Query 010111
Match_columns 518
No_of_seqs 254 out of 2567
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 21:10:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010111.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010111hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 4.7E-72 1E-76 506.2 34.1 388 34-493 67-454 (476)
2 KOG0331 ATP-dependent RNA heli 100.0 1E-69 2.2E-74 524.5 32.3 360 34-459 97-465 (519)
3 KOG0338 ATP-dependent RNA heli 100.0 1.4E-68 3.1E-73 498.5 30.4 398 23-493 182-583 (691)
4 KOG0350 DEAD-box ATP-dependent 100.0 6.9E-67 1.5E-71 486.6 32.8 463 12-503 111-600 (620)
5 KOG0345 ATP-dependent RNA heli 100.0 4.2E-65 9.1E-70 471.6 34.1 351 34-447 12-369 (567)
6 COG0513 SrmB Superfamily II DN 100.0 4.3E-65 9.3E-70 515.3 37.0 363 22-457 29-396 (513)
7 KOG0343 RNA Helicase [RNA proc 100.0 7.3E-65 1.6E-69 477.9 31.6 353 21-444 68-424 (758)
8 KOG0342 ATP-dependent RNA heli 100.0 1.6E-64 3.4E-69 471.1 30.1 352 34-451 88-446 (543)
9 KOG0340 ATP-dependent RNA heli 100.0 2.9E-64 6.2E-69 450.4 29.9 363 21-456 6-375 (442)
10 KOG0333 U5 snRNP-like RNA heli 100.0 3.9E-64 8.4E-69 470.6 29.4 393 17-458 240-640 (673)
11 PTZ00110 helicase; Provisional 100.0 1.1E-62 2.3E-67 502.9 38.9 371 16-459 124-501 (545)
12 PRK04837 ATP-dependent RNA hel 100.0 2.2E-62 4.7E-67 491.3 38.0 366 18-455 4-375 (423)
13 KOG0328 Predicted ATP-dependen 100.0 2E-63 4.4E-68 431.4 25.6 363 20-457 25-388 (400)
14 KOG0336 ATP-dependent RNA heli 100.0 8.4E-63 1.8E-67 448.2 25.2 376 17-471 214-595 (629)
15 PLN00206 DEAD-box ATP-dependen 100.0 6.3E-61 1.4E-65 488.8 38.3 375 18-472 117-499 (518)
16 KOG0346 RNA helicase [RNA proc 100.0 1.9E-61 4.1E-66 443.5 28.2 390 34-489 25-461 (569)
17 PRK04537 ATP-dependent RNA hel 100.0 1.7E-60 3.6E-65 488.2 37.4 368 17-455 4-377 (572)
18 KOG0348 ATP-dependent RNA heli 100.0 2.9E-61 6.4E-66 452.1 28.3 385 17-453 126-565 (708)
19 PRK11776 ATP-dependent RNA hel 100.0 3.4E-60 7.5E-65 480.5 37.5 359 22-456 4-363 (460)
20 PRK10590 ATP-dependent RNA hel 100.0 3.1E-60 6.8E-65 478.4 36.2 355 34-456 7-366 (456)
21 PRK11192 ATP-dependent RNA hel 100.0 4.1E-60 8.9E-65 477.2 36.7 355 34-456 7-366 (434)
22 PRK11634 ATP-dependent RNA hel 100.0 2.3E-59 4.9E-64 482.1 41.1 353 34-455 12-365 (629)
23 KOG0347 RNA helicase [RNA proc 100.0 2.8E-61 6.2E-66 453.6 24.3 394 16-480 175-606 (731)
24 KOG0335 ATP-dependent RNA heli 100.0 2.2E-60 4.8E-65 451.4 28.0 370 34-473 80-469 (482)
25 KOG0326 ATP-dependent RNA heli 100.0 3.3E-61 7.1E-66 424.6 19.6 353 34-456 91-443 (459)
26 PRK01297 ATP-dependent RNA hel 100.0 1.6E-58 3.4E-63 469.4 39.3 359 34-457 93-457 (475)
27 KOG0339 ATP-dependent RNA heli 100.0 3E-57 6.5E-62 422.3 28.9 369 17-459 218-592 (731)
28 KOG0341 DEAD-box protein abstr 100.0 1.3E-58 2.8E-63 418.2 16.7 381 5-460 152-547 (610)
29 PTZ00424 helicase 45; Provisio 100.0 8.7E-56 1.9E-60 443.1 38.2 353 34-455 34-387 (401)
30 KOG0332 ATP-dependent RNA heli 100.0 1.1E-54 2.3E-59 391.3 23.2 362 20-456 88-458 (477)
31 KOG0334 RNA helicase [RNA proc 100.0 2.3E-54 5E-59 438.5 27.7 370 16-458 359-736 (997)
32 TIGR03817 DECH_helic helicase/ 100.0 2.8E-52 6.2E-57 437.9 33.9 355 35-456 21-402 (742)
33 KOG0337 ATP-dependent RNA heli 100.0 2.7E-52 5.9E-57 381.4 25.2 396 21-490 20-427 (529)
34 KOG0344 ATP-dependent RNA heli 100.0 2E-52 4.4E-57 399.4 24.6 377 18-459 128-512 (593)
35 KOG0327 Translation initiation 100.0 2.5E-52 5.4E-57 379.5 22.9 358 20-453 24-381 (397)
36 KOG4284 DEAD box protein [Tran 100.0 3.8E-51 8.3E-56 391.5 22.6 340 35-444 32-381 (980)
37 TIGR00614 recQ_fam ATP-depende 100.0 3.9E-49 8.5E-54 398.9 32.1 333 44-455 5-343 (470)
38 PLN03137 ATP-dependent DNA hel 100.0 2.9E-48 6.4E-53 404.1 37.5 396 35-510 444-852 (1195)
39 PRK11057 ATP-dependent DNA hel 100.0 8.4E-48 1.8E-52 398.9 35.8 380 35-511 9-393 (607)
40 PRK13767 ATP-dependent helicas 100.0 4.8E-46 1E-50 398.7 35.9 343 35-440 18-396 (876)
41 PRK02362 ski2-like helicase; P 100.0 7.9E-47 1.7E-51 401.6 29.3 336 35-443 8-398 (737)
42 TIGR01389 recQ ATP-dependent D 100.0 4.2E-46 9.1E-51 387.8 34.0 329 42-448 4-337 (591)
43 COG1201 Lhr Lhr-like helicases 100.0 2.5E-44 5.5E-49 367.7 31.5 340 34-441 7-361 (814)
44 PRK00254 ski2-like helicase; P 100.0 2.3E-44 5E-49 381.8 31.6 332 35-443 8-389 (720)
45 TIGR00580 mfd transcription-re 100.0 3.5E-43 7.6E-48 372.2 34.5 327 36-442 437-770 (926)
46 TIGR02621 cas3_GSU0051 CRISPR- 100.0 4.5E-43 9.7E-48 360.7 30.4 330 39-441 4-390 (844)
47 PRK10917 ATP-dependent DNA hel 100.0 1.8E-42 3.9E-47 362.8 35.0 325 37-440 249-587 (681)
48 TIGR00643 recG ATP-dependent D 100.0 1.7E-42 3.8E-47 360.8 34.5 328 37-439 223-563 (630)
49 PRK01172 ski2-like helicase; P 100.0 5.5E-43 1.2E-47 369.9 29.7 341 35-454 8-388 (674)
50 KOG0329 ATP-dependent RNA heli 100.0 3.8E-44 8.3E-49 307.1 14.6 307 35-444 49-357 (387)
51 COG0514 RecQ Superfamily II DN 100.0 2.7E-42 5.8E-47 340.6 29.1 379 38-510 4-387 (590)
52 PRK09751 putative ATP-dependen 100.0 1.4E-41 3E-46 369.1 33.2 297 74-429 1-371 (1490)
53 PRK10689 transcription-repair 100.0 2.3E-41 5.1E-46 365.9 34.6 327 36-441 587-918 (1147)
54 COG1111 MPH1 ERCC4-like helica 100.0 2.4E-40 5.3E-45 311.9 30.9 324 48-443 13-482 (542)
55 PRK09401 reverse gyrase; Revie 100.0 4.6E-39 9.9E-44 348.9 32.8 335 38-429 68-431 (1176)
56 COG1202 Superfamily II helicas 100.0 1.3E-39 2.9E-44 309.1 22.3 347 24-442 191-553 (830)
57 PRK12898 secA preprotein trans 100.0 1.4E-38 3.1E-43 320.7 30.8 358 46-445 100-589 (656)
58 TIGR01970 DEAH_box_HrpB ATP-de 100.0 4.8E-39 1E-43 337.5 27.8 305 61-445 9-339 (819)
59 PHA02653 RNA helicase NPH-II; 100.0 4.2E-39 9E-44 330.0 25.3 325 50-451 160-523 (675)
60 COG1204 Superfamily II helicas 100.0 1.1E-38 2.4E-43 331.3 27.0 337 35-439 16-405 (766)
61 PRK11664 ATP-dependent RNA hel 100.0 1.1E-38 2.4E-43 335.6 26.3 305 60-444 11-341 (812)
62 KOG0349 Putative DEAD-box RNA 100.0 1.4E-38 3E-43 292.3 22.3 285 101-440 286-613 (725)
63 TIGR01054 rgy reverse gyrase. 100.0 2.7E-37 6E-42 335.6 36.2 317 37-413 65-408 (1171)
64 PHA02558 uvsW UvsW helicase; P 100.0 4.5E-38 9.7E-43 319.8 27.8 307 49-439 113-449 (501)
65 PRK14701 reverse gyrase; Provi 100.0 6.2E-38 1.3E-42 346.9 27.8 358 37-449 66-463 (1638)
66 PRK09200 preprotein translocas 100.0 3.5E-37 7.5E-42 317.3 31.2 371 46-457 75-560 (790)
67 TIGR03714 secA2 accessory Sec 100.0 5.2E-37 1.1E-41 312.9 30.8 372 46-457 67-556 (762)
68 TIGR01587 cas3_core CRISPR-ass 100.0 1.6E-37 3.5E-42 305.9 25.2 314 71-442 1-336 (358)
69 TIGR00963 secA preprotein tran 100.0 5.4E-36 1.2E-40 303.4 33.4 368 46-457 53-536 (745)
70 KOG0354 DEAD-box like helicase 100.0 8.3E-37 1.8E-41 305.0 25.1 340 35-444 47-531 (746)
71 COG1205 Distinct helicase fami 100.0 2.8E-36 6.1E-41 317.8 28.1 344 35-440 55-420 (851)
72 PRK13766 Hef nuclease; Provisi 100.0 4E-35 8.6E-40 316.2 33.9 324 48-444 13-481 (773)
73 TIGR00603 rad25 DNA repair hel 100.0 1.2E-35 2.6E-40 303.0 25.8 320 50-456 255-623 (732)
74 TIGR03158 cas3_cyano CRISPR-as 100.0 2.8E-34 6E-39 279.3 28.2 312 54-427 1-357 (357)
75 KOG0952 DNA/RNA helicase MER3/ 100.0 2.4E-34 5.2E-39 290.6 23.3 339 44-444 104-493 (1230)
76 COG1200 RecG RecG-like helicas 100.0 2.5E-33 5.3E-38 276.1 27.2 340 37-453 250-603 (677)
77 KOG0351 ATP-dependent DNA heli 100.0 1.6E-33 3.4E-38 294.6 23.6 339 38-456 252-603 (941)
78 KOG0352 ATP-dependent DNA heli 100.0 2.8E-33 6.1E-38 257.1 20.2 342 38-450 6-370 (641)
79 PRK04914 ATP-dependent helicas 100.0 3.6E-32 7.8E-37 287.2 31.1 138 317-456 478-617 (956)
80 PRK11131 ATP-dependent RNA hel 100.0 2.1E-32 4.6E-37 292.7 25.5 300 62-445 82-414 (1294)
81 PRK13104 secA preprotein trans 100.0 3.8E-31 8.2E-36 271.9 31.5 371 46-458 79-607 (896)
82 PRK09694 helicase Cas3; Provis 100.0 9.7E-31 2.1E-35 274.8 32.2 336 49-431 285-664 (878)
83 COG1061 SSL2 DNA or RNA helica 100.0 1.9E-31 4.1E-36 265.8 23.9 298 49-429 35-376 (442)
84 KOG0951 RNA helicase BRR2, DEA 100.0 1.9E-31 4.2E-36 272.9 24.0 346 35-444 296-704 (1674)
85 PRK05580 primosome assembly pr 100.0 1.4E-30 2.9E-35 272.1 29.4 320 50-442 144-549 (679)
86 PRK12904 preprotein translocas 100.0 6.3E-30 1.4E-34 262.8 29.9 368 46-457 78-592 (830)
87 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.3E-30 2.9E-35 280.0 24.2 320 45-445 59-407 (1283)
88 KOG0353 ATP-dependent DNA heli 100.0 1.6E-30 3.4E-35 235.8 20.4 335 35-445 78-470 (695)
89 KOG0947 Cytoplasmic exosomal R 100.0 4.9E-30 1.1E-34 256.7 24.3 349 45-487 293-757 (1248)
90 PRK12906 secA preprotein trans 100.0 1.6E-29 3.4E-34 258.8 25.8 370 46-457 77-572 (796)
91 COG1197 Mfd Transcription-repa 100.0 5.2E-29 1.1E-33 259.1 29.9 330 36-443 580-914 (1139)
92 PRK12899 secA preprotein trans 100.0 2.3E-28 5E-33 250.9 33.4 146 34-211 68-229 (970)
93 COG4581 Superfamily II RNA hel 100.0 4.4E-29 9.6E-34 259.6 23.7 324 40-443 110-538 (1041)
94 PRK11448 hsdR type I restricti 100.0 1.4E-28 3E-33 266.1 27.5 315 49-430 412-801 (1123)
95 TIGR00595 priA primosomal prot 100.0 1.5E-28 3.2E-33 247.8 26.0 294 73-439 1-378 (505)
96 PRK13107 preprotein translocas 100.0 6.6E-28 1.4E-32 247.3 28.8 371 46-458 79-611 (908)
97 COG4098 comFA Superfamily II D 100.0 8E-28 1.7E-32 215.9 23.7 309 50-443 97-417 (441)
98 cd00268 DEADc DEAD-box helicas 100.0 3.9E-28 8.5E-33 219.5 21.9 197 34-294 5-202 (203)
99 KOG0948 Nuclear exosomal RNA h 100.0 1.6E-28 3.4E-33 240.2 18.9 310 50-441 129-538 (1041)
100 KOG0950 DNA polymerase theta/e 100.0 5.4E-28 1.2E-32 243.8 19.7 355 35-455 207-621 (1008)
101 PLN03142 Probable chromatin-re 99.9 8.8E-26 1.9E-30 239.7 26.2 357 50-442 169-599 (1033)
102 PRK12900 secA preprotein trans 99.9 1.1E-24 2.3E-29 224.7 23.3 140 314-458 578-731 (1025)
103 TIGR01407 dinG_rel DnaQ family 99.9 9.1E-24 2E-28 227.9 31.6 401 33-442 229-814 (850)
104 PF00270 DEAD: DEAD/DEAH box h 99.9 7.3E-25 1.6E-29 192.2 16.8 148 52-226 1-148 (169)
105 TIGR00631 uvrb excinuclease AB 99.9 1.8E-22 3.9E-27 208.5 32.8 134 316-453 424-564 (655)
106 COG1203 CRISPR-associated heli 99.9 1.3E-23 2.8E-28 222.0 23.4 349 50-448 195-556 (733)
107 COG1643 HrpA HrpA-like helicas 99.9 2.2E-23 4.9E-28 216.1 23.3 306 61-444 57-389 (845)
108 COG1110 Reverse gyrase [DNA re 99.9 1.5E-22 3.2E-27 205.9 28.5 319 46-413 79-416 (1187)
109 COG0556 UvrB Helicase subunit 99.9 1E-22 2.2E-27 193.6 23.8 164 267-442 387-557 (663)
110 PRK05298 excinuclease ABC subu 99.9 9.6E-21 2.1E-25 197.4 36.7 122 317-442 429-557 (652)
111 KOG0385 Chromatin remodeling c 99.9 4E-22 8.8E-27 196.4 24.4 360 50-443 167-600 (971)
112 COG4096 HsdR Type I site-speci 99.9 8.4E-23 1.8E-27 204.6 19.4 303 49-429 164-525 (875)
113 TIGR00348 hsdR type I site-spe 99.9 7E-22 1.5E-26 206.7 27.3 308 50-429 238-634 (667)
114 KOG0922 DEAH-box RNA helicase 99.9 1.9E-22 4.2E-27 197.4 20.7 306 61-444 58-392 (674)
115 PRK12326 preprotein translocas 99.9 4.1E-21 9E-26 193.0 26.8 355 46-444 75-549 (764)
116 PRK07246 bifunctional ATP-depe 99.9 2.2E-20 4.7E-25 198.8 31.2 160 44-211 240-450 (820)
117 PRK13103 secA preprotein trans 99.9 5.4E-21 1.2E-25 196.9 25.2 370 46-457 79-610 (913)
118 KOG0926 DEAH-box RNA helicase 99.9 3.2E-20 6.9E-25 183.6 23.2 323 50-441 244-703 (1172)
119 COG1198 PriA Primosomal protei 99.9 3E-20 6.6E-25 190.1 23.7 326 50-443 198-604 (730)
120 PRK12903 secA preprotein trans 99.9 3.8E-20 8.3E-25 188.6 23.2 370 46-458 75-560 (925)
121 KOG0384 Chromodomain-helicase 99.9 4.5E-21 9.7E-26 198.0 16.5 373 49-444 369-813 (1373)
122 KOG0949 Predicted helicase, DE 99.9 1.1E-20 2.3E-25 190.6 18.1 149 47-225 509-660 (1330)
123 KOG1123 RNA polymerase II tran 99.9 1.7E-20 3.7E-25 176.6 17.7 311 49-444 301-655 (776)
124 KOG0923 mRNA splicing factor A 99.9 3.3E-20 7.2E-25 180.2 19.2 305 62-444 273-608 (902)
125 KOG0920 ATP-dependent RNA heli 99.8 5E-20 1.1E-24 190.4 20.5 311 63-444 182-546 (924)
126 KOG0387 Transcription-coupled 99.8 1.2E-19 2.6E-24 180.1 20.8 373 49-443 204-659 (923)
127 CHL00122 secA preprotein trans 99.8 7.6E-19 1.6E-23 180.4 26.2 131 46-210 73-209 (870)
128 KOG0389 SNF2 family DNA-depend 99.8 4E-19 8.7E-24 176.1 22.5 372 47-444 397-890 (941)
129 COG4889 Predicted helicase [Ge 99.8 2E-20 4.3E-25 186.5 12.0 351 47-439 158-583 (1518)
130 KOG0924 mRNA splicing factor A 99.8 2.1E-19 4.6E-24 175.0 18.3 296 67-442 369-697 (1042)
131 PRK12902 secA preprotein trans 99.8 3.4E-18 7.3E-23 175.2 27.3 131 46-210 82-218 (939)
132 TIGR03117 cas_csf4 CRISPR-asso 99.8 4.4E-18 9.5E-23 173.1 27.6 85 55-141 2-89 (636)
133 PRK08074 bifunctional ATP-depe 99.8 3.4E-18 7.5E-23 185.4 28.2 159 47-211 255-469 (928)
134 KOG0390 DNA repair protein, SN 99.8 8.1E-18 1.7E-22 171.4 24.0 81 359-439 619-702 (776)
135 KOG0392 SNF2 family DNA-depend 99.8 2.9E-18 6.3E-23 176.9 19.3 367 50-444 975-1456(1549)
136 smart00487 DEXDc DEAD-like hel 99.8 7.4E-18 1.6E-22 151.9 18.8 187 45-297 3-191 (201)
137 cd00079 HELICc Helicase superf 99.8 1.8E-18 4E-23 144.6 12.4 118 318-438 12-131 (131)
138 PRK11747 dinG ATP-dependent DN 99.8 1.1E-16 2.4E-21 168.4 26.3 90 47-140 23-120 (697)
139 KOG0953 Mitochondrial RNA heli 99.8 2.3E-17 5E-22 157.8 16.0 269 70-444 192-478 (700)
140 PF00271 Helicase_C: Helicase 99.8 2.1E-18 4.6E-23 129.5 7.0 77 351-430 2-78 (78)
141 KOG1000 Chromatin remodeling p 99.7 3E-16 6.6E-21 148.1 21.4 104 331-437 491-596 (689)
142 PRK12901 secA preprotein trans 99.7 3.3E-16 7E-21 162.5 23.6 181 270-458 567-761 (1112)
143 COG1199 DinG Rad3-related DNA 99.7 3.4E-16 7.4E-21 166.3 22.4 78 44-124 9-86 (654)
144 KOG4150 Predicted ATP-dependen 99.7 3.7E-17 7.9E-22 156.5 12.9 353 37-455 273-655 (1034)
145 KOG0925 mRNA splicing factor A 99.7 4.7E-16 1E-20 146.6 18.2 331 21-442 24-387 (699)
146 KOG0951 RNA helicase BRR2, DEA 99.7 2.3E-16 4.9E-21 163.5 15.5 318 52-448 1145-1500(1674)
147 TIGR00604 rad3 DNA repair heli 99.7 1.9E-15 4.1E-20 160.5 20.1 79 46-125 6-84 (705)
148 PF04851 ResIII: Type III rest 99.7 4E-16 8.8E-21 138.7 10.5 147 50-213 3-162 (184)
149 cd00046 DEXDc DEAD-like helica 99.7 5.7E-15 1.2E-19 125.1 16.8 122 70-216 1-122 (144)
150 KOG0388 SNF2 family DNA-depend 99.6 3.9E-14 8.4E-19 139.2 20.6 126 316-444 1026-1156(1185)
151 TIGR02562 cas3_yersinia CRISPR 99.6 3.1E-14 6.7E-19 148.7 20.6 338 51-431 409-881 (1110)
152 smart00490 HELICc helicase sup 99.6 2E-15 4.3E-20 114.7 7.6 81 347-430 2-82 (82)
153 KOG0386 Chromatin remodeling c 99.6 1.3E-14 2.8E-19 148.0 14.5 357 49-440 393-834 (1157)
154 PF06862 DUF1253: Protein of u 99.5 8.8E-12 1.9E-16 121.1 27.8 261 172-451 131-424 (442)
155 KOG0391 SNF2 family DNA-depend 99.5 1.3E-12 2.9E-17 134.7 20.6 109 332-443 1276-1388(1958)
156 KOG1002 Nucleotide excision re 99.5 9.1E-12 2E-16 118.2 20.9 120 333-457 639-762 (791)
157 PRK14873 primosome assembly pr 99.5 5.9E-12 1.3E-16 130.5 20.9 104 73-208 164-268 (665)
158 KOG4439 RNA polymerase II tran 99.4 1.8E-11 3.9E-16 120.9 21.5 104 331-437 745-851 (901)
159 smart00489 DEXDc3 DEAD-like he 99.4 7.8E-13 1.7E-17 124.7 11.7 79 46-125 5-85 (289)
160 smart00488 DEXDc2 DEAD-like he 99.4 7.8E-13 1.7E-17 124.7 11.7 79 46-125 5-85 (289)
161 COG0653 SecA Preprotein transl 99.4 2E-12 4.4E-17 132.9 14.1 357 46-444 77-547 (822)
162 COG0553 HepA Superfamily II DN 99.4 1.4E-11 3E-16 136.6 17.7 123 318-443 692-823 (866)
163 PF07652 Flavi_DEAD: Flaviviru 99.3 3.8E-11 8.2E-16 97.2 10.1 105 68-209 3-107 (148)
164 PF02399 Herpes_ori_bp: Origin 99.3 5.3E-10 1.1E-14 114.6 20.7 293 70-444 50-390 (824)
165 COG0610 Type I site-specific r 99.3 1.7E-09 3.7E-14 117.4 25.6 114 69-209 273-388 (962)
166 KOG2340 Uncharacterized conser 99.2 8.2E-10 1.8E-14 106.1 18.9 382 49-452 215-678 (698)
167 KOG1015 Transcription regulato 99.2 2.3E-09 5E-14 109.4 18.5 122 317-438 1125-1271(1567)
168 PF00176 SNF2_N: SNF2 family N 99.1 1.3E-10 2.8E-15 111.9 9.1 120 68-210 24-147 (299)
169 PF07517 SecA_DEAD: SecA DEAD- 99.1 3.1E-09 6.6E-14 97.4 14.7 132 45-210 73-210 (266)
170 KOG0921 Dosage compensation co 98.8 6.6E-08 1.4E-12 98.7 13.0 112 332-444 643-776 (1282)
171 PRK15483 type III restriction- 98.7 1.4E-07 2.9E-12 100.1 12.8 72 385-456 501-582 (986)
172 KOG0952 DNA/RNA helicase MER3/ 98.7 3.6E-09 7.8E-14 109.6 -0.1 126 69-221 943-1069(1230)
173 KOG1016 Predicted DNA helicase 98.6 2.9E-06 6.4E-11 85.6 19.2 117 333-449 720-854 (1387)
174 PF13086 AAA_11: AAA domain; P 98.6 7.9E-08 1.7E-12 88.9 7.6 69 50-123 1-75 (236)
175 PF13307 Helicase_C_2: Helicas 98.5 1.8E-07 3.9E-12 80.9 5.9 107 331-441 8-149 (167)
176 TIGR00596 rad1 DNA repair prot 98.4 3.5E-06 7.5E-11 89.6 14.3 52 170-222 5-56 (814)
177 KOG1802 RNA helicase nonsense 98.4 2.7E-06 5.8E-11 84.6 10.6 85 42-137 402-486 (935)
178 KOG1132 Helicase of the DEAD s 98.3 1.4E-06 3E-11 89.6 8.0 161 46-211 18-261 (945)
179 COG3587 Restriction endonuclea 98.3 2.8E-05 6E-10 80.0 15.5 73 384-456 482-567 (985)
180 PF02562 PhoH: PhoH-like prote 98.1 1.9E-06 4.2E-11 75.9 3.5 59 49-113 3-61 (205)
181 PF13245 AAA_19: Part of AAA d 98.1 1.7E-05 3.7E-10 58.1 7.4 53 69-121 10-62 (76)
182 KOG1001 Helicase-like transcri 98.1 1.5E-05 3.1E-10 83.0 9.0 101 334-437 541-643 (674)
183 PF13604 AAA_30: AAA domain; P 98.1 1.3E-05 2.8E-10 71.4 7.5 64 50-120 1-65 (196)
184 KOG1803 DNA helicase [Replicat 98.0 8.2E-06 1.8E-10 80.9 6.4 66 50-122 185-250 (649)
185 PF13872 AAA_34: P-loop contai 98.0 9E-06 1.9E-10 75.0 6.2 134 50-212 37-187 (303)
186 TIGR00376 DNA helicase, putati 98.0 2.7E-05 5.9E-10 81.7 10.6 69 49-124 156-224 (637)
187 PF09848 DUF2075: Uncharacteri 98.0 1.9E-05 4.1E-10 77.4 8.7 96 71-212 3-98 (352)
188 PF12340 DUF3638: Protein of u 97.9 7.4E-05 1.6E-09 66.5 9.2 72 47-124 21-92 (229)
189 PRK10536 hypothetical protein; 97.8 5.7E-05 1.2E-09 68.6 6.4 61 46-112 55-115 (262)
190 KOG1131 RNA polymerase II tran 97.7 0.00011 2.4E-09 71.5 7.5 79 46-124 12-90 (755)
191 PRK10875 recD exonuclease V su 97.7 0.00021 4.6E-09 74.3 10.2 69 52-125 154-223 (615)
192 smart00492 HELICc3 helicase su 97.6 0.00032 6.9E-09 58.4 7.7 72 369-440 31-136 (141)
193 smart00491 HELICc2 helicase su 97.6 0.00026 5.7E-09 59.0 7.0 69 373-441 32-138 (142)
194 PF00580 UvrD-helicase: UvrD/R 97.5 0.00021 4.6E-09 69.1 7.4 70 51-126 1-70 (315)
195 TIGR01447 recD exodeoxyribonuc 97.5 0.00058 1.3E-08 70.9 10.7 67 53-124 148-216 (586)
196 PRK06526 transposase; Provisio 97.5 0.00069 1.5E-08 62.7 9.9 73 22-116 68-140 (254)
197 TIGR01448 recD_rel helicase, p 97.5 0.00074 1.6E-08 72.2 10.9 69 44-119 318-386 (720)
198 TIGR02768 TraA_Ti Ti-type conj 97.4 0.0019 4.1E-08 69.4 13.3 65 46-118 349-413 (744)
199 COG3421 Uncharacterized protei 97.4 0.00086 1.9E-08 66.7 9.6 119 74-212 2-127 (812)
200 KOG1805 DNA replication helica 97.3 0.0017 3.6E-08 68.4 11.0 152 35-210 658-809 (1100)
201 PRK13889 conjugal transfer rel 97.3 0.0021 4.6E-08 70.2 12.0 65 45-117 342-406 (988)
202 PRK08181 transposase; Validate 97.3 0.0013 2.9E-08 61.1 9.1 75 22-118 75-150 (269)
203 PRK10919 ATP-dependent DNA hel 97.3 0.00071 1.5E-08 72.1 8.0 70 50-125 2-71 (672)
204 COG1484 DnaC DNA replication p 97.2 0.0016 3.6E-08 60.2 8.5 50 68-122 104-153 (254)
205 TIGR01075 uvrD DNA helicase II 97.2 0.0011 2.4E-08 71.5 8.4 71 49-125 3-73 (715)
206 PRK13826 Dtr system oriT relax 97.2 0.0048 1E-07 68.0 12.9 77 34-118 366-442 (1102)
207 PF13401 AAA_22: AAA domain; P 97.1 0.0068 1.5E-07 49.9 11.1 20 69-88 4-23 (131)
208 PRK11773 uvrD DNA-dependent he 97.1 0.0013 2.9E-08 70.8 8.1 70 50-125 9-78 (721)
209 PF13871 Helicase_C_4: Helicas 97.1 0.0017 3.7E-08 59.9 7.6 81 376-456 52-144 (278)
210 PRK04296 thymidine kinase; Pro 97.1 0.0019 4.2E-08 57.1 7.4 37 69-109 2-38 (190)
211 PRK11054 helD DNA helicase IV; 97.1 0.0033 7.2E-08 66.6 10.2 86 45-136 191-276 (684)
212 PRK12723 flagellar biosynthesi 97.0 0.0055 1.2E-07 60.1 11.0 61 69-132 174-236 (388)
213 PF01695 IstB_IS21: IstB-like 97.0 0.00096 2.1E-08 58.2 5.1 46 67-117 45-90 (178)
214 PF05970 PIF1: PIF1-like helic 96.9 0.0018 3.9E-08 63.7 6.7 63 51-117 2-66 (364)
215 KOG0989 Replication factor C, 96.9 0.0019 4.1E-08 59.4 5.9 23 69-91 57-79 (346)
216 PF14617 CMS1: U3-containing 9 96.8 0.0031 6.7E-08 57.5 6.8 86 100-207 125-211 (252)
217 PRK06921 hypothetical protein; 96.8 0.0089 1.9E-07 55.8 9.6 45 69-117 117-161 (266)
218 KOG0383 Predicted helicase [Ge 96.7 0.00015 3.3E-09 74.8 -2.6 77 318-398 615-696 (696)
219 TIGR01074 rep ATP-dependent DN 96.7 0.0061 1.3E-07 65.5 9.4 70 51-126 2-71 (664)
220 PF00308 Bac_DnaA: Bacterial d 96.5 0.028 6.2E-07 50.9 10.7 47 70-119 35-81 (219)
221 cd00009 AAA The AAA+ (ATPases 96.5 0.017 3.6E-07 48.4 8.8 18 69-86 19-36 (151)
222 KOG0298 DEAD box-containing he 96.4 0.0074 1.6E-07 65.5 7.3 99 67-188 372-484 (1394)
223 KOG1133 Helicase of the DEAD s 96.4 0.0031 6.7E-08 64.0 3.7 107 332-441 629-779 (821)
224 cd01124 KaiC KaiC is a circadi 96.4 0.051 1.1E-06 47.9 11.3 48 72-124 2-49 (187)
225 TIGR01073 pcrA ATP-dependent D 96.3 0.015 3.2E-07 63.0 9.2 72 49-126 3-74 (726)
226 PRK07952 DNA replication prote 96.3 0.015 3.3E-07 53.3 7.9 42 70-116 100-141 (244)
227 PRK05707 DNA polymerase III su 96.3 0.03 6.4E-07 54.0 9.9 39 50-88 3-41 (328)
228 COG1419 FlhF Flagellar GTP-bin 96.2 0.019 4.1E-07 55.6 8.0 78 68-148 202-279 (407)
229 PRK14722 flhF flagellar biosyn 96.2 0.031 6.8E-07 54.4 9.4 72 68-142 136-207 (374)
230 COG1875 NYN ribonuclease and A 96.1 0.01 2.2E-07 56.1 5.4 66 46-114 224-289 (436)
231 TIGR02760 TraI_TIGR conjugativ 96.1 0.57 1.2E-05 56.2 20.8 65 50-120 429-493 (1960)
232 PRK12377 putative replication 96.0 0.02 4.2E-07 52.7 7.0 47 69-120 101-147 (248)
233 smart00382 AAA ATPases associa 96.0 0.0089 1.9E-07 49.7 4.6 42 69-114 2-43 (148)
234 TIGR02785 addA_Gpos recombinat 96.0 0.038 8.2E-07 63.3 10.8 125 50-208 1-126 (1232)
235 cd01120 RecA-like_NTPases RecA 96.0 0.15 3.2E-06 43.5 12.3 37 72-112 2-38 (165)
236 PF03354 Terminase_1: Phage Te 96.0 0.022 4.7E-07 58.4 7.9 75 53-127 1-80 (477)
237 PRK14974 cell division protein 96.0 0.11 2.3E-06 50.2 12.0 35 70-108 141-175 (336)
238 PTZ00112 origin recognition co 95.9 0.034 7.4E-07 59.1 8.9 43 52-95 760-806 (1164)
239 PRK00149 dnaA chromosomal repl 95.9 0.054 1.2E-06 55.1 10.3 46 70-118 149-194 (450)
240 PRK14956 DNA polymerase III su 95.9 0.019 4E-07 57.6 6.5 20 70-89 41-60 (484)
241 PRK08769 DNA polymerase III su 95.9 0.057 1.2E-06 51.7 9.5 41 48-88 2-45 (319)
242 COG2256 MGS1 ATPase related to 95.8 0.053 1.1E-06 52.2 9.0 19 70-88 49-67 (436)
243 PF05127 Helicase_RecD: Helica 95.8 0.0037 8E-08 53.8 1.3 55 73-130 1-55 (177)
244 TIGR03499 FlhF flagellar biosy 95.8 0.027 5.8E-07 53.3 7.2 22 69-90 194-215 (282)
245 COG1444 Predicted P-loop ATPas 95.8 0.11 2.4E-06 54.7 12.0 79 51-131 212-291 (758)
246 COG1435 Tdk Thymidine kinase [ 95.7 0.044 9.6E-07 47.4 7.3 104 69-224 4-108 (201)
247 PRK08727 hypothetical protein; 95.7 0.057 1.2E-06 49.5 8.6 35 70-108 42-76 (233)
248 PRK10917 ATP-dependent DNA hel 95.7 0.05 1.1E-06 58.3 9.3 81 331-411 309-391 (681)
249 TIGR00362 DnaA chromosomal rep 95.6 0.078 1.7E-06 53.2 9.9 37 70-108 137-173 (405)
250 PRK06893 DNA replication initi 95.6 0.073 1.6E-06 48.7 8.9 36 70-109 40-75 (229)
251 PRK14087 dnaA chromosomal repl 95.5 0.095 2.1E-06 53.0 10.3 50 70-122 142-191 (450)
252 PRK05642 DNA replication initi 95.5 0.087 1.9E-06 48.3 9.1 36 70-109 46-81 (234)
253 PHA03333 putative ATPase subun 95.5 0.17 3.7E-06 52.5 11.8 71 52-126 171-241 (752)
254 COG4626 Phage terminase-like p 95.5 0.13 2.9E-06 51.7 10.8 77 50-127 61-144 (546)
255 PRK13894 conjugal transfer ATP 95.5 0.039 8.5E-07 52.9 6.9 67 40-113 124-190 (319)
256 PRK08116 hypothetical protein; 95.4 0.14 3E-06 48.0 10.2 45 70-119 115-159 (268)
257 TIGR00595 priA primosomal prot 95.4 0.088 1.9E-06 54.1 9.5 92 317-411 8-101 (505)
258 PRK08084 DNA replication initi 95.3 0.14 3E-06 47.1 9.7 37 69-109 45-81 (235)
259 PRK05580 primosome assembly pr 95.3 0.1 2.3E-06 55.8 10.0 92 317-411 173-266 (679)
260 KOG0991 Replication factor C, 95.2 0.064 1.4E-06 47.5 6.7 19 70-88 49-67 (333)
261 COG1474 CDC6 Cdc6-related prot 95.2 0.074 1.6E-06 52.1 8.0 45 52-97 22-69 (366)
262 TIGR03420 DnaA_homol_Hda DnaA 95.2 0.13 2.8E-06 46.9 9.3 21 68-88 37-57 (226)
263 PRK08939 primosomal protein Dn 95.2 0.076 1.6E-06 50.7 7.8 45 69-118 156-200 (306)
264 CHL00181 cbbX CbbX; Provisiona 95.2 0.15 3.3E-06 48.2 9.7 21 69-89 59-79 (287)
265 PRK13709 conjugal transfer nic 95.2 0.16 3.5E-06 59.1 11.5 66 50-118 967-1033(1747)
266 PRK14873 primosome assembly pr 95.1 0.14 3.1E-06 54.2 10.3 95 316-412 170-266 (665)
267 PF05621 TniB: Bacterial TniB 95.1 0.097 2.1E-06 48.9 8.0 16 70-85 62-77 (302)
268 PRK14712 conjugal transfer nic 95.1 0.13 2.8E-06 59.1 10.5 65 50-118 835-901 (1623)
269 TIGR02881 spore_V_K stage V sp 95.1 0.065 1.4E-06 50.1 7.1 20 69-88 42-61 (261)
270 PRK14086 dnaA chromosomal repl 95.1 0.24 5.1E-06 51.5 11.5 47 70-119 315-361 (617)
271 PRK09183 transposase/IS protei 95.1 0.12 2.6E-06 48.2 8.7 74 22-117 72-145 (259)
272 TIGR00643 recG ATP-dependent D 95.1 0.097 2.1E-06 55.7 9.1 81 331-411 283-365 (630)
273 PF05496 RuvB_N: Holliday junc 95.0 0.084 1.8E-06 47.1 7.0 19 70-88 51-69 (233)
274 COG1110 Reverse gyrase [DNA re 95.0 0.087 1.9E-06 56.5 8.2 73 322-395 115-191 (1187)
275 PRK14964 DNA polymerase III su 95.0 0.041 8.9E-07 55.7 5.7 21 70-90 36-56 (491)
276 PRK13833 conjugal transfer pro 94.9 0.084 1.8E-06 50.5 7.3 65 43-114 123-187 (323)
277 PRK06645 DNA polymerase III su 94.9 0.067 1.5E-06 54.6 6.8 21 70-90 44-64 (507)
278 KOG0701 dsRNA-specific nucleas 94.8 0.014 3E-07 66.0 2.0 96 333-430 293-399 (1606)
279 cd01122 GP4d_helicase GP4d_hel 94.8 0.14 3.1E-06 48.2 8.5 41 65-108 26-66 (271)
280 PF00448 SRP54: SRP54-type pro 94.7 0.14 3E-06 45.4 7.7 59 71-136 3-63 (196)
281 PRK00411 cdc6 cell division co 94.7 0.096 2.1E-06 52.4 7.6 37 69-107 55-91 (394)
282 PRK14088 dnaA chromosomal repl 94.7 0.21 4.6E-06 50.5 10.0 38 70-109 131-168 (440)
283 PF13177 DNA_pol3_delta2: DNA 94.7 0.15 3.4E-06 43.7 7.7 22 70-91 20-41 (162)
284 PLN03025 replication factor C 94.7 0.17 3.8E-06 48.9 9.0 19 70-88 35-53 (319)
285 PRK06871 DNA polymerase III su 94.7 0.17 3.6E-06 48.6 8.6 40 51-90 3-45 (325)
286 PRK07994 DNA polymerase III su 94.6 0.075 1.6E-06 55.7 6.6 18 72-89 41-58 (647)
287 PRK08533 flagellar accessory p 94.6 0.64 1.4E-05 42.5 12.0 52 68-124 23-74 (230)
288 TIGR02782 TrbB_P P-type conjug 94.6 0.13 2.8E-06 49.0 7.7 68 40-114 108-175 (299)
289 PRK07003 DNA polymerase III su 94.5 0.12 2.7E-06 54.4 7.8 19 70-88 39-57 (830)
290 COG4962 CpaF Flp pilus assembl 94.5 0.061 1.3E-06 50.9 5.0 63 46-116 153-215 (355)
291 PRK11823 DNA repair protein Ra 94.5 0.16 3.4E-06 51.4 8.4 61 59-124 69-130 (446)
292 PRK14962 DNA polymerase III su 94.5 0.15 3.2E-06 51.8 8.2 19 70-88 37-55 (472)
293 COG3973 Superfamily I DNA and 94.5 0.21 4.5E-06 50.7 8.8 91 34-126 189-285 (747)
294 PRK14723 flhF flagellar biosyn 94.4 0.21 4.4E-06 53.3 9.3 64 69-136 185-249 (767)
295 PRK07993 DNA polymerase III su 94.4 0.19 4E-06 48.7 8.3 39 50-88 2-43 (334)
296 PRK12422 chromosomal replicati 94.4 0.21 4.6E-06 50.4 9.0 42 70-116 142-183 (445)
297 PRK11331 5-methylcytosine-spec 94.4 0.14 2.9E-06 51.0 7.4 26 62-87 187-212 (459)
298 PRK14961 DNA polymerase III su 94.4 0.037 8.1E-07 54.5 3.6 18 71-88 40-57 (363)
299 PRK06835 DNA replication prote 94.4 0.11 2.3E-06 50.2 6.6 46 68-118 182-227 (329)
300 TIGR03015 pepcterm_ATPase puta 94.4 0.069 1.5E-06 50.2 5.3 38 50-87 23-61 (269)
301 PRK14955 DNA polymerase III su 94.4 0.11 2.4E-06 51.8 7.0 20 70-89 39-58 (397)
302 TIGR00580 mfd transcription-re 94.3 0.25 5.3E-06 54.5 9.9 81 331-411 499-581 (926)
303 PRK10867 signal recognition pa 94.3 0.47 1E-05 47.5 11.1 59 71-135 102-162 (433)
304 TIGR01547 phage_term_2 phage t 94.3 0.14 3E-06 51.3 7.5 58 72-130 4-62 (396)
305 PRK14960 DNA polymerase III su 94.2 0.1 2.3E-06 54.2 6.4 20 70-89 38-57 (702)
306 PRK05973 replicative DNA helic 94.2 0.16 3.4E-06 46.4 6.9 85 35-124 25-114 (237)
307 KOG1513 Nuclear helicase MOP-3 94.2 0.019 4.1E-07 59.3 1.0 81 376-456 848-940 (1300)
308 PRK09111 DNA polymerase III su 94.1 0.19 4.2E-06 52.5 8.4 21 70-90 47-67 (598)
309 TIGR03877 thermo_KaiC_1 KaiC d 94.1 0.1 2.2E-06 48.0 5.8 55 66-125 18-72 (237)
310 PRK14963 DNA polymerase III su 94.1 0.16 3.5E-06 52.1 7.6 19 70-88 37-55 (504)
311 PRK14958 DNA polymerase III su 94.1 0.06 1.3E-06 55.3 4.5 20 70-89 39-58 (509)
312 cd01121 Sms Sms (bacterial rad 94.1 0.24 5.2E-06 48.6 8.4 54 66-124 79-132 (372)
313 PRK05703 flhF flagellar biosyn 94.0 0.21 4.5E-06 50.1 8.0 63 69-137 221-286 (424)
314 PRK14957 DNA polymerase III su 94.0 0.14 3E-06 52.8 6.8 20 71-90 40-59 (546)
315 PHA02533 17 large terminase pr 93.9 0.22 4.7E-06 51.4 8.2 71 50-126 59-129 (534)
316 TIGR02928 orc1/cdc6 family rep 93.9 0.22 4.7E-06 49.3 8.1 26 69-95 40-65 (365)
317 PF06745 KaiC: KaiC; InterPro 93.9 0.11 2.3E-06 47.5 5.5 54 66-124 16-70 (226)
318 TIGR00767 rho transcription te 93.9 0.17 3.7E-06 49.5 6.9 29 66-95 165-193 (415)
319 PRK12726 flagellar biosynthesi 93.9 0.27 5.9E-06 47.8 8.2 60 68-134 205-266 (407)
320 TIGR01425 SRP54_euk signal rec 93.9 0.73 1.6E-05 45.9 11.4 61 71-138 102-164 (429)
321 TIGR00959 ffh signal recogniti 93.8 0.56 1.2E-05 46.9 10.6 60 71-136 101-162 (428)
322 PRK10689 transcription-repair 93.8 0.33 7.3E-06 54.9 9.9 81 331-411 648-730 (1147)
323 KOG1513 Nuclear helicase MOP-3 93.7 0.087 1.9E-06 54.7 4.7 115 17-135 231-351 (1300)
324 TIGR02760 TraI_TIGR conjugativ 93.7 0.25 5.4E-06 59.0 9.2 64 50-118 1019-1085(1960)
325 PRK14949 DNA polymerase III su 93.7 0.19 4.1E-06 54.2 7.4 18 71-88 40-57 (944)
326 COG1198 PriA Primosomal protei 93.7 0.18 3.9E-06 53.4 7.2 94 314-410 225-320 (730)
327 PRK14965 DNA polymerase III su 93.7 0.15 3.3E-06 53.3 6.7 19 70-88 39-57 (576)
328 PRK06995 flhF flagellar biosyn 93.7 0.38 8.3E-06 48.7 9.2 62 69-135 256-319 (484)
329 PRK13342 recombination factor 93.7 0.4 8.8E-06 48.2 9.5 19 70-88 37-55 (413)
330 PF06733 DEAD_2: DEAD_2; Inte 93.6 0.029 6.3E-07 48.9 1.1 44 167-211 114-159 (174)
331 PRK12727 flagellar biosynthesi 93.6 0.71 1.5E-05 47.0 10.8 64 67-135 348-413 (559)
332 PRK05896 DNA polymerase III su 93.5 0.083 1.8E-06 54.6 4.2 20 70-89 39-58 (605)
333 PRK14959 DNA polymerase III su 93.5 0.095 2.1E-06 54.5 4.6 21 70-90 39-59 (624)
334 PRK08691 DNA polymerase III su 93.5 0.16 3.4E-06 53.3 6.2 20 70-89 39-58 (709)
335 PRK07764 DNA polymerase III su 93.4 0.088 1.9E-06 57.1 4.5 22 70-91 38-59 (824)
336 PRK11889 flhF flagellar biosyn 93.4 0.37 8.1E-06 47.1 8.2 59 70-136 242-303 (436)
337 cd01130 VirB11-like_ATPase Typ 93.4 0.21 4.5E-06 44.0 6.2 33 50-85 9-41 (186)
338 PRK12323 DNA polymerase III su 93.4 0.14 3.1E-06 53.1 5.7 20 70-89 39-58 (700)
339 PRK14952 DNA polymerase III su 93.3 0.18 3.8E-06 52.5 6.3 20 71-90 37-56 (584)
340 PRK06067 flagellar accessory p 93.3 0.35 7.5E-06 44.4 7.7 54 66-124 22-75 (234)
341 COG0466 Lon ATP-dependent Lon 93.3 0.66 1.4E-05 48.3 10.1 50 175-228 398-448 (782)
342 PRK06964 DNA polymerase III su 93.3 0.51 1.1E-05 45.7 9.0 40 51-90 2-42 (342)
343 TIGR00064 ftsY signal recognit 93.3 0.66 1.4E-05 43.5 9.6 35 70-108 73-107 (272)
344 PRK13341 recombination factor 93.2 0.58 1.2E-05 50.2 10.2 19 70-88 53-71 (725)
345 PRK05563 DNA polymerase III su 93.2 0.29 6.4E-06 51.0 7.8 22 69-90 38-59 (559)
346 COG1219 ClpX ATP-dependent pro 93.2 0.053 1.2E-06 50.4 2.1 20 68-87 96-115 (408)
347 KOG1133 Helicase of the DEAD s 93.2 0.48 1E-05 48.8 8.9 47 47-94 13-59 (821)
348 PTZ00293 thymidine kinase; Pro 93.1 0.15 3.3E-06 45.3 4.8 39 69-111 4-42 (211)
349 cd03115 SRP The signal recogni 93.1 1.1 2.3E-05 38.9 10.2 17 72-88 3-19 (173)
350 KOG2028 ATPase related to the 93.1 0.39 8.5E-06 45.7 7.6 49 70-122 163-211 (554)
351 COG1200 RecG RecG-like helicas 93.1 0.55 1.2E-05 48.6 9.3 89 322-410 300-391 (677)
352 PF05876 Terminase_GpA: Phage 93.1 0.14 2.9E-06 53.4 5.1 73 49-126 15-88 (557)
353 PHA03368 DNA packaging termina 93.1 0.64 1.4E-05 48.3 9.6 56 69-126 254-309 (738)
354 TIGR02012 tigrfam_recA protein 93.0 0.25 5.5E-06 47.2 6.4 51 59-113 43-95 (321)
355 PHA02544 44 clamp loader, smal 93.0 0.9 2E-05 43.8 10.5 26 197-222 100-125 (316)
356 COG0593 DnaA ATPase involved i 93.0 0.61 1.3E-05 45.9 9.1 30 197-226 175-205 (408)
357 PRK00771 signal recognition pa 93.0 0.33 7.1E-06 48.7 7.4 57 70-133 96-154 (437)
358 COG2805 PilT Tfp pilus assembl 92.9 0.12 2.6E-06 47.9 3.9 26 71-97 127-152 (353)
359 PRK14721 flhF flagellar biosyn 92.9 0.41 9E-06 47.6 7.9 68 68-138 190-257 (420)
360 PRK09354 recA recombinase A; P 92.9 0.6 1.3E-05 45.1 8.8 45 66-114 57-101 (349)
361 PRK06090 DNA polymerase III su 92.9 0.25 5.5E-06 47.2 6.3 39 50-88 3-44 (319)
362 KOG0738 AAA+-type ATPase [Post 92.8 0.19 4.2E-06 48.1 5.2 40 70-117 246-285 (491)
363 PRK14951 DNA polymerase III su 92.8 0.22 4.7E-06 52.2 6.1 20 70-89 39-58 (618)
364 cd00983 recA RecA is a bacter 92.8 0.23 5E-06 47.5 5.8 53 58-114 42-96 (325)
365 KOG0344 ATP-dependent RNA heli 92.8 0.73 1.6E-05 46.5 9.4 102 77-207 365-466 (593)
366 cd01128 rho_factor Transcripti 92.7 0.26 5.6E-06 45.5 5.9 21 65-85 12-32 (249)
367 PRK07940 DNA polymerase III su 92.7 0.47 1E-05 47.0 8.1 21 69-89 36-56 (394)
368 COG0467 RAD55 RecA-superfamily 92.5 0.21 4.5E-06 46.7 5.2 55 67-126 21-75 (260)
369 TIGR02640 gas_vesic_GvpN gas v 92.5 0.099 2.1E-06 48.9 3.0 37 52-88 4-40 (262)
370 PRK14950 DNA polymerase III su 92.5 0.31 6.7E-06 51.3 6.9 20 70-89 39-58 (585)
371 PRK14954 DNA polymerase III su 92.5 0.28 6.2E-06 51.5 6.6 20 70-89 39-58 (620)
372 KOG1807 Helicases [Replication 92.5 0.3 6.6E-06 50.8 6.5 98 36-141 362-463 (1025)
373 cd01126 TraG_VirD4 The TraG/Tr 92.5 0.097 2.1E-06 52.1 3.1 56 71-136 1-56 (384)
374 TIGR03878 thermo_KaiC_2 KaiC d 92.5 0.41 8.8E-06 44.7 7.0 38 67-108 34-71 (259)
375 PRK08699 DNA polymerase III su 92.3 1.7 3.8E-05 41.9 11.3 41 51-91 2-43 (325)
376 PRK13851 type IV secretion sys 92.3 0.16 3.6E-06 49.1 4.3 42 68-114 161-202 (344)
377 PF02534 T4SS-DNA_transf: Type 92.2 0.15 3.4E-06 52.3 4.2 49 70-124 45-93 (469)
378 KOG0058 Peptide exporter, ABC 92.2 0.51 1.1E-05 49.2 7.7 144 67-225 492-650 (716)
379 COG2804 PulE Type II secretory 92.0 0.26 5.7E-06 49.2 5.3 42 52-96 243-284 (500)
380 PRK04328 hypothetical protein; 92.0 0.33 7.2E-06 45.0 5.8 54 67-125 21-74 (249)
381 PRK09376 rho transcription ter 91.9 0.6 1.3E-05 45.6 7.4 30 66-96 166-195 (416)
382 PRK09112 DNA polymerase III su 91.8 0.41 9E-06 46.7 6.4 34 55-88 28-64 (351)
383 COG0513 SrmB Superfamily II DN 91.8 0.62 1.4E-05 48.2 8.1 73 335-411 102-182 (513)
384 PRK13897 type IV secretion sys 91.8 0.19 4.2E-06 52.4 4.3 56 70-135 159-214 (606)
385 KOG0331 ATP-dependent RNA heli 91.7 1 2.2E-05 45.6 9.1 76 100-203 340-415 (519)
386 TIGR00678 holB DNA polymerase 91.6 2 4.4E-05 37.8 10.2 19 70-88 15-33 (188)
387 PRK14969 DNA polymerase III su 91.6 0.3 6.6E-06 50.5 5.5 20 70-89 39-58 (527)
388 TIGR02397 dnaX_nterm DNA polym 91.6 0.63 1.4E-05 45.8 7.6 19 70-88 37-55 (355)
389 PRK06731 flhF flagellar biosyn 91.5 2.4 5.3E-05 39.6 10.9 21 70-90 76-96 (270)
390 PRK10416 signal recognition pa 91.5 1.8 4E-05 41.5 10.3 36 69-108 114-149 (318)
391 COG2255 RuvB Holliday junction 91.4 0.69 1.5E-05 42.6 6.8 19 70-88 53-71 (332)
392 PF06309 Torsin: Torsin; Inte 91.4 0.74 1.6E-05 37.1 6.3 54 69-123 51-111 (127)
393 PRK00440 rfc replication facto 91.3 0.89 1.9E-05 43.9 8.2 19 70-88 39-57 (319)
394 PRK07133 DNA polymerase III su 91.3 0.32 6.9E-06 51.6 5.3 20 70-89 41-60 (725)
395 PRK14948 DNA polymerase III su 91.2 0.37 8.1E-06 50.8 5.7 20 70-89 39-58 (620)
396 CHL00095 clpC Clp protease ATP 91.2 0.24 5.3E-06 54.4 4.5 36 53-88 512-558 (821)
397 KOG2004 Mitochondrial ATP-depe 91.1 0.23 4.9E-06 51.5 3.9 50 174-227 485-535 (906)
398 PRK14971 DNA polymerase III su 91.1 0.46 1E-05 50.1 6.3 19 70-88 40-58 (614)
399 PRK13900 type IV secretion sys 91.1 0.22 4.8E-06 48.1 3.7 41 68-113 159-199 (332)
400 PRK06305 DNA polymerase III su 91.1 0.48 1E-05 48.0 6.3 20 70-89 40-59 (451)
401 PRK14701 reverse gyrase; Provi 91.1 0.82 1.8E-05 53.6 8.7 64 331-394 121-187 (1638)
402 PRK12724 flagellar biosynthesi 91.1 0.84 1.8E-05 45.2 7.6 57 70-132 224-282 (432)
403 cd01129 PulE-GspE PulE/GspE Th 91.0 0.61 1.3E-05 43.6 6.5 62 42-112 58-119 (264)
404 PRK07471 DNA polymerase III su 91.0 1.3 2.8E-05 43.5 9.0 37 55-91 24-63 (365)
405 TIGR00631 uvrb excinuclease AB 91.0 1.4 3E-05 46.9 9.8 91 91-209 432-522 (655)
406 cd00984 DnaB_C DnaB helicase C 90.9 0.44 9.4E-06 44.0 5.4 52 62-116 6-60 (242)
407 PF01443 Viral_helicase1: Vira 90.9 0.14 3E-06 47.0 2.1 14 72-85 1-14 (234)
408 PRK06647 DNA polymerase III su 90.9 0.28 6.1E-06 51.0 4.4 19 70-88 39-57 (563)
409 PRK08451 DNA polymerase III su 90.7 0.66 1.4E-05 47.7 6.8 19 70-88 37-55 (535)
410 COG1074 RecB ATP-dependent exo 90.7 0.48 1E-05 53.9 6.4 56 68-123 15-71 (1139)
411 PF03796 DnaB_C: DnaB-like hel 90.6 0.99 2.1E-05 42.1 7.6 47 60-109 10-56 (259)
412 COG0470 HolB ATPase involved i 90.6 1 2.2E-05 43.6 8.0 21 70-90 24-45 (325)
413 PRK14970 DNA polymerase III su 90.6 0.72 1.6E-05 45.6 6.9 19 70-88 40-58 (367)
414 PF03237 Terminase_6: Terminas 90.5 3.4 7.3E-05 40.7 11.9 42 73-116 1-42 (384)
415 PRK10436 hypothetical protein; 90.4 0.57 1.2E-05 47.4 6.0 47 42-94 196-242 (462)
416 PF01078 Mg_chelatase: Magnesi 90.4 0.13 2.8E-06 45.4 1.3 31 55-85 8-38 (206)
417 TIGR03819 heli_sec_ATPase heli 90.4 0.72 1.6E-05 44.8 6.5 64 40-113 154-217 (340)
418 PRK04195 replication factor C 90.4 0.81 1.8E-05 47.1 7.2 19 69-87 39-57 (482)
419 PHA02244 ATPase-like protein 90.3 0.24 5.1E-06 48.0 3.0 24 64-87 114-137 (383)
420 PRK04537 ATP-dependent RNA hel 90.3 2.3 4.9E-05 44.8 10.5 79 100-206 256-334 (572)
421 PRK14953 DNA polymerase III su 90.3 0.37 8E-06 49.3 4.6 19 71-89 40-58 (486)
422 PHA00012 I assembly protein 90.2 0.43 9.4E-06 45.0 4.6 26 72-97 4-29 (361)
423 PRK07399 DNA polymerase III su 90.2 0.85 1.8E-05 43.8 6.8 19 70-88 27-45 (314)
424 TIGR02784 addA_alphas double-s 90.2 1.1 2.3E-05 51.6 8.6 56 69-125 10-65 (1141)
425 PF12846 AAA_10: AAA-like doma 90.0 0.52 1.1E-05 45.0 5.3 42 70-115 2-43 (304)
426 TIGR02525 plasmid_TraJ plasmid 90.0 0.76 1.7E-05 45.1 6.3 42 69-112 149-190 (372)
427 TIGR03881 KaiC_arch_4 KaiC dom 90.0 0.84 1.8E-05 41.7 6.4 55 65-124 16-70 (229)
428 KOG0744 AAA+-type ATPase [Post 89.9 1.4 3E-05 41.5 7.5 68 69-137 177-257 (423)
429 TIGR02639 ClpA ATP-dependent C 89.9 1.9 4.2E-05 46.9 9.9 38 51-88 183-222 (731)
430 COG0210 UvrD Superfamily I DNA 89.7 0.84 1.8E-05 49.1 7.0 71 50-126 2-72 (655)
431 COG1197 Mfd Transcription-repa 89.6 2 4.4E-05 47.5 9.6 86 99-210 801-886 (1139)
432 PRK12608 transcription termina 89.5 1.5 3.3E-05 42.7 7.8 42 53-96 118-159 (380)
433 TIGR02524 dot_icm_DotB Dot/Icm 89.4 0.55 1.2E-05 45.9 4.9 27 68-95 133-159 (358)
434 COG0552 FtsY Signal recognitio 89.3 1.6 3.5E-05 41.4 7.6 63 71-140 141-206 (340)
435 PRK13850 type IV secretion sys 89.2 0.44 9.5E-06 50.5 4.3 48 70-123 140-187 (670)
436 PF10593 Z1: Z1 domain; Inter 89.2 1.6 3.4E-05 40.0 7.4 83 360-448 111-199 (239)
437 PF00437 T2SE: Type II/IV secr 89.2 0.28 6E-06 46.2 2.6 42 68-113 126-167 (270)
438 TIGR02533 type_II_gspE general 89.1 0.89 1.9E-05 46.5 6.3 47 42-94 220-266 (486)
439 TIGR02655 circ_KaiC circadian 89.1 0.96 2.1E-05 46.5 6.6 63 59-125 10-73 (484)
440 TIGR01054 rgy reverse gyrase. 89.0 1.3 2.8E-05 50.4 8.1 80 332-411 121-207 (1171)
441 TIGR03880 KaiC_arch_3 KaiC dom 88.7 0.84 1.8E-05 41.5 5.4 54 66-124 13-66 (224)
442 PRK13531 regulatory ATPase Rav 88.6 0.31 6.7E-06 49.0 2.6 35 53-87 23-57 (498)
443 PF01580 FtsK_SpoIIIE: FtsK/Sp 88.4 0.72 1.6E-05 41.3 4.7 41 69-109 38-78 (205)
444 PHA00350 putative assembly pro 88.3 1.1 2.4E-05 44.2 6.1 26 72-97 4-30 (399)
445 TIGR00763 lon ATP-dependent pr 88.2 0.91 2E-05 49.7 6.1 20 68-87 346-365 (775)
446 cd00268 DEADc DEAD-box helicas 88.2 3.9 8.4E-05 36.4 9.3 77 331-411 68-151 (203)
447 cd01131 PilT Pilus retraction 88.2 0.73 1.6E-05 41.0 4.5 38 72-112 4-41 (198)
448 cd00544 CobU Adenosylcobinamid 88.1 4.5 9.7E-05 34.9 9.1 45 72-123 2-46 (169)
449 TIGR02788 VirB11 P-type DNA tr 88.0 0.58 1.3E-05 44.9 3.9 18 68-85 143-160 (308)
450 TIGR02538 type_IV_pilB type IV 87.8 1.1 2.3E-05 47.1 6.0 47 42-94 294-340 (564)
451 TIGR02237 recomb_radB DNA repa 87.8 0.82 1.8E-05 41.1 4.6 39 68-110 11-49 (209)
452 KOG2228 Origin recognition com 87.8 3.7 8E-05 39.0 8.7 44 183-227 124-167 (408)
453 TIGR02880 cbbX_cfxQ probable R 87.7 1 2.3E-05 42.6 5.4 20 69-88 58-77 (284)
454 PF01637 Arch_ATPase: Archaeal 87.7 3.1 6.8E-05 37.7 8.6 17 69-85 20-36 (234)
455 PRK11034 clpA ATP-dependent Cl 87.6 3.3 7.2E-05 44.9 9.6 20 69-88 207-226 (758)
456 TIGR02655 circ_KaiC circadian 87.6 1 2.2E-05 46.3 5.7 63 57-124 250-313 (484)
457 TIGR00416 sms DNA repair prote 87.5 2 4.4E-05 43.6 7.7 54 66-124 91-144 (454)
458 TIGR03743 SXT_TraD conjugative 87.5 1.5 3.3E-05 46.4 7.0 54 68-125 175-230 (634)
459 KOG0333 U5 snRNP-like RNA heli 87.5 2.7 5.8E-05 42.2 8.0 73 101-202 517-590 (673)
460 cd01394 radB RadB. The archaea 87.4 1.2 2.7E-05 40.2 5.6 46 59-108 8-54 (218)
461 PF02456 Adeno_IVa2: Adenoviru 87.4 0.57 1.2E-05 43.6 3.3 38 72-114 90-130 (369)
462 COG0606 Predicted ATPase with 87.4 0.35 7.7E-06 47.9 2.1 31 55-85 184-214 (490)
463 KOG0745 Putative ATP-dependent 87.2 0.37 8.1E-06 46.9 2.1 18 69-86 226-243 (564)
464 cd00079 HELICc Helicase superf 87.2 9.8 0.00021 30.6 10.5 80 100-207 27-106 (131)
465 PF13191 AAA_16: AAA ATPase do 87.1 1.7 3.6E-05 38.0 6.1 29 68-97 23-51 (185)
466 PRK04837 ATP-dependent RNA hel 86.9 4.1 8.9E-05 41.2 9.6 77 101-205 255-331 (423)
467 TIGR02688 conserved hypothetic 86.9 1.4 3.1E-05 43.5 5.8 53 35-88 172-228 (449)
468 PF13481 AAA_25: AAA domain; P 86.9 1.7 3.7E-05 38.3 6.1 58 68-126 31-94 (193)
469 PRK10590 ATP-dependent RNA hel 86.7 4.8 0.0001 41.1 10.0 75 101-203 245-319 (456)
470 PRK08058 DNA polymerase III su 86.7 3.3 7.1E-05 40.2 8.4 19 70-88 29-47 (329)
471 KOG1806 DEAD box containing he 86.6 1.1 2.3E-05 48.4 5.1 72 47-124 735-806 (1320)
472 PF13555 AAA_29: P-loop contai 86.6 0.91 2E-05 31.5 3.2 17 69-85 23-39 (62)
473 COG0630 VirB11 Type IV secreto 86.6 1.3 2.8E-05 42.5 5.5 57 49-113 126-182 (312)
474 PRK10865 protein disaggregatio 86.6 1 2.3E-05 49.6 5.4 18 71-88 600-617 (857)
475 PF12775 AAA_7: P-loop contain 86.6 0.84 1.8E-05 42.9 4.1 18 68-85 32-49 (272)
476 TIGR03345 VI_ClpV1 type VI sec 86.6 2.3 5.1E-05 46.8 8.0 35 53-87 569-614 (852)
477 PRK13822 conjugal transfer cou 86.4 0.82 1.8E-05 48.4 4.3 59 69-137 224-282 (641)
478 PF01935 DUF87: Domain of unkn 86.4 1.1 2.4E-05 40.8 4.8 44 69-115 23-66 (229)
479 TIGR01420 pilT_fam pilus retra 86.4 1.1 2.4E-05 43.8 4.9 43 68-113 121-163 (343)
480 PRK11192 ATP-dependent RNA hel 86.4 4.7 0.0001 40.9 9.7 75 101-203 245-319 (434)
481 COG4098 comFA Superfamily II D 86.3 5.3 0.00011 38.0 8.8 92 92-212 296-388 (441)
482 PRK09361 radB DNA repair and r 86.3 1.6 3.5E-05 39.7 5.8 47 59-109 12-59 (225)
483 PTZ00110 helicase; Provisional 86.2 4.8 0.0001 42.1 9.8 77 100-204 376-452 (545)
484 PRK11634 ATP-dependent RNA hel 86.0 2.8 6.1E-05 44.6 8.0 76 332-411 74-157 (629)
485 TIGR03754 conj_TOL_TraD conjug 85.9 2.4 5.3E-05 44.5 7.3 54 69-126 180-235 (643)
486 PF10412 TrwB_AAD_bind: Type I 85.9 1.1 2.3E-05 44.6 4.6 46 68-117 14-59 (386)
487 PF04665 Pox_A32: Poxvirus A32 85.8 1.1 2.4E-05 40.9 4.2 36 70-109 14-49 (241)
488 COG1111 MPH1 ERCC4-like helica 85.7 22 0.00049 35.8 13.3 100 326-431 53-161 (542)
489 KOG2036 Predicted P-loop ATPas 85.7 3.2 7E-05 43.1 7.7 69 52-123 255-326 (1011)
490 TIGR03346 chaperone_ClpB ATP-d 85.6 1.2 2.6E-05 49.3 5.2 36 53-88 568-614 (852)
491 cd01127 TrwB Bacterial conjuga 85.5 1 2.3E-05 45.1 4.4 45 68-116 41-85 (410)
492 PHA03372 DNA packaging termina 85.3 7.2 0.00016 40.4 10.0 52 70-123 203-254 (668)
493 COG2909 MalT ATP-dependent tra 85.2 2 4.3E-05 45.8 6.3 30 198-227 130-159 (894)
494 PRK09302 circadian clock prote 85.2 2.3 4.9E-05 44.2 6.8 64 57-125 18-83 (509)
495 KOG0739 AAA+-type ATPase [Post 85.2 2.3 5.1E-05 39.5 5.9 46 70-123 167-212 (439)
496 PF07728 AAA_5: AAA domain (dy 85.1 0.65 1.4E-05 38.5 2.3 17 71-87 1-17 (139)
497 TIGR03346 chaperone_ClpB ATP-d 85.0 4.5 9.7E-05 44.9 9.3 34 55-88 178-213 (852)
498 PF00004 AAA: ATPase family as 85.0 0.82 1.8E-05 37.3 2.9 16 72-87 1-16 (132)
499 COG2842 Uncharacterized ATPase 84.9 2.1 4.5E-05 39.9 5.5 38 67-112 92-129 (297)
500 PRK13876 conjugal transfer cou 84.8 0.79 1.7E-05 48.6 3.3 48 70-123 145-192 (663)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-72 Score=506.23 Aligned_cols=388 Identities=35% Similarity=0.516 Sum_probs=348.4
Q ss_pred CCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHH
Q 010111 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (518)
Q Consensus 34 ~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~L 113 (518)
|++|.++++++.+||..||++|.+++|.++ .|+|+++.|.||||||.+|++|++++|...+ ..++++|++|||||
T Consensus 67 gv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L----~g~dvIglAeTGSGKT~afaLPIl~~LL~~p-~~~~~lVLtPtREL 141 (476)
T KOG0330|consen 67 GVHPELLEACQELGWKKPTKIQSEAIPVAL----GGRDVIGLAETGSGKTGAFALPILQRLLQEP-KLFFALVLTPTREL 141 (476)
T ss_pred CcCHHHHHHHHHhCcCCCchhhhhhcchhh----CCCcEEEEeccCCCchhhhHHHHHHHHHcCC-CCceEEEecCcHHH
Confidence 599999999999999999999999977666 5999999999999999999999999998864 45899999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCC
Q 010111 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (518)
Q Consensus 114 a~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~ 193 (518)
|.|+.+.|..++...|+.+.+++||.+...+... +.+.|+|+|+|||+|++++.+.+.+
T Consensus 142 A~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~---------------------L~kkPhilVaTPGrL~dhl~~Tkgf 200 (476)
T KOG0330|consen 142 AQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQ---------------------LSKKPHILVATPGRLWDHLENTKGF 200 (476)
T ss_pred HHHHHHHHHHhccccCeEEEEEecCchHHHHHHH---------------------hhcCCCEEEeCcHHHHHHHHhccCc
Confidence 9999999999999999999999999998877654 4456799999999999999988899
Q ss_pred CCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEe
Q 010111 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (518)
Q Consensus 194 ~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (518)
++..++++|+||||+++++.|.+.+..|+..++.. .|++++|
T Consensus 201 ~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~e--------------------------------------rqt~Lfs 242 (476)
T KOG0330|consen 201 SLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRE--------------------------------------RQTFLFS 242 (476)
T ss_pred cHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCcc--------------------------------------ceEEEEE
Confidence 99999999999999999999999999999988732 3889999
Q ss_pred EeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHh
Q 010111 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353 (518)
Q Consensus 274 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~ 353 (518)
||++..+..+....+.+|..+..... +..-..+.+.+...+...|..+|..+++...+..+||||++...++.++-.|+
T Consensus 243 ATMt~kv~kL~rasl~~p~~v~~s~k-y~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~ 321 (476)
T KOG0330|consen 243 ATMTKKVRKLQRASLDNPVKVAVSSK-YQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLR 321 (476)
T ss_pred eecchhhHHHHhhccCCCeEEeccch-hcchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHH
Confidence 99999999999999999998877654 45556778888899999999999999999999999999999999999999999
Q ss_pred hcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCC
Q 010111 354 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433 (518)
Q Consensus 354 ~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g 433 (518)
..+ +.+..+||.|++..|.-.++.|++|.++||||||+++||+|+|.+++|||||.|.+..+|+||+||++|+|+.|
T Consensus 322 ~lg---~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG 398 (476)
T KOG0330|consen 322 NLG---FQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSG 398 (476)
T ss_pred hcC---cceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCc
Confidence 877 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeecchhHHHHHHHHHHHhhcCCCCCccCCCchhhhhhHHHHHHHHHHHHHHHHhH
Q 010111 434 RCFTLLHKDEVCLVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESE 493 (518)
Q Consensus 434 ~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (518)
.+++|++..|.+.+.+|+..+.+. .+..+++....-.+.++.....+.....+...
T Consensus 399 ~~ItlVtqyDve~~qrIE~~~gkk----l~~~~~~~~~~~~l~erv~eA~~~a~m~~ke~ 454 (476)
T KOG0330|consen 399 KAITLVTQYDVELVQRIEHALGKK----LPEYKVDKNEVMSLNERVAEAQKEAGMEMKEL 454 (476)
T ss_pred ceEEEEehhhhHHHHHHHHHHhcC----CCccCcchHHHHHHHHHHHHHHHHhccchhhh
Confidence 999999999998888888887763 33455666666666666666555555444443
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-69 Score=524.48 Aligned_cols=360 Identities=32% Similarity=0.504 Sum_probs=331.5
Q ss_pred CCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhc-----ccCCccEEEEc
Q 010111 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVL 108 (518)
Q Consensus 34 ~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~-----~~~~~~~lil~ 108 (518)
+|+++...+++..||..|||+|.++|+.++ .|+|++..|.||||||++|++|++.++.+. ..+++++|||+
T Consensus 97 ~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l----~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~ 172 (519)
T KOG0331|consen 97 GLSEELMKALKEQGFEKPTPIQAQGWPIAL----SGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLA 172 (519)
T ss_pred cccHHHHHHHHhcCCCCCchhhhcccceec----cCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEc
Confidence 599999999999999999999999987666 599999999999999999999999999862 24578999999
Q ss_pred CcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHh
Q 010111 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188 (518)
Q Consensus 109 Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~ 188 (518)
||||||.|+.+.+..++....++..+++||.+...+.. .+.++++|+|+||++|.+++.
T Consensus 173 PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~---------------------~l~~gvdiviaTPGRl~d~le 231 (519)
T KOG0331|consen 173 PTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLR---------------------DLERGVDVVIATPGRLIDLLE 231 (519)
T ss_pred CcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHH---------------------HHhcCCcEEEeCChHHHHHHH
Confidence 99999999999999999999999999999999888865 456789999999999999999
Q ss_pred cCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCcee
Q 010111 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (518)
Q Consensus 189 ~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (518)
. +..+++++.++|+||||+|++++|.+.++.|+..++.+ ..|
T Consensus 232 ~-g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~-------------------------------------~rQ 273 (519)
T KOG0331|consen 232 E-GSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRP-------------------------------------DRQ 273 (519)
T ss_pred c-CCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCC-------------------------------------ccc
Confidence 8 67899999999999999999999999999999987432 227
Q ss_pred eEEEeEeecCChhhhhhccCCCCeEEeeCCc-cccCccccceeeeecCCCCcHHHHHHHHHhc---CCCcEEEEcCChhh
Q 010111 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQSL---GEEKCIVFTSSVES 344 (518)
Q Consensus 269 ~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~~~lVf~~s~~~ 344 (518)
++++|||++..+..++..++.+|..+.+... .......+.+....++...|...|..+|+.. .++++||||+++..
T Consensus 274 tlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~ 353 (519)
T KOG0331|consen 274 TLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRT 353 (519)
T ss_pred EEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhh
Confidence 8999999999999999999999999888755 5566778888888999888988888888765 46799999999999
Q ss_pred HHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhh
Q 010111 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAG 424 (518)
Q Consensus 345 ~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~G 424 (518)
|+.+...|+..+ +++..+||+.++.+|+.+++.|++|+..||||||+++||+|||+|++|||||+|.+.++|+||+|
T Consensus 354 ~~~l~~~l~~~~---~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiG 430 (519)
T KOG0331|consen 354 CDELARNLRRKG---WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIG 430 (519)
T ss_pred HHHHHHHHHhcC---cceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcC
Confidence 999999999766 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCcEEEEeecchhHHHHHHHHHHHhhcC
Q 010111 425 RTARAGQLGRCFTLLHKDEVCLVKRFKKLLQKADN 459 (518)
Q Consensus 425 R~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~~~~ 459 (518)
||||+|+.|.+++|++..+......+.+.+++.++
T Consensus 431 RTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q 465 (519)
T KOG0331|consen 431 RTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQ 465 (519)
T ss_pred ccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999988765
No 3
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-68 Score=498.48 Aligned_cols=398 Identities=34% Similarity=0.556 Sum_probs=340.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhccc--C
Q 010111 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--R 100 (518)
Q Consensus 23 ~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~--~ 100 (518)
+|.+++ |+-.+++++..+||..|||+|..+||..+ .|+|++.+|.||||||.+|++|++++|...+. .
T Consensus 182 sF~~mN------LSRPlLka~~~lGy~~PTpIQ~a~IPval----lgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~ 251 (691)
T KOG0338|consen 182 SFQSMN------LSRPLLKACSTLGYKKPTPIQVATIPVAL----LGKDICACAATGSGKTAAFALPILERLLYRPKKVA 251 (691)
T ss_pred hHHhcc------cchHHHHHHHhcCCCCCCchhhhcccHHh----hcchhhheecccCCchhhhHHHHHHHHhcCcccCc
Confidence 455555 88999999999999999999999977655 59999999999999999999999999887653 3
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
..+||||+|||+|+.|++...++++.+.++.+++++||.+...+.. .+..+|||+|+||
T Consensus 252 ~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~---------------------~LRs~PDIVIATP 310 (691)
T KOG0338|consen 252 ATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEA---------------------VLRSRPDIVIATP 310 (691)
T ss_pred ceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHH---------------------HHhhCCCEEEecc
Confidence 5689999999999999999999999999999999999999887754 4567889999999
Q ss_pred hHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCC
Q 010111 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (518)
|+|.+++.+...|+++++.++|+||||+|++.+|.+.+..|+.+++...
