Query 010110
Match_columns 518
No_of_seqs 48 out of 50
Neff 3.1
Searched_HMMs 46136
Date Thu Mar 28 21:10:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11637 AmiB activator; Provi 77.3 42 0.00091 35.5 12.8 78 54-131 45-135 (428)
2 PLN03144 Carbon catabolite rep 73.4 3.5 7.6E-05 46.4 3.9 32 352-383 174-205 (606)
3 PF14988 DUF4515: Domain of un 68.7 23 0.00049 34.9 7.9 76 59-134 81-174 (206)
4 PF10186 Atg14: UV radiation r 68.5 67 0.0014 31.2 11.0 90 57-147 28-125 (302)
5 PF12128 DUF3584: Protein of u 63.1 1.3E+02 0.0029 36.4 14.1 106 57-163 789-894 (1201)
6 PF04012 PspA_IM30: PspA/IM30 62.6 42 0.0009 32.2 8.2 117 44-191 19-139 (221)
7 PRK09039 hypothetical protein; 58.4 76 0.0016 33.3 9.9 122 58-191 48-171 (343)
8 COG1704 LemA Uncharacterized c 57.2 23 0.0005 35.0 5.5 47 133-191 91-138 (185)
9 PF03961 DUF342: Protein of un 56.6 18 0.00038 38.7 5.1 84 301-424 117-200 (451)
10 PRK10698 phage shock protein P 55.4 90 0.0019 30.9 9.3 77 45-126 21-102 (222)
11 TIGR03185 DNA_S_dndD DNA sulfu 54.5 61 0.0013 36.3 8.9 59 51-109 393-453 (650)
12 TIGR01005 eps_transp_fam exopo 51.8 1.3E+02 0.0027 34.2 10.9 109 62-170 200-329 (754)
13 KOG0977 Nuclear envelope prote 51.4 84 0.0018 35.7 9.3 40 62-101 41-80 (546)
14 TIGR02977 phageshock_pspA phag 50.0 1.5E+02 0.0033 28.9 9.9 54 44-106 20-74 (219)
15 PRK09239 chorismate mutase; Pr 47.4 2.1E+02 0.0045 25.5 9.9 94 88-191 7-100 (104)
16 PRK14153 heat shock protein Gr 47.2 2.1E+02 0.0045 28.5 10.3 65 139-211 82-150 (194)
17 COG2900 SlyX Uncharacterized p 45.7 43 0.00094 28.8 4.7 37 86-125 3-41 (72)
18 PF15294 Leu_zip: Leucine zipp 42.0 2.6E+02 0.0057 29.4 10.6 41 58-98 134-174 (278)
19 CHL00140 rpl6 ribosomal protei 40.4 46 0.00099 32.0 4.6 53 429-482 80-138 (178)
20 KOG0978 E3 ubiquitin ligase in 40.1 2.5E+02 0.0053 33.0 10.9 109 80-191 499-621 (698)
21 PF11464 Rbsn: Rabenosyn Rab b 39.8 67 0.0015 25.1 4.5 40 63-104 3-42 (42)
22 KOG0250 DNA repair protein RAD 39.5 3.6E+02 0.0078 33.2 12.4 139 49-191 734-891 (1074)
23 COG1579 Zn-ribbon protein, pos 39.4 1.7E+02 0.0037 29.9 8.7 92 61-161 36-128 (239)
24 PRK14148 heat shock protein Gr 38.7 3.4E+02 0.0073 27.0 10.3 64 139-210 89-156 (195)
25 KOG3091 Nuclear pore complex, 38.0 81 0.0017 35.5 6.5 80 47-128 346-446 (508)
26 COG4942 Membrane-bound metallo 37.1 6.3E+02 0.014 28.1 12.9 92 59-158 41-132 (420)
27 PRK14154 heat shock protein Gr 36.9 3.7E+02 0.0079 27.1 10.3 152 19-211 11-171 (208)
28 KOG1222 Kinesin associated pro 35.8 1.5E+02 0.0033 34.0 8.2 128 23-178 231-359 (791)
29 PRK10361 DNA recombination pro 35.6 3.8E+02 0.0082 30.1 11.1 57 59-116 56-112 (475)
30 PF01895 PhoU: PhoU domain; I 35.3 1.3E+02 0.0029 23.3 5.8 50 52-101 24-73 (88)
31 PF10186 Atg14: UV radiation r 35.2 4E+02 0.0086 25.9 10.2 51 57-107 57-107 (302)
32 TIGR03185 DNA_S_dndD DNA sulfu 35.2 1.3E+02 0.0028 33.8 7.7 58 399-459 585-649 (650)
33 PLN02939 transferase, transfer 34.7 2.7E+02 0.0058 33.9 10.4 100 50-153 129-280 (977)
34 PRK02119 hypothetical protein; 33.6 93 0.002 26.2 4.9 37 84-123 2-40 (73)
35 PRK02793 phi X174 lysis protei 33.1 98 0.0021 25.9 4.9 33 88-123 5-39 (72)
36 PRK14162 heat shock protein Gr 32.3 4.9E+02 0.011 25.8 10.3 64 140-211 89-156 (194)
37 PRK14154 heat shock protein Gr 32.0 2.4E+02 0.0052 28.4 8.2 27 47-73 50-76 (208)
38 PRK11020 hypothetical protein; 31.3 75 0.0016 29.7 4.2 40 67-109 16-60 (118)
39 TIGR01795 CM_mono_cladeE monof 31.1 3.6E+02 0.0078 23.6 8.3 84 91-187 3-89 (94)
40 PF04156 IncA: IncA protein; 30.7 2.7E+02 0.0059 25.9 8.0 27 162-188 156-182 (191)
41 PF09726 Macoilin: Transmembra 29.4 2.4E+02 0.0052 32.8 8.8 67 54-127 543-611 (697)
42 TIGR02169 SMC_prok_A chromosom 29.3 4.6E+02 0.01 30.4 11.0 17 399-415 606-622 (1164)
43 PF14389 Lzipper-MIP1: Leucine 29.2 77 0.0017 27.4 3.8 36 43-78 48-83 (88)
44 PRK14139 heat shock protein Gr 29.2 4.4E+02 0.0094 26.0 9.3 64 140-211 82-147 (185)
45 PF14048 MBD_C: C-terminal dom 28.7 41 0.00089 29.8 2.1 20 56-75 76-95 (96)
46 PRK00295 hypothetical protein; 28.3 1.3E+02 0.0029 24.9 4.9 31 89-122 3-35 (68)
47 PF11932 DUF3450: Protein of u 28.1 5.7E+02 0.012 25.3 10.1 84 68-152 40-127 (251)
48 PF07989 Microtub_assoc: Micro 27.9 1.4E+02 0.003 25.4 5.0 63 58-144 2-64 (75)
49 PF01025 GrpE: GrpE; InterPro 27.9 2.4E+02 0.0052 25.8 7.0 53 137-191 58-114 (165)
50 COG1196 Smc Chromosome segrega 27.7 4.5E+02 0.0098 31.9 10.9 138 48-189 361-499 (1163)
51 PRK09293 fructose-1,6-bisphosp 27.6 96 0.0021 32.7 4.9 77 319-414 145-222 (327)
52 PRK06342 transcription elongat 27.3 82 0.0018 30.0 4.0 42 51-97 32-77 (160)
53 PRK14149 heat shock protein Gr 26.7 3.7E+02 0.0081 26.7 8.4 64 139-211 85-152 (191)
54 PF04849 HAP1_N: HAP1 N-termin 26.7 1.4E+02 0.003 31.7 5.8 48 59-106 230-277 (306)
55 PF00038 Filament: Intermediat 26.3 1.9E+02 0.0042 28.8 6.5 50 58-107 211-260 (312)
56 PLN02542 fructose-1,6-bisphosp 25.9 1.1E+02 0.0023 33.7 5.0 80 319-416 234-314 (412)
57 PRK04406 hypothetical protein; 25.7 1.6E+02 0.0035 25.0 5.0 32 88-122 8-41 (75)
58 cd01246 PH_oxysterol_bp Oxyste 25.5 3.4E+02 0.0073 21.4 8.2 76 428-503 11-89 (91)
59 COG1579 Zn-ribbon protein, pos 25.1 3.5E+02 0.0077 27.8 8.2 47 56-102 59-114 (239)
60 cd05829 Sortase_E Sortase E (S 25.0 1.9E+02 0.004 26.6 5.7 52 315-366 41-96 (144)
61 PF04012 PspA_IM30: PspA/IM30 25.0 1.3E+02 0.0028 28.9 4.9 48 51-98 86-133 (221)
62 PRK11281 hypothetical protein; 24.7 3.7E+02 0.0079 33.2 9.4 71 88-158 357-459 (1113)
63 PRK05498 rplF 50S ribosomal pr 24.4 1.4E+02 0.0029 28.7 4.9 53 429-482 80-138 (178)
64 cd01253 PH_beta_spectrin Beta- 24.4 3.1E+02 0.0067 22.9 6.5 76 428-503 19-102 (104)
65 PRK14160 heat shock protein Gr 24.2 6.1E+02 0.013 25.6 9.4 63 139-211 110-174 (211)
66 PRK14151 heat shock protein Gr 24.0 6.8E+02 0.015 24.4 9.6 64 140-211 70-138 (176)
67 PRK11281 hypothetical protein; 23.8 2.1E+02 0.0046 35.0 7.3 61 49-110 66-147 (1113)
68 KOG3083 Prohibitin [Posttransl 23.3 75 0.0016 32.9 3.1 41 103-143 141-199 (271)
69 PF08838 DUF1811: Protein of u 22.8 86 0.0019 28.6 3.0 33 60-94 11-43 (102)
70 TIGR01076 sortase_fam LPXTG-si 22.7 81 0.0017 28.4 2.9 51 314-365 30-85 (136)
71 PRK14141 heat shock protein Gr 21.8 8.1E+02 0.017 24.7 9.8 64 139-210 80-153 (209)
72 PF07926 TPR_MLP1_2: TPR/MLP1/ 21.7 5.2E+02 0.011 23.4 7.8 67 62-128 58-124 (132)
73 KOG3990 Uncharacterized conser 21.6 2.8E+02 0.0061 29.3 6.7 29 46-74 215-243 (305)
74 PRK04325 hypothetical protein; 21.6 2.1E+02 0.0046 24.1 4.9 32 89-123 7-40 (74)
75 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 21.5 78 0.0017 30.6 2.7 119 378-502 46-195 (195)
76 PRK14143 heat shock protein Gr 21.4 8.8E+02 0.019 24.8 10.1 63 139-209 116-183 (238)
77 TIGR03654 L6_bact ribosomal pr 21.4 1.7E+02 0.0036 28.1 4.8 53 429-482 79-137 (175)
78 PF04201 TPD52: Tumour protein 21.3 2E+02 0.0043 28.2 5.3 107 44-190 24-137 (162)
79 PF06034 DUF919: Nucleopolyhed 21.2 1.9E+02 0.0041 24.3 4.4 43 58-100 6-54 (62)
80 PF13600 DUF4140: N-terminal d 20.8 1.3E+02 0.0029 25.6 3.7 36 61-96 68-103 (104)
81 cd00354 FBPase Fructose-1,6-bi 20.6 1.5E+02 0.0032 31.1 4.7 79 319-415 138-217 (315)
82 KOG2896 UV radiation resistanc 20.6 3.5E+02 0.0076 29.7 7.4 44 92-135 142-192 (377)
83 PF13874 Nup54: Nucleoporin co 20.3 4.4E+02 0.0096 24.2 7.2 79 52-140 33-113 (141)
84 TIGR02168 SMC_prok_B chromosom 20.2 1.1E+03 0.025 27.1 11.8 8 310-317 1071-1078(1179)
85 PF00038 Filament: Intermediat 20.2 3.6E+02 0.0079 26.9 7.1 43 62-104 53-95 (312)
86 TIGR03784 marine_sortase sorta 20.1 1.4E+02 0.0031 28.7 4.1 38 323-365 92-131 (174)
87 PRK02224 chromosome segregatio 20.0 8.9E+02 0.019 27.9 10.9 33 478-510 770-802 (880)
No 1
>PRK11637 AmiB activator; Provisional
Probab=77.32 E-value=42 Score=35.51 Aligned_cols=78 Identities=15% Similarity=0.159 Sum_probs=47.1
Q ss_pred HHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhHH-------------HHHHHHHHHHhhh
Q 010110 54 LYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEA-------------ITSALNELARRKG 120 (518)
Q Consensus 54 l~~~~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~A~DqqQqdl-------------vdaAsKaLsyRq~ 120 (518)
+-.+.++.+++|.++.+.|.+..-+..++.++...|+++|+.+.-.++..|+++ |+.+-+.|..+++
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666666666666667777777777766666665555443 2333445555566
Q ss_pred hHhhhhhhhhh
Q 010110 121 VLEENLKLAHD 131 (518)
Q Consensus 121 iiEENiRLtya 131 (518)
.+.+=+|-.|.
T Consensus 125 ~l~~rlra~Y~ 135 (428)
T PRK11637 125 LLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHH
Confidence 66666666665
No 2
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=73.35 E-value=3.5 Score=46.44 Aligned_cols=32 Identities=34% Similarity=0.632 Sum_probs=27.7
Q ss_pred eecCCCCCceeeeccccCceEEEEEEecCCCC
Q 010110 352 YIEGATNPEYVVTADDVDKLIAVECIPMDDQG 383 (518)
Q Consensus 352 ~IeGA~~p~Y~vTADDVd~liAvec~PmDd~g 383 (518)
.|+=..+..|+.|+||||-.|-+||+|+|...
