0.084 Score=54.62 Aligned_cols=35 Identities=43% Similarity=0.545 Sum_probs=32.5
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHH
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~ 181 (518)
+++|.|||+|.-|...|..|++.|++|+++|++++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 56899999999999999999999999999998764
No 456
>PRK07236 hypothetical protein; Provisional
Probab=93.28 E-value=0.086 Score=54.95 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=33.0
Q ss_pred cceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHH
Q 010109 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (518)
Q Consensus 146 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~ 181 (518)
+..+|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 346899999999999999999999999999999864
No 457
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.24 E-value=0.075 Score=59.68 Aligned_cols=33 Identities=39% Similarity=0.689 Sum_probs=31.1
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCH
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~ 180 (518)
.+|.|||+|.+|.++|..|++.|++|+++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 479999999999999999999999999999874
No 458
>PRK07062 short chain dehydrogenase; Provisional
Probab=93.24 E-value=0.18 Score=49.27 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=33.8
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010109 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (518)
+.+.|.|+ |.+|..++..|++.|++|++.+++++.++...
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 49 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAE 49 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 35677777 78999999999999999999999998776543
No 459
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.22 E-value=0.23 Score=49.17 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=52.5
Q ss_pred eEEEEEeCCc-chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 010109 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~-MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (518)
++|.|||-|. .|..+|..|...|..|+++......+. +.+++
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~ 202 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLR-------------------------------------HHVRN 202 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHH-------------------------------------HHHhh
Confidence 6899999987 899999999999999999875422211 23678
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcC
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (518)
||+||.|+.-..-++. +.+++++++++..
T Consensus 203 ADIvi~avG~p~~v~~-------~~vk~gavVIDvG 231 (285)
T PRK10792 203 ADLLVVAVGKPGFIPG-------EWIKPGAIVIDVG 231 (285)
T ss_pred CCEEEEcCCCcccccH-------HHcCCCcEEEEcc
Confidence 9999999942222222 4578999887644
No 460
>PRK06057 short chain dehydrogenase; Provisional
Probab=93.17 E-value=0.16 Score=49.37 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=34.0
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 010109 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (518)
++|.|+|+ |.+|..++..|++.|++|++.++++..++.
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~ 46 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKA 46 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 57999988 999999999999999999999999876554
No 461
>PRK06196 oxidoreductase; Provisional
Probab=93.15 E-value=0.22 Score=50.31 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=35.2
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 010109 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (518)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++....
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~ 68 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALA 68 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46888887 889999999999999999999999887765443
No 462
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=93.13 E-value=0.097 Score=54.27 Aligned_cols=35 Identities=31% Similarity=0.399 Sum_probs=32.3
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHH
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~ 181 (518)
..+|.|||+|.+|.+.|..|++.|++|+++|..+.
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 36899999999999999999999999999998764
No 463
>PRK07588 hypothetical protein; Provisional
Probab=92.99 E-value=0.089 Score=54.88 Aligned_cols=34 Identities=32% Similarity=0.272 Sum_probs=31.6
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~ 181 (518)
++|.|||+|..|.+.|..|++.|++|+++|+.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 4799999999999999999999999999998764
No 464
>PRK06194 hypothetical protein; Provisional
Probab=92.95 E-value=0.2 Score=49.67 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=34.5
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010109 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (518)
++|.|.|+ |.+|..++..|++.|++|+++|++.+.++...
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 47 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAV 47 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence 57888876 89999999999999999999999987766543
No 465
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.91 E-value=0.27 Score=48.78 Aligned_cols=73 Identities=21% Similarity=0.182 Sum_probs=52.9
Q ss_pred eEEEEEeCCc-chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 010109 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~-MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (518)
++|.|||-+. .|..+|..|.+.|..|++++.....+. +.+++
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~ 207 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLK-------------------------------------KYTLD 207 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHH-------------------------------------HHHhh
Confidence 6899999987 899999999999999999884322111 23578
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (518)
||+||.|+--..-++. ..+++++++++..++
T Consensus 208 ADIvv~AvG~p~~i~~-------~~vk~gavVIDvGin 238 (287)
T PRK14176 208 ADILVVATGVKHLIKA-------DMVKEGAVIFDVGIT 238 (287)
T ss_pred CCEEEEccCCccccCH-------HHcCCCcEEEEeccc
Confidence 9999998843222222 257889998876543
No 466
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=92.87 E-value=0.23 Score=48.50 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=34.7
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010109 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (518)
|+|.|.|+ |.+|.+||..|++.|++|++.+++++.++...