T Consensus 311 GRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~R------------------------------- 359 (691)
T KOG0338|consen 311 GRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNR------------------------------- 359 (691)
T ss_pred hhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccccc-------------------------------
Confidence 9999999998899999999999999999999999999999999987543
Q ss_pred CCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeec--CCCCcHHHHHHHHHhcCCCcEEEE
Q 010111 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC--ESKLKPLYLVALLQSLGEEKCIVF 338 (518)
Q Consensus 261 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~k~~~l~~~l~~~~~~~~lVf 338 (518)
|+++||||++..++.++...+.+|+.+.+.......+...+.|.-+. .+..+...+..++......++|||
T Consensus 360 -------QTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivF 432 (691)
T KOG0338|consen 360 -------QTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVF 432 (691)
T ss_pred -------cceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEE
Confidence 89999999999999999999999999888765544433333333222 244677788888888888999999
Q ss_pred cCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccc
Q 010111 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418 (518)
Q Consensus 339 ~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~ 418 (518)
+.+++.|.++.-.|.-.| +++..+||++++.+|.+.++.|++++++||||||+++||+||++|.+||||+.|.+...
T Consensus 433 v~tKk~AHRl~IllGLlg---l~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~ 509 (691)
T KOG0338|consen 433 VRTKKQAHRLRILLGLLG---LKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEH 509 (691)
T ss_pred EehHHHHHHHHHHHHHhh---chhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHH
Confidence 999999999998887555 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHHhhcCCCCCccCCCchhhhhhHHHHHHHHHHHHHHHHhH
Q 010111 419 YIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESE 493 (518)
Q Consensus 419 ~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (518)
|+||+|||+|+|+.|.+++|+.++|...++.+.+.-.. -+..+....+|...++.++..+.++-..++..++.+
T Consensus 510 Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~~~-a~~klk~R~i~~~~Iek~~~~ieemE~~iq~vl~eE 583 (691)
T KOG0338|consen 510 YLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSSTK-AGSKLKNRNIPPEVIEKFRKKIEEMEDTIQAVLDEE 583 (691)
T ss_pred HHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhhhh-cccchhhcCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999666665544221 223445567787777666665555544444444333
No 4
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-67 Score=486.57 Aligned_cols=463 Identities=44% Similarity=0.672 Sum_probs=386.1
Q ss_pred cC-CCCCCcccCCCCCCCCCCCCCCC----------HHHHHHHHhCCCCccchhhHHHHHHhhCCCC-----CCCCEEEE
Q 010111 12 LP-WMRSPVDVSLFEDCPLDHLPCLD----------PRLKVALQNMGISSLFPVQVAVWQETIGPGL-----FERDLCIN 75 (518)
Q Consensus 12 ~~-~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~-----~~~~~li~ 75 (518)
+| |...|.-+..-+...++.+ +++ ..+..++.+|++..++|+|...++.+++.+. .++|++|.
T Consensus 111 lp~wva~p~t~~~nslq~~s~l-~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ 189 (620)
T KOG0350|consen 111 LPGWVAIPETAQNNSLQIFSVL-GKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVN 189 (620)
T ss_pred CcccccCceecCCCceeeeecc-chhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEe
Confidence 55 8888887766444444433 233 3455569999999999999999998865433 46999999
Q ss_pred CCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccc
Q 010111 76 SPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 155 (518)
Q Consensus 76 apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~ 155 (518)
||||||||++|.+|+++.+..+..+..+++|++||++|+.|+++.|.+++...|+.|+...|..+..+...++...+.
T Consensus 190 ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~-- 267 (620)
T KOG0350|consen 190 APTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPP-- 267 (620)
T ss_pred cCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCC--
Confidence 999999999999999999999878889999999999999999999999999999999999999999988887765332
Q ss_pred cCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccc-----cc
Q 010111 156 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD-----NE 230 (518)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~-----~~ 230 (518)
....||+|+|||+|.+++.+.+.+++++++++||||||+|++..|.+|+..++..+... ..
T Consensus 268 --------------~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~ 333 (620)
T KOG0350|consen 268 --------------ECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLD 333 (620)
T ss_pred --------------ccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChh
Confidence 12459999999999999998889999999999999999999999999999999988765 22
Q ss_pred cccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeC---CccccCcccc
Q 010111 231 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG---ETRYKLPERL 307 (518)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 307 (518)
+.+.....+.+..+..+... ....+++...+++|||++.+...+....++.|....+. ...+.+|..+
T Consensus 334 nii~~~~~~~pt~~~e~~t~---------~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l 404 (620)
T KOG0350|consen 334 NIIRQRQAPQPTVLSELLTK---------LGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSL 404 (620)
T ss_pred hhhhhcccCCchhhHHHHhh---------cCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhh
Confidence 22222222223222222111 13456677889999999999999999999999766665 3678899999
Q ss_pred ceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHh-hcCCCceeEEEccccCChHHHHHHHHHHhcCCc
Q 010111 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386 (518)
Q Consensus 308 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~-~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~ 386 (518)
.++.+.++...+...++.++......++|+|++|.+.+.+++..|+ .++....++..+.|+++.+.|...+++|..|++
T Consensus 405 ~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i 484 (620)
T KOG0350|consen 405 SHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDI 484 (620)
T ss_pred hhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999999999999998 677777899999999999999999999999999
Q ss_pred eEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHHhhcC-CCCCcc
Q 010111 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQKADN-DSCPIH 465 (518)
Q Consensus 387 ~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~~~~-~~~~~~ 465 (518)
++|||+|+++||||+.+++.|||||+|.+...|+||+|||+|+|+.|.|++++...+. +.+.+++++.+. +..+..
T Consensus 485 ~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~---r~F~klL~~~~~~d~~~i~ 561 (620)
T KOG0350|consen 485 NVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEK---RLFSKLLKKTNLWDGVEIQ 561 (620)
T ss_pred eEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccc---hHHHHHHHHhcccCCccee
Confidence 9999999999999999999999999999999999999999999999999999999999 777777777554 455556
Q ss_pred CCCchhhhhhHHHHHHHHHHHHHHHHhHhc-cccccccc
Q 010111 466 SIPSSLIESLRPVYKSALDKLKETVESEAH-RKHTIGFK 503 (518)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 503 (518)
.++-..+......|.++++.++..+-+.+. +|.+..|.
T Consensus 562 ~~e~~~~~~~~~~Yt~ALEsLk~e~~~s~~~~k~q~a~r 600 (620)
T KOG0350|consen 562 PIEYIFIKDEDDRYTKALESLKAEVVNSAKPKKRQIAFR 600 (620)
T ss_pred ecCchHHHHHHHHHHHHHHHHHHHHhcccccccchhhhH
Confidence 666666666666999999999955554444 44445553
No 5
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-65 Score=471.64 Aligned_cols=351 Identities=33% Similarity=0.522 Sum_probs=316.4
Q ss_pred CCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccC----CccEEEEcC
Q 010111 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR----CLRALVVLP 109 (518)
Q Consensus 34 ~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~----~~~~lil~P 109 (518)
.|++++++++..+||..+||+|..++|.++. ++|+++.|+||||||++|++|+++.+.++..+ ...+||++|
T Consensus 12 ~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~----~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsP 87 (567)
T KOG0345|consen 12 PLSPWLLEALDESGFEKMTPVQAATIPLLLK----NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISP 87 (567)
T ss_pred CccHHHHHHHHhcCCcccCHHHHhhhHHHhc----CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecC
Confidence 3889999999999999999999999887764 89999999999999999999999999654321 246999999
Q ss_pred cHHHHHHHHHHHHHhccc-cCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHh
Q 010111 110 TRDLALQVKDVFAAIAPA-VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188 (518)
Q Consensus 110 t~~La~Q~~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~ 188 (518)
||||+.|+.+.+..|... .++++.+++||.+..+....+. .++++|+|||||+|.+++.
T Consensus 88 TRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fk--------------------ee~~nIlVgTPGRL~di~~ 147 (567)
T KOG0345|consen 88 TRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFK--------------------EEGPNILVGTPGRLLDILQ 147 (567)
T ss_pred cHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHH--------------------HhCCcEEEeCchhHHHHHh
Confidence 999999999999998877 5799999999999888877653 3678999999999999998
Q ss_pred c-CCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCce
Q 010111 189 A-TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (518)
Q Consensus 189 ~-~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (518)
+ ...+++.++.++|+||||++++++|...+..|++.++...
T Consensus 148 ~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQR-------------------------------------- 189 (567)
T KOG0345|consen 148 REAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQR-------------------------------------- 189 (567)
T ss_pred chhhhccccccceEEecchHhHhcccHHHHHHHHHHhccccc--------------------------------------
Confidence 8 3335677999999999999999999999999999987543
Q ss_pred eeEEEeEeecCChhhhhhccCCCCeEEeeCCcc-ccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHH
Q 010111 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR-YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTH 346 (518)
Q Consensus 268 ~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~ 346 (518)
++-+||||.+..+..+...++.+|+.+.+.... ...|..+..++..|.+..|...+..++......++|||++|...++
T Consensus 190 RTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVe 269 (567)
T KOG0345|consen 190 RTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVE 269 (567)
T ss_pred ccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHH
Confidence 567899999999999999999999998887654 3478889999999999999999999999998999999999999999
Q ss_pred HHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhc
Q 010111 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426 (518)
Q Consensus 347 ~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~ 426 (518)
+.+..|... .....+..+||.|.+..|..+++.|++....+|+|||+++||+|||++++||+||+|.++..|+||+|||
T Consensus 270 Yf~~~~~~~-l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRT 348 (567)
T KOG0345|consen 270 YFGKLFSRL-LKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRT 348 (567)
T ss_pred HHHHHHHHH-hCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchh
Confidence 999999876 2347899999999999999999999998889999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEEeecchhHHH
Q 010111 427 ARAGQLGRCFTLLHKDEVCLV 447 (518)
Q Consensus 427 gR~g~~g~~~~~~~~~e~~~~ 447 (518)
||+|+.|.+++|+.+.|..+.
T Consensus 349 aR~gr~G~Aivfl~p~E~aYv 369 (567)
T KOG0345|consen 349 ARAGREGNAIVFLNPREEAYV 369 (567)
T ss_pred hhccCccceEEEecccHHHHH
Confidence 999999999999999776443
No 6
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-65 Score=515.35 Aligned_cols=363 Identities=32% Similarity=0.518 Sum_probs=325.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCC
Q 010111 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (518)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~ 101 (518)
..|+++. +++.+++++.++||..|||+|.+++|.++. |+|+++.|+||||||++|++|+++.+.......
T Consensus 29 ~~F~~l~------l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~ 98 (513)
T COG0513 29 PEFASLG------LSPELLQALKDLGFEEPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERK 98 (513)
T ss_pred CCHhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhcccccC
Confidence 3466664 999999999999999999999999988875 899999999999999999999999977421122
Q ss_pred cc-EEEEcCcHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeC
Q 010111 102 LR-ALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (518)
Q Consensus 102 ~~-~lil~Pt~~La~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~T 179 (518)
.. +||++||||||.|+++.+..++... ++++.+++||.+...+... +..+++|+|+|
T Consensus 99 ~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~---------------------l~~~~~ivVaT 157 (513)
T COG0513 99 YVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEA---------------------LKRGVDIVVAT 157 (513)
T ss_pred CCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHH---------------------HhcCCCEEEEC
Confidence 12 9999999999999999999999988 7999999999998887643 34468999999
Q ss_pred ChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCC
Q 010111 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (518)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (518)
|+++++++.+ +.++++.+.++|+||||+|++++|.+.+..|+..++.
T Consensus 158 PGRllD~i~~-~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~-------------------------------- 204 (513)
T COG0513 158 PGRLLDLIKR-GKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPP-------------------------------- 204 (513)
T ss_pred ccHHHHHHHc-CCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCc--------------------------------
Confidence 9999999998 4789999999999999999999999999999998764
Q ss_pred CCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCcc-ccCccccceeeeecCCCC-cHHHHHHHHHhcCCCcEEE
Q 010111 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR-YKLPERLESYKLICESKL-KPLYLVALLQSLGEEKCIV 337 (518)
Q Consensus 260 ~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~lV 337 (518)
..|+++||||++..+..+....+.+|..+...... ......+.++++.+.... |...|..+++.....++||
T Consensus 205 ------~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IV 278 (513)
T COG0513 205 ------DRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIV 278 (513)
T ss_pred ------ccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEE
Confidence 23899999999999999999999999988777332 236678888888888765 9999999999888889999
Q ss_pred EcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCcc
Q 010111 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417 (518)
Q Consensus 338 f~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~ 417 (518)
||+++..++.++..|...+ +++..+||++++.+|..+++.|++|+.+||||||+++||||||++++|||||+|.+++
T Consensus 279 F~~tk~~~~~l~~~l~~~g---~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e 355 (513)
T COG0513 279 FVRTKRLVEELAESLRKRG---FKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPE 355 (513)
T ss_pred EeCcHHHHHHHHHHHHHCC---CeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHH
Confidence 9999999999999999877 8999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhcccCCCCCcEEEEeecc-hhHHHHHHHHHHHhh
Q 010111 418 TYIHRAGRTARAGQLGRCFTLLHKD-EVCLVKRFKKLLQKA 457 (518)
Q Consensus 418 ~~~Qr~GR~gR~g~~g~~~~~~~~~-e~~~~~~~~~~l~~~ 457 (518)
.|+||+|||||+|+.|.+++|+++. |...+..+++.+...
T Consensus 356 ~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 356 DYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred HheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999986 888888888886553
No 7
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=7.3e-65 Score=477.87 Aligned_cols=353 Identities=29% Similarity=0.448 Sum_probs=327.5
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhc---
Q 010111 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--- 97 (518)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~--- 97 (518)
+..|+++| |+....+.|++.+|..||.+|.++|+..+ .|+|++..|.||||||++|++|++++|...
T Consensus 68 ~~kF~dlp------ls~~t~kgLke~~fv~~teiQ~~~Ip~aL----~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs 137 (758)
T KOG0343|consen 68 IKKFADLP------LSQKTLKGLKEAKFVKMTEIQRDTIPMAL----QGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWS 137 (758)
T ss_pred hhhHHhCC------CchHHHHhHhhcCCccHHHHHHhhcchhc----cCcccccccccCCCceeeehHHHHHHHHHcCCC
Confidence 34577777 88999999999999999999999966555 699999999999999999999999998763
Q ss_pred ccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEE
Q 010111 98 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (518)
Q Consensus 98 ~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv 177 (518)
+..|..+||++|||+||.|+++.+.+.+++.+++.+++.||........++ .+.+|+|
T Consensus 138 ~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi----------------------~~mNILV 195 (758)
T KOG0343|consen 138 PTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI----------------------SQMNILV 195 (758)
T ss_pred CCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh----------------------hcCCeEE
Confidence 456888999999999999999999999999999999999999877665443 4679999
Q ss_pred eCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhcccccc
Q 010111 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (518)
Q Consensus 178 ~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (518)
||||+|++++.....++.+++.++|+||||+|+++||...+..|++.++..
T Consensus 196 CTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~----------------------------- 246 (758)
T KOG0343|consen 196 CTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKK----------------------------- 246 (758)
T ss_pred echHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChh-----------------------------
Confidence 999999999999888899999999999999999999999999999988743
Q ss_pred CCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCC-ccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEE
Q 010111 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336 (518)
Q Consensus 258 ~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~l 336 (518)
.|+++||||.+..+..++...+.+|.++.+.. .....|..+.++++.++...|...|..+++.+...+.|
T Consensus 247 ---------RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~i 317 (758)
T KOG0343|consen 247 ---------RQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSI 317 (758)
T ss_pred ---------heeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceE
Confidence 38999999999999999999999999998884 44788999999999999999999999999999999999
Q ss_pred EEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCc
Q 010111 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 416 (518)
Q Consensus 337 Vf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~ 416 (518)
||++|.+++..+++.++.+ .+++++..+||.|++..|.++...|.....-||+|||+++||+|+|.|++||++|+|.++
T Consensus 318 VF~SscKqvkf~~e~F~rl-rpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv 396 (758)
T KOG0343|consen 318 VFLSSCKQVKFLYEAFCRL-RPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDV 396 (758)
T ss_pred EEEehhhHHHHHHHHHHhc-CCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhH
Confidence 9999999999999999887 467999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhcccCCCCCcEEEEeecchh
Q 010111 417 KTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (518)
Q Consensus 417 ~~~~Qr~GR~gR~g~~g~~~~~~~~~e~ 444 (518)
++|+||+||++|.+..|.+++++++.+.
T Consensus 397 ~tYIHRvGRtAR~~~~G~sll~L~psEe 424 (758)
T KOG0343|consen 397 DTYIHRVGRTARYKERGESLLMLTPSEE 424 (758)
T ss_pred HHHHHHhhhhhcccCCCceEEEEcchhH
Confidence 9999999999999999999999999985
No 8
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.6e-64 Score=471.13 Aligned_cols=352 Identities=32% Similarity=0.493 Sum_probs=317.9
Q ss_pred CCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcc---cCCccEEEEcCc
Q 010111 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPT 110 (518)
Q Consensus 34 ~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~---~~~~~~lil~Pt 110 (518)
.|++.+.+++++|||.++|++|..+++ .++.|+|+++.|.||||||++|++|+++.+.+.+ .++..++|++||
T Consensus 88 ~LS~~t~kAi~~~GF~~MT~VQ~~ti~----pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PT 163 (543)
T KOG0342|consen 88 SLSPLTLKAIKEMGFETMTPVQQKTIP----PLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPT 163 (543)
T ss_pred ccCHHHHHHHHhcCccchhHHHHhhcC----ccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEeccc
Confidence 399999999999999999999998754 4556999999999999999999999999988753 356789999999
Q ss_pred HHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhc
Q 010111 111 RDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 189 (518)
Q Consensus 111 ~~La~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~ 189 (518)
|+||.|++.+++++.+.. ++.+..+.||+....... ++..+++|+|+|||+|.+++++
T Consensus 164 RELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~---------------------kl~k~~niliATPGRLlDHlqN 222 (543)
T KOG0342|consen 164 RELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEAD---------------------KLVKGCNILIATPGRLLDHLQN 222 (543)
T ss_pred HHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHH---------------------HhhccccEEEeCCchHHhHhhc
Confidence 999999999999999888 899999999998766544 3456899999999999999999
Q ss_pred CCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceee
Q 010111 190 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269 (518)
Q Consensus 190 ~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (518)
...+.+.+++++|+||||++++.+|.+.+++|+..++... |+
T Consensus 223 t~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~r--------------------------------------qt 264 (543)
T KOG0342|consen 223 TSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQR--------------------------------------QT 264 (543)
T ss_pred CCcchhhccceeEeecchhhhhcccHHHHHHHHHhccccc--------------------------------------ee
Confidence 8888888999999999999999999999999999987432 88
Q ss_pred EEEeEeecCChhhhhhccCCC-CeEEeeCCc-cccCccccceeeeecCCCCcHHHHHHHHHhcCC-CcEEEEcCChhhHH
Q 010111 270 MVLSATLTQDPNKLAQLDLHH-PLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQSLGE-EKCIVFTSSVESTH 346 (518)
Q Consensus 270 i~~SaT~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~-~~~lVf~~s~~~~~ 346 (518)
++||||.+..+..+....+.. |..+.+... .....+.+.+.+++++...++..++.+++++.. .++||||+|...+.
T Consensus 265 ~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk 344 (543)
T KOG0342|consen 265 LLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVK 344 (543)
T ss_pred eEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHH
Confidence 999999999999999887765 777766543 344556788888899988889999999997765 89999999999999
Q ss_pred HHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhc
Q 010111 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426 (518)
Q Consensus 347 ~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~ 426 (518)
.+++.|+... ++|..+||++++..|..+...|++.+..||||||+++||+|+|+|++||+||+|.++.+|+||+|||
T Consensus 345 ~~~~lL~~~d---lpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRT 421 (543)
T KOG0342|consen 345 FHAELLNYID---LPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRT 421 (543)
T ss_pred HHHHHHhhcC---CchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccc
Confidence 9999999654 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEEeecchhHHHHHHH
Q 010111 427 ARAGQLGRCFTLLHKDEVCLVKRFK 451 (518)
Q Consensus 427 gR~g~~g~~~~~~~~~e~~~~~~~~ 451 (518)
||.|..|.++.++.|.|..+++.++
T Consensus 422 aR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 422 AREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred cccCCCceEEEEeChhHHHHHHHHh
Confidence 9999999999999999998888777
No 9
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-64 Score=450.40 Aligned_cols=363 Identities=29% Similarity=0.450 Sum_probs=322.8
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccC
Q 010111 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (518)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~ 100 (518)
..+|+.+ ||++|+.+.++.+|+.+|||+|..|+|.|++ |+|++-+|.||||||.+|.+|++++|..++ .
T Consensus 6 ~~~F~~L------Gl~~Wlve~l~~l~i~~pTpiQ~~cIpkILe----Grdcig~AkTGsGKT~AFaLPil~rLsedP-~ 74 (442)
T KOG0340|consen 6 AKPFSIL------GLSPWLVEQLKALGIKKPTPIQQACIPKILE----GRDCIGCAKTGSGKTAAFALPILNRLSEDP-Y 74 (442)
T ss_pred cCchhhc------CccHHHHHHHHHhcCCCCCchHhhhhHHHhc----ccccccccccCCCcchhhhHHHHHhhccCC-C
Confidence 4456666 5999999999999999999999999998885 999999999999999999999999999874 5
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
+..++|++|||+||.|+.+.|..+.+..++++.+++||.+.-.+.. .+..++|++|+||
T Consensus 75 giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~---------------------~L~~rPHvVvatP 133 (442)
T KOG0340|consen 75 GIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAA---------------------ILSDRPHVVVATP 133 (442)
T ss_pred cceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhh---------------------hcccCCCeEecCc
Confidence 6789999999999999999999999999999999999998665533 4667889999999
Q ss_pred hHHHHhHhcCC---CCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhcccccc
Q 010111 181 GRLMDHINATR---GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (518)
Q Consensus 181 ~~l~~~l~~~~---~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (518)
|++.+++.+.. .+.++++.++|+||||++++..|...++.+.+.++..
T Consensus 134 GRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~----------------------------- 184 (442)
T KOG0340|consen 134 GRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPKP----------------------------- 184 (442)
T ss_pred cccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccCCCc-----------------------------
Confidence 99999998852 3468999999999999999999999999998877643
Q ss_pred CCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEee-CCccccCccccceeeeecCCCCcHHHHHHHHHhcC---CC
Q 010111 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT-GETRYKLPERLESYKLICESKLKPLYLVALLQSLG---EE 333 (518)
Q Consensus 258 ~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~---~~ 333 (518)
.|.++||||+++....+.......+..+.. .......++.+.+.++.++...|..+++.+++... .+
T Consensus 185 ---------RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~ 255 (442)
T KOG0340|consen 185 ---------RQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENG 255 (442)
T ss_pred ---------cceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCc
Confidence 388999999999988887776665332222 23445677888999999999999999999998553 57
Q ss_pred cEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCC
Q 010111 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 413 (518)
Q Consensus 334 ~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p 413 (518)
.++||+++..+|+.++..|.... +.+..+||.|++.+|...+.+|+++..+||||||+++||+|||.|++|||||.|
T Consensus 256 simIFvnttr~cQ~l~~~l~~le---~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diP 332 (442)
T KOG0340|consen 256 SIMIFVNTTRECQLLSMTLKNLE---VRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIP 332 (442)
T ss_pred eEEEEeehhHHHHHHHHHHhhhc---eeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCC
Confidence 89999999999999999999766 999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHHh
Q 010111 414 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQK 456 (518)
Q Consensus 414 ~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~ 456 (518)
.++.+|+||+||++|+|+.|.+++|+++.|...+..+++-+.+
T Consensus 333 r~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igk 375 (442)
T KOG0340|consen 333 RDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGK 375 (442)
T ss_pred CCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999877777776654
No 10
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=3.9e-64 Score=470.65 Aligned_cols=393 Identities=26% Similarity=0.411 Sum_probs=339.0
Q ss_pred CCcccCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhh
Q 010111 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (518)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~ 96 (518)
.|.++.+|+..+ ++.++++++...||..|+|+|..|+|. .++.+|+|..|.||||||++|++|++..+..
T Consensus 240 lpnplrnwEE~~------~P~e~l~~I~~~~y~eptpIqR~aipl----~lQ~rD~igvaETgsGktaaf~ipLl~~Iss 309 (673)
T KOG0333|consen 240 LPNPLRNWEESG------FPLELLSVIKKPGYKEPTPIQRQAIPL----GLQNRDPIGVAETGSGKTAAFLIPLLIWISS 309 (673)
T ss_pred CCccccChhhcC------CCHHHHHHHHhcCCCCCchHHHhhccc----hhccCCeeeEEeccCCccccchhhHHHHHHc
Confidence 366777777775 899999999999999999999999764 4468999999999999999999999988866
Q ss_pred cc--------cCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHh
Q 010111 97 RA--------VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 168 (518)
Q Consensus 97 ~~--------~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (518)
.+ ..++++++++|||+|++|+.++-.+|++.++++++.++||.+..++.- .
T Consensus 310 lP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~f---------------------q 368 (673)
T KOG0333|consen 310 LPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGF---------------------Q 368 (673)
T ss_pred CCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhh---------------------h
Confidence 43 247899999999999999999999999999999999999999887643 3
Q ss_pred hcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccch
Q 010111 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK 248 (518)
Q Consensus 169 ~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (518)
+..+|+|+|+||++|.+.+.+ ..+-++...+||+||||+|+|++|.+.+..++..++..+...-.+...-.. ...+
T Consensus 369 ls~gceiviatPgrLid~Len-r~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~---~~~~ 444 (673)
T KOG0333|consen 369 LSMGCEIVIATPGRLIDSLEN-RYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEE---RVRK 444 (673)
T ss_pred hhccceeeecCchHHHHHHHH-HHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHH---HHHh
Confidence 567899999999999999998 567788999999999999999999999999999988765432111111000 0000
Q ss_pred hhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHH
Q 010111 249 TIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 328 (518)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~ 328 (518)
.+. ....-.|++.||||+++.+..++..++.+|+.+..+....+. ..+++.......+.|...|..++.
T Consensus 445 ---------~~~-~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~-~rveQ~v~m~~ed~k~kkL~eil~ 513 (673)
T KOG0333|consen 445 ---------NFS-SSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPT-PRVEQKVEMVSEDEKRKKLIEILE 513 (673)
T ss_pred ---------hcc-cccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCc-cchheEEEEecchHHHHHHHHHHH
Confidence 000 011224899999999999999999999999999888765443 557777777788888999999999
Q ss_pred hcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEE
Q 010111 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 408 (518)
Q Consensus 329 ~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI 408 (518)
+....++|||+|+++.|+.+++.|.+.+ +.+..+||+-++++|+.++..|+.|..+||||||+++||||||+|++||
T Consensus 514 ~~~~ppiIIFvN~kk~~d~lAk~LeK~g---~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVi 590 (673)
T KOG0333|consen 514 SNFDPPIIIFVNTKKGADALAKILEKAG---YKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVI 590 (673)
T ss_pred hCCCCCEEEEEechhhHHHHHHHHhhcc---ceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceee
Confidence 9888999999999999999999999877 9999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHHhhc
Q 010111 409 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQKAD 458 (518)
Q Consensus 409 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~~~ 458 (518)
|||++.|..+|+||+|||||+|+.|.+++|+++.|...+..+.+.+.+.-
T Consensus 591 nydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~es~ 640 (673)
T KOG0333|consen 591 NYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRESV 640 (673)
T ss_pred ecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999988888888887643
No 11
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.1e-62 Score=502.88 Aligned_cols=371 Identities=29% Similarity=0.461 Sum_probs=320.8
Q ss_pred CCCcccCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhh
Q 010111 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (518)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~ 95 (518)
..|.+..+|++++ +++.++++|.++||.+|||+|.+||+.++. |+|++++||||||||++|++|++.++.
T Consensus 124 ~~p~p~~~f~~~~------l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~----G~dvI~~ApTGSGKTlaylLP~l~~i~ 193 (545)
T PTZ00110 124 NVPKPVVSFEYTS------FPDYILKSLKNAGFTEPTPIQVQGWPIALS----GRDMIGIAETGSGKTLAFLLPAIVHIN 193 (545)
T ss_pred CCCcccCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCCEEEEeCCCChHHHHHHHHHHHHHH
Confidence 3466677777765 899999999999999999999999998874 999999999999999999999998876
Q ss_pred hcc----cCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcC
Q 010111 96 NRA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (518)
Q Consensus 96 ~~~----~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (518)
... ..++.+|||+||++||.|+.+.+.+++...++++.+++|+.+...+.. .+..
T Consensus 194 ~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~---------------------~l~~ 252 (545)
T PTZ00110 194 AQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIY---------------------ALRR 252 (545)
T ss_pred hcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHH---------------------HHHc
Confidence 532 246789999999999999999999999888899999999988665543 3446
Q ss_pred CCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhh
Q 010111 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251 (518)
Q Consensus 172 ~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (518)
+++|+|+||++|.+++.. ....+.++++||+||||+|++.+|...+..++..+.
T Consensus 253 ~~~IlVaTPgrL~d~l~~-~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~------------------------- 306 (545)
T PTZ00110 253 GVEILIACPGRLIDFLES-NVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIR------------------------- 306 (545)
T ss_pred CCCEEEECHHHHHHHHHc-CCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCC-------------------------
Confidence 789999999999999987 457789999999999999999999999988887653
Q ss_pred ccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCC-CCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhc
Q 010111 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330 (518)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 330 (518)
+..|++++|||++.....+....+. .+..+............+.+....+....|...|..++...
T Consensus 307 -------------~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~ 373 (545)
T PTZ00110 307 -------------PDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRI 373 (545)
T ss_pred -------------CCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHh
Confidence 2238899999999888777776664 56666655433333445666666667777888888888765
Q ss_pred --CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEE
Q 010111 331 --GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 408 (518)
Q Consensus 331 --~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI 408 (518)
...++||||++++.|+.+++.|...+ +.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++||
T Consensus 374 ~~~~~k~LIF~~t~~~a~~l~~~L~~~g---~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI 450 (545)
T PTZ00110 374 MRDGDKILIFVETKKGADFLTKELRLDG---WPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVI 450 (545)
T ss_pred cccCCeEEEEecChHHHHHHHHHHHHcC---CcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEE
Confidence 46799999999999999999998765 7899999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHHhhcC
Q 010111 409 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQKADN 459 (518)
Q Consensus 409 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~~~~ 459 (518)
+||+|.+...|+||+||+||+|+.|.+++|++++|...++.+.+.+++.++
T Consensus 451 ~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q 501 (545)
T PTZ00110 451 NFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQ 501 (545)
T ss_pred EeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999999999988664
No 12
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.2e-62 Score=491.26 Aligned_cols=366 Identities=27% Similarity=0.431 Sum_probs=312.9
Q ss_pred CcccCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhc
Q 010111 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (518)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~ 97 (518)
+.....|++++ |++.+.++|..+||..|+|+|.+||+.++. |+|++++||||||||++|++|+++.+...
T Consensus 4 ~~~~~~f~~~~------l~~~l~~~l~~~g~~~pt~iQ~~aip~il~----g~dvi~~ApTGsGKTla~llp~l~~l~~~ 73 (423)
T PRK04837 4 HLTEQKFSDFA------LHPQVVEALEKKGFHNCTPIQALALPLTLA----GRDVAGQAQTGTGKTMAFLTATFHYLLSH 73 (423)
T ss_pred cCCCCCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCcEEEECCCCchHHHHHHHHHHHHHHhc
Confidence 44445666664 999999999999999999999999988774 99999999999999999999999988653
Q ss_pred c------cCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcC
Q 010111 98 A------VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (518)
Q Consensus 98 ~------~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (518)
. ..++++||++||++||.|+++.+..++...++++..++|+.+...+.. .+..
T Consensus 74 ~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---------------------~l~~ 132 (423)
T PRK04837 74 PAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK---------------------VLES 132 (423)
T ss_pred ccccccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---------------------HhcC
Confidence 2 134689999999999999999999999999999999999987665543 3445
Q ss_pred CCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhh
Q 010111 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251 (518)
Q Consensus 172 ~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (518)
+++|+|+||++|.+++.. ..+.+++++++|+||||++++.+|...+..++..++...
T Consensus 133 ~~~IlV~TP~~l~~~l~~-~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~---------------------- 189 (423)
T PRK04837 133 GVDILIGTTGRLIDYAKQ-NHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPAN---------------------- 189 (423)
T ss_pred CCCEEEECHHHHHHHHHc-CCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCcc----------------------
Confidence 789999999999999987 567899999999999999999999988888887654211
Q ss_pred ccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcC
Q 010111 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG 331 (518)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 331 (518)
..+.+++|||++.....+....+.+|..+...... .....+.+.........|...+..++....
T Consensus 190 --------------~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~-~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~ 254 (423)
T PRK04837 190 --------------QRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQTLIEEEW 254 (423)
T ss_pred --------------ceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCC-cCCCceeEEEEeCCHHHHHHHHHHHHHhcC
Confidence 12568999999988888887778888777654432 223345555555566677888888888777
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcC
Q 010111 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 411 (518)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~ 411 (518)
..++||||+++..|+.+++.|...+ +.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++||+||
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~g---~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d 331 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAADG---HRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYD 331 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCC---CcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeC
Confidence 7899999999999999999998765 8999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHH
Q 010111 412 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQ 455 (518)
Q Consensus 412 ~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~ 455 (518)
+|.+...|+||+||+||.|+.|.+++|++++|...+..+++.+.
T Consensus 332 ~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~ 375 (423)
T PRK04837 332 LPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIG 375 (423)
T ss_pred CCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999877776665543
No 13
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-63 Score=431.41 Aligned_cols=363 Identities=24% Similarity=0.439 Sum_probs=327.8
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhccc
Q 010111 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (518)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~ 99 (518)
...+|+++. |.+++++.+...||++|+.+|+.|++.|+ .|+|++++|..|+|||.+|.+.+++.+.-+ .
T Consensus 25 v~~~F~~Mg------l~edlLrgiY~yGfekPS~IQqrAi~~Il----kGrdViaQaqSGTGKTa~~si~vlq~~d~~-~ 93 (400)
T KOG0328|consen 25 VIPTFDDMG------LKEDLLRGIYAYGFEKPSAIQQRAIPQIL----KGRDVIAQAQSGTGKTATFSISVLQSLDIS-V 93 (400)
T ss_pred cccchhhcC------chHHHHHHHHHhccCCchHHHhhhhhhhh----cccceEEEecCCCCceEEEEeeeeeecccc-c
Confidence 445577774 99999999999999999999999988777 499999999999999999999999876554 3
Q ss_pred CCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeC
Q 010111 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (518)
Q Consensus 100 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~T 179 (518)
+...++|++||||||.|+.+.+..++...++.+..+.||.+..+..+. +..+.+++.+|
T Consensus 94 r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikk---------------------ld~G~hvVsGt 152 (400)
T KOG0328|consen 94 RETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKK---------------------LDYGQHVVSGT 152 (400)
T ss_pred ceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhh---------------------hcccceEeeCC
Confidence 456899999999999999999999999999999999999997776553 44678999999
Q ss_pred ChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCC
Q 010111 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (518)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (518)
|+++++++.+ +.+....+.++|+||||.|++.+|.+++-.++..++
T Consensus 153 PGrv~dmikr-~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp--------------------------------- 198 (400)
T KOG0328|consen 153 PGRVLDMIKR-RSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLP--------------------------------- 198 (400)
T ss_pred CchHHHHHHh-ccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCC---------------------------------
Confidence 9999999998 567888999999999999999999999999999886
Q ss_pred CCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCC-cHHHHHHHHHhcCCCcEEEE
Q 010111 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLYLVALLQSLGEEKCIVF 338 (518)
Q Consensus 260 ~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~lVf 338 (518)
|..|.+++|||++.++.+....+..+|+.+.+...+... +.+.+|++.++.++ |+..|..+.....-.+++||
T Consensus 199 -----~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltl-EgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIF 272 (400)
T KOG0328|consen 199 -----PGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTL-EGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIF 272 (400)
T ss_pred -----CCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCch-hhhhhheeeechhhhhHhHHHHHhhhhehheEEEE
Confidence 344899999999999999999999999998887765433 55777777776555 99999999998888899999
Q ss_pred cCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccc
Q 010111 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418 (518)
Q Consensus 339 ~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~ 418 (518)
|||+..++.+.+.+++.. +.|..+||+|++++|+.+++.|++|+.+||++||+-+||+|+|.+++|||||+|.+...
T Consensus 273 cnTk~kVdwLtekm~~~n---ftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~ 349 (400)
T KOG0328|consen 273 CNTKRKVDWLTEKMREAN---FTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNREL 349 (400)
T ss_pred ecccchhhHHHHHHHhhC---ceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHH
Confidence 999999999999998765 89999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHHhh
Q 010111 419 YIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQKA 457 (518)
Q Consensus 419 ~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~~ 457 (518)
|+||+||.||.|+.|.++.|+..+|...++.++++..-.
T Consensus 350 YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~ 388 (400)
T KOG0328|consen 350 YIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQ 388 (400)
T ss_pred HhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999888888887653
No 14
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.4e-63 Score=448.23 Aligned_cols=376 Identities=28% Similarity=0.465 Sum_probs=331.2
Q ss_pred CCcccCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhh
Q 010111 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (518)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~ 96 (518)
.|.|...|+++. +-.+++.+.+++.||.+|+|+|.+|||.++ +|.|++.+|.||+|||++|++|-+-++..
T Consensus 214 IPnP~ctFddAF-----q~~pevmenIkK~GFqKPtPIqSQaWPI~L----QG~DliGVAQTgtgKtL~~L~pg~ihi~a 284 (629)
T KOG0336|consen 214 IPNPVCTFDDAF-----QCYPEVMENIKKTGFQKPTPIQSQAWPILL----QGIDLIGVAQTGTGKTLAFLLPGFIHIDA 284 (629)
T ss_pred CCCCcCcHHHHH-----hhhHHHHHHHHhccCCCCCcchhcccceee----cCcceEEEEecCCCcCHHHhccceeeeec
Confidence 466676677664 577999999999999999999999998766 59999999999999999999998866544
Q ss_pred c-----ccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcC
Q 010111 97 R-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (518)
Q Consensus 97 ~-----~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (518)
. ...++.+|+++|||+|+.|+.-+..++.- .+.+..+++|+.+...+.. .+..
T Consensus 285 qp~~~~qr~~p~~lvl~ptreLalqie~e~~kysy-ng~ksvc~ygggnR~eqie---------------------~lkr 342 (629)
T KOG0336|consen 285 QPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSY-NGLKSVCVYGGGNRNEQIE---------------------DLKR 342 (629)
T ss_pred cchhhhccCCCceEEEeccHHHHHHHHhHHhHhhh-cCcceEEEecCCCchhHHH---------------------HHhc
Confidence 3 23578899999999999999888887644 3788899999988887765 4567
Q ss_pred CCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhh
Q 010111 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251 (518)
Q Consensus 172 ~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (518)
+.+|+++||++|.++... +..++..+.++|+||||+|++++|..++..|+-.+.
T Consensus 343 gveiiiatPgrlndL~~~-n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiR------------------------- 396 (629)
T KOG0336|consen 343 GVEIIIATPGRLNDLQMD-NVINLASITYLVLDEADRMLDMGFEPQIRKILLDIR------------------------- 396 (629)
T ss_pred CceEEeeCCchHhhhhhc-CeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcC-------------------------
Confidence 889999999999998887 578899999999999999999999999999886554
Q ss_pred ccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhc-
Q 010111 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL- 330 (518)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~- 330 (518)
|..|+++.|||+|..+..++..++..|.+..++.-....-..+.+..+...+..|...+..+++..
T Consensus 397 -------------PDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms 463 (629)
T KOG0336|consen 397 -------------PDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMS 463 (629)
T ss_pred -------------CcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcC
Confidence 455899999999999999999999999999888776666677778888888888888888887765
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEc
Q 010111 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410 (518)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 410 (518)
+..++||||.++..|+.+..-|.-.+ +.+..+||+-.+.+|+..++.|++|+++||||||+++||+|+|++++|+||
T Consensus 464 ~ndKvIiFv~~K~~AD~LSSd~~l~g---i~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~Ny 540 (629)
T KOG0336|consen 464 SNDKVIIFVSRKVMADHLSSDFCLKG---ISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNY 540 (629)
T ss_pred CCceEEEEEechhhhhhccchhhhcc---cchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeecc
Confidence 46799999999999999988776544 899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHHhhcCCCCCccCCCchh
Q 010111 411 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQKADNDSCPIHSIPSSL 471 (518)
Q Consensus 411 ~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 471 (518)
|+|.+.+.|+||+||+||+|+.|.+++|++..|....+.+.++|++.++ ++|.++
T Consensus 541 DFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQ------evPdeL 595 (629)
T KOG0336|consen 541 DFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQ------EVPDEL 595 (629)
T ss_pred CCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhh------hCcHHH
Confidence 9999999999999999999999999999999999999999999998765 566554
No 15
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=6.3e-61 Score=488.85 Aligned_cols=375 Identities=26% Similarity=0.464 Sum_probs=320.4
Q ss_pred CcccCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhc
Q 010111 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (518)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~ 97 (518)
|.+..+|+++. +++.+.++|..+||..|||+|.+||+.++ .|+|++++||||||||++|++|++.++...
T Consensus 117 p~pi~~f~~~~------l~~~l~~~L~~~g~~~ptpiQ~~aip~il----~g~dviv~ApTGSGKTlayllPil~~l~~~ 186 (518)
T PLN00206 117 PPPILSFSSCG------LPPKLLLNLETAGYEFPTPIQMQAIPAAL----SGRSLLVSADTGSGKTASFLVPIISRCCTI 186 (518)
T ss_pred CchhcCHHhCC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHh----cCCCEEEEecCCCCccHHHHHHHHHHHHhh
Confidence 45666677664 99999999999999999999999999887 499999999999999999999999887532
Q ss_pred ------ccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcC
Q 010111 98 ------AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (518)
Q Consensus 98 ------~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (518)
...++++||++||++||.|+.+.++.+....++++..++||.....+.. .+..
T Consensus 187 ~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~---------------------~l~~ 245 (518)
T PLN00206 187 RSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLY---------------------RIQQ 245 (518)
T ss_pred ccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHH---------------------HhcC
Confidence 1246789999999999999999999998888899999999887666543 3456
Q ss_pred CCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhh
Q 010111 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251 (518)
Q Consensus 172 ~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (518)
+++|+|+||++|.+++.+ ....++++++||+||||+|++.+|...+..++..++
T Consensus 246 ~~~IiV~TPgrL~~~l~~-~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~------------------------- 299 (518)
T PLN00206 246 GVELIVGTPGRLIDLLSK-HDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS------------------------- 299 (518)
T ss_pred CCCEEEECHHHHHHHHHc-CCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-------------------------
Confidence 789999999999999987 467899999999999999999999988888776542
Q ss_pred ccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcC
Q 010111 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG 331 (518)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 331 (518)
..|.+++|||++..+..+......++..+...... .....+.+....+....+...+..++....
T Consensus 300 --------------~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~-~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~ 364 (518)
T PLN00206 300 --------------QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPN-RPNKAVKQLAIWVETKQKKQKLFDILKSKQ 364 (518)
T ss_pred --------------CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCC-CCCcceeEEEEeccchhHHHHHHHHHHhhc
Confidence 12789999999998888888888888877765543 223445666667777777778888877543
Q ss_pred --CCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEE
Q 010111 332 --EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 409 (518)
Q Consensus 332 --~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~ 409 (518)
..++||||+++..++.+++.|... .++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++||+
T Consensus 365 ~~~~~~iVFv~s~~~a~~l~~~L~~~--~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~ 442 (518)
T PLN00206 365 HFKPPAVVFVSSRLGADLLANAITVV--TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII 442 (518)
T ss_pred ccCCCEEEEcCCchhHHHHHHHHhhc--cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE
Confidence 468999999999999999999753 2378999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHHhhcCCCCCccCCCchhh
Q 010111 410 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQKADNDSCPIHSIPSSLI 472 (518)
Q Consensus 410 ~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 472 (518)
||+|.+..+|+||+||+||.|..|.+++|++++|...+..+.+.++..++ .+|+++.
T Consensus 443 ~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~------~vp~~l~ 499 (518)
T PLN00206 443 FDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGA------AIPRELA 499 (518)
T ss_pred eCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCC------CCCHHHH
Confidence 99999999999999999999999999999999999888889888887654 4665554
No 16
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-61 Score=443.50 Aligned_cols=390 Identities=29% Similarity=0.415 Sum_probs=340.5
Q ss_pred CCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcc-----cCCccEEEEc
Q 010111 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVL 108 (518)
Q Consensus 34 ~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~-----~~~~~~lil~ 108 (518)
||++.+++++.++||.+||-+|..|||.++ +|+|++..|.||||||.+|++|+++.+...+ ..++.++|++
T Consensus 25 gLD~RllkAi~~lG~ekpTlIQs~aIplaL----EgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLv 100 (569)
T KOG0346|consen 25 GLDSRLLKAITKLGWEKPTLIQSSAIPLAL----EGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILV 100 (569)
T ss_pred CCCHHHHHHHHHhCcCCcchhhhcccchhh----cCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEe
Confidence 599999999999999999999999987766 5999999999999999999999999987642 3578899999
Q ss_pred CcHHHHHHHHHHHHHhccccC--ceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHh
Q 010111 109 PTRDLALQVKDVFAAIAPAVG--LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186 (518)
Q Consensus 109 Pt~~La~Q~~~~~~~~~~~~~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~ 186 (518)
||+||++|++..+.++...++ +++.-+..+.+.... ..++...++|+|+||++++.+
T Consensus 101 PTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~---------------------~~~L~d~pdIvV~TP~~ll~~ 159 (569)
T KOG0346|consen 101 PTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVN---------------------SVALMDLPDIVVATPAKLLRH 159 (569)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHH---------------------HHHHccCCCeEEeChHHHHHH
Confidence 999999999999998866553 333333333332222 235667899999999999999
Q ss_pred HhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCc
Q 010111 187 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266 (518)
Q Consensus 187 l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (518)
+..+....++.++++|+||||.+++-||.+.+..+.+.++. .
T Consensus 160 ~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr--------------------------------------~ 201 (569)
T KOG0346|consen 160 LAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPR--------------------------------------I 201 (569)
T ss_pred HhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhCCc--------------------------------------h
Confidence 98854467889999999999999999999999999998873 2
Q ss_pred eeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHH-hcCCCcEEEEcCChhhH
Q 010111 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-SLGEEKCIVFTSSVEST 345 (518)
Q Consensus 267 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-~~~~~~~lVf~~s~~~~ 345 (518)
.|.++||||++.++..+....+++|+++.......+.+..+.+|.+.|.+.+|+..++.+++ +.-.+++|||+|+++.|
T Consensus 202 ~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~ 281 (569)
T KOG0346|consen 202 YQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRC 281 (569)
T ss_pred hhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhh
Confidence 38899999999999999999999999999998888889999999999999999999999988 55689999999999999
Q ss_pred HHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcC--------------------------------
Q 010111 346 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-------------------------------- 393 (518)
Q Consensus 346 ~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-------------------------------- 393 (518)
.++.-.|+.+| ++..+++|.||..-|..+++.|..|-.+++||||
T Consensus 282 YrLkLfLeqFG---iksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D 358 (569)
T KOG0346|consen 282 YRLKLFLEQFG---IKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLD 358 (569)
T ss_pred HHHHHHHHHhC---cHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccC
Confidence 99999999988 9999999999999999999999999999999999
Q ss_pred ---ccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHHhh----cCCCCCccC
Q 010111 394 ---AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQKA----DNDSCPIHS 466 (518)
Q Consensus 394 ---~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~~----~~~~~~~~~ 466 (518)
-++||||+.+|..|+|||+|.+...|+||+|||+|+|++|.+++|+.+.+......++..+... +.+.+.+..
T Consensus 359 ~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d~~~~~~~qilqPY~ 438 (569)
T KOG0346|consen 359 KESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILKDENRQEGRQILQPYQ 438 (569)
T ss_pred chhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHhhHHhhcCcccccccc
Confidence 3579999999999999999999999999999999999999999999999987667777776653 233556677
Q ss_pred CCchhhhhhHHHHHHHHHHHHHH
Q 010111 467 IPSSLIESLRPVYKSALDKLKET 489 (518)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~ 489 (518)
+..+.++.|+.+.+++.++....
T Consensus 439 f~~eevesfryR~eD~~ravTkv 461 (569)
T KOG0346|consen 439 FRMEEVESFRYRAEDALRAVTKV 461 (569)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 77788999999988887776543
No 17
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.7e-60 Score=488.18 Aligned_cols=368 Identities=26% Similarity=0.417 Sum_probs=314.0
Q ss_pred CCcccCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhh
Q 010111 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (518)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~ 96 (518)
+|.....|+++. |++.++++|.++||..|||+|.++|+.+++ |+|++++||||||||++|++|+++.+..
T Consensus 4 ~~~~~~~f~~l~------l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~----G~Dvi~~ApTGSGKTlafllpil~~l~~ 73 (572)
T PRK04537 4 KPLTDLTFSSFD------LHPALLAGLESAGFTRCTPIQALTLPVALP----GGDVAGQAQTGTGKTLAFLVAVMNRLLS 73 (572)
T ss_pred CccCCCChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEEcCCCCcHHHHHHHHHHHHHHh
Confidence 343334466664 999999999999999999999999988774 9999999999999999999999998865
Q ss_pred cc------cCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhc
Q 010111 97 RA------VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 170 (518)
Q Consensus 97 ~~------~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (518)
.. ...+++|||+||++|+.|+++.+..++...++++..++|+.+...+.. .+.
T Consensus 74 ~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~---------------------~l~ 132 (572)
T PRK04537 74 RPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRE---------------------LLQ 132 (572)
T ss_pred cccccccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---------------------HHh
Confidence 31 124689999999999999999999999988999999999988766543 234
Q ss_pred CCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhh
Q 010111 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 250 (518)
Q Consensus 171 ~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (518)
.+++|+|+||++|++++.....+.+..+++|||||||+|++.+|...+..++..++...
T Consensus 133 ~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~~--------------------- 191 (572)
T PRK04537 133 QGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERG--------------------- 191 (572)
T ss_pred CCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHHhccccc---------------------
Confidence 56899999999999999875557788999999999999999999998888887764211
Q ss_pred hccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhc
Q 010111 251 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330 (518)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 330 (518)
..|.+++|||++..+..+....+..|..+...... .....+.+.........|...+..++...
T Consensus 192 ---------------~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~k~~~L~~ll~~~ 255 (572)
T PRK04537 192 ---------------TRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET-ITAARVRQRIYFPADEEKQTLLLGLLSRS 255 (572)
T ss_pred ---------------CceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc-ccccceeEEEEecCHHHHHHHHHHHHhcc
Confidence 12789999999988888877777777655443332 22344556666666777888888888877
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEc
Q 010111 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410 (518)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 410 (518)
...++||||+++..++.+++.|...+ +.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+|
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~g---~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIny 332 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERHG---YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNY 332 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHcC---CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEc
Confidence 78899999999999999999998765 899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHH
Q 010111 411 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQ 455 (518)
Q Consensus 411 ~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~ 455 (518)
|.|.+...|+||+||+||.|+.|.+++|+++.+...+..+++.+.
T Consensus 333 d~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~ 377 (572)
T PRK04537 333 DLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIE 377 (572)
T ss_pred CCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999998877777766654
No 18
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-61 Score=452.11 Aligned_cols=385 Identities=34% Similarity=0.499 Sum_probs=323.4
Q ss_pred CCcccCCCCCCCCCCCCCCCHHHHHHHHh-CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhh
Q 010111 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (518)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~ 95 (518)
++.....|....|..+ ||++.+.+.|+. |++..||.+|.+|||.++. |+|++|.++||||||++|++|+++.|.
T Consensus 126 k~v~e~~fts~~f~~L-GL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~----grD~lV~aQTGSGKTLAYllPiVq~Lq 200 (708)
T KOG0348|consen 126 KQVSEAPFTSAAFASL-GLHPHLVSHLNTKMKISAPTSVQKQAIPVLLE----GRDALVRAQTGSGKTLAYLLPIVQSLQ 200 (708)
T ss_pred ccccccccccccchhc-CCCHHHHHHHHHHhccCccchHhhcchhhhhc----CcceEEEcCCCCcccHHHHHHHHHHHH
Confidence 3334444555556665 899999999996 7999999999999988875 999999999999999999999999987
Q ss_pred hcc-----cCCccEEEEcCcHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhh
Q 010111 96 NRA-----VRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 169 (518)
Q Consensus 96 ~~~-----~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (518)
... ..|+.+||++||||||.|+++.++++.+.+ .+-.+++.||....... .++
T Consensus 201 ~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEK---------------------ARL 259 (708)
T KOG0348|consen 201 AMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEK---------------------ARL 259 (708)
T ss_pred hcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHH---------------------HHH
Confidence 642 357889999999999999999999997765 45667888887654443 356
Q ss_pred cCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchh
Q 010111 170 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 249 (518)
Q Consensus 170 ~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (518)
+.+++|+|+|||+|++++.+...+.++.+++||+||||++++.||...+..|++.+.......
T Consensus 260 RKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e----------------- 322 (708)
T KOG0348|consen 260 RKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAE----------------- 322 (708)
T ss_pred hcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchh-----------------
Confidence 789999999999999999998889999999999999999999999999999999874321110
Q ss_pred hhccccccCCCC-CCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCC------------------------ccccCc
Q 010111 250 IRRCGVERGFKD-KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE------------------------TRYKLP 304 (518)
Q Consensus 250 ~~~~~~~~~~~~-~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~ 304 (518)
+.+ ...+..|.+++|||+++.+..+....+.+|+.+.... +.+.+|
T Consensus 323 ---------~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iP 393 (708)
T KOG0348|consen 323 ---------CKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIP 393 (708)
T ss_pred ---------cccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCc
Confidence 111 1112458899999999999999999999999887221 124567
Q ss_pred cccceeeeecCCCCcHHHHHHHHHhc----CCCcEEEEcCChhhHHHHHHHHhhcCC-------------------Ccee
Q 010111 305 ERLESYKLICESKLKPLYLVALLQSL----GEEKCIVFTSSVESTHRLCTLLNHFGE-------------------LRIK 361 (518)
Q Consensus 305 ~~~~~~~~~~~~~~k~~~l~~~l~~~----~~~~~lVf~~s~~~~~~l~~~L~~~~~-------------------~~~~ 361 (518)
+.+.+.+.++++..++..|..++.+. ...++|||+++.+.++.=+..|..... .+.+
T Consensus 394 eqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k 473 (708)
T KOG0348|consen 394 EQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLK 473 (708)
T ss_pred HHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcce
Confidence 77788888999999998888877643 456999999999999999888865210 2356
Q ss_pred EEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeec
Q 010111 362 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 441 (518)
Q Consensus 362 v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~ 441 (518)
+..+||+|.+++|..+++.|....-.||+|||+++||+|+|.|++||+||+|.+.++|+||+|||+|+|..|.++.|+.|
T Consensus 474 ~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P 553 (708)
T KOG0348|consen 474 FYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLP 553 (708)
T ss_pred EEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecc
Confidence 88999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHH
Q 010111 442 DEVCLVKRFKKL 453 (518)
Q Consensus 442 ~e~~~~~~~~~~ 453 (518)
.|.++++.++..
T Consensus 554 ~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 554 SEAEYVNYLKKH 565 (708)
T ss_pred cHHHHHHHHHhh
Confidence 999877766654
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.4e-60 Score=480.54 Aligned_cols=359 Identities=27% Similarity=0.424 Sum_probs=314.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCC
Q 010111 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (518)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~ 101 (518)
.+|++++ |++.+.++|..+||.+|+|+|.+||+.++. |+|++++||||||||++|++|+++.+... ...
T Consensus 4 ~~f~~l~------l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~----g~dvi~~a~TGsGKT~a~~lpil~~l~~~-~~~ 72 (460)
T PRK11776 4 TAFSTLP------LPPALLANLNELGYTEMTPIQAQSLPAILA----GKDVIAQAKTGSGKTAAFGLGLLQKLDVK-RFR 72 (460)
T ss_pred CChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHhhhc-cCC
Confidence 3466664 999999999999999999999999988774 89999999999999999999999998654 235
Q ss_pred ccEEEEcCcHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 102 LRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 102 ~~~lil~Pt~~La~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
.++||++||++|+.|+.+.++.++... ++++..++|+.+...+... +..+++|+|+||
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~---------------------l~~~~~IvV~Tp 131 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDS---------------------LEHGAHIIVGTP 131 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHH---------------------hcCCCCEEEECh
Confidence 579999999999999999999987654 6899999999987766443 446789999999
Q ss_pred hHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCC
Q 010111 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (518)
+++.+++.+ +.+.++++++||+||||+|++.+|...+..++..++.
T Consensus 132 ~rl~~~l~~-~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~--------------------------------- 177 (460)
T PRK11776 132 GRILDHLRK-GTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPA--------------------------------- 177 (460)
T ss_pred HHHHHHHHc-CCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCc---------------------------------
Confidence 999999987 5678899999999999999999999999988877652
Q ss_pred CCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcC
Q 010111 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 340 (518)
Q Consensus 261 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~ 340 (518)
..|.+++|||++.....+....+.+|..+...... ....+.+.++.++...|...+..++......++||||+
T Consensus 178 -----~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~ 250 (460)
T PRK11776 178 -----RRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH--DLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCN 250 (460)
T ss_pred -----ccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC--CCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEEC
Confidence 23789999999998888888888888877665432 23346667777777778889999998888889999999
Q ss_pred ChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchh
Q 010111 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 420 (518)
Q Consensus 341 s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~ 420 (518)
++..++.+++.|...+ +.+..+||++++.+|+.+++.|++|+.+|||||+++++|+|+|++++||+||+|.+...|+
T Consensus 251 t~~~~~~l~~~L~~~~---~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yi 327 (460)
T PRK11776 251 TKKECQEVADALNAQG---FSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHV 327 (460)
T ss_pred CHHHHHHHHHHHHhCC---CcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhh
Confidence 9999999999998766 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHHh
Q 010111 421 HRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQK 456 (518)
Q Consensus 421 Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~ 456 (518)
||+||+||+|+.|.+++|+++.|...++.+++.+..
T Consensus 328 qR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 328 HRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred hhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 999999999999999999999998777777776543
No 20
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.1e-60 Score=478.36 Aligned_cols=355 Identities=32% Similarity=0.499 Sum_probs=308.3
Q ss_pred CCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhccc-----CCccEEEEc
Q 010111 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-----RCLRALVVL 108 (518)
Q Consensus 34 ~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~-----~~~~~lil~ 108 (518)
+|++.+.++|.++||..|||+|.+|++.++. |+|++++||||||||++|++|+++.+..... ...++||++
T Consensus 7 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~----g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~ 82 (456)
T PRK10590 7 GLSPDILRAVAEQGYREPTPIQQQAIPAVLE----GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILT 82 (456)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEe
Confidence 4999999999999999999999999988774 8999999999999999999999999865321 235799999
Q ss_pred CcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHh
Q 010111 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188 (518)
Q Consensus 109 Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~ 188 (518)
||++||.|+.+.++.+....++.+..++|+.+...+.. .+...++|+|+||++|++++.
T Consensus 83 PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---------------------~l~~~~~IiV~TP~rL~~~~~ 141 (456)
T PRK10590 83 PTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM---------------------KLRGGVDVLVATPGRLLDLEH 141 (456)
T ss_pred CcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHH---------------------HHcCCCcEEEEChHHHHHHHH
Confidence 99999999999999999888999999999988776543 234578999999999999887
Q ss_pred cCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCcee
Q 010111 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (518)
Q Consensus 189 ~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (518)
. ..+.++++++||+||||++++.+|...+..++..++. ..|
T Consensus 142 ~-~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~--------------------------------------~~q 182 (456)
T PRK10590 142 Q-NAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPA--------------------------------------KRQ 182 (456)
T ss_pred c-CCcccccceEEEeecHHHHhccccHHHHHHHHHhCCc--------------------------------------cCe
Confidence 6 4577899999999999999999998888888766542 227
Q ss_pred eEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHH
Q 010111 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRL 348 (518)
Q Consensus 269 ~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l 348 (518)
.+++|||++.....+....+.+|..+...... .....+.++...++...+...+..++......++||||+++..++.+
T Consensus 183 ~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l 261 (456)
T PRK10590 183 NLLFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHL 261 (456)
T ss_pred EEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc-ccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHH
Confidence 89999999988888887788888766554332 23344556666667677777777777777778999999999999999
Q ss_pred HHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhccc
Q 010111 349 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428 (518)
Q Consensus 349 ~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR 428 (518)
++.|...+ +.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++||+|++|.+..+|+||+||+||
T Consensus 262 ~~~L~~~g---~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR 338 (456)
T PRK10590 262 AEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGR 338 (456)
T ss_pred HHHHHHCC---CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhcccccc
Confidence 99998765 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeecchhHHHHHHHHHHHh
Q 010111 429 AGQLGRCFTLLHKDEVCLVKRFKKLLQK 456 (518)
Q Consensus 429 ~g~~g~~~~~~~~~e~~~~~~~~~~l~~ 456 (518)
+|..|.+++|+..+|...++.+++.+..
T Consensus 339 ~g~~G~ai~l~~~~d~~~~~~ie~~l~~ 366 (456)
T PRK10590 339 AAATGEALSLVCVDEHKLLRDIEKLLKK 366 (456)
T ss_pred CCCCeeEEEEecHHHHHHHHHHHHHhcC
Confidence 9999999999999999888888877654
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=4.1e-60 Score=477.23 Aligned_cols=355 Identities=30% Similarity=0.473 Sum_probs=305.4
Q ss_pred CCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcc---cCCccEEEEcCc
Q 010111 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPT 110 (518)
Q Consensus 34 ~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~---~~~~~~lil~Pt 110 (518)
++++.+.++|.++||.+|+++|.+|++.++. |+|++++||||+|||++|++|+++.+.... ....++||++||
T Consensus 7 ~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt 82 (434)
T PRK11192 7 ELDESLLEALQDKGYTRPTAIQAEAIPPALD----GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPT 82 (434)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCc
Confidence 3999999999999999999999999988874 899999999999999999999999886532 234689999999
Q ss_pred HHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcC
Q 010111 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 190 (518)
Q Consensus 111 ~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~ 190 (518)
++|+.|+++.+..++...++++..++|+.....+.. .+..+++|+|+||++|++++..
T Consensus 83 ~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---------------------~l~~~~~IlV~Tp~rl~~~~~~- 140 (434)
T PRK11192 83 RELAMQVADQARELAKHTHLDIATITGGVAYMNHAE---------------------VFSENQDIVVATPGRLLQYIKE- 140 (434)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHH---------------------HhcCCCCEEEEChHHHHHHHHc-
Confidence 999999999999999999999999999988766543 3445789999999999999987
Q ss_pred CCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeE
Q 010111 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (518)
Q Consensus 191 ~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (518)
..+.+.++++||+||||+|++.+|...+..+...++. ..|.+
T Consensus 141 ~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~--------------------------------------~~q~~ 182 (434)
T PRK11192 141 ENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRW--------------------------------------RKQTL 182 (434)
T ss_pred CCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCcc--------------------------------------ccEEE
Confidence 5678899999999999999999999888888765431 12789
Q ss_pred EEeEeecCC-hhhhhhccCCCCeEEeeCCccccCccccceeeeecC-CCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHH
Q 010111 271 VLSATLTQD-PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRL 348 (518)
Q Consensus 271 ~~SaT~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l 348 (518)
++|||++.. ...+....+.+|..+...... .....+.+++..++ ...+...+..+++.....++||||+++..++.+
T Consensus 183 ~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l 261 (434)
T PRK11192 183 LFSATLEGDAVQDFAERLLNDPVEVEAEPSR-RERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHEL 261 (434)
T ss_pred EEEeecCHHHHHHHHHHHccCCEEEEecCCc-ccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHH
Confidence 999999753 566666677777776655433 22334555555444 456777888888776778999999999999999
Q ss_pred HHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhccc
Q 010111 349 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428 (518)
Q Consensus 349 ~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR 428 (518)
++.|...+ +.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+||+|.+...|+||+||+||
T Consensus 262 ~~~L~~~~---~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR 338 (434)
T PRK11192 262 AGWLRKAG---INCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGR 338 (434)
T ss_pred HHHHHhCC---CCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhccccccc
Confidence 99998765 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeecchhHHHHHHHHHHHh
Q 010111 429 AGQLGRCFTLLHKDEVCLVKRFKKLLQK 456 (518)
Q Consensus 429 ~g~~g~~~~~~~~~e~~~~~~~~~~l~~ 456 (518)
+|..|.+++|++..|...+..+++++..
T Consensus 339 ~g~~g~ai~l~~~~d~~~~~~i~~~~~~ 366 (434)
T PRK11192 339 AGRKGTAISLVEAHDHLLLGKIERYIEE 366 (434)
T ss_pred CCCCceEEEEecHHHHHHHHHHHHHHhc
Confidence 9999999999999999888888877654
No 22
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.3e-59 Score=482.05 Aligned_cols=353 Identities=27% Similarity=0.447 Sum_probs=308.9
Q ss_pred CCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHH
Q 010111 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (518)
Q Consensus 34 ~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~L 113 (518)
+|++.++++|.++||.+|+|+|.++|+.++. ++|++++||||||||++|++|+++.+... ...+++||++||++|
T Consensus 12 ~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~----g~dvl~~ApTGsGKT~af~lpll~~l~~~-~~~~~~LIL~PTreL 86 (629)
T PRK11634 12 GLKAPILEALNDLGYEKPSPIQAECIPHLLN----GRDVLGMAQTGSGKTAAFSLPLLHNLDPE-LKAPQILVLAPTREL 86 (629)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHHHHHHHHHHHHhhhc-cCCCeEEEEeCcHHH
Confidence 4999999999999999999999999988774 89999999999999999999999987653 345689999999999
Q ss_pred HHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCC
Q 010111 114 ALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (518)
Q Consensus 114 a~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~ 192 (518)
|.|+++.+..+.... ++++..++|+.+...+... +..+++|+|+||++|++++.+ ..
T Consensus 87 a~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~---------------------l~~~~~IVVgTPgrl~d~l~r-~~ 144 (629)
T PRK11634 87 AVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA---------------------LRQGPQIVVGTPGRLLDHLKR-GT 144 (629)
T ss_pred HHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHH---------------------hcCCCCEEEECHHHHHHHHHc-CC
Confidence 999999999987665 7899999999887666442 445789999999999999987 56
Q ss_pred CCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEE
Q 010111 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (518)
Q Consensus 193 ~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (518)
+.++++++||+||||.|++.+|...+..++..++. ..|.+++
T Consensus 145 l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~--------------------------------------~~q~llf 186 (629)
T PRK11634 145 LDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE--------------------------------------GHQTALF 186 (629)
T ss_pred cchhhceEEEeccHHHHhhcccHHHHHHHHHhCCC--------------------------------------CCeEEEE
Confidence 78999999999999999999999999988877642 2278999
Q ss_pred eEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHH
Q 010111 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (518)
Q Consensus 273 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L 352 (518)
|||++.....+...++.+|..+........ ...+.+.+.......|...|..++......++||||+++..++.+++.|
T Consensus 187 SAT~p~~i~~i~~~~l~~~~~i~i~~~~~~-~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L 265 (629)
T PRK11634 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTT-RPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEAL 265 (629)
T ss_pred EccCChhHHHHHHHHcCCCeEEEccCcccc-CCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHH
Confidence 999999988888888888877766544322 2345555566666778888888888777789999999999999999999
Q ss_pred hhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCC
Q 010111 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432 (518)
Q Consensus 353 ~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~ 432 (518)
...+ +.+..+||+|++.+|..++++|++|+++|||||+++++|||+|++++||+||+|.+...|+||+||+||+|+.
T Consensus 266 ~~~g---~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~ 342 (629)
T PRK11634 266 ERNG---YNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 342 (629)
T ss_pred HhCC---CCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCc
Confidence 8766 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeecchhHHHHHHHHHHH
Q 010111 433 GRCFTLLHKDEVCLVKRFKKLLQ 455 (518)
Q Consensus 433 g~~~~~~~~~e~~~~~~~~~~l~ 455 (518)
|.+++|+++.|...++.+++.++
T Consensus 343 G~ai~~v~~~e~~~l~~ie~~~~ 365 (629)
T PRK11634 343 GRALLFVENRERRLLRNIERTMK 365 (629)
T ss_pred ceEEEEechHHHHHHHHHHHHhC
Confidence 99999999999877777766544
No 23
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-61 Score=453.59 Aligned_cols=394 Identities=31% Similarity=0.459 Sum_probs=324.8
Q ss_pred CCCcccCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCC-CCEEEECCCCchHHHHhHHHHHHHh
Q 010111 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTL 94 (518)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~-~~~li~apTGsGKT~~~~l~~~~~l 94 (518)
+.+.+++.|.+++ ++..++.+|..+||..||++|...+|.++ .| .|++..|.||||||++|.+|+++.+
T Consensus 175 ~~~~DvsAW~~l~------lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai----~gk~DIlGaAeTGSGKTLAFGIPiv~~l 244 (731)
T KOG0347|consen 175 SSKVDVSAWKNLF------LPMEILRALSNLGFSRPTEIQSLVLPAAI----RGKVDILGAAETGSGKTLAFGIPIVERL 244 (731)
T ss_pred ccccChHHHhcCC------CCHHHHHHHHhcCCCCCccchhhcccHhh----ccchhcccccccCCCceeeecchhhhhh
Confidence 3455666676665 99999999999999999999999876665 46 8999999999999999999999955
Q ss_pred hhcc----------cCCcc--EEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCc
Q 010111 95 SNRA----------VRCLR--ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 162 (518)
Q Consensus 95 ~~~~----------~~~~~--~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (518)
.... ...++ +||++||||||.|+.+.+...++..++++..++||.+..++.+
T Consensus 245 ~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqR---------------- 308 (731)
T KOG0347|consen 245 LESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQR---------------- 308 (731)
T ss_pred hhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHH----------------
Confidence 4321 12344 9999999999999999999999999999999999999888754
Q ss_pred hhHHHhhcCCCcEEEeCChHHHHhHhcCCCC--CCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCccccc
Q 010111 163 EDVLQELQSAVDILVATPGRLMDHINATRGF--TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 240 (518)
Q Consensus 163 ~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~--~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 240 (518)
.+...++|+|+|||+|+.++.....+ .+.+++++|+||||+|+..|+.+.+..++..+.....+
T Consensus 309 -----lL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~--------- 374 (731)
T KOG0347|consen 309 -----LLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKN--------- 374 (731)
T ss_pred -----HHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcc---------
Confidence 34567899999999999999875442 58889999999999999999999999999988632211
Q ss_pred ccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChh---------------------hhhh-ccC-CCCeEEeeC
Q 010111 241 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN---------------------KLAQ-LDL-HHPLFLTTG 297 (518)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~---------------------~~~~-~~~-~~~~~~~~~ 297 (518)
+..|+++||||++-... .+.. ..+ .+|.++...
T Consensus 375 ------------------------~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t 430 (731)
T KOG0347|consen 375 ------------------------RQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLT 430 (731)
T ss_pred ------------------------cccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecC
Confidence 33489999999873311 1111 222 244554443
Q ss_pred CccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHH
Q 010111 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 377 (518)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~ 377 (518)
.. ......+....+.|+..+|..+|+.++..+ ++++|||||+++.+.+++-+|+..+ +....+|+.|.+++|...
T Consensus 431 ~q-~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry-PGrTlVF~NsId~vKRLt~~L~~L~---i~p~~LHA~M~QKqRLkn 505 (731)
T KOG0347|consen 431 PQ-SATASTLTESLIECPPLEKDLYLYYFLTRY-PGRTLVFCNSIDCVKRLTVLLNNLD---IPPLPLHASMIQKQRLKN 505 (731)
T ss_pred cc-hhHHHHHHHHhhcCCccccceeEEEEEeec-CCceEEEechHHHHHHHHHHHhhcC---CCCchhhHHHHHHHHHHh
Confidence 32 234455556667788888888888888877 5899999999999999999999766 899999999999999999
Q ss_pred HHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHHhh
Q 010111 378 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQKA 457 (518)
Q Consensus 378 ~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~~ 457 (518)
+++|++....||||||+++||+|||+|++||+|-.|.+.+.|+||.|||+|++..|..++|+.|.|...+.++.+-|++.
T Consensus 506 LEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~ 585 (731)
T KOG0347|consen 506 LEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKK 585 (731)
T ss_pred HHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888875
Q ss_pred cCCCCCccCCCchhhhhhHHHHH
Q 010111 458 DNDSCPIHSIPSSLIESLRPVYK 480 (518)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~ 480 (518)
. .++...+.....+.+..+..
T Consensus 586 ~--dlpifPv~~~~m~~lkeRvr 606 (731)
T KOG0347|consen 586 E--DLPIFPVETDIMDALKERVR 606 (731)
T ss_pred c--CCCceeccHHHHHHHHHHHH
Confidence 4 34445555555666665554
No 24
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-60 Score=451.41 Aligned_cols=370 Identities=29% Similarity=0.447 Sum_probs=324.0
Q ss_pred CCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhccc---------CCccE
Q 010111 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---------RCLRA 104 (518)
Q Consensus 34 ~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~---------~~~~~ 104 (518)
.+.+.+..+++..||..|+|+|+.+++.+. .|++++++|+||||||.+|++|++.++.+... ..+++
T Consensus 80 ~l~~~l~~ni~~~~~~~ptpvQk~sip~i~----~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~ 155 (482)
T KOG0335|consen 80 ILGEALAGNIKRSGYTKPTPVQKYSIPIIS----GGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRA 155 (482)
T ss_pred chhHHHhhccccccccCCCcceeeccceee----cCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCce
Confidence 378899999999999999999999976655 59999999999999999999999999887531 25799
Q ss_pred EEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHH
Q 010111 105 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 184 (518)
Q Consensus 105 lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~ 184 (518)
+|++|||||+.|++++.+++.-..++++...+|+.+...+.. .+..+|||+|||||+|.
T Consensus 156 lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~---------------------~~~~gcdIlvaTpGrL~ 214 (482)
T KOG0335|consen 156 LILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLR---------------------FIKRGCDILVATPGRLK 214 (482)
T ss_pred EEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhh---------------------hhccCccEEEecCchhh
Confidence 999999999999999999999888999999999988776654 35678999999999999
Q ss_pred HhHhcCCCCCCCcccEEEEechhHhhh-HhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCC
Q 010111 185 DHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 263 (518)
Q Consensus 185 ~~l~~~~~~~~~~~~~vViDEah~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (518)
+++.. +.+.+++++++|+||||+|+| .+|.+.+.+|+........