T Consensus 174 w~~vg~~~~y~p~~~d~g~~lk~~~~~~~~~~ 205 (606)
T PLN03144 174 WIEVGRSKTYTPTADDVGHVLKFECVVVDAET 205 (606)
T ss_pred eEEeCCCccccCChhhCCceEEEEEEEccccc
Confidence 35555788999999999999999999998764
No 3
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=68.72 E-value=23 Score=34.89 Aligned_cols=76 Identities=26% Similarity=0.328 Sum_probs=52.4
Q ss_pred hccHHHHHHHHHHHHHH----hh----hhhhhhcchhhhHHHHhHHHHHH---------hHHhhHHHHHHHHHHH-Hhhh
Q 010110 59 RMQKEEIHSLRQQIAVA----CL----KELQLQNEKYTLERKVSELRMAI---------DEKQNEAITSALNELA-RRKG 120 (518)
Q Consensus 59 r~~eeeI~~Lrk~Lad~----s~----Ke~Qll~EK~vLErriA~mR~A~---------DqqQqdlvdaAsKaLs-yRq~ 120 (518)
..+|.||..|++.++.. +. =+.|.+.||.-||+-..+++++- .++=|-|.-||-++|. +=++
T Consensus 81 ~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~ 160 (206)
T PF14988_consen 81 EQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELKILQLGERAHKELKKKAQALELAAKKSLDEFTRS 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788998888887652 22 25789999999999887777651 2233334444555443 5678
Q ss_pred hHhhhhhhhhhhhh
Q 010110 121 VLEENLKLAHDLKV 134 (518)
Q Consensus 121 iiEENiRLtyalq~ 134 (518)
|..||.+|.-+|.-
T Consensus 161 i~~EN~~L~k~L~~ 174 (206)
T PF14988_consen 161 IKRENQQLRKELLQ 174 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877654
No 4
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=68.54 E-value=67 Score=31.17 Aligned_cols=90 Identities=18% Similarity=0.146 Sum_probs=49.8
Q ss_pred HhhccHHHHHHHHHHHHHHhh--------hhhhhhcchhhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhh
Q 010110 57 RARMQKEEIHSLRQQIAVACL--------KELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKL 128 (518)
Q Consensus 57 ~~r~~eeeI~~Lrk~Lad~s~--------Ke~Qll~EK~vLErriA~mR~A~DqqQqdlvdaAsKaLsyRq~iiEENiRL 128 (518)
+...-.++...|+.++.++-- .-.++..|...++.|++.+|....++++.+-+.=-+.-..|+.+-...-.|
T Consensus 28 ~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 28 ELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666433 334556677778888888888887776665444333333334443334444
Q ss_pred hhhhhhhhhhhHHHHHHHH
Q 010110 129 AHDLKVAEDERYFFMSSML 147 (518)
Q Consensus 129 tyalq~aeqERs~fvssLL 147 (518)
. +.+...+++..++..+.
T Consensus 108 ~-~~~~~~~~~~~~~~~~~ 125 (302)
T PF10186_consen 108 S-ASQDLVESRQEQLEELQ 125 (302)
T ss_pred H-HHHHHHHHHHHHHHHHH
Confidence 4 44444455555554443
No 5
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=63.13 E-value=1.3e+02 Score=36.39 Aligned_cols=106 Identities=23% Similarity=0.260 Sum_probs=68.3
Q ss_pred HhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhh
Q 010110 57 RARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAE 136 (518)
Q Consensus 57 ~~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~A~DqqQqdlvdaAsKaLsyRq~iiEENiRLtyalq~ae 136 (518)
+++.++.++..-++-+...=.+.-.+..+|-.|+.+++.++-++.+.++++-.. .+++..+..=+|+.+.-.-+.+..-
T Consensus 789 ~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~le~~~~~~~~~~~~~ 867 (1201)
T PF12128_consen 789 RIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQL-QKEVKQRRKELEEELKALEEQLEQL 867 (1201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444555677788888888888888888777776543 4455555566666666555555544
Q ss_pred hhhHHHHHHHHHHhhhcCCCCCcccch
Q 010110 137 DERYFFMSSMLGLLADYGLWPHVTNAS 163 (518)
Q Consensus 137 qERs~fvssLLpLLaEY~lqP~v~dAq 163 (518)
++.-.-+..++.-|+++.+.|+..+|+
T Consensus 868 ~~~l~~l~~~~~~l~~~~~~~~~~~~~ 894 (1201)
T PF12128_consen 868 EEQLRRLRDLLEKLAELSEPPNAEDAE 894 (1201)
T ss_pred HHHHHHHHHHHhhhhhcCCCCCchhhh
Confidence 555555666666678888888888888
No 6
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=62.61 E-value=42 Score=32.16 Aligned_cols=117 Identities=18% Similarity=0.239 Sum_probs=72.7
Q ss_pred ccccchhhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHH----HHHHhHHhhHHHHHHHHHHHHhh
Q 010110 44 ISFQDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSEL----RMAIDEKQNEAITSALNELARRK 119 (518)
Q Consensus 44 ~~~~d~~~~~l~~~~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~m----R~A~DqqQqdlvdaAsKaLsyRq 119 (518)
..+.||+ .-|=.-+|+-+++|..+|+.+|.+...+.++-.+...+++.++.+ +.|...-..||.-.| |..++
T Consensus 19 d~~EDP~-~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~a---l~~k~ 94 (221)
T PF04012_consen 19 DKAEDPE-KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREA---LQRKA 94 (221)
T ss_pred HhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH---HHHHH
Confidence 3467888 445557899999999999999998887777666666666655543 456665555554332 22222
Q ss_pred hhHhhhhhhhhhhhhhhhhhHHHHHHHHHHhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccc
Q 010110 120 GVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (518)
Q Consensus 120 ~iiEENiRLtyalq~aeqERs~fvssLLpLLaEY~lqP~v~dAqSIvs~vKvL~~~Lq~kl~~~e~klke~~ 191 (518)
+.-+ +. .. |+..+..+...|..+|.-++.|..+|..+..+...+.
T Consensus 95 ~~e~--------------~~----~~---------l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 95 DLEE--------------QA----ER---------LEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HHHH--------------HH----HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 00 01 1223345566777888888888888877777655443
No 7
>PRK09039 hypothetical protein; Validated
Probab=58.36 E-value=76 Score=33.34 Aligned_cols=122 Identities=14% Similarity=0.064 Sum_probs=65.1
Q ss_pred hhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhh-hhhhh
Q 010110 58 ARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHD-LKVAE 136 (518)
Q Consensus 58 ~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~A~DqqQqdlvdaAsKaLsyRq~iiEENiRLtya-lq~ae 136 (518)
+...++|+..|..+|++.+.--.==.+....|+.+|+.||--|+.-+. +.+-+|.-+--.++ ...++
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~------------~r~~Le~~~~~~~~~~~~~~ 115 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEA------------ERSRLQALLAELAGAGAAAE 115 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH------------HHHHHHHHHhhhhhhcchHH
Confidence 456788999999999885432222234456677777777776662111 11122221110111 00011
Q ss_pred hhhHHHHHHHHHHhhhc-CCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccc
Q 010110 137 DERYFFMSSMLGLLADY-GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (518)
Q Consensus 137 qERs~fvssLLpLLaEY-~lqP~v~dAqSIvs~vKvL~~~Lq~kl~~~e~klke~~ 191 (518)
..-...-.-|=-+.++| .-+|.|.-.++=+..+|.=-..|+..|...+.+.++.+
T Consensus 116 ~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~ 171 (343)
T PRK09039 116 GRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQ 171 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111123344455666 47777777777777777766667777666666655555
No 8
>COG1704 LemA Uncharacterized conserved protein [Function unknown]
Probab=57.20 E-value=23 Score=35.02 Aligned_cols=47 Identities=21% Similarity=0.250 Sum_probs=40.1
Q ss_pred hhhhhhhHHHHHHHHHHhhhc-CCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccc
Q 010110 133 KVAEDERYFFMSSMLGLLADY-GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (518)
Q Consensus 133 q~aeqERs~fvssLLpLLaEY-~lqP~v~dAqSIvs~vKvL~~~Lq~kl~~~e~klke~~ 191 (518)
|.||.|.+-+.+.|+=+-.-| +|.-. ..|..||++|..+|.++.-+.
T Consensus 91 ~~aq~~Ls~~L~rl~a~~E~YPdLKAn------------~~f~~Lq~ql~~tEn~Ia~aR 138 (185)
T COG1704 91 QEAQAELSSALGRLFAVAEAYPDLKAN------------ENFLELQSQLEGTENRIAVAR 138 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhh------------hHHHHHHHHHHhHHHHHHHHH
Confidence 788899999999999988889 76543 469999999999999987666
No 9
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=56.64 E-value=18 Score=38.66 Aligned_cols=84 Identities=24% Similarity=0.273 Sum_probs=51.3
Q ss_pred ccCCCCCCcccceeecccCCCcceeeeccccCCceeeeeEEEEEccCCceeeecCCCCCceeeeccccCceEEEEEEecC
Q 010110 301 SISEGGPGIEGFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMD 380 (518)
Q Consensus 301 ad~dplPgiegl~I~Gda~pG~~L~acG~~inGTtlC~FQWvRhleDGt~~~IeGA~~p~Y~vTADDVd~liAvec~PmD 380 (518)
.--.|.||.+|..+.|+.+|...-.-.-+++ ++.-.+..+|=.+++|
T Consensus 117 ~~~p~~~G~~G~~V~G~~I~~~~~~~~~~~~--------------------------g~~~~~~~~d~~~~~A------- 163 (451)
T PF03961_consen 117 EKIPPTPGEPGRDVFGEPIPAKPGKDIPLKA--------------------------GKNTEVSEEDGNKLYA------- 163 (451)
T ss_pred EEccCCCCCCCcccCCCCcCCCCCCccceeC--------------------------CCCEEEEcCCCCEEEE-------
Confidence 4445789999999999999876543221111 1333344344444443
Q ss_pred CCCCccceeeeecccCCccccCccchHHHHHHHHhcceEEEEEe
Q 010110 381 DQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLM 424 (518)
Q Consensus 381 d~grkGElVk~~aNd~~kI~cDpeMq~~I~~~l~~G~Asf~V~l 424 (518)
...|-++. +++.|..+|.+.=. +--+++|+..|.=.+
T Consensus 164 --~~~G~~~~----~~~~i~V~~~l~i~-dVd~~TGnI~f~G~V 200 (451)
T PF03961_consen 164 --AIDGRPVF----ENGKISVDPVLEIN-DVDYSTGNIDFDGDV 200 (451)
T ss_pred --ecCCEEEE----ECCEEEEEEeeEeC-CCCCCCCCEeeeEEE
Confidence 23444444 45557777777766 777888999986433
No 10
>PRK10698 phage shock protein PspA; Provisional
Probab=55.38 E-value=90 Score=30.93 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=47.0
Q ss_pred cccchh-hhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHH----HHHHhHHhhHHHHHHHHHHHHhh
Q 010110 45 SFQDRE-AMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSEL----RMAIDEKQNEAITSALNELARRK 119 (518)
Q Consensus 45 ~~~d~~-~~~l~~~~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~m----R~A~DqqQqdlvdaAsKaLsyRq 119 (518)
...||+ ..++ -+++-++.+..+|+-+|.+-..+.++-.+...++.++++. ++|...-..|| |-+||..++
T Consensus 21 kaEDP~k~l~q--~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdL---Ar~AL~~K~ 95 (222)
T PRK10698 21 KAEDPQKLVRL--MIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDL---ARAALIEKQ 95 (222)
T ss_pred hhcCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHH
Confidence 457998 5565 4788899999999999887666544444444444433332 44554444444 456677777
Q ss_pred hhHhhhh
Q 010110 120 GVLEENL 126 (518)
Q Consensus 120 ~iiEENi 126 (518)
..-+.-=
T Consensus 96 ~~~~~~~ 102 (222)
T PRK10698 96 KLTDLIA 102 (222)
T ss_pred HHHHHHH
Confidence 6654433
No 11
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=54.51 E-value=61 Score=36.28 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=46.6
Q ss_pred hhhHHHHhhccHHHHHHHHHHHHHHhhhh--hhhhcchhhhHHHHhHHHHHHhHHhhHHHH
Q 010110 51 AMELYSRARMQKEEIHSLRQQIAVACLKE--LQLQNEKYTLERKVSELRMAIDEKQNEAIT 109 (518)
Q Consensus 51 ~~~l~~~~r~~eeeI~~Lrk~Lad~s~Ke--~Qll~EK~vLErriA~mR~A~DqqQqdlvd 109 (518)
...|..+.++.|+||..|.++|+.+.-+| .++..++..++++++.++-.+...++.+-.
T Consensus 393 ~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~ 453 (650)
T TIGR03185 393 KSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLET 453 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667788999999999999875533 356677888999999999999998887753
No 12
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=51.83 E-value=1.3e+02 Score=34.15 Aligned_cols=109 Identities=13% Similarity=0.113 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcc--------hhhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhh--h-----
Q 010110 62 KEEIHSLRQQIAVACLKELQLQNE--------KYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEEN--L----- 126 (518)
Q Consensus 62 eeeI~~Lrk~Lad~s~Ke~Qll~E--------K~vLErriA~mR~A~DqqQqdlvdaAsKaLsyRq~iiEEN--i----- 126 (518)
+++|..||++|.++-.+=.+...+ .-+.+.+++++.-..-.-|.++++|.++.-..|..+-.-+ .
T Consensus 200 ~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~ 279 (754)
T TIGR01005 200 APEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEV 279 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhh
Confidence 455667777776664443333221 1134588888887777777777776666555443332111 0
Q ss_pred -----hhhhhhhhhhhhhHHHHHHHHHHhhhc-CCCCCcccchhhhhhHH
Q 010110 127 -----KLAHDLKVAEDERYFFMSSMLGLLADY-GLWPHVTNASAISNTVK 170 (518)
Q Consensus 127 -----RLtyalq~aeqERs~fvssLLpLLaEY-~lqP~v~dAqSIvs~vK 170 (518)
.+.=.++...++....-+-+--|...| .-+|.|.+++.=+..++
T Consensus 280 ~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~ 329 (754)
T TIGR01005 280 LSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLD 329 (754)
T ss_pred hcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence 000112222333333344444566778 77888877544444443
No 13
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=51.40 E-value=84 Score=35.66 Aligned_cols=40 Identities=28% Similarity=0.356 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHh
Q 010110 62 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAID 101 (518)
Q Consensus 62 eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~A~D 101 (518)
++||.+|=.|||+|.=|=-+|=.|.+.||-.|-.+|-+|-
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~ 80 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVG 80 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4789999999999999999999999999999998887664
No 14
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=50.00 E-value=1.5e+02 Score=28.86 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=35.8
Q ss_pred ccccchh-hhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhH
Q 010110 44 ISFQDRE-AMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNE 106 (518)
Q Consensus 44 ~~~~d~~-~~~l~~~~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~A~DqqQqd 106 (518)
....||+ ..+. -+|+-++.|...|+-||.+...+ ..|||+++.++...+..++.