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 41 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKAL 41 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 47888887 88999999999999999999999988776543
No 467
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=92.86 E-value=1 Score=44.83 Aligned_cols=33 Identities=36% Similarity=0.470 Sum_probs=30.4
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC-cEEEEeCCH
Q 010109 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~d~~~ 180 (518)
.+|.|+|+|.+|..||..|+.+|. .|+++|.+.
T Consensus 20 s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 589999999999999999999998 799999764
No 468
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=92.82 E-value=0.17 Score=51.79 Aligned_cols=143 Identities=19% Similarity=0.207 Sum_probs=76.8
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCCcE---EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCcc
Q 010109 148 KKVAILGG-GLMGSGIATALILSNYPV---ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDYE 222 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~~V---~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 222 (518)
+||+|||+ |..|..+...|.+.||++ ....++.+.-+... + .| ..+... .+..
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~------~-----~g-----------~~i~v~d~~~~ 59 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS------F-----KG-----------KELKVEDLTTF 59 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee------e-----CC-----------ceeEEeeCCHH
Confidence 58999998 999999999999988864 55544432211100 0 01 011111 1112
Q ss_pred cccCCCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCCcchhhhhhhccCcCceeecccccccCCCCe--EEEEeC
Q 010109 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL--LEIVRT 300 (518)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~l--veiv~g 300 (518)
.+.++|+||+|+|... -+++..++. ..++++++++|....+. . .| .++.-.|+-..... --++..
T Consensus 60 ~~~~vDvVf~A~g~g~--s~~~~~~~~---~~G~~VIDlS~~~R~~~-~----~p---~~lpevn~~~i~~~~~~~iVan 126 (334)
T PRK14874 60 DFSGVDIALFSAGGSV--SKKYAPKAA---AAGAVVIDNSSAFRMDP-D----VP---LVVPEVNPEALAEHRKKGIIAN 126 (334)
T ss_pred HHcCCCEEEECCChHH--HHHHHHHHH---hCCCEEEECCchhhcCC-C----CC---eEcCCcCHHHHhhhhcCCeEEC
Confidence 4578999999998653 344444443 35778888888764432 1 12 23322333221110 026666
Q ss_pred CCCcHHHHH-HHHHHHHhcCCcEEEe
Q 010109 301 NQTSPQVIV-DLLDIGKKIKKTPIVV 325 (518)
Q Consensus 301 ~~t~~e~~~-~~~~l~~~lGk~~v~v 325 (518)
+++....+. .+..+.+..+-..+.+
T Consensus 127 p~C~~t~~~l~l~pL~~~~~i~~i~v 152 (334)
T PRK14874 127 PNCSTIQMVVALKPLHDAAGIKRVVV 152 (334)
T ss_pred ccHHHHHHHHHHHHHHHhcCceEEEE
Confidence 655554443 3445555555444444
No 469
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=92.81 E-value=0.1 Score=54.56 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=30.7
Q ss_pred eEEEEEeCCcchHHHHHHHHhC--CCcEEEEeCCH
Q 010109 148 KKVAILGGGLMGSGIATALILS--NYPVILKEVNE 180 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~--G~~V~l~d~~~ 180 (518)
..|.|||+|.+|.++|..|++. |++|+++|+..