T Consensus 215 d~~e~-g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~--------------------------------- 260 (482)
T KOG0335|consen 215 DLIER-GKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPK--------------------------------- 260 (482)
T ss_pred hhhhc-ceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCc---------------------------------
Confidence 99998 678999999999999999999 9999999999987654331
Q ss_pred CCceeeEEEeEeecCChhhhhhccCCC-CeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcC----CC-----
Q 010111 264 YPRLVKMVLSATLTQDPNKLAQLDLHH-PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG----EE----- 333 (518)
Q Consensus 264 ~~~~~~i~~SaT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~----~~----- 333 (518)
...|+++||||.+.++..+...++.+ .+.+.+.... .....+.+....+.+..|...|+.++.... .+
T Consensus 261 -~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg-~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e 338 (482)
T KOG0335|consen 261 -NNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVG-STSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWE 338 (482)
T ss_pred -cceeEEEEeccCChhhhhhHHHHhhccceEEEEeeec-cccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccc
Confidence 23489999999999998877777765 4444444433 345667777788888999999999887443 23
Q ss_pred cEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCC
Q 010111 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 413 (518)
Q Consensus 334 ~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p 413 (518)
+++|||.+++.|..++.+|...+ ++...+||+.++.+|.+.++.|++|.+.+||||++++||+|+|+|++||+||+|
T Consensus 339 ~tlvFvEt~~~~d~l~~~l~~~~---~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP 415 (482)
T KOG0335|consen 339 KTLVFVETKRGADELAAFLSSNG---YPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMP 415 (482)
T ss_pred eEEEEeeccchhhHHHHHHhcCC---CCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecC
Confidence 89999999999999999999766 899999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHHhhcCCCCCccCCCchhhh
Q 010111 414 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQKADNDSCPIHSIPSSLIE 473 (518)
Q Consensus 414 ~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 473 (518)
.+..+|+||+|||||.|..|.++.|++..+....+.+.+++.+.++ .+|+++.+
T Consensus 416 ~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q------~vP~wl~~ 469 (482)
T KOG0335|consen 416 ADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQ------EVPQWLSE 469 (482)
T ss_pred cchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcc------cCcHHHHh
Confidence 9999999999999999999999999999999889999999999876 56666654
No 25
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-61 Score=424.59 Aligned_cols=353 Identities=27% Similarity=0.466 Sum_probs=324.1
Q ss_pred CCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHH
Q 010111 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (518)
Q Consensus 34 ~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~L 113 (518)
+|..+++..+-+.||..|+|+|.+++|.+ +.|+|+++.|..|+|||.+|++|+++.+... .....++|++|||||
T Consensus 91 ~Lkr~LLmgIfe~G~ekPSPiQeesIPia----LtGrdiLaRaKNGTGKT~a~~IP~Lekid~~-~~~IQ~~ilVPtrel 165 (459)
T KOG0326|consen 91 CLKRELLMGIFEKGFEKPSPIQEESIPIA----LTGRDILARAKNGTGKTAAYCIPVLEKIDPK-KNVIQAIILVPTREL 165 (459)
T ss_pred hhhHHHHHHHHHhccCCCCCcccccccee----ecchhhhhhccCCCCCccceechhhhhcCcc-ccceeEEEEeecchh
Confidence 58999999999999999999999986544 4699999999999999999999999988664 356789999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCC
Q 010111 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (518)
Q Consensus 114 a~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~ 193 (518)
|-|+.+.+.++.+++++.+.+.+||++..+..- ++.+..+++|+||++++++..+ +.-
T Consensus 166 ALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~---------------------Rl~~~VH~~vgTPGRIlDL~~K-gVa 223 (459)
T KOG0326|consen 166 ALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIM---------------------RLNQTVHLVVGTPGRILDLAKK-GVA 223 (459)
T ss_pred hHHHHHHHHHHhcccCeEEEEecCCccccccee---------------------eecCceEEEEcCChhHHHHHhc-ccc
Confidence 999999999999999999999999999777643 4567789999999999999998 566
Q ss_pred CCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEe
Q 010111 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (518)
Q Consensus 194 ~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (518)
.+++..++|+||||.+++..|.+.+++++..++... |.+++|
T Consensus 224 ~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~r--------------------------------------QillyS 265 (459)
T KOG0326|consen 224 DLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKER--------------------------------------QILLYS 265 (459)
T ss_pred cchhceEEEechhhhhhchhhhhHHHHHHHhCCccc--------------------------------------eeeEEe
Confidence 799999999999999999999999999999987543 889999
Q ss_pred EeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHh
Q 010111 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353 (518)
Q Consensus 274 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~ 353 (518)
||.|-.+..+....+.+|..+....+ ..+..+.+|+..+.+..|...|..++.+..-.+.||||||...++.+++.+.
T Consensus 266 ATFP~tVk~Fm~~~l~kPy~INLM~e--Ltl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKIT 343 (459)
T KOG0326|consen 266 ATFPLTVKGFMDRHLKKPYEINLMEE--LTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKIT 343 (459)
T ss_pred cccchhHHHHHHHhccCcceeehhhh--hhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHH
Confidence 99999999999999999999887764 3456788999999999999999999998888999999999999999999999
Q ss_pred hcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCC
Q 010111 354 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433 (518)
Q Consensus 354 ~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g 433 (518)
+.| +.+.++|+.|-++.|..++..|++|.++.|||||.+.||||++.+++|||||+|++.++|+||+||+||.|..|
T Consensus 344 elG---yscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG 420 (459)
T KOG0326|consen 344 ELG---YSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG 420 (459)
T ss_pred hcc---chhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc
Confidence 877 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeecchhHHHHHHHHHHHh
Q 010111 434 RCFTLLHKDEVCLVKRFKKLLQK 456 (518)
Q Consensus 434 ~~~~~~~~~e~~~~~~~~~~l~~ 456 (518)
.++.+++-+|...+.++++-+..
T Consensus 421 lAInLityedrf~L~~IE~eLGt 443 (459)
T KOG0326|consen 421 LAINLITYEDRFNLYRIEQELGT 443 (459)
T ss_pred eEEEEEehhhhhhHHHHHHHhcc
Confidence 99999999999777777766543
No 26
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.6e-58 Score=469.44 Aligned_cols=359 Identities=30% Similarity=0.436 Sum_probs=309.6
Q ss_pred CCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhccc------CCccEEEE
Q 010111 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV------RCLRALVV 107 (518)
Q Consensus 34 ~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~------~~~~~lil 107 (518)
+|++.+.++|.++||..|+++|.+||+.++ .|+|+++.||||||||++|++|+++.+.+... ...++|||
T Consensus 93 ~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~----~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil 168 (475)
T PRK01297 93 NLAPELMHAIHDLGFPYCTPIQAQVLGYTL----AGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALII 168 (475)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEE
Confidence 599999999999999999999999998876 49999999999999999999999999876431 14689999
Q ss_pred cCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhH
Q 010111 108 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (518)
Q Consensus 108 ~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l 187 (518)
+||++|+.|+.+.++.+.+..++++..++|+.+...+...+ ....++|+|+||++|++++
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~--------------------~~~~~~Iiv~TP~~Ll~~~ 228 (475)
T PRK01297 169 APTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQL--------------------EARFCDILVATPGRLLDFN 228 (475)
T ss_pred eCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHH--------------------hCCCCCEEEECHHHHHHHH
Confidence 99999999999999999988899999999998776655432 2346899999999999988
Q ss_pred hcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCce
Q 010111 188 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (518)
Q Consensus 188 ~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (518)
.+ ....++++++|||||||++++.+|...+..++..++.. ...
T Consensus 229 ~~-~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~------------------------------------~~~ 271 (475)
T PRK01297 229 QR-GEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRK------------------------------------EER 271 (475)
T ss_pred Hc-CCcccccCceEEechHHHHHhcccHHHHHHHHHhCCCC------------------------------------CCc
Confidence 76 45678999999999999999999888888887665321 112
Q ss_pred eeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHH
Q 010111 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 347 (518)
Q Consensus 268 ~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~ 347 (518)
|.+++|||++.+...+...++.+|..+...... .....+.+....+....+...+..++......++||||+++..++.
T Consensus 272 q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~ 350 (475)
T PRK01297 272 QTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN-VASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRR 350 (475)
T ss_pred eEEEEEeecCHHHHHHHHHhccCCEEEEeccCc-CCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHH
Confidence 789999999988888888888888777655433 2223344555556667788888888887777899999999999999
Q ss_pred HHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcc
Q 010111 348 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427 (518)
Q Consensus 348 l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~g 427 (518)
+++.|...+ +.+..+||++++.+|.++++.|++|+++|||||+++++|||+|++++||+|++|.|...|+||+||+|
T Consensus 351 l~~~L~~~~---~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaG 427 (475)
T PRK01297 351 IEERLVKDG---INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTG 427 (475)
T ss_pred HHHHHHHcC---CCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccC
Confidence 999998765 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEeecchhHHHHHHHHHHHhh
Q 010111 428 RAGQLGRCFTLLHKDEVCLVKRFKKLLQKA 457 (518)
Q Consensus 428 R~g~~g~~~~~~~~~e~~~~~~~~~~l~~~ 457 (518)
|.|+.|.+++|++++|...+..+++++...
T Consensus 428 R~g~~g~~i~~~~~~d~~~~~~~~~~~~~~ 457 (475)
T PRK01297 428 RAGASGVSISFAGEDDAFQLPEIEELLGRK 457 (475)
T ss_pred CCCCCceEEEEecHHHHHHHHHHHHHhCCC
Confidence 999999999999999988888888877653
No 27
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-57 Score=422.33 Aligned_cols=369 Identities=28% Similarity=0.425 Sum_probs=327.8
Q ss_pred CCcccCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhh
Q 010111 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (518)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~ 96 (518)
-|.++++|+++. ++..|..++.+..|.+|||+|.+++|. .+.|++++-.|.||||||.+|+.|++-++..
T Consensus 218 ~~rpvtsfeh~g------fDkqLm~airk~Ey~kptpiq~qalpt----alsgrdvigIAktgSgktaAfi~pm~~himd 287 (731)
T KOG0339|consen 218 PPRPVTSFEHFG------FDKQLMTAIRKSEYEKPTPIQCQALPT----ALSGRDVIGIAKTGSGKTAAFIWPMIVHIMD 287 (731)
T ss_pred CCCCcchhhhcC------chHHHHHHHhhhhcccCCccccccccc----ccccccchheeeccCcchhHHHHHHHHHhcc
Confidence 366788888885 888999999999999999999998554 4469999999999999999999999999877
Q ss_pred cc----cCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCC
Q 010111 97 RA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172 (518)
Q Consensus 97 ~~----~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (518)
.+ ..++..||++|||+||.|++.++++|++..++++++++||.+..++... +..+
T Consensus 288 q~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~---------------------Lk~g 346 (731)
T KOG0339|consen 288 QPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKE---------------------LKEG 346 (731)
T ss_pred hhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHh---------------------hhcC
Confidence 53 4688999999999999999999999999999999999999999888764 5578
Q ss_pred CcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhc
Q 010111 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRR 252 (518)
Q Consensus 173 ~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (518)
+.||||||++|++++.- +..++.+++++||||||+|.+.+|..++..|...+.
T Consensus 347 ~EivVaTPgRlid~Vkm-Katn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir-------------------------- 399 (731)
T KOG0339|consen 347 AEIVVATPGRLIDMVKM-KATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR-------------------------- 399 (731)
T ss_pred CeEEEechHHHHHHHHh-hcccceeeeEEEEechhhhhccccHHHHHHHHhhcC--------------------------
Confidence 99999999999999987 678999999999999999999999999999998875
Q ss_pred cccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceee-eecCCCCcHHHHHHHHH-hc
Q 010111 253 CGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYK-LICESKLKPLYLVALLQ-SL 330 (518)
Q Consensus 253 ~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~~~l~~~l~-~~ 330 (518)
|..|+++||||+...+..++...+..|+.+..+.-.. ....+.+.. ++.+...|...|..-|. ..
T Consensus 400 ------------pdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vge-an~dITQ~V~V~~s~~~Kl~wl~~~L~~f~ 466 (731)
T KOG0339|consen 400 ------------PDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGE-ANEDITQTVSVCPSEEKKLNWLLRHLVEFS 466 (731)
T ss_pred ------------CcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhc-cccchhheeeeccCcHHHHHHHHHHhhhhc
Confidence 4459999999999999999999999999887764333 334455444 44455677777766554 44
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEc
Q 010111 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410 (518)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 410 (518)
..+++|||+..+..++.++..|.-.+ +.+..+||++.+.+|.+++..|+++.+.|||+||++++|+|||++..||+|
T Consensus 467 S~gkvlifVTKk~~~e~i~a~Lklk~---~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvny 543 (731)
T KOG0339|consen 467 SEGKVLIFVTKKADAEEIAANLKLKG---FNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNY 543 (731)
T ss_pred cCCcEEEEEeccCCHHHHHHHhcccc---ceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecc
Confidence 57899999999999999999998766 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHHhhcC
Q 010111 411 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQKADN 459 (518)
Q Consensus 411 ~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~~~~ 459 (518)
|.-.+.+.|.||+||+||+|..|.+++++++.|..+.-.+.+.|+...+
T Consensus 544 D~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQ 592 (731)
T KOG0339|consen 544 DFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQ 592 (731)
T ss_pred cccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccc
Confidence 9999999999999999999999999999999999988888888887765
No 28
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.3e-58 Score=418.19 Aligned_cols=381 Identities=27% Similarity=0.449 Sum_probs=327.8
Q ss_pred hcccCCccC-CCCCCcccCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHH
Q 010111 5 KKKSMPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83 (518)
Q Consensus 5 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT 83 (518)
..|.+.++. =-..|.+..+|.++- ++..+++.|++-|+..|||+|.+-+|.++ .|+|++..|-||||||
T Consensus 152 vRk~~~I~veGd~ipPPIksF~eMK------FP~~~L~~lk~KGI~~PTpIQvQGlPvvL----sGRDmIGIAfTGSGKT 221 (610)
T KOG0341|consen 152 VRKQLHILVEGDDIPPPIKSFKEMK------FPKPLLRGLKKKGIVHPTPIQVQGLPVVL----SGRDMIGIAFTGSGKT 221 (610)
T ss_pred HHHhheEEeeCCCCCCchhhhhhcc------CCHHHHHHHHhcCCCCCCceeecCcceEe----ecCceeeEEeecCCce
Confidence 344455433 345678888999987 78899999999999999999999866555 6999999999999999
Q ss_pred HHhHHHHHHHhhhc-------ccCCccEEEEcCcHHHHHHHHHHHHHhcccc------CceEEEeecCCchHHHHHHhhc
Q 010111 84 LSYALPIVQTLSNR-------AVRCLRALVVLPTRDLALQVKDVFAAIAPAV------GLSVGLAVGQSSIADEISELIK 150 (518)
Q Consensus 84 ~~~~l~~~~~l~~~-------~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~------~~~v~~~~g~~~~~~~~~~~~~ 150 (518)
++|.+|++...... ...++..||+||+|+||.|.++.+..++..+ .++..++.||.+...+..
T Consensus 222 lvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~---- 297 (610)
T KOG0341|consen 222 LVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLD---- 297 (610)
T ss_pred EEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHH----
Confidence 99999998765442 2457899999999999999999888876544 367888999999888765
Q ss_pred CCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccc
Q 010111 151 RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 230 (518)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~ 230 (518)
.+..+.+|+|+||++|.+++.+ +..+++-.+++++||||+|++.+|.+.+..|+..+....
T Consensus 298 -----------------~v~~GvHivVATPGRL~DmL~K-K~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QR- 358 (610)
T KOG0341|consen 298 -----------------VVRRGVHIVVATPGRLMDMLAK-KIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQR- 358 (610)
T ss_pred -----------------HHhcCeeEEEcCcchHHHHHHH-hhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhh-
Confidence 4567899999999999999998 667888999999999999999999999999998876432
Q ss_pred cccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCcccccee
Q 010111 231 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY 310 (518)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (518)
|+++||||+|..+..++..-+..|+.++++.......+.++.
T Consensus 359 -------------------------------------QTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQe- 400 (610)
T KOG0341|consen 359 -------------------------------------QTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQE- 400 (610)
T ss_pred -------------------------------------heeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHH-
Confidence 899999999999999999999999999988765444333333
Q ss_pred eeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEE
Q 010111 311 KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390 (518)
Q Consensus 311 ~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLv 390 (518)
...+..+.|..+|++.+++. ..++||||..+..++.+.++|--.| +.+..+||+-++++|...++.|+.|+-+|||
T Consensus 401 vEyVkqEaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKG---VEavaIHGGKDQedR~~ai~afr~gkKDVLV 476 (610)
T KOG0341|consen 401 VEYVKQEAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKG---VEAVAIHGGKDQEDRHYAIEAFRAGKKDVLV 476 (610)
T ss_pred HHHHHhhhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHHcc---ceeEEeecCcchhHHHHHHHHHhcCCCceEE
Confidence 33455677888888888766 4699999999999999999998666 8999999999999999999999999999999
Q ss_pred EcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeec-chhHHHHHHHHHHHhhcCC
Q 010111 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK-DEVCLVKRFKKLLQKADND 460 (518)
Q Consensus 391 aT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~-~e~~~~~~~~~~l~~~~~~ 460 (518)
|||+++.|+|+|++.+|||||.|....+|+||+||+||.|+.|.+.+|+++ .+...+-.++.++.+.++.
T Consensus 477 ATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~ 547 (610)
T KOG0341|consen 477 ATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQE 547 (610)
T ss_pred EecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999985 5566777888888887763
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=8.7e-56 Score=443.05 Aligned_cols=353 Identities=24% Similarity=0.414 Sum_probs=296.2
Q ss_pred CCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHH
Q 010111 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (518)
Q Consensus 34 ~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~L 113 (518)
|+++.+.+++..+||..|+|+|.+||+.++. |+|++++||||||||++|++|+++.+... ..+.++||++|+++|
T Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~----~~d~ii~apTGsGKT~~~~l~~l~~~~~~-~~~~~~lil~Pt~~L 108 (401)
T PTZ00424 34 KLNEDLLRGIYSYGFEKPSAIQQRGIKPILD----GYDTIGQAQSGTGKTATFVIAALQLIDYD-LNACQALILAPTREL 108 (401)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhcCC-CCCceEEEECCCHHH
Confidence 4999999999999999999999999988774 89999999999999999999999887543 245689999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCC
Q 010111 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (518)
Q Consensus 114 a~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~ 193 (518)
+.|+.+.+..++...++.+..+.|+........ .+..+++|+|+||+++.+.+.+ ...
T Consensus 109 ~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~Ivv~Tp~~l~~~l~~-~~~ 166 (401)
T PTZ00424 109 AQQIQKVVLALGDYLKVRCHACVGGTVVRDDIN---------------------KLKAGVHMVVGTPGRVYDMIDK-RHL 166 (401)
T ss_pred HHHHHHHHHHHhhhcCceEEEEECCcCHHHHHH---------------------HHcCCCCEEEECcHHHHHHHHh-CCc
Confidence 999999999998888888888888887655433 3345679999999999999887 456
Q ss_pred CCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEe
Q 010111 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (518)
Q Consensus 194 ~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (518)
.++++++||+||||++++.++...+..++..++ +..|.+++|
T Consensus 167 ~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~--------------------------------------~~~~~i~~S 208 (401)
T PTZ00424 167 RVDDLKLFILDEADEMLSRGFKGQIYDVFKKLP--------------------------------------PDVQVALFS 208 (401)
T ss_pred ccccccEEEEecHHHHHhcchHHHHHHHHhhCC--------------------------------------CCcEEEEEE
Confidence 789999999999999999888877776665442 233889999
Q ss_pred EeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCC-CCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHH
Q 010111 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES-KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (518)
Q Consensus 274 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L 352 (518)
||+++.........+..|..+....... ....+.+++...+. ..+...+..++......++||||+++..++.+++.|
T Consensus 209 AT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l 287 (401)
T PTZ00424 209 ATMPNEILELTTKFMRDPKRILVKKDEL-TLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKM 287 (401)
T ss_pred ecCCHHHHHHHHHHcCCCEEEEeCCCCc-ccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHH
Confidence 9998877777766776776654443322 22334444444433 345566667777666789999999999999999999
Q ss_pred hhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCC
Q 010111 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432 (518)
Q Consensus 353 ~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~ 432 (518)
...+ +.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||++|+|.+...|+||+||+||.|+.
T Consensus 288 ~~~~---~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~ 364 (401)
T PTZ00424 288 HERD---FTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRK 364 (401)
T ss_pred HHCC---CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCC
Confidence 8765 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeecchhHHHHHHHHHHH
Q 010111 433 GRCFTLLHKDEVCLVKRFKKLLQ 455 (518)
Q Consensus 433 g~~~~~~~~~e~~~~~~~~~~l~ 455 (518)
|.|++|++++|...++.+++...
T Consensus 365 G~~i~l~~~~~~~~~~~~e~~~~ 387 (401)
T PTZ00424 365 GVAINFVTPDDIEQLKEIERHYN 387 (401)
T ss_pred ceEEEEEcHHHHHHHHHHHHHHC
Confidence 99999999999977777766554
No 30
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-54 Score=391.31 Aligned_cols=362 Identities=24% Similarity=0.359 Sum_probs=305.9
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhccc
Q 010111 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (518)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~ 99 (518)
.+++|+++. |.|++++.+..|+|..|+.+|..|+|.++.. ..+|++.++..|+|||.+|.+.++.++.-. .
T Consensus 88 S~ksFeeL~------LkPellkgly~M~F~kPskIQe~aLPlll~~--Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~-~ 158 (477)
T KOG0332|consen 88 SAKSFEELR------LKPELLKGLYAMKFQKPSKIQETALPLLLAE--PPQNLIAQSQSGTGKTAAFVLTMLSRVDPD-V 158 (477)
T ss_pred ccccHHhhC------CCHHHHhHHHHhccCCcchHHHhhcchhhcC--CchhhhhhhcCCCchhHHHHHHHHHhcCcc-c
Confidence 455677775 9999999999999999999999998877642 358999999999999999999999887554 3
Q ss_pred CCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeC
Q 010111 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (518)
Q Consensus 100 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~T 179 (518)
..+.++.|+|||+||.|+.+.+.+++++.++.+....-+.....- ..=..+|+|+|
T Consensus 159 ~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG------------------------~~i~eqIviGT 214 (477)
T KOG0332|consen 159 VVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG------------------------NKLTEQIVIGT 214 (477)
T ss_pred cCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC------------------------CcchhheeeCC
Confidence 567899999999999999999999999988888777766521110 00124899999
Q ss_pred ChHHHHhHhcCCCCCCCcccEEEEechhHhhhH-hHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccC
Q 010111 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLRE-AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (518)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (518)
|+.+.+++...+.+.+..++++|+||||.|++. ||++.--.|...++.
T Consensus 215 PGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~------------------------------- 263 (477)
T KOG0332|consen 215 PGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPR------------------------------- 263 (477)
T ss_pred CccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCC-------------------------------
Confidence 999999998866778999999999999999875 577666666655542
Q ss_pred CCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeec-CCCCcHHHHHHHHHhcCCCcEEE
Q 010111 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC-ESKLKPLYLVALLQSLGEEKCIV 337 (518)
Q Consensus 259 ~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~lV 337 (518)
..|.+++|||....+..++.....++..+........+. .+.++++.| ....|...|.++.....-+..||
T Consensus 264 -------~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~-~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiI 335 (477)
T KOG0332|consen 264 -------NQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALD-NIKQLYVLCACRDDKYQALVNLYGLLTIGQSII 335 (477)
T ss_pred -------cceEEeeechhHHHHHHHHHHhcCCCceeeeehhhcccc-chhhheeeccchhhHHHHHHHHHhhhhhhheEE
Confidence 238899999999999999999999888887777665554 455555554 56789999999887777789999
Q ss_pred EcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCC---
Q 010111 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA--- 414 (518)
Q Consensus 338 f~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~--- 414 (518)
||.+++.|..++..+...| +.|..+||+|...+|..++++|+.|..+|||+|++++||||++.|++|||||+|.
T Consensus 336 Fc~tk~ta~~l~~~m~~~G---h~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~ 412 (477)
T KOG0332|consen 336 FCHTKATAMWLYEEMRAEG---HQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYT 412 (477)
T ss_pred EEeehhhHHHHHHHHHhcC---ceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccC
Confidence 9999999999999999877 8999999999999999999999999999999999999999999999999999995
Q ss_pred ---CccchhhhhhhcccCCCCCcEEEEeec-chhHHHHHHHHHHHh
Q 010111 415 ---YIKTYIHRAGRTARAGQLGRCFTLLHK-DEVCLVKRFKKLLQK 456 (518)
Q Consensus 415 ---s~~~~~Qr~GR~gR~g~~g~~~~~~~~-~e~~~~~~~~~~l~~ 456 (518)
+..+|+||+||+||.|+.|.++.|++. ...+.++.++++++.
T Consensus 413 ~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~ 458 (477)
T KOG0332|consen 413 GEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNM 458 (477)
T ss_pred CCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhh
Confidence 467999999999999999999999965 456667778887765
No 31
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-54 Score=438.45 Aligned_cols=370 Identities=30% Similarity=0.483 Sum_probs=327.6
Q ss_pred CCCcccCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhh
Q 010111 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (518)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~ 95 (518)
..|.++.+|.+++ ++..++..++++||..|+|+|.+|||+|+ .|+|+|.+|.||||||++|++|++.+..
T Consensus 359 ~~pkpv~sW~q~g------l~~~il~tlkkl~y~k~~~IQ~qAiP~Im----sGrdvIgvakTgSGKT~af~LPmirhi~ 428 (997)
T KOG0334|consen 359 ECPKPVTSWTQCG------LSSKILETLKKLGYEKPTPIQAQAIPAIM----SGRDVIGVAKTGSGKTLAFLLPMIRHIK 428 (997)
T ss_pred CCCcccchHhhCC------chHHHHHHHHHhcCCCCcchhhhhcchhc----cCcceEEeeccCCccchhhhcchhhhhh
Confidence 4688888999996 99999999999999999999999988776 5999999999999999999999998776
Q ss_pred hcc----cCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcC
Q 010111 96 NRA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (518)
Q Consensus 96 ~~~----~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (518)
..+ ..++.++|++|||+|+.|+.+++++|++.+++.+++++|+.....++.. +.+
T Consensus 429 dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiae---------------------lkR 487 (997)
T KOG0334|consen 429 DQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAE---------------------LKR 487 (997)
T ss_pred cCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHH---------------------Hhc
Confidence 543 3588999999999999999999999999999999999999998888764 556
Q ss_pred CCcEEEeCChHHHHhHhcC--CCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchh
Q 010111 172 AVDILVATPGRLMDHINAT--RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 249 (518)
Q Consensus 172 ~~~Iiv~Tp~~l~~~l~~~--~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (518)
++.|+||||+++++.+... +..++.+..++|+||||+|++.+|.+.+..|++.++
T Consensus 488 g~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlr----------------------- 544 (997)
T KOG0334|consen 488 GAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLR----------------------- 544 (997)
T ss_pred CCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcc-----------------------
Confidence 7999999999999988543 234567777999999999999999999888887764
Q ss_pred hhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecC-CCCcHHHHHHHHH
Q 010111 250 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQ 328 (518)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~ 328 (518)
+..|++++|||++..+..++...++.|+.+.++.. ..+...+.+...++. +..|+..|..++.
T Consensus 545 ---------------pdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~-svV~k~V~q~v~V~~~e~eKf~kL~eLl~ 608 (997)
T KOG0334|consen 545 ---------------PDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGR-SVVCKEVTQVVRVCAIENEKFLKLLELLG 608 (997)
T ss_pred ---------------hhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccc-eeEeccceEEEEEecCchHHHHHHHHHHH
Confidence 33489999999999999999999999998777744 355566666666666 8999999999987
Q ss_pred hc-CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEE
Q 010111 329 SL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 407 (518)
Q Consensus 329 ~~-~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~V 407 (518)
.. ...++||||.+...|..+.+.|...+ +.+..+||+.++.+|..+++.|++|.+++||+|+++++|+|++.+.+|
T Consensus 609 e~~e~~~tiiFv~~qe~~d~l~~~L~~ag---~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lv 685 (997)
T KOG0334|consen 609 ERYEDGKTIIFVDKQEKADALLRDLQKAG---YNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILV 685 (997)
T ss_pred HHhhcCCEEEEEcCchHHHHHHHHHHhcC---cchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEE
Confidence 44 47899999999999999999999766 888889999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHHhhc
Q 010111 408 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQKAD 458 (518)
Q Consensus 408 I~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~~~ 458 (518)
||||+|.....|+||+|||||+|+.|.+++|+++.+..+.-.|.+.+...+
T Consensus 686 vnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~ 736 (997)
T KOG0334|consen 686 VNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSK 736 (997)
T ss_pred EEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhcc
Confidence 999999999999999999999999999999999988888888888885443
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.8e-52 Score=437.86 Aligned_cols=355 Identities=20% Similarity=0.265 Sum_probs=271.5
Q ss_pred CCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHH
Q 010111 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (518)
Q Consensus 35 l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La 114 (518)
+++.+.++|+++||.+||++|.+|++.++ .|+|+++.+|||||||++|++|+++.+.+. ++.++||++||++|+
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il----~G~nvvv~apTGSGKTla~~LPiL~~l~~~--~~~~aL~l~PtraLa 94 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAH----AGRHVVVATGTASGKSLAYQLPVLSALADD--PRATALYLAPTKALA 94 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHH----CCCCEEEECCCCCcHHHHHHHHHHHHHhhC--CCcEEEEEcChHHHH
Confidence 88999999999999999999999998876 499999999999999999999999998764 456899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCC--
Q 010111 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-- 192 (518)
Q Consensus 115 ~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~-- 192 (518)
.|+.+.++.+. ..++++..+.|+.+...+ ..+..+++|+|+||+++...+.....
T Consensus 95 ~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~r----------------------~~i~~~~~IivtTPd~L~~~~L~~~~~~ 151 (742)
T TIGR03817 95 ADQLRAVRELT-LRGVRPATYDGDTPTEER----------------------RWAREHARYVLTNPDMLHRGILPSHARW 151 (742)
T ss_pred HHHHHHHHHhc-cCCeEEEEEeCCCCHHHH----------------------HHHhcCCCEEEEChHHHHHhhccchhHH
Confidence 99999999987 447888888888875443 13445689999999999754432111
Q ss_pred -CCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEE
Q 010111 193 -FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (518)
Q Consensus 193 -~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (518)
..++++++||+||||.+.+ .|+..+..++..+...... .....|+++
T Consensus 152 ~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~-------------------------------~g~~~q~i~ 199 (742)
T TIGR03817 152 ARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCAR-------------------------------YGASPVFVL 199 (742)
T ss_pred HHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHHh-------------------------------cCCCCEEEE
Confidence 2378899999999999876 4777777776655421100 001238999
Q ss_pred EeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCC-----------------CCcHHHHHHHHHhcCCCc
Q 010111 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES-----------------KLKPLYLVALLQSLGEEK 334 (518)
Q Consensus 272 ~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~k~~~l~~~l~~~~~~~ 334 (518)
+|||+++... .....+..+....... .. +.....+....+. ..+...+..+++. +.+
T Consensus 200 ~SATi~n~~~-~~~~l~g~~~~~i~~~-~~--~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~ 273 (742)
T TIGR03817 200 ASATTADPAA-AASRLIGAPVVAVTED-GS--PRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE--GAR 273 (742)
T ss_pred EecCCCCHHH-HHHHHcCCCeEEECCC-CC--CcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHHC--CCC
Confidence 9999987654 4444555554432211 11 1111111111111 1223344444443 579
Q ss_pred EEEEcCChhhHHHHHHHHhhcC-----CCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEE
Q 010111 335 CIVFTSSVESTHRLCTLLNHFG-----ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 409 (518)
Q Consensus 335 ~lVf~~s~~~~~~l~~~L~~~~-----~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~ 409 (518)
+||||+|++.++.++..|.... ..+.++..+||++++++|..++++|++|++++||||+++++|||+|++++||+
T Consensus 274 ~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~ 353 (742)
T TIGR03817 274 TLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVI 353 (742)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEE
Confidence 9999999999999999987531 12467889999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchhhhhhhcccCCCCCcEEEEee--cchhHHHHHHHHHHHh
Q 010111 410 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLH--KDEVCLVKRFKKLLQK 456 (518)
Q Consensus 410 ~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~--~~e~~~~~~~~~~l~~ 456 (518)
++.|.+...|+||+||+||.|+.|.+++++. +.|..++...+++++.
T Consensus 354 ~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~ 402 (742)
T TIGR03817 354 AGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDR 402 (742)
T ss_pred eCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcC
Confidence 9999999999999999999999999999986 4565555655555543
No 33
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-52 Score=381.38 Aligned_cols=396 Identities=29% Similarity=0.400 Sum_probs=344.1
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccC
Q 010111 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (518)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~ 100 (518)
...|..+ ||+..+.+++.+-||..|||+|++.+|.++ ++++++..|-||||||.+|++|+++.|......
T Consensus 20 ~g~fqsm------gL~~~v~raI~kkg~~~ptpiqRKTipliL----e~~dvv~martgsgktaaf~ipm~e~Lk~~s~~ 89 (529)
T KOG0337|consen 20 SGGFQSM------GLDYKVLRAIHKKGFNTPTPIQRKTIPLIL----EGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQT 89 (529)
T ss_pred CCCcccc------CCCHHHHHHHHHhhcCCCCchhccccccee----eccccceeeecCCcchhhHHHHHHHHHhhcccc
Confidence 4456655 599999999999999999999999866555 699999999999999999999999999887666
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
+.+++++.||++|+.|..+.++.+++..+++..+++|+.+..++.. .+..++|||++||
T Consensus 90 g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~---------------------~l~~npDii~ATp 148 (529)
T KOG0337|consen 90 GLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFI---------------------LLNENPDIIIATP 148 (529)
T ss_pred ccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHH---------------------HhccCCCEEEecC
Confidence 7899999999999999999999999999999999999999888765 3556789999999
Q ss_pred hHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCC
Q 010111 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (518)
+++..+.-. ..+.++.+.||||||||++..++|.+++..++..++...
T Consensus 149 gr~~h~~ve-m~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~------------------------------- 196 (529)
T KOG0337|consen 149 GRLLHLGVE-MTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESR------------------------------- 196 (529)
T ss_pred ceeeeeehh-eeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcc-------------------------------
Confidence 999877766 347889999999999999999999999999999876432
Q ss_pred CCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhc-CCCcEEEEc
Q 010111 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFT 339 (518)
Q Consensus 261 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~lVf~ 339 (518)
|+++||||++.......+..+.+|..+....+ ..+.+.++.....+....|...|+.++... .+++++|||
T Consensus 197 -------QTllfSatlp~~lv~fakaGl~~p~lVRldve-tkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~ 268 (529)
T KOG0337|consen 197 -------QTLLFSATLPRDLVDFAKAGLVPPVLVRLDVE-TKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFV 268 (529)
T ss_pred -------eEEEEeccCchhhHHHHHccCCCCceEEeehh-hhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEe
Confidence 89999999999999999999999999986543 366677788888888999999999988765 356899999
Q ss_pred CChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccch
Q 010111 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419 (518)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~ 419 (518)
.+..+++.+...|...+ +.+..+.|++++.-|..-+..|+.++..+||.||+++||+|+|..+.|||||+|.+...|
T Consensus 269 ~tk~hve~~~~ll~~~g---~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klF 345 (529)
T KOG0337|consen 269 ATKHHVEYVRGLLRDFG---GEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLF 345 (529)
T ss_pred cccchHHHHHHHHHhcC---CCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceE
Confidence 99999999999999877 889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHHhhcCC--------C---CCccCCCchhhhhhHHHHHHHHHHHHH
Q 010111 420 IHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQKADND--------S---CPIHSIPSSLIESLRPVYKSALDKLKE 488 (518)
Q Consensus 420 ~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~~~~~--------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (518)
+||+||+.|+|+.|.+|.++.+.|..++-.+..++...-.. . .-....|+.+.+...+.++++++.-.+
T Consensus 346 vhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~~~~~e~d~~~t~vigr~P~~~v~~~~~~~q~~~~~~~e 425 (529)
T KOG0337|consen 346 VHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFAISHFEYDCDDTTVIGRSPQSLVSLESEGHQSILESNRE 425 (529)
T ss_pred EEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeeccchhhhccccceeeccCcHHHHHHHHHHHHHHHhhhHH
Confidence 99999999999999999999999998888777665432111 1 123456777777777777777666555
Q ss_pred HH
Q 010111 489 TV 490 (518)
Q Consensus 489 ~~ 490 (518)
..
T Consensus 426 l~ 427 (529)
T KOG0337|consen 426 LQ 427 (529)
T ss_pred HH
Confidence 43
No 34
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-52 Score=399.42 Aligned_cols=377 Identities=28% Similarity=0.390 Sum_probs=315.2
Q ss_pred CcccCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhc
Q 010111 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (518)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~ 97 (518)
|.++.+|++++-+. ..++.+++++...+|..|+|+|.+|+|..+ .+++++.|||||+|||++|.+|++++|...
T Consensus 128 ~~~l~~f~~lt~~~--~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl----~~r~~lAcapTGsgKtlaf~~Pil~~L~~~ 201 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDY--SMNKRLLENLQELGFDEPTPIQKQAIPVFL----EKRDVLACAPTGSGKTLAFNLPILQHLKDL 201 (593)
T ss_pred CCccccccccchhh--hhcHHHHHhHhhCCCCCCCcccchhhhhhh----cccceEEeccCCCcchhhhhhHHHHHHHHh
Confidence 66777777765333 488999999999999999999999988766 489999999999999999999999999876
Q ss_pred c----cCCccEEEEcCcHHHHHHHHHHHHHhc--cccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcC
Q 010111 98 A----VRCLRALVVLPTRDLALQVKDVFAAIA--PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (518)
Q Consensus 98 ~----~~~~~~lil~Pt~~La~Q~~~~~~~~~--~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (518)
. ..+.+++|+.|+++|+.|++.++.++. +..+..+.............. .....
T Consensus 202 ~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a--------------------~~~~~ 261 (593)
T KOG0344|consen 202 SQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPA--------------------FLSDE 261 (593)
T ss_pred hcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccc--------------------hhHHH
Confidence 5 457899999999999999999999998 444444444333322111100 01123
Q ss_pred CCcEEEeCChHHHHhHhcCC-CCCCCcccEEEEechhHhhhH-hHHhHHHHHHHhcccccccccCCcccccccccccchh
Q 010111 172 AVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLRE-AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 249 (518)
Q Consensus 172 ~~~Iiv~Tp~~l~~~l~~~~-~~~~~~~~~vViDEah~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (518)
.++|+|+||-++..++.... ..++..+.++|+||||++.+. .|..++..|++.+.+
T Consensus 262 k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s---------------------- 319 (593)
T KOG0344|consen 262 KYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQS---------------------- 319 (593)
T ss_pred HHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcC----------------------
Confidence 46999999999999988732 257899999999999999999 999999999988754
Q ss_pred hhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHh
Q 010111 250 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329 (518)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~ 329 (518)
+.+..-+||||.+..+.++.......+..+.++.........-+.......+..|...+..++..
T Consensus 320 ---------------~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~ 384 (593)
T KOG0344|consen 320 ---------------PDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVAS 384 (593)
T ss_pred ---------------cchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhc
Confidence 22345678999999999999999988888888776544333334445566778899999999998
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEE
Q 010111 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 409 (518)
Q Consensus 330 ~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~ 409 (518)
.-..++|||+.+.+.|..+...|.. ..++.+.++||..++.+|++.+++|+.|+++|||||++++||+|+.+++.|||
T Consensus 385 g~~PP~lIfVQs~eRak~L~~~L~~--~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn 462 (593)
T KOG0344|consen 385 GFKPPVLIFVQSKERAKQLFEELEI--YDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN 462 (593)
T ss_pred cCCCCeEEEEecHHHHHHHHHHhhh--ccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe
Confidence 8889999999999999999999963 34589999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHHhhcC
Q 010111 410 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQKADN 459 (518)
Q Consensus 410 ~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~~~~ 459 (518)
||.|.+...|+||+||+||+|+.|.+++|++..|...++.+...++....
T Consensus 463 yD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~ 512 (593)
T KOG0344|consen 463 YDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGC 512 (593)
T ss_pred cCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCC
Confidence 99999999999999999999999999999999999998888888776443
No 35
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-52 Score=379.49 Aligned_cols=358 Identities=27% Similarity=0.437 Sum_probs=317.7
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhccc
Q 010111 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (518)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~ 99 (518)
-..+|++++ |.+.+++.+...||++|+.+|++|+..++ .|.|+.+.+++|+|||.+|.+++++.+.-. .
T Consensus 24 vvdsfddm~------L~e~LLrgiy~yGFekPSaIQqraI~p~i----~G~dv~~qaqsgTgKt~af~i~iLq~iD~~-~ 92 (397)
T KOG0327|consen 24 VVDSFDDMN------LKESLLRGIYAYGFEKPSAIQQRAILPCI----KGHDVIAQAQSGTGKTAAFLISILQQIDMS-V 92 (397)
T ss_pred HhhhhhhcC------CCHHHHhHHHhhccCCchHHHhccccccc----cCCceeEeeeccccchhhhHHHHHhhcCcc-h
Confidence 344677776 99999999999999999999999964444 599999999999999999999999886332 2
Q ss_pred CCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeC
Q 010111 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (518)
Q Consensus 100 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~T 179 (518)
....+++++|||+||.|+.+....++...+.++..+.|+.+...+...+ ....++|+++|
T Consensus 93 ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i--------------------~~~~~hivvGT 152 (397)
T KOG0327|consen 93 KETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQAL--------------------LKDKPHIVVGT 152 (397)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhh--------------------hccCceeecCC
Confidence 4557999999999999999999999999999999999998876544322 23457999999
Q ss_pred ChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCC
Q 010111 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (518)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (518)
|+++.+.+... .+....+.+.|+||||.|+..+|.+.+..|+..++.
T Consensus 153 pgrV~dml~~~-~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~-------------------------------- 199 (397)
T KOG0327|consen 153 PGRVFDMLNRG-SLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPS-------------------------------- 199 (397)
T ss_pred chhHHHhhccc-cccccceeEEeecchHhhhccchHHHHHHHHHHcCc--------------------------------
Confidence 99999999884 677888999999999999999999999999998873
Q ss_pred CCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEc
Q 010111 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 339 (518)
Q Consensus 260 ~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~ 339 (518)
..|.+++|||.+.++....+.+..+|..+........ ...+.++++......|...|..+.. .-...+|||
T Consensus 200 ------~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~lt-l~gikq~~i~v~k~~k~~~l~dl~~--~~~q~~if~ 270 (397)
T KOG0327|consen 200 ------DVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELT-LEGIKQFYINVEKEEKLDTLCDLYR--RVTQAVIFC 270 (397)
T ss_pred ------chhheeecccCcHHHHHHHHHhccCceEEEecchhhh-hhheeeeeeeccccccccHHHHHHH--hhhcceEEe
Confidence 3388999999999999999999999999988876643 5667888888888889999999888 567999999
Q ss_pred CChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccch
Q 010111 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419 (518)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~ 419 (518)
|++..+..+...|...+ ..+..+||+|.+.+|..+++.|+.|..+|||+|+.+++|+|+..++.||+|++|....+|
T Consensus 271 nt~r~v~~l~~~L~~~~---~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~y 347 (397)
T KOG0327|consen 271 NTRRKVDNLTDKLRAHG---FTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENY 347 (397)
T ss_pred cchhhHHHHHHHHhhCC---ceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhh
Confidence 99999999999997665 899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccCCCCCcEEEEeecchhHHHHHHHHH
Q 010111 420 IHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKL 453 (518)
Q Consensus 420 ~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~ 453 (518)
+||+||+||.|++|.++.|+.+.|...+++++++
T Consensus 348 ihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~ 381 (397)
T KOG0327|consen 348 IHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKF 381 (397)
T ss_pred hhhcccccccCCCceeeeeehHhhHHHHHhHHHh
Confidence 9999999999999999999999999666666644
No 36
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=3.8e-51 Score=391.48 Aligned_cols=340 Identities=26% Similarity=0.438 Sum_probs=301.2
Q ss_pred CCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHH
Q 010111 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (518)
Q Consensus 35 l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La 114 (518)
|...++..|+..+|..|+++|..|||.++. +-|+||+|..|+|||++|.+.+++.+... ...+..+|++|||++|
T Consensus 32 l~r~vl~glrrn~f~~ptkiQaaAIP~~~~----kmDliVQaKSGTGKTlVfsv~av~sl~~~-~~~~q~~Iv~PTREia 106 (980)
T KOG4284|consen 32 LWREVLLGLRRNAFALPTKIQAAAIPAIFS----KMDLIVQAKSGTGKTLVFSVLAVESLDSR-SSHIQKVIVTPTREIA 106 (980)
T ss_pred HHHHHHHHHHhhcccCCCchhhhhhhhhhc----ccceEEEecCCCCceEEEEeeeehhcCcc-cCcceeEEEecchhhh
Confidence 678899999999999999999999887764 88999999999999999999999887654 3567899999999999
Q ss_pred HHHHHHHHHhcccc-CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCC
Q 010111 115 LQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (518)
Q Consensus 115 ~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~ 193 (518)
.|+.+.+..+++.+ |.++.++.||++......++ ..++|+|+|||++..++.. +.+
T Consensus 107 VQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl----------------------k~~rIvIGtPGRi~qL~el-~~~ 163 (980)
T KOG4284|consen 107 VQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL----------------------KQTRIVIGTPGRIAQLVEL-GAM 163 (980)
T ss_pred hHHHHHHHHhcccccCcceEEEecCchhhhhhhhh----------------------hhceEEecCchHHHHHHHh-cCC
Confidence 99999999999865 89999999999987775543 3478999999999999988 789
Q ss_pred CCCcccEEEEechhHhhh-HhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEE
Q 010111 194 TLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (518)
Q Consensus 194 ~~~~~~~vViDEah~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (518)
++++++++|+||||.+++ ..|...+..|+..++... |.+.+
T Consensus 164 n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~r--------------------------------------Qv~a~ 205 (980)
T KOG4284|consen 164 NMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIR--------------------------------------QVAAF 205 (980)
T ss_pred CccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhh--------------------------------------eeeEE
Confidence 999999999999999998 688899999998887433 88999
Q ss_pred eEeecCChhhhhhccCCCCeEEeeCCccccCccccceeee-ecCCC-------CcHHHHHHHHHhcCCCcEEEEcCChhh
Q 010111 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL-ICESK-------LKPLYLVALLQSLGEEKCIVFTSSVES 344 (518)
Q Consensus 273 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~k~~~l~~~l~~~~~~~~lVf~~s~~~ 344 (518)
|||.+.+.+.....++.+|.++........+. .+.+|+. .+... .|+..|-.+++..+-.++||||+....
T Consensus 206 SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~-GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sr 284 (980)
T KOG4284|consen 206 SATYPRNLDNLLSKFMRDPALVRFNADDVQLF-GIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISR 284 (980)
T ss_pred eccCchhHHHHHHHHhcccceeecccCCceee-chhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhh
Confidence 99999999999999999999998877664443 4455544 34332 366777788888888899999999999
Q ss_pred HHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhh
Q 010111 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAG 424 (518)
Q Consensus 345 ~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~G 424 (518)
|+-++..|...| +.+.++.|.|++.+|..+++.++.-.++|||+||..+||||-+.+++|||.|.|-+..+|.||+|
T Consensus 285 a~~~a~~L~ssG---~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIG 361 (980)
T KOG4284|consen 285 AEPIATHLKSSG---LDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIG 361 (980)
T ss_pred hhHHHHHhhccC---CCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhh
Confidence 999999999876 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCcEEEEeecchh
Q 010111 425 RTARAGQLGRCFTLLHKDEV 444 (518)
Q Consensus 425 R~gR~g~~g~~~~~~~~~e~ 444 (518)
|+||.|..|.+++|+..++.
T Consensus 362 RAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 362 RAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred hcccccccceeEEEeccchh
Confidence 99999999999999975544
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.9e-49 Score=398.86 Aligned_cols=333 Identities=22% Similarity=0.343 Sum_probs=249.0
Q ss_pred HhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHH
Q 010111 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (518)
Q Consensus 44 ~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 123 (518)
+.+||..|+|+|.+|++.++. |+|+++.+|||+|||++|++|++.. +..+||++|+++|+.|+.+.+..
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~l~~-------~~~~lVi~P~~~L~~dq~~~l~~ 73 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPALCS-------DGITLVISPLISLMEDQVLQLKA 73 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHHHHc-------CCcEEEEecHHHHHHHHHHHHHH
Confidence 347999999999999988874 8999999999999999999998842 23699999999999999888876
Q ss_pred hccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCC-CCCcccEEE
Q 010111 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF-TLEHLCYLV 202 (518)
Q Consensus 124 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~-~~~~~~~vV 202 (518)
+ ++.+..+.++........-+. ......++|+++||+++.........+ ...++++||
T Consensus 74 ~----gi~~~~l~~~~~~~~~~~i~~-----------------~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iV 132 (470)
T TIGR00614 74 S----GIPATFLNSSQSKEQQKNVLT-----------------DLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIA 132 (470)
T ss_pred c----CCcEEEEeCCCCHHHHHHHHH-----------------HHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEE
Confidence 4 677888877776553322110 112345799999999975422110112 456799999
Q ss_pred EechhHhhhHh--HHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCCh
Q 010111 203 VDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 280 (518)
Q Consensus 203 iDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~ 280 (518)
|||||++.+++ |......+...... .+..+.+++|||++...
T Consensus 133 iDEaH~i~~~g~~fr~~~~~l~~l~~~------------------------------------~~~~~~l~lTAT~~~~~ 176 (470)
T TIGR00614 133 VDEAHCISQWGHDFRPDYKALGSLKQK------------------------------------FPNVPIMALTATASPSV 176 (470)
T ss_pred EeCCcccCccccccHHHHHHHHHHHHH------------------------------------cCCCceEEEecCCCHHH
Confidence 99999998765 34443333222110 12337899999998765
Q ss_pred hhhhh--ccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHH-hcCCCcEEEEcCChhhHHHHHHHHhhcCC
Q 010111 281 NKLAQ--LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGE 357 (518)
Q Consensus 281 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-~~~~~~~lVf~~s~~~~~~l~~~L~~~~~ 357 (518)
..... ..+..|.......... .+ .+.+..........+..++. ...+..+||||+|++.++.+++.|+..+
T Consensus 177 ~~di~~~l~l~~~~~~~~s~~r~----nl-~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g- 250 (470)
T TIGR00614 177 REDILRQLNLKNPQIFCTSFDRP----NL-YYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLG- 250 (470)
T ss_pred HHHHHHHcCCCCCcEEeCCCCCC----Cc-EEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcC-
Confidence 43322 2344555544332221 11 12222222234455666665 4455677999999999999999999766
Q ss_pred CceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEE
Q 010111 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 437 (518)
Q Consensus 358 ~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~ 437 (518)
+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||++++|.|...|+||+||+||.|..|.|++
T Consensus 251 --~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~ 328 (470)
T TIGR00614 251 --IAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHL 328 (470)
T ss_pred --CCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecchhHHHHHHHHHHH
Q 010111 438 LLHKDEVCLVKRFKKLLQ 455 (518)
Q Consensus 438 ~~~~~e~~~~~~~~~~l~ 455 (518)
|+++.|. ..+..++.
T Consensus 329 ~~~~~d~---~~~~~~~~ 343 (470)
T TIGR00614 329 FYAPADI---NRLRRLLM 343 (470)
T ss_pred EechhHH---HHHHHHHh
Confidence 9999998 44445544
No 38
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.9e-48 Score=404.14 Aligned_cols=396 Identities=19% Similarity=0.254 Sum_probs=272.8
Q ss_pred CCHHHHHHHHh-CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHH
Q 010111 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (518)
Q Consensus 35 l~~~~~~~l~~-~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~L 113 (518)
....+...++. +||..++|+|.++|+.++ .|+|+++.+|||+|||++|++|++.. ...+|||+|+++|
T Consensus 444 w~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL----~GrDVLVimPTGSGKSLcYQLPAL~~-------~GiTLVISPLiSL 512 (1195)
T PLN03137 444 WTKKLEVNNKKVFGNHSFRPNQREIINATM----SGYDVFVLMPTGGGKSLTYQLPALIC-------PGITLVISPLVSL 512 (1195)
T ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHH----cCCCEEEEcCCCccHHHHHHHHHHHc-------CCcEEEEeCHHHH
Confidence 45566666665 799999999999998877 49999999999999999999999852 2379999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHH--h-HhcC
Q 010111 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--H-INAT 190 (518)
Q Consensus 114 a~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~--~-l~~~ 190 (518)
+.++...+.. .++++..+.++....++...+... ......++|+|+||++|.. . +...
T Consensus 513 mqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l---------------~s~~g~~~ILyvTPERL~~~d~ll~~L 573 (1195)
T PLN03137 513 IQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQEL---------------SSEYSKYKLLYVTPEKVAKSDSLLRHL 573 (1195)
T ss_pred HHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHH---------------HhcCCCCCEEEEChHHhhcchHHHHHH
Confidence 9866555554 378899999988876654332110 0011458999999999852 1 2111
Q ss_pred CCC-CCCcccEEEEechhHhhhHh--HHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCce
Q 010111 191 RGF-TLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (518)
Q Consensus 191 ~~~-~~~~~~~vViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (518)
..+ ....+.+|||||||++.+++ |......+-.+... .+..
T Consensus 574 ~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~------------------------------------fp~v 617 (1195)
T PLN03137 574 ENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQK------------------------------------FPNI 617 (1195)
T ss_pred HhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHh------------------------------------CCCC
Confidence 111 23458899999999999876 44444332111110 1233
Q ss_pred eeEEEeEeecCChhhhhhc--cCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhc-CCCcEEEEcCChhh
Q 010111 268 VKMVLSATLTQDPNKLAQL--DLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVES 344 (518)
Q Consensus 268 ~~i~~SaT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~lVf~~s~~~ 344 (518)
+.+++|||++..+...... .+..+..+..... .+. + .+.+..........+..++... .+..+||||.+++.
T Consensus 618 PilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~---RpN-L-~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke 692 (1195)
T PLN03137 618 PVLALTATATASVKEDVVQALGLVNCVVFRQSFN---RPN-L-WYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMD 692 (1195)
T ss_pred CeEEEEecCCHHHHHHHHHHcCCCCcEEeecccC---ccc-e-EEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhH
Confidence 6789999998776653332 2334444333221 111 1 1222222222234455555533 35689999999999
Q ss_pred HHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhh
Q 010111 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAG 424 (518)
Q Consensus 345 ~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~G 424 (518)
|+.+++.|...+ +.+..|||+|++.+|..+++.|..|+++|||||+++++|||+|+|++||+|++|.|...|+||+|
T Consensus 693 ~E~LAe~L~~~G---ika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriG 769 (1195)
T PLN03137 693 CEKVAERLQEFG---HKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECG 769 (1195)
T ss_pred HHHHHHHHHHCC---CCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhc
Confidence 999999999776 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCcEEEEeecchhHHHHHHHHHHHhhcCCCCCccCCCchh--hhhhHHHHHHHHHHHHHHHHhHhc-cccccc
Q 010111 425 RTARAGQLGRCFTLLHKDEVCLVKRFKKLLQKADNDSCPIHSIPSSL--IESLRPVYKSALDKLKETVESEAH-RKHTIG 501 (518)
Q Consensus 425 R~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 501 (518)
||||.|..|.|++|++..|. ..+..++....... ....... ........+...+++..++.=-.. ...+..
T Consensus 770 RAGRDG~~g~cILlys~~D~---~~~~~lI~~~~~~~---s~~~~~~~r~~~s~~~~e~~~~~L~~m~~yce~~~~CRR~ 843 (1195)
T PLN03137 770 RAGRDGQRSSCVLYYSYSDY---IRVKHMISQGGVEQ---SPMAMGYNRMASSGRILETNTENLLRMVSYCENEVDCRRF 843 (1195)
T ss_pred ccCCCCCCceEEEEecHHHH---HHHHHHHhcccccc---chhhhhhcccchhHHHHHHHHHHHHHHHHHHhChHhhHHH
Confidence 99999999999999998888 44445543311100 0000000 000001112223344443333333 367788
Q ss_pred cccccccCc
Q 010111 502 FKLSRMGKG 510 (518)
Q Consensus 502 ~~~~~~~~~ 510 (518)
+.+.|+|+.
T Consensus 844 ~lL~yFGE~ 852 (1195)
T PLN03137 844 LQLVHFGEK 852 (1195)
T ss_pred HHHHHcccc
Confidence 889999886
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=8.4e-48 Score=398.87 Aligned_cols=380 Identities=22% Similarity=0.308 Sum_probs=274.9
Q ss_pred CCHHHHHHHHh-CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHH
Q 010111 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (518)
Q Consensus 35 l~~~~~~~l~~-~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~L 113 (518)
+++...+.|++ +||..|+|+|.++++.++. |+|+++.+|||+|||++|++|++.. ...+||++|+++|
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~----g~dvlv~apTGsGKTl~y~lpal~~-------~g~tlVisPl~sL 77 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLS----GRDCLVVMPTGGGKSLCYQIPALVL-------DGLTLVVSPLISL 77 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHc-------CCCEEEEecHHHH
Confidence 55556666665 7999999999999988774 8999999999999999999999842 2369999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCC
Q 010111 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (518)
Q Consensus 114 a~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~ 193 (518)
+.|+.+.++.+ ++.+..+.++.+.......+. .......+++++||+++...... ..+
T Consensus 78 ~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~-----------------~~~~g~~~il~~tPe~l~~~~~~-~~l 135 (607)
T PRK11057 78 MKDQVDQLLAN----GVAAACLNSTQTREQQLEVMA-----------------GCRTGQIKLLYIAPERLMMDNFL-EHL 135 (607)
T ss_pred HHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHH-----------------HHhCCCCcEEEEChHHhcChHHH-HHH
Confidence 99999988875 677777777766554322111 11224578999999998632111 113
Q ss_pred CCCcccEEEEechhHhhhHh--HHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEE
Q 010111 194 TLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (518)
Q Consensus 194 ~~~~~~~vViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (518)
...++++||+||||++.+++ |...+..+-..... .+..+.++
T Consensus 136 ~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~------------------------------------~p~~~~v~ 179 (607)
T PRK11057 136 AHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQR------------------------------------FPTLPFMA 179 (607)
T ss_pred hhCCCCEEEEeCccccccccCcccHHHHHHHHHHHh------------------------------------CCCCcEEE
Confidence 34568999999999998765 33333332221110 12347899
Q ss_pred EeEeecCChhhhhh--ccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHH
Q 010111 272 LSATLTQDPNKLAQ--LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 349 (518)
Q Consensus 272 ~SaT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~ 349 (518)
+|||++........ ..+.+|......... + .+ .+.......+...+...+....+.++||||+|++.|+.++
T Consensus 180 lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r---~-nl--~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la 253 (607)
T PRK11057 180 LTATADDTTRQDIVRLLGLNDPLIQISSFDR---P-NI--RYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTA 253 (607)
T ss_pred EecCCChhHHHHHHHHhCCCCeEEEECCCCC---C-cc--eeeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHH
Confidence 99999876543222 234455544332211 1 11 1222233345566777777777889999999999999999
Q ss_pred HHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccC
Q 010111 350 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429 (518)
Q Consensus 350 ~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 429 (518)
+.|+..+ +.+..+||+|++.+|..+++.|+.|+++|||||+++++|||+|++++||+||+|.|...|+||+||+||.
T Consensus 254 ~~L~~~g---~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~ 330 (607)
T PRK11057 254 ARLQSRG---ISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRD 330 (607)
T ss_pred HHHHhCC---CCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCC
Confidence 9999766 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeecchhHHHHHHHHHHHhhcCCCCCccCCCchhhhhhHHHHHHHHHHHHHHHHhHhccccccccccccccC
Q 010111 430 GQLGRCFTLLHKDEVCLVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTIGFKLSRMGK 509 (518)
Q Consensus 430 g~~g~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (518)
|.+|.|++|+++.|... +.+++.... .. . ........++.+....+ ....+..+.++|+|+
T Consensus 331 G~~~~~ill~~~~d~~~---~~~~~~~~~---------~~-~---~~~~~~~~l~~~~~~~~---~~~Crr~~~l~yf~e 391 (607)
T PRK11057 331 GLPAEAMLFYDPADMAW---LRRCLEEKP---------AG-Q---QQDIERHKLNAMGAFAE---AQTCRRLVLLNYFGE 391 (607)
T ss_pred CCCceEEEEeCHHHHHH---HHHHHhcCC---------cH-H---HHHHHHHHHHHHHHHHh---cccCHHHHHHHHhCC
Confidence 99999999999999843 444443211 00 0 01111122333444433 356888899999998
Q ss_pred cc
Q 010111 510 GR 511 (518)
Q Consensus 510 ~~ 511 (518)
..
T Consensus 392 ~~ 393 (607)
T PRK11057 392 GR 393 (607)
T ss_pred CC
Confidence 74
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=4.8e-46 Score=398.73 Aligned_cols=343 Identities=20% Similarity=0.254 Sum_probs=248.7
Q ss_pred CCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcc-----cCCccEEEEcC
Q 010111 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVLP 109 (518)
Q Consensus 35 l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~-----~~~~~~lil~P 109 (518)
+++.+.+.+.+ +|..|+|+|.+||+.++ .|+|++++||||||||++|.+|+++.+.... .++.++||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il----~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsP 92 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIH----EGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSP 92 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHH----cCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcC
Confidence 78999999888 79999999999999876 4999999999999999999999999886531 23568999999
Q ss_pred cHHHHHHHHHHHHH-------hc----ccc-CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEE
Q 010111 110 TRDLALQVKDVFAA-------IA----PAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (518)
Q Consensus 110 t~~La~Q~~~~~~~-------~~----~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv 177 (518)
+++|+.|+++.+.. ++ ... ++++.+.+|+.+...+.. .+...++|+|
T Consensus 93 traLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~---------------------~l~~~p~IlV 151 (876)
T PRK13767 93 LRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQK---------------------MLKKPPHILI 151 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHH---------------------HHhCCCCEEE
Confidence 99999999876553 22 222 678899999988665533 2345689999
Q ss_pred eCChHHHHhHhcCCC-CCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccc
Q 010111 178 ATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE 256 (518)
Q Consensus 178 ~Tp~~l~~~l~~~~~-~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (518)
|||++|..++.+... ..+.++++||+||||.+.+..++..+...+..+....
T Consensus 152 tTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~--------------------------- 204 (876)
T PRK13767 152 TTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELA--------------------------- 204 (876)
T ss_pred ecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhc---------------------------
Confidence 999999877765321 1478899999999999998777777766665543211
Q ss_pred cCCCCCCCCceeeEEEeEeecCChhhhhhccC-------CCCeEEeeCCccccCccccceee-----eecCCCCcHHHHH
Q 010111 257 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL-------HHPLFLTTGETRYKLPERLESYK-----LICESKLKPLYLV 324 (518)
Q Consensus 257 ~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~k~~~l~ 324 (518)
.+..|.+++|||+++ ......... ..+..+.... ......+.... ...........+.
T Consensus 205 -------~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~--~~k~~~i~v~~p~~~l~~~~~~~~~~~l~ 274 (876)
T PRK13767 205 -------GGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDAR--FVKPFDIKVISPVDDLIHTPAEEISEALY 274 (876)
T ss_pred -------CCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccC--CCccceEEEeccCccccccccchhHHHHH
Confidence 022378999999865 222222111 1121111110 00000000000 0011111122222
Q ss_pred HHHHh--cCCCcEEEEcCChhhHHHHHHHHhhcCC---CceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCC
Q 010111 325 ALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 399 (518)
Q Consensus 325 ~~l~~--~~~~~~lVf~~s~~~~~~l~~~L~~~~~---~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 399 (518)
..+.. ...+++||||+|+..|+.++..|..... .+..+..+||++++++|..+++.|++|.++|||||+++++||
T Consensus 275 ~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GI 354 (876)
T PRK13767 275 ETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGI 354 (876)
T ss_pred HHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcC
Confidence 32222 1357899999999999999999986321 236799999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCCccchhhhhhhcccCC-CCCcEEEEee
Q 010111 400 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAG-QLGRCFTLLH 440 (518)
Q Consensus 400 Dip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~~~~ 440 (518)
|+|++++||+++.|.+...|+||+||+||.+ ..+.+++++.
T Consensus 355 Dip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 355 DIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred CCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 9999999999999999999999999999864 4445555544
No 41
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=7.9e-47 Score=401.59 Aligned_cols=336 Identities=24% Similarity=0.314 Sum_probs=252.6
Q ss_pred CCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHH
Q 010111 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (518)
Q Consensus 35 l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La 114 (518)
|++.+.+++++.||.+|+|+|.+|++..+ ..|+|++++||||||||++|.+|+++.+.. +.++||++|+++|+
T Consensus 8 lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~---~~g~nvlv~APTGSGKTlia~lail~~l~~----~~kal~i~P~raLa 80 (737)
T PRK02362 8 LPEGVIEFYEAEGIEELYPPQAEAVEAGL---LDGKNLLAAIPTASGKTLIAELAMLKAIAR----GGKALYIVPLRALA 80 (737)
T ss_pred CCHHHHHHHHhCCCCcCCHHHHHHHHHHH---hCCCcEEEECCCcchHHHHHHHHHHHHHhc----CCcEEEEeChHHHH
Confidence 99999999999999999999999987633 258999999999999999999999998864 34899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCC
Q 010111 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (518)
Q Consensus 115 ~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 194 (518)
.|+++.++++.. .++++..++|+...... ....++|+|+||+++..++.+ ....
T Consensus 81 ~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~------------------------~l~~~~IiV~Tpek~~~llr~-~~~~ 134 (737)
T PRK02362 81 SEKFEEFERFEE-LGVRVGISTGDYDSRDE------------------------WLGDNDIIVATSEKVDSLLRN-GAPW 134 (737)
T ss_pred HHHHHHHHHhhc-CCCEEEEEeCCcCcccc------------------------ccCCCCEEEECHHHHHHHHhc-Chhh
Confidence 999999998754 48899999998653221 123579999999999888876 3456
Q ss_pred CCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeE
Q 010111 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (518)
Q Consensus 195 ~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (518)
++++++||+||+|.+.+.+++..++.++..+.... +..|.+++||
T Consensus 135 l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~-----------------------------------~~~qii~lSA 179 (737)
T PRK02362 135 LDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLN-----------------------------------PDLQVVALSA 179 (737)
T ss_pred hhhcCEEEEECccccCCCcchHHHHHHHHHHHhcC-----------------------------------CCCcEEEEcc
Confidence 78999999999999998889988888887654211 2248899999
Q ss_pred eecCChhhhhhccCC-------CCeEEeeC---CccccCccccceeeeecCC-CCcHHHHHHHHHhcCCCcEEEEcCChh
Q 010111 275 TLTQDPNKLAQLDLH-------HPLFLTTG---ETRYKLPERLESYKLICES-KLKPLYLVALLQSLGEEKCIVFTSSVE 343 (518)
Q Consensus 275 T~~~~~~~~~~~~~~-------~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~lVf~~s~~ 343 (518)
|+++. ..+..+... .|+..... ........ ......... ......+...+. .++++||||+|+.
T Consensus 180 Tl~n~-~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~ 254 (737)
T PRK02362 180 TIGNA-DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD--SQREVEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRR 254 (737)
T ss_pred cCCCH-HHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc--ccccCCCccchHHHHHHHHHHH--cCCCeEEEEeCHH
Confidence 99643 333322111 11111000 00000000 000000000 111222222222 4679999999999
Q ss_pred hHHHHHHHHhhcCC---------------------------------CceeEEEccccCChHHHHHHHHHHhcCCceEEE
Q 010111 344 STHRLCTLLNHFGE---------------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390 (518)
Q Consensus 344 ~~~~l~~~L~~~~~---------------------------------~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLv 390 (518)
.|+.+++.|..... ....++.+||+|++.+|..+++.|++|.++|||
T Consensus 255 ~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLv 334 (737)
T PRK02362 255 NAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVIS 334 (737)
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 99999888864311 013689999999999999999999999999999
Q ss_pred EcCccccCCCCCCCCEEEE----cC-----CCCCccchhhhhhhcccCCCC--CcEEEEeecch
Q 010111 391 SSDAMTRGMDVEGVNNVVN----YD-----KPAYIKTYIHRAGRTARAGQL--GRCFTLLHKDE 443 (518)
Q Consensus 391 aT~~~~~GiDip~v~~VI~----~~-----~p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~e 443 (518)
||+++++|+|+|.+++||. || .|.+..+|.||+|||||.|.+ |.+++++...+
T Consensus 335 aT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 335 STPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred echhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCch
Confidence 9999999999999999997 65 578889999999999999865 88998887643
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=4.2e-46 Score=387.81 Aligned_cols=329 Identities=21% Similarity=0.313 Sum_probs=252.3
Q ss_pred HHHh-CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHH
Q 010111 42 ALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (518)
Q Consensus 42 ~l~~-~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~ 120 (518)
.|++ +||.+++|+|.++++.++. |+|+++++|||+|||++|++|++.. ...++|++|+++|+.|+.+.
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lpal~~-------~g~~lVisPl~sL~~dq~~~ 72 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVPALLL-------KGLTVVISPLISLMKDQVDQ 72 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHHHHHc-------CCcEEEEcCCHHHHHHHHHH
Confidence 4544 8999999999999988874 8999999999999999999998842 23689999999999999988
Q ss_pred HHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccE
Q 010111 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCY 200 (518)
Q Consensus 121 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~ 200 (518)
++.+ ++.+..+.++.+.......+ ........+|+++||+++...... ..+...++++
T Consensus 73 l~~~----gi~~~~~~s~~~~~~~~~~~-----------------~~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l~~ 130 (591)
T TIGR01389 73 LRAA----GVAAAYLNSTLSAKEQQDIE-----------------KALVNGELKLLYVAPERLEQDYFL-NMLQRIPIAL 130 (591)
T ss_pred HHHc----CCcEEEEeCCCCHHHHHHHH-----------------HHHhCCCCCEEEEChhHhcChHHH-HHHhcCCCCE
Confidence 8875 67888888887765543211 112235679999999998643222 1234567999
Q ss_pred EEEechhHhhhHh--HHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecC
Q 010111 201 LVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 278 (518)
Q Consensus 201 vViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~ 278 (518)
||+||||++.+++ |......+...... .+..+.+++|||.+.
T Consensus 131 iViDEaH~i~~~g~~frp~y~~l~~l~~~------------------------------------~~~~~vi~lTAT~~~ 174 (591)
T TIGR01389 131 VAVDEAHCVSQWGHDFRPEYQRLGSLAER------------------------------------FPQVPRIALTATADA 174 (591)
T ss_pred EEEeCCcccccccCccHHHHHHHHHHHHh------------------------------------CCCCCEEEEEeCCCH
Confidence 9999999997754 44444333332211 122257899999987
Q ss_pred ChhhhhhccC--CCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcC
Q 010111 279 DPNKLAQLDL--HHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 356 (518)
Q Consensus 279 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~ 356 (518)
.........+ ..+..+..... .+ ...+.......+...+..++....+.++||||+|++.++.+++.|...+
T Consensus 175 ~~~~~i~~~l~~~~~~~~~~~~~---r~---nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g 248 (591)
T TIGR01389 175 ETRQDIRELLRLADANEFITSFD---RP---NLRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQG 248 (591)
T ss_pred HHHHHHHHHcCCCCCCeEecCCC---CC---CcEEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCC
Confidence 7654333332 33433322211 11 1122223344566777788877767899999999999999999998765
Q ss_pred CCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEE
Q 010111 357 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 436 (518)
Q Consensus 357 ~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~ 436 (518)
+.+..+||+|+..+|..+++.|.+|+++|||||+++++|||+|++++||+|++|.|...|+|++||+||.|..|.|+
T Consensus 249 ---~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 249 ---ISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred ---CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecchhHHHH
Q 010111 437 TLLHKDEVCLVK 448 (518)
Q Consensus 437 ~~~~~~e~~~~~ 448 (518)
+++++.|...++
T Consensus 326 l~~~~~d~~~~~ 337 (591)
T TIGR01389 326 LLYSPADIALLK 337 (591)
T ss_pred EecCHHHHHHHH
Confidence 999999984433
No 43
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.5e-44 Score=367.75 Aligned_cols=340 Identities=21% Similarity=0.335 Sum_probs=268.2
Q ss_pred CCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcc----cCCccEEEEcC
Q 010111 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA----VRCLRALVVLP 109 (518)
Q Consensus 34 ~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~----~~~~~~lil~P 109 (518)
-|+|.+.++++.. |.+|||.|.+||+.+. +|+|+|+.||||||||+++.+|+++.+.+.. ..+..+||++|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~----~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsP 81 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIH----SGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISP 81 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHh----CCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCc
Confidence 4899999999997 9999999999999887 4999999999999999999999999998872 34688999999
Q ss_pred cHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhc
Q 010111 110 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 189 (518)
Q Consensus 110 t~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~ 189 (518)
.|+|.+.+.+.+..++...|+++.+.+|+++...+.+. ..++|||+|+||+.|.-++..
T Consensus 82 LkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~---------------------~~~PPdILiTTPEsL~lll~~ 140 (814)
T COG1201 82 LKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKM---------------------LKNPPHILITTPESLAILLNS 140 (814)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhc---------------------cCCCCcEEEeChhHHHHHhcC
Confidence 99999999999999999999999999999987776443 446789999999999877766
Q ss_pred CCC-CCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCcee
Q 010111 190 TRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (518)
Q Consensus 190 ~~~-~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (518)
.+. -.+.++++||+||+|.+.+...+.++..-+..+.... +..|
T Consensus 141 ~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~-----------------------------------~~~q 185 (814)
T COG1201 141 PKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELA-----------------------------------GDFQ 185 (814)
T ss_pred HHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhC-----------------------------------cccE
Confidence 322 2488999999999999998888877766666554321 1348
Q ss_pred eEEEeEeecCChhhhhhccCCC--CeEEeeCCccccCccccceeeeecC-------CCCcHHHHHHHHHhcCCCcEEEEc
Q 010111 269 KMVLSATLTQDPNKLAQLDLHH--PLFLTTGETRYKLPERLESYKLICE-------SKLKPLYLVALLQSLGEEKCIVFT 339 (518)
Q Consensus 269 ~i~~SaT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~k~~~l~~~l~~~~~~~~lVf~ 339 (518)
.|.+|||.. +.....+..... +..+......... .+.......+ .......+..+++++ ..+|||+
T Consensus 186 RIGLSATV~-~~~~varfL~g~~~~~~Iv~~~~~k~~--~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~--~ttLIF~ 260 (814)
T COG1201 186 RIGLSATVG-PPEEVAKFLVGFGDPCEIVDVSAAKKL--EIKVISPVEDLIYDEELWAALYERIAELVKKH--RTTLIFT 260 (814)
T ss_pred EEeehhccC-CHHHHHHHhcCCCCceEEEEcccCCcc--eEEEEecCCccccccchhHHHHHHHHHHHhhc--CcEEEEE
Confidence 999999997 444444433332 3333222111111 1110000000 111223344444443 4899999
Q ss_pred CChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccch
Q 010111 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419 (518)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~ 419 (518)
||+..++.++..|...+. ..+..|||+++.+.|..++++|++|+.+++|||+.++-|||+.+++.||++..|.++..+
T Consensus 261 NTR~~aE~l~~~L~~~~~--~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~ 338 (814)
T COG1201 261 NTRSGAERLAFRLKKLGP--DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRF 338 (814)
T ss_pred eChHHHHHHHHHHHHhcC--CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHH
Confidence 999999999999998653 789999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccc-CCCCCcEEEEeec
Q 010111 420 IHRAGRTAR-AGQLGRCFTLLHK 441 (518)
Q Consensus 420 ~Qr~GR~gR-~g~~g~~~~~~~~ 441 (518)
+||+||+|+ .|....++++...
T Consensus 339 lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 339 LQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred hHhccccccccCCcccEEEEecC
Confidence 999999996 4555677766655
No 44
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.3e-44 Score=381.79 Aligned_cols=332 Identities=21% Similarity=0.276 Sum_probs=249.0
Q ss_pred CCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHH
Q 010111 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (518)
Q Consensus 35 l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La 114 (518)
+++.+.+.++++||.+|+|+|.+|++..+ ..|+|++++||||||||++|.+|+++.+... +.++||++|+++|+
T Consensus 8 l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~---~~g~nvlv~apTGsGKT~~~~l~il~~l~~~---~~~~l~l~P~~aLa 81 (720)
T PRK00254 8 VDERIKRVLKERGIEELYPPQAEALKSGV---LEGKNLVLAIPTASGKTLVAEIVMVNKLLRE---GGKAVYLVPLKALA 81 (720)
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHH---hCCCcEEEECCCCcHHHHHHHHHHHHHHHhc---CCeEEEEeChHHHH
Confidence 89999999999999999999999987633 2589999999999999999999999887653 45899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCC
Q 010111 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (518)
Q Consensus 115 ~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 194 (518)
.|+++.+..+. ..++++..++|+.+.... ....++|+|+||+++..++.. ....
T Consensus 82 ~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~------------------------~~~~~~IiV~Tpe~~~~ll~~-~~~~ 135 (720)
T PRK00254 82 EEKYREFKDWE-KLGLRVAMTTGDYDSTDE------------------------WLGKYDIIIATAEKFDSLLRH-GSSW 135 (720)
T ss_pred HHHHHHHHHHh-hcCCEEEEEeCCCCCchh------------------------hhccCCEEEEcHHHHHHHHhC-Cchh
Confidence 99999998864 458999999998754321 124579999999999888775 4456
Q ss_pred CCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeE
Q 010111 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (518)
Q Consensus 195 ~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (518)
++++++||+||+|.+.+.+++..++.++..+.. ..|.+++||
T Consensus 136 l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~--------------------------------------~~qiI~lSA 177 (720)
T PRK00254 136 IKDVKLVVADEIHLIGSYDRGATLEMILTHMLG--------------------------------------RAQILGLSA 177 (720)
T ss_pred hhcCCEEEEcCcCccCCccchHHHHHHHHhcCc--------------------------------------CCcEEEEEc
Confidence 889999999999999988888888888876531 137899999
Q ss_pred eecCChhhhhhccCCCCeEEeeCCccccCcc--c-cceeeeecCCC--Cc-----HHHHHHHHHhcCCCcEEEEcCChhh
Q 010111 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPE--R-LESYKLICESK--LK-----PLYLVALLQSLGEEKCIVFTSSVES 344 (518)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~--~k-----~~~l~~~l~~~~~~~~lVf~~s~~~ 344 (518)
|+++ ...+..+. ....+.. . ..+.+. . ..+........ .+ ...+...++ .++++||||+|+..