T Consensus 20 dk~EDP~~~l~q--~irem~~~l~~ar~~lA~~~a~~-------k~~e~~~~~~~~~~~~~~~~ 74 (219)
T TIGR02977 20 DKAEDPEKMIRL--IIQEMEDTLVEVRTTSARTIADK-------KELERRVSRLEAQVADWQEK 74 (219)
T ss_pred HhccCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3457898 5555 46888889999999998876654 45566665555444444433
No 15
>PRK09239 chorismate mutase; Provisional
Probab=47.43 E-value=2.1e+02 Score=25.52 Aligned_cols=94 Identities=15% Similarity=0.142 Sum_probs=58.1
Q ss_pred hhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHHHHHHHHHHhhhcCCCCCcccchhhhh
Q 010110 88 TLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISN 167 (518)
Q Consensus 88 vLErriA~mR~A~DqqQqdlvdaAsKaLsyRq~iiEENiRLtyalq~aeqERs~fvssLLpLLaEY~lqP~v~dAqSIvs 167 (518)
-+...+.++|-.+|+-=..||+.-+|-+.+=+.|.+-...-...+-..++|... +..+--+.++++|.|.+
T Consensus 7 ~~~~~L~~lR~~ID~ID~eIv~LLa~R~~l~~~Ia~~K~~~~~~i~dp~RE~~v-l~~~~~~a~~~gl~p~~-------- 77 (104)
T PRK09239 7 RAPAELAALRQSIDNIDAALIHMLAERFKCTQAVGVLKAEHGLPPADPAREAYQ-IERLRQLAKDANLDPDF-------- 77 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH-HHHHHHHHHHCCCCHHH--------
Confidence 344557777777777666777654444444444433333222223334444433 35566777889999974
Q ss_pred hHHHHHHHHHHHHHhhhhhhcccc
Q 010110 168 TVKHLYDQLQSQIRTSYDRIRDLT 191 (518)
Q Consensus 168 ~vKvL~~~Lq~kl~~~e~klke~~ 191 (518)
++.+|+.+-+.....++++...+
T Consensus 78 -~~~i~~~ii~esir~q~~i~~~~ 100 (104)
T PRK09239 78 -AEKFLNFIIKEVIRHHERIAAEH 100 (104)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcc
Confidence 47889999888888888776655
No 16
>PRK14153 heat shock protein GrpE; Provisional
Probab=47.18 E-value=2.1e+02 Score=28.46 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHhhhc--CCC--CCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 010110 139 RYFFMSSMLGLLADY--GLW--PHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 211 (518)
Q Consensus 139 Rs~fvssLLpLLaEY--~lq--P~v~dAqSIvs~vKvL~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~q~p 211 (518)
...|+..|||.+-.+ -|. +.-.+..+|+.+|+..+++|..-|. ...|+++. ..| ..++|+.|+..
T Consensus 82 ~~~~~~~LLpv~DnLerAl~~~~~~~~~~~l~~Gvemi~k~~~~vL~--k~Gv~~I~-~~G-----~~FDP~~HEAv 150 (194)
T PRK14153 82 LEQVLLDLLEVTDNFERALESARTAEDMNSIVEGIEMVSKQFFSILE--KYGLERIE-CEG-----EEFDPHRHEAM 150 (194)
T ss_pred HHHHHHHHhhHHhHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH--HCCCeeeC-CCC-----CCCChhHhcee
Confidence 346889999998877 232 2234568899999999999998885 55556655 123 23667666543
No 17
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.70 E-value=43 Score=28.82 Aligned_cols=37 Identities=27% Similarity=0.443 Sum_probs=29.4
Q ss_pred hhhhHHHHhH--HHHHHhHHhhHHHHHHHHHHHHhhhhHhhh
Q 010110 86 KYTLERKVSE--LRMAIDEKQNEAITSALNELARRKGVLEEN 125 (518)
Q Consensus 86 K~vLErriA~--mR~A~DqqQqdlvdaAsKaLsyRq~iiEEN 125 (518)
...||+||.+ +|+|| |.+.|+.-|-+|..-|-+|+.+
T Consensus 3 ~~~lE~Ri~eLE~r~Af---QE~tieeLn~~laEq~~~i~k~ 41 (72)
T COG2900 3 DMELEARIIELEIRLAF---QEQTIEELNDALAEQQLVIDKL 41 (72)
T ss_pred hhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999986 58898 7778999888888888777754
No 18
>PF15294 Leu_zip: Leucine zipper
Probab=42.03 E-value=2.6e+02 Score=29.36 Aligned_cols=41 Identities=22% Similarity=0.232 Sum_probs=36.0
Q ss_pred hhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHH
Q 010110 58 ARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRM 98 (518)
Q Consensus 58 ~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~ 98 (518)
++.-.+|...||.||...--.=...+.||..|++.+.+||.
T Consensus 134 i~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 134 IDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556788999999999888888889999999999999998
No 19
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=40.45 E-value=46 Score=31.98 Aligned_cols=53 Identities=28% Similarity=0.433 Sum_probs=40.2
Q ss_pred cccccceEEEEeecceEEEeCCCcceeeeecCCCceeEecCC------CcceEEEEecCC
Q 010110 429 SENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCG------LSTQFVLTFSDG 482 (518)
Q Consensus 429 ~d~wE~atL~IrRegY~IK~~~~~~~I~EKfs~~~~IkIp~g------~~~qfvI~~sdG 482 (518)
.+.|+ ..|-|.=-||.+...++.+.|.==||-...+.||.| .+++.+|.+.|-
T Consensus 80 t~Gf~-~~L~lvGvGyr~~~~g~~l~l~LG~sh~i~~~IP~gv~v~~~~~t~I~i~G~dk 138 (178)
T CHL00140 80 SEGFE-KKLELQGVGYRAQVQGKDLILNLGYSHPVKIKIPPGISVEVENNTNITIKGIDK 138 (178)
T ss_pred ccCce-EEEEEEEEEEEEEEeCCcEEEEecCCeeEEEECCCCeEEEeCCCCEEEEEECCH
Confidence 46676 778888888999998777888777888899999976 344566666554
No 20
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=40.09 E-value=2.5e+02 Score=33.02 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=75.9
Q ss_pred hhhhcchhhhHHHHhHHHHHHhHHhhHH-------------HHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHHHHHHH
Q 010110 80 LQLQNEKYTLERKVSELRMAIDEKQNEA-------------ITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSM 146 (518)
Q Consensus 80 ~Qll~EK~vLErriA~mR~A~DqqQqdl-------------vdaAsKaLsyRq~iiEENiRLtyalq~aeqERs~fvssL 146 (518)
--|++||++|+.-|+.|--+.|-.++.+ +..-+|.|--++..||.+=|.+=++.---...-.++..
T Consensus 499 k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek- 577 (698)
T KOG0978|consen 499 KLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEK- 577 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3578899999999999887777666543 33456777778888887766654433222222222222
Q ss_pred HHHhhhc-CCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccc
Q 010110 147 LGLLADY-GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (518)
Q Consensus 147 LpLLaEY-~lqP~v~dAqSIvs~vKvL~~~Lq~kl~~~e~klke~~ 191 (518)
.=+.+ .+++.+.|+.+=+...+--.+||++++..+..||....
T Consensus 578 --~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 578 --SEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22344 67888888888888888889999999999999988776
No 21
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=39.77 E-value=67 Score=25.06 Aligned_cols=40 Identities=38% Similarity=0.426 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHh
Q 010110 63 EEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQ 104 (518)
Q Consensus 63 eeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~A~DqqQ 104 (518)
|.|..+|..|-+| |.+.=..|-.+||+-+.+|+-.|++||
T Consensus 3 eQi~~I~~~I~qA--k~~~r~dEV~~L~~NL~EL~~e~~~qq 42 (42)
T PF11464_consen 3 EQINIIESYIKQA--KAARRFDEVATLEENLRELQDEIDEQQ 42 (42)
T ss_dssp HHHHHHHHHHHHH--HHTT-HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHhcC
Confidence 5678888888876 677788999999999999999999987
No 22
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=39.49 E-value=3.6e+02 Score=33.20 Aligned_cols=139 Identities=17% Similarity=0.138 Sum_probs=90.9
Q ss_pred hhhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhH------
Q 010110 49 REAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVL------ 122 (518)
Q Consensus 49 ~~~~~l~~~~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~A~DqqQqdlvdaAsKaLsyRq~ii------ 122 (518)
+.-.+|+...+..++||......+-+..-+.-+|..|+.-|+.-.+.+|.++- ++++..|++--+|..|++-+
T Consensus 734 ~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~-~e~~~l~~l~~el~~r~dk~~s~e~~ 812 (1074)
T KOG0250|consen 734 SKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQ-GEISKLDALKEELKLREDKLRSAEDE 812 (1074)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHhhhhhh
Confidence 44567788888899999999888888888999999999999999999999995 55666778878888887755
Q ss_pred ----hhhhh-hhhhhhhhhhhhHHHHHHHHHHh-------hhcCCCC-CcccchhhhhhHHHHHHHHHHHHHhhhhhhcc
Q 010110 123 ----EENLK-LAHDLKVAEDERYFFMSSMLGLL-------ADYGLWP-HVTNASAISNTVKHLYDQLQSQIRTSYDRIRD 189 (518)
Q Consensus 123 ----EENiR-Ltyalq~aeqERs~fvssLLpLL-------aEY~lqP-~v~dAqSIvs~vKvL~~~Lq~kl~~~e~klke 189 (518)
|++++ -.-++.-+|-| .+..=.|+. +++-=-| -+.+-+--+.-+|.--+.|+.+++-.++.+.+
T Consensus 813 ~~HyE~~~K~~l~~l~~~E~~---~~~~e~~~~e~~~ka~~~cp~~~~ei~~~~~~~~eik~ei~rlk~~i~~~ee~~~~ 889 (1074)
T KOG0250|consen 813 KRHYEDKLKSRLEELKQKEVE---KVNLEEPRAEEDQKARTECPEEGIEIEALGKTVAEIKREIKRLKRQIQMCEESLGE 889 (1074)
T ss_pred hhhHHHHHHHhhHHHHHHHHH---HHhhhcchhhhCchhhhhCccccchhhcccchHHHHHHHHHHHHHHHHHHHHhcch
Confidence 34555 12222222222 222222222 2221000 11111113566777788888888888877776
Q ss_pred cc
Q 010110 190 LT 191 (518)
Q Consensus 190 ~~ 191 (518)
++
T Consensus 890 ~~ 891 (1074)
T KOG0250|consen 890 LE 891 (1074)
T ss_pred HH
Confidence 66
No 23
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=39.37 E-value=1.7e+02 Score=29.93 Aligned_cols=92 Identities=17% Similarity=0.297 Sum_probs=64.2
Q ss_pred cHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhH
Q 010110 61 QKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERY 140 (518)
Q Consensus 61 ~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~A~DqqQqdlvdaAsKaLsyRq~iiEENiRLtyalq~aeqERs 140 (518)
.+.|+..+++.+.+.=+.=--|-+++.-||-.|..+|=-.+--+..+ ++++++=-|+. |..+++.|++.+-
T Consensus 36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~a--------L~~E~~~ak~r~~ 106 (239)
T COG1579 36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRA--------LNIEIQIAKERIN 106 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHH--------HHHHHHHHHHHHH
Confidence 34566777777777766666677888888888888875555555555 67766655553 6777888888888
Q ss_pred HHHHHHHHHhhhc-CCCCCccc
Q 010110 141 FFMSSMLGLLADY-GLWPHVTN 161 (518)
Q Consensus 141 ~fvssLLpLLaEY-~lqP~v~d 161 (518)
..-+.|.+|+-++ .|+=-..+
T Consensus 107 ~le~el~~l~~~~~~l~~~i~~ 128 (239)
T COG1579 107 SLEDELAELMEEIEKLEKEIED 128 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888777 44443333
No 24
>PRK14148 heat shock protein GrpE; Provisional
Probab=38.75 E-value=3.4e+02 Score=26.97 Aligned_cols=64 Identities=14% Similarity=0.193 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHhhhc----CCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCC
Q 010110 139 RYFFMSSMLGLLADY----GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGV 210 (518)
Q Consensus 139 Rs~fvssLLpLLaEY----~lqP~v~dAqSIvs~vKvL~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~q~ 210 (518)
..-|+..|||.+--+ +.-+.-.++.+|+.+|+-.+++|..=|. ..-|+++. +.| ..++|+.|+-
T Consensus 89 ~~~~~~~LLpV~DnlerAl~~~~~~~~~~~l~~Gv~mi~k~l~~vL~--k~Gv~~I~-~~G-----~~FDP~~HEA 156 (195)
T PRK14148 89 IEKFAKELLPVIDSIEQALKHEVKLEEAIAMKEGIELTAKMLVDILK--KNGVEELD-PKG-----EKFDPNLHEA 156 (195)
T ss_pred HHHHHHHHhhHHhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHH--HCCCEEeC-CCC-----CCCChhHhhe
Confidence 346889999998877 2234334567899999999999988875 44555554 112 2366766654
No 25
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.98 E-value=81 Score=35.49 Aligned_cols=80 Identities=26% Similarity=0.283 Sum_probs=54.9
Q ss_pred cchhhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHh---------------------HHHHHHhHHhh
Q 010110 47 QDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVS---------------------ELRMAIDEKQN 105 (518)
Q Consensus 47 ~d~~~~~l~~~~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA---------------------~mR~A~DqqQq 105 (518)
||-++..---+++.-.|++..|.||=||+++|=+++.+---.|++||= +||.-+|--++
T Consensus 346 Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~ 425 (508)
T KOG3091|consen 346 QDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLA 425 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHH
Confidence 455555444566777788889999999999999999998889999982 34444443333
Q ss_pred HHHHHHHHHHHHhhhhHhhhhhh
Q 010110 106 EAITSALNELARRKGVLEENLKL 128 (518)
Q Consensus 106 dlvdaAsKaLsyRq~iiEENiRL 128 (518)
.+=+= .+|.-|=++|-|=+|.