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 3799999999999999999998 99999999875
No 470
>PRK07538 hypothetical protein; Provisional
Probab=92.74 E-value=0.1 Score=54.97 Aligned_cols=34 Identities=32% Similarity=0.414 Sum_probs=31.9
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~ 181 (518)
++|.|||+|.-|...|..|+++|++|+++|++++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 4799999999999999999999999999999864
No 471
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=92.73 E-value=0.12 Score=53.40 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=29.9
Q ss_pred EEEEEeCCcchHHHHHHHHhCCCcEEEEeCCH
Q 010109 149 KVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (518)
Q Consensus 149 kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~ 180 (518)
.|.|||+|.+|.++|..|++.|++|+++|...
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 48999999999999999999999999999864
No 472
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.63 E-value=0.57 Score=49.58 Aligned_cols=101 Identities=14% Similarity=0.040 Sum_probs=59.8
Q ss_pred eEEEEEeC-CcchHHHHHHHHhC---CC----cEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc-
Q 010109 148 KKVAILGG-GLMGSGIATALILS---NY----PVILKEV--NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT- 216 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~---G~----~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~- 216 (518)
-+|.|-|+ |.+|-++...+++. |. .++|+|+ +.+.++.-.-.+.+..- ..+..+.
T Consensus 124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~--------------pll~~v~i 189 (452)
T cd05295 124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAF--------------PLLRGISV 189 (452)
T ss_pred eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHH--------------hhcCCcEE
Confidence 48999988 88888888888874 42 5788899 56665543322222211 1111122
Q ss_pred cccCcccccCCCEEEEeccc--------------ChHhHHHHHHHHhhhCCC-CcEEEEcC
Q 010109 217 GVLDYESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPP-HCILASNT 262 (518)
Q Consensus 217 ~~~~~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~-~~il~snt 262 (518)
.+.+++++++||+||.+.-- +..+-+.+...|.++.++ ..|++..|
T Consensus 190 ~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~t 250 (452)
T cd05295 190 TTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGR 250 (452)
T ss_pred EECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence 24568999999999987621 112333444557777663 44554433
No 473
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=92.61 E-value=0.11 Score=54.71 Aligned_cols=33 Identities=42% Similarity=0.627 Sum_probs=30.9
Q ss_pred EEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHH
Q 010109 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (518)
Q Consensus 149 kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~ 181 (518)
+|.|||+|..|...|..|++.|++|++++..+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 799999999999999999999999999997665
No 474
>PRK06940 short chain dehydrogenase; Provisional
Probab=92.59 E-value=0.23 Score=49.13 Aligned_cols=38 Identities=37% Similarity=0.545 Sum_probs=31.0
Q ss_pred eEE-EEEeCCcchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010109 148 KKV-AILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (518)
Q Consensus 148 ~kV-~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (518)
+|+ .|.|+|.+|..+|..|+ .|++|++.+++++.++..
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~ 40 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAA 40 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHH
Confidence 344 45588999999999996 799999999998776553
No 475
>PRK06475 salicylate hydroxylase; Provisional
Probab=92.57 E-value=0.1 Score=54.71 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=32.0
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~ 181 (518)
+||.|||+|.-|...|..|+++|++|.++|+.++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 5899999999999999999999999999998764
No 476
>PRK07825 short chain dehydrogenase; Provisional
Probab=92.53 E-value=0.27 Score=48.35 Aligned_cols=39 Identities=31% Similarity=0.357 Sum_probs=34.5
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010109 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (518)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++..