T Consensus 178 Tl~n-~~~la~wl-~~~~~~~-~--~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~ 250 (720)
T PRK00254 178 TVGN-AEELAEWL-NAELVVS-D--WRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRS 250 (720)
T ss_pred cCCC-HHHHHHHh-CCccccC-C--CCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHH
Confidence 9975 34444322 2111110 0 001110 0 00111111111 11 122333333 36799999999999
Q ss_pred HHHHHHHHhhcC------------------------------CCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc
Q 010111 345 THRLCTLLNHFG------------------------------ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (518)
Q Consensus 345 ~~~l~~~L~~~~------------------------------~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 394 (518)
|+.++..|.... .....++.+||+|++.+|..+++.|++|.++|||||++
T Consensus 251 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~t 330 (720)
T PRK00254 251 AEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPT 330 (720)
T ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcH
Confidence 988876664210 01236899999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEE-------cCCCC-CccchhhhhhhcccCC--CCCcEEEEeecch
Q 010111 395 MTRGMDVEGVNNVVN-------YDKPA-YIKTYIHRAGRTARAG--QLGRCFTLLHKDE 443 (518)
Q Consensus 395 ~~~GiDip~v~~VI~-------~~~p~-s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~e 443 (518)
+++|+|+|.+++||. ++.|. +..+|.||+||+||.| ..|.+++++...+
T Consensus 331 La~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 331 LSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 999999999999984 44443 4568999999999975 5689999987655
No 45
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=3.5e-43 Score=372.21 Aligned_cols=327 Identities=18% Similarity=0.209 Sum_probs=244.9
Q ss_pred CHHHHH-HHHhCCCCccchhhHHHHHHhhCCCCCC--CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHH
Q 010111 36 DPRLKV-ALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (518)
Q Consensus 36 ~~~~~~-~l~~~g~~~~~~~Q~~a~~~~~~~~~~~--~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~ 112 (518)
+..+.+ ....++| +||+.|.+|++.+...+..+ .|.+++||||+|||.+|++|++..+.++ .+++|++||++
T Consensus 437 ~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g----~qvlvLvPT~~ 511 (926)
T TIGR00580 437 DLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG----KQVAVLVPTTL 511 (926)
T ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC----CeEEEEeCcHH
Confidence 344444 4455799 69999999999998765443 6999999999999999999999887653 48999999999
Q ss_pred HHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhc-CCCcEEEeCChHHHHhHhcCC
Q 010111 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATR 191 (518)
Q Consensus 113 La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~ 191 (518)
||.|+++.+++++...++++..++|+.+..+....+ ..+. ..++|+|+||..+ . +
T Consensus 512 LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~------------------~~l~~g~~dIVIGTp~ll----~--~ 567 (926)
T TIGR00580 512 LAQQHFETFKERFANFPVTIELLSRFRSAKEQNEIL------------------KELASGKIDILIGTHKLL----Q--K 567 (926)
T ss_pred HHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHH------------------HHHHcCCceEEEchHHHh----h--C
Confidence 999999999998888889999998887655442221 1222 3589999999432 2 3
Q ss_pred CCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEE
Q 010111 192 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (518)
Q Consensus 192 ~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (518)
.+.+.++++||+||+|++... ....+..+. ...+.++
T Consensus 568 ~v~f~~L~llVIDEahrfgv~-----~~~~L~~~~--------------------------------------~~~~vL~ 604 (926)
T TIGR00580 568 DVKFKDLGLLIIDEEQRFGVK-----QKEKLKELR--------------------------------------TSVDVLT 604 (926)
T ss_pred CCCcccCCEEEeecccccchh-----HHHHHHhcC--------------------------------------CCCCEEE
Confidence 467889999999999986322 112222211 2237899
Q ss_pred EeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHH-HHHHh-cCCCcEEEEcCChhhHHHHH
Q 010111 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV-ALLQS-LGEEKCIVFTSSVESTHRLC 349 (518)
Q Consensus 272 ~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~-~~l~~-~~~~~~lVf~~s~~~~~~l~ 349 (518)
+|||+.+...........++..+...... ...+..+....+ . ..+. .+++. ..+++++|||++++.++.++
T Consensus 605 ~SATpiprtl~~~l~g~~d~s~I~~~p~~---R~~V~t~v~~~~--~--~~i~~~i~~el~~g~qv~if~n~i~~~e~l~ 677 (926)
T TIGR00580 605 LSATPIPRTLHMSMSGIRDLSIIATPPED---RLPVRTFVMEYD--P--ELVREAIRRELLRGGQVFYVHNRIESIEKLA 677 (926)
T ss_pred EecCCCHHHHHHHHhcCCCcEEEecCCCC---ccceEEEEEecC--H--HHHHHHHHHHHHcCCeEEEEECCcHHHHHHH
Confidence 99997665544444455555555443221 011222222111 1 1111 12221 24679999999999999999
Q ss_pred HHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCC-Cccchhhhhhhccc
Q 010111 350 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHRAGRTAR 428 (518)
Q Consensus 350 ~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~-s~~~~~Qr~GR~gR 428 (518)
+.|+... .++++..+||+|++.+|..++++|++|+++|||||+++++|||+|++++||+++.|. +...|.||+||+||
T Consensus 678 ~~L~~~~-p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR 756 (926)
T TIGR00580 678 TQLRELV-PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGR 756 (926)
T ss_pred HHHHHhC-CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCC
Confidence 9998752 347899999999999999999999999999999999999999999999999999876 46689999999999
Q ss_pred CCCCCcEEEEeecc
Q 010111 429 AGQLGRCFTLLHKD 442 (518)
Q Consensus 429 ~g~~g~~~~~~~~~ 442 (518)
.|+.|.|++++.+.
T Consensus 757 ~g~~g~aill~~~~ 770 (926)
T TIGR00580 757 SKKKAYAYLLYPHQ 770 (926)
T ss_pred CCCCeEEEEEECCc
Confidence 99999999998654
No 46
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=4.5e-43 Score=360.66 Aligned_cols=330 Identities=20% Similarity=0.204 Sum_probs=236.3
Q ss_pred HHHHHHh-CCCCccchhhHHHHHHhhCCCCCCC-CEEEECCCCchHHHHhHHHHHHHhhhcccCCcc-EEEEcCcHHHHH
Q 010111 39 LKVALQN-MGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-ALVVLPTRDLAL 115 (518)
Q Consensus 39 ~~~~l~~-~g~~~~~~~Q~~a~~~~~~~~~~~~-~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~-~lil~Pt~~La~ 115 (518)
+...+++ .||. |||||.++++.++ .|+ ++++.+|||||||.++.++++.. ... ...++ +++++|||+|+.
T Consensus 4 f~~ff~~~~G~~-PtpiQ~~~i~~il----~G~~~v~~~apTGSGKTaa~aafll~~-~~~-~~~~~rLv~~vPtReLa~ 76 (844)
T TIGR02621 4 FDEWYQGLHGYS-PFPWQLSLAERFV----AGQPPESCSTPTGLGKTSIIAAWLLAV-EIG-AKVPRRLVYVVNRRTVVD 76 (844)
T ss_pred HHHHHHHHhCCC-CCHHHHHHHHHHH----cCCCcceEecCCCCcccHHHHHhhccc-ccc-ccccceEEEeCchHHHHH
Confidence 3444454 5896 9999999998876 476 67888999999999776555532 221 22334 455779999999
Q ss_pred HHHHHHHHhcccc-----------------------CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCC
Q 010111 116 QVKDVFAAIAPAV-----------------------GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172 (518)
Q Consensus 116 Q~~~~~~~~~~~~-----------------------~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (518)
|+++.+.++++.+ ++++..++||.+...+.. .+..+
T Consensus 77 Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~---------------------~l~~~ 135 (844)
T TIGR02621 77 QVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWM---------------------LDPHR 135 (844)
T ss_pred HHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHH---------------------hcCCC
Confidence 9999999988754 488899999998777654 45678
Q ss_pred CcEEEeCChHHHHhHhc-CC-------CC---CCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccc
Q 010111 173 VDILVATPGRLMDHINA-TR-------GF---TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 241 (518)
Q Consensus 173 ~~Iiv~Tp~~l~~~l~~-~~-------~~---~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 241 (518)
++|+|+|++.+.+-... .. .+ .+.++.++|+|||| ++++|.+.+..|+..+.....
T Consensus 136 p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~----------- 202 (844)
T TIGR02621 136 PAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPD----------- 202 (844)
T ss_pred CcEEEECHHHHcCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcc-----------
Confidence 89999996544322110 00 00 25789999999999 788999999999886421100
Q ss_pred cccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHH
Q 010111 242 SAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPL 321 (518)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 321 (518)
..+.|+++||||++.+........+.++..+....... ....+.++ +..+...|..
T Consensus 203 ----------------------~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l-~a~ki~q~-v~v~~e~Kl~ 258 (844)
T TIGR02621 203 ----------------------FLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRL-AAKKIVKL-VPPSDEKFLS 258 (844)
T ss_pred ----------------------cccceEEEEecCCCccHHHHHHHHccCCceeecccccc-cccceEEE-EecChHHHHH
Confidence 01238999999998877766665555555444433221 22233333 2333333443
Q ss_pred HHHHHH---HhcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHH-----HHHHHHhc----CC----
Q 010111 322 YLVALL---QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRS-----KTLKAFRE----GK---- 385 (518)
Q Consensus 322 ~l~~~l---~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~-----~~~~~f~~----g~---- 385 (518)
.+...+ ....++++||||||++.|+.+++.|...+ + ..+||+|++.+|. .++++|++ |.
T Consensus 259 ~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g---~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~ 333 (844)
T TIGR02621 259 TMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEK---F--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARP 333 (844)
T ss_pred HHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcC---C--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccc
Confidence 333222 12346789999999999999999998754 3 8999999999999 78999987 54
Q ss_pred ---ceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCC-cEEEEeec
Q 010111 386 ---IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG-RCFTLLHK 441 (518)
Q Consensus 386 ---~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g-~~~~~~~~ 441 (518)
..|||||+++++||||+. ++||++..| .+.|+||+||+||.|+.| ..++++..
T Consensus 334 ~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 334 QQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred cccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 689999999999999986 888887776 689999999999999854 34566543
No 47
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.8e-42 Score=362.79 Aligned_cols=325 Identities=18% Similarity=0.216 Sum_probs=238.5
Q ss_pred HHHHHHHHhCCCCccchhhHHHHHHhhCCCCCC--CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHH
Q 010111 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (518)
Q Consensus 37 ~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~--~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La 114 (518)
..+......++| +||++|.+|++.+......+ .+.+++||||||||++|++|++..+.+ +.+++|++||++||
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~----g~q~lilaPT~~LA 323 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA----GYQAALMAPTEILA 323 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEeccHHHH
Confidence 445556677899 79999999999988755433 589999999999999999999988754 45899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhc-CCCcEEEeCChHHHHhHhcCCCC
Q 010111 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGF 193 (518)
Q Consensus 115 ~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~ 193 (518)
.|+++.+++++...++++.+++|+.+...+...+ ..+. ..++|+|+||+.+.+ ..
T Consensus 324 ~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~------------------~~l~~g~~~IvVgT~~ll~~------~v 379 (681)
T PRK10917 324 EQHYENLKKLLEPLGIRVALLTGSLKGKERREIL------------------EAIASGEADIVIGTHALIQD------DV 379 (681)
T ss_pred HHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHH------------------HHHhCCCCCEEEchHHHhcc------cc
Confidence 9999999999998899999999999866553322 1222 358999999987733 34
Q ss_pred CCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEe
Q 010111 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (518)
Q Consensus 194 ~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (518)
.+.++++||+||+|++....+.. +... . ...+.++||
T Consensus 380 ~~~~l~lvVIDE~Hrfg~~qr~~----l~~~-~--------------------------------------~~~~iL~~S 416 (681)
T PRK10917 380 EFHNLGLVIIDEQHRFGVEQRLA----LREK-G--------------------------------------ENPHVLVMT 416 (681)
T ss_pred hhcccceEEEechhhhhHHHHHH----HHhc-C--------------------------------------CCCCEEEEe
Confidence 57789999999999874332211 1110 0 112679999
Q ss_pred EeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHh--cCCCcEEEEcCCh--------h
Q 010111 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSV--------E 343 (518)
Q Consensus 274 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~--------~ 343 (518)
||+.+...............+...... ...+.... .. ..+...+...+.. ..+.+++|||+.+ .
T Consensus 417 ATp~prtl~~~~~g~~~~s~i~~~p~~---r~~i~~~~--~~-~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~ 490 (681)
T PRK10917 417 ATPIPRTLAMTAYGDLDVSVIDELPPG---RKPITTVV--IP-DSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQ 490 (681)
T ss_pred CCCCHHHHHHHHcCCCceEEEecCCCC---CCCcEEEE--eC-cccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHH
Confidence 997544333322222222222111100 11122222 12 2223333333332 2467999999964 3
Q ss_pred hHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCC-ccchhhh
Q 010111 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY-IKTYIHR 422 (518)
Q Consensus 344 ~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s-~~~~~Qr 422 (518)
.++.+++.|.... .++.+..+||+|++.+|..++++|++|+.+|||||+++++|+|+|++++||+++.|.. ...|.||
T Consensus 491 ~~~~~~~~L~~~~-~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~ 569 (681)
T PRK10917 491 SAEETYEELQEAF-PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQL 569 (681)
T ss_pred HHHHHHHHHHHHC-CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHH
Confidence 4566777777642 2378999999999999999999999999999999999999999999999999999974 6788899
Q ss_pred hhhcccCCCCCcEEEEee
Q 010111 423 AGRTARAGQLGRCFTLLH 440 (518)
Q Consensus 423 ~GR~gR~g~~g~~~~~~~ 440 (518)
+||+||.|..|.|++++.
T Consensus 570 ~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 570 RGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred hhcccCCCCceEEEEEEC
Confidence 999999999999999995
No 48
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.7e-42 Score=360.75 Aligned_cols=328 Identities=17% Similarity=0.205 Sum_probs=238.7
Q ss_pred HHHHHHHHhCCCCccchhhHHHHHHhhCCCCCC--CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHH
Q 010111 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (518)
Q Consensus 37 ~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~--~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La 114 (518)
..+.+.+..++| +||+.|.+|++.++...... .+.+++||||||||++|++|++..+.+ +.+++|++||++||
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~----g~qvlilaPT~~LA 297 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA----GYQVALMAPTEILA 297 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc----CCcEEEECCHHHHH
Confidence 456677888999 89999999999998754332 478999999999999999999988764 45899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCC
Q 010111 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (518)
Q Consensus 115 ~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 194 (518)
.|+++.+++++...++++.+++|+.+...+...+. ......++|+|+||+.+.+ ...
T Consensus 298 ~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~-----------------~i~~g~~~IiVgT~~ll~~------~~~ 354 (630)
T TIGR00643 298 EQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLE-----------------TIASGQIHLVVGTHALIQE------KVE 354 (630)
T ss_pred HHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHH-----------------HHhCCCCCEEEecHHHHhc------ccc
Confidence 99999999999888999999999988665432221 1123458999999988743 345
Q ss_pred CCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeE
Q 010111 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (518)
Q Consensus 195 ~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (518)
+.++++||+||+|++....+.. +....... ...+.+++||
T Consensus 355 ~~~l~lvVIDEaH~fg~~qr~~----l~~~~~~~------------------------------------~~~~~l~~SA 394 (630)
T TIGR00643 355 FKRLALVIIDEQHRFGVEQRKK----LREKGQGG------------------------------------FTPHVLVMSA 394 (630)
T ss_pred ccccceEEEechhhccHHHHHH----HHHhcccC------------------------------------CCCCEEEEeC
Confidence 7789999999999874332221 11111000 1126799999
Q ss_pred eecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHh--cCCCcEEEEcCCh--------hh
Q 010111 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSV--------ES 344 (518)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~--------~~ 344 (518)
|+.+...............+..... ....+.... .....+ ..++..+.. ..+.+++|||+.+ ..
T Consensus 395 Tp~prtl~l~~~~~l~~~~i~~~p~---~r~~i~~~~--~~~~~~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~ 468 (630)
T TIGR00643 395 TPIPRTLALTVYGDLDTSIIDELPP---GRKPITTVL--IKHDEK-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKA 468 (630)
T ss_pred CCCcHHHHHHhcCCcceeeeccCCC---CCCceEEEE--eCcchH-HHHHHHHHHHHHhCCcEEEEEccccccccchHHH
Confidence 9765433222211111111111000 001122221 222222 334444432 2467899999876 45
Q ss_pred HHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCC-Cccchhhhh
Q 010111 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHRA 423 (518)
Q Consensus 345 ~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~-s~~~~~Qr~ 423 (518)
++.+++.|.... .++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||+++.|. +...|.||+
T Consensus 469 a~~~~~~L~~~~-~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~ 547 (630)
T TIGR00643 469 AEALYERLKKAF-PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLR 547 (630)
T ss_pred HHHHHHHHHhhC-CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHh
Confidence 667777776542 457899999999999999999999999999999999999999999999999999987 567889999
Q ss_pred hhcccCCCCCcEEEEe
Q 010111 424 GRTARAGQLGRCFTLL 439 (518)
Q Consensus 424 GR~gR~g~~g~~~~~~ 439 (518)
||+||.|+.|.|++++
T Consensus 548 GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 548 GRVGRGDHQSYCLLVY 563 (630)
T ss_pred hhcccCCCCcEEEEEE
Confidence 9999999999999999
No 49
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=5.5e-43 Score=369.94 Aligned_cols=341 Identities=21% Similarity=0.262 Sum_probs=246.8
Q ss_pred CCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHH
Q 010111 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (518)
Q Consensus 35 l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La 114 (518)
|++.+.+.+.+.+|. |+++|.+|++.+. .++|++++||||||||+++.+++++.+..+ .+++|++|+++|+
T Consensus 8 l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~----~~~nvlv~apTGSGKTl~a~lail~~l~~~----~k~v~i~P~raLa 78 (674)
T PRK01172 8 YDDEFLNLFTGNDFE-LYDHQRMAIEQLR----KGENVIVSVPTAAGKTLIAYSAIYETFLAG----LKSIYIVPLRSLA 78 (674)
T ss_pred CCHHHHHHHhhCCCC-CCHHHHHHHHHHh----cCCcEEEECCCCchHHHHHHHHHHHHHHhC----CcEEEEechHHHH
Confidence 899999999999995 9999999988764 589999999999999999999999887653 4799999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCC
Q 010111 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (518)
Q Consensus 115 ~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 194 (518)
.|+++.+.++. ..+.++...+|+...... ....++|+|+||+++..++.+. ...
T Consensus 79 ~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~------------------------~~~~~dIiv~Tpek~~~l~~~~-~~~ 132 (674)
T PRK01172 79 MEKYEELSRLR-SLGMRVKISIGDYDDPPD------------------------FIKRYDVVILTSEKADSLIHHD-PYI 132 (674)
T ss_pred HHHHHHHHHHh-hcCCeEEEEeCCCCCChh------------------------hhccCCEEEECHHHHHHHHhCC-hhH
Confidence 99999998864 357888888887653221 1235799999999998887763 345
Q ss_pred CCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeE
Q 010111 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (518)
Q Consensus 195 ~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (518)
+.++++||+||||++.+.+++..++.++..+.... +..+.+++||
T Consensus 133 l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~-----------------------------------~~~riI~lSA 177 (674)
T PRK01172 133 INDVGLIVADEIHIIGDEDRGPTLETVLSSARYVN-----------------------------------PDARILALSA 177 (674)
T ss_pred HhhcCEEEEecchhccCCCccHHHHHHHHHHHhcC-----------------------------------cCCcEEEEeC
Confidence 78899999999999988888888888776543211 2247899999
Q ss_pred eecCChhhhhhccCCCCeEEeeCCccccCcccccee---eeecCCCC-cHHHHHHHHHh--cCCCcEEEEcCChhhHHHH
Q 010111 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY---KLICESKL-KPLYLVALLQS--LGEEKCIVFTSSVESTHRL 348 (518)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-k~~~l~~~l~~--~~~~~~lVf~~s~~~~~~l 348 (518)
|+++ ...+..+. ....+ ... ....+...... ....+... ....+..++.. ..++++||||++++.|+.+
T Consensus 178 Tl~n-~~~la~wl-~~~~~-~~~--~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~ 252 (674)
T PRK01172 178 TVSN-ANELAQWL-NASLI-KSN--FRPVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDY 252 (674)
T ss_pred ccCC-HHHHHHHh-CCCcc-CCC--CCCCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHHHHHH
Confidence 9964 34443322 11111 000 00111110000 00111111 11112333332 2467999999999999999
Q ss_pred HHHHhhcCC----------------------CceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCE
Q 010111 349 CTLLNHFGE----------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 406 (518)
Q Consensus 349 ~~~L~~~~~----------------------~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~ 406 (518)
++.|..... ...++..+||++++.+|..+++.|++|.++|||||+++++|+|+|+..
T Consensus 253 a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~- 331 (674)
T PRK01172 253 AEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARL- 331 (674)
T ss_pred HHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceE-
Confidence 998865311 013588999999999999999999999999999999999999999864
Q ss_pred EEEcCC---------CCCccchhhhhhhcccCCC--CCcEEEEeecch-hHHHHHHHHHH
Q 010111 407 VVNYDK---------PAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDE-VCLVKRFKKLL 454 (518)
Q Consensus 407 VI~~~~---------p~s~~~~~Qr~GR~gR~g~--~g~~~~~~~~~e-~~~~~~~~~~l 454 (518)
||+.+. |.+..+|.||+|||||.|. .|.+++++...+ . +.+++++
T Consensus 332 VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~---~~~~~~l 388 (674)
T PRK01172 332 VIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASY---DAAKKYL 388 (674)
T ss_pred EEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccH---HHHHHHH
Confidence 555443 4567789999999999985 566787775443 3 3344554
No 50
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-44 Score=307.05 Aligned_cols=307 Identities=26% Similarity=0.413 Sum_probs=267.1
Q ss_pred CCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHH
Q 010111 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (518)
Q Consensus 35 l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La 114 (518)
|.|++++++-+.||..|+++|.+|||..+ -|.|++++|..|.|||.+|.+.-++++..-. ....++++|.||+||
T Consensus 49 lkpellraivdcgfehpsevqhecipqai----lgmdvlcqaksgmgktavfvl~tlqqiepv~-g~vsvlvmchtrela 123 (387)
T KOG0329|consen 49 LKPELLRAIVDCGFEHPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQIEPVD-GQVSVLVMCHTRELA 123 (387)
T ss_pred cCHHHHHHHHhccCCCchHhhhhhhhHHh----hcchhheecccCCCceeeeehhhhhhcCCCC-CeEEEEEEeccHHHH
Confidence 88999999999999999999999988766 3999999999999999999999999886543 345799999999999
Q ss_pred HHHHHHHHHhcccc-CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCC
Q 010111 115 LQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (518)
Q Consensus 115 ~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~ 193 (518)
-|+.+++.++.+.+ +.++.+++||.++.+... .+..-|+|+|+|||+++.+.++ +.+
T Consensus 124 fqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee---------------------~lk~~PhivVgTPGrilALvr~-k~l 181 (387)
T KOG0329|consen 124 FQISKEYERFSKYMPSVKVSVFFGGLFIKKDEE---------------------LLKNCPHIVVGTPGRILALVRN-RSL 181 (387)
T ss_pred HHHHHHHHHHHhhCCCceEEEEEcceeccccHH---------------------HHhCCCeEEEcCcHHHHHHHHh-ccC
Confidence 99999998888776 589999999998776644 2344689999999999998888 679
Q ss_pred CCCcccEEEEechhHhhhH-hHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEE
Q 010111 194 TLEHLCYLVVDETDRLLRE-AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (518)
Q Consensus 194 ~~~~~~~vViDEah~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (518)
++++++..|+||||.|+.+ .....++.|...++.. .|.+.+
T Consensus 182 ~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~--------------------------------------KQvmmf 223 (387)
T KOG0329|consen 182 NLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHE--------------------------------------KQVMMF 223 (387)
T ss_pred chhhcceeehhhHHHHHHHHHHHHHHHHHhhcCccc--------------------------------------ceeeee
Confidence 9999999999999999876 6677788888776532 288999
Q ss_pred eEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHH
Q 010111 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (518)
Q Consensus 273 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L 352 (518)
|||++.++......++.+|..+.+..+.......+.++++...+.+|...+..++....-++++||+.|+....
T Consensus 224 satlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~Rl~------ 297 (387)
T KOG0329|consen 224 SATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQRLS------ 297 (387)
T ss_pred eeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhhhh------
Confidence 99999999999999999999888887766666778889999999999999999999888889999998866500
Q ss_pred hhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCC
Q 010111 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432 (518)
Q Consensus 353 ~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~ 432 (518)
| ..+ +|||++++||+|+..++.|+|||.|.+.++|.||+||+||.|..
T Consensus 298 ----------------------------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtk 345 (387)
T KOG0329|consen 298 ----------------------------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK 345 (387)
T ss_pred ----------------------------h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccc
Confidence 2 123 89999999999999999999999999999999999999999999
Q ss_pred CcEEEEeecchh
Q 010111 433 GRCFTLLHKDEV 444 (518)
Q Consensus 433 g~~~~~~~~~e~ 444 (518)
|.+++|++..+-
T Consensus 346 glaitfvs~e~d 357 (387)
T KOG0329|consen 346 GLAITFVSDEND 357 (387)
T ss_pred cceeehhcchhh
Confidence 999999975443
No 51
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.7e-42 Score=340.63 Aligned_cols=379 Identities=20% Similarity=0.272 Sum_probs=279.1
Q ss_pred HHHHHHHh-CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHH
Q 010111 38 RLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (518)
Q Consensus 38 ~~~~~l~~-~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q 116 (518)
.+...|++ +||..+++.|.++|..++. |+|+++..|||.||++||.+|++-. .| -+|||+|..+|...
T Consensus 4 ~~~~~L~~~fGy~~FR~gQ~evI~~~l~----g~d~lvvmPTGgGKSlCyQiPAll~------~G-~TLVVSPLiSLM~D 72 (590)
T COG0514 4 EAQQVLKQVFGYASFRPGQQEIIDALLS----GKDTLVVMPTGGGKSLCYQIPALLL------EG-LTLVVSPLISLMKD 72 (590)
T ss_pred HHHHHHHHHhCccccCCCHHHHHHHHHc----CCcEEEEccCCCCcchHhhhHHHhc------CC-CEEEECchHHHHHH
Confidence 33455665 6999999999999888775 8999999999999999999999842 22 69999999999998
Q ss_pred HHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCC
Q 010111 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLE 196 (518)
Q Consensus 117 ~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 196 (518)
+.+.++.. |+.+..+.+..+..+...-+. +......++++-+|++|..--.. ..+.-.
T Consensus 73 QV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~-----------------~l~~g~~klLyisPErl~~~~f~-~~L~~~ 130 (590)
T COG0514 73 QVDQLEAA----GIRAAYLNSTLSREERQQVLN-----------------QLKSGQLKLLYISPERLMSPRFL-ELLKRL 130 (590)
T ss_pred HHHHHHHc----CceeehhhcccCHHHHHHHHH-----------------HHhcCceeEEEECchhhcChHHH-HHHHhC
Confidence 88888876 788888888877665533221 22233479999999998543211 112234
Q ss_pred cccEEEEechhHhhhHh--HHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeE
Q 010111 197 HLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (518)
Q Consensus 197 ~~~~vViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (518)
.+.++||||||++..+| |.+....+-..... ++..+.+.+||
T Consensus 131 ~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~------------------------------------~~~~p~~AlTA 174 (590)
T COG0514 131 PISLVAIDEAHCISQWGHDFRPDYRRLGRLRAG------------------------------------LPNPPVLALTA 174 (590)
T ss_pred CCceEEechHHHHhhcCCccCHhHHHHHHHHhh------------------------------------CCCCCEEEEeC
Confidence 58899999999999886 66666555544321 12347899999
Q ss_pred eecCChhhhhhc--cCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHH
Q 010111 275 TLTQDPNKLAQL--DLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (518)
Q Consensus 275 T~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L 352 (518)
|.+..+...+.. .+..+..+..+....++...+... .+...+...+.. ......+..||||.|++.++.++++|
T Consensus 175 TA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~---~~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L 250 (590)
T COG0514 175 TATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEK---GEPSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEELAEWL 250 (590)
T ss_pred CCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhc---ccHHHHHHHHHh-hccccCCCeEEEEeeHHhHHHHHHHH
Confidence 998776654443 444555555544333221111111 112222222222 12445667999999999999999999
Q ss_pred hhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCC
Q 010111 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432 (518)
Q Consensus 353 ~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~ 432 (518)
+..+ +.+..|||+|+..+|..+.++|..++++|+|||.++++|||-|++++|||||+|.|.+.|.|-+||+||.|.+
T Consensus 251 ~~~g---~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~ 327 (590)
T COG0514 251 RKNG---ISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLP 327 (590)
T ss_pred HHCC---CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCc
Confidence 9875 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeecchhHHHHHHHHHHHhhcCCCCCccCCCchhhhhhHHHHHHHHHHHHHHHHhHhccccccccccccccCc
Q 010111 433 GRCFTLLHKDEVCLVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTIGFKLSRMGKG 510 (518)
Q Consensus 433 g~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (518)
..|++|+++.|. .....+++..+. ....-+....++...+.-......+....++|+|..
T Consensus 328 a~aill~~~~D~---~~~~~~i~~~~~---------------~~~~~~~~~~kl~~~~~~~e~~~crr~~ll~yfge~ 387 (590)
T COG0514 328 AEAILLYSPEDI---RWQRYLIEQSKP---------------DEEQKQIELAKLRQMIAYCETQTCRRLVLLKYFGED 387 (590)
T ss_pred ceEEEeeccccH---HHHHHHHHhhcc---------------hHHHHHHHHHHHHHHHHhcccccchHHHHHHhcCcc
Confidence 999999999998 444444443221 222233334455555555555557788888899876
No 52
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.4e-41 Score=369.14 Aligned_cols=297 Identities=22% Similarity=0.283 Sum_probs=217.3
Q ss_pred EECCCCchHHHHhHHHHHHHhhhcc---------cCCccEEEEcCcHHHHHHHHHHHHHhc------------cccCceE
Q 010111 74 INSPTGSGKTLSYALPIVQTLSNRA---------VRCLRALVVLPTRDLALQVKDVFAAIA------------PAVGLSV 132 (518)
Q Consensus 74 i~apTGsGKT~~~~l~~~~~l~~~~---------~~~~~~lil~Pt~~La~Q~~~~~~~~~------------~~~~~~v 132 (518)
|+||||||||++|.+|+++.+.... ..+.++|||+|+++|+.|+.+.++..+ ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999987532 235789999999999999999887522 1247899
Q ss_pred EEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhH
Q 010111 133 GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212 (518)
Q Consensus 133 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~ 212 (518)
...+|+++..++.. .+.+.++|+|+||++|..++.+.....++++++||+||+|.+.+.
T Consensus 81 ~vrtGDt~~~eR~r---------------------ll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~ 139 (1490)
T PRK09751 81 GIRTGDTPAQERSK---------------------LTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGS 139 (1490)
T ss_pred EEEECCCCHHHHHH---------------------HhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhccc
Confidence 99999998777643 234568999999999998876533346899999999999999987
Q ss_pred hHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccC-CCC
Q 010111 213 AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL-HHP 291 (518)
Q Consensus 213 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~-~~~ 291 (518)
.++.++...+..+..... ...|.|++|||+++ ...+..... ..+
T Consensus 140 kRG~~Lel~LeRL~~l~~----------------------------------~~~QrIgLSATI~n-~eevA~~L~g~~p 184 (1490)
T PRK09751 140 KRGAHLALSLERLDALLH----------------------------------TSAQRIGLSATVRS-ASDVAAFLGGDRP 184 (1490)
T ss_pred ccccHHHHHHHHHHHhCC----------------------------------CCCeEEEEEeeCCC-HHHHHHHhcCCCC
Confidence 777766666655432110 12389999999975 444444322 234
Q ss_pred eEEeeCCccccCccccceeeeecCCCC---------------------cHHHHHHHHHh-cCCCcEEEEcCChhhHHHHH
Q 010111 292 LFLTTGETRYKLPERLESYKLICESKL---------------------KPLYLVALLQS-LGEEKCIVFTSSVESTHRLC 349 (518)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------k~~~l~~~l~~-~~~~~~lVf~~s~~~~~~l~ 349 (518)
..+...... .+..+... +...... .......++.. ....++||||||+..|+.++
T Consensus 185 v~Iv~~~~~--r~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La 261 (1490)
T PRK09751 185 VTVVNPPAM--RHPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLT 261 (1490)
T ss_pred EEEECCCCC--cccceEEE-EecCchhhccccccccccccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHH
Confidence 433221111 11111111 1110000 00111122222 24578999999999999999
Q ss_pred HHHhhcCC------------------------------CceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCC
Q 010111 350 TLLNHFGE------------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 399 (518)
Q Consensus 350 ~~L~~~~~------------------------------~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 399 (518)
..|++... ....+..|||++++++|..+++.|++|++++||||+++++||
T Consensus 262 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGI 341 (1490)
T PRK09751 262 ARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGI 341 (1490)
T ss_pred HHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccC
Confidence 99976421 012367899999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCCccchhhhhhhcccC
Q 010111 400 DVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429 (518)
Q Consensus 400 Dip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 429 (518)
|++++++||+++.|.+..+|+||+||+||.
T Consensus 342 DIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 342 DMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 999999999999999999999999999996
No 53
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=2.3e-41 Score=365.93 Aligned_cols=327 Identities=17% Similarity=0.189 Sum_probs=245.1
Q ss_pred CHHHHHHHHhCCCCccchhhHHHHHHhhCCCCC--CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHH
Q 010111 36 DPRLKVALQNMGISSLFPVQVAVWQETIGPGLF--ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (518)
Q Consensus 36 ~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~--~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~L 113 (518)
+++..+....++| +||+.|.+|++.++..+.. ..|++++||||+|||.+|+.+++..+.+ +.+++|++||++|
T Consensus 587 ~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~----g~qvlvLvPT~eL 661 (1147)
T PRK10689 587 REQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN----HKQVAVLVPTTLL 661 (1147)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc----CCeEEEEeCcHHH
Confidence 4566777788999 8999999999998875433 3799999999999999999888776543 4589999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhc-CCCcEEEeCChHHHHhHhcCCC
Q 010111 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRG 192 (518)
Q Consensus 114 a~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~ 192 (518)
|.|+++.+++.+...++++.+++|+.+..++...+ ..+. ..++|+|+||+.+ . ..
T Consensus 662 A~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il------------------~~l~~g~~dIVVgTp~lL----~--~~ 717 (1147)
T PRK10689 662 AQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQIL------------------AEAAEGKIDILIGTHKLL----Q--SD 717 (1147)
T ss_pred HHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHH------------------HHHHhCCCCEEEECHHHH----h--CC
Confidence 99999999987776788888898888766554321 1222 4589999999744 2 23
Q ss_pred CCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEE
Q 010111 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (518)
Q Consensus 193 ~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (518)
+.+.+++++|+||+|++... . ...+..++ +..+.+++
T Consensus 718 v~~~~L~lLVIDEahrfG~~-~----~e~lk~l~--------------------------------------~~~qvLl~ 754 (1147)
T PRK10689 718 VKWKDLGLLIVDEEHRFGVR-H----KERIKAMR--------------------------------------ADVDILTL 754 (1147)
T ss_pred CCHhhCCEEEEechhhcchh-H----HHHHHhcC--------------------------------------CCCcEEEE
Confidence 56788999999999997221 1 12222211 22378999
Q ss_pred eEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCC-CcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHH
Q 010111 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK-LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 351 (518)
Q Consensus 273 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~ 351 (518)
|||+.+.........+.++..+....... ..+..+....... .+...+..+. .+++++|||++++.++.+++.
T Consensus 755 SATpiprtl~l~~~gl~d~~~I~~~p~~r---~~v~~~~~~~~~~~~k~~il~el~---r~gqv~vf~n~i~~ie~la~~ 828 (1147)
T PRK10689 755 TATPIPRTLNMAMSGMRDLSIIATPPARR---LAVKTFVREYDSLVVREAILREIL---RGGQVYYLYNDVENIQKAAER 828 (1147)
T ss_pred cCCCCHHHHHHHHhhCCCcEEEecCCCCC---CCceEEEEecCcHHHHHHHHHHHh---cCCeEEEEECCHHHHHHHHHH
Confidence 99987766666666677777665533221 1223332222111 1111222222 357999999999999999999
Q ss_pred HhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCC-CCccchhhhhhhcccCC
Q 010111 352 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP-AYIKTYIHRAGRTARAG 430 (518)
Q Consensus 352 L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p-~s~~~~~Qr~GR~gR~g 430 (518)
|.... .+.++..+||+|++.+|.+++++|++|+++|||||+++++|||+|++++||+.+.. .+...|+||+||+||.|
T Consensus 829 L~~~~-p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g 907 (1147)
T PRK10689 829 LAELV-PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH 907 (1147)
T ss_pred HHHhC-CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCC
Confidence 98752 24789999999999999999999999999999999999999999999999955443 23457999999999999
Q ss_pred CCCcEEEEeec
Q 010111 431 QLGRCFTLLHK 441 (518)
Q Consensus 431 ~~g~~~~~~~~ 441 (518)
+.|.|++++.+
T Consensus 908 ~~g~a~ll~~~ 918 (1147)
T PRK10689 908 HQAYAWLLTPH 918 (1147)
T ss_pred CceEEEEEeCC
Confidence 99999988854
No 54
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.4e-40 Score=311.94 Aligned_cols=324 Identities=22% Similarity=0.289 Sum_probs=235.9
Q ss_pred CCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccc
Q 010111 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (518)
Q Consensus 48 ~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~ 127 (518)
..+++.||......++ .+|+|++.|||.|||+++++.+...+.+.+ + ++|+++||+.|+.|.++.+.+....
T Consensus 13 ~ie~R~YQ~~i~a~al-----~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~--~-kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 13 TIEPRLYQLNIAAKAL-----FKNTLVVLPTGLGKTFIAAMVIANRLRWFG--G-KVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred cccHHHHHHHHHHHHh-----hcCeEEEecCCccHHHHHHHHHHHHHHhcC--C-eEEEecCCchHHHHHHHHHHHHhCC
Confidence 4578889987765554 469999999999999999999998888753 3 8999999999999999999999876
Q ss_pred cCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechh
Q 010111 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (518)
Q Consensus 128 ~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah 207 (518)
....++.++|..+..++... +...+|+|+||+.+.+.+.. +..+++++.++||||||
T Consensus 85 p~~~i~~ltGev~p~~R~~~----------------------w~~~kVfvaTPQvveNDl~~-Grid~~dv~~lifDEAH 141 (542)
T COG1111 85 PEDEIAALTGEVRPEEREEL----------------------WAKKKVFVATPQVVENDLKA-GRIDLDDVSLLIFDEAH 141 (542)
T ss_pred ChhheeeecCCCChHHHHHH----------------------HhhCCEEEeccHHHHhHHhc-CccChHHceEEEechhh
Confidence 66788899999887766443 34569999999999999988 56899999999999999
Q ss_pred HhhhHhHHhHH-HHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhc
Q 010111 208 RLLREAYQAWL-PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 286 (518)
Q Consensus 208 ~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~ 286 (518)
+....--+..+ ...+..- .....+.+|||+.++...+...
T Consensus 142 RAvGnyAYv~Va~~y~~~~---------------------------------------k~~~ilgLTASPGs~~ekI~eV 182 (542)
T COG1111 142 RAVGNYAYVFVAKEYLRSA---------------------------------------KNPLILGLTASPGSDLEKIQEV 182 (542)
T ss_pred hccCcchHHHHHHHHHHhc---------------------------------------cCceEEEEecCCCCCHHHHHHH
Confidence 87554333222 2222221 1125688899988774443331
Q ss_pred cCC---CCeEEeeCCccc---------------cCcc-----------------------------c----------c--
Q 010111 287 DLH---HPLFLTTGETRY---------------KLPE-----------------------------R----------L-- 307 (518)
Q Consensus 287 ~~~---~~~~~~~~~~~~---------------~~~~-----------------------------~----------~-- 307 (518)
.-+ .-+.+.+..+.. .+|. . .
T Consensus 183 ~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~ 262 (542)
T COG1111 183 VENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQI 262 (542)
T ss_pred HHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHH
Confidence 000 000000000000 0000 0 0
Q ss_pred --c--------------------------------------ee-----------------------------------ee
Q 010111 308 --E--------------------------------------SY-----------------------------------KL 312 (518)
Q Consensus 308 --~--------------------------------------~~-----------------------------------~~ 312 (518)
. +| ..
T Consensus 263 ~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~ 342 (542)
T COG1111 263 RLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADE 342 (542)
T ss_pred HHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhcc
Confidence 0 00 00
Q ss_pred ecCCCCcHHHHHHHHH----hcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEE-------EccccCChHHHHHHHHHH
Q 010111 313 ICESKLKPLYLVALLQ----SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIK-------EYSGLQRQSVRSKTLKAF 381 (518)
Q Consensus 313 ~~~~~~k~~~l~~~l~----~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~-------~~hg~~~~~~r~~~~~~f 381 (518)
..-...|+..+..+++ ...+.++|||++.+++|+.+.++|...+..- .+. ....||++++..++++.|
T Consensus 343 ~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~-~~rFiGQa~r~~~~GMsQkeQ~eiI~~F 421 (542)
T COG1111 343 SGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKA-RVRFIGQASREGDKGMSQKEQKEIIDQF 421 (542)
T ss_pred ccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcc-eeEEeeccccccccccCHHHHHHHHHHH
Confidence 0001233334444443 2345699999999999999999999876321 111 223589999999999999
Q ss_pred hcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecch
Q 010111 382 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (518)
Q Consensus 382 ~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e 443 (518)
+.|+++|||||+++++|+|||+++.||+|++..|+..++||.|||||. +.|.++++++.+.
T Consensus 422 r~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gt 482 (542)
T COG1111 422 RKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGT 482 (542)
T ss_pred hcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCc
Confidence 999999999999999999999999999999999999999999999998 8999999998873
No 55
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=4.6e-39 Score=348.92 Aligned_cols=335 Identities=21% Similarity=0.299 Sum_probs=237.1
Q ss_pred HHHHHHHh-CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHH
Q 010111 38 RLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (518)
Q Consensus 38 ~~~~~l~~-~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q 116 (518)
++.+.+++ +|+ +|+++|..+++.++ .|+|++++||||+|||. |.+++...+.. .+.+++|++||++|+.|
T Consensus 68 ~~~~~f~~~~G~-~pt~iQ~~~i~~il----~g~dv~i~ApTGsGKT~-f~l~~~~~l~~---~g~~alIL~PTreLa~Q 138 (1176)
T PRK09401 68 EFEKFFKKKTGS-KPWSLQRTWAKRLL----LGESFAIIAPTGVGKTT-FGLVMSLYLAK---KGKKSYIIFPTRLLVEQ 138 (1176)
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHH----CCCcEEEEcCCCCCHHH-HHHHHHHHHHh---cCCeEEEEeccHHHHHH
Confidence 33344544 577 89999999988776 49999999999999996 55555555433 35689999999999999
Q ss_pred HHHHHHHhccccCceEEEeecCCch-HHHHHHhhcCCccccCccCCchhHHHhhc-CCCcEEEeCChHHHHhHhcCCCCC
Q 010111 117 VKDVFAAIAPAVGLSVGLAVGQSSI-ADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFT 194 (518)
Q Consensus 117 ~~~~~~~~~~~~~~~v~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~ 194 (518)
+++.++.++...++.+..++|+.+. ..+..+ ....+. ..++|+|+||++|.+++.. +.
T Consensus 139 i~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~-----------------~~~~l~~~~~~IlV~Tp~rL~~~~~~---l~ 198 (1176)
T PRK09401 139 VVEKLEKFGEKVGCGVKILYYHSSLKKKEKEE-----------------FLERLKEGDFDILVTTSQFLSKNFDE---LP 198 (1176)
T ss_pred HHHHHHHHhhhcCceEEEEEccCCcchhHHHH-----------------HHHHHhcCCCCEEEECHHHHHHHHHh---cc
Confidence 9999999998888888888877643 111111 111222 4589999999999988763 45
Q ss_pred CCcccEEEEechhHhhh-----------HhHH-hHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCC
Q 010111 195 LEHLCYLVVDETDRLLR-----------EAYQ-AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262 (518)
Q Consensus 195 ~~~~~~vViDEah~~~~-----------~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (518)
...++++|+||||+|++ .||. +.+..++..++..... ...+..+..+.. .+...
T Consensus 199 ~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~---------~~~~~~i~~l~~-----~i~~~ 264 (1176)
T PRK09401 199 KKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKY---------EEIYEKIRELEE-----KIAEL 264 (1176)
T ss_pred ccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhccccccc---------chhhhHHHHHHH-----hhhhc
Confidence 56799999999999996 4564 5677777776532110 000001111110 00000
Q ss_pred CCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCCh
Q 010111 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 342 (518)
Q Consensus 263 ~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~ 342 (518)
.....|.+++|||.++..... ..+..+..+.++... ....++.+.++.++ .+...+..+++... .++||||+++
T Consensus 265 ~~~~~q~ilfSAT~~~~~~~~--~l~~~ll~~~v~~~~-~~~rnI~~~yi~~~--~k~~~L~~ll~~l~-~~~LIFv~t~ 338 (1176)
T PRK09401 265 KDKKGVLVVSSATGRPRGNRV--KLFRELLGFEVGSPV-FYLRNIVDSYIVDE--DSVEKLVELVKRLG-DGGLIFVPSD 338 (1176)
T ss_pred ccCCceEEEEeCCCCccchHH--HHhhccceEEecCcc-cccCCceEEEEEcc--cHHHHHHHHHHhcC-CCEEEEEecc
Confidence 001348899999997642211 112233334443332 22344555555544 56777788887664 6899999998
Q ss_pred hh---HHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEE----cCccccCCCCCC-CCEEEEcCCCC
Q 010111 343 ES---THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEG-VNNVVNYDKPA 414 (518)
Q Consensus 343 ~~---~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLva----T~~~~~GiDip~-v~~VI~~~~p~ 414 (518)
.. ++.+++.|+..+ +++..+||++ ...+++|++|+++|||| ||+++||||+|+ +++||||+.|.
T Consensus 339 ~~~~~ae~l~~~L~~~g---i~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 339 KGKEYAEELAEYLEDLG---INAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred cChHHHHHHHHHHHHCC---CcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 87 999999999876 8999999999 23459999999999999 699999999999 89999999998
Q ss_pred ------CccchhhhhhhcccC
Q 010111 415 ------YIKTYIHRAGRTARA 429 (518)
Q Consensus 415 ------s~~~~~Qr~GR~gR~ 429 (518)
....|.||+||+...
T Consensus 411 ~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 411 FKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred EEEeccccccCHHHHHHHHhh
Confidence 567899999999754
No 56
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.3e-39 Score=309.06 Aligned_cols=347 Identities=25% Similarity=0.288 Sum_probs=272.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCcc
Q 010111 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR 103 (518)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~ 103 (518)
.+.++++++ ++++.+.+.|+..|++++.|+|.-|+. ..++.|.|.+++++|+||||++.-++=+.++... +.+
T Consensus 191 ~~r~~vdeL-dipe~fk~~lk~~G~~eLlPVQ~laVe---~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~---g~K 263 (830)
T COG1202 191 VERVPVDEL-DIPEKFKRMLKREGIEELLPVQVLAVE---AGLLEGENLLVVSATASGKTLIGELAGIPRLLSG---GKK 263 (830)
T ss_pred ccccccccc-CCcHHHHHHHHhcCcceecchhhhhhh---hccccCCceEEEeccCCCcchHHHhhCcHHHHhC---CCe
Confidence 345566666 499999999999999999999999864 4456899999999999999999998888777763 448
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHH
Q 010111 104 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183 (518)
Q Consensus 104 ~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l 183 (518)
.||++|..+||+|-++.|++-..++++.+..-+|-.-......- ........+||||+|++-+
T Consensus 264 mlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~p-----------------v~~~t~~dADIIVGTYEGi 326 (830)
T COG1202 264 MLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEP-----------------VVVDTSPDADIIVGTYEGI 326 (830)
T ss_pred EEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCc-----------------cccCCCCCCcEEEeechhH
Confidence 99999999999999999998888889999888886543322100 0011234589999999998
Q ss_pred HHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCC
Q 010111 184 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 263 (518)
Q Consensus 184 ~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (518)
-.++..+ ..+.++..|||||+|.+-+...+..+.-++..+....
T Consensus 327 D~lLRtg--~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~---------------------------------- 370 (830)
T COG1202 327 DYLLRTG--KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLF---------------------------------- 370 (830)
T ss_pred HHHHHcC--CcccccceEEeeeeeeccchhcccchhhHHHHHHHhC----------------------------------
Confidence 7666663 6788999999999999988888888888887765322
Q ss_pred CCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccce-eeeecCCCCcHHHHHHHHHhc--------CCCc
Q 010111 264 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES-YKLICESKLKPLYLVALLQSL--------GEEK 334 (518)
Q Consensus 264 ~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~l~~~l~~~--------~~~~ 334 (518)
+..|.|.+|||.. +..+++...-.+.+.+.- .|-.++. .....+...|...+..+.+.. -.++
T Consensus 371 -~~AQ~i~LSATVg-Np~elA~~l~a~lV~y~~------RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQ 442 (830)
T COG1202 371 -PGAQFIYLSATVG-NPEELAKKLGAKLVLYDE------RPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQ 442 (830)
T ss_pred -CCCeEEEEEeecC-ChHHHHHHhCCeeEeecC------CCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCc
Confidence 3459999999995 555565544444443321 1223333 334444778887777776532 2579
Q ss_pred EEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcC---
Q 010111 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD--- 411 (518)
Q Consensus 335 ~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~--- 411 (518)
+|||++|+..|..+++.|...| +++..||++++..+|..+...|.++++.++|+|-+++.|+|+|. +.||+-.
T Consensus 443 tIVFT~SRrr~h~lA~~L~~kG---~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPA-SQVIFEsLaM 518 (830)
T COG1202 443 TIVFTYSRRRCHELADALTGKG---LKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPA-SQVIFESLAM 518 (830)
T ss_pred eEEEecchhhHHHHHHHhhcCC---cccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCch-HHHHHHHHHc
Confidence 9999999999999999999766 99999999999999999999999999999999999999999995 4455322
Q ss_pred --CCCCccchhhhhhhcccCC--CCCcEEEEeecc
Q 010111 412 --KPAYIKTYIHRAGRTARAG--QLGRCFTLLHKD 442 (518)
Q Consensus 412 --~p~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~ 442 (518)
-+-|+..|.||.||+||-+ ..|.+++++.+.
T Consensus 519 G~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 519 GIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred ccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 3458999999999999976 468999998764
No 57
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.4e-38 Score=320.65 Aligned_cols=358 Identities=20% Similarity=0.212 Sum_probs=249.6
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
+|. .|+|+|..+++.++. |+ ++.+.||+|||++|++|++.+... +..++|++||++||.|.++++..++
T Consensus 100 lg~-~p~~VQ~~~~~~ll~----G~--Iae~~TGeGKTla~~lp~~~~al~----G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLS----GR--LAEMQTGEGKTLTATLPAGTAALA----GLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred hCC-CCChHHHHHHHHHhC----CC--eeeeeCCCCcHHHHHHHHHHHhhc----CCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 565 899999999887763 66 999999999999999999987654 4489999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHhHhcCC-------------
Q 010111 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR------------- 191 (518)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~------------- 191 (518)
..+|+++++++|+.+...+ ....++||+|+|...| .++|...-
T Consensus 169 ~~lGlsv~~i~gg~~~~~r-----------------------~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~ 225 (656)
T PRK12898 169 EALGLTVGCVVEDQSPDER-----------------------RAAYGADITYCTNKELVFDYLRDRLALGQRASDARLAL 225 (656)
T ss_pred hhcCCEEEEEeCCCCHHHH-----------------------HHHcCCCEEEECCCchhhhhccccccccccccchhhhh
Confidence 9999999999999764432 2346789999999877 44543321
Q ss_pred -----------CCCCCcccEEEEechhHhhh------------------HhHHhHHHHHHHhccccccc-----------
Q 010111 192 -----------GFTLEHLCYLVVDETDRLLR------------------EAYQAWLPTVLQLTRSDNEN----------- 231 (518)
Q Consensus 192 -----------~~~~~~~~~vViDEah~~~~------------------~~~~~~~~~i~~~~~~~~~~----------- 231 (518)
..-...+.+.|+||+|.++= ...+.+...+...+......
T Consensus 226 ~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~l 305 (656)
T PRK12898 226 ESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIEL 305 (656)
T ss_pred hhhccccCchhhhcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEE
Confidence 11235688999999997631 12222333333322211000
Q ss_pred ----------ccCCccccccc------c-cccchhh---h-----------------cccc---ccCC------------
Q 010111 232 ----------RFSDASTFLPS------A-FGSLKTI---R-----------------RCGV---ERGF------------ 259 (518)
Q Consensus 232 ----------~~~~~~~~~~~------~-~~~~~~~---~-----------------~~~~---~~~~------------ 259 (518)
.+......+.. + ...+... . .++. .+.|
T Consensus 306 t~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE 385 (656)
T PRK12898 306 TEAGRARIAELAESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKE 385 (656)
T ss_pred cHHHHHHHHHHhCcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhc
Confidence 00000000000 0 0000000 0 0000 0000
Q ss_pred --CCCCCC--------------ceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHH
Q 010111 260 --KDKPYP--------------RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 323 (518)
Q Consensus 260 --~~~~~~--------------~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 323 (518)
.-++.. -.+...||||......++...+..+++.+...... .....+..+.++...|...+
T Consensus 386 ~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~---~r~~~~~~v~~t~~~K~~aL 462 (656)
T PRK12898 386 GCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS---QRRHLPDEVFLTAAAKWAAV 462 (656)
T ss_pred CCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc---cceecCCEEEeCHHHHHHHH
Confidence 000000 01246899999877777777777777776655432 22233445556677788888
Q ss_pred HHHHHhc--CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCC
Q 010111 324 VALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401 (518)
Q Consensus 324 ~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDi 401 (518)
...+... .+.++||||+|++.++.+++.|...+ +++..+||++++ |+..+..|+.+...|+||||+++||+||
T Consensus 463 ~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~g---i~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI 537 (656)
T PRK12898 463 AARVRELHAQGRPVLVGTRSVAASERLSALLREAG---LPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDI 537 (656)
T ss_pred HHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC---CCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCc
Confidence 8888754 35789999999999999999999876 899999998765 4455555665666899999999999999
Q ss_pred C---CCC-----EEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchhH
Q 010111 402 E---GVN-----NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVC 445 (518)
Q Consensus 402 p---~v~-----~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~ 445 (518)
+ ++. +||+++.|.|...|.||+||+||.|.+|.+++|++.+|.-
T Consensus 538 ~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l 589 (656)
T PRK12898 538 KLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDL 589 (656)
T ss_pred CCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHHH
Confidence 9 665 9999999999999999999999999999999999987743
No 58
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.8e-39 Score=337.46 Aligned_cols=305 Identities=19% Similarity=0.243 Sum_probs=225.1
Q ss_pred HhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHH-HhccccCceEEEeecCC
Q 010111 61 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA-AIAPAVGLSVGLAVGQS 139 (518)
Q Consensus 61 ~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~-~~~~~~~~~v~~~~g~~ 139 (518)
.++..+..+++++++|+||||||.++.+++++... .+.+++|+.|||++|.|+++.+. .+....+..|+..+++.
T Consensus 9 ~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~----~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~ 84 (819)
T TIGR01970 9 ALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG----IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGE 84 (819)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc----cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccc
Confidence 34444456889999999999999999999998752 23489999999999999999875 45455566666655543
Q ss_pred chHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechh-HhhhHhHHh-H
Q 010111 140 SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD-RLLREAYQA-W 217 (518)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah-~~~~~~~~~-~ 217 (518)
+ .....++|+|+||++|++.+.+ ...++++++|||||+| ++++.++.- .
T Consensus 85 ~---------------------------~~s~~t~I~v~T~G~Llr~l~~--d~~L~~v~~VIiDEaHER~L~~Dl~L~l 135 (819)
T TIGR01970 85 N---------------------------KVSRRTRLEVVTEGILTRMIQD--DPELDGVGALIFDEFHERSLDADLGLAL 135 (819)
T ss_pred c---------------------------ccCCCCcEEEECCcHHHHHHhh--CcccccCCEEEEeccchhhhccchHHHH
Confidence 2 1234579999999999999876 3578999999999999 466655432 2
Q ss_pred HHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeC
Q 010111 218 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297 (518)
Q Consensus 218 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 297 (518)
+..+...++ +..+.++||||++... + ..++.++..+...
T Consensus 136 l~~i~~~lr--------------------------------------~dlqlIlmSATl~~~~--l-~~~l~~~~vI~~~ 174 (819)
T TIGR01970 136 ALDVQSSLR--------------------------------------EDLKILAMSATLDGER--L-SSLLPDAPVVESE 174 (819)
T ss_pred HHHHHHhcC--------------------------------------CCceEEEEeCCCCHHH--H-HHHcCCCcEEEec
Confidence 233333221 2348899999997543 2 2334333333332
Q ss_pred CccccCccccceeeeecCCCCcH-----HHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChH
Q 010111 298 ETRYKLPERLESYKLICESKLKP-----LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 372 (518)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~k~-----~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~ 372 (518)
...+ .++.++.......+. ..+..++.. ..+.+|||++++.+++.+++.|.+....++.+..+||+|++.
T Consensus 175 gr~~----pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~ 249 (819)
T TIGR01970 175 GRSF----PVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLA 249 (819)
T ss_pred Ccce----eeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHH
Confidence 2221 234444444333332 123333333 367899999999999999999986322358899999999999
Q ss_pred HHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCC------------------ccchhhhhhhcccCCCCCc
Q 010111 373 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY------------------IKTYIHRAGRTARAGQLGR 434 (518)
Q Consensus 373 ~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s------------------~~~~~Qr~GR~gR~g~~g~ 434 (518)
+|..+++.|++|..+||||||++++|||||+|++||+++.|.. ..+|.||.||+||. ++|.
T Consensus 250 eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~ 328 (819)
T TIGR01970 250 AQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGV 328 (819)
T ss_pred HHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCE
Confidence 9999999999999999999999999999999999999998753 23589999999999 7999
Q ss_pred EEEEeecchhH
Q 010111 435 CFTLLHKDEVC 445 (518)
Q Consensus 435 ~~~~~~~~e~~ 445 (518)
|+.++++.+..
T Consensus 329 cyrL~t~~~~~ 339 (819)
T TIGR01970 329 CYRLWSEEQHQ 339 (819)
T ss_pred EEEeCCHHHHH
Confidence 99999987763
No 59
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=4.2e-39 Score=330.03 Aligned_cols=325 Identities=15% Similarity=0.107 Sum_probs=228.7
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHH---------hHHHHHHHhhhc--ccCCccEEEEcCcHHHHHHHH
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS---------YALPIVQTLSNR--AVRCLRALVVLPTRDLALQVK 118 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~---------~~l~~~~~l~~~--~~~~~~~lil~Pt~~La~Q~~ 118 (518)
.+++.|.++-.++++.+..+++++++|+||||||.+ |++|.+..+..- .....++++++|||+||.|+.
T Consensus 160 ~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~ 239 (675)
T PHA02653 160 PLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHS 239 (675)
T ss_pred cCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHH
Confidence 577777777667777777899999999999999987 444455544321 123458999999999999999
Q ss_pred HHHHHhccc---cCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCC
Q 010111 119 DVFAAIAPA---VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTL 195 (518)
Q Consensus 119 ~~~~~~~~~---~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~ 195 (518)
..+.+.... .+.++.+.+|+.+..... ......+|+|+|++.. ...+
T Consensus 240 ~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~----------------------t~~k~~~Ilv~T~~L~--------l~~L 289 (675)
T PHA02653 240 ITLLKSLGFDEIDGSPISLKYGSIPDELIN----------------------TNPKPYGLVFSTHKLT--------LNKL 289 (675)
T ss_pred HHHHHHhCccccCCceEEEEECCcchHHhh----------------------cccCCCCEEEEeCccc--------cccc
Confidence 988775433 357788889987621110 1113569999997631 1246
Q ss_pred CcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEe
Q 010111 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275 (518)
Q Consensus 196 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 275 (518)
+++++||+||||.+...+ +.+..++..... ...|.++||||
T Consensus 290 ~~v~~VVIDEaHEr~~~~--DllL~llk~~~~-------------------------------------~~rq~ILmSAT 330 (675)
T PHA02653 290 FDYGTVIIDEVHEHDQIG--DIIIAVARKHID-------------------------------------KIRSLFLMTAT 330 (675)
T ss_pred ccCCEEEccccccCccch--hHHHHHHHHhhh-------------------------------------hcCEEEEEccC
Confidence 789999999999986654 223333321110 01178999999
Q ss_pred ecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecC----------CCCcHHHHHHHHHh--cCCCcEEEEcCChh
Q 010111 276 LTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE----------SKLKPLYLVALLQS--LGEEKCIVFTSSVE 343 (518)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~k~~~l~~~l~~--~~~~~~lVf~~s~~ 343 (518)
++.+...+. .++.+|..+..... ....+++++.... ...+...+..+... ..++.+||||+++.
T Consensus 331 l~~dv~~l~-~~~~~p~~I~I~gr---t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ 406 (675)
T PHA02653 331 LEDDRDRIK-EFFPNPAFVHIPGG---TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVS 406 (675)
T ss_pred CcHhHHHHH-HHhcCCcEEEeCCC---cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHH
Confidence 987777664 56666766655421 1123334433221 11122222222222 23568999999999
Q ss_pred hHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHH-hcCCceEEEEcCccccCCCCCCCCEEEEcC---CCC-----
Q 010111 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF-REGKIQVLVSSDAMTRGMDVEGVNNVVNYD---KPA----- 414 (518)
Q Consensus 344 ~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f-~~g~~~vLvaT~~~~~GiDip~v~~VI~~~---~p~----- 414 (518)
.++.+++.|.... .++.+..+||++++. ++++++| ++|+.+||||||++++|||||+|++||+++ .|.
T Consensus 407 ei~~l~~~L~~~~-~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~ 483 (675)
T PHA02653 407 QCEEYKKYLEKRL-PIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGK 483 (675)
T ss_pred HHHHHHHHHHhhc-CCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCc
Confidence 9999999998752 248899999999984 5677787 689999999999999999999999999998 554
Q ss_pred ----CccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHH
Q 010111 415 ----YIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFK 451 (518)
Q Consensus 415 ----s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~ 451 (518)
|.+.|+||+|||||. ++|.|+.|+++++...+.++.
T Consensus 484 ~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri~ 523 (675)
T PHA02653 484 EMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRID 523 (675)
T ss_pred ccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHHh
Confidence 778999999999999 799999999988765444443
No 60
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.1e-38 Score=331.27 Aligned_cols=337 Identities=24% Similarity=0.281 Sum_probs=251.4
Q ss_pred CCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHH
Q 010111 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (518)
Q Consensus 35 l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La 114 (518)
+++.+...++..|+.++++.|+.++...+. .++|++|++|||||||+.+++.+++.+.++ +.+++|+||+++||
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~---~~~N~li~aPTgsGKTlIA~lai~~~l~~~---~~k~vYivPlkALa 89 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLL---SDENVLISAPTGSGKTLIALLAILSTLLEG---GGKVVYIVPLKALA 89 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhcccc---CCCcEEEEcCCCCchHHHHHHHHHHHHHhc---CCcEEEEeChHHHH
Confidence 778999999999999999999999755443 479999999999999999999999998875 45899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCC
Q 010111 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (518)
Q Consensus 115 ~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 194 (518)
.+.+++|+++ ..+|++|...+|+....... ..+++|+|+||+++-..+++.. ..
T Consensus 90 ~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~~------------------------l~~~~ViVtT~EK~Dsl~R~~~-~~ 143 (766)
T COG1204 90 EEKYEEFSRL-EELGIRVGISTGDYDLDDER------------------------LARYDVIVTTPEKLDSLTRKRP-SW 143 (766)
T ss_pred HHHHHHhhhH-HhcCCEEEEecCCcccchhh------------------------hccCCEEEEchHHhhHhhhcCc-ch
Confidence 9999999944 55699999999998755421 2467999999999988887744 47
Q ss_pred CCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeE
Q 010111 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (518)
Q Consensus 195 ~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (518)
+..+++||+||+|.+.+...++.++.|+....... +.++++.+||
T Consensus 144 ~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~-----------------------------------~~~rivgLSA 188 (766)
T COG1204 144 IEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN-----------------------------------ELIRIVGLSA 188 (766)
T ss_pred hhcccEEEEeeeeecCCcccCceehhHHHHHHhhC-----------------------------------cceEEEEEee
Confidence 88999999999998888889999999988765432 1248899999
Q ss_pred eecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCC------cHHHHHH-HHHh-cCCCcEEEEcCChhhHH
Q 010111 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL------KPLYLVA-LLQS-LGEEKCIVFTSSVESTH 346 (518)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------k~~~l~~-~l~~-~~~~~~lVf~~s~~~~~ 346 (518)
|+++. ..++.+.-.++............+.............. ....+.. .+.. ..++++||||+|++.+.
T Consensus 189 TlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~ 267 (766)
T COG1204 189 TLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAE 267 (766)
T ss_pred ecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHH
Confidence 99644 44444333332211111111111111112222222111 1222222 2232 24779999999999999
Q ss_pred HHHHHHhhc----C-------------C-----------------CceeEEEccccCChHHHHHHHHHHhcCCceEEEEc
Q 010111 347 RLCTLLNHF----G-------------E-----------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 392 (518)
Q Consensus 347 ~l~~~L~~~----~-------------~-----------------~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT 392 (518)
..++.+... . . ....++.||++++.++|..+.+.|+.|.++||+||
T Consensus 268 ~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~T 347 (766)
T COG1204 268 KTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVST 347 (766)
T ss_pred HHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEec
Confidence 999998830 0 0 01357899999999999999999999999999999
Q ss_pred CccccCCCCCCCCEEE----EcC-----CCCCccchhhhhhhcccCCC--CCcEEEEe
Q 010111 393 DAMTRGMDVEGVNNVV----NYD-----KPAYIKTYIHRAGRTARAGQ--LGRCFTLL 439 (518)
Q Consensus 393 ~~~~~GiDip~v~~VI----~~~-----~p~s~~~~~Qr~GR~gR~g~--~g~~~~~~ 439 (518)
++++.|+|+|.-.+|| -|+ .+.+..+++|+.|||||-|- .|.++++.
T Consensus 348 pTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~ 405 (766)
T COG1204 348 PTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILA 405 (766)
T ss_pred hHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEe
Confidence 9999999999655555 244 34457789999999999874 46677777
No 61
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.1e-38 Score=335.62 Aligned_cols=305 Identities=21% Similarity=0.250 Sum_probs=223.7
Q ss_pred HHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHH-HhccccCceEEEeecC
Q 010111 60 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA-AIAPAVGLSVGLAVGQ 138 (518)
Q Consensus 60 ~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~-~~~~~~~~~v~~~~g~ 138 (518)
+.++..+..++++++.||||||||.+|.+++++.... ..+++|+.|||++|.|+++.+. .+....+..++..+++
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~----~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~ 86 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI----NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRA 86 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc----CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecC
Confidence 3445555568999999999999999999999975322 2389999999999999999885 4555567777777665
Q ss_pred CchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhH-hhhHhHH-h
Q 010111 139 SSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR-LLREAYQ-A 216 (518)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~-~~~~~~~-~ 216 (518)
.+. .....+|+|+|||+|++.+.. ...++++++|||||+|. .++..+. .
T Consensus 87 ~~~---------------------------~~~~t~I~v~T~G~Llr~l~~--d~~L~~v~~IIlDEaHER~l~~Dl~L~ 137 (812)
T PRK11664 87 ESK---------------------------VGPNTRLEVVTEGILTRMIQR--DPELSGVGLVILDEFHERSLQADLALA 137 (812)
T ss_pred ccc---------------------------cCCCCcEEEEChhHHHHHHhh--CCCcCcCcEEEEcCCCccccccchHHH
Confidence 431 123458999999999998886 35789999999999996 3332221 1
Q ss_pred HHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEee
Q 010111 217 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296 (518)
Q Consensus 217 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~ 296 (518)
.+..+...++ +..+.++||||++.. .+. .++.++..+..
T Consensus 138 ll~~i~~~lr--------------------------------------~~lqlilmSATl~~~--~l~-~~~~~~~~I~~ 176 (812)
T PRK11664 138 LLLDVQQGLR--------------------------------------DDLKLLIMSATLDND--RLQ-QLLPDAPVIVS 176 (812)
T ss_pred HHHHHHHhCC--------------------------------------ccceEEEEecCCCHH--HHH-HhcCCCCEEEe
Confidence 2222222211 234889999999643 232 33443333333
Q ss_pred CCccccCccccceeeeecCCCCcHH-----HHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCCh
Q 010111 297 GETRYKLPERLESYKLICESKLKPL-----YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 371 (518)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~k~~-----~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~ 371 (518)
....+ .+.+++.......+.. .+..++.. ..+.+|||++++.+++.+++.|......++.+..+||++++
T Consensus 177 ~gr~~----pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~ 251 (812)
T PRK11664 177 EGRSF----PVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSL 251 (812)
T ss_pred cCccc----cceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCH
Confidence 22211 2444444333333332 23333332 36899999999999999999998632235889999999999
Q ss_pred HHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCC------------------ccchhhhhhhcccCCCCC
Q 010111 372 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY------------------IKTYIHRAGRTARAGQLG 433 (518)
Q Consensus 372 ~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s------------------~~~~~Qr~GR~gR~g~~g 433 (518)
.+|..+++.|++|..+||||||++++|||||+|++||+++.++. ..+|.||.||+||. .+|
T Consensus 252 ~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G 330 (812)
T PRK11664 252 AEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPG 330 (812)
T ss_pred HHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCc
Confidence 99999999999999999999999999999999999999887643 35799999999999 699
Q ss_pred cEEEEeecchh
Q 010111 434 RCFTLLHKDEV 444 (518)
Q Consensus 434 ~~~~~~~~~e~ 444 (518)
.|+.++++.+.
T Consensus 331 ~cyrL~t~~~~ 341 (812)
T PRK11664 331 ICLHLYSKEQA 341 (812)
T ss_pred EEEEecCHHHH
Confidence 99999998766
No 62
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-38 Score=292.31 Aligned_cols=285 Identities=25% Similarity=0.375 Sum_probs=222.0
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhcccc---CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEE
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAV---GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~---~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv 177 (518)
.+.++|+-|+|+|++|.++.+++|-... .++..++.||.....+..+ +..+.+|+|
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~q---------------------l~~g~~ivv 344 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQ---------------------LKDGTHIVV 344 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHH---------------------hhcCceeee
Confidence 3579999999999999999766654433 3455577777666666543 456789999
Q ss_pred eCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhcccccc
Q 010111 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (518)
Q Consensus 178 ~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (518)
+||+++.+.+.+ +.+.+.+.+++|+||||.++..++.+.+.++...++....+.
T Consensus 345 GtpgRl~~~is~-g~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg------------------------- 398 (725)
T KOG0349|consen 345 GTPGRLLQPISK-GLVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDG------------------------- 398 (725)
T ss_pred cCchhhhhhhhc-cceeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCC-------------------------
Confidence 999999999988 567899999999999999999999998888887665433221
Q ss_pred CCCCCCCCceeeEEEeEeecC-ChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCC-------------------
Q 010111 258 GFKDKPYPRLVKMVLSATLTQ-DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK------------------- 317 (518)
Q Consensus 258 ~~~~~~~~~~~~i~~SaT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 317 (518)
.++|.++.|||+.. ++....+..++-|..+...... .+|+.++++...+.+.
T Consensus 399 -------~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD-~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~ 470 (725)
T KOG0349|consen 399 -------FRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGED-LVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHT 470 (725)
T ss_pred -------cccccceeeeEEeEEEeeehhhhhccCceeEeccccc-ccchhhccceeecCCccCccHHHHhhhhccCCccc
Confidence 23477889999753 3344444555566655554332 4555555543322211
Q ss_pred -----------C---------cHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHH
Q 010111 318 -----------L---------KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 377 (518)
Q Consensus 318 -----------~---------k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~ 377 (518)
+ |.++-...+++..-.++||||.++..|+.+.+++++.+...+.+.++||+..+.+|.+-
T Consensus 471 kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~n 550 (725)
T KOG0349|consen 471 KDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKAN 550 (725)
T ss_pred ccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHH
Confidence 0 01112222334455799999999999999999999988888999999999999999999
Q ss_pred HHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEee
Q 010111 378 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440 (518)
Q Consensus 378 ~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 440 (518)
++.|+.++.+.|||||+++||+||.++.++||..+|.....|+||+||+||+.+-|.+++++.
T Consensus 551 le~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 551 LESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred HHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEee
Confidence 999999999999999999999999999999999999999999999999999999999998885
No 63
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=2.7e-37 Score=335.62 Aligned_cols=317 Identities=20% Similarity=0.274 Sum_probs=216.3
Q ss_pred HHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHH
Q 010111 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (518)
Q Consensus 37 ~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q 116 (518)
.++.+.+.+.....|+++|..+++.++ .|+|++++||||+|||. |.+|+...+.. .+.+++|++||++||.|
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il----~G~d~vi~ApTGsGKT~-f~l~~~~~l~~---~g~~vLIL~PTreLa~Q 136 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVL----RGDSFAIIAPTGVGKTT-FGLAMSLFLAK---KGKRCYIILPTTLLVIQ 136 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHh----CCCeEEEECCCCCCHHH-HHHHHHHHHHh---cCCeEEEEeCHHHHHHH
Confidence 345555655333489999999988776 49999999999999997 66777666543 25689999999999999
Q ss_pred HHHHHHHhccccCceE---EEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhc-CCCcEEEeCChHHHHhHhcCCC
Q 010111 117 VKDVFAAIAPAVGLSV---GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRG 192 (518)
Q Consensus 117 ~~~~~~~~~~~~~~~v---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~ 192 (518)
+++.++.++...++.+ ++++|+.+...+...+ ..+. .+++|+|+||++|.+.+....
T Consensus 137 i~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~------------------~~l~~~~~dIlV~Tp~rL~~~~~~l~- 197 (1171)
T TIGR01054 137 VAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFM------------------ERIENGDFDILITTTMFLSKNYDELG- 197 (1171)
T ss_pred HHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHH------------------HHHhcCCCCEEEECHHHHHHHHHHhc-
Confidence 9999999988776554 3567887766543221 1222 358999999999998876521
Q ss_pred CCCCcccEEEEechhHhhh-----------HhHHh-HHHHHHHhcccccccccCCcccccccccccchhhhccccccCCC
Q 010111 193 FTLEHLCYLVVDETDRLLR-----------EAYQA-WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (518)
Q Consensus 193 ~~~~~~~~vViDEah~~~~-----------~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (518)
. +++++|+||||+|++ .||.+ .++.++..+...... .....+...... ..
T Consensus 198 --~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~----------~~~~~~~~~~~~-----~~ 259 (1171)
T TIGR01054 198 --P-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKL----------YRALHAKKRLEL-----LE 259 (1171)
T ss_pred --C-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhcccc----------chHHHHHHHHHH-----HH
Confidence 2 799999999999998 45554 355555443211100 000000000000 00
Q ss_pred CCCCCce--eeEEEeEee-cCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEE
Q 010111 261 DKPYPRL--VKMVLSATL-TQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 337 (518)
Q Consensus 261 ~~~~~~~--~~i~~SaT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lV 337 (518)
..+ ... +.+++|||. +...... .+..+..+.++.... ....+.+.+..... +...+..+++.. +.++||
T Consensus 260 ~~~-~~~q~~li~~SAT~~p~~~~~~---l~r~ll~~~v~~~~~-~~r~I~~~~~~~~~--~~~~L~~ll~~l-~~~~IV 331 (1171)
T TIGR01054 260 AIP-GKKRGCLIVSSATGRPRGKRAK---LFRELLGFEVGGGSD-TLRNVVDVYVEDED--LKETLLEIVKKL-GTGGIV 331 (1171)
T ss_pred hhh-hccCcEEEEEeCCCCccccHHH---HcccccceEecCccc-cccceEEEEEeccc--HHHHHHHHHHHc-CCCEEE
Confidence 000 111 356789994 4433221 223333344443332 23445555443332 245566777665 468999
Q ss_pred EcCCh---hhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEE----cCccccCCCCCC-CCEEEE
Q 010111 338 FTSSV---ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEG-VNNVVN 409 (518)
Q Consensus 338 f~~s~---~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLva----T~~~~~GiDip~-v~~VI~ 409 (518)
||+++ +.|+.+++.|...+ +++..+||++++ .+++.|++|+++|||| ||+++||||+|+ +++|||
T Consensus 332 Fv~t~~~~~~a~~l~~~L~~~g---~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~ 404 (1171)
T TIGR01054 332 YVSIDYGKEKAEEIAEFLENHG---VKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVF 404 (1171)
T ss_pred EEeccccHHHHHHHHHHHHhCC---ceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEE
Confidence 99999 99999999998766 899999999973 6899999999999999 599999999999 899999
Q ss_pred cCCC
Q 010111 410 YDKP 413 (518)
Q Consensus 410 ~~~p 413 (518)
||.|
T Consensus 405 ~~~P 408 (1171)
T TIGR01054 405 LGVP 408 (1171)
T ss_pred ECCC
Confidence 8876
No 64
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=4.5e-38 Score=319.77 Aligned_cols=307 Identities=17% Similarity=0.177 Sum_probs=212.4
Q ss_pred CccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcccc
Q 010111 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (518)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 128 (518)
..|+++|.+|++.++. ++++++++|||+|||+++...+ ..+... ...++||++||++|+.|+.+.+.+++...
T Consensus 113 ~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~-~~~~~~--~~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 113 IEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLS-RYYLEN--YEGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred CCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHH-HHHHhc--CCCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 4899999999887764 7889999999999999865432 222222 23389999999999999999999987544
Q ss_pred CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhH
Q 010111 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (518)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (518)
...+..+.+|... ..+.+|+|+||+++.+.... .++++++||+||||+
T Consensus 186 ~~~~~~i~~g~~~----------------------------~~~~~I~VaT~qsl~~~~~~----~~~~~~~iIvDEaH~ 233 (501)
T PHA02558 186 REAMHKIYSGTAK----------------------------DTDAPIVVSTWQSAVKQPKE----WFDQFGMVIVDECHL 233 (501)
T ss_pred ccceeEEecCccc----------------------------CCCCCEEEeeHHHHhhchhh----hccccCEEEEEchhc
Confidence 4445555555421 12469999999998764322 367899999999999
Q ss_pred hhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhh-hcc
Q 010111 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA-QLD 287 (518)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~-~~~ 287 (518)
+.+..+. .++..++. ..+.+++|||+........ ...