T Consensus 426 ~ln~P--nq~k~Rl~~L~e~~r~ 446 (508)
T KOG3091|consen 426 QLNAP--NQLKARLDELYEILRM 446 (508)
T ss_pred HhcCh--HHHHHHHHHHHHHHHh
Confidence 33222 5677777777666654
No 26
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=37.05 E-value=6.3e+02 Score=28.14 Aligned_cols=92 Identities=24% Similarity=0.289 Sum_probs=51.6
Q ss_pred hccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhh
Q 010110 59 RMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDE 138 (518)
Q Consensus 59 r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~A~DqqQqdlvdaAsKaLsyRq~iiEENiRLtyalq~aeqE 138 (518)
+.-..||..+.+.|++..=+=.+|..+--.||+.|+.++ ..|+..+..-=.-+++|-+=|=+| -+|++.+.|
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~-------~ql~~s~~~l~~~~~~I~~~~~~l-~~l~~q~r~ 112 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLE-------AQLIETADDLKKLRKQIADLNARL-NALEVQERE 112 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHhhHHHHHHHH-HHHHHHHHH
Confidence 344455556666655555444444444445555554443 334443332222333333333333 367777788
Q ss_pred hHHHHHHHHHHhhhcCCCCC
Q 010110 139 RYFFMSSMLGLLADYGLWPH 158 (518)
Q Consensus 139 Rs~fvssLLpLLaEY~lqP~ 158 (518)
|.-+++-+|--+--.+..||
T Consensus 113 qr~~La~~L~A~~r~g~~p~ 132 (420)
T COG4942 113 QRRRLAEQLAALQRSGRNPP 132 (420)
T ss_pred HHHHHHHHHHHHHhccCCCC
Confidence 89999988888877788885
No 27
>PRK14154 heat shock protein GrpE; Provisional
Probab=36.90 E-value=3.7e+02 Score=27.10 Aligned_cols=152 Identities=13% Similarity=0.147 Sum_probs=82.0
Q ss_pred CChhhhhhccccc-ccccccccCCCC--ccccchhhhhH-HHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHh
Q 010110 19 KNSDFVNRHKIET-HLAPTKQKEDNF--ISFQDREAMEL-YSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVS 94 (518)
Q Consensus 19 ~~s~~~~r~~~~~-~l~~~~~~~~~~--~~~~d~~~~~l-~~~~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA 94 (518)
|-|++-..++.++ .-+..-+.++.- ..-|.|+-..+ +..+...+++|..|+++++++-= +
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~le~e~~elkd--------~-------- 74 (208)
T PRK14154 11 PESETKAKNKWEKVMEAEEEQEEGGGDGSQEMEPHREGLEFPSREKLEGQLTRMERKVDEYKT--------Q-------- 74 (208)
T ss_pred chhhhhhhhHHHHHHHHHHHHhhcCCCcccccCcccccccCcchhhHHHHHHHHHHHHHHHHH--------H--------
Confidence 5666666666655 222223333322 33467776666 44555566777777777765421 1
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHHHHHHHHHHhhhc--CCC--C-CcccchhhhhhH
Q 010110 95 ELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADY--GLW--P-HVTNASAISNTV 169 (518)
Q Consensus 95 ~mR~A~DqqQqdlvdaAsKaLsyRq~iiEENiRLtyalq~aeqERs~fvssLLpLLaEY--~lq--P-~v~dAqSIvs~v 169 (518)
+||+.=|- =.||+..-.|=- ++-..-..-|+..|||.+-.+ -|. + .-.+..+|+..|
T Consensus 75 ~lRl~ADf------------eNyRKR~~kE~e------~~~~~a~e~~~~~LLpVlDnLeRAL~~~~~~~~~~~~l~eGv 136 (208)
T PRK14154 75 YLRAQAEM------------DNLRKRIEREKA------DIIKFGSKQLITDLLPVADSLIHGLESPASEDPQVKSMRDGM 136 (208)
T ss_pred HHHHHHHH------------HHHHHHHHHHHH------HHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHHHHHHH
Confidence 23332211 123333322210 111122346888999988777 232 1 223467899999
Q ss_pred HHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 010110 170 KHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 211 (518)
Q Consensus 170 KvL~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~q~p 211 (518)
+-.+++|..-|. ..-|+++.-.+| ..++|+.|+-.
T Consensus 137 emi~k~l~~vL~--k~GVe~I~~~~G-----~~FDP~~HEAv 171 (208)
T PRK14154 137 SLTLDLLHNTLA--KHGVQVINPNPG-----DPFDPALHEAM 171 (208)
T ss_pred HHHHHHHHHHHH--HCCCEEecCCCC-----CCCChhHhhee
Confidence 999999988885 555666652233 24666666543
No 28
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.77 E-value=1.5e+02 Score=34.04 Aligned_cols=128 Identities=22% Similarity=0.209 Sum_probs=83.7
Q ss_pred hhhhccccc-ccccccccCCCCccccchhhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHh
Q 010110 23 FVNRHKIET-HLAPTKQKEDNFISFQDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAID 101 (518)
Q Consensus 23 ~~~r~~~~~-~l~~~~~~~~~~~~~~d~~~~~l~~~~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~A~D 101 (518)
.|+|+.+-- -|..++-.-| .+|++..| +|||..|-|+|--+..|..||| |+||.
T Consensus 231 ElkRye~w~~El~k~krs~d-----e~p~netL-------k~e~dr~~kklk~~~~KQeqLL-------------rva~y 285 (791)
T KOG1222|consen 231 ELKRYEFWIAELKKTKRSTD-----EKPKNETL-------KEEIDRLNKKLKTAIRKQEQLL-------------RVAVY 285 (791)
T ss_pred HHHHHHHHHHHHhhhhcccc-----cCcchhhH-------HHHHHHHHHHHHHHHHHHHHHH-------------HHHHH
Confidence 567776543 3433332222 67888777 8999999999999999999985 44544
Q ss_pred HHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHHHHHHHHHHhhhcCCCCCcccchhhhhhHHHHHHHHHH
Q 010110 102 EKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQS 178 (518)
Q Consensus 102 qqQqdlvdaAsKaLsyRq~iiEENiRLtyalq~aeqERs~fvssLLpLLaEY~lqP~v~dAqSIvs~vKvL~~~Lq~ 178 (518)
--=+ |..-.+-+|.-|...|-. -|--||+..--+..|.|++.|-=|+=|+=---|.-+--||.-+-.||+-=..
T Consensus 286 lLlN-lAed~~~ElKMrrkniV~--mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~ 359 (791)
T KOG1222|consen 286 LLLN-LAEDISVELKMRRKNIVA--MLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHP 359 (791)
T ss_pred HHHH-HhhhhhHHHHHHHHhHHH--HHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCH
Confidence 3222 223334444443322211 3556677777788899999999998887777777777888777777754333
No 29
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=35.57 E-value=3.8e+02 Score=30.13 Aligned_cols=57 Identities=11% Similarity=0.154 Sum_probs=33.4
Q ss_pred hccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhHHHHHHHHHHH
Q 010110 59 RMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELA 116 (518)
Q Consensus 59 r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~A~DqqQqdlvdaAsKaLs 116 (518)
.+.++++..++.+|...--....+..+...|+.|+...|-+..+|++. ...|.+.|+
T Consensus 56 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~-l~~~~~~L~ 112 (475)
T PRK10361 56 EHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQ-MINSEQRLS 112 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 344445555555555555555555666667888888888888665543 444444443
No 30
>PF01895 PhoU: PhoU domain; InterPro: IPR008170 This family contains phosphate regulatory proteins including PhoU. PhoU proteins are known to play a role in the regulation of phosphate uptake. The PhoU domain is composed of a three helix bundle []. The PhoU protein contains two copies of this domain. The domain binds to an iron cluster via its conserved E/DXXXD motif. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect; suggesting that the protein has some secondary function []. ; PDB: 2I0M_A 1T72_B 1T8B_A 1SUM_B 1VCT_A 2BKN_A 2BKP_A 2BKO_A.
Probab=35.29 E-value=1.3e+02 Score=23.30 Aligned_cols=50 Identities=36% Similarity=0.302 Sum_probs=35.9
Q ss_pred hhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHh
Q 010110 52 MELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAID 101 (518)
Q Consensus 52 ~~l~~~~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~A~D 101 (518)
.++..++...|++|..|...+.++.++..+-.+....++.=+.+|+++.+
T Consensus 24 ~~~a~~i~~~e~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 73 (88)
T PF01895_consen 24 SELAQEIIQLEEEIDELYREIRRQILKILKNQNPLEELRELVGLLRIARD 73 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 46667888999999999999999988877543433335555666666544
No 31
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=35.21 E-value=4e+02 Score=25.89 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=21.7
Q ss_pred HhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhHH
Q 010110 57 RARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEA 107 (518)
Q Consensus 57 ~~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~A~DqqQqdl 107 (518)
.++....++..++.+++...-+=.++..+-..+-+|++++|-+.....+.|
T Consensus 57 ~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 57 EIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443332223333333344444444444444444433
No 32
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=35.15 E-value=1.3e+02 Score=33.78 Aligned_cols=58 Identities=19% Similarity=0.416 Sum_probs=31.1
Q ss_pred cccCccchHHHH-HHHHhcceEEEEEeecCccccccceEE-EEe---ecceEEEeCC--Ccceeeeec
Q 010110 399 IKCDLGMQSEID-AYISRGHATFSVLMLMDSSENWEQATL-ILR---RSIYRIKIDS--TEAIIEERF 459 (518)
Q Consensus 399 I~cDpeMq~~I~-~~l~~G~Asf~V~ll~~~~d~wE~atL-~Ir---RegY~IK~~~--~~~~I~EKf 459 (518)
-..|++-+..|= .++.. ++-+|-+++.. ..|..-+. .|+ -..|.|..+. +..+|++.|
T Consensus 585 ~~lD~~~r~~l~~~~~~~--~~~QvIils~d-~e~~~~~~~~l~~~i~~~y~l~y~~~~~~t~i~~gY 649 (650)
T TIGR03185 585 GRLDSSHRENLVVNYFPK--ASHQVLLLSTD-EEVDEKHYNLLKPNISHEYLLEFDDEARTSVVTEGY 649 (650)
T ss_pred cccChHHHHHHHHHHhhc--cCCeEEEEech-HhhCHHHHHHHHHHhhhheEEEecCCcCceeecCCC
Confidence 567887777753 56654 46777777542 23333211 111 1137777774 445666655
No 33
>PLN02939 transferase, transferring glycosyl groups
Probab=34.66 E-value=2.7e+02 Score=33.91 Aligned_cols=100 Identities=25% Similarity=0.372 Sum_probs=61.5
Q ss_pred hhhhHHHHhhccHHHHHHHHHHHHHHhhhhh-hhhcchhhhHHHHh--HHHHHHhHHhhH--------------------
Q 010110 50 EAMELYSRARMQKEEIHSLRQQIAVACLKEL-QLQNEKYTLERKVS--ELRMAIDEKQNE-------------------- 106 (518)
Q Consensus 50 ~~~~l~~~~r~~eeeI~~Lrk~Lad~s~Ke~-Qll~EK~vLErriA--~mR~A~DqqQqd-------------------- 106 (518)
.-.+|..-++.-|.-|+.|-+ ...-.+.++ .||+||..|.++|. +||+|=-..+-.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (977)
T PLN02939 129 QLEDLVGMIQNAEKNILLLNQ-ARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLR 207 (977)
T ss_pred cHHHHHHHHHHHHhhhHhHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHh
Confidence 345666667777777876543 233344444 48999999988865 666664211110
Q ss_pred ------------HHHHHHHHHHHhhhhHhhhhhhhhhhhh-----------------hhhhhHHHHHHHHHHhhhc
Q 010110 107 ------------AITSALNELARRKGVLEENLKLAHDLKV-----------------AEDERYFFMSSMLGLLADY 153 (518)
Q Consensus 107 ------------lvdaAsKaLsyRq~iiEENiRLtyalq~-----------------aeqERs~fvssLLpLLaEY 153 (518)
-|.+-+++|. .+-|||+-|--+++. .+.||+..=+||-.|=+.|
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (977)
T PLN02939 208 NELLIRGATEGLCVHSLSKELD---VLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKF 280 (977)
T ss_pred hhhhccccccccccccHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112355554 345899999988876 4567777777777765555
No 34
>PRK02119 hypothetical protein; Provisional
Probab=33.61 E-value=93 Score=26.17 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=27.7
Q ss_pred cchhhhHHHHhHH--HHHHhHHhhHHHHHHHHHHHHhhhhHh
Q 010110 84 NEKYTLERKVSEL--RMAIDEKQNEAITSALNELARRKGVLE 123 (518)
Q Consensus 84 ~EK~vLErriA~m--R~A~DqqQqdlvdaAsKaLsyRq~iiE 123 (518)
+|-..+|.||.+| |+|| |.+.|+.=++++..=|..|.
T Consensus 2 ~~~~~~e~Ri~~LE~rla~---QE~tie~LN~~v~~Qq~~id 40 (73)
T PRK02119 2 QIQQNLENRIAELEMKIAF---QENLLEELNQALIEQQFVID 40 (73)
T ss_pred cchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3455688888764 7777 88999999999887776553
No 35
>PRK02793 phi X174 lysis protein; Provisional
Probab=33.14 E-value=98 Score=25.94 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=25.2
Q ss_pred hhHHHHhHH--HHHHhHHhhHHHHHHHHHHHHhhhhHh
Q 010110 88 TLERKVSEL--RMAIDEKQNEAITSALNELARRKGVLE 123 (518)
Q Consensus 88 vLErriA~m--R~A~DqqQqdlvdaAsKaLsyRq~iiE 123 (518)
.+|.||.+| |+|| |++.|+.=++++..=|..|.
T Consensus 5 ~~e~Ri~~LE~~laf---Qe~tIe~Ln~~v~~Qq~~I~ 39 (72)
T PRK02793 5 SLEARLAELESRLAF---QEITIEELNVTVTAHEMEMA 39 (72)
T ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 377787754 7777 88999999999988775553
No 36
>PRK14162 heat shock protein GrpE; Provisional
Probab=32.29 E-value=4.9e+02 Score=25.84 Aligned_cols=64 Identities=14% Similarity=0.215 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhhcC--CC--CCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 010110 140 YFFMSSMLGLLADYG--LW--PHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 211 (518)
Q Consensus 140 s~fvssLLpLLaEY~--lq--P~v~dAqSIvs~vKvL~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~q~p 211 (518)
.-|+..|||.+--+. |. |.-.+..+|+.+|+-.+++|..=|. ..-|+++. ..| ..++|+.|+--
T Consensus 89 ~~~~~~LLpV~DnLerAl~~~~~~~~~~~l~~Gvemi~k~l~~vL~--~~GV~~I~-~~G-----~~FDP~~HEAv 156 (194)
T PRK14162 89 QSLAKDVLPAMDNLERALAVKADDEAAKQLKKGVQMTLDHLVKALK--DHGVTEIK-ADG-----EKFDPTLHQAV 156 (194)
T ss_pred HHHHHHHhhHHhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHH--HCCCEEeC-CCC-----CCCChhHhhhh
Confidence 458899999988773 22 3323457899999999999988875 44555554 123 23667666543
No 37
>PRK14154 heat shock protein GrpE; Provisional
Probab=32.04 E-value=2.4e+02 Score=28.38 Aligned_cols=27 Identities=7% Similarity=0.054 Sum_probs=16.7
Q ss_pred cchhhhhHHHHhhccHHHHHHHHHHHH
Q 010110 47 QDREAMELYSRARMQKEEIHSLRQQIA 73 (518)
Q Consensus 47 ~d~~~~~l~~~~r~~eeeI~~Lrk~La 73 (518)
.-|+-.+|-.++.+-++++..|+.++.