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~ 45 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKET 45 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 47888887 8999999999999999999999999877653
No 477
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=92.51 E-value=0.12 Score=54.10 Aligned_cols=35 Identities=37% Similarity=0.475 Sum_probs=31.5
Q ss_pred ceEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHH
Q 010109 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (518)
Q Consensus 147 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~ 181 (518)
+++|.|||+|..|...|..|++.|++|+++|..+.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 46899999999999999999999999999996443
No 478
>PRK07102 short chain dehydrogenase; Provisional
Probab=92.48 E-value=0.29 Score=47.09 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=34.7
Q ss_pred ceEEEEEeC-CcchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010109 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (518)
Q Consensus 147 ~~kV~VIGa-G~MG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (518)
+++|.|.|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~ 41 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERL 41 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHH
Confidence 357888986 9999999999999999999999998876543
No 479
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=92.41 E-value=0.2 Score=49.21 Aligned_cols=72 Identities=22% Similarity=0.267 Sum_probs=52.2
Q ss_pred eEEEEEeCCc-chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 010109 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~-MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (518)
+++.|||.+. .|..|+..|.+.++.|+++......+. +-+++
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~~l~-------------------------------------~~~k~ 199 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLA-------------------------------------SITKN 199 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCCCHH-------------------------------------HHhhh
Confidence 5899999975 599999999999999999875432221 23578
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCC
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (518)
+|+||.|+--..-+| .+.++++++++....
T Consensus 200 ADIvv~AvG~p~~i~-------~d~vk~gavVIDVGi 229 (283)
T COG0190 200 ADIVVVAVGKPHFIK-------ADMVKPGAVVIDVGI 229 (283)
T ss_pred CCEEEEecCCccccc-------cccccCCCEEEecCC
Confidence 999999994332233 345678888876543
No 480
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=92.39 E-value=0.27 Score=48.47 Aligned_cols=39 Identities=31% Similarity=0.428 Sum_probs=33.4
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010109 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (518)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++..
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 50 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAV 50 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 46777776 8999999999999999999999998766543
No 481
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.36 E-value=1.3 Score=47.30 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=30.8
Q ss_pred EEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHH
Q 010109 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (518)
Q Consensus 149 kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~ 181 (518)
||.|||.|..|.+.|..|++.|++|.++|.++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 799999999999999999999999999998754
No 482
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=92.33 E-value=0.28 Score=53.33 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=35.3
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 010109 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (518)
+.|.|.|+ |.+|..++..|++.|++|++++|+.+.++....
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~ 122 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQ 122 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 46888887 999999999999999999999999988765443
No 483
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.31 E-value=0.21 Score=48.64 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=28.9
Q ss_pred eEEEEEeCC---cchHHHHHHHHhCCCcEEEEeCCH
Q 010109 148 KKVAILGGG---LMGSGIATALILSNYPVILKEVNE 180 (518)
Q Consensus 148 ~kV~VIGaG---~MG~~iA~~la~~G~~V~l~d~~~ 180 (518)
+.+.|.|++ .+|.++|..|++.|++|++.+++.
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~ 43 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND 43 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch
Confidence 457777885 799999999999999999999984
No 484
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=92.30 E-value=0.4 Score=48.00 Aligned_cols=100 Identities=17% Similarity=0.089 Sum_probs=69.8
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (518)
+++||+|.|.+|+..|.++-.-|..|+.+|.- +.....+ .| +...+-.+.+..
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a-------------~g-------------vq~vsl~Eil~~ 200 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEA-------------FG-------------VQLVSLEEILPK 200 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHh-------------cc-------------ceeeeHHHHHhh
Confidence 68999999999999999998889999999864 3322221 22 112222245788
Q ss_pred CCEEEEecccChHhHHHHHHHHhhhCCCCcEEEEcCCC---cchhhhhhhc
Q 010109 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERT 274 (518)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~la~~~ 274 (518)
||+|-.=+|-.++.++-+-.+....|+.+.-|+ |+|- ++...+-.++
T Consensus 201 ADFitlH~PLtP~T~~lin~~tfA~mKkGVriI-N~aRGGvVDe~ALv~Al 250 (406)
T KOG0068|consen 201 ADFITLHVPLTPSTEKLLNDETFAKMKKGVRII-NVARGGVVDEPALVRAL 250 (406)
T ss_pred cCEEEEccCCCcchhhccCHHHHHHhhCCcEEE-EecCCceechHHHHHHH
Confidence 999999998888777666666777788887664 5553 3444555555
No 485
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=92.18 E-value=0.13 Score=53.68 Aligned_cols=33 Identities=36% Similarity=0.538 Sum_probs=31.1
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCH
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~ 180 (518)
..|.|||+|..|...|..|++.|++|+++|+.+
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 479999999999999999999999999999875
No 486
>PRK07074 short chain dehydrogenase; Provisional
Probab=92.18 E-value=0.21 Score=48.57 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=33.5
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 010109 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (518)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++.