T Consensus 234 ~~~~~~~----~il~~~~~--------------------------------------~~~~lGLTATp~~~~~~~~~~~~ 271 (501)
T PHA02558 234 FTGKSLT----SIITKLDN--------------------------------------CKFKFGLTGSLRDGKANILQYVG 271 (501)
T ss_pred ccchhHH----HHHHhhhc--------------------------------------cceEEEEeccCCCccccHHHHHH
Confidence 9765543 33333211 1167999999864322111 111
Q ss_pred CCCCeEEeeCCccc-----cCcc---------------cc-----c-eeeeecCCCCcHHHHHHHHHhc--CCCcEEEEc
Q 010111 288 LHHPLFLTTGETRY-----KLPE---------------RL-----E-SYKLICESKLKPLYLVALLQSL--GEEKCIVFT 339 (518)
Q Consensus 288 ~~~~~~~~~~~~~~-----~~~~---------------~~-----~-~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~ 339 (518)
+..|.......... ..+. .. . .+....+...+...+..+.... .+.+++|||
T Consensus 272 ~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~ 351 (501)
T PHA02558 272 LFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMF 351 (501)
T ss_pred hhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 11222221111000 0000 00 0 0000111222333333333322 357899999
Q ss_pred CChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEc-CccccCCCCCCCCEEEEcCCCCCccc
Q 010111 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS-DAMTRGMDVEGVNNVVNYDKPAYIKT 418 (518)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~GiDip~v~~VI~~~~p~s~~~ 418 (518)
+++++++.+++.|+..+ .++..+||+++..+|..+++.|++|+..||||| +++++|+|+|++++||+++++.|...
T Consensus 352 ~~~~h~~~L~~~L~~~g---~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~ 428 (501)
T PHA02558 352 KYVEHGKPLYEMLKKVY---DKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKII 428 (501)
T ss_pred EEHHHHHHHHHHHHHcC---CCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhh
Confidence 99999999999999866 799999999999999999999999999999998 89999999999999999999999999
Q ss_pred hhhhhhhcccCCCCCcEEEEe
Q 010111 419 YIHRAGRTARAGQLGRCFTLL 439 (518)
Q Consensus 419 ~~Qr~GR~gR~g~~g~~~~~~ 439 (518)
|+||+||++|.+..+....++
T Consensus 429 ~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 429 VLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred hhhhhhccccCCCCCceEEEE
Confidence 999999999987555433333
No 65
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=6.2e-38 Score=346.86 Aligned_cols=358 Identities=17% Similarity=0.195 Sum_probs=247.9
Q ss_pred HHHHHHHHh-CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHH
Q 010111 37 PRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (518)
Q Consensus 37 ~~~~~~l~~-~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~ 115 (518)
.++.+.+++ +|| +|+++|.++++.++. |+|+++.||||+|||++++++++.... ++.++||++||++|+.
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~----G~d~li~APTGsGKTl~~~~~al~~~~----~g~~aLVl~PTreLa~ 136 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILR----GKSFSIVAPTGMGKSTFGAFIALFLAL----KGKKCYIILPTTLLVK 136 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHc----CCCEEEEEcCCCCHHHHHHHHHHHHHh----cCCeEEEEECHHHHHH
Confidence 456667766 899 799999999888875 999999999999999966655553322 3458999999999999
Q ss_pred HHHHHHHHhcccc--CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhc-CCCcEEEeCChHHHHhHhcCCC
Q 010111 116 QVKDVFAAIAPAV--GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRG 192 (518)
Q Consensus 116 Q~~~~~~~~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~ 192 (518)
|+.+.++.++... ++++..++|+.+...+... ++.+. ..++|+|+||++|.+.+...
T Consensus 137 Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~------------------~~~l~~g~~dILV~TPgrL~~~~~~l-- 196 (1638)
T PRK14701 137 QTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEF------------------LERIENGDFDILVTTAQFLARNFPEM-- 196 (1638)
T ss_pred HHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHH------------------HHHHhcCCCCEEEECCchhHHhHHHH--
Confidence 9999999988765 4667788898876655322 12233 34899999999998876541
Q ss_pred CCCCcccEEEEechhHhhh-----------HhHHhHHHH-HHHhcccccccccCCcccccccccccchhhhccccccCCC
Q 010111 193 FTLEHLCYLVVDETDRLLR-----------EAYQAWLPT-VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (518)
Q Consensus 193 ~~~~~~~~vViDEah~~~~-----------~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (518)
. ..+++++|+||||+|++ .+|.+.+.. ++..+......... .....+..+.... .
T Consensus 197 ~-~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~-------~~~~~~~~l~~~~-----~ 263 (1638)
T PRK14701 197 K-HLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIE-------DAMEKREILNKEI-----E 263 (1638)
T ss_pred h-hCCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccc-------hhhhhhhhhhhhh-----h
Confidence 1 26799999999999986 356655542 22232210000000 0000000000000 0
Q ss_pred CCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcC
Q 010111 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 340 (518)
Q Consensus 261 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~ 340 (518)
..+......+++|||.+...... ..+..+..+.++.... ....+.+.++..+...+ ..+..+++.. +.++||||+
T Consensus 264 ~~~~~~~~ll~~SAT~~~r~~~~--~l~~~~l~f~v~~~~~-~lr~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~ 338 (1638)
T PRK14701 264 KIGNKIGCLIVASATGKAKGDRV--KLYRELLGFEVGSGRS-ALRNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVP 338 (1638)
T ss_pred hcCCCccEEEEEecCCCchhHHH--HHhhcCeEEEecCCCC-CCCCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEe
Confidence 00111123577999987532211 2234555566655443 33445555554443433 4677777766 578999999
Q ss_pred Chhh---HHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEc----CccccCCCCCC-CCEEEEcCC
Q 010111 341 SVES---THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS----DAMTRGMDVEG-VNNVVNYDK 412 (518)
Q Consensus 341 s~~~---~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT----~~~~~GiDip~-v~~VI~~~~ 412 (518)
+++. |+.+++.|...+ +++..+||+ |...+++|++|+++||||| ++++||||+|+ |++||+||.
T Consensus 339 t~~~~e~ae~la~~L~~~G---i~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~ 410 (1638)
T PRK14701 339 IDEGAEKAEEIEKYLLEDG---FKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGV 410 (1638)
T ss_pred ccccchHHHHHHHHHHHCC---CeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCC
Confidence 9876 589999999866 899999995 8899999999999999999 58999999998 999999999
Q ss_pred CC---Cccchhhhh-------------hhcccCCCCCcEEEEeecchhHHHHH
Q 010111 413 PA---YIKTYIHRA-------------GRTARAGQLGRCFTLLHKDEVCLVKR 449 (518)
Q Consensus 413 p~---s~~~~~Qr~-------------GR~gR~g~~g~~~~~~~~~e~~~~~~ 449 (518)
|. +...|.|.. ||+||.|.++.++..+...+...+++
T Consensus 411 Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~ 463 (1638)
T PRK14701 411 PKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRS 463 (1638)
T ss_pred CCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHH
Confidence 99 777676665 99999998888876666666644443
No 66
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.5e-37 Score=317.30 Aligned_cols=371 Identities=18% Similarity=0.196 Sum_probs=247.4
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
+|. .|+++|..+...+. .|+ ++.+.||+|||+++++|++.+... +..++|++||++||.|.++.+..+.
T Consensus 75 ~g~-~p~~vQl~~~~~l~----~G~--Iaem~TGeGKTL~a~lp~~l~al~----G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLH----EGN--IAEMQTGEGKTLTATMPLYLNALE----GKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred hCC-CCchHHHHhHHHHc----CCc--eeeecCCCcchHHHHHHHHHHHHc----CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 576 89999988865443 344 999999999999999999866554 3489999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHhHhcCC-----CCCCCccc
Q 010111 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 199 (518)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~-----~~~~~~~~ 199 (518)
..+|++++++.|+.+..... .....++|+++||++| .+++...- ...++.+.
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r----------------------~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~ 201 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEK----------------------KAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLN 201 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHH----------------------HHhcCCCEEEECCccccchhHHhccccchhhhcccccc
Confidence 99999999999998732221 1234589999999998 55554321 13467899
Q ss_pred EEEEechhHhhhH----------------hHHhHHHHHHHhcccccccc---------cC-----------Cccccc---
Q 010111 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDNENR---------FS-----------DASTFL--- 240 (518)
Q Consensus 200 ~vViDEah~~~~~----------------~~~~~~~~i~~~~~~~~~~~---------~~-----------~~~~~~--- 240 (518)
++|+||||+++=+ ..+.+...+...+....... +. ......
T Consensus 202 ~~IvDEaDsiLiDea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~ 281 (790)
T PRK09200 202 YAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLE 281 (790)
T ss_pred eEEEeccccceeccCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChh
Confidence 9999999987411 12223333333222110000 00 000000
Q ss_pred -----ccccccchhhh--------------------cccc---ccCCC--------------CCCCC-------------
Q 010111 241 -----PSAFGSLKTIR--------------------RCGV---ERGFK--------------DKPYP------------- 265 (518)
Q Consensus 241 -----~~~~~~~~~~~--------------------~~~~---~~~~~--------------~~~~~------------- 265 (518)
......+.... .++. .+.+. -.+..
T Consensus 282 ~~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr 361 (790)
T PRK09200 282 HQVLYRHIILALRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFR 361 (790)
T ss_pred hhHHHHHHHHHHHHHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHH
Confidence 00000000000 0000 00000 00000
Q ss_pred -ceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHh--cCCCcEEEEcCCh
Q 010111 266 -RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSV 342 (518)
Q Consensus 266 -~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~ 342 (518)
-.+...||+|......++...+-...+ .++.......... .-.+......|...+...+.. ..+.++||||+|+
T Consensus 362 ~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~--~IPt~kp~~r~d~-~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~ 438 (790)
T PRK09200 362 MFPKLSGMTGTAKTEEKEFFEVYNMEVV--QIPTNRPIIRIDY-PDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSI 438 (790)
T ss_pred HhHHHhccCCCChHHHHHHHHHhCCcEE--ECCCCCCcccccC-CCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 012467888875544444443333322 2222211111111 122344556788888887765 3578999999999
Q ss_pred hhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCC---CCCC-----EEEEcCCCC
Q 010111 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV---EGVN-----NVVNYDKPA 414 (518)
Q Consensus 343 ~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDi---p~v~-----~VI~~~~p~ 414 (518)
+.++.+++.|...+ +++..+||++++.++..+..+++.| +|+|||++++||+|| |++. +||+++.|.
T Consensus 439 ~~se~l~~~L~~~g---i~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~ 513 (790)
T PRK09200 439 EQSETFSKLLDEAG---IPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERME 513 (790)
T ss_pred HHHHHHHHHHHHCC---CCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCC
Confidence 99999999999876 8999999999998888888887776 799999999999999 6898 999999999
Q ss_pred CccchhhhhhhcccCCCCCcEEEEeecchhHHH----HHHHHHHHhh
Q 010111 415 YIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLV----KRFKKLLQKA 457 (518)
Q Consensus 415 s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~----~~~~~~l~~~ 457 (518)
|...|.||+||+||.|.+|.+++|++.+|.-+- +++.+++...
T Consensus 514 s~r~y~qr~GRtGR~G~~G~s~~~is~eD~l~~~~~~~~~~~~~~~~ 560 (790)
T PRK09200 514 SRRVDLQLRGRSGRQGDPGSSQFFISLEDDLLKRFAPEELEKLKKKL 560 (790)
T ss_pred CHHHHHHhhccccCCCCCeeEEEEEcchHHHHHhhccHHHHHHHHHc
Confidence 999999999999999999999999998775332 2444555443
No 67
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=5.2e-37 Score=312.87 Aligned_cols=372 Identities=18% Similarity=0.174 Sum_probs=239.0
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
+|. .|+++|..+ .+. .++..++.++||+|||++|++|++.+...+ ..++|++|+++||.|+++++..+.
T Consensus 67 lgl-rpydVQlig--~l~----l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g----~~V~VVTpn~yLA~Rdae~m~~l~ 135 (762)
T TIGR03714 67 LGM-FPYDVQVLG--AIV----LHQGNIAEMKTGEGKTLTATMPLYLNALTG----KGAMLVTTNDYLAKRDAEEMGPVY 135 (762)
T ss_pred cCC-CccHHHHHH--HHH----hcCCceeEecCCcchHHHHHHHHHHHhhcC----CceEEeCCCHHHHHHHHHHHHHHH
Confidence 454 455555443 332 234479999999999999999988766543 369999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHhHhcC-----CCCCCCccc
Q 010111 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHLC 199 (518)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~-----~~~~~~~~~ 199 (518)
..+|+++++.+++........ ..+....+++|+++||++| .+.+... ....+..+.
T Consensus 136 ~~LGLsv~~~~~~s~~~~~~~------------------~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~ 197 (762)
T TIGR03714 136 EWLGLTVSLGVVDDPDEEYDA------------------NEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFN 197 (762)
T ss_pred hhcCCcEEEEECCCCccccCH------------------HHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCc
Confidence 999999998877632111000 0012235789999999999 5555321 224467899
Q ss_pred EEEEechhHhhhHh----------------HHhHHHHHHHhccccccc---------ccCCcc----------cccc--c
Q 010111 200 YLVVDETDRLLREA----------------YQAWLPTVLQLTRSDNEN---------RFSDAS----------TFLP--S 242 (518)
Q Consensus 200 ~vViDEah~~~~~~----------------~~~~~~~i~~~~~~~~~~---------~~~~~~----------~~~~--~ 242 (518)
++|+||||.|+-+. .+.....+...+...... .+.+.+ ..+. .
T Consensus 198 ~~IVDEaDsILiDeartpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~ 277 (762)
T TIGR03714 198 YVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEE 277 (762)
T ss_pred EEEEecHhhHhhccCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChh
Confidence 99999999985322 222222333322211000 000000 0000 0
Q ss_pred c-------cccchhhh--------------------cccc---ccCCC--------------C----------------C
Q 010111 243 A-------FGSLKTIR--------------------RCGV---ERGFK--------------D----------------K 262 (518)
Q Consensus 243 ~-------~~~~~~~~--------------------~~~~---~~~~~--------------~----------------~ 262 (518)
+ ...+.... .++. .+.+. - .
T Consensus 278 ~~~~~~~i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr 357 (762)
T TIGR03714 278 YFELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFK 357 (762)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHh
Confidence 0 00000000 0000 00000 0 0
Q ss_pred CCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHh--cCCCcEEEEcC
Q 010111 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTS 340 (518)
Q Consensus 263 ~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~ 340 (518)
.| .+...||+|......++...+-...+.+.+.. ...... ..-.+......|...+...+.. ..+.++||||+
T Consensus 358 ~Y--~kl~GmTGTa~~~~~Ef~~iY~l~v~~IPt~k--p~~r~d-~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~ 432 (762)
T TIGR03714 358 MF--NKLSGMTGTGKVAEKEFIETYSLSVVKIPTNK--PIIRID-YPDKIYATLPEKLMATLEDVKEYHETGQPVLLITG 432 (762)
T ss_pred hC--chhcccCCCChhHHHHHHHHhCCCEEEcCCCC--Ceeeee-CCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 00 12456777765555555543333322222221 111111 1123445566788888887765 45789999999
Q ss_pred ChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCC---------CCCEEEEcC
Q 010111 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE---------GVNNVVNYD 411 (518)
Q Consensus 341 s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip---------~v~~VI~~~ 411 (518)
|++.++.+++.|...+ +++..+||++++.++..+.++++.| .|+|||++++||+||| ++.+|++++
T Consensus 433 s~~~se~ls~~L~~~g---i~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~ 507 (762)
T TIGR03714 433 SVEMSEIYSELLLREG---IPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTER 507 (762)
T ss_pred cHHHHHHHHHHHHHCC---CCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecC
Confidence 9999999999999876 8999999999999988888877777 7999999999999999 899999999
Q ss_pred CCCCccchhhhhhhcccCCCCCcEEEEeecchhHHH----HHHHHHHHhh
Q 010111 412 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLV----KRFKKLLQKA 457 (518)
Q Consensus 412 ~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~----~~~~~~l~~~ 457 (518)
+|..... .||+||+||.|.+|.+++|++.+|.-+- +++.+++...
T Consensus 508 ~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~l~~~~~~~~~~~~~~~~ 556 (762)
T TIGR03714 508 MENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDDLIKRWSPSWLKKYYKKY 556 (762)
T ss_pred CCCcHHH-HHhhhcccCCCCceeEEEEEccchhhhhhcchHHHHHHHHHc
Confidence 9987766 9999999999999999999998775432 3455565553
No 68
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=1.6e-37 Score=305.86 Aligned_cols=314 Identities=18% Similarity=0.164 Sum_probs=208.5
Q ss_pred CEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhc
Q 010111 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 150 (518)
++++.||||||||.+|++|++..+... ...+++|++|+++|+.|+++.+..++. .+++..+|+........
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~--~~~~ii~v~P~~~L~~q~~~~l~~~f~---~~~~~~~~~~~~~~~~~---- 71 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ--KADRVIIALPTRATINAMYRRAKELFG---SNLGLLHSSSSFKRIKE---- 71 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC--CCCeEEEEeehHHHHHHHHHHHHHHhC---cccEEeeccHHHHHHhc----
Confidence 579999999999999999999886543 345899999999999999999998753 24555555543211000
Q ss_pred CCccccCccCCchhHHHhh------cCCCcEEEeCChHHHHhHhcC-CC--CCCC--cccEEEEechhHhhhHhHHhHHH
Q 010111 151 RPKLEAGICYDPEDVLQEL------QSAVDILVATPGRLMDHINAT-RG--FTLE--HLCYLVVDETDRLLREAYQAWLP 219 (518)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~------~~~~~Iiv~Tp~~l~~~l~~~-~~--~~~~--~~~~vViDEah~~~~~~~~~~~~ 219 (518)
.... ......+... ...++|+|+||++++..+... .. ..+. ..++||+||||.+.+.++.. +.
T Consensus 72 ~~~~-----~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~ 145 (358)
T TIGR01587 72 MGDS-----EEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-IL 145 (358)
T ss_pred cCCc-----hhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HH
Confidence 0000 0000001111 123689999999998877652 11 1111 23789999999998776544 44
Q ss_pred HHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCc
Q 010111 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299 (518)
Q Consensus 220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~ 299 (518)
.++..+.. ...+.+++|||++.....+.......+........
T Consensus 146 ~~l~~l~~-------------------------------------~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~ 188 (358)
T TIGR01587 146 AVLEVLKD-------------------------------------NDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLK 188 (358)
T ss_pred HHHHHHHH-------------------------------------cCCCEEEEecCchHHHHHHHhcCCCcccccCCCCc
Confidence 44444321 12278999999985555444333222111111100
Q ss_pred cccCccccceee-e-ecCCCCcHHHHHHHHHhc-CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHH
Q 010111 300 RYKLPERLESYK-L-ICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 376 (518)
Q Consensus 300 ~~~~~~~~~~~~-~-~~~~~~k~~~l~~~l~~~-~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~ 376 (518)
.......+.. . ......+...+..+++.. .++++||||++++.|+.+++.|.+.+. ...+..+||++++.+|..
T Consensus 189 --~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~-~~~~~~~h~~~~~~~r~~ 265 (358)
T TIGR01587 189 --EERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAP-EEEIMLLHSRFTEKDRAK 265 (358)
T ss_pred --cccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcC-CCeEEEEECCCCHHHHHH
Confidence 0000111111 1 112234555666666543 467999999999999999999987542 246899999999999976
Q ss_pred ----HHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCC----CcEEEEeecc
Q 010111 377 ----TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL----GRCFTLLHKD 442 (518)
Q Consensus 377 ----~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~----g~~~~~~~~~ 442 (518)
+++.|++|+.+|||||+++++|+|++ +++||++..| ...|+||+||+||.|+. |.+++|....
T Consensus 266 ~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 266 KEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 48899999999999999999999996 8899988776 67899999999998854 3566666543
No 69
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=5.4e-36 Score=303.40 Aligned_cols=368 Identities=20% Similarity=0.202 Sum_probs=247.2
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
+|. .|+++|..+...+ ++..++.++||+|||++|++|++-+...+ ..+.|++||++||.|.++++..+.
T Consensus 53 lg~-~p~~vQlig~~~l------~~G~Iaem~TGeGKTLva~lpa~l~aL~G----~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIAL------HKGKIAEMKTGEGKTLTATLPAYLNALTG----KGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred hCC-CccchHHhhhhhh------cCCceeeecCCCccHHHHHHHHHHHHHhC----CCEEEEcCCHHHHHHHHHHHHHHh
Confidence 675 8889998775433 33449999999999999999996443332 369999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHhHhcCC-----CCCCCccc
Q 010111 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 199 (518)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~-----~~~~~~~~ 199 (518)
+.+|+++++++|+.+...+.. ...++|+++||++| ++++.... ...++.+.
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~-----------------------~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~ 178 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERRE-----------------------AYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFH 178 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHH-----------------------hcCCCEEEECCCchhhHHHhcccccchhhhhccccc
Confidence 999999999999988654422 23579999999999 88887632 24578899
Q ss_pred EEEEechhHhhhHh-HHh---------------HHHHHHHhccccc---------------------------ccccCCc
Q 010111 200 YLVVDETDRLLREA-YQA---------------WLPTVLQLTRSDN---------------------------ENRFSDA 236 (518)
Q Consensus 200 ~vViDEah~~~~~~-~~~---------------~~~~i~~~~~~~~---------------------------~~~~~~~ 236 (518)
++|+||+|+++-+. ..+ ....+...+.... .+.+...
T Consensus 179 ~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~ 258 (745)
T TIGR00963 179 FAIIDEVDSILIDEARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLE 258 (745)
T ss_pred eeEeecHHHHhHHhhhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChh
Confidence 99999999886421 110 0111111111000 0000000
Q ss_pred cccccc-ccccchhh--------------------hcccc---ccCCC--------------C----------------C
Q 010111 237 STFLPS-AFGSLKTI--------------------RRCGV---ERGFK--------------D----------------K 262 (518)
Q Consensus 237 ~~~~~~-~~~~~~~~--------------------~~~~~---~~~~~--------------~----------------~ 262 (518)
...+.+ ....+... ..++. .+.+. - .
T Consensus 259 ~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr 338 (745)
T TIGR00963 259 NSPLIHYINNALKAKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFR 338 (745)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHh
Confidence 000000 00000000 00000 00000 0 0
Q ss_pred CCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHH--hcCCCcEEEEcC
Q 010111 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ--SLGEEKCIVFTS 340 (518)
Q Consensus 263 ~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~--~~~~~~~lVf~~ 340 (518)
.|+ +...||+|......++...+-...+.+.+.... ..... .-.+......|...+...+. ...+.++||||+
T Consensus 339 ~Y~--kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~--~R~d~-~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~ 413 (745)
T TIGR00963 339 LYE--KLSGMTGTAKTEEEEFEKIYNLEVVVVPTNRPV--IRKDL-SDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTT 413 (745)
T ss_pred hCc--hhhccCCCcHHHHHHHHHHhCCCEEEeCCCCCe--eeeeC-CCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 011 346788887665555555444443333332211 11111 11223334556666666553 346789999999
Q ss_pred ChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCC-------CCEEEEcCCC
Q 010111 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG-------VNNVVNYDKP 413 (518)
Q Consensus 341 s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~-------v~~VI~~~~p 413 (518)
|+..++.+++.|...+ +++..+|+. +.+|+..+..|+.+...|+|||++++||+||+. ..+||+++.|
T Consensus 414 si~~se~ls~~L~~~g---i~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p 488 (745)
T TIGR00963 414 SVEKSELLSNLLKERG---IPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERH 488 (745)
T ss_pred cHHHHHHHHHHHHHcC---CCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCC
Confidence 9999999999999876 889999998 778999999999999999999999999999997 4599999999
Q ss_pred CCccchhhhhhhcccCCCCCcEEEEeecchhHHH----HHHHHHHHhh
Q 010111 414 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLV----KRFKKLLQKA 457 (518)
Q Consensus 414 ~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~----~~~~~~l~~~ 457 (518)
.|...|.|++||+||.|.+|.+..|++.+|.-+- +++.++++..
T Consensus 489 ~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l~~~~~~~~~~~~~~~~ 536 (745)
T TIGR00963 489 ESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLMRIFGGDRLEGLMRRL 536 (745)
T ss_pred CcHHHHHHHhccccCCCCCcceEEEEeccHHHHHhhhhHHHHHHHHHc
Confidence 9999999999999999999999999998875432 3345555443
No 70
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=8.3e-37 Score=305.01 Aligned_cols=340 Identities=24% Similarity=0.274 Sum_probs=233.1
Q ss_pred CCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHH
Q 010111 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (518)
Q Consensus 35 l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La 114 (518)
+++.......--....+++||.+..+ .++ |+|+||++|||+|||++++..+++++.+.+ ..++++++|++.|+
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq----~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p--~~KiVF~aP~~pLv 119 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQ----PAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP--KGKVVFLAPTRPLV 119 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhH----Hhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC--cceEEEeeCCchHH
Confidence 44444433333345589999988643 334 999999999999999999999999998864 46899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCC
Q 010111 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (518)
Q Consensus 115 ~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 194 (518)
.|+...+..++.. ..+....|+........ .+....+|+|+||+.+.+.|.+.....
T Consensus 120 ~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~---------------------~i~~s~~vff~TpQil~ndL~~~~~~~ 176 (746)
T KOG0354|consen 120 NQQIACFSIYLIP--YSVTGQLGDTVPRSNRG---------------------EIVASKRVFFRTPQILENDLKSGLHDE 176 (746)
T ss_pred HHHHHHHhhccCc--ccceeeccCccCCCchh---------------------hhhcccceEEeChHhhhhhcccccccc
Confidence 9998888887765 45555555533222111 234567999999999999998854445
Q ss_pred CCcccEEEEechhHhhhHhHHhHHH-HHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEe
Q 010111 195 LEHLCYLVVDETDRLLREAYQAWLP-TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (518)
Q Consensus 195 ~~~~~~vViDEah~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (518)
++.|.++||||||+-....-+..+. .++..-. ...|.+++|
T Consensus 177 ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~--------------------------------------~~~qILgLT 218 (746)
T KOG0354|consen 177 LSDFSLIVFDECHRTSKNHPYNNIMREYLDLKN--------------------------------------QGNQILGLT 218 (746)
T ss_pred cceEEEEEEcccccccccccHHHHHHHHHHhhh--------------------------------------ccccEEEEe
Confidence 7899999999999886654444333 4443321 111778999
Q ss_pred EeecCChhhhhhc----------------------------------------------------------cCC---CCe
Q 010111 274 ATLTQDPNKLAQL----------------------------------------------------------DLH---HPL 292 (518)
Q Consensus 274 aT~~~~~~~~~~~----------------------------------------------------------~~~---~~~ 292 (518)
||+..+....... .+. ...
T Consensus 219 ASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~ 298 (746)
T KOG0354|consen 219 ASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDKS 298 (746)
T ss_pred cCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcccccccc
Confidence 9987663221110 000 000
Q ss_pred -E--E---eeCC-ccccCccc----------------------cce----------------------------------
Q 010111 293 -F--L---TTGE-TRYKLPER----------------------LES---------------------------------- 309 (518)
Q Consensus 293 -~--~---~~~~-~~~~~~~~----------------------~~~---------------------------------- 309 (518)
. . .... .....+.. +..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~ 378 (746)
T KOG0354|consen 299 TSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTE 378 (746)
T ss_pred ccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHH
Confidence 0 0 0000 00000000 000
Q ss_pred -------eeee-cCCCCcHHHHHHHHH----hcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccc--------cC
Q 010111 310 -------YKLI-CESKLKPLYLVALLQ----SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG--------LQ 369 (518)
Q Consensus 310 -------~~~~-~~~~~k~~~l~~~l~----~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg--------~~ 369 (518)
.... .....|...+...+. ..+..++||||.++..|..+.++|.+....+++...+.| +|
T Consensus 379 ~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gm 458 (746)
T KOG0354|consen 379 NMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGM 458 (746)
T ss_pred HHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecccccccccc
Confidence 0000 001222333333332 123469999999999999999999865444455554444 89
Q ss_pred ChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchh
Q 010111 370 RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (518)
Q Consensus 370 ~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~ 444 (518)
++.+..++++.|++|+++|||||+++++|+||+.|+.||-||...++...+||.|| ||+ +.|.++.+++..+.
T Consensus 459 tqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 459 TQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEV 531 (746)
T ss_pred CHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhH
Confidence 99999999999999999999999999999999999999999999999999999999 999 78999988885444
No 71
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=2.8e-36 Score=317.82 Aligned_cols=344 Identities=24% Similarity=0.321 Sum_probs=258.5
Q ss_pred CCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHH
Q 010111 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (518)
Q Consensus 35 l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La 114 (518)
.+..+..++.+.|...|+.+|.+|+..+. .|+|++|..+||||||.+|++|+++.+.+++ ..++|+|.||++||
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~----~G~~vvVtTgTgSGKTe~FllPIld~~l~~~--~a~AL~lYPtnALa 128 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIR----EGRNVVVTTGTGSGKTESFLLPILDHLLRDP--SARALLLYPTNALA 128 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHH----CCCCEEEECCCCCchhHHHHHHHHHHHhhCc--CccEEEEechhhhH
Confidence 45667889999999999999999988776 4899999999999999999999999998874 33899999999999
Q ss_pred HHHHHHHHHhccccC--ceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCC
Q 010111 115 LQVKDVFAAIAPAVG--LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (518)
Q Consensus 115 ~Q~~~~~~~~~~~~~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~ 192 (518)
+.+.+.++++....+ +.+..+.|++...+.. .....+++|+++||++|..++.+...
T Consensus 129 ~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~---------------------~~~~~pp~IllTNpdMLh~~llr~~~ 187 (851)
T COG1205 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERR---------------------AIIRNPPDILLTNPDMLHYLLLRNHD 187 (851)
T ss_pred hhHHHHHHHHHHhCCCcceeeeecCCCChHHHH---------------------HHHhCCCCEEEeCHHHHHHHhccCcc
Confidence 999999999988777 7888888888766552 23457789999999999886654332
Q ss_pred ---CCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceee
Q 010111 193 ---FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269 (518)
Q Consensus 193 ---~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (518)
+.++++++||+||+|.. ...++..+-.++..+..... ......|+
T Consensus 188 ~~~~~~~~Lk~lVvDElHtY-rGv~GS~vA~llRRL~~~~~-------------------------------~~~~~~q~ 235 (851)
T COG1205 188 AWLWLLRNLKYLVVDELHTY-RGVQGSEVALLLRRLLRRLR-------------------------------RYGSPLQI 235 (851)
T ss_pred hHHHHHhcCcEEEEecceec-cccchhHHHHHHHHHHHHHh-------------------------------ccCCCceE
Confidence 24678999999999955 44556655555554432110 00023488
Q ss_pred EEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecC---------CCCcHHHHHHHHHhc--CCCcEEEE
Q 010111 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE---------SKLKPLYLVALLQSL--GEEKCIVF 338 (518)
Q Consensus 270 i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~k~~~l~~~l~~~--~~~~~lVf 338 (518)
+..|||..+.... ............+... ..+.....+....+ ...+...+..+.... .+-++|+|
T Consensus 236 i~~SAT~~np~e~-~~~l~~~~f~~~v~~~--g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F 312 (851)
T COG1205 236 ICTSATLANPGEF-AEELFGRDFEVPVDED--GSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVF 312 (851)
T ss_pred EEEeccccChHHH-HHHhcCCcceeeccCC--CCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEE
Confidence 9999999655444 4444443333322222 22333333333322 123333333333322 46799999
Q ss_pred cCChhhHHHHH----HHHhhcC-CCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCC
Q 010111 339 TSSVESTHRLC----TLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 413 (518)
Q Consensus 339 ~~s~~~~~~l~----~~L~~~~-~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p 413 (518)
+.++..++.++ +.+...+ .....+..++|++...+|..++..|+.|+..++++|++++-|||+-+++.||.+..|
T Consensus 313 ~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P 392 (851)
T COG1205 313 FRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYP 392 (851)
T ss_pred EehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCC
Confidence 99999999997 3333323 344678999999999999999999999999999999999999999999999999999
Q ss_pred C-CccchhhhhhhcccCCCCCcEEEEee
Q 010111 414 A-YIKTYIHRAGRTARAGQLGRCFTLLH 440 (518)
Q Consensus 414 ~-s~~~~~Qr~GR~gR~g~~g~~~~~~~ 440 (518)
. +..++.||.||+||.++.+..+....
T Consensus 393 ~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 393 GVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred CchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 9 89999999999999997776666665
No 72
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=4e-35 Score=316.15 Aligned_cols=324 Identities=23% Similarity=0.285 Sum_probs=229.7
Q ss_pred CCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccc
Q 010111 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (518)
Q Consensus 48 ~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~ 127 (518)
..++++||.+++..++. +|+++++|||+|||+++++++...+.. .+.++||++||++|+.|+.+.+++++..
T Consensus 13 ~~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~~---~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 13 TIEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLHK---KGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred cCCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHHh---CCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 34889999998766553 499999999999999999988887742 3458999999999999999999998655
Q ss_pred cCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechh
Q 010111 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (518)
Q Consensus 128 ~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah 207 (518)
.+.++..+.|+.+..... .+...++|+|+||+.+.+.+.. +.+.+.++++||+||||
T Consensus 85 ~~~~v~~~~g~~~~~~r~----------------------~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 85 PEEKIVVFTGEVSPEKRA----------------------ELWEKAKVIVATPQVIENDLIA-GRISLEDVSLLIFDEAH 141 (773)
T ss_pred CCceEEEEeCCCCHHHHH----------------------HHHhCCCEEEECHHHHHHHHHc-CCCChhhCcEEEEECCc
Confidence 456788888887655432 2234579999999999887766 45678899999999999
Q ss_pred HhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhh--
Q 010111 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-- 285 (518)
Q Consensus 208 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~-- 285 (518)
++........+...+.... .....+++|||+......+..
T Consensus 142 ~~~~~~~~~~i~~~~~~~~--------------------------------------~~~~il~lTaTP~~~~~~i~~~~ 183 (773)
T PRK13766 142 RAVGNYAYVYIAERYHEDA--------------------------------------KNPLVLGLTASPGSDEEKIKEVC 183 (773)
T ss_pred cccccccHHHHHHHHHhcC--------------------------------------CCCEEEEEEcCCCCCHHHHHHHH
Confidence 9865433222222111100 111467888887433211111
Q ss_pred -cc------------------CCCCeEEe--eCCc------------------------ccc--Ccc------------c
Q 010111 286 -LD------------------LHHPLFLT--TGET------------------------RYK--LPE------------R 306 (518)
Q Consensus 286 -~~------------------~~~~~~~~--~~~~------------------------~~~--~~~------------~ 306 (518)
.. +..+.... .... ... ... .
T Consensus 184 ~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~ 263 (773)
T PRK13766 184 ENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKK 263 (773)
T ss_pred HhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHH
Confidence 00 00000000 0000 000 000 0
Q ss_pred c------------------------------------------------------------------------ceeeeec
Q 010111 307 L------------------------------------------------------------------------ESYKLIC 314 (518)
Q Consensus 307 ~------------------------------------------------------------------------~~~~~~~ 314 (518)
+ .......
T Consensus 264 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 343 (773)
T PRK13766 264 LQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELD 343 (773)
T ss_pred HHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcc
Confidence 0 0000001
Q ss_pred CCCCcHHHHHHHHHh----cCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEcccc--------CChHHHHHHHHHHh
Q 010111 315 ESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL--------QRQSVRSKTLKAFR 382 (518)
Q Consensus 315 ~~~~k~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~--------~~~~~r~~~~~~f~ 382 (518)
....|...|..+++. ..+.++||||+++++|+.+++.|...+ +.+..+||. +++.+|..++++|+
T Consensus 344 ~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~---~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~ 420 (773)
T PRK13766 344 IEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEG---IKAVRFVGQASKDGDKGMSQKEQIEILDKFR 420 (773)
T ss_pred cCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCC---CceEEEEccccccccCCCCHHHHHHHHHHHH
Confidence 123455556666654 467899999999999999999997655 677778775 99999999999999
Q ss_pred cCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchh
Q 010111 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (518)
Q Consensus 383 ~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~ 444 (518)
+|+.++||||+++++|+|+|++++||+||+|++...|+||+||+||.| .|.+++++..+..
T Consensus 421 ~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t~ 481 (773)
T PRK13766 421 AGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGTR 481 (773)
T ss_pred cCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCCh
Confidence 999999999999999999999999999999999999999999999986 5888888876543
No 73
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.2e-35 Score=303.04 Aligned_cols=320 Identities=18% Similarity=0.182 Sum_probs=218.8
Q ss_pred ccchhhHHHHHHhhCCCCCC--CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccc
Q 010111 50 SLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~--~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~ 127 (518)
.|+|||.+|+...+. .+ +..++++|||+|||++.+..+. .+ +.++|||||+..|+.||.++|.+++..
T Consensus 255 ~LRpYQ~eAl~~~~~---~gr~r~GIIvLPtGaGKTlvai~aa~-~l------~k~tLILvps~~Lv~QW~~ef~~~~~l 324 (732)
T TIGR00603 255 QIRPYQEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVTAAC-TV------KKSCLVLCTSAVSVEQWKQQFKMWSTI 324 (732)
T ss_pred CcCHHHHHHHHHHHh---cCCCCCcEEEeCCCCChHHHHHHHHH-Hh------CCCEEEEeCcHHHHHHHHHHHHHhcCC
Confidence 699999999887764 23 5789999999999999776543 32 236999999999999999999998755
Q ss_pred cCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCC-------CCCCCcccE
Q 010111 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-------GFTLEHLCY 200 (518)
Q Consensus 128 ~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-------~~~~~~~~~ 200 (518)
....+..++|+.... .....+|+|+|++++.....+.. .+.-..+++
T Consensus 325 ~~~~I~~~tg~~k~~--------------------------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gL 378 (732)
T TIGR00603 325 DDSQICRFTSDAKER--------------------------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGL 378 (732)
T ss_pred CCceEEEEecCcccc--------------------------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCE
Confidence 456666666653210 11236899999998754322210 122346889
Q ss_pred EEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCCh
Q 010111 201 LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 280 (518)
Q Consensus 201 vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~ 280 (518)
||+||||++....|...+. .+.. ...+++|||+...-
T Consensus 379 II~DEvH~lpA~~fr~il~----~l~a---------------------------------------~~RLGLTATP~ReD 415 (732)
T TIGR00603 379 ILLDEVHVVPAAMFRRVLT----IVQA---------------------------------------HCKLGLTATLVRED 415 (732)
T ss_pred EEEEccccccHHHHHHHHH----hcCc---------------------------------------CcEEEEeecCcccC
Confidence 9999999997665554332 2211 03588999986443
Q ss_pred hhhhh-ccCCCCeEEeeCCccccCcccccee---ee-----------------------ecCCCCcHHHHHHHHHhc--C
Q 010111 281 NKLAQ-LDLHHPLFLTTGETRYKLPERLESY---KL-----------------------ICESKLKPLYLVALLQSL--G 331 (518)
Q Consensus 281 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----------------------~~~~~~k~~~l~~~l~~~--~ 331 (518)
..... ..+..|..+............+..+ .+ ......|...+..+++.+ .
T Consensus 416 ~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~ 495 (732)
T TIGR00603 416 DKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQR 495 (732)
T ss_pred CchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhc
Confidence 22211 1222344333321111101111100 00 111223444555555543 5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcC-CceEEEEcCccccCCCCCCCCEEEEc
Q 010111 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVLVSSDAMTRGMDVEGVNNVVNY 410 (518)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g-~~~vLvaT~~~~~GiDip~v~~VI~~ 410 (518)
+.++||||.++..++.+++.|. +..+||++++.+|..+++.|++| .+++||+|+++++|||+|++++||++
T Consensus 496 g~kiLVF~~~~~~l~~~a~~L~--------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~ 567 (732)
T TIGR00603 496 GDKIIVFSDNVFALKEYAIKLG--------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQI 567 (732)
T ss_pred CCeEEEEeCCHHHHHHHHHHcC--------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEe
Confidence 7799999999999999888772 34589999999999999999975 78999999999999999999999999
Q ss_pred CCC-CCccchhhhhhhcccCCCCCcE-------EEEeecch--hHHHHHHHHHHHh
Q 010111 411 DKP-AYIKTYIHRAGRTARAGQLGRC-------FTLLHKDE--VCLVKRFKKLLQK 456 (518)
Q Consensus 411 ~~p-~s~~~~~Qr~GR~gR~g~~g~~-------~~~~~~~e--~~~~~~~~~~l~~ 456 (518)
+.| .|...|+||+||++|.+..|.+ +.|++++. ..+..+-+++|.+
T Consensus 568 s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~ 623 (732)
T TIGR00603 568 SSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVD 623 (732)
T ss_pred CCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHH
Confidence 987 5999999999999999866654 77777644 4445555566654
No 74
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=2.8e-34 Score=279.32 Aligned_cols=312 Identities=17% Similarity=0.172 Sum_probs=195.8
Q ss_pred hhHHHHHHhhCCCCCCC--CEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcccc---
Q 010111 54 VQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV--- 128 (518)
Q Consensus 54 ~Q~~a~~~~~~~~~~~~--~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~--- 128 (518)
+|.++++.+.+ +. +++++||||||||.+|++|++.. ..+++|++|+++|++|+++.++.++...
T Consensus 1 hQ~~~~~~~~~----~~~~~~~i~apTGsGKT~~~~~~~l~~-------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQS----KDADIIFNTAPTGAGKTLAWLTPLLHG-------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHc----CCCCEEEEECCCCCCHHHHHHHHHHHc-------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 58999888765 43 47899999999999999998841 2368999999999999999998886432
Q ss_pred -CceEEEeecCCchHHHHHHhh-cCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcC---CCC----CCCccc
Q 010111 129 -GLSVGLAVGQSSIADEISELI-KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT---RGF----TLEHLC 199 (518)
Q Consensus 129 -~~~v~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~---~~~----~~~~~~ 199 (518)
+..+..+.|......+ .+. .......+...............++|+++||+.|..++... +.. .+.+++
T Consensus 70 ~~~~v~~~~g~~~~d~~--~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~ 147 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIK--EYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFS 147 (357)
T ss_pred CCceEEEecCCchHHHH--HhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCC
Confidence 4566666665332211 110 00000000000000001112346899999999997665431 111 257899
Q ss_pred EEEEechhHhhhHhHHhH-----HHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeE
Q 010111 200 YLVVDETDRLLREAYQAW-----LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (518)
Q Consensus 200 ~vViDEah~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (518)
+||+||+|.+........ ...++.... ...+.+++||
T Consensus 148 ~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~--------------------------------------~~~~~i~lSA 189 (357)
T TIGR03158 148 TVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFE--------------------------------------CRRKFVFLSA 189 (357)
T ss_pred EEEEecccccCcccchhhhhhhHHHHHHHhhh--------------------------------------cCCcEEEEec
Confidence 999999998753322111 111111110 1127899999
Q ss_pred eecCChhhhhhcc--CCCCeEEeeCCcc-----------------ccCccccceeeeecCCCCcHHHHHHHHH-------
Q 010111 275 TLTQDPNKLAQLD--LHHPLFLTTGETR-----------------YKLPERLESYKLICESKLKPLYLVALLQ------- 328 (518)
Q Consensus 275 T~~~~~~~~~~~~--~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~k~~~l~~~l~------- 328 (518)
|++.......... ...+.....+..- ......+.+.... ....+...+..+++
T Consensus 190 T~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~ 268 (357)
T TIGR03158 190 TPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFR 268 (357)
T ss_pred CCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHh
Confidence 9977655544432 3333322222100 0000123332222 23333333322222
Q ss_pred hcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEE
Q 010111 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 408 (518)
Q Consensus 329 ~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI 408 (518)
...++++||||+|+..++.+++.|+..+ .++.+..+||.+++.+|.+. ++.+|||||+++++|||+|.+ +||
T Consensus 269 ~~~~~k~LIf~nt~~~~~~l~~~L~~~~-~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi 340 (357)
T TIGR03158 269 QLPGERGAIILDSLDEVNRLSDLLQQQG-LGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI 340 (357)
T ss_pred ccCCCeEEEEECCHHHHHHHHHHHhhhC-CCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE
Confidence 2356799999999999999999998753 23578899999999988654 478999999999999999976 555
Q ss_pred EcCCCCCccchhhhhhhcc
Q 010111 409 NYDKPAYIKTYIHRAGRTA 427 (518)
Q Consensus 409 ~~~~p~s~~~~~Qr~GR~g 427 (518)
++ |.+.+.|+||+||+|
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 45 889999999999997
No 75
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.4e-34 Score=290.60 Aligned_cols=339 Identities=20% Similarity=0.261 Sum_probs=243.9
Q ss_pred HhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcc------cCCccEEEEcCcHHHHHHH
Q 010111 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA------VRCLRALVVLPTRDLALQV 117 (518)
Q Consensus 44 ~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~------~~~~~~lil~Pt~~La~Q~ 117 (518)
.-++|.++..+|.+++|.+.. .+.|+|||||||+|||-+|++.+++.+.+.. ....+++|++|+++||..+
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~---SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em 180 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYK---SNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEM 180 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhc---CCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHH
Confidence 346788999999999987765 6799999999999999999999999988621 2467899999999999999
Q ss_pred HHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCC---CCC
Q 010111 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR---GFT 194 (518)
Q Consensus 118 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~---~~~ 194 (518)
.+.+.+-+..+|+.|.-++|+....+.. -..++|+|+||+.. +.+.+.. ...
T Consensus 181 ~~~~~kkl~~~gi~v~ELTGD~ql~~te------------------------i~~tqiiVTTPEKw-DvvTRk~~~d~~l 235 (1230)
T KOG0952|consen 181 VDKFSKKLAPLGISVRELTGDTQLTKTE------------------------IADTQIIVTTPEKW-DVVTRKSVGDSAL 235 (1230)
T ss_pred HHHHhhhcccccceEEEecCcchhhHHH------------------------HHhcCEEEecccce-eeeeeeeccchhh
Confidence 9999888888899999999998765542 23579999999995 5554422 124
Q ss_pred CCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeE
Q 010111 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (518)
Q Consensus 195 ~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (518)
++.+++||+||+| ++...+++.++.|+..+...-. .....++++.+||
T Consensus 236 ~~~V~LviIDEVH-lLhd~RGpvlEtiVaRtlr~ve-------------------------------ssqs~IRivgLSA 283 (1230)
T KOG0952|consen 236 FSLVRLVIIDEVH-LLHDDRGPVLETIVARTLRLVE-------------------------------SSQSMIRIVGLSA 283 (1230)
T ss_pred hhheeeEEeeeeh-hhcCcccchHHHHHHHHHHHHH-------------------------------hhhhheEEEEeec
Confidence 6789999999999 6677888999998887653211 0112357899999
Q ss_pred eecCChhhhhhccCCCCe-EEeeCCccccCccccceeeeecCCC---CcHHHHH-----HHHH-hcCCCcEEEEcCChhh
Q 010111 275 TLTQDPNKLAQLDLHHPL-FLTTGETRYKLPERLESYKLICESK---LKPLYLV-----ALLQ-SLGEEKCIVFTSSVES 344 (518)
Q Consensus 275 T~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~-----~~l~-~~~~~~~lVf~~s~~~ 344 (518)
|+|+-.+...+...+.+. ++..... ..|-.+.+..+-.... .+..... +..+ -..+.+++|||.++..
T Consensus 284 TlPN~eDvA~fL~vn~~~glfsFd~~--yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~ 361 (1230)
T KOG0952|consen 284 TLPNYEDVARFLRVNPYAGLFSFDQR--YRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNE 361 (1230)
T ss_pred cCCCHHHHHHHhcCCCccceeeeccc--ccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChH
Confidence 998655443333332111 2222222 2233333332222211 2222111 1122 1247899999999999
Q ss_pred HHHHHHHHhhcCC-----------C---------ceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCC
Q 010111 345 THRLCTLLNHFGE-----------L---------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 404 (518)
Q Consensus 345 ~~~l~~~L~~~~~-----------~---------~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v 404 (518)
+.+.++.|.+... . ....+.+|+||...+|..+.+.|..|.++||+||..++.|+|+|+-
T Consensus 362 Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~ 441 (1230)
T KOG0952|consen 362 TIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAY 441 (1230)
T ss_pred HHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcce
Confidence 9999988865321 0 1357899999999999999999999999999999999999999964
Q ss_pred CEEE----EcCCCC------CccchhhhhhhcccC--CCCCcEEEEeecchh
Q 010111 405 NNVV----NYDKPA------YIKTYIHRAGRTARA--GQLGRCFTLLHKDEV 444 (518)
Q Consensus 405 ~~VI----~~~~p~------s~~~~~Qr~GR~gR~--g~~g~~~~~~~~~e~ 444 (518)
.++| .||... ...+.+|..|||||- +..|.++++.+.+-.
T Consensus 442 aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl 493 (1230)
T KOG0952|consen 442 AVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKL 493 (1230)
T ss_pred EEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHH
Confidence 4444 233332 244679999999994 467888877776555
No 76
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=2.5e-33 Score=276.12 Aligned_cols=340 Identities=19% Similarity=0.230 Sum_probs=248.9
Q ss_pred HHHHHHHHhCCCCccchhhHHHHHHhhCCCCCC--CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHH
Q 010111 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (518)
Q Consensus 37 ~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~--~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La 114 (518)
..+.+.+..+.| +||..|.+++.+|...+.+. .+-|+++..|||||++++++++..+.. |.++..++||--||
T Consensus 250 ~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~----G~Q~ALMAPTEILA 324 (677)
T COG1200 250 ELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA----GYQAALMAPTEILA 324 (677)
T ss_pred HHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc----CCeeEEeccHHHHH
Confidence 345566688999 99999999999998877665 466999999999999999999988765 45899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCC
Q 010111 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (518)
Q Consensus 115 ~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 194 (518)
+|.++.+.++++..|++|..++|......+...+. +......+|+|+|..-+. ....
T Consensus 325 ~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~-----------------~l~~G~~~ivVGTHALiQ------d~V~ 381 (677)
T COG1200 325 EQHYESLRKWLEPLGIRVALLTGSLKGKARKEILE-----------------QLASGEIDIVVGTHALIQ------DKVE 381 (677)
T ss_pred HHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHH-----------------HHhCCCCCEEEEcchhhh------ccee
Confidence 99999999999999999999999987666543322 233345899999965543 2567
Q ss_pred CCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeE
Q 010111 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (518)
Q Consensus 195 ~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (518)
+.++.++|+||-|++.-..+... .+.-.. ....++|||
T Consensus 382 F~~LgLVIiDEQHRFGV~QR~~L----~~KG~~--------------------------------------~Ph~LvMTA 419 (677)
T COG1200 382 FHNLGLVIIDEQHRFGVHQRLAL----REKGEQ--------------------------------------NPHVLVMTA 419 (677)
T ss_pred ecceeEEEEeccccccHHHHHHH----HHhCCC--------------------------------------CCcEEEEeC
Confidence 88899999999999855443211 111000 115689999
Q ss_pred eecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHH-hc-CCCcEEEEcCChh--------h
Q 010111 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-SL-GEEKCIVFTSSVE--------S 344 (518)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-~~-~~~~~lVf~~s~~--------~ 344 (518)
|+-+..-.+......+..++. ..|..-......+-...+...++..+. .. .+.++-+.|+-++ .
T Consensus 420 TPIPRTLAlt~fgDldvS~Id------ElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~ 493 (677)
T COG1200 420 TPIPRTLALTAFGDLDVSIID------ELPPGRKPITTVVIPHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQA 493 (677)
T ss_pred CCchHHHHHHHhccccchhhc------cCCCCCCceEEEEeccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhh
Confidence 976655444433222211111 122221212222222344444444443 22 5678999998654 4
Q ss_pred HHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCC-ccchhhhh
Q 010111 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY-IKTYIHRA 423 (518)
Q Consensus 345 ~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s-~~~~~Qr~ 423 (518)
+..+++.|... ..++.+..+||.|+..++++++++|++|+++|||||.+.+.|||+|+.++.|+.+.-+- .+++.|-.
T Consensus 494 a~~~~~~L~~~-~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLR 572 (677)
T COG1200 494 AEELYEELKSF-LPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLR 572 (677)
T ss_pred HHHHHHHHHHH-cccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhc
Confidence 55666777633 34578999999999999999999999999999999999999999999999999887653 67889999
Q ss_pred hhcccCCCCCcEEEEeecch-hHHHHHHHHH
Q 010111 424 GRTARAGQLGRCFTLLHKDE-VCLVKRFKKL 453 (518)
Q Consensus 424 GR~gR~g~~g~~~~~~~~~e-~~~~~~~~~~ 453 (518)
||+||.+..+.|+.++.+.. ...-++++-+
T Consensus 573 GRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im 603 (677)
T COG1200 573 GRVGRGDLQSYCVLLYKPPLSEVAKQRLKIM 603 (677)
T ss_pred cccCCCCcceEEEEEeCCCCChhHHHHHHHH
Confidence 99999999999999998766 3333445444
No 77
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.6e-33 Score=294.64 Aligned_cols=339 Identities=22% Similarity=0.298 Sum_probs=251.0
Q ss_pred HHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHH
Q 010111 38 RLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (518)
Q Consensus 38 ~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~ 117 (518)
...-....+|...+++-|.+|+..++ .|+|+++.+|||.||+++|.+|++- .+.-.|||.|..+|.+.+
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l----~Gkd~fvlmpTG~GKSLCYQlPA~l-------~~gitvVISPL~SLm~DQ 320 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATL----SGKDCFVLMPTGGGKSLCYQLPALL-------LGGVTVVISPLISLMQDQ 320 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHH----cCCceEEEeecCCceeeEeeccccc-------cCCceEEeccHHHHHHHH
Confidence 33334445899999999999987666 5999999999999999999999882 223799999999997765
Q ss_pred HHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcC---CCcEEEeCChHHHHhHhcC-CCC
Q 010111 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS---AVDILVATPGRLMDHINAT-RGF 193 (518)
Q Consensus 118 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Iiv~Tp~~l~~~l~~~-~~~ 193 (518)
...+.. .++....+.++.....+...+ +.+.. ..+|++.||+.+...-.-. ...
T Consensus 321 v~~L~~----~~I~a~~L~s~q~~~~~~~i~------------------q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~ 378 (941)
T KOG0351|consen 321 VTHLSK----KGIPACFLSSIQTAAERLAIL------------------QKLANGNPIIKILYVTPEKVVASEGLLESLA 378 (941)
T ss_pred HHhhhh----cCcceeeccccccHHHHHHHH------------------HHHhCCCCeEEEEEeCHHHhhcccchhhHHH
Confidence 555433 378899999988876553322 22333 4789999999875432211 111
Q ss_pred CCCc---ccEEEEechhHhhhHhH--HhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCcee
Q 010111 194 TLEH---LCYLVVDETDRLLREAY--QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (518)
Q Consensus 194 ~~~~---~~~vViDEah~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (518)
.+.. +.++||||||+...+++ .+....+...... ++.++
T Consensus 379 ~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~------------------------------------~~~vP 422 (941)
T KOG0351|consen 379 DLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIR------------------------------------FPGVP 422 (941)
T ss_pred hccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhh------------------------------------CCCCC
Confidence 2333 88999999999987753 3333222222110 12347
Q ss_pred eEEEeEeecCChhh--hhhccCCCCeEEeeCCccccCccccceeeeecCC-CCcHH-HHHHHHHhcCCCcEEEEcCChhh
Q 010111 269 KMVLSATLTQDPNK--LAQLDLHHPLFLTTGETRYKLPERLESYKLICES-KLKPL-YLVALLQSLGEEKCIVFTSSVES 344 (518)
Q Consensus 269 ~i~~SaT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~-~l~~~l~~~~~~~~lVf~~s~~~ 344 (518)
++.+|||.+..+.. +....+.++.++...... .++... +.... ..... .+...-.......+||||.++.+
T Consensus 423 ~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR----~NL~ye-V~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ 497 (941)
T KOG0351|consen 423 FIALTATATERVREDVIRSLGLRNPELFKSSFNR----PNLKYE-VSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKE 497 (941)
T ss_pred eEEeehhccHHHHHHHHHHhCCCCcceecccCCC----CCceEE-EEeccCccchHHHHHHhhhcCCCCCeEEEeCCcch
Confidence 89999999877654 334456677655444322 222222 22222 22222 22333334567899999999999
Q ss_pred HHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhh
Q 010111 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAG 424 (518)
Q Consensus 345 ~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~G 424 (518)
|+.+...|+..+ +....||++|+..+|..+.+.|..++++|+|||=++++|||.|+|+.||+|.+|+|.+.|.|-+|
T Consensus 498 ce~vs~~L~~~~---~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~G 574 (941)
T KOG0351|consen 498 CEQVSAVLRSLG---KSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAG 574 (941)
T ss_pred HHHHHHHHHHhc---hhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhcc
Confidence 999999999877 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCcEEEEeecchhHHHHHHHHHHHh
Q 010111 425 RTARAGQLGRCFTLLHKDEVCLVKRFKKLLQK 456 (518)
Q Consensus 425 R~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~ 456 (518)
||||.|....|++|+...|. .++..++..
T Consensus 575 RAGRDG~~s~C~l~y~~~D~---~~l~~ll~s 603 (941)
T KOG0351|consen 575 RAGRDGLPSSCVLLYGYADI---SELRRLLTS 603 (941)
T ss_pred ccCcCCCcceeEEecchhHH---HHHHHHHHc
Confidence 99999999999999999988 566666554
No 78
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.8e-33 Score=257.10 Aligned_cols=342 Identities=19% Similarity=0.255 Sum_probs=239.3
Q ss_pred HHHHHHHh-CCCCcc-chhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHH
Q 010111 38 RLKVALQN-MGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (518)
Q Consensus 38 ~~~~~l~~-~g~~~~-~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~ 115 (518)
.+.++|++ +|+.++ ++.|.+|+..++. ..+|+.+++|||+||+++|.+|.+-. .+ ..||+.|..+|..
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK---~k~DVyVsMPTGaGKSLCyQLPaL~~------~g-ITIV~SPLiALIk 75 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVK---RKCDVYVSMPTGAGKSLCYQLPALVH------GG-ITIVISPLIALIK 75 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHh---ccCcEEEeccCCCchhhhhhchHHHh------CC-eEEEehHHHHHHH
Confidence 46677776 588776 4899999887776 57999999999999999999999842 23 7899999999988
Q ss_pred HHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHH-----HhHhcC
Q 010111 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM-----DHINAT 190 (518)
Q Consensus 116 Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~-----~~l~~~ 190 (518)
.+.+.+.++ .+++..+.+..+..++.+-+-+ ......+..+++.||+.-. .+|..
T Consensus 76 DQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~D---------------L~~ekp~~K~LYITPE~AAt~~FQ~lLn~- 135 (641)
T KOG0352|consen 76 DQIDHLKRL----KVPCESLNSKLSTVERSRIMGD---------------LAKEKPTIKMLYITPEGAATDGFQKLLNG- 135 (641)
T ss_pred HHHHHHHhc----CCchhHhcchhhHHHHHHHHHH---------------HHhcCCceeEEEEchhhhhhhhHHHHHHH-
Confidence 877877776 4555555555554444322111 1223345679999998632 22222
Q ss_pred CCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeE
Q 010111 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (518)
Q Consensus 191 ~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (518)
-.+-..++++|+||||++..+|+. |.|.++.. ..++ ..++...-+
T Consensus 136 -L~~r~~L~Y~vVDEAHCVSQWGHD-----------------------FRPDYL~L-G~LR----------S~~~~vpwv 180 (641)
T KOG0352|consen 136 -LANRDVLRYIVVDEAHCVSQWGHD-----------------------FRPDYLTL-GSLR----------SVCPGVPWV 180 (641)
T ss_pred -HhhhceeeeEEechhhhHhhhccc-----------------------cCcchhhh-hhHH----------hhCCCCceE
Confidence 112345889999999999766542 22222110 0000 112444678
Q ss_pred EEeEeecCChhhhh--hccCCCCeEEe-eCCccccCccccceeeeecCCCCcHHHHHHHHHhc-------------CCCc
Q 010111 271 VLSATLTQDPNKLA--QLDLHHPLFLT-TGETRYKLPERLESYKLICESKLKPLYLVALLQSL-------------GEEK 334 (518)
Q Consensus 271 ~~SaT~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-------------~~~~ 334 (518)
.++||.+..+.+-. ...+.+|+.+- +..-..++-..+..-..+ .+-...|..+.... ..+.
T Consensus 181 ALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I---~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GC 257 (641)
T KOG0352|consen 181 ALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFI---TDCLTVLADFSSSNLGKHEKASQNKKTFTGC 257 (641)
T ss_pred EeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHh---hhHhHhHHHHHHHhcCChhhhhcCCCCcCcc
Confidence 99999988876643 34556665431 111111111111100011 11122222222111 1356
Q ss_pred EEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCC
Q 010111 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA 414 (518)
Q Consensus 335 ~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~ 414 (518)
.||||.|++.|+.++-.|...| ++...||.++...+|.++.+.|.+++++|++||..+++|+|-|+|++||++++|.
T Consensus 258 GIVYCRTR~~cEq~AI~l~~~G---i~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~q 334 (641)
T KOG0352|consen 258 GIVYCRTRNECEQVAIMLEIAG---IPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQ 334 (641)
T ss_pred eEEEeccHHHHHHHHHHhhhcC---cchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchh
Confidence 8999999999999999998766 8999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhhhhcccCCCCCcEEEEeecchhHHHHHH
Q 010111 415 YIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRF 450 (518)
Q Consensus 415 s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~ 450 (518)
+...|.|-.||+||.|....|-.+++..|...++-+
T Consensus 335 n~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 335 NLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred hhHHHHHhccccccCCCccceeeeecccchHHHHHH
Confidence 999999999999999999999999999988655443
No 79
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=3.6e-32 Score=287.24 Aligned_cols=138 Identities=20% Similarity=0.201 Sum_probs=120.2
Q ss_pred CCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcC--CceEEEEcCc
Q 010111 317 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG--KIQVLVSSDA 394 (518)
Q Consensus 317 ~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g--~~~vLvaT~~ 394 (518)
+.|...|..+++.....++||||+++..+..+.+.|+.. .++.+..+||+|++.+|.++++.|+++ .++|||||++
T Consensus 478 d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~--~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdv 555 (956)
T PRK04914 478 DPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER--EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEI 555 (956)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc--cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechh
Confidence 457778888888877889999999999999999999542 238999999999999999999999974 6999999999
Q ss_pred cccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHHh
Q 010111 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQK 456 (518)
Q Consensus 395 ~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~ 456 (518)
+++|+|++.+++||+||+|+++..|.||+||++|.|+.+.+.+++...+-...+.+.+++.+
T Consensus 556 gseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 556 GSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred hccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999988777765554445556665554
No 80
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=2.1e-32 Score=292.69 Aligned_cols=300 Identities=18% Similarity=0.240 Sum_probs=202.7
Q ss_pred hhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcC----cHHHHHHHHHHHHH-hccccCceEEEee
Q 010111 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP----TRDLALQVKDVFAA-IAPAVGLSVGLAV 136 (518)
Q Consensus 62 ~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~P----t~~La~Q~~~~~~~-~~~~~~~~v~~~~ 136 (518)
++..+..++.++|+|+||||||.. +|.+-... +......+++.-| +++||.|+++++.. ++...|+.+
T Consensus 82 Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~-g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~v---- 154 (1294)
T PRK11131 82 ILEAIRDHQVVIVAGETGSGKTTQ--LPKICLEL-GRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKV---- 154 (1294)
T ss_pred HHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHc-CCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceee----
Confidence 444444567788999999999994 67432211 1111123444446 46888888887764 333222221
Q ss_pred cCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechh-HhhhHhHH
Q 010111 137 GQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD-RLLREAYQ 215 (518)
Q Consensus 137 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah-~~~~~~~~ 215 (518)
... + ....+++|+|+|||+|++.+... ..++++++||||||| ++++.+|.
T Consensus 155 rf~---~------------------------~~s~~t~I~v~TpG~LL~~l~~d--~~Ls~~~~IIIDEAHERsLn~DfL 205 (1294)
T PRK11131 155 RFN---D------------------------QVSDNTMVKLMTDGILLAEIQQD--RLLMQYDTIIIDEAHERSLNIDFI 205 (1294)
T ss_pred cCc---c------------------------ccCCCCCEEEEChHHHHHHHhcC--CccccCcEEEecCccccccccchH
Confidence 100 0 12346799999999999999863 348899999999999 57776664
Q ss_pred hHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEe
Q 010111 216 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295 (518)
Q Consensus 216 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~ 295 (518)
.. .+...++. .+..+.++||||++ ...+...+...|. +.
T Consensus 206 Lg--~Lk~lL~~------------------------------------rpdlKvILmSATid--~e~fs~~F~~apv-I~ 244 (1294)
T PRK11131 206 LG--YLKELLPR------------------------------------RPDLKVIITSATID--PERFSRHFNNAPI-IE 244 (1294)
T ss_pred HH--HHHHhhhc------------------------------------CCCceEEEeeCCCC--HHHHHHHcCCCCE-EE
Confidence 21 12222211 02348899999995 3455555544554 33
Q ss_pred eCCccccCccccceeeeecCCCC---cHHHHHHHH------HhcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEcc
Q 010111 296 TGETRYKLPERLESYKLICESKL---KPLYLVALL------QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 366 (518)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~---k~~~l~~~l------~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h 366 (518)
+....+. ++.++....... +...+..++ .....+.+|||+++..+++.+++.|...+.....+..+|
T Consensus 245 V~Gr~~p----Vei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLh 320 (1294)
T PRK11131 245 VSGRTYP----VEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLY 320 (1294)
T ss_pred EcCcccc----ceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecc
Confidence 3322221 233333322211 222222222 233567899999999999999999987664445688999
Q ss_pred ccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCC---------------C---CCccchhhhhhhccc
Q 010111 367 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK---------------P---AYIKTYIHRAGRTAR 428 (518)
Q Consensus 367 g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~---------------p---~s~~~~~Qr~GR~gR 428 (518)
|++++.+|..+++. .|..+||||||++++|||||++++||+++. | .|..+|.||+||+||
T Consensus 321 g~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR 398 (1294)
T PRK11131 321 ARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGR 398 (1294)
T ss_pred cCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCC
Confidence 99999999999886 578899999999999999999999999863 3 455789999999999
Q ss_pred CCCCCcEEEEeecchhH
Q 010111 429 AGQLGRCFTLLHKDEVC 445 (518)
Q Consensus 429 ~g~~g~~~~~~~~~e~~ 445 (518)
. .+|.|+.++++++..
T Consensus 399 ~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 399 V-SEGICIRLYSEDDFL 414 (1294)
T ss_pred C-CCcEEEEeCCHHHHH
Confidence 9 699999999987763
No 81
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.8e-31 Score=271.88 Aligned_cols=371 Identities=18% Similarity=0.215 Sum_probs=242.8
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
+|. .|+++|.-. .+.-+..-+..++||+|||++|.+|++.++..+ ..++|++||++||.|.++++..+.
T Consensus 79 lg~-~~ydvQliG------g~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~G----~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 79 LGL-RHFDVQLIG------GMVLHEGNIAEMRTGEGKTLVATLPAYLNAISG----RGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred cCC-CcchHHHhh------hhhhccCccccccCCCCchHHHHHHHHHHHhcC----CCEEEEcCCHHHHHHHHHHHHHHh
Confidence 454 788888533 333356668999999999999999999876653 369999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHhHhcCCCCCC-----Cccc
Q 010111 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRGFTL-----EHLC 199 (518)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~~~~~-----~~~~ 199 (518)
..+|+++++++|+.+...+... ..+||+|+||++| ++++.....+++ ..+.
T Consensus 148 ~~lGLtv~~i~gg~~~~~r~~~-----------------------y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~ 204 (896)
T PRK13104 148 EFLGLTVGVIYPDMSHKEKQEA-----------------------YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELN 204 (896)
T ss_pred cccCceEEEEeCCCCHHHHHHH-----------------------hCCCEEEECChhhhHHHHhcCCccchHhhhccccc
Confidence 9999999999999876665322 3579999999999 899887434444 5899
Q ss_pred EEEEechhHhhhH----------------hHHhHHHHHHHhccccc-----cc----------ccCCcc-----------
Q 010111 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDN-----EN----------RFSDAS----------- 237 (518)
Q Consensus 200 ~vViDEah~~~~~----------------~~~~~~~~i~~~~~~~~-----~~----------~~~~~~----------- 237 (518)
++|+||||.|+=+ ..+..+..+...+.... .. .+...+
T Consensus 205 ~~IvDEaDsiLIDeArtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~ 284 (896)
T PRK13104 205 FAIVDEVDSILIDEARTPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKA 284 (896)
T ss_pred eEEeccHhhhhhhccCCceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhC
Confidence 9999999987521 12233333333332210 00 000000
Q ss_pred ------ccccc---------ccccchhhhcccc-----------------------ccCCC-----------CCCCC-c-
Q 010111 238 ------TFLPS---------AFGSLKTIRRCGV-----------------------ERGFK-----------DKPYP-R- 266 (518)
Q Consensus 238 ------~~~~~---------~~~~~~~~~~~~~-----------------------~~~~~-----------~~~~~-~- 266 (518)
..+.. ....+........ .+.+. ..... .
T Consensus 285 ~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~ 364 (896)
T PRK13104 285 KLLDPGESLYHASNIMLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNEN 364 (896)
T ss_pred CccCCcccccCchhhhHHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCc
Confidence 00000 0000000000000 00000 00000 0
Q ss_pred ---------------eeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHH--h
Q 010111 267 ---------------LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ--S 329 (518)
Q Consensus 267 ---------------~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~--~ 329 (518)
.+...||+|......++...+-...+.+.+... .. ..-..-.+......|...+...+. .
T Consensus 365 ~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp--~~-R~d~~d~v~~t~~~k~~av~~~i~~~~ 441 (896)
T PRK13104 365 QTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRS--MI-RKDEADLVYLTQADKFQAIIEDVRECG 441 (896)
T ss_pred eeeeeehHHHHHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCCCC--cc-eecCCCeEEcCHHHHHHHHHHHHHHHH
Confidence 012345555444344443333322222222111 11 111111233344566666666553 3
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCC------
Q 010111 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG------ 403 (518)
Q Consensus 330 ~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~------ 403 (518)
..+.|+||||+|++.++.+++.|...+ +++..+|+.+++.++..+.++|+.| .|+|||++++||+||.-
T Consensus 442 ~~g~PVLVgt~Sie~sE~ls~~L~~~g---i~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~ 516 (896)
T PRK13104 442 VRKQPVLVGTVSIEASEFLSQLLKKEN---IKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAA 516 (896)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHcC---CCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhh
Confidence 357899999999999999999999876 8999999999999999999999999 49999999999999971
Q ss_pred --------------------------------CCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchhHHH----
Q 010111 404 --------------------------------VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLV---- 447 (518)
Q Consensus 404 --------------------------------v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~---- 447 (518)
==+||-...+.|..--.|-.||+||.|.+|.+-.|++-+|.-+-
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~~~f~~ 596 (896)
T PRK13104 517 DLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFAS 596 (896)
T ss_pred hhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHHHhCh
Confidence 11788888899988889999999999999999999997775332
Q ss_pred HHHHHHHHhhc
Q 010111 448 KRFKKLLQKAD 458 (518)
Q Consensus 448 ~~~~~~l~~~~ 458 (518)
+++.+++....
T Consensus 597 ~~~~~~~~~~~ 607 (896)
T PRK13104 597 ERVASMMRRLG 607 (896)
T ss_pred HHHHHHHHHcC
Confidence 44566665543
No 82
>PRK09694 helicase Cas3; Provisional
Probab=100.00 E-value=9.7e-31 Score=274.79 Aligned_cols=336 Identities=19% Similarity=0.193 Sum_probs=210.4
Q ss_pred CccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcccc
Q 010111 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (518)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 128 (518)
..|+|+|..+... ...+..+++.||||+|||.+++.++...+..+ ...+++|..||+++++|+++.+..+....
T Consensus 285 ~~p~p~Q~~~~~~----~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~--~~~gi~~aLPT~Atan~m~~Rl~~~~~~~ 358 (878)
T PRK09694 285 YQPRQLQTLVDAL----PLQPGLTIIEAPTGSGKTEAALAYAWRLIDQG--LADSIIFALPTQATANAMLSRLEALASKL 358 (878)
T ss_pred CCChHHHHHHHhh----ccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CCCeEEEECcHHHHHHHHHHHHHHHHHHh
Confidence 3899999876321 12356789999999999999887766544433 23479999999999999999987654322
Q ss_pred --CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhc---C---CCcEEEeCChHHHHhHhcCCCCCCCccc-
Q 010111 129 --GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ---S---AVDILVATPGRLMDHINATRGFTLEHLC- 199 (518)
Q Consensus 129 --~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~- 199 (518)
..++.+.+|..........+............+.....+++. . -.+|+|||.++++......+...+..+.
T Consensus 359 f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~L 438 (878)
T PRK09694 359 FPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGL 438 (878)
T ss_pred cCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhh
Confidence 357888888876554433322211000000000000012222 1 2699999999988665543333333333
Q ss_pred ---EEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEee
Q 010111 200 ---YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276 (518)
Q Consensus 200 ---~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 276 (518)
+|||||+|.+ +.-....+..++..+... ....|++|||+
T Consensus 439 a~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~-------------------------------------g~~vIllSATL 480 (878)
T PRK09694 439 GRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQA-------------------------------------GGSVILLSATL 480 (878)
T ss_pred ccCeEEEechhhC-CHHHHHHHHHHHHHHHhc-------------------------------------CCcEEEEeCCC
Confidence 8999999976 544455566666554321 12579999999
Q ss_pred cCChhh-hhhccCC---------CCeEEeeCC---ccccCcc-----ccceee-e---ecCC-CCcHHHHHHHHHh-cCC
Q 010111 277 TQDPNK-LAQLDLH---------HPLFLTTGE---TRYKLPE-----RLESYK-L---ICES-KLKPLYLVALLQS-LGE 332 (518)
Q Consensus 277 ~~~~~~-~~~~~~~---------~~~~~~~~~---~~~~~~~-----~~~~~~-~---~~~~-~~k~~~l~~~l~~-~~~ 332 (518)
+..... +...+-. .|.+..... ....... ...... + .... ......+..+++. ..+
T Consensus 481 P~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g 560 (878)
T PRK09694 481 PATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAG 560 (878)
T ss_pred CHHHHHHHHHHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcC
Confidence 866543 2221110 111110000 0000000 000100 0 0011 1112233334433 346
Q ss_pred CcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHH----HHHHHHH-hcCC---ceEEEEcCccccCCCCCCC
Q 010111 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR----SKTLKAF-REGK---IQVLVSSDAMTRGMDVEGV 404 (518)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r----~~~~~~f-~~g~---~~vLvaT~~~~~GiDip~v 404 (518)
++++|||||++.|+.+++.|+........+..+||+++..+| +++++.| ++|+ ..|||||+++++|+||+ +
T Consensus 561 ~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~ 639 (878)
T PRK09694 561 AQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-F 639 (878)
T ss_pred CEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-C
Confidence 789999999999999999998754334679999999999999 4567788 5665 47999999999999995 8
Q ss_pred CEEEEcCCCCCccchhhhhhhcccCCC
Q 010111 405 NNVVNYDKPAYIKTYIHRAGRTARAGQ 431 (518)
Q Consensus 405 ~~VI~~~~p~s~~~~~Qr~GR~gR~g~ 431 (518)
+++|....| .+.++||+||++|.++
T Consensus 640 DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 640 DWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999998888 6789999999999875
No 83
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.9e-31 Score=265.76 Aligned_cols=298 Identities=23% Similarity=0.306 Sum_probs=206.2
Q ss_pred CccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcccc
Q 010111 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (518)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 128 (518)
..|++||.+|+..+.....+++..++++|||+|||.+++..+.. +. .++|||||+++|+.||.+.+.......
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~-~~------~~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAE-LK------RSTLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHH-hc------CCEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 37999999999988876555889999999999999987765543 22 249999999999999987777765432
Q ss_pred CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhH
Q 010111 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (518)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (518)
..++.+.|+... ... ..|.|+|.+.+...-.. ..+....+++||+||||+
T Consensus 108 -~~~g~~~~~~~~---------------------------~~~-~~i~vat~qtl~~~~~l-~~~~~~~~~liI~DE~Hh 157 (442)
T COG1061 108 -DEIGIYGGGEKE---------------------------LEP-AKVTVATVQTLARRQLL-DEFLGNEFGLIIFDEVHH 157 (442)
T ss_pred -cccceecCceec---------------------------cCC-CcEEEEEhHHHhhhhhh-hhhcccccCEEEEEcccc
Confidence 233444443320 001 36999999998764210 123445799999999999
Q ss_pred hhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCCh-hhhhh-c
Q 010111 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP-NKLAQ-L 286 (518)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~-~~~~~-~ 286 (518)
+.+..+......+.... ..+.+|||+...- ..... .