T Consensus 50 ~~~~~~~l~~el~~le~e~~elkd~~l 76 (208)
T PRK14154 50 EFPSREKLEGQLTRMERKVDEYKTQYL 76 (208)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 345555565666667777776666553
No 38
>PRK11020 hypothetical protein; Provisional
Probab=31.27 E-value=75 Score=29.65 Aligned_cols=40 Identities=28% Similarity=0.439 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhh-----hhhhhcchhhhHHHHhHHHHHHhHHhhHHHH
Q 010110 67 SLRQQIAVACLK-----ELQLQNEKYTLERKVSELRMAIDEKQNEAIT 109 (518)
Q Consensus 67 ~Lrk~Lad~s~K-----e~Qll~EK~vLErriA~mR~A~DqqQqdlvd 109 (518)
.+|.+||.+... =+|+..|+..|+++|+.|+= +|.++|-.
T Consensus 16 ~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~---~~~~~lsk 60 (118)
T PRK11020 16 AIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKE---VQSQKLSK 60 (118)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 345556655443 37899999999999999983 44444433
No 39
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=31.14 E-value=3.6e+02 Score=23.56 Aligned_cols=84 Identities=23% Similarity=0.286 Sum_probs=53.7
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhh--hhhhhhhhhhHHH-HHHHHHHhhhcCCCCCcccchhhhh
Q 010110 91 RKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLA--HDLKVAEDERYFF-MSSMLGLLADYGLWPHVTNASAISN 167 (518)
Q Consensus 91 rriA~mR~A~DqqQqdlvdaAsKaLsyRq~iiEENiRLt--yalq~aeqERs~f-vssLLpLLaEY~lqP~v~dAqSIvs 167 (518)
++++++|-.+|+-=..||+- |+.|..+..+--++- ..+-+-+.+|-.- +..+.-+..++||.|.+
T Consensus 3 ~~L~~lR~~ID~ID~qLv~L----L~~R~~~~~~ia~~K~~~~~~v~dp~Re~~vl~~~~~~a~~~gl~p~~-------- 70 (94)
T TIGR01795 3 AELKALRQSIDNIDAAVIHM----LAERFKCTSQVGVLKANAGLAPADPAREDYQIARLRRLAIDAGLDPEF-------- 70 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHH--------
Confidence 35677787777766666654 555555555544333 2344444555433 35678888999999985
Q ss_pred hHHHHHHHHHHHHHhhhhhh
Q 010110 168 TVKHLYDQLQSQIRTSYDRI 187 (518)
Q Consensus 168 ~vKvL~~~Lq~kl~~~e~kl 187 (518)
+..||+.+.+.....++++
T Consensus 71 -~e~i~~~i~~esir~q~~~ 89 (94)
T TIGR01795 71 -AEKFLNFIVTEVIKHHERI 89 (94)
T ss_pred -HHHHHHHHHHHHHHHHHHH
Confidence 3677888888777666553
No 40
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=30.67 E-value=2.7e+02 Score=25.92 Aligned_cols=27 Identities=11% Similarity=0.282 Sum_probs=11.4
Q ss_pred chhhhhhHHHHHHHHHHHHHhhhhhhc
Q 010110 162 ASAISNTVKHLYDQLQSQIRTSYDRIR 188 (518)
Q Consensus 162 AqSIvs~vKvL~~~Lq~kl~~~e~klk 188 (518)
...-+...+.-+.+++..+....+++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (191)
T PF04156_consen 156 SREEVQELRSQLERLQENLQQLEEKIQ 182 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 41
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=29.36 E-value=2.4e+02 Score=32.80 Aligned_cols=67 Identities=33% Similarity=0.419 Sum_probs=47.0
Q ss_pred HHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHH--hHHhhHHHHHHHHHHHHhhhhHhhhhh
Q 010110 54 LYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAI--DEKQNEAITSALNELARRKGVLEENLK 127 (518)
Q Consensus 54 l~~~~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~A~--DqqQqdlvdaAsKaLsyRq~iiEENiR 127 (518)
+=.|.++.|.||.+||.-|. .||-| +..||..+.+||+.- +++-.+..=+|+-||--+-.+||+|+.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk---~kee~----~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLs 611 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELK---QKEEQ----IRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLS 611 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHH----HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55677888999999987553 56654 467899999999852 244456666777777766667776654
No 42
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=29.28 E-value=4.6e+02 Score=30.43 Aligned_cols=17 Identities=6% Similarity=0.120 Sum_probs=13.1
Q ss_pred cccCccchHHHHHHHHh
Q 010110 399 IKCDLGMQSEIDAYISR 415 (518)
Q Consensus 399 I~cDpeMq~~I~~~l~~ 415 (518)
|.||++....|+..+.+
T Consensus 606 i~~~~~~~~~~~~~lg~ 622 (1164)
T TIGR02169 606 VEFDPKYEPAFKYVFGD 622 (1164)
T ss_pred ccCcHHHHHHHHHHCCC
Confidence 78898888888776554
No 43
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=29.17 E-value=77 Score=27.39 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=27.0
Q ss_pred CccccchhhhhHHHHhhccHHHHHHHHHHHHHHhhh
Q 010110 43 FISFQDREAMELYSRARMQKEEIHSLRQQIAVACLK 78 (518)
Q Consensus 43 ~~~~~d~~~~~l~~~~r~~eeeI~~Lrk~Lad~s~K 78 (518)
...+.++.+++|+.-+-.-|+||..|-+++-+.-.+
T Consensus 48 ~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~ 83 (88)
T PF14389_consen 48 SPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQ 83 (88)
T ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999888888888888777776654433
No 44
>PRK14139 heat shock protein GrpE; Provisional
Probab=29.15 E-value=4.4e+02 Score=26.02 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhhc--CCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 010110 140 YFFMSSMLGLLADY--GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 211 (518)
Q Consensus 140 s~fvssLLpLLaEY--~lqP~v~dAqSIvs~vKvL~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~q~p 211 (518)
.-|+..|||.+-.+ -|.=.-.+..+|+.+|+-.+++|..=|. ..-|+++. ..| ..++|+.|+-.
T Consensus 82 ~~~~~~LLpv~DnLerAl~~~~~~~~~l~~Gv~mi~k~l~~vL~--k~Gv~~I~-~~G-----~~FDP~~HEAv 147 (185)
T PRK14139 82 ESFAESLLPVKDSLEAALADESGDLEKLREGVELTLKQLTSAFE--KGRVVEIN-PVG-----EKFDPHQHQAI 147 (185)
T ss_pred HHHHHHHhhHHhHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH--HCCCceeC-CCC-----CCCChHHhhee
Confidence 45888899998777 2221113567899999999999888774 44555555 223 24667666543
No 45
>PF14048 MBD_C: C-terminal domain of methyl-CpG binding protein 2 and 3; PDB: 2L2L_B.
Probab=28.75 E-value=41 Score=29.85 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=17.6
Q ss_pred HHhhccHHHHHHHHHHHHHH
Q 010110 56 SRARMQKEEIHSLRQQIAVA 75 (518)
Q Consensus 56 ~~~r~~eeeI~~Lrk~Lad~ 75 (518)
.-+|.||+-....|+|||+|
T Consensus 76 eDIr~QE~rVk~aR~RLaeA 95 (96)
T PF14048_consen 76 EDIRRQERRVKKARKRLAEA 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999987
No 46
>PRK00295 hypothetical protein; Provisional
Probab=28.26 E-value=1.3e+02 Score=24.87 Aligned_cols=31 Identities=32% Similarity=0.499 Sum_probs=21.5
Q ss_pred hHHHHhH--HHHHHhHHhhHHHHHHHHHHHHhhhhH
Q 010110 89 LERKVSE--LRMAIDEKQNEAITSALNELARRKGVL 122 (518)
Q Consensus 89 LErriA~--mR~A~DqqQqdlvdaAsKaLsyRq~ii 122 (518)
+|.||.+ +|+|| |++.|+.=++++..=|..|
T Consensus 3 ~e~Ri~~LE~kla~---qE~tie~Ln~~v~~Qq~~I 35 (68)
T PRK00295 3 LEERVTELESRQAF---QDDTIQALNDVLVEQQRVI 35 (68)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 5566664 36666 7788888888887777444
No 47
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=28.14 E-value=5.7e+02 Score=25.31 Aligned_cols=84 Identities=23% Similarity=0.233 Sum_probs=40.0
Q ss_pred HHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhh----hhhhhhhhhhhhhhhHHHH
Q 010110 68 LRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEE----NLKLAHDLKVAEDERYFFM 143 (518)
Q Consensus 68 Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~A~DqqQqdlvdaAsKaLsyRq~iiEE----NiRLtyalq~aeqERs~fv 143 (518)
..+++....-...+++.|...|++.+.-|+. |-++.+..|++.-+.+..-+.=|++ .-.|.=-+...-++...||
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~-~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v 118 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEV-YNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFV 118 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555566666666666666664 4555555555554444333222221 1112222333344444555
Q ss_pred HHHHHHhhh
Q 010110 144 SSMLGLLAD 152 (518)
Q Consensus 144 ssLLpLLaE 152 (518)
..-||++.+
T Consensus 119 ~~d~Pf~~~ 127 (251)
T PF11932_consen 119 ELDLPFLLE 127 (251)
T ss_pred hcCCCCChH
Confidence 555555544
No 48
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=27.95 E-value=1.4e+02 Score=25.38 Aligned_cols=63 Identities=22% Similarity=0.203 Sum_probs=33.2
Q ss_pred hhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhh
Q 010110 58 ARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAED 137 (518)
Q Consensus 58 ~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~A~DqqQqdlvdaAsKaLsyRq~iiEENiRLtyalq~aeq 137 (518)
.|+||+.|..|+|- +.++| =||-.| +++.. ...=..-++++.|||-|--.+...+.
T Consensus 2 lrEqe~~i~~L~KE--NF~LK------------LrI~fL-----ee~l~-----~~~~~~~~~~~keNieLKve~~~L~~ 57 (75)
T PF07989_consen 2 LREQEEQIDKLKKE--NFNLK------------LRIYFL-----EERLQ-----KLGPESIEELLKENIELKVEVESLKR 57 (75)
T ss_pred HHHHHHHHHHHHHh--hhhHH------------HHHHHH-----HHHHH-----hcccccHHHHHHHHHHHHHHHHHHHH
Confidence 57888988888873 23333 233322 22222 11123345667777777666666555
Q ss_pred hhHHHHH
Q 010110 138 ERYFFMS 144 (518)
Q Consensus 138 ERs~fvs 144 (518)
|-.-.-.
T Consensus 58 el~~~~~ 64 (75)
T PF07989_consen 58 ELQEKKK 64 (75)
T ss_pred HHHHHHH
Confidence 5444433
No 49
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=27.87 E-value=2.4e+02 Score=25.77 Aligned_cols=53 Identities=9% Similarity=0.187 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHHhhhc----CCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccc
Q 010110 137 DERYFFMSSMLGLLADY----GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (518)
Q Consensus 137 qERs~fvssLLpLLaEY----~lqP~v~dAqSIvs~vKvL~~~Lq~kl~~~e~klke~~ 191 (518)
....-|+..|||++.-+ .--+.-.+..++..+++.++++|..=|. .-.+.++.
T Consensus 58 ~~~~~~~~~ll~v~D~l~~a~~~~~~~~~~~~~~~g~~~~~~~l~~~L~--~~Gv~~i~ 114 (165)
T PF01025_consen 58 YALEKFLKDLLPVLDNLERALEAAKSNEEEESLLEGLEMILKQLEDILE--KNGVEEIE 114 (165)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCC-SHHCTCHHHHHHHHHHHHHHHHHHH--TTTEEEE-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH--HCCCEecC
Confidence 34556888899988766 2222334567788888888888876663 33444444
No 50
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=27.72 E-value=4.5e+02 Score=31.89 Aligned_cols=138 Identities=13% Similarity=0.095 Sum_probs=0.0
Q ss_pred chhhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhh
Q 010110 48 DREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLK 127 (518)
Q Consensus 48 d~~~~~l~~~~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~A~DqqQqdlvdaAsKaLsyRq~iiEENiR 127 (518)
+.....+-....+.++.+..+|..+++.--..+++.++...|++.|.+++...+.....+-+.-.+-..-+..+-+
T Consensus 361 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 436 (1163)
T COG1196 361 EELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEE---- 436 (1163)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHhhhc-CCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcc
Q 010110 128 LAHDLKVAEDERYFFMSSMLGLLADY-GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRD 189 (518)
Q Consensus 128 Ltyalq~aeqERs~fvssLLpLLaEY-~lqP~v~dAqSIvs~vKvL~~~Lq~kl~~~e~klke 189 (518)
+--+++...++-......+=-+..+. .++..+..+++-...++...+.++.++..++...+.