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~ 41 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAA 41 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 46888887 899999999999999999999999877654
No 487
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=92.13 E-value=0.14 Score=53.44 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=31.9
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~ 181 (518)
.+|.|||+|..|...|..|+++|++|+++|+.++
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4799999999999999999999999999999874
No 488
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=92.07 E-value=0.15 Score=55.90 Aligned_cols=33 Identities=39% Similarity=0.617 Sum_probs=30.6
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCH
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~ 180 (518)
..|.|||+|.+|.++|..|++.|++|+++|.+.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d 39 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRGLRCILVERHD 39 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 469999999999999999999999999999853
No 489
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.04 E-value=0.34 Score=46.66 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=34.6
Q ss_pred eEEEEEeC-CcchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010109 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (518)
Q Consensus 148 ~kV~VIGa-G~MG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (518)
++|.|+|+ |.+|..++..|++.|++|++.+++++.++..
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~ 45 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERV 45 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 57899987 8999999999999999999999998776543
No 490
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=92.03 E-value=0.38 Score=56.10 Aligned_cols=163 Identities=13% Similarity=0.052 Sum_probs=83.2
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCC------cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--------
Q 010109 148 KKVAILGGGLMGSGIATALILSNY------PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTIS-------- 213 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~------~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~-------- 213 (518)
.||.|||+|..|+.++..|+..|+ +++++|.+.=.....-.++ +-+.-.-|+.....+.+.+.
T Consensus 420 ~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQf---Lf~~~dIGk~Ka~vaa~~l~~~Np~v~I 496 (1008)
T TIGR01408 420 LNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQF---LFRPHHIGKPKSYTAADATLKINPQIKI 496 (1008)
T ss_pred CcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCc---CCChhHcCcHHHHHHHHHHHHHCCCCEE
Confidence 589999999999999999999998 8999987532111100000 00000011111111111111
Q ss_pred -----cccccc-C---cccccCCCEEEEecccChHhHHHHHHHHhhhCCCCc-EEEEcCCCcchhhhhhhccCcCceeec
Q 010109 214 -----LLTGVL-D---YESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLIGERTYSKDRIVGA 283 (518)
Q Consensus 214 -----~i~~~~-~---~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~-il~sntS~l~i~~la~~~~~~~r~ig~ 283 (518)
++...+ + .+-+++.|+||.|+- +.+.+.-+-..... .+. +|-+.+.+.. ....-..++-....+.
T Consensus 497 ~~~~~~v~~~~e~i~~~~f~~~~dvVi~alD-n~~aR~~vn~~c~~---~~iPli~~gt~G~~-G~v~v~ip~~te~y~~ 571 (1008)
T TIGR01408 497 DAHQNRVGPETETIFNDEFYEKLDVVINALD-NVEARRYVDSRCLA---FLKPLLESGTLGTK-GNTQVVVPHLTESYGS 571 (1008)
T ss_pred EEEEeecChhhhhhhhHHHhhCCCEEEECCC-CHHHHHHHHHHHHH---cCCCEEEEeccCce-eeEEEEeCCCcCCCCC
Confidence 111100 1 112578999999873 44444322222222 233 3333333321 1111111121223344
Q ss_pred ccccccCCCCeEEEEeCCCCcHHHHHHHHHHHHhc
Q 010109 284 HFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKI 318 (518)
Q Consensus 284 hf~~P~~~~~lveiv~g~~t~~e~~~~~~~l~~~l 318 (518)
|.-.|....|++++-..+..-.-.++.+++++..+
T Consensus 572 ~~d~~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~~~ 606 (1008)
T TIGR01408 572 SRDPPEKEIPFCTLKSFPAAIEHTIQWARDKFEGL 606 (1008)
T ss_pred CCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHH
Confidence 44334345688888888888888999999988774
No 491
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=92.02 E-value=0.15 Score=53.24 Aligned_cols=32 Identities=38% Similarity=0.416 Sum_probs=30.9
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN 179 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~ 179 (518)
..|.|||+|..|..+|..|+++|++|+++|+.