T Consensus 158 ~~a~~~~~~~~~~~~~~------------------------------------------~~LGLTATp~R~D~~~~~~l~ 195 (442)
T COG1061 158 LPAPSYRRILELLSAAY------------------------------------------PRLGLTATPEREDGGRIGDLF 195 (442)
T ss_pred CCcHHHHHHHHhhhccc------------------------------------------ceeeeccCceeecCCchhHHH
Confidence 98887766555444321 1478888865222 11111 1
Q ss_pred cCCCCeEEeeCCccccCcccc---ceee--------------------------------------eecCCCCcHHHHHH
Q 010111 287 DLHHPLFLTTGETRYKLPERL---ESYK--------------------------------------LICESKLKPLYLVA 325 (518)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~---~~~~--------------------------------------~~~~~~~k~~~l~~ 325 (518)
.+..|...............+ ..+. .......+...+..
T Consensus 196 ~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (442)
T COG1061 196 DLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRG 275 (442)
T ss_pred HhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHH
Confidence 111222322221110000000 0000 01111222233334
Q ss_pred HHHhc-CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCC
Q 010111 326 LLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 404 (518)
Q Consensus 326 ~l~~~-~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v 404 (518)
++... .+.+++|||.++.+++.++..+...+ . +..+.|..+..+|.++++.|+.|.+++||++.++.+|+|+|++
T Consensus 276 ~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~---~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~ 351 (442)
T COG1061 276 LLLKHARGDKTLIFASDVEHAYEIAKLFLAPG---I-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDA 351 (442)
T ss_pred HHHHhcCCCcEEEEeccHHHHHHHHHHhcCCC---c-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCC
Confidence 44433 36799999999999999999998654 4 8899999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCCccchhhhhhhcccC
Q 010111 405 NNVVNYDKPAYIKTYIHRAGRTARA 429 (518)
Q Consensus 405 ~~VI~~~~p~s~~~~~Qr~GR~gR~ 429 (518)
+++|...+..|...|+||+||..|.
T Consensus 352 ~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 352 DVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred cEEEEeCCCCcHHHHHHHhhhhccC
Confidence 9999999999999999999999993
No 84
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.9e-31 Score=272.92 Aligned_cols=346 Identities=21% Similarity=0.265 Sum_probs=250.6
Q ss_pred CCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhccc-------CCccEEEE
Q 010111 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-------RCLRALVV 107 (518)
Q Consensus 35 l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~-------~~~~~lil 107 (518)
++.+-..++. |...+.++|....+..+. ...++++|||||+|||-++++-+++.+.++.. ...+++|+
T Consensus 296 lP~Wnq~aF~--g~~sLNrIQS~v~daAl~---~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYI 370 (1674)
T KOG0951|consen 296 LPKWNQPAFF--GKQSLNRIQSKVYDAALR---GDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYI 370 (1674)
T ss_pred Ccchhhhhcc--cchhhhHHHHHHHHHHhc---CcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEE
Confidence 4455555554 566799999998776664 35899999999999999999999999877643 24589999
Q ss_pred cCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhH
Q 010111 108 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (518)
Q Consensus 108 ~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l 187 (518)
+|.++|++.+...|.+....+|++|.-.+|+....... -...+|+||||+.. +.+
T Consensus 371 APmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q------------------------ieeTqVIV~TPEK~-DiI 425 (1674)
T KOG0951|consen 371 APMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ------------------------IEETQVIVTTPEKW-DII 425 (1674)
T ss_pred eeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhh------------------------hhcceeEEeccchh-hhh
Confidence 99999999999999998888999999999997644331 13569999999994 555
Q ss_pred hcC-CCC-CCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCC
Q 010111 188 NAT-RGF-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265 (518)
Q Consensus 188 ~~~-~~~-~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (518)
.+. +.. ..+-++++|+||.| |+.+.+++.++.|.......... ...
T Consensus 426 TRk~gdraY~qlvrLlIIDEIH-LLhDdRGpvLESIVaRt~r~ses-------------------------------~~e 473 (1674)
T KOG0951|consen 426 TRKSGDRAYEQLVRLLIIDEIH-LLHDDRGPVLESIVARTFRRSES-------------------------------TEE 473 (1674)
T ss_pred hcccCchhHHHHHHHHhhhhhh-hcccccchHHHHHHHHHHHHhhh-------------------------------ccc
Confidence 442 222 23468999999999 66777888888887765432211 012
Q ss_pred ceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCC--CcH------HHHHHHHHhcCCCcEEE
Q 010111 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK--LKP------LYLVALLQSLGEEKCIV 337 (518)
Q Consensus 266 ~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~k~------~~l~~~l~~~~~~~~lV 337 (518)
..+.+.+|||+|+..+.-.......+-.+..+.+ ..|..+.+.++-.... .+. .....+++....+++||
T Consensus 474 ~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~s--yRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLV 551 (1674)
T KOG0951|consen 474 GSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSS--YRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLV 551 (1674)
T ss_pred CceeeeecccCCchhhhHHHhccCcccccccCcc--cCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEE
Confidence 2367999999987655443322222333333333 2344444444433332 222 22334556666789999
Q ss_pred EcCChhhHHHHHHHHhhcC----------------------------------CCceeEEEccccCChHHHHHHHHHHhc
Q 010111 338 FTSSVESTHRLCTLLNHFG----------------------------------ELRIKIKEYSGLQRQSVRSKTLKAFRE 383 (518)
Q Consensus 338 f~~s~~~~~~l~~~L~~~~----------------------------------~~~~~v~~~hg~~~~~~r~~~~~~f~~ 383 (518)
|+-|++++.+.++.++... -+.+.++.+|+||+..+|..+.+.|++
T Consensus 552 FVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~ 631 (1674)
T KOG0951|consen 552 FVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFAD 631 (1674)
T ss_pred EEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhc
Confidence 9999999988888887310 124678999999999999999999999
Q ss_pred CCceEEEEcCccccCCCCCCCCEEE----EcCC------CCCccchhhhhhhcccCC--CCCcEEEEeecchh
Q 010111 384 GKIQVLVSSDAMTRGMDVEGVNNVV----NYDK------PAYIKTYIHRAGRTARAG--QLGRCFTLLHKDEV 444 (518)
Q Consensus 384 g~~~vLvaT~~~~~GiDip~v~~VI----~~~~------p~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~e~ 444 (518)
|.++|+|+|-.++.|+|+|.-+++| .||+ +.++.+..||.||+||.+ +.|.+++.....|.
T Consensus 632 g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~ 704 (1674)
T KOG0951|consen 632 GHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSEL 704 (1674)
T ss_pred CceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHh
Confidence 9999999999999999999766665 2554 346788999999999976 35667666655554
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.98 E-value=1.4e-30 Score=272.10 Aligned_cols=320 Identities=20% Similarity=0.236 Sum_probs=210.1
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccC
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 129 (518)
.|++.|.+|+..+.... .++++++.|+||||||.+|+.++.+.+.. +.++||++|+++|+.|+.+.+++.+ +
T Consensus 144 ~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~----g~~vLvLvPt~~L~~Q~~~~l~~~f---g 215 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ----GKQALVLVPEIALTPQMLARFRARF---G 215 (679)
T ss_pred CCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc----CCeEEEEeCcHHHHHHHHHHHHHHh---C
Confidence 58999999999887643 35789999999999999999887776654 3479999999999999999998753 5
Q ss_pred ceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHh
Q 010111 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (518)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~ 209 (518)
..+..++|+.+..++...+. ......++|+|+|++.+. ..+.++++||+||+|..
T Consensus 216 ~~v~~~~s~~s~~~r~~~~~-----------------~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~ 270 (679)
T PRK05580 216 APVAVLHSGLSDGERLDEWR-----------------KAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDS 270 (679)
T ss_pred CCEEEEECCCCHHHHHHHHH-----------------HHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCcc
Confidence 78899999987665543221 122345799999998763 34677999999999965
Q ss_pred hhHhHH---hHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhc
Q 010111 210 LREAYQ---AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 286 (518)
Q Consensus 210 ~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~ 286 (518)
.-.... -....+..... .....+.+++|||++.........
T Consensus 271 s~~~~~~p~y~~r~va~~ra------------------------------------~~~~~~~il~SATps~~s~~~~~~ 314 (679)
T PRK05580 271 SYKQQEGPRYHARDLAVVRA------------------------------------KLENIPVVLGSATPSLESLANAQQ 314 (679)
T ss_pred ccccCcCCCCcHHHHHHHHh------------------------------------hccCCCEEEEcCCCCHHHHHHHhc
Confidence 321110 00111110000 012337899999975333322221
Q ss_pred cCCCCeEEeeCCc--cccCccccceeeeec--CC---CCcHHHHHHHHH-hc-CCCcEEEEcCCh---------------
Q 010111 287 DLHHPLFLTTGET--RYKLPERLESYKLIC--ES---KLKPLYLVALLQ-SL-GEEKCIVFTSSV--------------- 342 (518)
Q Consensus 287 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~---~~k~~~l~~~l~-~~-~~~~~lVf~~s~--------------- 342 (518)
. .......... ....|. +....... .. ..-...+...++ .. .+.++|||+|.+
T Consensus 315 g--~~~~~~l~~r~~~~~~p~-v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~ 391 (679)
T PRK05580 315 G--RYRLLRLTKRAGGARLPE-VEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVA 391 (679)
T ss_pred c--ceeEEEeccccccCCCCe-EEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCcc
Confidence 1 1111111111 001111 11100000 00 001123334333 22 345788887642
Q ss_pred ---------------------------------------------hhHHHHHHHHhhcCCCceeEEEccccCCh--HHHH
Q 010111 343 ---------------------------------------------ESTHRLCTLLNHFGELRIKIKEYSGLQRQ--SVRS 375 (518)
Q Consensus 343 ---------------------------------------------~~~~~l~~~L~~~~~~~~~v~~~hg~~~~--~~r~ 375 (518)
..++.+++.|.... .+.++..+|+++.+ .+++
T Consensus 392 ~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~f-p~~~v~~~~~d~~~~~~~~~ 470 (679)
T PRK05580 392 ECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELF-PEARILRIDRDTTRRKGALE 470 (679)
T ss_pred CCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhC-CCCcEEEEeccccccchhHH
Confidence 24567777776642 34789999999874 5789
Q ss_pred HHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCC--CC----------ccchhhhhhhcccCCCCCcEEEEeecc
Q 010111 376 KTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP--AY----------IKTYIHRAGRTARAGQLGRCFTLLHKD 442 (518)
Q Consensus 376 ~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p--~s----------~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 442 (518)
.+++.|++|+.+|||+|+++++|+|+|++++|+++|.. -+ ...|.|++||+||.+..|.+++....-
T Consensus 471 ~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 471 QLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred HHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCC
Confidence 99999999999999999999999999999999665543 22 246899999999999999999777543
No 86
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=6.3e-30 Score=262.81 Aligned_cols=368 Identities=19% Similarity=0.196 Sum_probs=245.2
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
+|. .|+++|.-..-. -.+.-+..++||+|||+++.+|++-+...+ ..+-|++||..||.|.++++..+.
T Consensus 78 lg~-~~~dvQlig~l~------L~~G~Iaem~TGeGKTLva~lpa~l~aL~G----~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 78 LGM-RHFDVQLIGGMV------LHEGKIAEMKTGEGKTLVATLPAYLNALTG----KGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred hCC-CCCccHHHhhHH------hcCCchhhhhcCCCcHHHHHHHHHHHHHcC----CCEEEEecCHHHHHHHHHHHHHHH
Confidence 565 888999765321 234458999999999999999996433332 257899999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHhHhcCCC-----CCCCccc
Q 010111 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRG-----FTLEHLC 199 (518)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~~-----~~~~~~~ 199 (518)
+.+|+++++++|+.+...+... ..++|+++||+.| ++++..... .....+.
T Consensus 147 ~~LGlsv~~i~~~~~~~er~~~-----------------------y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~ 203 (830)
T PRK12904 147 EFLGLSVGVILSGMSPEERREA-----------------------YAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLN 203 (830)
T ss_pred hhcCCeEEEEcCCCCHHHHHHh-----------------------cCCCeEEECCcchhhhhhhcccccchhhhcccccc
Confidence 9999999999999887765432 3479999999999 888876432 2367799
Q ss_pred EEEEechhHhhhH----------------hHHhHHHHHHHhcccccc---------------------------cccCCc
Q 010111 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDNE---------------------------NRFSDA 236 (518)
Q Consensus 200 ~vViDEah~~~~~----------------~~~~~~~~i~~~~~~~~~---------------------------~~~~~~ 236 (518)
++|+||||.|+=+ ..+..+..+...+..... +.+...
T Consensus 204 ~aIvDEaDsiLIDeArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~ 283 (830)
T PRK12904 204 YAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPE 283 (830)
T ss_pred eEEEechhhheeccCCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChh
Confidence 9999999987411 122223333333211100 000000
Q ss_pred ccccccc-cccchhhhc--------------------ccc---ccCCC--------------C----------------C
Q 010111 237 STFLPSA-FGSLKTIRR--------------------CGV---ERGFK--------------D----------------K 262 (518)
Q Consensus 237 ~~~~~~~-~~~~~~~~~--------------------~~~---~~~~~--------------~----------------~ 262 (518)
...+.++ ...+..... ++. .+.+. - .
T Consensus 284 ~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr 363 (830)
T PRK12904 284 NIALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFR 363 (830)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHH
Confidence 0000000 000000000 000 00000 0 0
Q ss_pred CCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHh--cCCCcEEEEcC
Q 010111 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTS 340 (518)
Q Consensus 263 ~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~ 340 (518)
.|+ +...||+|......++...+-...+.+.+... ..... ..-.+......|...+...+.. ..+.++||||+
T Consensus 364 ~Y~--kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp--~~r~d-~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~ 438 (830)
T PRK12904 364 MYE--KLAGMTGTADTEAEEFREIYNLDVVVIPTNRP--MIRID-HPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTV 438 (830)
T ss_pred hcc--hhcccCCCcHHHHHHHHHHhCCCEEEcCCCCC--eeeee-CCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 001 24567778765555555544444333333221 11111 1122334556778888887755 56789999999
Q ss_pred ChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCC----------------
Q 010111 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV---------------- 404 (518)
Q Consensus 341 s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v---------------- 404 (518)
|+..++.+++.|...+ +++..+|+. +.+|+..+..|+.+...|+|||++++||+||+--
T Consensus 439 Si~~se~Ls~~L~~~g---i~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~ 513 (830)
T PRK12904 439 SIEKSELLSKLLKKAG---IPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETE 513 (830)
T ss_pred cHHHHHHHHHHHHHCC---CceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhh
Confidence 9999999999999876 899999995 7789999999999999999999999999999832
Q ss_pred ----------------------CEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchhHHH----HHHHHHHHhh
Q 010111 405 ----------------------NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLV----KRFKKLLQKA 457 (518)
Q Consensus 405 ----------------------~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~----~~~~~~l~~~ 457 (518)
=+||....+.|..--.|-.||+||.|.+|.+-.|++-+|.-+- +++.+++...
T Consensus 514 ~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~~~~ 592 (830)
T PRK12904 514 EQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRVKGMMDRL 592 (830)
T ss_pred HHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHHHHhhchHHHHHHHHHc
Confidence 1788899999999999999999999999999999997764331 2445555443
No 87
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=1.3e-30 Score=280.04 Aligned_cols=320 Identities=17% Similarity=0.206 Sum_probs=212.7
Q ss_pred hCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 45 ~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
...|...-|+...- +.++..+..++.++|+|+||||||.. +|.+-.-. +.....++++.-|.|--|..+++.+...
T Consensus 59 ~~~~~~~LPi~~~~-~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~-~~~~~~~I~~tQPRRlAA~svA~RvA~e 134 (1283)
T TIGR01967 59 EIRYPDNLPVSAKR-EDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLEL-GRGSHGLIGHTQPRRLAARTVAQRIAEE 134 (1283)
T ss_pred cccCCCCCCHHHHH-HHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHc-CCCCCceEecCCccHHHHHHHHHHHHHH
Confidence 34565555655422 34455555677889999999999985 45442211 1112235666678888777666554443
Q ss_pred ccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEe
Q 010111 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204 (518)
Q Consensus 125 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViD 204 (518)
.+..++..+|.....+. ....+..|.|+|+|+|+..+... ..+..+++||||
T Consensus 135 ---lg~~lG~~VGY~vR~~~-----------------------~~s~~T~I~~~TdGiLLr~l~~d--~~L~~~~~IIID 186 (1283)
T TIGR01967 135 ---LGTPLGEKVGYKVRFHD-----------------------QVSSNTLVKLMTDGILLAETQQD--RFLSRYDTIIID 186 (1283)
T ss_pred ---hCCCcceEEeeEEcCCc-----------------------ccCCCceeeeccccHHHHHhhhC--cccccCcEEEEc
Confidence 23444444443211100 12345789999999999988763 357899999999
Q ss_pred chh-HhhhHhHHhH-HHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhh
Q 010111 205 ETD-RLLREAYQAW-LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 282 (518)
Q Consensus 205 Eah-~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~ 282 (518)
||| ++++.++.-. +..++... +..+.++||||+. ...
T Consensus 187 EaHERsL~~D~LL~lLk~il~~r---------------------------------------pdLKlIlmSATld--~~~ 225 (1283)
T TIGR01967 187 EAHERSLNIDFLLGYLKQLLPRR---------------------------------------PDLKIIITSATID--PER 225 (1283)
T ss_pred CcchhhccchhHHHHHHHHHhhC---------------------------------------CCCeEEEEeCCcC--HHH
Confidence 999 5777665432 33333221 2347899999995 445
Q ss_pred hhhccCCCCeEEeeCCccccCccccceeeeecCC------CCcHHHHHHHHH---hcCCCcEEEEcCChhhHHHHHHHHh
Q 010111 283 LAQLDLHHPLFLTTGETRYKLPERLESYKLICES------KLKPLYLVALLQ---SLGEEKCIVFTSSVESTHRLCTLLN 353 (518)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~k~~~l~~~l~---~~~~~~~lVf~~s~~~~~~l~~~L~ 353 (518)
+...+...|++ .+....+. +..++..... ..+...+...+. ....+.+|||+++..+++.+++.|+
T Consensus 226 fa~~F~~apvI-~V~Gr~~P----Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~ 300 (1283)
T TIGR01967 226 FSRHFNNAPII-EVSGRTYP----VEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILR 300 (1283)
T ss_pred HHHHhcCCCEE-EECCCccc----ceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHH
Confidence 55555445543 33222222 2222221111 112233333232 2246899999999999999999998
Q ss_pred hcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCC------------------CC
Q 010111 354 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------------------AY 415 (518)
Q Consensus 354 ~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p------------------~s 415 (518)
..+..++.+..+||++++.+|..+++.+ +..+|||||+++++|||||++++||+++.+ .|
T Consensus 301 ~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~IS 378 (1283)
T TIGR01967 301 KRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPIS 378 (1283)
T ss_pred hcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCC
Confidence 7654457789999999999999986653 346999999999999999999999999854 35
Q ss_pred ccchhhhhhhcccCCCCCcEEEEeecchhH
Q 010111 416 IKTYIHRAGRTARAGQLGRCFTLLHKDEVC 445 (518)
Q Consensus 416 ~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~ 445 (518)
..+|.||.||+||.| +|.|+.++++++..
T Consensus 379 kasa~QRaGRAGR~~-~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 379 QASANQRKGRCGRVA-PGICIRLYSEEDFN 407 (1283)
T ss_pred HHHHHHHhhhhCCCC-CceEEEecCHHHHH
Confidence 578999999999997 99999999987763
No 88
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.97 E-value=1.6e-30 Score=235.76 Aligned_cols=335 Identities=20% Similarity=0.284 Sum_probs=240.6
Q ss_pred CCHHHHHHHHh-CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHH
Q 010111 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (518)
Q Consensus 35 l~~~~~~~l~~-~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~L 113 (518)
.+++..+.|++ ++..+++|.|.+++...+ .|+++++..|||.||+++|.+|++- ....+|+++|...|
T Consensus 78 ws~e~~~ilk~~f~lekfrplq~~ain~~m----a~ed~~lil~tgggkslcyqlpal~-------adg~alvi~plisl 146 (695)
T KOG0353|consen 78 WSDEAKDILKEQFHLEKFRPLQLAAINATM----AGEDAFLILPTGGGKSLCYQLPALC-------ADGFALVICPLISL 146 (695)
T ss_pred CchHHHHHHHHHhhHHhcChhHHHHhhhhh----ccCceEEEEeCCCccchhhhhhHHh-------cCCceEeechhHHH
Confidence 67788888875 688899999999977665 4999999999999999999999984 23369999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHH------HhH
Q 010111 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM------DHI 187 (518)
Q Consensus 114 a~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~------~~l 187 (518)
++.+.-.++.+ |+....+...++-..... . +.....-.....+++.||+.+. +.+
T Consensus 147 medqil~lkql----gi~as~lnansske~~k~-v--------------~~~i~nkdse~kliyvtpekiaksk~~mnkl 207 (695)
T KOG0353|consen 147 MEDQILQLKQL----GIDASMLNANSSKEEAKR-V--------------EAAITNKDSEFKLIYVTPEKIAKSKKFMNKL 207 (695)
T ss_pred HHHHHHHHHHh----CcchhhccCcccHHHHHH-H--------------HHHHcCCCceeEEEEecHHHHHHHHHHHHHH
Confidence 98877777776 566555555554332211 1 0000011123578999999874 333
Q ss_pred hcCCCCCCCcccEEEEechhHhhhHhHH--hHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCC
Q 010111 188 NATRGFTLEHLCYLVVDETDRLLREAYQ--AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265 (518)
Q Consensus 188 ~~~~~~~~~~~~~vViDEah~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (518)
.+ .+....+.++.+||+|+...+++. ..... +..+.+ ..+
T Consensus 208 ek--a~~~~~~~~iaidevhccsqwghdfr~dy~~-l~ilkr-----------------------------------qf~ 249 (695)
T KOG0353|consen 208 EK--ALEAGFFKLIAIDEVHCCSQWGHDFRPDYKA-LGILKR-----------------------------------QFK 249 (695)
T ss_pred HH--HhhcceeEEEeecceeehhhhCcccCcchHH-HHHHHH-----------------------------------hCC
Confidence 33 456677999999999988666532 11111 111110 013
Q ss_pred ceeeEEEeEeecCChhhhhhccCC--CCeEEeeCCccccCccccceeeeecCCCC---cHHHHHHHHH-hcCCCcEEEEc
Q 010111 266 RLVKMVLSATLTQDPNKLAQLDLH--HPLFLTTGETRYKLPERLESYKLICESKL---KPLYLVALLQ-SLGEEKCIVFT 339 (518)
Q Consensus 266 ~~~~i~~SaT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---k~~~l~~~l~-~~~~~~~lVf~ 339 (518)
....+.++||.++.+..-.+..+. ....+..+... |. + .|.+...+.. -.+.+..+++ ...+...||||
T Consensus 250 ~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr---~n-l-~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc 324 (695)
T KOG0353|consen 250 GAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNR---PN-L-KYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYC 324 (695)
T ss_pred CCceeeeehhhhcchhhHHHHHHhHHhhheeecccCC---CC-c-eeEeeeCCCChHHHHHHHHHHhccccCCCcceEEE
Confidence 346789999998877655443322 22222222221 11 1 1222222222 2333444444 34567899999
Q ss_pred CChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccch
Q 010111 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419 (518)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~ 419 (518)
-|++.|+.++..|++.| +....+|..|.+.+|..+-+.|..|++.|+|+|-.+++|||-|++++||+..+|.|...|
T Consensus 325 ~sq~d~ekva~alkn~g---i~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksieny 401 (695)
T KOG0353|consen 325 FSQKDCEKVAKALKNHG---IHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENY 401 (695)
T ss_pred eccccHHHHHHHHHhcC---ccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHH
Confidence 99999999999999877 899999999999999999999999999999999999999999999999999999999999
Q ss_pred hh-------------------------------------------hhhhcccCCCCCcEEEEeecchhH
Q 010111 420 IH-------------------------------------------RAGRTARAGQLGRCFTLLHKDEVC 445 (518)
Q Consensus 420 ~Q-------------------------------------------r~GR~gR~g~~g~~~~~~~~~e~~ 445 (518)
.| ..||+||.+.+..|+.++.-.|..
T Consensus 402 yqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~dif 470 (695)
T KOG0353|consen 402 YQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIF 470 (695)
T ss_pred HHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHH
Confidence 99 679999999999999999866653
No 89
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=4.9e-30 Score=256.71 Aligned_cols=349 Identities=18% Similarity=0.187 Sum_probs=239.5
Q ss_pred hCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 45 ~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
..+| +|-++|++|+-.+. .|..+++.|+|.+|||+++-.++.-.-. .+.|++|.+|-++|.+|-++.|+.-
T Consensus 293 ~~pF-elD~FQk~Ai~~le----rg~SVFVAAHTSAGKTvVAEYAialaq~----h~TR~iYTSPIKALSNQKfRDFk~t 363 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLE----RGDSVFVAAHTSAGKTVVAEYAIALAQK----HMTRTIYTSPIKALSNQKFRDFKET 363 (1248)
T ss_pred hCCC-CccHHHHHHHHHHH----cCCeEEEEecCCCCcchHHHHHHHHHHh----hccceEecchhhhhccchHHHHHHh
Confidence 4567 88999999976654 5999999999999999987765543222 3558999999999999999988876
Q ss_pred ccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEe
Q 010111 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204 (518)
Q Consensus 125 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViD 204 (518)
+.. +++++|+...+ ..+.++|+|.+.|.+++.++ .--++++.+||||
T Consensus 364 F~D----vgLlTGDvqin----------------------------PeAsCLIMTTEILRsMLYrg-adliRDvE~VIFD 410 (1248)
T KOG0947|consen 364 FGD----VGLLTGDVQIN----------------------------PEASCLIMTTEILRSMLYRG-ADLIRDVEFVIFD 410 (1248)
T ss_pred ccc----cceeecceeeC----------------------------CCcceEeehHHHHHHHHhcc-cchhhccceEEEe
Confidence 543 34788887543 34689999999999999884 3447889999999
Q ss_pred chhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhh
Q 010111 205 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 284 (518)
Q Consensus 205 Eah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~ 284 (518)
|+|.+.|..++-..++++=.++ ..+++|++|||.++..+...
T Consensus 411 EVHYiND~eRGvVWEEViIMlP--------------------------------------~HV~~IlLSATVPN~~EFA~ 452 (1248)
T KOG0947|consen 411 EVHYINDVERGVVWEEVIIMLP--------------------------------------RHVNFILLSATVPNTLEFAD 452 (1248)
T ss_pred eeeecccccccccceeeeeecc--------------------------------------ccceEEEEeccCCChHHHHH
Confidence 9999988888877777766655 33478999999987654443
Q ss_pred hccCC-CCeEEeeCCccccCccccceeeeec-------------------------------------------------
Q 010111 285 QLDLH-HPLFLTTGETRYKLPERLESYKLIC------------------------------------------------- 314 (518)
Q Consensus 285 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 314 (518)
|..-. +-.+..++....++ .++++....
T Consensus 453 WIGRtK~K~IyViST~kRPV--PLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~g 530 (1248)
T KOG0947|consen 453 WIGRTKQKTIYVISTSKRPV--PLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRG 530 (1248)
T ss_pred HhhhccCceEEEEecCCCcc--ceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccC
Confidence 32111 11111111100000 111110000
Q ss_pred ----------------CCCC---cHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCCC-----------------
Q 010111 315 ----------------ESKL---KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL----------------- 358 (518)
Q Consensus 315 ----------------~~~~---k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~----------------- 358 (518)
.... ....+.+.++...--|+||||-|++.|++.+++|....-.
T Consensus 531 gk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~ 610 (1248)
T KOG0947|consen 531 GKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVA 610 (1248)
T ss_pred CcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 0001 1223444445555569999999999999999999863210
Q ss_pred -------------------ceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCC------
Q 010111 359 -------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------ 413 (518)
Q Consensus 359 -------------------~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p------ 413 (518)
.-.+++|||++-+--++-+.-.|..|-++||+||.++++|||.|.-.+|+ -.+-
T Consensus 611 rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF-~Sl~KhDG~e 689 (1248)
T KOG0947|consen 611 RLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVF-SSLRKHDGNE 689 (1248)
T ss_pred hcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEe-eehhhccCcc
Confidence 12478999999999999999999999999999999999999999655554 3322
Q ss_pred ---CCccchhhhhhhcccCCC--CCcEEEEeecchhHHHHHHHHHHHhhcCCCCCccCCCchhhhhhHHHHHHHHHHHH
Q 010111 414 ---AYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEVCLVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLK 487 (518)
Q Consensus 414 ---~s~~~~~Qr~GR~gR~g~--~g~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (518)
-.+.+|.||+|||||.|- .|.+++++... ......+++++- .-|..+.+.|+-.|..++.-++
T Consensus 690 fR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~-vp~~a~l~~li~----------G~~~~L~SQFRlTY~MILnLLR 757 (1248)
T KOG0947|consen 690 FRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS-VPSAATLKRLIM----------GGPTRLESQFRLTYGMILNLLR 757 (1248)
T ss_pred eeecCChhHHhhhccccccccCcCceEEEEecCC-CCCHHHHhhHhc----------CCCchhhhhhhhHHHHHHHHHH
Confidence 246799999999999984 56666666543 333455555431 2334444455555555444443
No 90
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.6e-29 Score=258.83 Aligned_cols=370 Identities=19% Similarity=0.225 Sum_probs=236.1
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
+|. .|++.|.-+.-.+ +..-+..+.||+|||+++.+|++-....+ ..+-+++||-.||.|-++.+..+.
T Consensus 77 ~g~-~~~dvQlig~l~l------~~G~iaEm~TGEGKTLvA~l~a~l~al~G----~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVL------HEGNIAEMKTGEGKTLTATLPVYLNALTG----KGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred hCC-CCchhHHHHHHHH------hcCCcccccCCCCCcHHHHHHHHHHHHcC----CCeEEEeccHHHHHhhHHHHHHHH
Confidence 565 8899997663221 23349999999999999999998877664 379999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHH-HhHhcCC-----CCCCCccc
Q 010111 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM-DHINATR-----GFTLEHLC 199 (518)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~-~~l~~~~-----~~~~~~~~ 199 (518)
..+|++++++.|+.+...+.. ...+||+++|...|- ++|...- ..-...+.
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~-----------------------~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~ 202 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRA-----------------------AYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLN 202 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHH-----------------------HhcCCCeecCCccccccchhhccccchhhhhccCcc
Confidence 999999999999877665532 246799999997763 3443311 11245688
Q ss_pred EEEEechhHhhhH----------------hHHhHHHHHHHhcccccc---------cccC-----------Ccc-----c
Q 010111 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDNE---------NRFS-----------DAS-----T 238 (518)
Q Consensus 200 ~vViDEah~~~~~----------------~~~~~~~~i~~~~~~~~~---------~~~~-----------~~~-----~ 238 (518)
+.|+||+|.++=+ ..+..+..+...+..... ..+. ..+ .
T Consensus 203 ~aIvDEvDSiLiDeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~ 282 (796)
T PRK12906 203 YAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEK 282 (796)
T ss_pred eeeeccchheeeccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHH
Confidence 9999999976411 122222333332221100 0000 000 0
Q ss_pred c--cccccc------------cchhhhc--------------------ccc---ccCCC--------------CCCCC--
Q 010111 239 F--LPSAFG------------SLKTIRR--------------------CGV---ERGFK--------------DKPYP-- 265 (518)
Q Consensus 239 ~--~~~~~~------------~~~~~~~--------------------~~~---~~~~~--------------~~~~~-- 265 (518)
. ....+. .+..... ++. .+.+. -++..
T Consensus 283 ~~~i~~l~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t 362 (796)
T PRK12906 283 LFGLDNLYDSENTALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQT 362 (796)
T ss_pred HcCCccccCchhhhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCcee
Confidence 0 000000 0000000 000 00000 00000
Q ss_pred ------------ceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhc--C
Q 010111 266 ------------RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--G 331 (518)
Q Consensus 266 ------------~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~ 331 (518)
-.+...||+|......++...+-...+.+.+.. ...... ..-.+......|...+...+... .
T Consensus 363 ~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~vv~IPtnk--p~~r~d-~~d~i~~t~~~K~~al~~~i~~~~~~ 439 (796)
T PRK12906 363 LATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVITIPTNR--PVIRKD-SPDLLYPTLDSKFNAVVKEIKERHAK 439 (796)
T ss_pred eeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEEcCCCC--Ceeeee-CCCeEEcCHHHHHHHHHHHHHHHHhC
Confidence 001234555554333333332222222221111 000000 11122334456777777777533 6
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCC---CCC---
Q 010111 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE---GVN--- 405 (518)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip---~v~--- 405 (518)
+.++||||+|+..++.+++.|.+.+ +++..+|+++.+.++..+.++++.|. |+|||++++||+||+ +|.
T Consensus 440 g~pvLI~t~si~~se~ls~~L~~~g---i~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~G 514 (796)
T PRK12906 440 GQPVLVGTVAIESSERLSHLLDEAG---IPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELG 514 (796)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCC---CCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhC
Confidence 7899999999999999999999876 89999999999888888888888875 999999999999995 788
Q ss_pred --EEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchhHHH----HHHHHHHHhh
Q 010111 406 --NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLV----KRFKKLLQKA 457 (518)
Q Consensus 406 --~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~----~~~~~~l~~~ 457 (518)
+||+++.|.|...|.|+.||+||.|.+|.+..|++.+|.-+- +++.+++...
T Consensus 515 GLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~l~~~f~~~~~~~~~~~~ 572 (796)
T PRK12906 515 GLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRRFGSDRVKAFLDRL 572 (796)
T ss_pred CcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccchHHHhhCcHHHHHHHHHc
Confidence 999999999999999999999999999999999998764321 2455555543
No 91
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=5.2e-29 Score=259.12 Aligned_cols=330 Identities=17% Similarity=0.188 Sum_probs=247.9
Q ss_pred CHHHHHHH-HhCCCCccchhhHHHHHHhhCCCCCC--CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHH
Q 010111 36 DPRLKVAL-QNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (518)
Q Consensus 36 ~~~~~~~l-~~~g~~~~~~~Q~~a~~~~~~~~~~~--~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~ 112 (518)
+......+ ..++| .-||-|..||.++...+.++ .|-||||..|-|||-+++=+++....++ .+|.|+|||.-
T Consensus 580 d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G----KQVAvLVPTTl 654 (1139)
T COG1197 580 DTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG----KQVAVLVPTTL 654 (1139)
T ss_pred ChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC----CeEEEEcccHH
Confidence 33333333 45788 78999999999999888777 4779999999999999998888877765 48999999999
Q ss_pred HHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCC
Q 010111 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (518)
Q Consensus 113 La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~ 192 (518)
||+|.++.|+.-...++++|..+.--.+..++..-+ ........||+|+|+ .++.+ .
T Consensus 655 LA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il-----------------~~la~G~vDIvIGTH----rLL~k--d 711 (1139)
T COG1197 655 LAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEIL-----------------KGLAEGKVDIVIGTH----RLLSK--D 711 (1139)
T ss_pred hHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHH-----------------HHHhcCCccEEEech----HhhCC--C
Confidence 999999999998888899999887776655553322 122335689999994 44443 5
Q ss_pred CCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEE
Q 010111 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (518)
Q Consensus 193 ~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (518)
..+.++.++||||-|++. ....+.+..+-. .+..+-+
T Consensus 712 v~FkdLGLlIIDEEqRFG-Vk~KEkLK~Lr~------------------------------------------~VDvLTL 748 (1139)
T COG1197 712 VKFKDLGLLIIDEEQRFG-VKHKEKLKELRA------------------------------------------NVDVLTL 748 (1139)
T ss_pred cEEecCCeEEEechhhcC-ccHHHHHHHHhc------------------------------------------cCcEEEe
Confidence 788999999999999873 223333333332 2357889
Q ss_pred eEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhc-CCCcEEEEcCChhhHHHHHHH
Q 010111 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTL 351 (518)
Q Consensus 273 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~lVf~~s~~~~~~l~~~ 351 (518)
|||+-+......-..+++--++.+..... -.++.+.. +......-..++++. .++++-..+|.++..+.+++.
T Consensus 749 SATPIPRTL~Msm~GiRdlSvI~TPP~~R---~pV~T~V~---~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~ 822 (1139)
T COG1197 749 SATPIPRTLNMSLSGIRDLSVIATPPEDR---LPVKTFVS---EYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAER 822 (1139)
T ss_pred eCCCCcchHHHHHhcchhhhhccCCCCCC---cceEEEEe---cCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHH
Confidence 99987776666655655554444433211 11222222 222221222233332 467888888999999999999
Q ss_pred HhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCC-ccchhhhhhhcccCC
Q 010111 352 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY-IKTYIHRAGRTARAG 430 (518)
Q Consensus 352 L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s-~~~~~Qr~GR~gR~g 430 (518)
|+..- +..++++.||.|+..+-++++..|-+|+.+|||||.+.+.|||||+++.+|+-+..+- .+++.|..||+||.+
T Consensus 823 L~~LV-PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~ 901 (1139)
T COG1197 823 LRELV-PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSN 901 (1139)
T ss_pred HHHhC-CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCcc
Confidence 98873 4578999999999999999999999999999999999999999999999998776653 678899999999999
Q ss_pred CCCcEEEEeecch
Q 010111 431 QLGRCFTLLHKDE 443 (518)
Q Consensus 431 ~~g~~~~~~~~~e 443 (518)
+.+.|+.++.+..
T Consensus 902 ~~AYAYfl~p~~k 914 (1139)
T COG1197 902 KQAYAYFLYPPQK 914 (1139)
T ss_pred ceEEEEEeecCcc
Confidence 9999999998644
No 92
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.3e-28 Score=250.90 Aligned_cols=146 Identities=18% Similarity=0.264 Sum_probs=123.3
Q ss_pred CCCHHHHHHHH-----hCCCCcc---chhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEE
Q 010111 34 CLDPRLKVALQ-----NMGISSL---FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 105 (518)
Q Consensus 34 ~l~~~~~~~l~-----~~g~~~~---~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~l 105 (518)
++..++.+.+. .+||..| +|+|.++++.++ .++++++.++||+|||++|++|++.++..+. .++
T Consensus 68 al~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~----l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~----~v~ 139 (970)
T PRK12899 68 GVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIA----MHKGFITEMQTGEGKTLTAVMPLYLNALTGK----PVH 139 (970)
T ss_pred CCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhh----cCCCeEEEeCCCCChHHHHHHHHHHHHhhcC----CeE
Confidence 57778888777 5899998 999999876655 5899999999999999999999998876532 489
Q ss_pred EEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHH-H
Q 010111 106 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-M 184 (518)
Q Consensus 106 il~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l-~ 184 (518)
|++||++||.|.++.+..+.+.+++++.+++||.+...+... ..++|+||||++| +
T Consensus 140 IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~-----------------------y~~DIVygTPgRLgf 196 (970)
T PRK12899 140 LVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEI-----------------------YQCDVVYGTASEFGF 196 (970)
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH-----------------------cCCCEEEECCChhHH
Confidence 999999999999999999999999999999999988776432 2489999999999 9
Q ss_pred HhHhcCCCCCCC-------cccEEEEechhHhhh
Q 010111 185 DHINATRGFTLE-------HLCYLVVDETDRLLR 211 (518)
Q Consensus 185 ~~l~~~~~~~~~-------~~~~vViDEah~~~~ 211 (518)
+++.. +.+.++ .+.++|+||||.|+-
T Consensus 197 DyLrd-~~~~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 197 DYLRD-NSIATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred HHhhC-CCCCcCHHHhhcccccEEEEechhhhhh
Confidence 99887 334433 568999999998853
No 93
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=4.4e-29 Score=259.59 Aligned_cols=324 Identities=21% Similarity=0.214 Sum_probs=235.7
Q ss_pred HHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHH
Q 010111 40 KVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (518)
Q Consensus 40 ~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~ 119 (518)
.......+| +|.++|++|+..+. .|.+++++||||+|||.++-.++...+.++ .+++|.+|.++|.+|.++
T Consensus 110 ~~~~~~~~F-~LD~fQ~~a~~~Le----r~esVlV~ApTssGKTvVaeyAi~~al~~~----qrviYTsPIKALsNQKyr 180 (1041)
T COG4581 110 APPAREYPF-ELDPFQQEAIAILE----RGESVLVCAPTSSGKTVVAEYAIALALRDG----QRVIYTSPIKALSNQKYR 180 (1041)
T ss_pred CcHHHhCCC-CcCHHHHHHHHHHh----CCCcEEEEccCCCCcchHHHHHHHHHHHcC----CceEeccchhhhhhhHHH
Confidence 334456788 99999999976544 599999999999999999888888777664 369999999999999998
Q ss_pred HHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCccc
Q 010111 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 199 (518)
Q Consensus 120 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~ 199 (518)
.+........--+++.+|+.+. ..++.++|+|.+.|.+++.+ +...+..+.
T Consensus 181 dl~~~fgdv~~~vGL~TGDv~I----------------------------N~~A~clvMTTEILRnMlyr-g~~~~~~i~ 231 (1041)
T COG4581 181 DLLAKFGDVADMVGLMTGDVSI----------------------------NPDAPCLVMTTEILRNMLYR-GSESLRDIE 231 (1041)
T ss_pred HHHHHhhhhhhhccceecceee----------------------------CCCCceEEeeHHHHHHHhcc-Ccccccccc
Confidence 8776543223346888888753 35679999999999999988 457789999
Q ss_pred EEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCC
Q 010111 200 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279 (518)
Q Consensus 200 ~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~ 279 (518)
.||+||+|.|.+...+...+.++-.++ ..++.+++|||.++.
T Consensus 232 ~ViFDEvHyi~D~eRG~VWEE~Ii~lP--------------------------------------~~v~~v~LSATv~N~ 273 (1041)
T COG4581 232 WVVFDEVHYIGDRERGVVWEEVIILLP--------------------------------------DHVRFVFLSATVPNA 273 (1041)
T ss_pred eEEEEeeeeccccccchhHHHHHHhcC--------------------------------------CCCcEEEEeCCCCCH
Confidence 999999999999998888888887765 234789999999877
Q ss_pred hhhhhhcc--CCCCeEEeeCCccccCccccceeeeec-------CCCC--------------------------------
Q 010111 280 PNKLAQLD--LHHPLFLTTGETRYKLPERLESYKLIC-------ESKL-------------------------------- 318 (518)
Q Consensus 280 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-------------------------------- 318 (518)
...-.+.. -..|..+...... |..+.+++... +...
T Consensus 274 ~EF~~Wi~~~~~~~~~vv~t~~R---pvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~ 350 (1041)
T COG4581 274 EEFAEWIQRVHSQPIHVVSTEHR---PVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRY 350 (1041)
T ss_pred HHHHHHHHhccCCCeEEEeecCC---CCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccc
Confidence 65544432 2334333322211 11122111110 0100
Q ss_pred ---------------cHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCC-------------------------C
Q 010111 319 ---------------KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE-------------------------L 358 (518)
Q Consensus 319 ---------------k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~-------------------------~ 358 (518)
+...+.+.+.....-++|+|+-|+..|+..+..+..... .
T Consensus 351 a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~ 430 (1041)
T COG4581 351 ARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDR 430 (1041)
T ss_pred cccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhh
Confidence 011233333444456899999999999999888763110 0
Q ss_pred c-------------eeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCC---------CCCc
Q 010111 359 R-------------IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK---------PAYI 416 (518)
Q Consensus 359 ~-------------~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~---------p~s~ 416 (518)
+ -.++++|++|-+..|..+...|..|-++|+++|.+++.|+|.|.-+ |+...+ +-++
T Consensus 431 ~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPart-vv~~~l~K~dG~~~r~L~~ 509 (1041)
T COG4581 431 ELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPART-VVFTSLSKFDGNGHRWLSP 509 (1041)
T ss_pred cCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccc-eeeeeeEEecCCceeecCh
Confidence 0 1357899999999999999999999999999999999999999555 444332 3467
Q ss_pred cchhhhhhhcccCCC--CCcEEEEeecch
Q 010111 417 KTYIHRAGRTARAGQ--LGRCFTLLHKDE 443 (518)
Q Consensus 417 ~~~~Qr~GR~gR~g~--~g~~~~~~~~~e 443 (518)
..|.|+.||+||.|. .|.+++.-.+..
T Consensus 510 gEy~QmsGRAGRRGlD~~G~vI~~~~~~~ 538 (1041)
T COG4581 510 GEYTQMSGRAGRRGLDVLGTVIVIEPPFE 538 (1041)
T ss_pred hHHHHhhhhhccccccccceEEEecCCCC
Confidence 899999999999995 477776654433
No 94
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.97 E-value=1.4e-28 Score=266.05 Aligned_cols=315 Identities=20% Similarity=0.206 Sum_probs=193.8
Q ss_pred CccchhhHHHHHHhhCCCCCC-CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccc
Q 010111 49 SSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (518)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~-~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~ 127 (518)
..+++||.+|+..+...+..| +++++++|||||||++++. ++..+.+. ....++|||+|+++|+.|+.+.|..+...
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~-~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~ 489 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKA-KRFRRILFLVDRSALGEQAEDAFKDTKIE 489 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhc-CccCeEEEEecHHHHHHHHHHHHHhcccc
Confidence 358999999998887655444 6899999999999998554 44444432 23458999999999999999999987332
Q ss_pred cCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcC----CCCCCCcccEEEE
Q 010111 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT----RGFTLEHLCYLVV 203 (518)
Q Consensus 128 ~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~----~~~~~~~~~~vVi 203 (518)
....+...++....... .......|+|+|.++|...+... ..+.+..+++||+
T Consensus 490 ~~~~~~~i~~i~~L~~~-----------------------~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIi 546 (1123)
T PRK11448 490 GDQTFASIYDIKGLEDK-----------------------FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIV 546 (1123)
T ss_pred cccchhhhhchhhhhhh-----------------------cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEE
Confidence 11111111111110000 11234689999999998765321 1245788999999
Q ss_pred echhHhhhH---------h------HHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCcee
Q 010111 204 DETDRLLRE---------A------YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (518)
Q Consensus 204 DEah~~~~~---------~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (518)
||||+.... + +......++..+. ..
T Consensus 547 DEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFd----------------------------------------A~ 586 (1123)
T PRK11448 547 DEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFD----------------------------------------AV 586 (1123)
T ss_pred ECCCCCCccccccccchhccchhhhHHHHHHHHHhhcC----------------------------------------cc
Confidence 999985310 0 1122233333221 13
Q ss_pred eEEEeEeecCChhhhh--------------hccCC---CCeEEeeCCccc--c--Cccccceee-----e---ecCCC--
Q 010111 269 KMVLSATLTQDPNKLA--------------QLDLH---HPLFLTTGETRY--K--LPERLESYK-----L---ICESK-- 317 (518)
Q Consensus 269 ~i~~SaT~~~~~~~~~--------------~~~~~---~~~~~~~~~~~~--~--~~~~~~~~~-----~---~~~~~-- 317 (518)
.+++|||+......+. ..++. .|..+....... . ....+..+. . ..+..
T Consensus 587 ~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~ 666 (1123)
T PRK11448 587 KIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVD 666 (1123)
T ss_pred EEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCcHHHh
Confidence 4777777653321111 01111 122221100000 0 000000000 0 00000
Q ss_pred ------C-------cH----HHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcC------CCceeEEEccccCChHHH
Q 010111 318 ------L-------KP----LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG------ELRIKIKEYSGLQRQSVR 374 (518)
Q Consensus 318 ------~-------k~----~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~------~~~~~v~~~hg~~~~~~r 374 (518)
. .. ..+...+....++++||||.++++|+.+.+.|.... ..+..+..+||+.+. +
T Consensus 667 ~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~~--~ 744 (1123)
T PRK11448 667 FEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSIDK--P 744 (1123)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCccc--h
Confidence 0 00 011122222235799999999999999999887531 112345678888864 7
Q ss_pred HHHHHHHhcCCc-eEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCC
Q 010111 375 SKTLKAFREGKI-QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430 (518)
Q Consensus 375 ~~~~~~f~~g~~-~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g 430 (518)
..++++|+++.. .|+|+++++.+|+|+|.+.+||+++++.|...|+||+||+.|..
T Consensus 745 ~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 745 DQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred HHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 789999999887 68999999999999999999999999999999999999999964
No 95
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=1.5e-28 Score=247.82 Aligned_cols=294 Identities=19% Similarity=0.216 Sum_probs=187.7
Q ss_pred EEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCC
Q 010111 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152 (518)
Q Consensus 73 li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~ 152 (518)
|+.||||||||.+|+..+...+.. +.++||++|+++|+.|+++.+++.+ +.++.+++|+.+..++...
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~----g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~----- 68 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL----GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQA----- 68 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHH-----
Confidence 468999999999987765555443 3479999999999999999998753 5678888988876655433
Q ss_pred ccccCccCCchhHHHhh-cCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHh---HHHHHHHhcccc
Q 010111 153 KLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA---WLPTVLQLTRSD 228 (518)
Q Consensus 153 ~~~~~~~~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~---~~~~i~~~~~~~ 228 (518)
|..+ ...++|+|+|+..++ ..+.++++||+||+|...-.+... ....+.....
T Consensus 69 -------------~~~~~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra-- 125 (505)
T TIGR00595 69 -------------WRKVKNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRA-- 125 (505)
T ss_pred -------------HHHHHcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHH--
Confidence 2223 345799999998763 246779999999999764221100 0011110000
Q ss_pred cccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCc--cccCccc
Q 010111 229 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET--RYKLPER 306 (518)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 306 (518)
.....+.+++|||++.+...... ............ ....| .
T Consensus 126 ----------------------------------~~~~~~vil~SATPsles~~~~~--~g~~~~~~l~~r~~~~~~p-~ 168 (505)
T TIGR00595 126 ----------------------------------KKFNCPVVLGSATPSLESYHNAK--QKAYRLLVLTRRVSGRKPP-E 168 (505)
T ss_pred ----------------------------------HhcCCCEEEEeCCCCHHHHHHHh--cCCeEEeechhhhcCCCCC-e
Confidence 00223789999996533222221 111111111110 00111 1
Q ss_pred cceeeeecCC--CCcHHHHHHHHH-hc-CCCcEEEEcCChhh--------------------------------------
Q 010111 307 LESYKLICES--KLKPLYLVALLQ-SL-GEEKCIVFTSSVES-------------------------------------- 344 (518)
Q Consensus 307 ~~~~~~~~~~--~~k~~~l~~~l~-~~-~~~~~lVf~~s~~~-------------------------------------- 344 (518)
+......... ..-...+...++ .. .++++|||+|++-.
T Consensus 169 v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~ 248 (505)
T TIGR00595 169 VKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGY 248 (505)
T ss_pred EEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcC
Confidence 1111000000 011123444443 22 35689999766432
Q ss_pred ----------------------HHHHHHHHhhcCCCceeEEEccccCChHHH--HHHHHHHhcCCceEEEEcCccccCCC
Q 010111 345 ----------------------THRLCTLLNHFGELRIKIKEYSGLQRQSVR--SKTLKAFREGKIQVLVSSDAMTRGMD 400 (518)
Q Consensus 345 ----------------------~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r--~~~~~~f~~g~~~vLvaT~~~~~GiD 400 (518)
.+++.+.|.+.. .+.++..+|++++...+ +.+++.|++|+.+|||+|+++++|+|
T Consensus 249 ~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~f-p~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d 327 (505)
T TIGR00595 249 QEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLF-PGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHH 327 (505)
T ss_pred cCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhC-CCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCC
Confidence 477778887652 35789999999987766 89999999999999999999999999
Q ss_pred CCCCCEEEEc--CC----CC------CccchhhhhhhcccCCCCCcEEEEe
Q 010111 401 VEGVNNVVNY--DK----PA------YIKTYIHRAGRTARAGQLGRCFTLL 439 (518)
Q Consensus 401 ip~v~~VI~~--~~----p~------s~~~~~Qr~GR~gR~g~~g~~~~~~ 439 (518)
+|++++|+.+ |. |. ....|.|++||+||.++.|.+++..
T Consensus 328 ~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt 378 (505)
T TIGR00595 328 FPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQT 378 (505)
T ss_pred CCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEe
Confidence 9999988644 43 21 1346899999999999999988655
No 96
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=6.6e-28 Score=247.26 Aligned_cols=371 Identities=17% Similarity=0.212 Sum_probs=239.5
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
+|. .|+++|. +..+.-++.-+..++||.|||+++.+|++.+...+ ..+.|++|+.+||.|..+++..+.
T Consensus 79 lgm-~~ydVQl------iGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~g----~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 79 FEM-RHFDVQL------LGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTG----KGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred hCC-CcCchHH------hcchHhcCCccccccCCCCchHHHHHHHHHHHhcC----CCEEEEeCCHHHHHHHHHHHHHHH
Confidence 454 7888885 33333456679999999999999999999776654 259999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHhHhcCCCCCC-----Cccc
Q 010111 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRGFTL-----EHLC 199 (518)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~~~~~-----~~~~ 199 (518)
..+|++++++.++.+..... -...+||+++||+.| ++++...-.... ..+.
T Consensus 148 ~~lGlsv~~i~~~~~~~~r~-----------------------~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~ 204 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQEKK-----------------------AAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLH 204 (908)
T ss_pred HhcCCeEEEecCCCCHHHHH-----------------------hcCCCCeEEeCCCcccchhhhccCccchhhhhccccc
Confidence 99999999999988764432 224689999999999 888876423333 7789
Q ss_pred EEEEechhHhhhHh----------------HHhHHHHHHHhcccccc---------cccC-----------Ccc-----c
Q 010111 200 YLVVDETDRLLREA----------------YQAWLPTVLQLTRSDNE---------NRFS-----------DAS-----T 238 (518)
Q Consensus 200 ~vViDEah~~~~~~----------------~~~~~~~i~~~~~~~~~---------~~~~-----------~~~-----~ 238 (518)
++|+||||.++-+. .+..+..+...+..... ..+. +.+ .
T Consensus 205 ~aIvDEvDsiLiDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~ 284 (908)
T PRK13107 205 YALIDEVDSILIDEARTPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVEN 284 (908)
T ss_pred eeeecchhhhccccCCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHH
Confidence 99999999875321 22222222222211000 0000 000 0
Q ss_pred cc---------cccc------------ccchhhhc--------------------ccc---ccCCCC-----------CC
Q 010111 239 FL---------PSAF------------GSLKTIRR--------------------CGV---ERGFKD-----------KP 263 (518)
Q Consensus 239 ~~---------~~~~------------~~~~~~~~--------------------~~~---~~~~~~-----------~~ 263 (518)
.+ ...+ ..+..... ++. .+.+.+ ..
T Consensus 285 ~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~ 364 (908)
T PRK13107 285 LLIERGMLAEGDSLYSAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVH 364 (908)
T ss_pred HHHhCCcccCcccccCchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCC
Confidence 00 0000 00000000 000 000000 00
Q ss_pred C-Cc----------------eeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHH
Q 010111 264 Y-PR----------------LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 326 (518)
Q Consensus 264 ~-~~----------------~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 326 (518)
. +. .+...||+|......++...+-...+.+.+... ....... -.+......|...+...
T Consensus 365 I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp--~~R~d~~-d~iy~t~~~K~~Aii~e 441 (908)
T PRK13107 365 IQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRP--MVRKDMA-DLVYLTADEKYQAIIKD 441 (908)
T ss_pred CCCCceeeeeehHHHHHHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCCC--ccceeCC-CcEEeCHHHHHHHHHHH
Confidence 0 00 012345555444333333333222222222111 1111111 11223345566666555
Q ss_pred HH--hcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCC-
Q 010111 327 LQ--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG- 403 (518)
Q Consensus 327 l~--~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~- 403 (518)
+. ...+.++||||.|+..++.+++.|...+ +++..+|+.+++.++..+.+.|+.|. |+|||++++||+||.-
T Consensus 442 i~~~~~~GrpVLV~t~sv~~se~ls~~L~~~g---i~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLg 516 (908)
T PRK13107 442 IKDCRERGQPVLVGTVSIEQSELLARLMVKEK---IPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLG 516 (908)
T ss_pred HHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCC---CCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecC
Confidence 54 2357899999999999999999999876 89999999999999999999999997 9999999999999971
Q ss_pred ------------------------------------CCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchhHHH
Q 010111 404 ------------------------------------VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLV 447 (518)
Q Consensus 404 ------------------------------------v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~ 447 (518)
==+||-...+.|..--.|-.||+||.|.+|.+..|++-+|--+-
T Consensus 517 gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~r 596 (908)
T PRK13107 517 GNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLMR 596 (908)
T ss_pred CchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHHH
Confidence 12788899999998889999999999999999999997775331
Q ss_pred ----HHHHHHHHhhc
Q 010111 448 ----KRFKKLLQKAD 458 (518)
Q Consensus 448 ----~~~~~~l~~~~ 458 (518)
+++.+++....
T Consensus 597 ~f~~~~~~~~~~~~~ 611 (908)
T PRK13107 597 IFASDRVSGMMKKLG 611 (908)
T ss_pred HhChHHHHHHHHHcC
Confidence 44556665543
No 97
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.96 E-value=8e-28 Score=215.87 Aligned_cols=309 Identities=20% Similarity=0.195 Sum_probs=212.7
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccC
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 129 (518)
++++.|+.|-..++..+.+.++.++.|-||+|||.... +.++...+ .|.++.+.+|....+..++..++.-.. +
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif-~~i~~al~---~G~~vciASPRvDVclEl~~Rlk~aF~--~ 170 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIF-QGIEQALN---QGGRVCIASPRVDVCLELYPRLKQAFS--N 170 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhH-HHHHHHHh---cCCeEEEecCcccchHHHHHHHHHhhc--c
Confidence 79999999988888888888999999999999998743 34444443 255899999999999999988887654 4
Q ss_pred ceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHh
Q 010111 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (518)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~ 209 (518)
..+.+++|+++..- ...++|+|..+|+..-.. ++++|+||+|.+
T Consensus 171 ~~I~~Lyg~S~~~f----------------------------r~plvVaTtHQLlrFk~a--------FD~liIDEVDAF 214 (441)
T COG4098 171 CDIDLLYGDSDSYF----------------------------RAPLVVATTHQLLRFKQA--------FDLLIIDEVDAF 214 (441)
T ss_pred CCeeeEecCCchhc----------------------------cccEEEEehHHHHHHHhh--------ccEEEEeccccc
Confidence 67788898876332 258999998888776554 889999999965
Q ss_pred hhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCC
Q 010111 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289 (518)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~ 289 (518)
--.. ...+..-.+.-.. ..-..|++|||++.....-......
T Consensus 215 P~~~-d~~L~~Av~~ark-------------------------------------~~g~~IylTATp~k~l~r~~~~g~~ 256 (441)
T COG4098 215 PFSD-DQSLQYAVKKARK-------------------------------------KEGATIYLTATPTKKLERKILKGNL 256 (441)
T ss_pred cccC-CHHHHHHHHHhhc-------------------------------------ccCceEEEecCChHHHHHHhhhCCe
Confidence 2110 0111111111000 1114689999988666554443333
Q ss_pred CCeEEeeCCccccCccccceeeeecCCCCcH------HHHHHHHHhc--CCCcEEEEcCChhhHHHHHHHHhhcCCCcee
Q 010111 290 HPLFLTTGETRYKLPERLESYKLICESKLKP------LYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIK 361 (518)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~------~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~ 361 (518)
.++.+.... ...|-.+..+....+...+. ..|...++.. .+.+++||+++++..+.++..|+..- ....
T Consensus 257 ~~~klp~Rf--H~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~-~~~~ 333 (441)
T COG4098 257 RILKLPARF--HGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKL-PKET 333 (441)
T ss_pred eEeecchhh--cCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhC-Cccc
Confidence 333332222 22233344444443333322 2456666543 46799999999999999999995432 2345
Q ss_pred EEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCC--CCccchhhhhhhcccCC-C-CCcEEE
Q 010111 362 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP--AYIKTYIHRAGRTARAG-Q-LGRCFT 437 (518)
Q Consensus 362 v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p--~s~~~~~Qr~GR~gR~g-~-~g~~~~ 437 (518)
++.+|+.. ..|.+..++|++|++++||+|.+++||+.+|++++.+.-.-- -+.+.++|..||+||.- + .|.+..
T Consensus 334 i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~F 411 (441)
T COG4098 334 IASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLF 411 (441)
T ss_pred eeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEE
Confidence 67778754 459999999999999999999999999999999986654322 45678999999999964 2 466655
Q ss_pred Eeecch
Q 010111 438 LLHKDE 443 (518)
Q Consensus 438 ~~~~~e 443 (518)
|-.-..
T Consensus 412 FH~G~s 417 (441)
T COG4098 412 FHYGKS 417 (441)
T ss_pred Eeccch
Confidence 544333
No 98
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.96 E-value=3.9e-28 Score=219.53 Aligned_cols=197 Identities=31% Similarity=0.502 Sum_probs=166.9
Q ss_pred CCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcc-cCCccEEEEcCcHH
Q 010111 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRD 112 (518)
Q Consensus 34 ~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~-~~~~~~lil~Pt~~ 112 (518)
++++.+.+.+.++|+..|+++|.++++.+.. |+|+++++|||+|||++|++|+++.+.... ..+++++|++|+++
T Consensus 5 ~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 5 GLSPELLRGIYALGFEKPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 3899999999999999999999999988775 899999999999999999999999887752 24678999999999
Q ss_pred HHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCC
Q 010111 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (518)
Q Consensus 113 La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~ 192 (518)
|+.|+.+.++.+....++++..++|+.+..+.... ...+++|+|+||+.+.+.+.+ ..
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~iiv~T~~~l~~~l~~-~~ 138 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRK---------------------LKRGPHIVVATPGRLLDLLER-GK 138 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---------------------hcCCCCEEEEChHHHHHHHHc-CC
Confidence 99999999999988778999999998876554332 235789999999999998887 44
Q ss_pred CCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEE
Q 010111 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (518)
Q Consensus 193 ~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (518)
..+.+++++|+||+|.+.+.++...+..+...+.. ..+.+++
T Consensus 139 ~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~--------------------------------------~~~~~~~ 180 (203)
T cd00268 139 LDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPK--------------------------------------DRQTLLF 180 (203)
T ss_pred CChhhCCEEEEeChHHhhccChHHHHHHHHHhCCc--------------------------------------ccEEEEE
Confidence 77889999999999999888888888877776542 2388999
Q ss_pred eEeecCChhhhhhccCCCCeEE
Q 010111 273 SATLTQDPNKLAQLDLHHPLFL 294 (518)
Q Consensus 273 SaT~~~~~~~~~~~~~~~~~~~ 294 (518)
|||+++.........+.+|..+
T Consensus 181 SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 181 SATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred eccCCHHHHHHHHHHCCCCEEe
Confidence 9999988888777777776654
No 99
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=1.6e-28 Score=240.24 Aligned_cols=310 Identities=19% Similarity=0.234 Sum_probs=222.1
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccC
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 129 (518)
++.|+|..|+..+- .+.++++.|.|.+|||.++-.++...|... .|++|..|-++|.+|-++++..-+.
T Consensus 129 ~LDpFQ~~aI~Cid----r~eSVLVSAHTSAGKTVVAeYAIA~sLr~k----QRVIYTSPIKALSNQKYREl~~EF~--- 197 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCID----RGESVLVSAHTSAGKTVVAEYAIAMSLREK----QRVIYTSPIKALSNQKYRELLEEFK--- 197 (1041)
T ss_pred ccCchHhhhhhhhc----CCceEEEEeecCCCcchHHHHHHHHHHHhc----CeEEeeChhhhhcchhHHHHHHHhc---
Confidence 67899999865543 589999999999999999999888888764 3899999999999999988876443
Q ss_pred ceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHh
Q 010111 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (518)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~ 209 (518)
.|++.+|+.+. ..++.-+|+|.+.|.+++.++ .--+..+.+||+||+|.|
T Consensus 198 -DVGLMTGDVTI----------------------------nP~ASCLVMTTEILRsMLYRG-SEvmrEVaWVIFDEIHYM 247 (1041)
T KOG0948|consen 198 -DVGLMTGDVTI----------------------------NPDASCLVMTTEILRSMLYRG-SEVMREVAWVIFDEIHYM 247 (1041)
T ss_pred -ccceeecceee----------------------------CCCCceeeeHHHHHHHHHhcc-chHhheeeeEEeeeehhc
Confidence 36677787653 345689999999999999884 345788999999999999
Q ss_pred hhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhc--c
Q 010111 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL--D 287 (518)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~--~ 287 (518)
-|..++-..++-+=+++ +.++.+++|||+|+......|. .
T Consensus 248 RDkERGVVWEETIIllP--------------------------------------~~vr~VFLSATiPNA~qFAeWI~~i 289 (1041)
T KOG0948|consen 248 RDKERGVVWEETIILLP--------------------------------------DNVRFVFLSATIPNARQFAEWICHI 289 (1041)
T ss_pred cccccceeeeeeEEecc--------------------------------------ccceEEEEeccCCCHHHHHHHHHHH
Confidence 77766543333222222 3347899999998765554432 2
Q ss_pred CCCCeEEeeCCccccCcccccee---------eeecCCCCcH-----H--------------------------------
Q 010111 288 LHHPLFLTTGETRYKLPERLESY---------KLICESKLKP-----L-------------------------------- 321 (518)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~k~-----~-------------------------------- 321 (518)
-..|..+...+ ..|..+++| +.++++..++ .
T Consensus 290 hkQPcHVVYTd---yRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~ 366 (1041)
T KOG0948|consen 290 HKQPCHVVYTD---YRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGP 366 (1041)
T ss_pred hcCCceEEeec---CCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCC
Confidence 23444432221 112233333 2222222111 1
Q ss_pred ------HHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCC------------------------------------Cc
Q 010111 322 ------YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE------------------------------------LR 359 (518)
Q Consensus 322 ------~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~------------------------------------~~ 359 (518)
.+...+-.....++|||+-|++.|+.++-.+.+... +.
T Consensus 367 ~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~ 446 (1041)
T KOG0948|consen 367 GDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLR 446 (1041)
T ss_pred CcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHH
Confidence 111112222346899999999999999988866321 11
Q ss_pred eeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEE----cC----CCCCccchhhhhhhcccCCC
Q 010111 360 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----YD----KPAYIKTYIHRAGRTARAGQ 431 (518)
Q Consensus 360 ~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~~----~p~s~~~~~Qr~GR~gR~g~ 431 (518)
-.+.++|||+-+--++.+.-.|..|-+++|+||.+++.|+|.|.-++|+- || ..-|...|+||.|||||.|.
T Consensus 447 RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~ 526 (1041)
T KOG0948|consen 447 RGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGI 526 (1041)
T ss_pred hccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCC
Confidence 24789999999999999999999999999999999999999996555542 22 12356789999999999995
Q ss_pred --CCcEEEEeec
Q 010111 432 --LGRCFTLLHK 441 (518)
Q Consensus 432 --~g~~~~~~~~ 441 (518)
.|.|++++++
T Consensus 527 DdrGivIlmiDe 538 (1041)
T KOG0948|consen 527 DDRGIVILMIDE 538 (1041)
T ss_pred CCCceEEEEecC
Confidence 5788888864
No 100
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.96 E-value=5.4e-28 Score=243.84 Aligned_cols=355 Identities=20% Similarity=0.236 Sum_probs=242.6
Q ss_pred CCHHHHHH-HHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHH
Q 010111 35 LDPRLKVA-LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (518)
Q Consensus 35 l~~~~~~~-l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~L 113 (518)
+.+..... .+..|...++.||.+|+. ++.++.++|.+..+||+.|||+++-+-++..+.-. +..++.+.|..+.
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls--~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~---rr~~llilp~vsi 281 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLS--LPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR---RRNVLLILPYVSI 281 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhc--chhhhcccceEEeCCCccchHHHHHHHHHHHHHHH---hhceeEecceeeh
Confidence 44444443 445688999999999973 56667789999999999999999999888776543 2368999999998
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcC-CC
Q 010111 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT-RG 192 (518)
Q Consensus 114 a~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~ 192 (518)
+..-...+..+....|+++..++|..+.... .+.-.+.|||.++-..++.+. ..
T Consensus 282 v~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~-------------------------~k~~sv~i~tiEkanslin~lie~ 336 (1008)
T KOG0950|consen 282 VQEKISALSPFSIDLGFPVEEYAGRFPPEKR-------------------------RKRESVAIATIEKANSLINSLIEQ 336 (1008)
T ss_pred hHHHHhhhhhhccccCCcchhhcccCCCCCc-------------------------ccceeeeeeehHhhHhHHHHHHhc
Confidence 8888888888888899999999887654332 234589999998755444321 01
Q ss_pred CCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEE
Q 010111 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (518)
Q Consensus 193 ~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (518)
-.+..+.+||+||.|.+.+.+.+..++.++..+--.+.. ..+|.|.|
T Consensus 337 g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~---------------------------------~~~~iIGM 383 (1008)
T KOG0950|consen 337 GRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLE---------------------------------TSVQIIGM 383 (1008)
T ss_pred CCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccc---------------------------------cceeEeee
Confidence 136679999999999999999999999998876432211 11488999
Q ss_pred eEeecCChhh--hhhccCCCCeEEeeCCccccCccccc----------eee---eecCCCCcHHHHHHHHHhc--CCCcE
Q 010111 273 SATLTQDPNK--LAQLDLHHPLFLTTGETRYKLPERLE----------SYK---LICESKLKPLYLVALLQSL--GEEKC 335 (518)
Q Consensus 273 SaT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~---~~~~~~~k~~~l~~~l~~~--~~~~~ 335 (518)
|||+++...- +.........+-.+...++..+...- .+. .........+.+..++.+. ++.++
T Consensus 384 SATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~ 463 (1008)
T KOG0950|consen 384 SATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSV 463 (1008)
T ss_pred ecccCChHHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeE
Confidence 9999754321 11111111101111111111111000 000 0000000001111111111 23569
Q ss_pred EEEcCChhhHHHHHHHHhhcC-----------------------------------CCceeEEEccccCChHHHHHHHHH
Q 010111 336 IVFTSSVESTHRLCTLLNHFG-----------------------------------ELRIKIKEYSGLQRQSVRSKTLKA 380 (518)
Q Consensus 336 lVf~~s~~~~~~l~~~L~~~~-----------------------------------~~~~~v~~~hg~~~~~~r~~~~~~ 380 (518)
||||++++.|+.++..+...- ...+.++++|++++.++|+.+...
T Consensus 464 lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~a 543 (1008)
T KOG0950|consen 464 LVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAA 543 (1008)
T ss_pred EEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHH
Confidence 999999999999987664410 023568999999999999999999
Q ss_pred HhcCCceEEEEcCccccCCCCCCCCEEEEcC----CCCCccchhhhhhhcccCCC--CCcEEEEeecchhHHHHHHHHHH
Q 010111 381 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYD----KPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEVCLVKRFKKLL 454 (518)
Q Consensus 381 f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~----~p~s~~~~~Qr~GR~gR~g~--~g~~~~~~~~~e~~~~~~~~~~l 454 (518)
|+.|.+.|++||+.++.|+|+|..+++|-.- ...+..+|.||+|||||+|- .|.++.++.+.|. +.+.+++
T Consensus 544 fr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~---~~~~~lv 620 (1008)
T KOG0950|consen 544 FREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEK---KRVRELV 620 (1008)
T ss_pred HHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccch---hHHHHHH
Confidence 9999999999999999999999888777432 22356689999999999984 6899999999987 3444444
Q ss_pred H
Q 010111 455 Q 455 (518)
Q Consensus 455 ~ 455 (518)
.
T Consensus 621 ~ 621 (1008)
T KOG0950|consen 621 N 621 (1008)
T ss_pred h
Confidence 3
No 101
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.95 E-value=8.8e-26 Score=239.71 Aligned_cols=357 Identities=20% Similarity=0.183 Sum_probs=214.7
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccC
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 129 (518)
.|++||.+++..++.....|.++|++..+|.|||+..+. ++..+.........+|||||. .+..||.+++.++++ .
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p--~ 244 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCP--V 244 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCC--C
Confidence 789999999887765445678899999999999997544 444444322233468999998 667889999999986 3
Q ss_pred ceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHh
Q 010111 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (518)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~ 209 (518)
+++..++|........... .......+|+|+|++.+...... +.--.+++||+||||++
T Consensus 245 l~v~~~~G~~~eR~~~~~~------------------~~~~~~~dVvITSYe~l~~e~~~---L~k~~W~~VIvDEAHrI 303 (1033)
T PLN03142 245 LRAVKFHGNPEERAHQREE------------------LLVAGKFDVCVTSFEMAIKEKTA---LKRFSWRYIIIDEAHRI 303 (1033)
T ss_pred CceEEEeCCHHHHHHHHHH------------------HhcccCCCcceecHHHHHHHHHH---hccCCCCEEEEcCcccc
Confidence 6677777765432221110 01124579999999998664432 22234789999999998
Q ss_pred hhHhHHhHHHHHHHhcccccccccCCccccc---------------ccccccchhhh----------------------c
Q 010111 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFL---------------PSAFGSLKTIR----------------------R 252 (518)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~----------------------~ 252 (518)
-+.... +...+..+.....- ...++.+ +..+.....+. .
T Consensus 304 KN~~Sk--lskalr~L~a~~RL--LLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~ 379 (1033)
T PLN03142 304 KNENSL--LSKTMRLFSTNYRL--LITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLR 379 (1033)
T ss_pred CCHHHH--HHHHHHHhhcCcEE--EEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhh
Confidence 664321 22222222211110 0011111 11111100000 0
Q ss_pred cccccCCCC---CCCCceeeEEEeEeecCChhhhhh---------------------------ccCCCCeEEeeCCcccc
Q 010111 253 CGVERGFKD---KPYPRLVKMVLSATLTQDPNKLAQ---------------------------LDLHHPLFLTTGETRYK 302 (518)
Q Consensus 253 ~~~~~~~~~---~~~~~~~~i~~SaT~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~ 302 (518)
....+..+. ...|......+...++..-..+.. ..+.+|..+......
T Consensus 380 pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~-- 457 (1033)
T PLN03142 380 PFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPG-- 457 (1033)
T ss_pred HHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhccccc--
Confidence 000000000 011111222222222111110000 011112111100000
Q ss_pred CccccceeeeecCCCCcHHHHHHHHHhc--CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHH
Q 010111 303 LPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 380 (518)
Q Consensus 303 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~ 380 (518)
+... ..........|...|..++... .+.++|||+......+.+.++|...+ +....+||+++..+|..+++.
T Consensus 458 -~~~~-~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g---~~y~rIdGsts~~eRq~~Id~ 532 (1033)
T PLN03142 458 -PPYT-TGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRG---YQYCRIDGNTGGEDRDASIDA 532 (1033)
T ss_pred -Cccc-chhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHH
Confidence 0000 0001122346677777777643 46799999999999999999998665 889999999999999999999
Q ss_pred HhcC---CceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcE--EEEeecc
Q 010111 381 FREG---KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC--FTLLHKD 442 (518)
Q Consensus 381 f~~g---~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~~ 442 (518)
|... ..-+|++|.+++.|||+..+++||+||++|++....|++||+.|.|+...| +.|++.+
T Consensus 533 Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 533 FNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred hccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 9753 235689999999999999999999999999999999999999999987654 4455543
No 102
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=1.1e-24 Score=224.65 Aligned_cols=140 Identities=19% Similarity=0.237 Sum_probs=118.0
Q ss_pred cCCCCcHHHHHHHHHhc--CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEE
Q 010111 314 CESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391 (518)
Q Consensus 314 ~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLva 391 (518)
.....|...+...+... .+.++||||+|+..++.+++.|...+ +++.++|+ .+.+|+..+..|+.+...|+||
T Consensus 578 ~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~g---I~h~vLna--kq~~REa~Iia~AG~~g~VtIA 652 (1025)
T PRK12900 578 KTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKR---IAHNVLNA--KQHDREAEIVAEAGQKGAVTIA 652 (1025)
T ss_pred cCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcC---CCceeecC--CHHHhHHHHHHhcCCCCeEEEe
Confidence 34456777888877543 67899999999999999999999876 88999997 5778999999999999999999
Q ss_pred cCccccCCCCC---CCC-----EEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchhHHH----HHHHHHHHhhc
Q 010111 392 SDAMTRGMDVE---GVN-----NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLV----KRFKKLLQKAD 458 (518)
Q Consensus 392 T~~~~~GiDip---~v~-----~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~----~~~~~~l~~~~ 458 (518)
|++++||+||+ +|. +||+++.|.|...|.|++||+||.|.+|.+++|++.+|.-+- +++.+++....
T Consensus 653 TNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr~f~~~~i~~~~~~~~ 731 (1025)
T PRK12900 653 TNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFGSDRVISVMDRLG 731 (1025)
T ss_pred ccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHHhhCcHHHHHHHHHcC
Confidence 99999999999 443 459999999999999999999999999999999998775321 24556665543
No 103
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.93 E-value=9.1e-24 Score=227.86 Aligned_cols=401 Identities=19% Similarity=0.197 Sum_probs=225.0
Q ss_pred CCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHH
Q 010111 33 PCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (518)
Q Consensus 33 ~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~ 112 (518)
+.+++.+.+.+...|| +++|.|.+.+..+.+.+..++++++.||||+|||++|++|++..... +.+++|.+||++
T Consensus 229 ~~~~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~----~~~vvi~t~t~~ 303 (850)
T TIGR01407 229 NTLSSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT----EKPVVISTNTKV 303 (850)
T ss_pred ccccHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC----CCeEEEEeCcHH
Confidence 3466788889988999 58999999888777777788999999999999999999999887652 337999999999
Q ss_pred HHHHHHH-HHHHhccccC--ceEEEeecCCchHHH--HHHhhcC-----------------------Ccc-c--------
Q 010111 113 LALQVKD-VFAAIAPAVG--LSVGLAVGQSSIADE--ISELIKR-----------------------PKL-E-------- 155 (518)
Q Consensus 113 La~Q~~~-~~~~~~~~~~--~~v~~~~g~~~~~~~--~~~~~~~-----------------------~~~-~-------- 155 (518)
|..|+.. .+..+.+.++ +++.++.|..++-.. ..+.... +.. +
T Consensus 304 Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~ 383 (850)
T TIGR01407 304 LQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNK 383 (850)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcch
Confidence 9999864 6666655444 888888887754111 0000000 000 0
Q ss_pred -----------cCccC-----CchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhH-----
Q 010111 156 -----------AGICY-----DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY----- 214 (518)
Q Consensus 156 -----------~~~~~-----~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~----- 214 (518)
.+..+ -+-...+.....+||+|+++..|++.+..... .+...+++||||||++.+...