T Consensus 437 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 499 (1163)
T COG1196 437 LQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA 499 (1163)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 51
>PRK09293 fructose-1,6-bisphosphatase; Provisional
Probab=27.61 E-value=96 Score=32.68 Aligned_cols=77 Identities=25% Similarity=0.525 Sum_probs=55.6
Q ss_pred CCCcceeeeccccCCceeeeeEEEEEccCCceeeecCCCCCceeeeccccCceEEEEEEecCCCCCccceeeeec-ccCC
Q 010110 319 TPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFA-NDQN 397 (518)
Q Consensus 319 ~pG~~L~acG~~inGTtlC~FQWvRhleDGt~~~IeGA~~p~Y~vTADDVd~liAvec~PmDd~grkGElVk~~a-Nd~~ 397 (518)
-||+++.|.||-+=|.+... |=.+.+|...+.=....-+|++|-+++- +|- ++ ++|+ |+++
T Consensus 145 q~G~~~vaAgy~~YG~~t~l---v~t~g~gv~~ftld~~~g~f~l~~~~i~-------ip~--~~------~~ys~n~~n 206 (327)
T PRK09293 145 QPGNNQVAAGYVLYGPSTML---VLTTGDGVHGFTLDPSLGEFVLTHENIR-------IPE--DG------KEYAINEGN 206 (327)
T ss_pred CCchhheeEEEEEEcCceEE---EEEeCCCEEEEEEeCCCCeEEEecCCce-------eCC--CC------CEEccCchh
Confidence 39999999999998876543 2334677666655555567888877653 232 22 6899 8888
Q ss_pred ccccCccchHHHHHHHH
Q 010110 398 KIKCDLGMQSEIDAYIS 414 (518)
Q Consensus 398 kI~cDpeMq~~I~~~l~ 414 (518)
-=.+++.+|+-| .++.
T Consensus 207 ~~~w~~~~~~yi-~~~~ 222 (327)
T PRK09293 207 QRHWEPGVKKYI-ELLA 222 (327)
T ss_pred hhhcCHHHHHHH-HHhc
Confidence 889999999999 5553
No 52
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=27.34 E-value=82 Score=30.00 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=24.5
Q ss_pred hhhHHHHhhccHHHHHHHHHHHHHHh----hhhhhhhcchhhhHHHHhHHH
Q 010110 51 AMELYSRARMQKEEIHSLRQQIAVAC----LKELQLQNEKYTLERKVSELR 97 (518)
Q Consensus 51 ~~~l~~~~r~~eeeI~~Lrk~Lad~s----~Ke~Qll~EK~vLErriA~mR 97 (518)
|.+.|.+. ++|+..|+..|++|. +.| =..+...+|+||+||.
T Consensus 32 T~~G~~~L---~~El~~L~~~i~~Ar~~GDlsE--ak~~~~~~e~rI~~L~ 77 (160)
T PRK06342 32 TEAGLKAL---EDQLAQARAAYEAAQAIEDVNE--RRRQMARPLRDLRYLA 77 (160)
T ss_pred CHHHHHHH---HHHHHHHHHHHHHHHHCCChhH--HHHHHHHHHHHHHHHH
Confidence 55555554 678889988877773 334 1223344555655553
No 53
>PRK14149 heat shock protein GrpE; Provisional
Probab=26.71 E-value=3.7e+02 Score=26.68 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhhhcC--C--CCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 010110 139 RYFFMSSMLGLLADYG--L--WPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 211 (518)
Q Consensus 139 Rs~fvssLLpLLaEY~--l--qP~v~dAqSIvs~vKvL~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~q~p 211 (518)
..-|+..|||.|-.+. | -+...+..+|+.+|+-.+++|..-|. ..-|+++. | .| .++|+.|+.-
T Consensus 85 ~~~~~~~LLpVlDnLerAl~~~~~~~~~~~l~~Gv~mi~k~l~~vL~--k~GV~~I~--~---~G--~FDP~~HEAv 152 (191)
T PRK14149 85 YEKIALDLLPVIDALLGALKSAAEVDKESALTKGLELTMEKLHEVLA--RHGIEGIE--C---LE--EFDPNFHNAI 152 (191)
T ss_pred HHHHHHHHhhHHhHHHHHHhccccccchHHHHHHHHHHHHHHHHHHH--HCCCEEeC--C---CC--CCChHHhhee
Confidence 3568999999998872 2 23335667899999999999888775 33444443 2 23 3888777643
No 54
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=26.68 E-value=1.4e+02 Score=31.71 Aligned_cols=48 Identities=31% Similarity=0.275 Sum_probs=38.9
Q ss_pred hccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhH
Q 010110 59 RMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNE 106 (518)
Q Consensus 59 r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~A~DqqQqd 106 (518)
..|.|||.+|..+|+|.--|.-|+-.|+.-|=..++..+-+=.+-|-+
T Consensus 230 ~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aE 277 (306)
T PF04849_consen 230 RRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAE 277 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999988887776554333333
No 55
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=26.27 E-value=1.9e+02 Score=28.85 Aligned_cols=50 Identities=32% Similarity=0.419 Sum_probs=40.5
Q ss_pred hhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhHH
Q 010110 58 ARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEA 107 (518)
Q Consensus 58 ~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~A~DqqQqdl 107 (518)
+....+|+..+|+.+.....+=..|.+.+..||++|++|.--++.+.++.
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~ 260 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEY 260 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 35567888899999988888888889999999999999987777655543
No 56
>PLN02542 fructose-1,6-bisphosphatase
Probab=25.90 E-value=1.1e+02 Score=33.72 Aligned_cols=80 Identities=24% Similarity=0.420 Sum_probs=56.7
Q ss_pred CCCcceeeeccccCCceeeeeEEEEEccCCceeeecCCCCCceeeeccccCceEEEEEEecCCCCCccceeeeec-ccCC
Q 010110 319 TPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFA-NDQN 397 (518)
Q Consensus 319 ~pG~~L~acG~~inGTtlC~FQWvRhleDGt~~~IeGA~~p~Y~vTADDVd~liAvec~PmDd~grkGElVk~~a-Nd~~ 397 (518)
-||+++.|.||-+-|.+.-. |=.+.+|...+.=....=+|++|.+++ . +|- + =++|+ |++|
T Consensus 234 qpG~~qvAAGY~lYGpsT~L---Vlt~G~GV~~FtLDp~~geFvLt~~~i------~-IP~--~------g~iySiN~~N 295 (412)
T PLN02542 234 QPGSNLLAAGYCMYSSSVIF---VLTIGTGVFSFTLDPMYGEFVLTQENI------Q-IPK--A------GKIYSFNEGN 295 (412)
T ss_pred CcchhhhEEEEEEEccceEE---EEEECCCEEEEEEcCCCCeEEEeCCCe------e-eCC--C------CcEeeeCccc
Confidence 39999999999998865322 223467777666444455788887775 1 222 2 26788 7788
Q ss_pred ccccCccchHHHHHHHHhc
Q 010110 398 KIKCDLGMQSEIDAYISRG 416 (518)
Q Consensus 398 kI~cDpeMq~~I~~~l~~G 416 (518)
-=.+|+.+|.-|+.....|
T Consensus 296 ~~~W~~~~~~yi~~~~~~~ 314 (412)
T PLN02542 296 YQLWDDKLKKYIDDLKDPG 314 (412)
T ss_pred ccccCHHHHHHHHHHhhCC
Confidence 8889999999999998644
No 57
>PRK04406 hypothetical protein; Provisional
Probab=25.74 E-value=1.6e+02 Score=25.00 Aligned_cols=32 Identities=22% Similarity=0.489 Sum_probs=24.0
Q ss_pred hhHHHHhHH--HHHHhHHhhHHHHHHHHHHHHhhhhH
Q 010110 88 TLERKVSEL--RMAIDEKQNEAITSALNELARRKGVL 122 (518)
Q Consensus 88 vLErriA~m--R~A~DqqQqdlvdaAsKaLsyRq~ii 122 (518)
.||.||.+| |+|| |++.|+.=++++..=|..|
T Consensus 8 ~le~Ri~~LE~~lAf---QE~tIe~LN~~v~~Qq~~I 41 (75)
T PRK04406 8 QLEERINDLECQLAF---QEQTIEELNDALSQQQLLI 41 (75)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 467777754 6776 7889999888888777444
No 58
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=25.51 E-value=3.4e+02 Score=21.38 Aligned_cols=76 Identities=9% Similarity=0.087 Sum_probs=48.0
Q ss_pred ccccccceEEEEeecceEEEeC-CCc--ceeeeecCCCceeEecCCCcceEEEEecCCceeeeecCCCCCchhhHHHHH
Q 010110 428 SSENWEQATLILRRSIYRIKID-STE--AIIEERFPKEVSIKVPCGLSTQFVLTFSDGSSYPFSTYNVRMRDTLVLTMR 503 (518)
Q Consensus 428 ~~d~wE~atL~IrRegY~IK~~-~~~--~~I~EKfs~~~~IkIp~g~~~qfvI~~sdG~e~~Lr~~n~~~RD~iVLTlR 503 (518)
....|..-.++|+.....+-.. ++. .....-.=....|.++.+.+..|.|...+|..+.|.+.+...++.=|-.||
T Consensus 11 ~~~~W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~ 89 (91)
T cd01246 11 YLKGWQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGAVISEDDSDDKCFTIDTGGDKTLHLRANSEEERQRWVDALE 89 (91)
T ss_pred cCCCceeeEEEEECCEEEEEecCccCCCCceEEEEeceEEEEECCCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHH
Confidence 4578999999998655444222 221 222221122234666677788999999888899999988776665554443
No 59
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=25.09 E-value=3.5e+02 Score=27.75 Aligned_cols=47 Identities=21% Similarity=0.235 Sum_probs=30.2
Q ss_pred HHhhccHHHHHHHHHHHHHHhhhh---------hhhhcchhhhHHHHhHHHHHHhH
Q 010110 56 SRARMQKEEIHSLRQQIAVACLKE---------LQLQNEKYTLERKVSELRMAIDE 102 (518)
Q Consensus 56 ~~~r~~eeeI~~Lrk~Lad~s~Ke---------~Qll~EK~vLErriA~mR~A~Dq 102 (518)
..++..+.||.-+|+|++++..|= ..|-.|.+++++|++.|+=...+
T Consensus 59 ~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~ 114 (239)
T COG1579 59 NQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAE 114 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888887775542 13555667777777666655443
No 60
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=24.98 E-value=1.9e+02 Score=26.58 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=36.2
Q ss_pred ecccCCC--cceeeeccccCCceeeeeEEEEEccCCceeeecCCCC--Cceeeecc
Q 010110 315 IGEATPG--EKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATN--PEYVVTAD 366 (518)
Q Consensus 315 ~Gda~pG--~~L~acG~~inGTtlC~FQWvRhleDGt~~~IeGA~~--p~Y~vTAD 366 (518)
.+-+.|| +...-.||....-.-..|-.+..|+-|..-+|..+.+ -+|.||.-
T Consensus 41 ~~~~~pG~~Gn~viaGH~~~~g~~~~F~~L~~l~~GD~I~v~~~~g~~~~Y~V~~~ 96 (144)
T cd05829 41 AGGPKPGEKGTAVLAGHVDSRGGPAVFFRLGDLRKGDKVEVTRADGQTATFRVDRV 96 (144)
T ss_pred CCCCCCCCCCCEEEEEecCCCCCChhhcchhcCCCCCEEEEEECCCCEEEEEEeEE
Confidence 3444454 3556678875422457899999999999999998543 77877753
No 61
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=24.97 E-value=1.3e+02 Score=28.88 Aligned_cols=48 Identities=29% Similarity=0.279 Sum_probs=34.8
Q ss_pred hhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHH
Q 010110 51 AMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRM 98 (518)
Q Consensus 51 ~~~l~~~~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~ 98 (518)
......+....++++..|...+..+.-...+|.+....||.||.+|+-
T Consensus 86 Ar~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~ 133 (221)
T PF04012_consen 86 AREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKS 133 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777777777788887777777777777777777777763
No 62
>PRK11281 hypothetical protein; Provisional
Probab=24.70 E-value=3.7e+02 Score=33.16 Aligned_cols=71 Identities=21% Similarity=0.390 Sum_probs=51.1
Q ss_pred hhHHHHhHHHHHH---hHHhhHH------H----------------HHHHHHHHHhhhhHhhhhh-------hhhhhhhh
Q 010110 88 TLERKVSELRMAI---DEKQNEA------I----------------TSALNELARRKGVLEENLK-------LAHDLKVA 135 (518)
Q Consensus 88 vLErriA~mR~A~---DqqQqdl------v----------------daAsKaLsyRq~iiEENiR-------Ltyalq~a 135 (518)
.|.++||++|+.- .||+..| + ++..+-|.-|+++|++=++ +.=.||.+
T Consensus 357 ~l~~~iAdlrl~~f~~~q~~~~l~~~~~y~~~l~~~~~~~~~~~~~~~l~~ll~~r~~LL~~l~~~~~~~l~~~~~l~~~ 436 (1113)
T PRK11281 357 GLADRIADLRLEQFEINQQRDALFQPDAYIDKLEAGHKSEVTDEVRDALLQLLDERRELLDQLNKQLNNQLNLAINLQLN 436 (1113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3889999999763 2222111 1 2344678889999988433 45577888
Q ss_pred hhhhHHHHHHHHHHhhhcCCCCC
Q 010110 136 EDERYFFMSSMLGLLADYGLWPH 158 (518)
Q Consensus 136 eqERs~fvssLLpLLaEY~lqP~ 158 (518)
+|+-..-+.+|=-.|.|.-+|=+
T Consensus 437 q~Ql~~~~~~l~~~L~~~lfWv~ 459 (1113)
T PRK11281 437 QQQLLSVSDSLQSTLTQQIFWVN 459 (1113)
T ss_pred HHHHHHHHHHHHHHHHHhhhccC
Confidence 99998889999999999988844
No 63
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=24.43 E-value=1.4e+02 Score=28.73 Aligned_cols=53 Identities=21% Similarity=0.323 Sum_probs=37.9
Q ss_pred cccccceEEEEeecceEEEeCCCcceeeeecCCCceeEecCC------CcceEEEEecCC
Q 010110 429 SENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCG------LSTQFVLTFSDG 482 (518)
Q Consensus 429 ~d~wE~atL~IrRegY~IK~~~~~~~I~EKfs~~~~IkIp~g------~~~qfvI~~sdG 482 (518)
.+.|+ ..|-|.=.||.+...++.+.|.==||-...++||.| .+++.+|.+.|-
T Consensus 80 t~Gf~-~~L~lvGvgyrv~~~g~~l~l~LG~sh~i~~~Ip~gv~v~~~~~t~I~i~G~dk 138 (178)
T PRK05498 80 TEGFE-KKLEIVGVGYRAQVKGKKLNLSLGYSHPVEYEIPEGITVEVPKPTEIVVKGIDK 138 (178)
T ss_pred CCCeE-EEEEEEeEEEEEEEeCCeEEEEecCCEEEEEECCCCeEEEeCCCCEEEEEECCH
Confidence 45666 677777888988887666777666787788888875 345566666654
No 64
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=24.35 E-value=3.1e+02 Score=22.95 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=47.1
Q ss_pred ccccccceEEEEeecceEEEeCCCcceeeee----cC-CCceeEecC---CCcceEEEEecCCceeeeecCCCCCchhhH
Q 010110 428 SSENWEQATLILRRSIYRIKIDSTEAIIEER----FP-KEVSIKVPC---GLSTQFVLTFSDGSSYPFSTYNVRMRDTLV 499 (518)
Q Consensus 428 ~~d~wE~atL~IrRegY~IK~~~~~~~I~EK----fs-~~~~IkIp~---g~~~qfvI~~sdG~e~~Lr~~n~~~RD~iV 499 (518)
+.-.|..-.++|+.....+-.+......... .+ ..+.|.+.. .++.-|.|...+|..+.|.+.+....+.=|