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 57999999999999999999999999999998
No 492
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.02 E-value=1.3 Score=43.87 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=33.5
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCc-EEEEeCCHHHHHHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAG 186 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~-V~l~d~~~~~~~~~ 186 (518)
.+|.|+|+|.+|...++.+...|.. |++.|+++++++.+
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a 161 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELA 161 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 3799999999999999888888987 88889998877654
No 493
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=91.98 E-value=0.15 Score=52.95 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=30.3
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCC
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN 179 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~ 179 (518)
.+|.|||+|..|...|..|++.|++|+++|..
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 57999999999999999999999999999975
No 494
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=91.98 E-value=0.13 Score=53.31 Aligned_cols=32 Identities=34% Similarity=0.573 Sum_probs=30.6
Q ss_pred EEEEeCCcchHHHHHHHHhCCCcEEEEeCCHH
Q 010109 150 VAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (518)
Q Consensus 150 V~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~ 181 (518)
|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 89999999999999999999999999999875
No 495
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.92 E-value=0.77 Score=48.87 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=31.6
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~ 181 (518)
++|.|+|.|..|.++|..|++.|++|+++|.++.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 5899999999999999999999999999998764
No 496
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=91.90 E-value=0.15 Score=53.02 Aligned_cols=32 Identities=41% Similarity=0.556 Sum_probs=30.1
Q ss_pred eEEEEEeCCcchHHHHHHHHhC---CCcEEEEeCC
Q 010109 148 KKVAILGGGLMGSGIATALILS---NYPVILKEVN 179 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~---G~~V~l~d~~ 179 (518)
.+|.|||+|..|...|..|+++ |++|+++|+.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 4799999999999999999998 9999999994
No 497
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=91.87 E-value=0.16 Score=53.85 Aligned_cols=34 Identities=38% Similarity=0.525 Sum_probs=31.8
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~ 181 (518)
+||+|+|+|.-|-+-|+.|+++||+|++|+..+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~ 34 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDR 34 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCc
Confidence 5899999999999999999999999999998764
No 498
>PRK08013 oxidoreductase; Provisional
Probab=91.84 E-value=0.13 Score=53.98 Aligned_cols=34 Identities=32% Similarity=0.407 Sum_probs=31.7
Q ss_pred eEEEEEeCCcchHHHHHHHHhCCCcEEEEeCCHH
Q 010109 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (518)
Q Consensus 148 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~d~~~~ 181 (518)
..|.|||+|..|...|..|++.|++|+++|+.++
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 3699999999999999999999999999999865
No 499
>PRK07831 short chain dehydrogenase; Provisional
Probab=91.84 E-value=0.38 Score=46.93 Aligned_cols=41 Identities=22% Similarity=0.316 Sum_probs=35.3
Q ss_pred eEEEEEeC-C-cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 010109 148 KKVAILGG-G-LMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (518)
Q Consensus 148 ~kV~VIGa-G-~MG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (518)
+++.|.|+ | .+|..++..|+..|++|++.|++++.++...+
T Consensus 18 k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~ 60 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETAD 60 (262)
T ss_pred CEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 67889997 6 69999999999999999999999887766443
No 500
>PRK08267 short chain dehydrogenase; Provisional
Probab=91.80 E-value=0.35 Score=47.10 Aligned_cols=40 Identities=25% Similarity=0.245 Sum_probs=34.8
Q ss_pred ceEEEEEeC-CcchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010109 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (518)
Q Consensus 147 ~~kV~VIGa-G~MG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (518)
|++|.|+|+ |.+|..++..|++.|++|++.+++++.++..
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 41 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAAL 41 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 357888986 8999999999999999999999998876653
Done!