T Consensus 384 ~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~-ilp~~~~lIiDEAH~L~d~a~~~~~~ 462 (850)
T TIGR01407 384 MFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPE-LFPSFRDLIIDEAHHLPDIAENQLQE 462 (850)
T ss_pred hhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccc-cCCCCCEEEEECcchHHHHHHHHhcc
Confidence 00000 01222344456789999999999887754322 345568999999998864321
Q ss_pred -------HhHHHHHH------------Hhccc---ccccccC-----------------------Cc-cccc--------
Q 010111 215 -------QAWLPTVL------------QLTRS---DNENRFS-----------------------DA-STFL-------- 240 (518)
Q Consensus 215 -------~~~~~~i~------------~~~~~---~~~~~~~-----------------------~~-~~~~-------- 240 (518)
...+..+. ..+.. .....+. .. ....
T Consensus 463 ~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~ 542 (850)
T TIGR01407 463 ELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDL 542 (850)
T ss_pred eeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 11111110 00000 0000000 00 0000
Q ss_pred -----------------ccccccch-------hhhccccc--cCCCCCCC-CceeeEEEeEeecCC--hhhhhh-ccCCC
Q 010111 241 -----------------PSAFGSLK-------TIRRCGVE--RGFKDKPY-PRLVKMVLSATLTQD--PNKLAQ-LDLHH 290 (518)
Q Consensus 241 -----------------~~~~~~~~-------~~~~~~~~--~~~~~~~~-~~~~~i~~SaT~~~~--~~~~~~-~~~~~ 290 (518)
..|...-. .+....+. ..+....+ .....+++|||++.. ...+.. ..+..
T Consensus 543 ~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~ 622 (850)
T TIGR01407 543 ALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTD 622 (850)
T ss_pred HHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCc
Confidence 00000000 00000000 00000001 123568999999743 222222 23222
Q ss_pred CeEEeeCCccccCccccceeeee-cC-C--CCcH---HHHHHHHH---hcCCCcEEEEcCChhhHHHHHHHHhhcCC-Cc
Q 010111 291 PLFLTTGETRYKLPERLESYKLI-CE-S--KLKP---LYLVALLQ---SLGEEKCIVFTSSVESTHRLCTLLNHFGE-LR 359 (518)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~-~~-~--~~k~---~~l~~~l~---~~~~~~~lVf~~s~~~~~~l~~~L~~~~~-~~ 359 (518)
........+.+........+... .. . .... ..+...+. ...++++||||+|.+..+.+++.|..... .+
T Consensus 623 ~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~ 702 (850)
T TIGR01407 623 VHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEG 702 (850)
T ss_pred cccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccC
Confidence 21111111111111111111100 00 0 0111 12222221 23467999999999999999999975211 12
Q ss_pred eeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCC--EEEEcCCCC-----------------------
Q 010111 360 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN--NVVNYDKPA----------------------- 414 (518)
Q Consensus 360 ~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~--~VI~~~~p~----------------------- 414 (518)
+.+.. .+.. ..|..++++|++|+..||++|+.+++|||+|+.. .||+..+|-
T Consensus 703 ~~~l~--q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f 779 (850)
T TIGR01407 703 YEVLA--QGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPF 779 (850)
T ss_pred ceEEe--cCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCch
Confidence 33332 2332 4689999999999999999999999999999755 577766552
Q ss_pred -------CccchhhhhhhcccCCCCCcEEEEeecc
Q 010111 415 -------YIKTYIHRAGRTARAGQLGRCFTLLHKD 442 (518)
Q Consensus 415 -------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 442 (518)
....+.|.+||.-|...+..++++++..
T Consensus 780 ~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 780 YDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred HHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 1134579999999987655556566543
No 104
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.93 E-value=7.3e-25 Score=192.20 Aligned_cols=148 Identities=33% Similarity=0.532 Sum_probs=123.9
Q ss_pred chhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCce
Q 010111 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 131 (518)
Q Consensus 52 ~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~ 131 (518)
||+|.++++.+. .++++++.||||+|||+++.+|+++.+.+. +..++++++|+++|++|+.+.+..++...+++
T Consensus 1 t~~Q~~~~~~i~----~~~~~li~aptGsGKT~~~~~~~l~~~~~~--~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAII----SGKNVLISAPTGSGKTLAYILPALNRLQEG--KDARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHH----TTSEEEEECSTTSSHHHHHHHHHHHHHHTT--SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHH----cCCCEEEECCCCCccHHHHHHHHHhhhccC--CCceEEEEeecccccccccccccccccccccc
Confidence 689999999887 489999999999999999999999988775 33489999999999999999999998887889
Q ss_pred EEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhh
Q 010111 132 VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211 (518)
Q Consensus 132 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~ 211 (518)
+..++|+......... .+..+++|+|+||++|.+.+.... ..+.++++||+||+|.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~--------------------~~~~~~~ilv~T~~~l~~~~~~~~-~~~~~~~~iViDE~h~l~~ 133 (169)
T PF00270_consen 75 VVLLHGGQSISEDQRE--------------------VLSNQADILVTTPEQLLDLISNGK-INISRLSLIVIDEAHHLSD 133 (169)
T ss_dssp EEEESTTSCHHHHHHH--------------------HHHTTSSEEEEEHHHHHHHHHTTS-STGTTESEEEEETHHHHHH
T ss_pred cccccccccccccccc--------------------cccccccccccCcchhhccccccc-cccccceeeccCccccccc
Confidence 9999998875533221 234568999999999999998843 4677799999999999988
Q ss_pred HhHHhHHHHHHHhcc
Q 010111 212 EAYQAWLPTVLQLTR 226 (518)
Q Consensus 212 ~~~~~~~~~i~~~~~ 226 (518)
..+...+..++..+.
T Consensus 134 ~~~~~~~~~i~~~~~ 148 (169)
T PF00270_consen 134 ETFRAMLKSILRRLK 148 (169)
T ss_dssp TTHHHHHHHHHHHSH
T ss_pred ccHHHHHHHHHHHhc
Confidence 777777777777653
No 105
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.92 E-value=1.8e-22 Score=208.51 Aligned_cols=134 Identities=21% Similarity=0.269 Sum_probs=117.2
Q ss_pred CCCcHHHHHHHHHhc--CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcC
Q 010111 316 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393 (518)
Q Consensus 316 ~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~ 393 (518)
...+...+...++.. .+.++||||+++..++.+++.|...+ +++..+||++++.+|.++++.|+.|++.|||||+
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~g---i~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~ 500 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELG---IKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN 500 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhc---cceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC
Confidence 345666666666543 46789999999999999999999876 8999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCEEEEcC-----CCCCccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHH
Q 010111 394 AMTRGMDVEGVNNVVNYD-----KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKL 453 (518)
Q Consensus 394 ~~~~GiDip~v~~VI~~~-----~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~ 453 (518)
.+++|+|+|++++||++| .|.+...|+||+||+||. ..|.+++|++..+....+.+.+.
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 999999999999999998 799999999999999998 68999999998766555555544
No 106
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.92 E-value=1.3e-23 Score=222.03 Aligned_cols=349 Identities=17% Similarity=0.152 Sum_probs=213.8
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccC
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 129 (518)
..+++|..++..+......+..+++.||||+|||.+.+.++...+........+++++.|++.+.+++++.++......+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 35899999988777544333388999999999999999999988776322466899999999999999999998765543
Q ss_pred ceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCC-C--CcccEEEEech
Q 010111 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT-L--EHLCYLVVDET 206 (518)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~-~--~~~~~vViDEa 206 (518)
......+|.....-. .. +.. ..................+.++||............+. + =..+++|+||+
T Consensus 275 ~~~~~~h~~~~~~~~-~~----~~~--~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~ 347 (733)
T COG1203 275 VIGKSLHSSSKEPLL-LE----PDQ--DILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEV 347 (733)
T ss_pred cccccccccccchhh-hc----ccc--ccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccH
Confidence 322212333221111 10 000 00000000000111123556666655554322212222 1 12468999999
Q ss_pred hHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhc
Q 010111 207 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 286 (518)
Q Consensus 207 h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~ 286 (518)
|.+.+......+..++..+... ....+++|||+|.........
T Consensus 348 h~~~~~~~~~~l~~~i~~l~~~-------------------------------------g~~ill~SATlP~~~~~~l~~ 390 (733)
T COG1203 348 HLYADETMLAALLALLEALAEA-------------------------------------GVPVLLMSATLPPFLKEKLKK 390 (733)
T ss_pred HhhcccchHHHHHHHHHHHHhC-------------------------------------CCCEEEEecCCCHHHHHHHHH
Confidence 9886664334444444443321 126799999999887766665
Q ss_pred cCCCCeEEeeCCccc-cCccccceeeeecCCCCcH--HHHHHHH-HhcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeE
Q 010111 287 DLHHPLFLTTGETRY-KLPERLESYKLICESKLKP--LYLVALL-QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKI 362 (518)
Q Consensus 287 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~--~~l~~~l-~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v 362 (518)
............... .............+..... ....... ....+.+++|.|||+..|.++++.|+..+. .+
T Consensus 391 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~---~v 467 (733)
T COG1203 391 ALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP---KV 467 (733)
T ss_pred HHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC---CE
Confidence 444333222211100 0000000000000001110 1111111 223467999999999999999999998763 79
Q ss_pred EEccccCChHHHHHHHHHHh----cCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCC--CCCcEE
Q 010111 363 KEYSGLQRQSVRSKTLKAFR----EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG--QLGRCF 436 (518)
Q Consensus 363 ~~~hg~~~~~~r~~~~~~f~----~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g--~~g~~~ 436 (518)
..+||.+...+|.+.++.+. .+...|+|||++++.|+|+. .+++|---.| .+..+||+||++|.| ..|.++
T Consensus 468 ~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~ 544 (733)
T COG1203 468 LLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITELAP--IDSLIQRAGRVNRHGKKENGKIY 544 (733)
T ss_pred EEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeecCCC--HHHHHHHHHHHhhcccccCCcee
Confidence 99999999999999888655 46789999999999999996 6666543333 788999999999999 567777
Q ss_pred EEeecchhHHHH
Q 010111 437 TLLHKDEVCLVK 448 (518)
Q Consensus 437 ~~~~~~e~~~~~ 448 (518)
++..........
T Consensus 545 v~~~~~~~~~~~ 556 (733)
T COG1203 545 VYNDEERGPYLK 556 (733)
T ss_pred EeecccCCCchh
Confidence 777655544333
No 107
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.92 E-value=2.2e-23 Score=216.07 Aligned_cols=306 Identities=22% Similarity=0.274 Sum_probs=204.0
Q ss_pred HhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHH-hccccCceEEEeecCC
Q 010111 61 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA-IAPAVGLSVGLAVGQS 139 (518)
Q Consensus 61 ~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~-~~~~~~~~v~~~~g~~ 139 (518)
.++..+..+.-++|.||||||||...-.-+++.-. ..+..+.+.-|.|--|.-+++.+.. +....|-.|+...-..
T Consensus 57 ~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~---~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe 133 (845)
T COG1643 57 EILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL---GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFE 133 (845)
T ss_pred HHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc---ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEee
Confidence 34444456788999999999999874444444322 2234677777988666666654433 3333333333332221
Q ss_pred chHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHh-hhHhHH-hH
Q 010111 140 SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL-LREAYQ-AW 217 (518)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~-~~~~~~-~~ 217 (518)
+ .......|-++|.|.|+..+.. ...++.+++||+||||.- ++..+. ..
T Consensus 134 ~---------------------------~~s~~Trik~mTdGiLlrei~~--D~~Ls~ys~vIiDEaHERSl~tDilLgl 184 (845)
T COG1643 134 S---------------------------KVSPRTRIKVMTDGILLREIQN--DPLLSGYSVVIIDEAHERSLNTDILLGL 184 (845)
T ss_pred c---------------------------cCCCCceeEEeccHHHHHHHhh--CcccccCCEEEEcchhhhhHHHHHHHHH
Confidence 1 1234568999999999999987 356889999999999953 222221 11
Q ss_pred HHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeC
Q 010111 218 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297 (518)
Q Consensus 218 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 297 (518)
+..++...+ +.++.|+||||+ +.+.+...+..-|++...+
T Consensus 185 lk~~~~~rr--------------------------------------~DLKiIimSATl--d~~rfs~~f~~apvi~i~G 224 (845)
T COG1643 185 LKDLLARRR--------------------------------------DDLKLIIMSATL--DAERFSAYFGNAPVIEIEG 224 (845)
T ss_pred HHHHHhhcC--------------------------------------CCceEEEEeccc--CHHHHHHHcCCCCEEEecC
Confidence 122222111 235889999998 5555555444445443333
Q ss_pred CccccCccccceeee-ecCCCC-cHHHHHHHHH---hcCCCcEEEEcCChhhHHHHHHHHhhc-CCCceeEEEccccCCh
Q 010111 298 ETRYKLPERLESYKL-ICESKL-KPLYLVALLQ---SLGEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQ 371 (518)
Q Consensus 298 ~~~~~~~~~~~~~~~-~~~~~~-k~~~l~~~l~---~~~~~~~lVf~~s~~~~~~l~~~L~~~-~~~~~~v~~~hg~~~~ 371 (518)
. .++ ++.++. ....+. -...+...+. ....+.+|||.+...+.+..++.|.+. ......+..+||.++.
T Consensus 225 R-~fP----Vei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~ 299 (845)
T COG1643 225 R-TYP----VEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSA 299 (845)
T ss_pred C-ccc----eEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCH
Confidence 2 222 222221 111222 2222222222 345789999999999999999999872 1135789999999999
Q ss_pred HHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCC------------------CCCccchhhhhhhcccCCCCC
Q 010111 372 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK------------------PAYIKTYIHRAGRTARAGQLG 433 (518)
Q Consensus 372 ~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~------------------p~s~~~~~Qr~GR~gR~g~~g 433 (518)
++...+++--..|..+|++||++++.+|-||++.+||.-+. |.|.++..||.||+||.+ +|
T Consensus 300 ~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pG 378 (845)
T COG1643 300 EEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PG 378 (845)
T ss_pred HHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC-Cc
Confidence 99999888777787789999999999999999999997543 356778899999999994 99
Q ss_pred cEEEEeecchh
Q 010111 434 RCFTLLHKDEV 444 (518)
Q Consensus 434 ~~~~~~~~~e~ 444 (518)
.|+-++++++.
T Consensus 379 icyRLyse~~~ 389 (845)
T COG1643 379 ICYRLYSEEDF 389 (845)
T ss_pred eEEEecCHHHH
Confidence 99999998665
No 108
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.92 E-value=1.5e-22 Score=205.85 Aligned_cols=319 Identities=21% Similarity=0.247 Sum_probs=192.0
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
.|| .|+..|. .| ...+..|+++-+.||||.|||.--++..+ .+.. .+.++++++||..|+.|+++.+++++
T Consensus 79 ~G~-~~ws~QR-~W---akR~~rg~SFaiiAPTGvGKTTfg~~~sl-~~a~---kgkr~yii~PT~~Lv~Q~~~kl~~~~ 149 (1187)
T COG1110 79 TGF-RPWSAQR-VW---AKRLVRGKSFAIIAPTGVGKTTFGLLMSL-YLAK---KGKRVYIIVPTTTLVRQVYERLKKFA 149 (1187)
T ss_pred hCC-CchHHHH-HH---HHHHHcCCceEEEcCCCCchhHHHHHHHH-HHHh---cCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 455 8999995 33 34455799999999999999964332222 2221 34589999999999999999999998
Q ss_pred cccC-ceEEE-eecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEE
Q 010111 126 PAVG-LSVGL-AVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (518)
Q Consensus 126 ~~~~-~~v~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vVi 203 (518)
...+ ..+.+ +++..+...+...+ .+....+.||+|+|.+-|...+..... -+|++|++
T Consensus 150 e~~~~~~~~~~yh~~l~~~ekee~l-----------------e~i~~gdfdIlitTs~FL~k~~e~L~~---~kFdfifV 209 (1187)
T COG1110 150 EDAGSLDVLVVYHSALPTKEKEEAL-----------------ERIESGDFDILITTSQFLSKRFEELSK---LKFDFIFV 209 (1187)
T ss_pred hhcCCcceeeeeccccchHHHHHHH-----------------HHHhcCCccEEEEeHHHHHhhHHHhcc---cCCCEEEE
Confidence 7766 44443 45554444332211 123345689999998887766655222 35899999
Q ss_pred echhHhhhHhHHhHHHHHHHhcccccccccCC-----cc-cc-cccccccchhhhccccccCCCCCCCCceeeEEEeEee
Q 010111 204 DETDRLLREAYQAWLPTVLQLTRSDNENRFSD-----AS-TF-LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276 (518)
Q Consensus 204 DEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 276 (518)
|++|.++..+ ..+..++.++.-.....-.. .. .. -.+.........+..-.... ..-...-+.++.|||.
T Consensus 210 DDVDA~Lkas--kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~-~~r~k~g~LvvsSATg 286 (1187)
T COG1110 210 DDVDAILKAS--KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVERERE-KKRRKLGILVVSSATG 286 (1187)
T ss_pred ccHHHHHhcc--ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-HhccCCceEEEeeccC
Confidence 9999887654 33333333332111000000 00 00 00000000000000000000 0001122678999997
Q ss_pred cCChhh--hhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCC---hhhHHHHHHH
Q 010111 277 TQDPNK--LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS---VESTHRLCTL 351 (518)
Q Consensus 277 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s---~~~~~~l~~~ 351 (518)
.+.... +....+. +.++... ....++...+... .-...+..+++.. +...|||++. ++.+++++++
T Consensus 287 ~~rg~R~~LfReLlg----FevG~~~-~~LRNIvD~y~~~---~~~e~~~elvk~l-G~GgLIfV~~d~G~e~aeel~e~ 357 (1187)
T COG1110 287 KPRGSRLKLFRELLG----FEVGSGG-EGLRNIVDIYVES---ESLEKVVELVKKL-GDGGLIFVPIDYGREKAEELAEY 357 (1187)
T ss_pred CCCCchHHHHHHHhC----CccCccc-hhhhheeeeeccC---ccHHHHHHHHHHh-CCCeEEEEEcHHhHHHHHHHHHH
Confidence 655422 2221211 1222221 1122232222222 4455566666666 4589999999 9999999999
Q ss_pred HhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcC----ccccCCCCCC-CCEEEEcCCC
Q 010111 352 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD----AMTRGMDVEG-VNNVVNYDKP 413 (518)
Q Consensus 352 L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~----~~~~GiDip~-v~~VI~~~~p 413 (518)
|+..| +++..+|+. ....++.|..|++++||++. ++.||+|+|. +..+|+++.|
T Consensus 358 Lr~~G---i~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 358 LRSHG---INAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred HHhcC---ceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 99877 899999873 36789999999999999875 6899999995 8899998877
No 109
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.91 E-value=1e-22 Score=193.56 Aligned_cols=164 Identities=21% Similarity=0.231 Sum_probs=127.1
Q ss_pred eeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHh--cCCCcEEEEcCChhh
Q 010111 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVES 344 (518)
Q Consensus 267 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~~~ 344 (518)
.|++++|||+.+.-...........++..++ .+.....+.+...+.+-|+.-++. ..+.++||-+-|+++
T Consensus 387 ~q~i~VSATPg~~E~e~s~~~vveQiIRPTG--------LlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 387 PQTIYVSATPGDYELEQSGGNVVEQIIRPTG--------LLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred CCEEEEECCCChHHHHhccCceeEEeecCCC--------CCCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 5789999998644333222111111111111 122222334456666666666653 356899999999999
Q ss_pred HHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCC-----CCCccch
Q 010111 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK-----PAYIKTY 419 (518)
Q Consensus 345 ~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~-----p~s~~~~ 419 (518)
|+.+.++|.+.| +++.++|++...-+|.++++.++.|..+|||.-+.+.+|+|+|.|++|.++|. ..|..++
T Consensus 459 AEdLT~Yl~e~g---ikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SL 535 (663)
T COG0556 459 AEDLTEYLKELG---IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSL 535 (663)
T ss_pred HHHHHHHHHhcC---ceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchH
Confidence 999999999877 99999999999999999999999999999999999999999999999999884 4688899
Q ss_pred hhhhhhcccCCCCCcEEEEeecc
Q 010111 420 IHRAGRTARAGQLGRCFTLLHKD 442 (518)
Q Consensus 420 ~Qr~GR~gR~g~~g~~~~~~~~~ 442 (518)
+|.+|||+|. -.|.++.+.+.-
T Consensus 536 IQtIGRAARN-~~GkvIlYAD~i 557 (663)
T COG0556 536 IQTIGRAARN-VNGKVILYADKI 557 (663)
T ss_pred HHHHHHHhhc-cCCeEEEEchhh
Confidence 9999999997 689999998753
No 110
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.90 E-value=9.6e-21 Score=197.44 Aligned_cols=122 Identities=23% Similarity=0.289 Sum_probs=108.9
Q ss_pred CCcHHHHHHHHHhc--CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc
Q 010111 317 KLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (518)
Q Consensus 317 ~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 394 (518)
..+...+...++.. .+.++||||+++..++.+++.|...+ +++..+||++++.+|..+++.|+.|.+.|+|||++
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~g---i~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~ 505 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELG---IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINL 505 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcc---eeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCH
Confidence 44556666666543 46789999999999999999999866 89999999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEEcCC-----CCCccchhhhhhhcccCCCCCcEEEEeecc
Q 010111 395 MTRGMDVEGVNNVVNYDK-----PAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442 (518)
Q Consensus 395 ~~~GiDip~v~~VI~~~~-----p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 442 (518)
+++|+|+|++++||++|. |.+...|+||+||+||. ..|.+++|++..
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~ 557 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKI 557 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCC
Confidence 999999999999999885 78899999999999996 789999999853
No 111
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.90 E-value=4e-22 Score=196.43 Aligned_cols=360 Identities=19% Similarity=0.228 Sum_probs=228.5
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccC
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 129 (518)
.+++||.+-+..++.....|-|+|+....|.|||+. .++++..+.........-||++|...|.+ |.++|++|++ +
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~~~GPfLVi~P~StL~N-W~~Ef~rf~P--~ 242 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKGIPGPFLVIAPKSTLDN-WMNEFKRFTP--S 242 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcCCCCCeEEEeeHhhHHH-HHHHHHHhCC--C
Confidence 799999999888877666788999999999999986 44556666553332335899999988765 8999999988 5
Q ss_pred ceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHh
Q 010111 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (518)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~ 209 (518)
+++.+++|+........+- -......+|+|+|+++.+..-.- +.--.++++||||||++
T Consensus 243 l~~~~~~Gdk~eR~~~~r~------------------~~~~~~fdV~iTsYEi~i~dk~~---lk~~~W~ylvIDEaHRi 301 (971)
T KOG0385|consen 243 LNVVVYHGDKEERAALRRD------------------IMLPGRFDVCITSYEIAIKDKSF---LKKFNWRYLVIDEAHRI 301 (971)
T ss_pred cceEEEeCCHHHHHHHHHH------------------hhccCCCceEeehHHHHHhhHHH---HhcCCceEEEechhhhh
Confidence 8899999987544332221 11223689999999988654221 22234889999999998
Q ss_pred hhHhHHhHHHHHHHhcccccccccCCc--cc-----------ccccccccchhhhc----------------------cc
Q 010111 210 LREAYQAWLPTVLQLTRSDNENRFSDA--ST-----------FLPSAFGSLKTIRR----------------------CG 254 (518)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~-----------~~~~~~~~~~~~~~----------------------~~ 254 (518)
-+.. ..+..++..+...+.-.+... .. .+|..+.....+.. .-
T Consensus 302 KN~~--s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pF 379 (971)
T KOG0385|consen 302 KNEK--SKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPF 379 (971)
T ss_pred cchh--hHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHH
Confidence 6653 223333333332221111100 00 11111111100000 00
Q ss_pred cccCCC---CCCCCceeeEEEeEeecCChhh-----------------------------hhhccCCCCeEEeeCCcccc
Q 010111 255 VERGFK---DKPYPRLVKMVLSATLTQDPNK-----------------------------LAQLDLHHPLFLTTGETRYK 302 (518)
Q Consensus 255 ~~~~~~---~~~~~~~~~i~~SaT~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 302 (518)
+-+..+ ....|+...+.+-..++..-.. .....+++|..+......
T Consensus 380 lLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg-- 457 (971)
T KOG0385|consen 380 LLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPG-- 457 (971)
T ss_pred HHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCC--
Confidence 000000 0111111222222222111111 112334444444331111
Q ss_pred CccccceeeeecCCCCcHHHHHHHHHhc--CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHH
Q 010111 303 LPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 380 (518)
Q Consensus 303 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~ 380 (518)
.....-...+....|...|..+|... .++++|||..-....+.+.++..-.+ +....+.|+++.++|...++.
T Consensus 458 --~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~---y~ycRiDGSt~~eeR~~aI~~ 532 (971)
T KOG0385|consen 458 --PPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRG---YEYCRLDGSTSHEEREDAIEA 532 (971)
T ss_pred --CCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcC---ceeEeecCCCCcHHHHHHHHh
Confidence 11111122344567888888887744 57899999988888888888877655 899999999999999999999
Q ss_pred HhcCC---ceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCc--EEEEeecch
Q 010111 381 FREGK---IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR--CFTLLHKDE 443 (518)
Q Consensus 381 f~~g~---~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~e 443 (518)
|.... .-.|++|-+.+.|||+..+++||.||..|+|..-+|..-|++|.|+... |+-|++..-
T Consensus 533 fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 533 FNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred cCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccch
Confidence 98654 3348999999999999999999999999999999999999999998765 555566543
No 112
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.90 E-value=8.4e-23 Score=204.60 Aligned_cols=303 Identities=18% Similarity=0.157 Sum_probs=192.6
Q ss_pred CccchhhHHHHHHhhCCCCCC-CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccc
Q 010111 49 SSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (518)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~-~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~ 127 (518)
..++.||..|+..+.+++..| +.+|++++||+|||.++.. ++.+|.+. ....++|+|+-+++|+.|.+..+..+.+.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~-~~~KRVLFLaDR~~Lv~QA~~af~~~~P~ 241 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKS-GWVKRVLFLADRNALVDQAYGAFEDFLPF 241 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhc-chhheeeEEechHHHHHHHHHHHHHhCCC
Confidence 368999999999999888877 4589999999999998655 55555553 24558999999999999999999998765
Q ss_pred cCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcC----CCCCCCcccEEEE
Q 010111 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT----RGFTLEHLCYLVV 203 (518)
Q Consensus 128 ~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~----~~~~~~~~~~vVi 203 (518)
+-....+.+.. ....+.|.++|.+++...+... ..+...++++||+
T Consensus 242 -~~~~n~i~~~~-----------------------------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvI 291 (875)
T COG4096 242 -GTKMNKIEDKK-----------------------------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVI 291 (875)
T ss_pred -ccceeeeeccc-----------------------------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEe
Confidence 22333332221 1124699999999998887653 2355677999999
Q ss_pred echhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChh--
Q 010111 204 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN-- 281 (518)
Q Consensus 204 DEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~-- 281 (518)
||||+-.-..+...+..+-+.. ++++||+.....
T Consensus 292 DEaHRgi~~~~~~I~dYFdA~~--------------------------------------------~gLTATP~~~~d~~ 327 (875)
T COG4096 292 DEAHRGIYSEWSSILDYFDAAT--------------------------------------------QGLTATPKETIDRS 327 (875)
T ss_pred chhhhhHHhhhHHHHHHHHHHH--------------------------------------------HhhccCcccccccc
Confidence 9999876655554333322221 111233222111
Q ss_pred ----------------h-hhhccCCCCeEEee--CC--ccccCcc----------cc--cee-eeecC------CCCcHH
Q 010111 282 ----------------K-LAQLDLHHPLFLTT--GE--TRYKLPE----------RL--ESY-KLICE------SKLKPL 321 (518)
Q Consensus 282 ----------------~-~~~~~~~~~~~~~~--~~--~~~~~~~----------~~--~~~-~~~~~------~~~k~~ 321 (518)
. ....++..+..+.+ .. ....... .+ ... +-..+ -.....
T Consensus 328 T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~ 407 (875)
T COG4096 328 TYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTE 407 (875)
T ss_pred cccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHH
Confidence 1 11111211111111 10 0000000 00 000 00000 001111
Q ss_pred ----HHHHHHHh--cC--CCcEEEEcCChhhHHHHHHHHhhcCCC--ceeEEEccccCChHHHHHHHHHHhc--CCceEE
Q 010111 322 ----YLVALLQS--LG--EEKCIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFRE--GKIQVL 389 (518)
Q Consensus 322 ----~l~~~l~~--~~--~~~~lVf~~s~~~~~~l~~~L~~~~~~--~~~v~~~hg~~~~~~r~~~~~~f~~--g~~~vL 389 (518)
.+...+.. .. -+++||||.+..+|+.+...|...... +--+..+.|+-.+ -+..++.|.. .-.+|.
T Consensus 408 ~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~--~q~~Id~f~~ke~~P~Ia 485 (875)
T COG4096 408 TVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQ--AQALIDNFIDKEKYPRIA 485 (875)
T ss_pred HHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchh--hHHHHHHHHhcCCCCceE
Confidence 22333333 11 469999999999999999999765322 1235566665544 3455666664 346789
Q ss_pred EEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccC
Q 010111 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429 (518)
Q Consensus 390 vaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 429 (518)
|+.+++..|||+|.|.+++++....|...|.||+||+-|.
T Consensus 486 itvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 486 ITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred EehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 9999999999999999999999999999999999999994
No 113
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.90 E-value=7e-22 Score=206.74 Aligned_cols=308 Identities=16% Similarity=0.148 Sum_probs=179.8
Q ss_pred ccchhhHHHHHHhhCCCCC------CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHH
Q 010111 50 SLFPVQVAVWQETIGPGLF------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~------~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 123 (518)
.++++|.+|+..++..+.. .+..++++|||||||++++..+...+.. ....++|||+|+.+|..|+.+.|..
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~--~~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL--LKNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh--cCCCeEEEEECcHHHHHHHHHHHHh
Confidence 3788999999888766543 3679999999999999877655443322 3456899999999999999999998
Q ss_pred hccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhc-CCCcEEEeCChHHHHhHhcC-CCCCCCcc-cE
Q 010111 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINAT-RGFTLEHL-CY 200 (518)
Q Consensus 124 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~-~~ 200 (518)
+.... ..+..+...... .+. ....|+|+|.++|...+... ..+...+. .+
T Consensus 316 ~~~~~------~~~~~s~~~L~~---------------------~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~l 368 (667)
T TIGR00348 316 LQKDC------AERIESIAELKR---------------------LLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVV 368 (667)
T ss_pred hCCCC------CcccCCHHHHHH---------------------HHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEE
Confidence 85311 011111111111 111 23689999999997644321 11222222 28
Q ss_pred EEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCCh
Q 010111 201 LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 280 (518)
Q Consensus 201 vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~ 280 (518)
||+||||+.....+...+. ..++ ....+++|||+....
T Consensus 369 vIvDEaHrs~~~~~~~~l~---~~~p---------------------------------------~a~~lGfTaTP~~~~ 406 (667)
T TIGR00348 369 VIFDEAHRSQYGELAKNLK---KALK---------------------------------------NASFFGFTGTPIFKK 406 (667)
T ss_pred EEEEcCccccchHHHHHHH---hhCC---------------------------------------CCcEEEEeCCCcccc
Confidence 9999999876554443332 2222 114577777764321
Q ss_pred hhh---------------------hhccCCCCeEEeeCCccccCc-cc----cceeeeecCC------------------
Q 010111 281 NKL---------------------AQLDLHHPLFLTTGETRYKLP-ER----LESYKLICES------------------ 316 (518)
Q Consensus 281 ~~~---------------------~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~------------------ 316 (518)
... ......-|+............ .. +.........
T Consensus 407 d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 486 (667)
T TIGR00348 407 DRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTK 486 (667)
T ss_pred cccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHH
Confidence 110 000110111110000000000 00 0000000000
Q ss_pred -----CCcHHHHH-HHHHh------cCCCcEEEEcCChhhHHHHHHHHhhcCCCc--eeEEEccccCChH----------
Q 010111 317 -----KLKPLYLV-ALLQS------LGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQS---------- 372 (518)
Q Consensus 317 -----~~k~~~l~-~~l~~------~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~--~~v~~~hg~~~~~---------- 372 (518)
......+. .+++. ....+++|||.++.+|..+++.|....... .....++++.+..
T Consensus 487 ~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~ 566 (667)
T TIGR00348 487 KILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHI 566 (667)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHh
Confidence 00001111 11111 124799999999999999999987653221 3444555544332
Q ss_pred -----------HHHHHHHHHhc-CCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccC
Q 010111 373 -----------VRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429 (518)
Q Consensus 373 -----------~r~~~~~~f~~-g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 429 (518)
....++++|++ +..+|||+++++..|+|.|.+++++...+..+ ..++|.+||+.|.
T Consensus 567 ~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 567 RTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRI 634 (667)
T ss_pred ccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccc
Confidence 23478889976 68899999999999999999998887776555 4689999999993
No 114
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.90 E-value=1.9e-22 Score=197.42 Aligned_cols=306 Identities=21% Similarity=0.283 Sum_probs=200.6
Q ss_pred HhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcc-cCCccEEEEcCcHHHHHHHHHHH-HHhccccCceEEEeecC
Q 010111 61 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVF-AAIAPAVGLSVGLAVGQ 138 (518)
Q Consensus 61 ~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~-~~~~~~lil~Pt~~La~Q~~~~~-~~~~~~~~~~v~~~~g~ 138 (518)
.++..+..++-++|.|+||||||.. +-+.|...+ ....++.+.-|+|--|.-+++.. .+.....|-.|+...--
T Consensus 58 ~il~~ve~nqvlIviGeTGsGKSTQ----ipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRF 133 (674)
T KOG0922|consen 58 QILYAVEDNQVLIVIGETGSGKSTQ----IPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRF 133 (674)
T ss_pred HHHHHHHHCCEEEEEcCCCCCcccc----HhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEe
Confidence 3454455678899999999999987 334443322 12234777789987776665433 33433334333332221
Q ss_pred CchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHH
Q 010111 139 SSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 218 (518)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~ 218 (518)
.+ .......|.+.|-|.|++.+.. ...++.+++||+||||.- .-..
T Consensus 134 ed---------------------------~ts~~TrikymTDG~LLRE~l~--Dp~LskYsvIIlDEAHER-----sl~T 179 (674)
T KOG0922|consen 134 ED---------------------------STSKDTRIKYMTDGMLLREILK--DPLLSKYSVIILDEAHER-----SLHT 179 (674)
T ss_pred cc---------------------------cCCCceeEEEecchHHHHHHhc--CCccccccEEEEechhhh-----hhHH
Confidence 11 1123458999999999998876 356889999999999953 1111
Q ss_pred HHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCC
Q 010111 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (518)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 298 (518)
.-++.+++.... ..+.++.|++|||+ +...+...+..-|++...+.
T Consensus 180 DiLlGlLKki~~--------------------------------~R~~LklIimSATl--da~kfS~yF~~a~i~~i~GR 225 (674)
T KOG0922|consen 180 DILLGLLKKILK--------------------------------KRPDLKLIIMSATL--DAEKFSEYFNNAPILTIPGR 225 (674)
T ss_pred HHHHHHHHHHHh--------------------------------cCCCceEEEEeeee--cHHHHHHHhcCCceEeecCC
Confidence 122222221100 01335889999998 45555554444444433322
Q ss_pred ccccCccccceeeeecCC-CCc---HHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCC-----CceeEEEccccC
Q 010111 299 TRYKLPERLESYKLICES-KLK---PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE-----LRIKIKEYSGLQ 369 (518)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~-~~k---~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~-----~~~~v~~~hg~~ 369 (518)
.++ ++.++...+. +.- ...+..+....+.+-+|||....++.+.+++.|.+... ...-+..+||.+
T Consensus 226 -~fP----Vei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL 300 (674)
T KOG0922|consen 226 -TFP----VEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGAL 300 (674)
T ss_pred -CCc----eeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccC
Confidence 111 2222222111 111 12233333455678999999999999999999976421 111356799999
Q ss_pred ChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCC------------------CCCccchhhhhhhcccCCC
Q 010111 370 RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK------------------PAYIKTYIHRAGRTARAGQ 431 (518)
Q Consensus 370 ~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~------------------p~s~~~~~Qr~GR~gR~g~ 431 (518)
+.++...+.+.-..|..+|+++|++++..+-||++..||.-+. |-|...-.||.||+||.|
T Consensus 301 ~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~- 379 (674)
T KOG0922|consen 301 PSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG- 379 (674)
T ss_pred CHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-
Confidence 9999999988888899999999999999999999999997443 457778899999999995
Q ss_pred CCcEEEEeecchh
Q 010111 432 LGRCFTLLHKDEV 444 (518)
Q Consensus 432 ~g~~~~~~~~~e~ 444 (518)
+|.|+-++++++.
T Consensus 380 pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 380 PGKCYRLYTESAY 392 (674)
T ss_pred CceEEEeeeHHHH
Confidence 9999999998776
No 115
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=4.1e-21 Score=192.99 Aligned_cols=355 Identities=19% Similarity=0.195 Sum_probs=224.9
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
+|. .|++.|.-+.-.++ +| -++.+.||+|||+++.+|++-+...+ ..+.+++|+-.||.|-++++..+.
T Consensus 75 lg~-r~ydvQlig~l~Ll----~G--~VaEM~TGEGKTLvA~l~a~l~AL~G----~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLL----AG--DVIEMATGEGKTLAGAIAAAGYALQG----RRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred cCC-CcchHHHHHHHHHh----CC--CcccccCCCCHHHHHHHHHHHHHHcC----CCeEEEcCCHHHHHHHHHHHHHHH
Confidence 565 88999987754443 23 47899999999999999998776654 379999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHhHhcC-----CCCCCCccc
Q 010111 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHLC 199 (518)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~-----~~~~~~~~~ 199 (518)
..+|++++++.++.+...+.. ...+||+++|..-| +++|... ...-...+.
T Consensus 144 ~~LGLsvg~i~~~~~~~err~-----------------------aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~ 200 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRA-----------------------AYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPD 200 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHH-----------------------HHcCCCEEcCCcccccccchhhhccChHhhcCCccc
Confidence 999999999999877655432 23579999998765 2333321 112346688
Q ss_pred EEEEechhHhhhH---------------hHHhHHHHHHHhcccccc---------------------------cccCCc-
Q 010111 200 YLVVDETDRLLRE---------------AYQAWLPTVLQLTRSDNE---------------------------NRFSDA- 236 (518)
Q Consensus 200 ~vViDEah~~~~~---------------~~~~~~~~i~~~~~~~~~---------------------------~~~~~~- 236 (518)
+.|+||+|.++=+ ..+..+..+...+..... +.+...
T Consensus 201 faIVDEvDSiLIDeArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~ 280 (764)
T PRK12326 201 VAIIDEADSVLVDEALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEH 280 (764)
T ss_pred eeeecchhhheeccccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcch
Confidence 9999999976421 122223333332221100 000000
Q ss_pred -ccccccccccchhhh---c-----------------ccc---ccCCCC------------------------------C
Q 010111 237 -STFLPSAFGSLKTIR---R-----------------CGV---ERGFKD------------------------------K 262 (518)
Q Consensus 237 -~~~~~~~~~~~~~~~---~-----------------~~~---~~~~~~------------------------------~ 262 (518)
...+......+.... + ++. .+.+.+ .
T Consensus 281 ~~~~~~~i~~AL~A~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr 360 (764)
T PRK12326 281 VGTTLTQVNVALHAHALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIG 360 (764)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHH
Confidence 000000000000000 0 000 000000 0
Q ss_pred CCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHh--cCCCcEEEEcC
Q 010111 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTS 340 (518)
Q Consensus 263 ~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~ 340 (518)
.| .....||+|......++...+-...+.+..... ...... .-.+......|...+...+.. ..+.|+||.|.
T Consensus 361 ~Y--~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtnkp--~~R~d~-~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~ 435 (764)
T PRK12326 361 RY--PTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKP--NIREDE-ADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTH 435 (764)
T ss_pred hc--chheeecCCChhHHHHHHHHhCCcEEECCCCCC--ceeecC-CCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 00 124678888766666665544444333322211 111111 112233345566666555442 35789999999
Q ss_pred ChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCC---------------CC
Q 010111 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG---------------VN 405 (518)
Q Consensus 341 s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~---------------v~ 405 (518)
|++..+.+++.|...+ ++..++++.....+-..+-++-+.| .|.|||++++||.||.- ==
T Consensus 436 sI~~SE~ls~~L~~~g---I~h~vLNAk~~~~EA~IIa~AG~~g--aVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGL 510 (764)
T PRK12326 436 DVAESEELAERLRAAG---VPAVVLNAKNDAEEARIIAEAGKYG--AVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGL 510 (764)
T ss_pred CHHHHHHHHHHHHhCC---CcceeeccCchHhHHHHHHhcCCCC--cEEEEecCCCCccCeecCCCcccchHHHHHcCCc
Confidence 9999999999999876 7888888875554433333333333 78999999999999972 12
Q ss_pred EEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchh
Q 010111 406 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (518)
Q Consensus 406 ~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~ 444 (518)
+||....+.|..--.|-.||+||.|.+|.+..|++-+|.
T Consensus 511 hVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 511 HVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred EEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchh
Confidence 799999999999999999999999999999999987774
No 116
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.88 E-value=2.2e-20 Score=198.81 Aligned_cols=160 Identities=19% Similarity=0.200 Sum_probs=112.1
Q ss_pred HhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHH-HHHHH
Q 010111 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV-KDVFA 122 (518)
Q Consensus 44 ~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~-~~~~~ 122 (518)
..-|| ++++-|.+....+...+..++.+++.|+||+|||++|++|++... .+.+++|++||++|++|+ .+.+.
T Consensus 240 ~~~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-----~~~~vvI~t~T~~Lq~Ql~~~~i~ 313 (820)
T PRK07246 240 ALLGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-----DQRQIIVSVPTKILQDQIMAEEVK 313 (820)
T ss_pred ccCCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-----CCCcEEEEeCcHHHHHHHHHHHHH
Confidence 33467 899999998777777777889999999999999999999988753 235899999999999999 57788
Q ss_pred HhccccCceEEEeecCCchHHHHH--HhhcC-----------------------Ccc-c-------------------cC
Q 010111 123 AIAPAVGLSVGLAVGQSSIADEIS--ELIKR-----------------------PKL-E-------------------AG 157 (518)
Q Consensus 123 ~~~~~~~~~v~~~~g~~~~~~~~~--~~~~~-----------------------~~~-~-------------------~~ 157 (518)
.+.+..++++.++.|+.++-...+ +.... +.. + .+
T Consensus 314 ~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~ 393 (820)
T PRK07246 314 AIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLS 393 (820)
T ss_pred HHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCC
Confidence 888778888888888766422111 00000 000 0 00
Q ss_pred ccCC--chhHH---HhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhh
Q 010111 158 ICYD--PEDVL---QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211 (518)
Q Consensus 158 ~~~~--~~~~~---~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~ 211 (518)
..+. ....+ +.-...+||+|+++..|+..+.... .+...+++||||||++.+
T Consensus 394 ~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~--~~p~~~~lIiDEAH~l~~ 450 (820)
T PRK07246 394 QSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK--DFARNKVLVFDEAQKLML 450 (820)
T ss_pred CCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc--CCCCCCEEEEECcchhHH
Confidence 0010 11111 2224568999999998888775432 256789999999998854
No 117
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=5.4e-21 Score=196.90 Aligned_cols=370 Identities=17% Similarity=0.195 Sum_probs=229.2
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
+|. .|+++|.-. .+.-++.-+..+.||+|||+++.+|++-....+ ..+.+++|+..||.|-++++..+.
T Consensus 79 lGm-~~ydVQliG------g~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~G----~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 79 MGM-RHFDVQLIG------GMTLHEGKIAEMRTGEGKTLVGTLAVYLNALSG----KGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred hCC-CcchhHHHh------hhHhccCccccccCCCCChHHHHHHHHHHHHcC----CCEEEEeCCHHHHHHHHHHHHHHh
Confidence 564 788888543 333356678999999999999999998765553 379999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHhHhcCCC-----CCCCccc
Q 010111 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRG-----FTLEHLC 199 (518)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~~-----~~~~~~~ 199 (518)
..+|++++++.++.+...+... ..+||+++|..-| +++|...-. .-...+.
T Consensus 148 ~~lGl~v~~i~~~~~~~err~~-----------------------Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~ 204 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRAA-----------------------YAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELN 204 (913)
T ss_pred cccCCEEEEECCCCCHHHHHHH-----------------------hcCCEEEEcccccccchhhccceechhhhcccccc
Confidence 9999999999998776655332 3489999999876 444443211 1237789
Q ss_pred EEEEechhHhhhH----------------hHHhHHHHHHHhcccc---------cccc----------------------
Q 010111 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSD---------NENR---------------------- 232 (518)
Q Consensus 200 ~vViDEah~~~~~----------------~~~~~~~~i~~~~~~~---------~~~~---------------------- 232 (518)
++|+||+|.++=+ ..+..+..+...+... ....
T Consensus 205 ~aIVDEvDsiLIDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~ 284 (913)
T PRK13103 205 FAVIDEVDSILIDEARTPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEE 284 (913)
T ss_pred eeEechhhheeccccCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHH
Confidence 9999999986411 1122222222222110 0000
Q ss_pred -cC--Cc---cccccc-----c----cccchhhhc--------------------ccc---ccCCCC-----------CC
Q 010111 233 -FS--DA---STFLPS-----A----FGSLKTIRR--------------------CGV---ERGFKD-----------KP 263 (518)
Q Consensus 233 -~~--~~---~~~~~~-----~----~~~~~~~~~--------------------~~~---~~~~~~-----------~~ 263 (518)
+. .. ...+.. . ...+..... ++. .+.+.+ ..
T Consensus 285 ~~~~~~i~~~~~~ly~~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~ 364 (913)
T PRK13103 285 MLTQAGLLAEGESLYSAHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLN 364 (913)
T ss_pred HhhhCCCcccchhccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCC
Confidence 00 00 000000 0 000000000 000 000000 00
Q ss_pred CC-c----------------eeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHH
Q 010111 264 YP-R----------------LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 326 (518)
Q Consensus 264 ~~-~----------------~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 326 (518)
.. . .+...||+|......++...+-...+.+.+... ........ .+......|...+...
T Consensus 365 I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP--~~R~D~~d-~vy~t~~eK~~Ai~~e 441 (913)
T PRK13103 365 IQAESQTLASTTFQNYFRLYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKP--LARKDFND-LVYLTAEEKYAAIITD 441 (913)
T ss_pred cCCCceeEEeehHHHHHHhcchhccCCCCCHHHHHHHHHHhCCCEEECCCCCC--cccccCCC-eEEcCHHHHHHHHHHH
Confidence 00 0 123567777765555555544444333333221 11111111 2334455666666665
Q ss_pred HHh--cCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCC--
Q 010111 327 LQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE-- 402 (518)
Q Consensus 327 l~~--~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip-- 402 (518)
+.. ..+.|+||-+.|++..+.+++.|...+ ++..+++......+-.-+-++-+. -.|.|||++++||.||.
T Consensus 442 i~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~g---i~h~VLNAk~~~~EA~IIa~AG~~--GaVTIATNMAGRGTDIkLg 516 (913)
T PRK13103 442 IKECMALGRPVLVGTATIETSEHMSNLLKKEG---IEHKVLNAKYHEKEAEIIAQAGRP--GALTIATNMAGRGTDILLG 516 (913)
T ss_pred HHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcC---CcHHHhccccchhHHHHHHcCCCC--CcEEEeccCCCCCCCEecC
Confidence 553 357899999999999999999999876 677677776554444444333223 37899999999999995
Q ss_pred -----------------------------------CCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchhHH-
Q 010111 403 -----------------------------------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCL- 446 (518)
Q Consensus 403 -----------------------------------~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~- 446 (518)
+==+||-...+.|..--.|-.||+||.|.+|.+-.|++-+|--+
T Consensus 517 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lmr 596 (913)
T PRK13103 517 GNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLMR 596 (913)
T ss_pred CchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHH
Confidence 12278889999999989999999999999999999998766432
Q ss_pred ---HHHHHHHHHhh
Q 010111 447 ---VKRFKKLLQKA 457 (518)
Q Consensus 447 ---~~~~~~~l~~~ 457 (518)
-.++.+++...
T Consensus 597 ~fg~~~~~~~~~~~ 610 (913)
T PRK13103 597 IFASDRVKNFMKAL 610 (913)
T ss_pred hhCcHHHHHHHHHc
Confidence 23455665544
No 118
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=3.2e-20 Score=183.64 Aligned_cols=323 Identities=17% Similarity=0.214 Sum_probs=198.5
Q ss_pred ccchhhHHHHH--------HhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcc-----cCCc-cEEEEcCcHHHHH
Q 010111 50 SLFPVQVAVWQ--------ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCL-RALVVLPTRDLAL 115 (518)
Q Consensus 50 ~~~~~Q~~a~~--------~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~-----~~~~-~~lil~Pt~~La~ 115 (518)
.+.++|..=+. .|++.+..+--++|||.||||||.. +-+.|+..+ ...+ -+=|.-|.|--|.
T Consensus 244 R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQ----vPQFLYEAGf~s~~~~~~gmIGITqPRRVAai 319 (1172)
T KOG0926|consen 244 RPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQ----VPQFLYEAGFASEQSSSPGMIGITQPRRVAAI 319 (1172)
T ss_pred CcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCcccc----chHHHHHcccCCccCCCCCeeeecCchHHHHH
Confidence 45666654321 2444555566789999999999986 223333321 1112 3445568887666
Q ss_pred HHHHHH-HHhccccCceEE--EeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCC
Q 010111 116 QVKDVF-AAIAPAVGLSVG--LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (518)
Q Consensus 116 Q~~~~~-~~~~~~~~~~v~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~ 192 (518)
-+++.. ..+.. ++-.|. ..+.++ +.....|-++|-|.|+.-+.+ .
T Consensus 320 amAkRVa~EL~~-~~~eVsYqIRfd~t-----------------------------i~e~T~IkFMTDGVLLrEi~~--D 367 (1172)
T KOG0926|consen 320 AMAKRVAFELGV-LGSEVSYQIRFDGT-----------------------------IGEDTSIKFMTDGVLLREIEN--D 367 (1172)
T ss_pred HHHHHHHHHhcc-CccceeEEEEeccc-----------------------------cCCCceeEEecchHHHHHHHH--h
Confidence 555433 33333 333332 223332 234568999999999999887 5
Q ss_pred CCCCcccEEEEechhHhh--hHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeE
Q 010111 193 FTLEHLCYLVVDETDRLL--REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (518)
Q Consensus 193 ~~~~~~~~vViDEah~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (518)
|.+..++.||+||||.-. .+-.-..+.+|+.+-..... .+....+++.|
T Consensus 368 flL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~k-----------------------------e~~~~kpLKLI 418 (1172)
T KOG0926|consen 368 FLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYK-----------------------------EQCQIKPLKLI 418 (1172)
T ss_pred HhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhh-----------------------------hhcccCceeEE
Confidence 788999999999999531 11111222333322111000 01122456889
Q ss_pred EEeEeecCC-hhhhhhccCCCCeEEeeCCccccCccccceeeeecCCC---CcHHHHHHHHHhcCCCcEEEEcCChhhHH
Q 010111 271 VLSATLTQD-PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK---LKPLYLVALLQSLGEEKCIVFTSSVESTH 346 (518)
Q Consensus 271 ~~SaT~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~~l~~~~~~~~lVf~~s~~~~~ 346 (518)
+||||+.-. ..+-...+-..|-++.+....+++. ++.- -....+ +.+...+.+-+..+.+.+|||+.....++
T Consensus 419 IMSATLRVsDFtenk~LFpi~pPlikVdARQfPVs--IHF~-krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~ 495 (1172)
T KOG0926|consen 419 IMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVS--IHFN-KRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVD 495 (1172)
T ss_pred EEeeeEEecccccCceecCCCCceeeeecccCceE--EEec-cCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHH
Confidence 999998522 1111112222333555554443332 2211 111111 12233444556778999999999999999
Q ss_pred HHHHHHhhcCC---------------------------------------------------------------------
Q 010111 347 RLCTLLNHFGE--------------------------------------------------------------------- 357 (518)
Q Consensus 347 ~l~~~L~~~~~--------------------------------------------------------------------- 357 (518)
.+++.|++..+
T Consensus 496 qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~ 575 (1172)
T KOG0926|consen 496 QLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADEN 575 (1172)
T ss_pred HHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhcccccc
Confidence 99999976210
Q ss_pred ---------------------------CceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEc
Q 010111 358 ---------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410 (518)
Q Consensus 358 ---------------------------~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 410 (518)
...-|..+++=++......+++.--.|..=++|||++++..+.||++.+||..
T Consensus 576 ~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~ 655 (1172)
T KOG0926|consen 576 GSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDC 655 (1172)
T ss_pred ccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEec
Confidence 01225666677777777788777778888899999999999999999999975
Q ss_pred CCC------------------CCccchhhhhhhcccCCCCCcEEEEeec
Q 010111 411 DKP------------------AYIKTYIHRAGRTARAGQLGRCFTLLHK 441 (518)
Q Consensus 411 ~~p------------------~s~~~~~Qr~GR~gR~g~~g~~~~~~~~ 441 (518)
+.. .|.+.--||+|||||.| +|.||-+++.
T Consensus 656 Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 656 GRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred cchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 532 24455679999999997 9999999974
No 119
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.86 E-value=3e-20 Score=190.13 Aligned_cols=326 Identities=20% Similarity=0.187 Sum_probs=200.8
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccC
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 129 (518)
.+.+-|..|+..+.......+..++.+.||||||.+|+-.+-+.|.++ ..+|+|+|-.+|-.|+.+.|+..+ +
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G----kqvLvLVPEI~Ltpq~~~rf~~rF---g 270 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG----KQVLVLVPEIALTPQLLARFKARF---G 270 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC----CEEEEEeccccchHHHHHHHHHHh---C
Confidence 567889999888876542237889999999999999988777777664 389999999999999999888764 5
Q ss_pred ceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhc-CCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhH
Q 010111 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (518)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (518)
.++.+++++.+..++...+ .... ....|+|+|-..+ ...+.++.+||+||-|.
T Consensus 271 ~~v~vlHS~Ls~~er~~~W------------------~~~~~G~~~vVIGtRSAl--------F~Pf~~LGLIIvDEEHD 324 (730)
T COG1198 271 AKVAVLHSGLSPGERYRVW------------------RRARRGEARVVIGTRSAL--------FLPFKNLGLIIVDEEHD 324 (730)
T ss_pred CChhhhcccCChHHHHHHH------------------HHHhcCCceEEEEechhh--------cCchhhccEEEEecccc
Confidence 7889999999887775543 3333 5689999993333 13578899999999994
Q ss_pred hhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccC
Q 010111 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 288 (518)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~ 288 (518)
- +|... .....++-. +. .........+.++-|||++-+.........
T Consensus 325 ~---sYKq~-------------------~~prYhARd-vA----------~~Ra~~~~~pvvLgSATPSLES~~~~~~g~ 371 (730)
T COG1198 325 S---SYKQE-------------------DGPRYHARD-VA----------VLRAKKENAPVVLGSATPSLESYANAESGK 371 (730)
T ss_pred c---cccCC-------------------cCCCcCHHH-HH----------HHHHHHhCCCEEEecCCCCHHHHHhhhcCc
Confidence 3 21100 000000000 00 000001223678889997533222221111
Q ss_pred CCCeEEeeCCccccCccccceeeeecCCCCc----HHHHHHHHHh-c-CCCcEEEEcCChh-------------------
Q 010111 289 HHPLFLTTGETRYKLPERLESYKLICESKLK----PLYLVALLQS-L-GEEKCIVFTSSVE------------------- 343 (518)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k----~~~l~~~l~~-~-~~~~~lVf~~s~~------------------- 343 (518)
..-........ ...+..+............ ...|+..+++ . .+.++|+|.|.+-
T Consensus 372 y~~~~L~~R~~-~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~C 450 (730)
T COG1198 372 YKLLRLTNRAG-RARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNC 450 (730)
T ss_pred eEEEEcccccc-ccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCC
Confidence 11111111111 1111111111111111111 1233333332 1 3456666655432
Q ss_pred -----------------------------------------hHHHHHHHHhhcCCCceeEEEccccCChHH--HHHHHHH
Q 010111 344 -----------------------------------------STHRLCTLLNHFGELRIKIKEYSGLQRQSV--RSKTLKA 380 (518)
Q Consensus 344 -----------------------------------------~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~--r~~~~~~ 380 (518)
-++++.+.|... .++.++..+.++..... -+..+..
T Consensus 451 d~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~-FP~~rv~r~d~Dtt~~k~~~~~~l~~ 529 (730)
T COG1198 451 DSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRL-FPGARIIRIDSDTTRRKGALEDLLDQ 529 (730)
T ss_pred CcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHH-CCCCcEEEEccccccchhhHHHHHHH
Confidence 234444444433 23456777777766543 4678999
Q ss_pred HhcCCceEEEEcCccccCCCCCCCCEEEEcCCCC------------CccchhhhhhhcccCCCCCcEEEEeecch
Q 010111 381 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA------------YIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (518)
Q Consensus 381 f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~------------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e 443 (518)
|..|+.+|||.|++++.|.|+|+++.|...|... ....+.|-.||+||++.+|.+++-...-|
T Consensus 530 ~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 530 FANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPD 604 (730)
T ss_pred HhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCC
Confidence 9999999999999999999999999987665432 12357899999999999998887765433
No 120
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=3.8e-20 Score=188.61 Aligned_cols=370 Identities=17% Similarity=0.179 Sum_probs=224.4
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
+|. .|+++|.-.--.+ +..-+..+.||-|||+++.+|++-+...+ ..|-|++.+-.||..-++++..+.
T Consensus 75 lG~-r~ydVQliGglvL------h~G~IAEMkTGEGKTLvAtLpayLnAL~G----kgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 75 LGK-RPYDVQIIGGIIL------DLGSVAEMKTGEGKTITSIAPVYLNALTG----KGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred hCC-CcCchHHHHHHHH------hcCCeeeecCCCCccHHHHHHHHHHHhcC----CceEEEecchhhhhhhHHHHHHHH
Confidence 565 7888997653221 34458999999999999999987554443 368999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHhHhcCCC-----CCCCccc
Q 010111 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRG-----FTLEHLC 199 (518)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~~-----~~~~~~~ 199 (518)
.++|++|++...+.+...+.. ...|||+++|..-| +++|+..-. .-...+.
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~-----------------------aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~ 200 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKRE-----------------------AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLN 200 (925)
T ss_pred HHhCCceeeeCCCCChHHHHH-----------------------hccCCCeeecCcccchhhhhhcccccHHHhcCcccc
Confidence 999999999988766554432 34689999998776 344543211 2246688
Q ss_pred EEEEechhHhhhH----------------hHHhHHHHHHHhcccc-------c-------------------ccccCCcc
Q 010111 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSD-------N-------------------ENRFSDAS 237 (518)
Q Consensus 200 ~vViDEah~~~~~----------------~~~~~~~~i~~~~~~~-------~-------------------~~~~~~~~ 237 (518)
+.|+||+|.++=+ ..+..+..+...+... . .+.+....
T Consensus 201 faIVDEVDSILIDEArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n 280 (925)
T PRK12903 201 FCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIEN 280 (925)
T ss_pred eeeeccchheeecccCCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhh
Confidence 9999999976311 1222222222222110 0 00000000
Q ss_pred cccccc-cccchhhh--------------------cccc---ccCCCC-----------CC-CCc---------------
Q 010111 238 TFLPSA-FGSLKTIR--------------------RCGV---ERGFKD-----------KP-YPR--------------- 266 (518)
Q Consensus 238 ~~~~~~-~~~~~~~~--------------------~~~~---~~~~~~-----------~~-~~~--------------- 266 (518)
..+.++ ...+.... .++. .+.|.+ .. .+.
T Consensus 281 ~~l~h~i~~AL~A~~lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~ 360 (925)
T PRK12903 281 SELVHRIQNALRAHKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRL 360 (925)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHh
Confidence 000000 00000000 0000 000000 00 000
Q ss_pred -eeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHh--cCCCcEEEEcCChh
Q 010111 267 -LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVE 343 (518)
Q Consensus 267 -~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~~ 343 (518)
.+...||+|......++...+-...+.+.+... ....... -.+......|...+...+.. ..+.|+||.|.|++
T Consensus 361 Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IPTnkP--~~R~D~~-d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe 437 (925)
T PRK12903 361 FKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKP--VIRKDEP-DSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVE 437 (925)
T ss_pred cchhhccCCCCHHHHHHHHHHhCCCEEECCCCCC--eeeeeCC-CcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 124567777655444554433333333322211 1111111 12333445666666655542 35779999999999
Q ss_pred hHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcC-CceEEEEcCccccCCCCCCCC--------EEEEcCCCC
Q 010111 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVLVSSDAMTRGMDVEGVN--------NVVNYDKPA 414 (518)
Q Consensus 344 ~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g-~~~vLvaT~~~~~GiDip~v~--------~VI~~~~p~ 414 (518)
..+.+++.|...+ ++..++++.....+-.-+- ..| .-.|.|||++++||.||.--. +||....+.
T Consensus 438 ~SE~ls~~L~~~g---i~h~vLNAk~~e~EA~IIa---~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerhe 511 (925)
T PRK12903 438 DSETLHELLLEAN---IPHTVLNAKQNAREAEIIA---KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAE 511 (925)
T ss_pred HHHHHHHHHHHCC---CCceeecccchhhHHHHHH---hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCc
Confidence 9999999999876 7778888765543333332 344 347899999999999997322 899999999
Q ss_pred CccchhhhhhhcccCCCCCcEEEEeecchhHHH-----HHHHHHHHhhc
Q 010111 415 YIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLV-----KRFKKLLQKAD 458 (518)
Q Consensus 415 s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~-----~~~~~~l~~~~ 458 (518)
|..---|..||+||.|.+|.+-.|++-+|.-+- +++..++....
T Consensus 512 SrRIDnQLrGRaGRQGDpGss~f~lSLeD~L~r~f~~~~ri~~~~~~l~ 560 (925)
T PRK12903 512 SRRIDNQLRGRSGRQGDVGESRFFISLDDQLFRRFSNFDKIKEAFKKLG 560 (925)
T ss_pred hHHHHHHHhcccccCCCCCcceEEEecchHHHHHhCCHHHHHHHHHhcC
Confidence 998888999999999999999999987774331 35555555433
No 121
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.86 E-value=4.5e-21 Score=197.97 Aligned_cols=373 Identities=20% Similarity=0.224 Sum_probs=229.8
Q ss_pred CccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcccc
Q 010111 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (518)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 128 (518)
.+++.||.+-+..++.....+.++|+....|.|||+. .+..+..|.....-....||++|...+.. |.++|..+.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~~~~gpflvvvplst~~~-W~~ef~~w~--- 443 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSLQIHGPFLVVVPLSTITA-WEREFETWT--- 443 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhhhccCCeEEEeehhhhHH-HHHHHHHHh---
Confidence 4799999998887776666789999999999999975 33344444433212234899999877655 777888775
Q ss_pred CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhH
Q 010111 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (518)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (518)
++++.+++|.......+.++.-.-... .-.-..+++++|++.++..-...+ --.+.++++||||+
T Consensus 444 ~mn~i~y~g~~~sr~~i~~ye~~~~~~------------~~~lkf~~lltTye~~LkDk~~L~---~i~w~~~~vDeahr 508 (1373)
T KOG0384|consen 444 DMNVIVYHGNLESRQLIRQYEFYHSSN------------TKKLKFNALLTTYEIVLKDKAELS---KIPWRYLLVDEAHR 508 (1373)
T ss_pred hhceeeeecchhHHHHHHHHHheecCC------------ccccccceeehhhHHHhccHhhhc---cCCcceeeecHHhh
Confidence 689999999988776665542110000 000136999999998865433322 22478999999999
Q ss_pred hhhHhHH----------------------hHHHHHHHhcccccccccCCcccccccc-------cccchhhhccccccCC
Q 010111 209 LLREAYQ----------------------AWLPTVLQLTRSDNENRFSDASTFLPSA-------FGSLKTIRRCGVERGF 259 (518)
Q Consensus 209 ~~~~~~~----------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 259 (518)
+-+..-. ..+..+.+++.-..++.|....++.... ...+..+-....-+..
T Consensus 509 LkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~ 588 (1373)
T KOG0384|consen 509 LKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRL 588 (1373)
T ss_pred cCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHH
Confidence 8643211 2233344444333333444443333322 0111110011111111
Q ss_pred C-C---CCCCc---eeeEEEeEee--------cCChhhh-----------------hhccCCCCeEEeeCCccccCccc-
Q 010111 260 K-D---KPYPR---LVKMVLSATL--------TQDPNKL-----------------AQLDLHHPLFLTTGETRYKLPER- 306 (518)
Q Consensus 260 ~-~---~~~~~---~~~i~~SaT~--------~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~- 306 (518)
+ + ...+. +-.+-+|+-. +.+...+ .+..+++|..+............
T Consensus 589 kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~ 668 (1373)
T KOG0384|consen 589 KKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRD 668 (1373)
T ss_pred HhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhh
Confidence 1 0 11111 1112222211 1111111 11233344433322211000000
Q ss_pred ---cceeeeecCCCCcHHHHHHHHHhc--CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHH
Q 010111 307 ---LESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381 (518)
Q Consensus 307 ---~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f 381 (518)
-...........|+..|-.+|.++ .++++|||..=+.+.+.|+++|...+ ++...+.|++..+.|+..++.|
T Consensus 669 ~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~---ypfQRLDGsvrgelRq~AIDhF 745 (1373)
T KOG0384|consen 669 KMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRG---YPFQRLDGSVRGELRQQAIDHF 745 (1373)
T ss_pred cchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcC---CcceeccCCcchHHHHHHHHhc
Confidence 001111223445555566666544 46799999999999999999999877 8999999999999999999999
Q ss_pred hc---CCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCC--cEEEEeecchh
Q 010111 382 RE---GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG--RCFTLLHKDEV 444 (518)
Q Consensus 382 ~~---g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~e~ 444 (518)
.. .+.-.|+||-+.+-|||+..++.||+||..|+|..-+|...|++|.|+.. .+|-|++.+.+
T Consensus 746 nap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~Tv 813 (1373)
T KOG0384|consen 746 NAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTV 813 (1373)
T ss_pred cCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCch
Confidence 84 45667999999999999999999999999999999999999999999875 47778876543
No 122
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.86 E-value=1.1e-20 Score=190.60 Aligned_cols=149 Identities=19% Similarity=0.122 Sum_probs=100.9
Q ss_pred CCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcc
Q 010111 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (518)
Q Consensus 47 g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 126 (518)
+| .|..||.+.+... -.+...+|+|||.+|||++..-.+-..+... ...-+|+++||++|++|+...+.....
T Consensus 509 dF-~Pd~WQ~elLDsv----Dr~eSavIVAPTSaGKTfisfY~iEKVLRes--D~~VVIyvaPtKaLVnQvsa~VyaRF~ 581 (1330)
T KOG0949|consen 509 DF-CPDEWQRELLDSV----DRNESAVIVAPTSAGKTFISFYAIEKVLRES--DSDVVIYVAPTKALVNQVSANVYARFD 581 (1330)
T ss_pred cc-CCcHHHHHHhhhh----hcccceEEEeeccCCceeccHHHHHHHHhhc--CCCEEEEecchHHHhhhhhHHHHHhhc
Confidence 35 6888999875543 3578999999999999998666555555554 333689999999999999877765542
Q ss_pred ccC-ceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcC--CCCCCCcccEEEE
Q 010111 127 AVG-LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT--RGFTLEHLCYLVV 203 (518)
Q Consensus 127 ~~~-~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~--~~~~~~~~~~vVi 203 (518)
..- .....+.|....+.+ ...-+|+|+|+-|+.+-.++... ...+..+++++|+
T Consensus 582 ~~t~~rg~sl~g~ltqEYs-----------------------inp~nCQVLITvPecleslLlspp~~q~~cerIRyiIf 638 (1330)
T KOG0949|consen 582 TKTFLRGVSLLGDLTQEYS-----------------------INPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIF 638 (1330)
T ss_pred cCccccchhhHhhhhHHhc-----------------------CCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEe
Confidence 211 222223332221111 00126899999999998888763 2345788999999
Q ss_pred echhHhhhHhHHhHHHHHHHhc
Q 010111 204 DETDRLLREAYQAWLPTVLQLT 225 (518)
Q Consensus 204 DEah~~~~~~~~~~~~~i~~~~ 225 (518)
||+|.+.+..-+-..+.++-+.
T Consensus 639 DEVH~iG~~ed~l~~Eqll~li 660 (1330)
T KOG0949|consen 639 DEVHLIGNEEDGLLWEQLLLLI 660 (1330)
T ss_pred chhhhccccccchHHHHHHHhc
Confidence 9999987665544455555443
No 123
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=1.7e-20 Score=176.62 Aligned_cols=311 Identities=20% Similarity=0.193 Sum_probs=205.6
Q ss_pred CccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcccc
Q 010111 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (518)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 128 (518)
..++|||.+++...+.+. .-+..+|+.|.|+|||++-+-++. .+ ..++|+||.+---+.||..+|..++...
T Consensus 301 t~iRpYQEksL~KMFGNg-RARSGiIVLPCGAGKtLVGvTAa~-ti------kK~clvLcts~VSVeQWkqQfk~wsti~ 372 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKTLVGVTAAC-TI------KKSCLVLCTSAVSVEQWKQQFKQWSTIQ 372 (776)
T ss_pred cccCchHHHHHHHHhCCC-cccCceEEEecCCCCceeeeeeee-ee------cccEEEEecCccCHHHHHHHHHhhcccC
Confidence 368999999988777532 126789999999999997444332 22 2369999999999999999999998776
Q ss_pred CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCC-------CCCCCcccEE
Q 010111 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-------GFTLEHLCYL 201 (518)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-------~~~~~~~~~v 201 (518)
+..++.++++.. ++...++.|+|+|+.++..--.+.. .+.-..+.++
T Consensus 373 d~~i~rFTsd~K--------------------------e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGll 426 (776)
T KOG1123|consen 373 DDQICRFTSDAK--------------------------ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLL 426 (776)
T ss_pred ccceEEeecccc--------------------------ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeE
Confidence 777777776643 2345678999999977643211100 0123458899
Q ss_pred EEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChh
Q 010111 202 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281 (518)
Q Consensus 202 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~ 281 (518)
++||+|.+-..=|...+..+-... .+.++||+-..-+
T Consensus 427 llDEVHvvPA~MFRRVlsiv~aHc-------------------------------------------KLGLTATLvREDd 463 (776)
T KOG1123|consen 427 LLDEVHVVPAKMFRRVLSIVQAHC-------------------------------------------KLGLTATLVREDD 463 (776)
T ss_pred EeehhccchHHHHHHHHHHHHHHh-------------------------------------------hccceeEEeeccc
Confidence 999999887666665555444432 3677888765544
Q ss_pred hhhhc-cCCCCeEEeeCCccccC--------------------------ccccceeeeecCCCCcHHHHHHHHH--hcCC
Q 010111 282 KLAQL-DLHHPLFLTTGETRYKL--------------------------PERLESYKLICESKLKPLYLVALLQ--SLGE 332 (518)
Q Consensus 282 ~~~~~-~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~k~~~l~~~l~--~~~~ 332 (518)
.+... ++-.|..+...-..... ...-...........|+....-+++ ...+
T Consensus 464 KI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~Rg 543 (776)
T KOG1123|consen 464 KITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHERRG 543 (776)
T ss_pred cccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHhcC
Confidence 44332 22233322221110000 0001111122223344444444443 2257
Q ss_pred CcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHh-cCCceEEEEcCccccCCCCCCCCEEEEcC
Q 010111 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR-EGKIQVLVSSDAMTRGMDVEGVNNVVNYD 411 (518)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~-~g~~~vLvaT~~~~~GiDip~v~~VI~~~ 411 (518)
.++|||..++-....++-.|.+ -.+.|..++.+|..+++.|+ +..++.++.+.+....+|+|..+++|+..
T Consensus 544 DKiIVFsDnvfALk~YAikl~K--------pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQIS 615 (776)
T KOG1123|consen 544 DKIIVFSDNVFALKEYAIKLGK--------PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQIS 615 (776)
T ss_pred CeEEEEeccHHHHHHHHHHcCC--------ceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEc
Confidence 8999998887777776665543 34679999999999999999 45788899999999999999999999876
Q ss_pred -CCCCccchhhhhhhcccCCC---CC---cEEEEeecchh
Q 010111 412 -KPAYIKTYIHRAGRTARAGQ---LG---RCFTLLHKDEV 444 (518)
Q Consensus 412 -~p~s~~~~~Qr~GR~gR~g~---~g---~~~~~~~~~e~ 444 (518)
.-.|...-.||.||..|+-+ ++ .-+++++.+-.
T Consensus 616 SH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTq 655 (776)
T KOG1123|consen 616 SHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQ 655 (776)
T ss_pred ccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchH
Confidence 45677888999999999742 22 34455555443
No 124
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=3.3e-20 Score=180.16 Aligned_cols=305 Identities=21% Similarity=0.234 Sum_probs=198.3
Q ss_pred hhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhccc--CCccEEEEcCcHHHHHHHHH-HHHHhccccCceEEEeecC
Q 010111 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVKD-VFAAIAPAVGLSVGLAVGQ 138 (518)
Q Consensus 62 ~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~--~~~~~lil~Pt~~La~Q~~~-~~~~~~~~~~~~v~~~~g~ 138 (518)
++.++..++-++|.|.||||||.. +-+.|...+. .+.++-+.-|.|--|.-++. ..+.+. .+.+--+|.
T Consensus 273 ll~av~e~QVLiI~GeTGSGKTTQ----iPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMg----vkLG~eVGY 344 (902)
T KOG0923|consen 273 LLKAVKEHQVLIIVGETGSGKTTQ----IPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMG----VKLGHEVGY 344 (902)
T ss_pred HHHHHHhCcEEEEEcCCCCCcccc----ccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhC----cccccccce
Confidence 344445678889999999999987 3344444321 23336666799888776654 334443 333333333
Q ss_pred CchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHH
Q 010111 139 SSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 218 (518)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~ 218 (518)
....+.+ .....-|-++|-|+|+.-+.. ..++.++++||+||||.--- ..+.+
T Consensus 345 sIRFEdc-----------------------TSekTvlKYMTDGmLlREfL~--epdLasYSViiiDEAHERTL--~TDIL 397 (902)
T KOG0923|consen 345 SIRFEDC-----------------------TSEKTVLKYMTDGMLLREFLS--EPDLASYSVIIVDEAHERTL--HTDIL 397 (902)
T ss_pred EEEeccc-----------------------cCcceeeeeecchhHHHHHhc--cccccceeEEEeehhhhhhh--hhhHH
Confidence 2211111 113346779999999988776 46788999999999995310 01111
Q ss_pred HHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCC
Q 010111 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (518)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 298 (518)
--++..+.. ..|.++.+++|||+ +.+.+...+-.-|++... .