T Consensus 19 ~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi 98 (104)
T cd01253 19 SNRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVASDYTKKKHVFRLRLPDGAEFLFQAPDEEEMSSWV 98 (104)
T ss_pred CCCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecCCcccCceEEEEEecCCCEEEEECCCHHHHHHHH
Confidence 3568999999999877666554221100000 00 134444542 466789998999999999998876655544
Q ss_pred HHHH
Q 010110 500 LTMR 503 (518)
Q Consensus 500 LTlR 503 (518)
-.||
T Consensus 99 ~aL~ 102 (104)
T cd01253 99 RALK 102 (104)
T ss_pred HHHh
Confidence 4443
No 65
>PRK14160 heat shock protein GrpE; Provisional
Probab=24.15 E-value=6.1e+02 Score=25.61 Aligned_cols=63 Identities=10% Similarity=0.176 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHhhhc--CCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 010110 139 RYFFMSSMLGLLADY--GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 211 (518)
Q Consensus 139 Rs~fvssLLpLLaEY--~lqP~v~dAqSIvs~vKvL~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~q~p 211 (518)
..-|+..|||.+--+ -|.- ..+..+|+.+|+-.+++|..=|. ..-|+++. | .| .++|+.|+.-
T Consensus 110 ~e~~~~~LLpVlDnLerAl~~-~~~~~~l~~Gv~mi~kql~~vL~--k~GVe~I~--~---~G--~FDP~~HEAv 174 (211)
T PRK14160 110 CEDVLKELLPVLDNLERAAAV-EGSVEDLKKGIEMTVKQFKTSLE--KLGVEEIS--T---EG--EFDPNLHNAV 174 (211)
T ss_pred HHHHHHHHhhHHhHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHH--HCCCEEeC--C---CC--CCChHHhcee
Confidence 356899999998877 2321 24557899999999999888774 33455543 2 23 4788777643
No 66
>PRK14151 heat shock protein GrpE; Provisional
Probab=24.01 E-value=6.8e+02 Score=24.38 Aligned_cols=64 Identities=11% Similarity=0.179 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhhcC--CC--CCcc-cchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 010110 140 YFFMSSMLGLLADYG--LW--PHVT-NASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 211 (518)
Q Consensus 140 s~fvssLLpLLaEY~--lq--P~v~-dAqSIvs~vKvL~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~q~p 211 (518)
.-|+..|||.+--+. |. ++-. ...+|+.+|+-.+++|..-|. ..-|+++. ..| ..++|+.|+--
T Consensus 70 ~~~~~~LLpv~DnlerAl~~~~~~~~~~~~~~~Gv~mi~k~l~~~L~--k~Gv~~i~-~~G-----~~FDP~~HEAv 138 (176)
T PRK14151 70 EKFAGDLLPVVDSLERGLELSSADDEAIKPMREGVELTLKMFQDTLK--RYQLEAVD-PHG-----EPFNPEHHQAM 138 (176)
T ss_pred HHHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHH--HCCCEEeC-CCC-----CCCCHHHhhcc
Confidence 468899999988772 22 2222 247899999999999988774 44555555 223 24667666543
No 67
>PRK11281 hypothetical protein; Provisional
Probab=23.82 E-value=2.1e+02 Score=35.04 Aligned_cols=61 Identities=26% Similarity=0.317 Sum_probs=44.9
Q ss_pred hhhhhHHHHhhccHHHHHHHHHHHHHHhh------------hh---------hhhhcchhhhHHHHhHHHHHHhHHhhHH
Q 010110 49 REAMELYSRARMQKEEIHSLRQQIAVACL------------KE---------LQLQNEKYTLERKVSELRMAIDEKQNEA 107 (518)
Q Consensus 49 ~~~~~l~~~~r~~eeeI~~Lrk~Lad~s~------------Ke---------~Qll~EK~vLErriA~mR~A~DqqQqdl 107 (518)
..+.++|.++..++++...|+++|++|-- |+ ..-++. ..||.++++..-.-.+.|.+|
T Consensus 66 ~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl-~qLEq~L~q~~~~Lq~~Q~~L 144 (1113)
T PRK11281 66 EQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSL-RQLESRLAQTLDQLQNAQNDL 144 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999888531 21 111122 349999999988888888888
Q ss_pred HHH
Q 010110 108 ITS 110 (518)
Q Consensus 108 vda 110 (518)
-++
T Consensus 145 a~~ 147 (1113)
T PRK11281 145 AEY 147 (1113)
T ss_pred HHH
Confidence 776
No 68
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=23.33 E-value=75 Score=32.93 Aligned_cols=41 Identities=29% Similarity=0.524 Sum_probs=28.6
Q ss_pred HhhHHHHH-HHHHHHHh---hhhHhhhhhhhh------------hhhhhhhh--hHHHH
Q 010110 103 KQNEAITS-ALNELARR---KGVLEENLKLAH------------DLKVAEDE--RYFFM 143 (518)
Q Consensus 103 qQqdlvda-AsKaLsyR---q~iiEENiRLty------------alq~aeqE--Rs~fv 143 (518)
-|.++|++ .+++|..| -+++-+++-+|| +-|+|||| |.-||
T Consensus 141 TqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEFt~AvE~KQVAQQEAErarFv 199 (271)
T KOG3083|consen 141 TQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEFTEAVEAKQVAQQEAERARFV 199 (271)
T ss_pred hhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677776 67777777 456777777765 56888885 67775
No 69
>PF08838 DUF1811: Protein of unknown function (DUF1811); InterPro: IPR014938 This entry consists uncharacterised bacterial proteins. Some of the proteins are annotated as being transcriptional regulators (see Q4MQL7 from SWISSPROT, Q65MA2 from SWISSPROT). The structure of one of the proteins has revealed a beta-barrel like structure with helix-turn-helix like motif. ; PDB: 2YXY_A 1SF9_A.
Probab=22.76 E-value=86 Score=28.61 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=24.9
Q ss_pred ccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHh
Q 010110 60 MQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVS 94 (518)
Q Consensus 60 ~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA 94 (518)
|-++||..|+.+-..| ...-+.||--|||||++
T Consensus 11 EL~~Ei~~L~ekarKA--Eq~G~~nE~aV~erK~~ 43 (102)
T PF08838_consen 11 ELRQEIARLKEKARKA--EQLGIVNEYAVYERKII 43 (102)
T ss_dssp HHHHHHHHHHHHHHHH--HHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHcCCccHHHHHHHHHH
Confidence 4467888888886544 45568899999999985
No 70
>TIGR01076 sortase_fam LPXTG-site transpeptidase (sortase) family protein. of an LPXTG motif to the cell wall. It also includes a protein required for correct assembly of an LPXTG-containing fimbrial protein, a set of homologous proteins from Streptococcus pneumoniae, in which LPXTG proteins are common. However, related proteins are found in Bacillus subtilis and Methanobacterium thermoautotrophicum, in which LPXTG-mediated cell wall attachment is not known.
Probab=22.68 E-value=81 Score=28.45 Aligned_cols=51 Identities=24% Similarity=0.339 Sum_probs=34.5
Q ss_pred eecccCC----CcceeeeccccCCceeeeeEEEEEccCCceeeecCCC-CCceeeec
Q 010110 314 IIGEATP----GEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGAT-NPEYVVTA 365 (518)
Q Consensus 314 I~Gda~p----G~~L~acG~~inGTtlC~FQWvRhleDGt~~~IeGA~-~p~Y~vTA 365 (518)
+.|-+.| ++-..-.||... .....|..+..|+.|..-+|.... ..+|.||+
T Consensus 30 ~~~s~~p~~g~~gN~vIaGH~~~-~~~~~F~~L~~l~~GD~i~v~~~~~~~~Y~V~~ 85 (136)
T TIGR01076 30 LEGTSLPVGGENTRIVITGHRGL-PTATMFTNLDKLKKGDMLYLHVGNEVLTYQVTS 85 (136)
T ss_pred ccCCcCcccCCCCeEEEEecCCC-CCCCccCCHHHCCCCCEEEEEECCcEEEEEEEE
Confidence 3444555 345666778754 345799999999999998877443 45777765
No 71
>PRK14141 heat shock protein GrpE; Provisional
Probab=21.82 E-value=8.1e+02 Score=24.68 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHhhhcC--CC--CC------cccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCC
Q 010110 139 RYFFMSSMLGLLADYG--LW--PH------VTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRH 208 (518)
Q Consensus 139 Rs~fvssLLpLLaEY~--lq--P~------v~dAqSIvs~vKvL~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~ 208 (518)
..-|+..|||.+--+. |. +. -.+..+|+.+|+-.+++|..=|. ...|+++. +.| ..++|..|
T Consensus 80 ~~~~~~dLLpViDnLerAl~~~~~~~~~~~~~~~~~l~eGv~mi~k~l~~vLe--k~GV~~I~-~~G-----e~FDP~~H 151 (209)
T PRK14141 80 IAGFARDMLSVSDNLRRALDAIPAEARAAADAGLKALIEGVEMTERAMLNALE--RHGVKKLD-PEG-----QKFDPNFH 151 (209)
T ss_pred HHHHHHHHhhhHhHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHHHH--HCCCEEEC-CCC-----CCCChHHh
Confidence 3468899999987762 21 21 12357899999999999888775 44555555 223 24666666
Q ss_pred CC
Q 010110 209 GV 210 (518)
Q Consensus 209 q~ 210 (518)
+.
T Consensus 152 EA 153 (209)
T PRK14141 152 QA 153 (209)
T ss_pred ce
Confidence 53
No 72
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=21.74 E-value=5.2e+02 Score=23.42 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhh
Q 010110 62 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKL 128 (518)
Q Consensus 62 eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~A~DqqQqdlvdaAsKaLsyRq~iiEENiRL 128 (518)
=++|..||+.+..+-..=.++..+.......+...+-.+..+...|-..-+.+-..+.|+-+.|=-|
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lL 124 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLL 124 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777666666666677777777777777777666666666666666666666666433
No 73
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.62 E-value=2.8e+02 Score=29.30 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=25.7
Q ss_pred ccchhhhhHHHHhhccHHHHHHHHHHHHH
Q 010110 46 FQDREAMELYSRARMQKEEIHSLRQQIAV 74 (518)
Q Consensus 46 ~~d~~~~~l~~~~r~~eeeI~~Lrk~Lad 74 (518)
|-|+.--+-+++..--+|||..|++.|+.
T Consensus 215 ~~D~~~~dh~V~i~~lkeeia~Lkk~L~q 243 (305)
T KOG3990|consen 215 FGDRDPGDHMVKIQKLKEEIARLKKLLHQ 243 (305)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhh
Confidence 66888888889999999999999999985
No 74
>PRK04325 hypothetical protein; Provisional
Probab=21.56 E-value=2.1e+02 Score=24.11 Aligned_cols=32 Identities=25% Similarity=0.522 Sum_probs=22.9
Q ss_pred hHHHHhH--HHHHHhHHhhHHHHHHHHHHHHhhhhHh
Q 010110 89 LERKVSE--LRMAIDEKQNEAITSALNELARRKGVLE 123 (518)
Q Consensus 89 LErriA~--mR~A~DqqQqdlvdaAsKaLsyRq~iiE 123 (518)
+|.||.+ +|+|| |++.|+.=++++..=|..|.
T Consensus 7 ~e~Ri~~LE~klAf---QE~tIe~LN~vv~~Qq~~I~ 40 (74)
T PRK04325 7 MEDRITELEIQLAF---QEDLIDGLNATVARQQQTLD 40 (74)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 5555554 46676 78899999998887775553
No 75
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=21.53 E-value=78 Score=30.59 Aligned_cols=119 Identities=13% Similarity=0.110 Sum_probs=64.9
Q ss_pred ecCCCCCccceeeeecccCCccccCccchHHHHHHHH--hcce----EEEEEe-----ecCcc--------------ccc
Q 010110 378 PMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYIS--RGHA----TFSVLM-----LMDSS--------------ENW 432 (518)
Q Consensus 378 PmDd~grkGElVk~~aNd~~kI~cDpeMq~~I~~~l~--~G~A----sf~V~l-----l~~~~--------------d~w 432 (518)
+.+-+--.|.+++.|+-=..-+..+|-|+..|..-.. .... .+.|.+ ..+.. ..|
T Consensus 46 s~~~N~~~gg~~R~F~~l~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~i~vHq~Ri~a~~~~~g~ptPEGiH~DG~d~ 125 (195)
T PF10014_consen 46 SKEYNPLNGGVVRHFEPLEDEFLSNPVLQALLRFDAEIFGWDEDSSEPWHIGVHQIRIIATPDEPGEPTPEGIHRDGVDF 125 (195)
T ss_dssp ESSTT-SS-CEEE---B--HHHHTSHHHHHHHHHHHHHHHCCS-GGGEEEEEEEEEEEETTTS--B--STTSSB--SSSE
T ss_pred ccccchhcCCeeEECCcCChhHhcCHHHHHHHHHHHHHhcccccCCCCEEEEEEEEEEEEecCccCCcCCCCccCCCCCE
Confidence 3333444688999998877778899999998876632 2222 444331 11110 134
Q ss_pred cceEEEEeecceEEEeCCCcceeeeecCCCceeEecCCCcceEEEEecCCceeeeec---C---CCCCchhhHHHH
Q 010110 433 EQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVLTFSDGSSYPFST---Y---NVRMRDTLVLTM 502 (518)
Q Consensus 433 E~atL~IrRegY~IK~~~~~~~I~EKfs~~~~IkIp~g~~~qfvI~~sdG~e~~Lr~---~---n~~~RD~iVLTl 502 (518)
- ++++|.|.+. .|+...|.+. ........---++.+++|+......|..++ . .+..||++|+|+
T Consensus 126 v-~~~li~r~Ni----~GG~s~i~~~-~~~~~~~~~l~~p~d~l~~~D~~~~H~vtpI~~~~~~~~g~RDvlvitf 195 (195)
T PF10014_consen 126 V-FIHLINRHNI----EGGESQIYDN-DKEILFFFTLLEPGDTLLVDDRRVWHYVTPIRPVDPSRPGYRDVLVITF 195 (195)
T ss_dssp E-EEEEEEEESE----EE--EEEEET-TSSEEEEE---STTEEEEEETTTEEEEE--EEES-TT---EEEEEEEEE
T ss_pred E-EEEEEcCCCc----cCceEEEEeC-CCCcceEEEecCCCCEEEEeCCcceECCCceecCCCCCcEEEEEEEEeC
Confidence 4 6777888665 3444555222 233555666789999999999999998875 2 246799999874
No 76
>PRK14143 heat shock protein GrpE; Provisional
Probab=21.43 E-value=8.8e+02 Score=24.81 Aligned_cols=63 Identities=21% Similarity=0.333 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHhhhc-----CCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCC
Q 010110 139 RYFFMSSMLGLLADY-----GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHG 209 (518)
Q Consensus 139 Rs~fvssLLpLLaEY-----~lqP~v~dAqSIvs~vKvL~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~q 209 (518)
..-|+..|||.+--+ .+.|.-.++.+|+.+++-++++|..-|. ..-|+++. ..| ..|+|+.|.
T Consensus 116 ~~~~~~~lLpV~DnLerAl~~~~~~~~~~~~l~~Gve~i~k~l~~~L~--k~GV~~i~-~~G-----~~FDP~~HE 183 (238)
T PRK14143 116 KCNTLSEILPVVDNFERARQQLKPEGEEAQALHRSYQGLYKQLVDVLK--RLGVSPMR-VVG-----QEFDPNLHE 183 (238)
T ss_pred HHHHHHHHHHHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHH--HCCCeeeC-CCC-----CCCChHHhh
Confidence 456899999998777 2335444568899999999998877664 33444444 122 235666664
No 77
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=21.37 E-value=1.7e+02 Score=28.12 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=37.9
Q ss_pred cccccceEEEEeecceEEEeCCCcceeeeecCCCceeEecCC------CcceEEEEecCC
Q 010110 429 SENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCG------LSTQFVLTFSDG 482 (518)
Q Consensus 429 ~d~wE~atL~IrRegY~IK~~~~~~~I~EKfs~~~~IkIp~g------~~~qfvI~~sdG 482 (518)
.+.|+ ..|-|-=.||.+...++.+.|.==||-...+.||.| .+++.+|.+.|-
T Consensus 79 t~Gf~-~~L~lvGvgyrv~~~g~~l~l~LG~sh~i~~~Ip~~v~v~~~~~t~I~i~G~dk 137 (175)
T TIGR03654 79 SEGFE-KKLEIVGVGYRAQLQGKKLNLSLGYSHPVEYEIPEGITVEVPKPTEIVVKGIDK 137 (175)
T ss_pred ccCcE-EEEEEEEEEEEEEEeCCeEEEEecCceeEEEECCCCeEEEeCCCCEEEEEECCH
Confidence 45666 677788888988887766777777787788888876 344566666654
No 78
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=21.34 E-value=2e+02 Score=28.17 Aligned_cols=107 Identities=20% Similarity=0.291 Sum_probs=59.8
Q ss_pred ccccchhhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHH-----HhHHhhHHHHHHHHHHHHh
Q 010110 44 ISFQDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMA-----IDEKQNEAITSALNELARR 118 (518)
Q Consensus 44 ~~~~d~~~~~l~~~~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~A-----~DqqQqdlvdaAsKaLsyR 118 (518)
.-|.+.|-.+|-.-...-||||..||.=|+. | ||+.++||=. +.+-+|++-..
T Consensus 24 ~~LsEeE~eeLr~EL~KvEeEI~TLrqvL~a---K-----------er~~~eLKrkLGit~l~elkqnlskg-------- 81 (162)
T PF04201_consen 24 EGLSEEEREELRSELAKVEEEIQTLRQVLAA---K-----------ERHCAELKRKLGITPLSELKQNLSKG-------- 81 (162)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-----------HHhHHHHHHHHCCchHHHHHHHHHHH--------
Confidence 4567777777877777789999999998874 3 5666666532 44555555322
Q ss_pred hhhHhhhhhhhhhhhhhhhhhHHHHHHHHHHhhhc--CCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhccc
Q 010110 119 KGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADY--GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDL 190 (518)
Q Consensus 119 q~iiEENiRLtyalq~aeqERs~fvssLLpLLaEY--~lqP~v~dAqSIvs~vKvL~~~Lq~kl~~~e~klke~ 190 (518)
..|+.-+.+.+ .|-.+..++++=--+... +++= --.|+-+.+|+......+|.-
T Consensus 82 ----~~~vq~S~aY~--gqKTsaa~s~~g~~i~~Kl~dmrn------------S~tFKSfEeKVg~a~~~vK~k 137 (162)
T PF04201_consen 82 ----WHDVQDSNAYK--GQKTSAAFSSVGSAISRKLGDMRN------------SPTFKSFEEKVGSAYSNVKSK 137 (162)
T ss_pred ----hHhhhchhHHH--HHHHHHHHHHHHHHHHHHHHHHhc------------chHHHhHHHHhccchhhhhhc
Confidence 13555555554 333444444332222211 1100 024777777777755555543
No 79
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=21.25 E-value=1.9e+02 Score=24.28 Aligned_cols=43 Identities=26% Similarity=0.387 Sum_probs=29.5
Q ss_pred hhccHHHHHHHHHHHHHHhhhhhhh------hcchhhhHHHHhHHHHHH
Q 010110 58 ARMQKEEIHSLRQQIAVACLKELQL------QNEKYTLERKVSELRMAI 100 (518)
Q Consensus 58 ~r~~eeeI~~Lrk~Lad~s~Ke~Ql------l~EK~vLErriA~mR~A~ 100 (518)
++.|=.+|.+.+++|.-.+--+-.| -+|-+.+++|+.+||+-|
T Consensus 6 L~~QLd~I~~~K~~l~ik~~H~Ekl~kitK~p~El~~i~~kl~~~R~~F 54 (62)
T PF06034_consen 6 LTQQLDEINQMKRQLTIKSQHWEKLKKITKNPKELQEIEKKLQELRQNF 54 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Confidence 3556667777777776655443333 245577999999999987
No 80
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=20.83 E-value=1.3e+02 Score=25.60 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHH
Q 010110 61 QKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSEL 96 (518)
Q Consensus 61 ~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~m 96 (518)
..+++..|+++|.++--+-..+.+++.+++.+++.|
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455777777777777777777778888888887754
No 81
>cd00354 FBPase Fructose-1,6-bisphosphatase, an enzyme that catalyzes the hydrolysis of fructose-1,6-biphosphate into fructose-6-phosphate and is critical in gluconeogenesis pathway. The alignment model also includes chloroplastic FBPases and sedoheptulose-1,7-biphosphatases that play a role in pentose phosphate pathway (Calvin cycle).
Probab=20.63 E-value=1.5e+02 Score=31.12 Aligned_cols=79 Identities=22% Similarity=0.406 Sum_probs=53.5
Q ss_pred CCCcceeeeccccCCceeeeeEEEEEccCCceeeecCCCCCceeeeccccCceEEEEEEecCCCCCccceeeeec-ccCC
Q 010110 319 TPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFA-NDQN 397 (518)
Q Consensus 319 ~pG~~L~acG~~inGTtlC~FQWvRhleDGt~~~IeGA~~p~Y~vTADDVd~liAvec~PmDd~grkGElVk~~a-Nd~~ 397 (518)
-||+++.|.||-+=|.+.... =.+.+|...|.=....=+|++|..++ ++ |- ++ ++|+ |++|
T Consensus 138 q~G~~~vAAgy~lYGp~T~lv---~t~g~gv~~ftld~~~g~f~lt~~~~------~i-p~--~~------~~ys~n~~n 199 (315)
T cd00354 138 QPGRNQVAAGYALYGPSTMLV---LTLGQGVHGFTLDPSLGEFILTHPNV------KI-PK--KG------KIYSINEGN 199 (315)
T ss_pred CcchhhheEEEEEEcCceEEE---EEeCCceEEEEEcCCCCeEEEecCCc------ee-CC--CC------CEECCCCcc
Confidence 489999999999988765543 23346766555444344677776552 22 21 22 6788 6566
Q ss_pred ccccCccchHHHHHHHHh
Q 010110 398 KIKCDLGMQSEIDAYISR 415 (518)
Q Consensus 398 kI~cDpeMq~~I~~~l~~ 415 (518)
.=.+|+.+|..|+..+..
T Consensus 200 ~~~w~~~~~~yi~~~~~~ 217 (315)
T cd00354 200 YRYWDEPVKKYIDDCKAG 217 (315)
T ss_pred hhcCCHHHHHHHHHHhcc
Confidence 667999999999988764
No 82
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=20.59 E-value=3.5e+02 Score=29.71 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=30.1
Q ss_pred HHhHHHHHHhHHhhHH-------HHHHHHHHHHhhhhHhhhhhhhhhhhhh
Q 010110 92 KVSELRMAIDEKQNEA-------ITSALNELARRKGVLEENLKLAHDLKVA 135 (518)
Q Consensus 92 riA~mR~A~DqqQqdl-------vdaAsKaLsyRq~iiEENiRLtyalq~a 135 (518)
++..||.+|+-+|-.+ +..+----.||+-.||-++-.|+.+.--
T Consensus 142 kL~~kr~q~~~~q~~l~k~~k~l~e~~~~l~a~re~fL~~~~~~~~~irq~ 192 (377)
T KOG2896|consen 142 KLEDKRQQFNASQVKLQKQLKSLIELRNELVAKRELFLEQRIQDTFKIRQD 192 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHhHHHhhhhhhhcc
Confidence 4566888888776543 4445455578888888888887776543
No 83
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=20.35 E-value=4.4e+02 Score=24.21 Aligned_cols=79 Identities=24% Similarity=0.242 Sum_probs=30.3
Q ss_pred hhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhH--HHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhh
Q 010110 52 MELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLE--RKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLA 129 (518)
Q Consensus 52 ~~l~~~~r~~eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLE--rriA~mR~A~DqqQqdlvdaAsKaLsyRq~iiEENiRLt 129 (518)
.+|-.|++.|++++.+++.+|.+..-+=.+| .|+.++ .||+++|--.-+.++-++.-++| ++|+. +..
T Consensus 33 ~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L--~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~-----~eilr---~~g 102 (141)
T PF13874_consen 33 EDLKKRVEAQEEEIAQHRERLKEINDKLEEL--QKHDLETSARLEEARRRHQELSHRLLRVLRK-----QEILR---NRG 102 (141)
T ss_dssp -------------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH---H--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH---HcC
Confidence 4677899999999999999998776553344 444443 56666665555555555544433 22322 234
Q ss_pred hhhhhhhhhhH
Q 010110 130 HDLKVAEDERY 140 (518)
Q Consensus 130 yalq~aeqERs 140 (518)
|+|+..|.+..
T Consensus 103 ~~l~~eEe~L~ 113 (141)
T PF13874_consen 103 YALSPEEEELR 113 (141)
T ss_dssp -----------
T ss_pred CCCCHHHHHHH
Confidence 66655555543
No 84
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=20.22 E-value=1.1e+03 Score=27.12 Aligned_cols=8 Identities=25% Similarity=0.688 Sum_probs=3.6
Q ss_pred ccceeecc
Q 010110 310 EGFQIIGE 317 (518)
Q Consensus 310 egl~I~Gd 317 (518)
.|+.|.-.
T Consensus 1071 ~~~~~~~~ 1078 (1179)
T TIGR02168 1071 AGIEIFAQ 1078 (1179)
T ss_pred cCceEEEe
Confidence 44544433
No 85
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=20.18 E-value=3.6e+02 Score=26.91 Aligned_cols=43 Identities=28% Similarity=0.392 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHh
Q 010110 62 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQ 104 (518)
Q Consensus 62 eeeI~~Lrk~Lad~s~Ke~Qll~EK~vLErriA~mR~A~DqqQ 104 (518)
+.||..||+.|.+.+..=+++.-|.-.|..-+.++|.-|....
T Consensus 53 e~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~ 95 (312)
T PF00038_consen 53 EEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEEL 95 (312)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 6788888888888888878888888888888888887777653
No 86
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=20.11 E-value=1.4e+02 Score=28.68 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=27.4
Q ss_pred ceeeeccccCCceeeeeEEEEEccCCceeeecCCCC--Cceeeec
Q 010110 323 KLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATN--PEYVVTA 365 (518)
Q Consensus 323 ~L~acG~~inGTtlC~FQWvRhleDGt~~~IeGA~~--p~Y~vTA 365 (518)
...-.||-. | .|-.+.+|+-|..-+|....+ -.|.||.
T Consensus 92 n~VIAGHrd--t---~F~~L~~L~~GD~I~v~~~~g~~~~Y~V~~ 131 (174)
T TIGR03784 92 NSVIAGHRD--T---HFAFLQELRPGDVIRLQTPDGQWQSYQVTA 131 (174)
T ss_pred cEEEEeeCC--c---cCCChhhCCCCCEEEEEECCCeEEEEEEeE
Confidence 445566743 3 599999999999988886654 3587764
No 87
>PRK02224 chromosome segregation protein; Provisional
Probab=20.01 E-value=8.9e+02 Score=27.91 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=17.1
Q ss_pred EecCCceeeeecCCCCCchhhHHHHHHHHhhhh
Q 010110 478 TFSDGSSYPFSTYNVRMRDTLVLTMRMLQGKAL 510 (518)
Q Consensus 478 ~~sdG~e~~Lr~~n~~~RD~iVLTlR~F~~~Al 510 (518)
...+|........+..+|..+.|-||+-.-+++
T Consensus 770 ~~~~g~~~~~~~lS~G~~~~~~lalr~a~~~~~ 802 (880)
T PRK02224 770 YQKDGEPLEPEQLSGGERALFNLSLRCAIYRLL 802 (880)
T ss_pred eCCCCCccChhhcCccHHHHHHHHHHHHHHHHh
Confidence 334555444444555556555555555554443
Done!