T Consensus 398 fgLvKDIar-----------------------------------~RpdLKllIsSAT~--DAekFS~fFDdapIF~iP-G 439 (902)
T KOG0923|consen 398 FGLVKDIAR-----------------------------------FRPDLKLLISSATM--DAEKFSAFFDDAPIFRIP-G 439 (902)
T ss_pred HHHHHHHHh-----------------------------------hCCcceEEeecccc--CHHHHHHhccCCcEEecc-C
Confidence 112211111 11556889999998 555666555455554333 2
Q ss_pred ccccCccccceeeeecCCCCcHH-HHHHHHH---hcCCCcEEEEcCChhhHHHHHHHHhhc----C--CCceeEEEcccc
Q 010111 299 TRYKLPERLESYKLICESKLKPL-YLVALLQ---SLGEEKCIVFTSSVESTHRLCTLLNHF----G--ELRIKIKEYSGL 368 (518)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~k~~-~l~~~l~---~~~~~~~lVf~~s~~~~~~l~~~L~~~----~--~~~~~v~~~hg~ 368 (518)
..++ +..++...++..=.. .+..+++ ..+.+-+|||....+..+...+.|... | ...+-+..+|++
T Consensus 440 RRyP----Vdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaN 515 (902)
T KOG0923|consen 440 RRYP----VDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYAN 515 (902)
T ss_pred cccc----eeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeecccc
Confidence 2222 233343333332222 2222332 335688999999888887777766542 2 123567889999
Q ss_pred CChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCC------------------CCCccchhhhhhhcccCC
Q 010111 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK------------------PAYIKTYIHRAGRTARAG 430 (518)
Q Consensus 369 ~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~------------------p~s~~~~~Qr~GR~gR~g 430 (518)
+|.+....+++---.|..+|++||++++..+.|+++.+||.-++ |.|.+.-.||+||+||.|
T Consensus 516 LPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg 595 (902)
T KOG0923|consen 516 LPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG 595 (902)
T ss_pred CChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC
Confidence 99999999998888999999999999999999999999996443 456778899999999997
Q ss_pred CCCcEEEEeecchh
Q 010111 431 QLGRCFTLLHKDEV 444 (518)
Q Consensus 431 ~~g~~~~~~~~~e~ 444 (518)
+|.|+-+++...+
T Consensus 596 -PGKCfRLYt~~aY 608 (902)
T KOG0923|consen 596 -PGKCFRLYTAWAY 608 (902)
T ss_pred -CCceEEeechhhh
Confidence 9999999985443
No 125
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.85 E-value=5e-20 Score=190.45 Aligned_cols=311 Identities=19% Similarity=0.235 Sum_probs=206.5
Q ss_pred hCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHH-HhccccCceEEEeecCCch
Q 010111 63 IGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA-AIAPAVGLSVGLAVGQSSI 141 (518)
Q Consensus 63 ~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~-~~~~~~~~~v~~~~g~~~~ 141 (518)
++.+..++.++|++.||||||...---+++.....+ ...++++--|+|--|.-+++.+. +.+...|-.|+.-.+..+.
T Consensus 182 l~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~ 260 (924)
T KOG0920|consen 182 LDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-AACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLESK 260 (924)
T ss_pred HHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-CCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEeeecc
Confidence 334446788999999999999986666777765554 55678888899888887776553 3344445444444333221
Q ss_pred HHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHH
Q 010111 142 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221 (518)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i 221 (518)
......+.+||.|.|++.+.. ...+..+..||+||+|.---. .+.+-.+
T Consensus 261 ---------------------------~s~~t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHER~i~--~DflLi~ 309 (924)
T KOG0920|consen 261 ---------------------------RSRETRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHERSIN--TDFLLIL 309 (924)
T ss_pred ---------------------------cCCceeEEEecHHHHHHHhcc--CcccccCceeeeeeEEEccCC--cccHHHH
Confidence 122368999999999999987 456788999999999953111 0111111
Q ss_pred HHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccc
Q 010111 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 301 (518)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (518)
+..+-.. .+.++.|+||||+. .+.+...+..-|++...+. .+
T Consensus 310 lk~lL~~-----------------------------------~p~LkvILMSAT~d--ae~fs~YF~~~pvi~i~gr-tf 351 (924)
T KOG0920|consen 310 LKDLLPR-----------------------------------NPDLKVILMSATLD--AELFSDYFGGCPVITIPGR-TF 351 (924)
T ss_pred HHHHhhh-----------------------------------CCCceEEEeeeecc--hHHHHHHhCCCceEeecCC-Cc
Confidence 1111100 14568999999985 3333333333333322221 11
Q ss_pred cCc---------------ccccee------------eeecCCCCcHHHHHHHHH----hcCCCcEEEEcCChhhHHHHHH
Q 010111 302 KLP---------------ERLESY------------KLICESKLKPLYLVALLQ----SLGEEKCIVFTSSVESTHRLCT 350 (518)
Q Consensus 302 ~~~---------------~~~~~~------------~~~~~~~~k~~~l~~~l~----~~~~~~~lVf~~s~~~~~~l~~ 350 (518)
++. .....+ ......+.....+..++. ....+.+|||.+.......+.+
T Consensus 352 pV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~ 431 (924)
T KOG0920|consen 352 PVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKE 431 (924)
T ss_pred chHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHH
Confidence 110 000000 000011122333333333 3346899999999999999999
Q ss_pred HHhhcC----CCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcC--------CC-----
Q 010111 351 LLNHFG----ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD--------KP----- 413 (518)
Q Consensus 351 ~L~~~~----~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~--------~p----- 413 (518)
.|.... ...+-+..+|+.|+..+.+.+.+..-.|..+|+++|++++.+|-|++|-+||..+ +-
T Consensus 432 ~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~ 511 (924)
T KOG0920|consen 432 LLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSC 511 (924)
T ss_pred HhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcch
Confidence 997532 1346788999999999999999999999999999999999999999999999744 22
Q ss_pred -----CCccchhhhhhhcccCCCCCcEEEEeecchh
Q 010111 414 -----AYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (518)
Q Consensus 414 -----~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~ 444 (518)
.|...-.||.||+||. +.|.|+.+++....
T Consensus 512 l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 512 LLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRY 546 (924)
T ss_pred hheeeccccchHHhcccccCc-cCCeeEEeechhhh
Confidence 3556778999999999 89999999987655
No 126
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=1.2e-19 Score=180.05 Aligned_cols=373 Identities=18% Similarity=0.156 Sum_probs=222.5
Q ss_pred CccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcccc
Q 010111 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (518)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 128 (518)
..|++||++.++.+.+...++...++....|.|||...+ ..+..|.....--..+|||||. .+..||.++|.++++.
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQii-sFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~- 280 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQII-SFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPP- 280 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHH-HHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcc-
Confidence 368899999998877666677888999999999997633 2333443331122469999999 6778999999999875
Q ss_pred CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhH
Q 010111 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (518)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (518)
.+|.+++|..+....- ...........+.+.......|+++|++.+.-. . ..+.--.++++|+||.|+
T Consensus 281 -~rv~ilh~t~s~~r~~--------~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~-d~l~~~~W~y~ILDEGH~ 348 (923)
T KOG0387|consen 281 -FRVFILHGTGSGARYD--------ASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--G-DDLLGILWDYVILDEGHR 348 (923)
T ss_pred -eEEEEEecCCcccccc--------cchhhhhhhhhheeeecccCcEEEEehhhhccc--C-cccccccccEEEecCccc
Confidence 6777777765521100 000000000111122234568999998876322 1 122334588999999998
Q ss_pred hhhHhHH----------------------hHHHHHHHhcccccccccCCcccccccccccc-------------------
Q 010111 209 LLREAYQ----------------------AWLPTVLQLTRSDNENRFSDASTFLPSAFGSL------------------- 247 (518)
Q Consensus 209 ~~~~~~~----------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 247 (518)
+-+.+.. ..+.++++++.-..++.+.....|......-+
T Consensus 349 IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykc 428 (923)
T KOG0387|consen 349 IRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKC 428 (923)
T ss_pred ccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHH
Confidence 8655422 22223333222222222222222211110000
Q ss_pred ----hhhhcccccc------CCCCCCCCceeeEEEeEeecCChhhhhh--------------------------ccCCCC
Q 010111 248 ----KTIRRCGVER------GFKDKPYPRLVKMVLSATLTQDPNKLAQ--------------------------LDLHHP 291 (518)
Q Consensus 248 ----~~~~~~~~~~------~~~~~~~~~~~~i~~SaT~~~~~~~~~~--------------------------~~~~~~ 291 (518)
.......+-| .....+...-+.++.+-|.. -..+.. ..+++|
T Consensus 429 a~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~--QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHP 506 (923)
T KOG0387|consen 429 AVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKL--QRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHP 506 (923)
T ss_pred HHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHH--HHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCc
Confidence 0000000000 11122222233444444432 111111 111222
Q ss_pred eEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhc--CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccC
Q 010111 292 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQ 369 (518)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~ 369 (518)
.......+.. ..-..+........|...+..++... .+.++|+|..++.+.+.+..+|.. ..++....+.|..
T Consensus 507 dll~~~~~~~---~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~--~~~ysylRmDGtT 581 (923)
T KOG0387|consen 507 DLLDRRDEDE---KQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRR--AKGYSYLRMDGTT 581 (923)
T ss_pred ccccCccccc---ccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHh--cCCceEEEecCCC
Confidence 2221110000 00001112233456777888877743 567999999999999999999985 2349999999999
Q ss_pred ChHHHHHHHHHHhcCC-ceE-EEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCc--EEEEeecch
Q 010111 370 RQSVRSKTLKAFREGK-IQV-LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR--CFTLLHKDE 443 (518)
Q Consensus 370 ~~~~r~~~~~~f~~g~-~~v-LvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~e 443 (518)
+...|..++++|.++. +.| |++|.+.+-|+|+.+++-||+||+.|+|.+-.|..-|+.|.|+... +|-+++..-
T Consensus 582 ~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gT 659 (923)
T KOG0387|consen 582 PAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGT 659 (923)
T ss_pred ccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCc
Confidence 9999999999999765 444 8999999999999999999999999999999999999999997654 444555443
No 127
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.84 E-value=7.6e-19 Score=180.37 Aligned_cols=131 Identities=24% Similarity=0.272 Sum_probs=99.9
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
+|. .|++.|.-+ .+.-.+.-++.+.||.|||+++.+|++-+... +..|-|++++..||.+-++++..+.
T Consensus 73 lG~-r~ydvQlig------~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~----G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 73 LGL-RHFDVQLIG------GLVLNDGKIAEMKTGEGKTLVATLPAYLNALT----GKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred hCC-CCCchHhhh------hHhhcCCccccccCCCCchHHHHHHHHHHHhc----CCceEEEeCCHHHHHHHHHHHHHHH
Confidence 576 688999654 23335678999999999999999998644333 3479999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHH-HhHhcC-----CCCCCCccc
Q 010111 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM-DHINAT-----RGFTLEHLC 199 (518)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~-~~l~~~-----~~~~~~~~~ 199 (518)
..+|+++++..++.+...+.. ...+||+++|..-|- ++|+.. ...-...+.
T Consensus 142 ~~LGLsvg~i~~~~~~~err~-----------------------aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~ 198 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKK-----------------------NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFN 198 (870)
T ss_pred HHcCCceeeeCCCCChHHHHH-----------------------hcCCCCEecCCccccccchhhccCcChHHhhccccc
Confidence 999999999988887766533 346799999986552 333321 112246688
Q ss_pred EEEEechhHhh
Q 010111 200 YLVVDETDRLL 210 (518)
Q Consensus 200 ~vViDEah~~~ 210 (518)
+.|+||+|.++
T Consensus 199 faIVDEvDSiL 209 (870)
T CHL00122 199 YCIIDEVDSIL 209 (870)
T ss_pred eeeeecchhhe
Confidence 99999999763
No 128
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.84 E-value=4e-19 Score=176.13 Aligned_cols=372 Identities=22% Similarity=0.238 Sum_probs=221.9
Q ss_pred CCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcc
Q 010111 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (518)
Q Consensus 47 g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 126 (518)
|+ ++.+||.--+..+.-....+-+.|+....|.|||.. .++.+..|.+.+.++ .-||+||+..|-+ |.++|.+||+
T Consensus 397 ~i-~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~~g-pHLVVvPsSTleN-WlrEf~kwCP 472 (941)
T KOG0389|consen 397 GI-QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGNPG-PHLVVVPSSTLEN-WLREFAKWCP 472 (941)
T ss_pred CC-cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCCCC-CcEEEecchhHHH-HHHHHHHhCC
Confidence 44 588999887665432223456779999999999975 444566666654444 4789999987755 8899999998
Q ss_pred ccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEech
Q 010111 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206 (518)
Q Consensus 127 ~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEa 206 (518)
.++|..++|........+...+. -....||+++|+......-.....+.-.+++++|+||+
T Consensus 473 --sl~Ve~YyGSq~ER~~lR~~i~~-----------------~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEg 533 (941)
T KOG0389|consen 473 --SLKVEPYYGSQDERRELRERIKK-----------------NKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEG 533 (941)
T ss_pred --ceEEEeccCcHHHHHHHHHHHhc-----------------cCCCccEEEEEeecccCChHHHHHHHhccccEEEecch
Confidence 48899999999766666544332 12368999999877643222111123456899999999
Q ss_pred hHhhhHhHH--hHH--------------------HHHHHhcccccccccCCcccccccccccchh--------------h
Q 010111 207 DRLLREAYQ--AWL--------------------PTVLQLTRSDNENRFSDASTFLPSAFGSLKT--------------I 250 (518)
Q Consensus 207 h~~~~~~~~--~~~--------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~ 250 (518)
|.+-+.... ..+ .++++++.-.-...|......+...+..-.. +
T Consensus 534 HmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerI 613 (941)
T KOG0389|consen 534 HMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERI 613 (941)
T ss_pred hhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHH
Confidence 977554322 112 2222222211111121111111111110000 0
Q ss_pred h------ccccccCCC----CCCCCc---eeeEEEeEeecCChhhhhhcc-------------------------CCCCe
Q 010111 251 R------RCGVERGFK----DKPYPR---LVKMVLSATLTQDPNKLAQLD-------------------------LHHPL 292 (518)
Q Consensus 251 ~------~~~~~~~~~----~~~~~~---~~~i~~SaT~~~~~~~~~~~~-------------------------~~~~~ 292 (518)
. ...+-|..+ ....++ +..+.||..-..-...++... -.+|.
T Consensus 614 srAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPL 693 (941)
T KOG0389|consen 614 SRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPL 693 (941)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChh
Confidence 0 000000000 111111 222333333211111111111 00111
Q ss_pred EEeeCCc---------------------------------cccCcc------ccceeee---ecCCCCcHHHHHHHHHhc
Q 010111 293 FLTTGET---------------------------------RYKLPE------RLESYKL---ICESKLKPLYLVALLQSL 330 (518)
Q Consensus 293 ~~~~~~~---------------------------------~~~~~~------~~~~~~~---~~~~~~k~~~l~~~l~~~ 330 (518)
.+..... .+.+.. .+..+.+ ..-...|...|..+|...
T Consensus 694 L~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~ 773 (941)
T KOG0389|consen 694 LFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKI 773 (941)
T ss_pred HHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHH
Confidence 1100000 000000 0000000 011345666777777643
Q ss_pred --CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcC-CceE-EEEcCccccCCCCCCCCE
Q 010111 331 --GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQV-LVSSDAMTRGMDVEGVNN 406 (518)
Q Consensus 331 --~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g-~~~v-LvaT~~~~~GiDip~v~~ 406 (518)
.+.++|||.......+.+...|...+ ++...+.|...-.+|+.+++.|... ++.| |++|.+.+.|||+.++++
T Consensus 774 k~~G~RVLiFSQFTqmLDILE~~L~~l~---~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~ 850 (941)
T KOG0389|consen 774 KKKGDRVLIFSQFTQMLDILEVVLDTLG---YKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANT 850 (941)
T ss_pred hhcCCEEEEeeHHHHHHHHHHHHHHhcC---ceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccce
Confidence 46899999999999999999998766 8999999999999999999999865 3444 899999999999999999
Q ss_pred EEEcCCCCCccchhhhhhhcccCCCCC--cEEEEeecchh
Q 010111 407 VVNYDKPAYIKTYIHRAGRTARAGQLG--RCFTLLHKDEV 444 (518)
Q Consensus 407 VI~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~e~ 444 (518)
||.+|...+|-.-.|.--|++|.|+.. .++-++++.-+
T Consensus 851 VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 851 VIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred EEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcH
Confidence 999999999999999999999999754 56777787665
No 129
>COG4889 Predicted helicase [General function prediction only]
Probab=99.83 E-value=2e-20 Score=186.50 Aligned_cols=351 Identities=18% Similarity=0.242 Sum_probs=200.4
Q ss_pred CCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcc
Q 010111 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (518)
Q Consensus 47 g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 126 (518)
.=.+|+|+|+.|+..++..+..+...=+.+.+|+|||++.+- +.+.+.. .++|+|+|+.+|..|..+++..-..
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~-----~~iL~LvPSIsLLsQTlrew~~~~~ 231 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA-----ARILFLVPSISLLSQTLREWTAQKE 231 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh-----hheEeecchHHHHHHHHHHHhhccC
Confidence 345899999999999998887765566667789999999654 5555544 3899999999999998777665422
Q ss_pred ccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHH-----hhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEE
Q 010111 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ-----ELQSAVDILVATPGRLMDHINATRGFTLEHLCYL 201 (518)
Q Consensus 127 ~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~v 201 (518)
+.+....++++.........+ +-.............+.+ .-..+--|+++|++.+...-.. ...-+..+++|
T Consensus 232 -l~~~a~aVcSD~kvsrs~eDi-k~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA-Qe~G~~~fDli 308 (1518)
T COG4889 232 -LDFRASAVCSDDKVSRSAEDI-KASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA-QEAGLDEFDLI 308 (1518)
T ss_pred -ccceeEEEecCcccccccccc-ccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH-HHcCCCCccEE
Confidence 356666667665543321111 111112222222222221 1123456999999998655443 23457789999
Q ss_pred EEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChh
Q 010111 202 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281 (518)
Q Consensus 202 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~ 281 (518)
|+||||+-....... .....|. +--.++.....+.+.|+||+.--.+
T Consensus 309 icDEAHRTtGa~~a~-----------dd~saFt----------------------~vHs~~niKa~kRlYmTATPkiy~e 355 (1518)
T COG4889 309 ICDEAHRTTGATLAG-----------DDKSAFT----------------------RVHSDQNIKAAKRLYMTATPKIYSE 355 (1518)
T ss_pred Eecchhccccceecc-----------cCcccce----------------------eecCcchhHHHHhhhcccCchhhch
Confidence 999999863221110 0000000 0001111122234566666531110
Q ss_pred ---hhhh-----------ccCCCCeEEeeCCccccCccccceeeee-------------------cCCCCcHHHH-----
Q 010111 282 ---KLAQ-----------LDLHHPLFLTTGETRYKLPERLESYKLI-------------------CESKLKPLYL----- 323 (518)
Q Consensus 282 ---~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~k~~~l----- 323 (518)
.-+. .....+.+...+.+.......+..|.+. .......+-.
T Consensus 356 S~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG 435 (1518)
T COG4889 356 SSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVG 435 (1518)
T ss_pred hhhhhhhhccceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhh
Confidence 0000 0011111111111111111111111111 0011111111
Q ss_pred --HHHHHhcC--------------CCcEEEEcCChhhHHHHHHHHhh------------cCCCceeEEEccccCChHHHH
Q 010111 324 --VALLQSLG--------------EEKCIVFTSSVESTHRLCTLLNH------------FGELRIKIKEYSGLQRQSVRS 375 (518)
Q Consensus 324 --~~~l~~~~--------------~~~~lVf~~s~~~~~~l~~~L~~------------~~~~~~~v~~~hg~~~~~~r~ 375 (518)
..+.++.. -.++|-||.++++...+++.+.. ...+.+.+..+.|.|+..+|.
T Consensus 436 ~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~ 515 (1518)
T COG4889 436 CWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERL 515 (1518)
T ss_pred hhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHH
Confidence 11111110 13789999999888888777643 123445666778999999996
Q ss_pred HHHHH---HhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCC-CCCcEEEEe
Q 010111 376 KTLKA---FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG-QLGRCFTLL 439 (518)
Q Consensus 376 ~~~~~---f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~~~ 439 (518)
..+.. |...+++||--...+++|||+|.++.||++++-.|..+.+|.+||+.|.. .+..+++++
T Consensus 516 ~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIIL 583 (1518)
T COG4889 516 DLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIIL 583 (1518)
T ss_pred HHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEE
Confidence 55443 34678999988899999999999999999999999999999999999963 223344444
No 130
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=2.1e-19 Score=175.03 Aligned_cols=296 Identities=21% Similarity=0.286 Sum_probs=187.5
Q ss_pred CCCCCEEEECCCCchHHHHhHHHHHHHhhhccc-CCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHH
Q 010111 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145 (518)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~-~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 145 (518)
..++-++|.+.||||||.. +-+.|...+. ...-+-+.-|.|.-|.-+++.... .++...+..+|.....+..
T Consensus 369 r~n~vvvivgETGSGKTTQ----l~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~---EM~~~lG~~VGYsIRFEdv 441 (1042)
T KOG0924|consen 369 RENQVVVIVGETGSGKTTQ----LAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAE---EMGVTLGDTVGYSIRFEDV 441 (1042)
T ss_pred hhCcEEEEEecCCCCchhh----hHHHHHhcccccCCeeeecCchHHHHHHHHHHHHH---HhCCccccccceEEEeeec
Confidence 3467789999999999987 3444444322 222344455888887776654432 2233333333332211111
Q ss_pred HHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhc
Q 010111 146 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (518)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~ 225 (518)
-.....|-++|-|.|+.-... .-.+..+++||+||||.-.-. .+.+.-++...
T Consensus 442 -----------------------T~~~T~IkymTDGiLLrEsL~--d~~L~kYSviImDEAHERslN--tDilfGllk~~ 494 (1042)
T KOG0924|consen 442 -----------------------TSEDTKIKYMTDGILLRESLK--DRDLDKYSVIIMDEAHERSLN--TDILFGLLKKV 494 (1042)
T ss_pred -----------------------CCCceeEEEeccchHHHHHhh--hhhhhheeEEEechhhhcccc--hHHHHHHHHHH
Confidence 113357889999999876554 235778999999999953110 11122222221
Q ss_pred ccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCcc
Q 010111 226 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPE 305 (518)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (518)
.... ..++.|++|||+ +...+...+.+-|.+...+. .++
T Consensus 495 larR-----------------------------------rdlKliVtSATm--~a~kf~nfFgn~p~f~IpGR-TyP--- 533 (1042)
T KOG0924|consen 495 LARR-----------------------------------RDLKLIVTSATM--DAQKFSNFFGNCPQFTIPGR-TYP--- 533 (1042)
T ss_pred HHhh-----------------------------------ccceEEEeeccc--cHHHHHHHhCCCceeeecCC-ccc---
Confidence 1111 134789999998 55566655554454433322 111
Q ss_pred ccceeeeecCCCCcHHHHHHHHH-------hcCCCcEEEEcCChhhHHHHHHH----HhhcC---CCceeEEEccccCCh
Q 010111 306 RLESYKLICESKLKPLYLVALLQ-------SLGEEKCIVFTSSVESTHRLCTL----LNHFG---ELRIKIKEYSGLQRQ 371 (518)
Q Consensus 306 ~~~~~~~~~~~~~k~~~l~~~l~-------~~~~~~~lVf~~s~~~~~~l~~~----L~~~~---~~~~~v~~~hg~~~~ 371 (518)
+...+. .....+++...++ ....+.+|||....+..+..+.. |.+.. ..+..+..+.+.+|+
T Consensus 534 -V~~~~~---k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~ 609 (1042)
T KOG0924|consen 534 -VEIMYT---KTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPA 609 (1042)
T ss_pred -eEEEec---cCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCch
Confidence 111111 1222233333333 22457899999877665555444 43332 235789999999999
Q ss_pred HHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCC------------------CCCccchhhhhhhcccCCCCC
Q 010111 372 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK------------------PAYIKTYIHRAGRTARAGQLG 433 (518)
Q Consensus 372 ~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~------------------p~s~~~~~Qr~GR~gR~g~~g 433 (518)
.-..++++.-..|..+++|||++++..+.+|++.+||..++ |.|.+.--||.|||||.| +|
T Consensus 610 dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG 688 (1042)
T KOG0924|consen 610 DLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PG 688 (1042)
T ss_pred hhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Cc
Confidence 99888888888899999999999999999999999997553 567778899999999996 99
Q ss_pred cEEEEeecc
Q 010111 434 RCFTLLHKD 442 (518)
Q Consensus 434 ~~~~~~~~~ 442 (518)
.|+-+++++
T Consensus 689 ~cYRlYTe~ 697 (1042)
T KOG0924|consen 689 TCYRLYTED 697 (1042)
T ss_pred ceeeehhhh
Confidence 999999864
No 131
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=3.4e-18 Score=175.22 Aligned_cols=131 Identities=27% Similarity=0.299 Sum_probs=101.2
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
+|. .|+++|.-. .+.-++.-+..+.||.|||+++.+|++-+...+ ..|-|++++..||..-++++..+.
T Consensus 82 lG~-r~ydVQliG------gl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~G----kgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 82 LGM-RHFDVQLIG------GMVLHEGQIAEMKTGEGKTLVATLPSYLNALTG----KGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred hCC-CcchhHHHh------hhhhcCCceeeecCCCChhHHHHHHHHHHhhcC----CCeEEEeCCHHHHHhHHHHHHHHH
Confidence 565 788889543 333466779999999999999999998665543 369999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHH-----HHhHhc-CCCCCCCccc
Q 010111 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-----MDHINA-TRGFTLEHLC 199 (518)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l-----~~~l~~-~~~~~~~~~~ 199 (518)
..+|++|++..++.+...+. ....+||+++|+..| .+.+.. ........+.
T Consensus 151 ~~LGLtvg~i~~~~~~~err-----------------------~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~ 207 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEERK-----------------------KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFN 207 (939)
T ss_pred HHhCCeEEEECCCCChHHHH-----------------------HhcCCCeEEecCCcccccchhhhhcccccccccCccc
Confidence 99999999998877655543 235789999999877 333332 1223457788
Q ss_pred EEEEechhHhh
Q 010111 200 YLVVDETDRLL 210 (518)
Q Consensus 200 ~vViDEah~~~ 210 (518)
+.|+||+|.++
T Consensus 208 faIVDEvDSIL 218 (939)
T PRK12902 208 YCVIDEVDSIL 218 (939)
T ss_pred eEEEeccccee
Confidence 99999999763
No 132
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.82 E-value=4.4e-18 Score=173.14 Aligned_cols=85 Identities=19% Similarity=0.229 Sum_probs=69.5
Q ss_pred hHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc-cc--cCce
Q 010111 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA-PA--VGLS 131 (518)
Q Consensus 55 Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~--~~~~ 131 (518)
|.+.+..+...+..++.+++.||||+|||++|++|++..+... .+.++||++||++|+.|+.+.+..+. +. .+++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~--~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~ 79 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER--PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQ 79 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc--cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCee
Confidence 6677777776666789999999999999999999999877642 24589999999999999999988887 33 3577
Q ss_pred EEEeecCCch
Q 010111 132 VGLAVGQSSI 141 (518)
Q Consensus 132 v~~~~g~~~~ 141 (518)
+.++.|..++
T Consensus 80 ~~~lkGr~nY 89 (636)
T TIGR03117 80 AGFFPGSQEF 89 (636)
T ss_pred EEEEECCccc
Confidence 7888887664
No 133
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.82 E-value=3.4e-18 Score=185.45 Aligned_cols=159 Identities=16% Similarity=0.151 Sum_probs=105.6
Q ss_pred CCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHH-H---HH
Q 010111 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD-V---FA 122 (518)
Q Consensus 47 g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~-~---~~ 122 (518)
|| +++|-|.+.+..+...+..++.+++.||||+|||++|++|++..... .+.+++|.++|+.|.+|+.. . +.
T Consensus 255 ~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~---~~~~vvIsT~T~~LQ~Ql~~kDiP~L~ 330 (928)
T PRK08074 255 KY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK---KEEPVVISTYTIQLQQQLLEKDIPLLQ 330 (928)
T ss_pred CC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc---cCCeEEEEcCCHHHHHHHHHhhHHHHH
Confidence 56 89999999888777777788999999999999999999999866543 23479999999999999865 3 34
Q ss_pred HhccccCceEEEeecCCchHHH--HHH--------------------hhc-------------------------CCccc
Q 010111 123 AIAPAVGLSVGLAVGQSSIADE--ISE--------------------LIK-------------------------RPKLE 155 (518)
Q Consensus 123 ~~~~~~~~~v~~~~g~~~~~~~--~~~--------------------~~~-------------------------~~~~~ 155 (518)
+.+. .++++.++.|..++-.. ... +.. .+...
T Consensus 331 ~~~~-~~~~~~~lKGr~nYlcl~k~~~~l~~~~~~~~~~~~~~~ll~Wl~~T~tGD~dEl~~~~~~~~~w~~i~~~~~~c 409 (928)
T PRK08074 331 KIFP-FPVEAALLKGRSHYLCLRKFEQALQEEDDNYDVALTKAQLLVWLTETETGDLDELNLPSGGKLLWNRIASDGESD 409 (928)
T ss_pred HHcC-CCceEEEEEcccccccHHHHHHHHhccCCCHHHHHHHHHHHHHHccCCCCCHHHccCCCCCcchHHHhhccCccc
Confidence 4332 24677777776552110 000 000 00000
Q ss_pred cCccCC-----chhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhh
Q 010111 156 AGICYD-----PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211 (518)
Q Consensus 156 ~~~~~~-----~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~ 211 (518)
.+..+. .-...+.-...+||+|+++..|+..+.... -.+...+++||||||++-+
T Consensus 410 ~~~~cp~~~~Cf~~~ar~~a~~AdivItNHalLl~dl~~~~-~ilp~~~~lViDEAH~l~d 469 (928)
T PRK08074 410 GGKQSPWFSRCFYQRAKNRAKFADLVITNHALLLTDLTSEE-PLLPSYEHIIIDEAHHFEE 469 (928)
T ss_pred CCCCCCcccccHHHHHHHHHhcCCEEEECHHHHHHHHhhhc-ccCCCCCeEEEECCchHHH
Confidence 000000 111123334568999999999888774422 2356689999999998754
No 134
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.80 E-value=8.1e-18 Score=171.36 Aligned_cols=81 Identities=20% Similarity=0.248 Sum_probs=72.2
Q ss_pred ceeEEEccccCChHHHHHHHHHHhcCCc--eE-EEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcE
Q 010111 359 RIKIKEYSGLQRQSVRSKTLKAFREGKI--QV-LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 435 (518)
Q Consensus 359 ~~~v~~~hg~~~~~~r~~~~~~f~~g~~--~v-LvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~ 435 (518)
++.+..+||.++..+|+.+++.|.+... .| |.+|.+.++||++-+.+-||.||++|+|+.-.|.++|+.|.|+.-.|
T Consensus 619 g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v 698 (776)
T KOG0390|consen 619 GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPV 698 (776)
T ss_pred CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceE
Confidence 4899999999999999999999996432 44 77888899999999999999999999999999999999999988776
Q ss_pred EEEe
Q 010111 436 FTLL 439 (518)
Q Consensus 436 ~~~~ 439 (518)
+++=
T Consensus 699 ~iYr 702 (776)
T KOG0390|consen 699 YIYR 702 (776)
T ss_pred EEEE
Confidence 6543
No 135
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.80 E-value=2.9e-18 Score=176.87 Aligned_cols=367 Identities=18% Similarity=0.172 Sum_probs=211.5
Q ss_pred ccchhhHHHHHHhhCCCC-CCCCEEEECCCCchHHHHhHHHHHHHhhhcc-----cCCccEEEEcCcHHHHHHHHHHHHH
Q 010111 50 SLFPVQVAVWQETIGPGL-FERDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVLPTRDLALQVKDVFAA 123 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~-~~~~~li~apTGsGKT~~~~l~~~~~l~~~~-----~~~~~~lil~Pt~~La~Q~~~~~~~ 123 (518)
.++.||++-+..+. -+. -+=+.++|...|.|||+..+..+.....++. ......||+||+ .|+--|..++.+
T Consensus 975 ~LRkYQqEGVnWLa-FLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~k 1052 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLA-FLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKK 1052 (1549)
T ss_pred HHHHHHHhccHHHH-HHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHH
Confidence 47889998865432 111 1347899999999999975544443333321 123348999998 788889999999
Q ss_pred hccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEE
Q 010111 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (518)
Q Consensus 124 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vVi 203 (518)
+++. +++..++|........+ .--.+++|+|++++.+.+.... +.-.++.|.|+
T Consensus 1053 f~pf--L~v~~yvg~p~~r~~lR---------------------~q~~~~~iiVtSYDv~RnD~d~---l~~~~wNYcVL 1106 (1549)
T KOG0392|consen 1053 FFPF--LKVLQYVGPPAERRELR---------------------DQYKNANIIVTSYDVVRNDVDY---LIKIDWNYCVL 1106 (1549)
T ss_pred hcch--hhhhhhcCChHHHHHHH---------------------hhccccceEEeeHHHHHHHHHH---HHhcccceEEe
Confidence 9987 67777787765444332 2234579999999998754433 11224779999
Q ss_pred echhHhhhHhHH--hHHHHHHHhcc-----cccccc----cCCcccccccccccchhhhc-cc-----------------
Q 010111 204 DETDRLLREAYQ--AWLPTVLQLTR-----SDNENR----FSDASTFLPSAFGSLKTIRR-CG----------------- 254 (518)
Q Consensus 204 DEah~~~~~~~~--~~~~~i~~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~----------------- 254 (518)
||.|-+-+.... ..+..+...-+ ++-.+. ++.+.-.+|++.+.=+.+.. ++
T Consensus 1107 DEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~E 1186 (1549)
T KOG0392|consen 1107 DEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQE 1186 (1549)
T ss_pred cCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHH
Confidence 999977543321 11222211100 000000 00000012222111100000 00
Q ss_pred -------------c--------ccCCCCCCCCceeeEEE---------------------eEeec-----CCh-------
Q 010111 255 -------------V--------ERGFKDKPYPRLVKMVL---------------------SATLT-----QDP------- 280 (518)
Q Consensus 255 -------------~--------~~~~~~~~~~~~~~i~~---------------------SaT~~-----~~~------- 280 (518)
+ .+-+.+.|.+-+|-... |.+.. ...
T Consensus 1187 aG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFq 1266 (1549)
T KOG0392|consen 1187 AGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQ 1266 (1549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHH
Confidence 0 00001111111111110 00000 000
Q ss_pred -hhhhhccCCCCeEEeeCCc--cccCccccceee---eecCCCCcHHHHHHHHHhc----------------CCCcEEEE
Q 010111 281 -NKLAQLDLHHPLFLTTGET--RYKLPERLESYK---LICESKLKPLYLVALLQSL----------------GEEKCIVF 338 (518)
Q Consensus 281 -~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~k~~~l~~~l~~~----------------~~~~~lVf 338 (518)
-.......++|..+..... .......+.+.. .......|...|..++... ..+++|||
T Consensus 1267 aLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIF 1346 (1549)
T KOG0392|consen 1267 ALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIF 1346 (1549)
T ss_pred HHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEe
Confidence 0011112222322222100 000000000000 0112345566666666432 24699999
Q ss_pred cCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcC-CceE-EEEcCccccCCCCCCCCEEEEcCCCCCc
Q 010111 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQV-LVSSDAMTRGMDVEGVNNVVNYDKPAYI 416 (518)
Q Consensus 339 ~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g-~~~v-LvaT~~~~~GiDip~v~~VI~~~~p~s~ 416 (518)
|.-+..++-+.+-|-+.....+....+.|+.++.+|.++.++|.++ .++| |++|.+.+-|+|+.+.+.||+++..|++
T Consensus 1347 cQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNP 1426 (1549)
T KOG0392|consen 1347 CQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNP 1426 (1549)
T ss_pred eeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCc
Confidence 9999999999988866544456667899999999999999999998 7888 5777899999999999999999999999
Q ss_pred cchhhhhhhcccCCCCCc--EEEEeecchh
Q 010111 417 KTYIHRAGRTARAGQLGR--CFTLLHKDEV 444 (518)
Q Consensus 417 ~~~~Qr~GR~gR~g~~g~--~~~~~~~~e~ 444 (518)
..-.|.+-||+|-|++.. ++-+++.+-.
T Consensus 1427 MrDLQAMDRAHRIGQKrvVNVyRlItrGTL 1456 (1549)
T KOG0392|consen 1427 MRDLQAMDRAHRIGQKRVVNVYRLITRGTL 1456 (1549)
T ss_pred hhhHHHHHHHHhhcCceeeeeeeehhcccH
Confidence 999999999999998764 6666765443
No 136
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.79 E-value=7.4e-18 Score=151.88 Aligned_cols=187 Identities=34% Similarity=0.539 Sum_probs=139.2
Q ss_pred hCCCCccchhhHHHHHHhhCCCCCC-CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHH
Q 010111 45 NMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (518)
Q Consensus 45 ~~g~~~~~~~Q~~a~~~~~~~~~~~-~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 123 (518)
.+++..++++|.+++..+.. . +++++.+|||+|||.++..++++.+.... ..+++|++|++.++.|+.+.+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~----~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~--~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLS----GLRDVILAAPTGSGKTLAALLPALEALKRGK--GKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHc----CCCcEEEECCCCCchhHHHHHHHHHHhcccC--CCcEEEEeCCHHHHHHHHHHHHH
Confidence 45678999999999888774 4 89999999999999999999998877642 34799999999999999999998
Q ss_pred hccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCC-cEEEeCChHHHHhHhcCCCCCCCcccEEE
Q 010111 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV-DILVATPGRLMDHINATRGFTLEHLCYLV 202 (518)
Q Consensus 124 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vV 202 (518)
++...........++........ ....+. +|+++|++.+.+.+... ......++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~v~~~t~~~l~~~~~~~-~~~~~~~~~iI 134 (201)
T smart00487 77 LGPSLGLKVVGLYGGDSKREQLR---------------------KLESGKTDILVTTPGRLLDLLEND-LLELSNVDLVI 134 (201)
T ss_pred HhccCCeEEEEEeCCcchHHHHH---------------------HHhcCCCCEEEeChHHHHHHHHcC-CcCHhHCCEEE
Confidence 87655434444444443322222 223344 99999999999988873 35677889999
Q ss_pred EechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhh
Q 010111 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 282 (518)
Q Consensus 203 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~ 282 (518)
+||||.+....+...+..++..+. +..+.+++|||++.+...
T Consensus 135 iDE~h~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~v~~saT~~~~~~~ 176 (201)
T smart00487 135 LDEAHRLLDGGFGDQLEKLLKLLP--------------------------------------KNVQLLLLSATPPEEIEN 176 (201)
T ss_pred EECHHHHhcCCcHHHHHHHHHhCC--------------------------------------ccceEEEEecCCchhHHH
Confidence 999999876455566666665441 122679999999888888
Q ss_pred hhhccCCCCeEEeeC
Q 010111 283 LAQLDLHHPLFLTTG 297 (518)
Q Consensus 283 ~~~~~~~~~~~~~~~ 297 (518)
...........+...
T Consensus 177 ~~~~~~~~~~~~~~~ 191 (201)
T smart00487 177 LLELFLNDPVFIDVG 191 (201)
T ss_pred HHHHhcCCCEEEeCC
Confidence 777776665555444
No 137
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.78 E-value=1.8e-18 Score=144.57 Aligned_cols=118 Identities=39% Similarity=0.570 Sum_probs=108.4
Q ss_pred CcHHHHHHHHHhcC--CCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCcc
Q 010111 318 LKPLYLVALLQSLG--EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395 (518)
Q Consensus 318 ~k~~~l~~~l~~~~--~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 395 (518)
.|...+..++.... ++++||||++...++.+++.|...+ ..+..+||+++..+|..+++.|.+|...+|++|+++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPG---IKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcC---CcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChh
Confidence 67777778777653 7899999999999999999998743 789999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEE
Q 010111 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438 (518)
Q Consensus 396 ~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~ 438 (518)
++|+|+|.+++||+++.|++...|.|++||++|.|+.|.++++
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998887754
No 138
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.77 E-value=1.1e-16 Score=168.35 Aligned_cols=90 Identities=23% Similarity=0.174 Sum_probs=66.9
Q ss_pred CCCccchhhHHHHHHhhCCCCC-----CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHH-HH
Q 010111 47 GISSLFPVQVAVWQETIGPGLF-----ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK-DV 120 (518)
Q Consensus 47 g~~~~~~~Q~~a~~~~~~~~~~-----~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~-~~ 120 (518)
|| ++++-|.+.+..+...+.. ++.++|.||||+|||++|++|++-..... +.+++|-+.|+.|-+|+. +.
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~---~k~vVIST~T~~LQeQL~~kD 98 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAE---KKKLVISTATVALQEQLVSKD 98 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHc---CCeEEEEcCCHHHHHHHHhhh
Confidence 66 8999999988877766655 47789999999999999999998665532 347999999999999985 44
Q ss_pred HHHhcccc--CceEEEeecCCc
Q 010111 121 FAAIAPAV--GLSVGLAVGQSS 140 (518)
Q Consensus 121 ~~~~~~~~--~~~v~~~~g~~~ 140 (518)
+-.+.+.+ .+++.++-|...
T Consensus 99 lP~l~~~l~~~~~~~llKGr~n 120 (697)
T PRK11747 99 LPLLLKISGLDFKFTLAKGRGR 120 (697)
T ss_pred hhHHHHHcCCCceEEEEcCccc
Confidence 44333322 355666555443
No 139
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.75 E-value=2.3e-17 Score=157.80 Aligned_cols=269 Identities=21% Similarity=0.257 Sum_probs=176.2
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhh
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 149 (518)
+-++-++||.||||.- +++++...+ +.+|.-|.|-||..+++.+... |+.+.+++|.......
T Consensus 192 kIi~H~GPTNSGKTy~----ALqrl~~ak----sGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~----- 254 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYR----ALQRLKSAK----SGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVL----- 254 (700)
T ss_pred eEEEEeCCCCCchhHH----HHHHHhhhc----cceecchHHHHHHHHHHHhhhc----CCCccccccceeeecC-----
Confidence 3355699999999987 566665543 6799999999999999988886 7788888886542221
Q ss_pred cCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHH-hHHHHHHHhcccc
Q 010111 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ-AWLPTVLQLTRSD 228 (518)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~-~~~~~i~~~~~~~ 228 (518)
.-...++.+-||-++. . --..+++.||||+++|.+..++ .|...++...+..
T Consensus 255 ------------------~~~~~a~hvScTVEM~----s-----v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdE 307 (700)
T KOG0953|consen 255 ------------------DNGNPAQHVSCTVEMV----S-----VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADE 307 (700)
T ss_pred ------------------CCCCcccceEEEEEEe----e-----cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhh
Confidence 0012367888886654 1 1234789999999999887765 5666666654321
Q ss_pred cccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccC---CCCeEEeeCCccccCcc
Q 010111 229 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL---HHPLFLTTGETRYKLPE 305 (518)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 305 (518)
- ..| +. +.+..+....+ .+.+.+.
T Consensus 308 i---------------------HLC--------------------Ge--psvldlV~~i~k~TGd~vev~---------- 334 (700)
T KOG0953|consen 308 I---------------------HLC--------------------GE--PSVLDLVRKILKMTGDDVEVR---------- 334 (700)
T ss_pred h---------------------hcc--------------------CC--chHHHHHHHHHhhcCCeeEEE----------
Confidence 0 000 00 01111111111 0100000
Q ss_pred ccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhc--
Q 010111 306 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE-- 383 (518)
Q Consensus 306 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~-- 383 (518)
.| ....+-.-.+.+..-+.+...+-+||-+ |++....+...+...+. .+++++.|++|++.|.+.-..|.+
T Consensus 335 ---~Y-eRl~pL~v~~~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~g~--~k~aVIYGsLPPeTr~aQA~~FNd~~ 407 (700)
T KOG0953|consen 335 ---EY-ERLSPLVVEETALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKAGN--HKCAVIYGSLPPETRLAQAALFNDPS 407 (700)
T ss_pred ---ee-cccCcceehhhhhhhhccCCCCCeEEEe-ehhhHHHHHHHHHHhcC--cceEEEecCCCCchhHHHHHHhCCCC
Confidence 00 0001111111233444555566676644 57788888888887662 569999999999999999999997
Q ss_pred CCceEEEEcCccccCCCCCCCCEEEEcCCC---------CCccchhhhhhhcccCCC---CCcEEEEeecchh
Q 010111 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKP---------AYIKTYIHRAGRTARAGQ---LGRCFTLLHKDEV 444 (518)
Q Consensus 384 g~~~vLvaT~~~~~GiDip~v~~VI~~~~p---------~s~~~~~Qr~GR~gR~g~---~g~~~~~~~~~e~ 444 (518)
++++||||||+.++|+|+. ++-||++++- .+..+..|.+|||||.|. .|.+.+|-. +|.
T Consensus 408 ~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~-eDL 478 (700)
T KOG0953|consen 408 NECDVLVASDAIGMGLNLN-IRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS-EDL 478 (700)
T ss_pred CccceEEeecccccccccc-eeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeH-hhH
Confidence 8999999999999999995 8888888754 345578999999999873 465555543 444
No 140
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.75 E-value=2.1e-18 Score=129.49 Aligned_cols=77 Identities=36% Similarity=0.627 Sum_probs=73.1
Q ss_pred HHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCC
Q 010111 351 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430 (518)
Q Consensus 351 ~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g 430 (518)
+|+..+ +.+..+||+++..+|..+++.|++++..|||||+++++|+|+|.+++||++++|+++..|.|++||++|.|
T Consensus 2 ~L~~~~---~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEKKG---IKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHTT---SSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChHHCC---CcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 455555 89999999999999999999999999999999999999999999999999999999999999999999986
No 141
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.74 E-value=3e-16 Score=148.10 Aligned_cols=104 Identities=17% Similarity=0.196 Sum_probs=92.6
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcC-CceE-EEEcCccccCCCCCCCCEEE
Q 010111 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQV-LVSSDAMTRGMDVEGVNNVV 408 (518)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g-~~~v-LvaT~~~~~GiDip~v~~VI 408 (518)
++.+.+|||......+.+...+++.+ +....+.|..+..+|....+.|+.. +..| +++..+++.|+++...++|+
T Consensus 491 ~~~KflVFaHH~~vLd~Iq~~~~~r~---vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VV 567 (689)
T KOG1000|consen 491 PPRKFLVFAHHQIVLDTIQVEVNKRK---VGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVV 567 (689)
T ss_pred CCceEEEEehhHHHHHHHHHHHHHcC---CCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEE
Confidence 45699999999999999999998876 8888999999999999999999954 5666 67778899999999999999
Q ss_pred EcCCCCCccchhhhhhhcccCCCCCcEEE
Q 010111 409 NYDKPAYIKTYIHRAGRTARAGQLGRCFT 437 (518)
Q Consensus 409 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~ 437 (518)
+..+++++.-++|.=.|+.|.|+...+.+
T Consensus 568 FaEL~wnPgvLlQAEDRaHRiGQkssV~v 596 (689)
T KOG1000|consen 568 FAELHWNPGVLLQAEDRAHRIGQKSSVFV 596 (689)
T ss_pred EEEecCCCceEEechhhhhhccccceeeE
Confidence 99999999999999999999998765433
No 142
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=3.3e-16 Score=162.47 Aligned_cols=181 Identities=14% Similarity=0.165 Sum_probs=123.6
Q ss_pred EEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHh--cCCCcEEEEcCChhhHHH
Q 010111 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHR 347 (518)
Q Consensus 270 i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~~~~~~ 347 (518)
-.||+|......++...+-...+.+.+... ..... ..-.+......|...+...+.. ..+.|+||-+.|++..+.
T Consensus 567 sGMTGTA~tea~Ef~~IY~L~Vv~IPTnrP--~~R~D-~~D~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~ 643 (1112)
T PRK12901 567 AGMTGTAETEAGEFWDIYKLDVVVIPTNRP--IARKD-KEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISEL 643 (1112)
T ss_pred cccCCCCHHHHHHHHHHhCCCEEECCCCCC--cceec-CCCeEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHH
Confidence 456777655555555544444333333221 11111 1112233445666666655543 357899999999999999
Q ss_pred HHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCC--------CCCEEEEcCCCCCccch
Q 010111 348 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE--------GVNNVVNYDKPAYIKTY 419 (518)
Q Consensus 348 l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip--------~v~~VI~~~~p~s~~~~ 419 (518)
++++|...+ ++..++++.....+-+-+-++-+.| .|-|||++++||.||. +==+||....+.|..--
T Consensus 644 lS~~L~~~g---I~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID 718 (1112)
T PRK12901 644 LSRMLKMRK---IPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVD 718 (1112)
T ss_pred HHHHHHHcC---CcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHH
Confidence 999999876 7777777776655555555544444 7899999999999997 22379999999999999
Q ss_pred hhhhhhcccCCCCCcEEEEeecchhHH----HHHHHHHHHhhc
Q 010111 420 IHRAGRTARAGQLGRCFTLLHKDEVCL----VKRFKKLLQKAD 458 (518)
Q Consensus 420 ~Qr~GR~gR~g~~g~~~~~~~~~e~~~----~~~~~~~l~~~~ 458 (518)
.|-.||+||.|.+|.+-.|++-+|--+ -+++.+++....
T Consensus 719 ~QLrGRaGRQGDPGsS~f~lSLEDdLmr~Fgs~ri~~~m~~~g 761 (1112)
T PRK12901 719 RQLRGRAGRQGDPGSSQFYVSLEDNLMRLFGSERIAKVMDRMG 761 (1112)
T ss_pred HHHhcccccCCCCCcceEEEEcccHHHHhhCcHHHHHHHHHcC
Confidence 999999999999999999998776422 234566666544
No 143
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.73 E-value=3.4e-16 Score=166.26 Aligned_cols=78 Identities=23% Similarity=0.210 Sum_probs=65.2
Q ss_pred HhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHH
Q 010111 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (518)
Q Consensus 44 ~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 123 (518)
..+...++++.|.+.+..+...+..++.+++.||||+|||++|++|++...... +.+++|.++|+.|.+|+.+....
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~---~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE---GKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc---CCcEEEECCCHHHHHHHHHhhcc
Confidence 445555999999999988776666777899999999999999999999876654 35799999999999999877655
Q ss_pred h
Q 010111 124 I 124 (518)
Q Consensus 124 ~ 124 (518)
+
T Consensus 86 ~ 86 (654)
T COG1199 86 I 86 (654)
T ss_pred h
Confidence 3
No 144
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=3.7e-17 Score=156.54 Aligned_cols=353 Identities=14% Similarity=0.080 Sum_probs=220.6
Q ss_pred HHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHH
Q 010111 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (518)
Q Consensus 37 ~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q 116 (518)
+.+...++++.-+..+.+|.+++..+- +|+++++.-.|.+||.+++.+.....+... .....++..|+.++++.
T Consensus 273 E~~~~~~~~~~~E~~~~~~~~~~~~~~----~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~--~~s~~~~~~~~~~~~~~ 346 (1034)
T KOG4150|consen 273 ESIRSLLNKNTGESGIAISLELLKFAS----EGRADGGNEARQAGKGTCPTSGSRKFQTLC--HATNSLLPSEMVEHLRN 346 (1034)
T ss_pred HHHHHHHhcccccchhhhhHHHHhhhh----hcccccccchhhcCCccCcccchhhhhhcC--cccceecchhHHHHhhc
Confidence 345556667766788899999865544 699999999999999999999888776554 34468999999999876
Q ss_pred HHHHHHHhcccc----CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCC-
Q 010111 117 VKDVFAAIAPAV----GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR- 191 (518)
Q Consensus 117 ~~~~~~~~~~~~----~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~- 191 (518)
..+.+.-..... +--|...-|.+...+ ....+.+.+++++.|......+....
T Consensus 347 ~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~----------------------~A~~R~~~~~~~s~~~~~~s~~L~~~~ 404 (1034)
T KOG4150|consen 347 GSKGQVVHVEVIKARKSAYVEMSDKLSETTK----------------------SALKRIGLNTLYSHQAEAISAALAKSL 404 (1034)
T ss_pred cCCceEEEEEehhhhhcceeecccCCCchhH----------------------HHHHhcCcceeecCHHHHHHHHhhhcc
Confidence 544322211111 011111112211111 12334578999999998876553311
Q ss_pred --CCCCCcccEEEEechhHhhhHhHHh----HHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCC
Q 010111 192 --GFTLEHLCYLVVDETDRLLREAYQA----WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265 (518)
Q Consensus 192 --~~~~~~~~~vViDEah~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (518)
...+-+..+++.||+|..+.. ++. .+..++.+...-.. ..
T Consensus 405 ~~~~~~~~~~~~~~~~~~~Y~~~-~~~~~~~~~R~L~~L~~~F~~---------------------------------~~ 450 (1034)
T KOG4150|consen 405 CYNVPVFEELCKDTNSCALYLFP-TKALAQDQLRALSDLIKGFEA---------------------------------SI 450 (1034)
T ss_pred ccccHHHHHHHhcccceeeeecc-hhhHHHHHHHHHHHHHHHHHh---------------------------------hc
Confidence 122345668999999965432 222 23333332211000 01
Q ss_pred ceeeEEEeEeecCChhhhhhc-cCCCCeEEeeCCccccCccccceeeeecCC---------CCcHHHHHHHHHhc--CCC
Q 010111 266 RLVKMVLSATLTQDPNKLAQL-DLHHPLFLTTGETRYKLPERLESYKLICES---------KLKPLYLVALLQSL--GEE 333 (518)
Q Consensus 266 ~~~~i~~SaT~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~k~~~l~~~l~~~--~~~ 333 (518)
.++.+--++|+.......... .+.....+.... .|..-.++.++.++ +.+......++.+. .+-
T Consensus 451 ~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DG----SPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~ 526 (1034)
T KOG4150|consen 451 NMGVYDGDTPYKDRTRLRSELANLSELELVTIDG----SPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGL 526 (1034)
T ss_pred CcceEeCCCCcCCHHHHHHHhcCCcceEEEEecC----CCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCC
Confidence 225555666665443333222 222222222221 12333344443321 12222233333221 356
Q ss_pred cEEEEcCChhhHHHHHHHHhhcC----C-CceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEE
Q 010111 334 KCIVFTSSVESTHRLCTLLNHFG----E-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 408 (518)
Q Consensus 334 ~~lVf~~s~~~~~~l~~~L~~~~----~-~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI 408 (518)
++|-||++++.|+.+....++.. . +--.+..+.|+...++|..+...+-.|+..-+|+|++++-||||.+++.|+
T Consensus 527 R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl 606 (1034)
T KOG4150|consen 527 RCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVL 606 (1034)
T ss_pred cEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEE
Confidence 99999999999999887765421 1 001345678999999999999999999999999999999999999999999
Q ss_pred EcCCCCCccchhhhhhhcccCCCCCcEEEEe--ecchhHHHHHHHHHHH
Q 010111 409 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLL--HKDEVCLVKRFKKLLQ 455 (518)
Q Consensus 409 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~--~~~e~~~~~~~~~~l~ 455 (518)
..++|.|...+.|..||+||.+++..++.++ .|-|..++..-..++.
T Consensus 607 ~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~ 655 (1034)
T KOG4150|consen 607 HLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFG 655 (1034)
T ss_pred EccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhC
Confidence 9999999999999999999999887665555 4566655554444443
No 145
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.71 E-value=4.7e-16 Score=146.57 Aligned_cols=331 Identities=20% Similarity=0.260 Sum_probs=195.5
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccC
Q 010111 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (518)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~ 100 (518)
.+.|.+.+ .++..-+.+++..--..+. |++-+ ++.+.+++-+++++.||||||...--.+++......
T Consensus 24 ~Npf~~~p------~s~rY~~ilk~R~~LPvw~-~k~~F---~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-- 91 (699)
T KOG0925|consen 24 INPFNGKP------YSQRYYDILKKRRELPVWE-QKEEF---LKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-- 91 (699)
T ss_pred cCCCCCCc------CcHHHHHHHHHHhcCchHH-hHHHH---HHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc--
Confidence 34455555 5667777777643222222 33333 333346788999999999999865444554443321
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
..+...-|.|.-|.+++... ++..++..+--+|.....+.+ .++. .-.-+||-
T Consensus 92 -~~v~CTQprrvaamsva~RV---adEMDv~lG~EVGysIrfEdC--------------~~~~---------T~Lky~tD 144 (699)
T KOG0925|consen 92 -TGVACTQPRRVAAMSVAQRV---ADEMDVTLGEEVGYSIRFEDC--------------TSPN---------TLLKYCTD 144 (699)
T ss_pred -cceeecCchHHHHHHHHHHH---HHHhccccchhcccccccccc--------------CChh---------HHHHHhcc
Confidence 34667778888877765433 333455555555554332221 1111 11225777
Q ss_pred hHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCC
Q 010111 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (518)
++|+.-..+ ...+..+.+||+||||.-.- -.+.+.-+++.....
T Consensus 145 gmLlrEams--~p~l~~y~viiLDeahERtl--ATDiLmGllk~v~~~-------------------------------- 188 (699)
T KOG0925|consen 145 GMLLREAMS--DPLLGRYGVIILDEAHERTL--ATDILMGLLKEVVRN-------------------------------- 188 (699)
T ss_pred hHHHHHHhh--CcccccccEEEechhhhhhH--HHHHHHHHHHHHHhh--------------------------------
Confidence 777665554 24578899999999995310 011122222221111
Q ss_pred CCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHH----HHHHHHhcCCCcEE
Q 010111 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY----LVALLQSLGEEKCI 336 (518)
Q Consensus 261 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~----l~~~l~~~~~~~~l 336 (518)
.+.++.+++|||+ +...+...+...|.....+. ..++.++....+.+-++. +..+......+-+|
T Consensus 189 ---rpdLk~vvmSatl--~a~Kfq~yf~n~Pll~vpg~------~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDil 257 (699)
T KOG0925|consen 189 ---RPDLKLVVMSATL--DAEKFQRYFGNAPLLAVPGT------HPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDIL 257 (699)
T ss_pred ---CCCceEEEeeccc--chHHHHHHhCCCCeeecCCC------CceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEE
Confidence 1455889999997 45555554555554432221 122333333233222222 22222334578999
Q ss_pred EEcCChhhHHHHHHHHhh----cC--CCceeEEEccccCChHHHHHHHHHHhc---C--CceEEEEcCccccCCCCCCCC
Q 010111 337 VFTSSVESTHRLCTLLNH----FG--ELRIKIKEYSGLQRQSVRSKTLKAFRE---G--KIQVLVSSDAMTRGMDVEGVN 405 (518)
Q Consensus 337 Vf~~s~~~~~~l~~~L~~----~~--~~~~~v~~~hg~~~~~~r~~~~~~f~~---g--~~~vLvaT~~~~~GiDip~v~ 405 (518)
||....++.+..++.+.. ++ ....+|..+| +.+.+.+++.... | ..+|+|+|++++..+-++++.
T Consensus 258 vFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv 333 (699)
T KOG0925|consen 258 VFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIV 333 (699)
T ss_pred EEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEE
Confidence 999999888888777753 21 1235677777 3333333332221 2 358999999999999999999
Q ss_pred EEEEcCC------------------CCCccchhhhhhhcccCCCCCcEEEEeecc
Q 010111 406 NVVNYDK------------------PAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442 (518)
Q Consensus 406 ~VI~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 442 (518)
+||.-++ |.|...-.||.||+||. ++|.|+.+++++
T Consensus 334 ~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 334 FVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred EEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 9997443 56777889999999998 799999999854
No 146
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.70 E-value=2.3e-16 Score=163.49 Aligned_cols=318 Identities=17% Similarity=0.232 Sum_probs=204.1
Q ss_pred chhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHH-HHhccccCc
Q 010111 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF-AAIAPAVGL 130 (518)
Q Consensus 52 ~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~-~~~~~~~~~ 130 (518)
.|+|.++++...+ .+.++++.+|+|||||.++-++++. +....++++++|.-+.+..++..+ +++....|.
T Consensus 1145 n~iqtqVf~~~y~---~nd~v~vga~~gsgkt~~ae~a~l~-----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~ 1216 (1674)
T KOG0951|consen 1145 NPIQTQVFTSLYN---TNDNVLVGAPNGSGKTACAELALLR-----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGL 1216 (1674)
T ss_pred CCceEEEEeeeec---ccceEEEecCCCCchhHHHHHHhcC-----CccceEEEEecchHHHHHHHHHHHHHhhccccCc
Confidence 6888887655443 5689999999999999999988875 234568999999999998666544 556666788
Q ss_pred eEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhh
Q 010111 131 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210 (518)
Q Consensus 131 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~ 210 (518)
.++.+.|..+..... ....+|+|+||+++ ++++ ..+.+++.|.||+|.+.
T Consensus 1217 ~~~~l~ge~s~~lkl------------------------~~~~~vii~tpe~~-d~lq-----~iQ~v~l~i~d~lh~ig 1266 (1674)
T KOG0951|consen 1217 RIVKLTGETSLDLKL------------------------LQKGQVIISTPEQW-DLLQ-----SIQQVDLFIVDELHLIG 1266 (1674)
T ss_pred eEEecCCccccchHH------------------------hhhcceEEechhHH-HHHh-----hhhhcceEeeehhhhhc
Confidence 999999988766542 34569999999996 4443 46678999999999775
Q ss_pred hHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCC
Q 010111 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 290 (518)
Q Consensus 211 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~ 290 (518)
..++...+-|++ +. .+-.+....++.+.+|..+++.-+. .+...
T Consensus 1267 -g~~g~v~evi~S-~r-------------------------------~ia~q~~k~ir~v~ls~~lana~d~---ig~s~ 1310 (1674)
T KOG0951|consen 1267 -GVYGAVYEVICS-MR-------------------------------YIASQLEKKIRVVALSSSLANARDL---IGASS 1310 (1674)
T ss_pred -ccCCceEEEEee-HH-------------------------------HHHHHHHhheeEEEeehhhccchhh---ccccc
Confidence 222222222221 00 0000111234667777666543332 33334
Q ss_pred CeEEeeCCccccCccccceeeeecCCC-CcH----HHHHHHHH--hcCCCcEEEEcCChhhHHHHHHHHhhcCC------
Q 010111 291 PLFLTTGETRYKLPERLESYKLICESK-LKP----LYLVALLQ--SLGEEKCIVFTSSVESTHRLCTLLNHFGE------ 357 (518)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~----~~l~~~l~--~~~~~~~lVf~~s~~~~~~l~~~L~~~~~------ 357 (518)
..++....+....|-.++...+..... ... ...+..+. ...+++++||+++++.|..++.-|-.+..
T Consensus 1311 ~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~ 1390 (1674)
T KOG0951|consen 1311 SGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDY 1390 (1674)
T ss_pred cceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHH
Confidence 444555555444444443322222111 111 11122222 23567999999999999888765533210
Q ss_pred -------------CceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEE-----cC------CC
Q 010111 358 -------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN-----YD------KP 413 (518)
Q Consensus 358 -------------~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~-----~~------~p 413 (518)
...+..+-|-+++..+...+-..|..|.+.|+|...- ..|+-.. .+.||. || .+
T Consensus 1391 l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~-~~lVvvmgt~~ydg~e~~~~~ 1468 (1674)
T KOG0951|consen 1391 LLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLK-AHLVVVMGTQYYDGKEHSYED 1468 (1674)
T ss_pred HHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-ccccccc-ceEEEEecceeeccccccccc
Confidence 0122233388999999999999999999999888776 7777665 344443 22 12
Q ss_pred CCccchhhhhhhcccCCCCCcEEEEeecchhHHHH
Q 010111 414 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVK 448 (518)
Q Consensus 414 ~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~ 448 (518)
-+.....|++|++.| .|.|++++...+..+++
T Consensus 1469 y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yyk 1500 (1674)
T KOG0951|consen 1469 YPIAELLQMVGLASG---AGKCVIMCHTPKKEYYK 1500 (1674)
T ss_pred CchhHHHHHhhhhcC---CccEEEEecCchHHHHH
Confidence 346788999999988 56999999888874443
No 147
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.68 E-value=1.9e-15 Score=160.53 Aligned_cols=79 Identities=14% Similarity=0.179 Sum_probs=68.9
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
+.|..++|.|.+.+..+...+..++++++.||||+|||++.+.|++......+ ...+++|++.|..-..|..+++++..
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-~~~kIiy~sRThsQl~q~i~Elk~~~ 84 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-EVRKIIYASRTHSQLEQATEELRKLM 84 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-ccccEEEEcccchHHHHHHHHHHhhh
Confidence 56877899999999998888888999999999999999999999998766432 33589999999999999999999853
No 148
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.66 E-value=4e-16 Score=138.66 Aligned_cols=147 Identities=22% Similarity=0.212 Sum_probs=91.6
Q ss_pred ccchhhHHHHHHhhCCCCC---CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcc
Q 010111 50 SLFPVQVAVWQETIGPGLF---ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~---~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 126 (518)
+|+++|.+|+..+...+.. ++++++.+|||||||.+++..+.+... ++++++|+..|+.|+.+.+..+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-------~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-------KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-------EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-------ceeEecCHHHHHHHHHHHHHHhhh
Confidence 6899999999988754433 489999999999999997765554332 799999999999999999977654
Q ss_pred ccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCC----------CCCCC
Q 010111 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR----------GFTLE 196 (518)
Q Consensus 127 ~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~----------~~~~~ 196 (518)
................. ....................+++++|.+.+........ .....
T Consensus 76 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 145 (184)
T PF04851_consen 76 EKYNFFEKSIKPAYDSK----------EFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKN 145 (184)
T ss_dssp TSEEEEE--GGGCCE-S----------EEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGG
T ss_pred hhhhhcccccccccccc----------cccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccc
Confidence 32111000000000000 00000000011112234567999999999987765321 12345
Q ss_pred cccEEEEechhHhhhHh
Q 010111 197 HLCYLVVDETDRLLREA 213 (518)
Q Consensus 197 ~~~~vViDEah~~~~~~ 213 (518)
.+++||+||||++....
T Consensus 146 ~~~~vI~DEaH~~~~~~ 162 (184)
T PF04851_consen 146 KFDLVIIDEAHHYPSDS 162 (184)
T ss_dssp SESEEEEETGGCTHHHH
T ss_pred cCCEEEEehhhhcCCHH
Confidence 67899999999987766
No 149
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.66 E-value=5.7e-15 Score=125.08 Aligned_cols=122 Identities=39% Similarity=0.647 Sum_probs=93.7
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhh
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 149 (518)
+++++.+|||+|||.+++..+.+..... ...+++|++|++.++.|+.+.+...... +..+..+.+........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~--~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL--KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE---- 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc--cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH----
Confidence 4689999999999999888888776552 3458999999999999999999888765 67777777765544332
Q ss_pred cCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHh
Q 010111 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216 (518)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~ 216 (518)
.....+.+|+++|++.+...+.... .....++++|+||+|.+....+..
T Consensus 74 -----------------~~~~~~~~i~i~t~~~~~~~~~~~~-~~~~~~~~iiiDE~h~~~~~~~~~ 122 (144)
T cd00046 74 -----------------KLLSGKTDIVVGTPGRLLDELERLK-LSLKKLDLLILDEAHRLLNQGFGL 122 (144)
T ss_pred -----------------HHhcCCCCEEEECcHHHHHHHHcCC-cchhcCCEEEEeCHHHHhhcchHH
Confidence 1234568999999999988777632 345678899999999987665443
No 150
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.62 E-value=3.9e-14 Score=139.20 Aligned_cols=126 Identities=20% Similarity=0.265 Sum_probs=107.5
Q ss_pred CCCcHHHHHHHHHhc--CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceE-EEEc
Q 010111 316 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV-LVSS 392 (518)
Q Consensus 316 ~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~v-LvaT 392 (518)
+..|+..|..++.+. .++++|+|+.-.++.+.+.++|...+ +....+.|+....+|..+++.|+..++-| |++|
T Consensus 1026 dSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~---Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLST 1102 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRG---YTYLRLDGSSKASDRRDVVRDWQASDIFVFLLST 1102 (1185)
T ss_pred cccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhc---cceEEecCcchhhHHHHHHhhccCCceEEEEEec
Confidence 455666677776644 47899999999999999999998766 89999999999999999999999877665 8999
Q ss_pred CccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCc--EEEEeecchh
Q 010111 393 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR--CFTLLHKDEV 444 (518)
Q Consensus 393 ~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~e~ 444 (518)
.+.+-|||+...+.||+||..|++..-.|...|+.|.|+... ++-++..+-+
T Consensus 1103 RAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTv 1156 (1185)
T KOG0388|consen 1103 RAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTV 1156 (1185)
T ss_pred ccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccH
Confidence 999999999999999999999999999999999999997654 5555554433
No 151
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.62 E-value=3.1e-14 Score=148.75 Aligned_cols=338 Identities=18% Similarity=0.151 Sum_probs=193.9
Q ss_pred cchhhHHHHHHhhCCC----CCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcc
Q 010111 51 LFPVQVAVWQETIGPG----LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (518)
Q Consensus 51 ~~~~Q~~a~~~~~~~~----~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 126 (518)
-+.||-+|+..+...- ..|-=++-.|-||||||++ -.-++..|... ..+.|..|..-.|.|--|.-+.+++-..
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~a-NARImyaLsd~-~~g~RfsiALGLRTLTLQTGda~r~rL~ 486 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLA-NARAMYALRDD-KQGARFAIALGLRSLTLQTGHALKTRLN 486 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHH-HHHHHHHhCCC-CCCceEEEEccccceeccchHHHHHhcC
Confidence 4579999987665321 1122234589999999997 33345455543 4677899999999999999999999877
Q ss_pred ccCceEEEeecCCchHHHHHHhhcCCcc--ccCc----------------c----CCchhHHHhhcC--------CCcEE
Q 010111 127 AVGLSVGLAVGQSSIADEISELIKRPKL--EAGI----------------C----YDPEDVLQELQS--------AVDIL 176 (518)
Q Consensus 127 ~~~~~v~~~~g~~~~~~~~~~~~~~~~~--~~~~----------------~----~~~~~~~~~~~~--------~~~Ii 176 (518)
..+....+++|+....+........... +.+. . .....+..++.. ...|+
T Consensus 487 L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~ 566 (1110)
T TIGR02562 487 LSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVL 566 (1110)
T ss_pred CCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeE
Confidence 6677889999998876655422221110 0000 0 001111222222 25799
Q ss_pred EeCChHHHHhHhcC--CCCCCC----cccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhh
Q 010111 177 VATPGRLMDHINAT--RGFTLE----HLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 250 (518)
Q Consensus 177 v~Tp~~l~~~l~~~--~~~~~~----~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (518)
|||++.++-..... +...+. .-+.|||||+|.+ +......+..++......
T Consensus 567 V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaY-D~~~~~~L~rlL~w~~~l---------------------- 623 (1110)
T TIGR02562 567 VCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDY-EPEDLPALLRLVQLAGLL---------------------- 623 (1110)
T ss_pred EecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccC-CHHHHHHHHHHHHHHHHc----------------------
Confidence 99999998776321 122111 1247999999965 444444455555533221
Q ss_pred hccccccCCCCCCCCceeeEEEeEeecCChhhhhh-----------ccCC---CCeEEeeCC-ccccC------------
Q 010111 251 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-----------LDLH---HPLFLTTGE-TRYKL------------ 303 (518)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~-----------~~~~---~~~~~~~~~-~~~~~------------ 303 (518)
..+.+++|||+|+....... .... .+..+...- .++..
T Consensus 624 ---------------G~~VlLmSATLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~ 688 (1110)
T TIGR02562 624 ---------------GSRVLLSSATLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFI 688 (1110)
T ss_pred ---------------CCCEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHH
Confidence 12679999999877433211 0111 111111100 00000
Q ss_pred ----------------cccccee-eeecCCC-C----cHHHHHHHHH--------hc------CCCc---EEEEcCChhh
Q 010111 304 ----------------PERLESY-KLICESK-L----KPLYLVALLQ--------SL------GEEK---CIVFTSSVES 344 (518)
Q Consensus 304 ----------------~~~~~~~-~~~~~~~-~----k~~~l~~~l~--------~~------~~~~---~lVf~~s~~~ 344 (518)
......- .+.++.. . ....+...+. .+ .+++ .+|-+++++.
T Consensus 689 ~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p 768 (1110)
T TIGR02562 689 QRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDP 768 (1110)
T ss_pred HHHHHHHHHHHHHHhcCcccceEEEeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchH
Confidence 0000000 1111111 1 1112222211 11 1122 3566677777
Q ss_pred HHHHHHHHhhcCC---CceeEEEccccCChHHHHHHHHHH----------------------hc----CCceEEEEcCcc
Q 010111 345 THRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAF----------------------RE----GKIQVLVSSDAM 395 (518)
Q Consensus 345 ~~~l~~~L~~~~~---~~~~v~~~hg~~~~~~r~~~~~~f----------------------~~----g~~~vLvaT~~~ 395 (518)
+-.+++.|-.... ..+.+.+||+..+...|..+++.+ ++ +...|+|+|+++
T Consensus 769 ~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~ 848 (1110)
T TIGR02562 769 LIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVE 848 (1110)
T ss_pred HHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeE
Confidence 7777777754321 235678899999888888777664 11 456899999999
Q ss_pred ccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCC
Q 010111 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 431 (518)
Q Consensus 396 ~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~ 431 (518)
+.|+|+. .+++| .-|.+.+..+|++||+.|.|.
T Consensus 849 E~g~D~d-fd~~~--~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 849 EVGRDHD-YDWAI--ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred EEEeccc-CCeee--eccCcHHHHHHHhhccccccc
Confidence 9999985 55444 346668899999999999874
No 152
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.60 E-value=2e-15 Score=114.70 Aligned_cols=81 Identities=43% Similarity=0.709 Sum_probs=75.3
Q ss_pred HHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhc
Q 010111 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426 (518)
Q Consensus 347 ~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~ 426 (518)
.+++.|+..+ +.+..+||+++..+|..+++.|+++...|||+|+++++|+|+|.++.||.+++|.+...|.|++||+
T Consensus 2 ~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELG---IKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCC---CeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4566676654 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 010111 427 ARAG 430 (518)
Q Consensus 427 gR~g 430 (518)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9975
No 153
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.59 E-value=1.3e-14 Score=148.01 Aligned_cols=357 Identities=18% Similarity=0.194 Sum_probs=208.7
Q ss_pred CccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcccc
Q 010111 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (518)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 128 (518)
.++.+||..-++..+.....+-|.++...+|.|||.. .+.++..+...+.....-||+||+-.|.+ |..+|..+++.
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWaPS- 469 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWAPS- 469 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHcccCCCeEEeccccccCC-chhhccccccc-
Confidence 4899999999998887776778899999999999986 45566666665444445899999998887 77788877653
Q ss_pred CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhH
Q 010111 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (518)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (518)
+....+.|.......... +......+|+++|++.+...-. .+.--++.++||||.|+
T Consensus 470 -v~~i~YkGtp~~R~~l~~-------------------qir~gKFnVLlTtyEyiikdk~---lLsKI~W~yMIIDEGHR 526 (1157)
T KOG0386|consen 470 -VQKIQYKGTPQQRSGLTK-------------------QQRHGKFNVLLTTYEYIIKDKA---LLSKISWKYMIIDEGHR 526 (1157)
T ss_pred -eeeeeeeCCHHHHhhHHH-------------------HHhcccceeeeeeHHHhcCCHH---HHhccCCcceeeccccc
Confidence 444555554332222111 1222568999999887754110 01122366899999999
Q ss_pred hhhHh----------HH-------------hHHHHHHHhcccccccccCCcccccccccccchhhhccc-----------
Q 010111 209 LLREA----------YQ-------------AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG----------- 254 (518)
Q Consensus 209 ~~~~~----------~~-------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 254 (518)
|-+.. |. ..++.++.++.-.-...|.+..+|- .|+.. .+..+|
T Consensus 527 mKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~Fe-qWFN~--PFantGek~eLteEEtl 603 (1157)
T KOG0386|consen 527 MKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFE-QWFNQ--PFANTGEKVELTEEETL 603 (1157)
T ss_pred ccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHH-HHhhh--hhhhcCCcccccchHHH
Confidence 84321 11 1112222222211111121111110 00000 000000
Q ss_pred --------c-----ccCCCCCC---C----CceeeEEEeEeecCCh--------------------------hhhhhccC
Q 010111 255 --------V-----ERGFKDKP---Y----PRLVKMVLSATLTQDP--------------------------NKLAQLDL 288 (518)
Q Consensus 255 --------~-----~~~~~~~~---~----~~~~~i~~SaT~~~~~--------------------------~~~~~~~~ 288 (518)
+ .+..+... . ..+-.+-+||--..-. .......+
T Consensus 604 LIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiC 683 (1157)
T KOG0386|consen 604 LIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLC 683 (1157)
T ss_pred HHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhc
Confidence 0 00000000 0 0000111222100000 00000111
Q ss_pred CCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhc--CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEcc
Q 010111 289 HHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 366 (518)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h 366 (518)
++|..+.-....+...... ....-...|+..|..++-+. .+++++.||.-......+..+|.-.. ++...+.
T Consensus 684 NHP~lf~~ve~~~~~~~~~---~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~---~kYlRLD 757 (1157)
T KOG0386|consen 684 NHPYLFANVENSYTLHYDI---KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIRE---YKYLRLD 757 (1157)
T ss_pred CCchhhhhhccccccccCh---hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhh---hheeeec
Confidence 2222110000000000000 01112346666666666544 47899999998888888899988655 8899999
Q ss_pred ccCChHHHHHHHHHHhcCCc---eEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEee
Q 010111 367 GLQRQSVRSKTLKAFREGKI---QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440 (518)
Q Consensus 367 g~~~~~~r~~~~~~f~~g~~---~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 440 (518)
|.....+|-..++.|..-+. ..|++|...+.|+|+..++.||+||..+++....|+--|+.|.|+...|-++..
T Consensus 758 G~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl 834 (1157)
T KOG0386|consen 758 GQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRL 834 (1157)
T ss_pred CCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeee
Confidence 99999999999999996543 348999999999999999999999999999999999999999998766555543
No 154
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.54 E-value=8.8e-12 Score=121.12 Aligned_cols=261 Identities=17% Similarity=0.192 Sum_probs=176.6
Q ss_pred CCcEEEeCChHHHHhHhcC----CC-CCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCc-ccccccccc
Q 010111 172 AVDILVATPGRLMDHINAT----RG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA-STFLPSAFG 245 (518)
Q Consensus 172 ~~~Iiv~Tp~~l~~~l~~~----~~-~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~ 245 (518)
++|||||+|=-|...+... .. -.++++.++|+|.||.++-++| +++..+++.+...+....... .-..+.+..
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW-~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ld 209 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNW-EHVLHVFEHLNLQPKKSHDTDFSRVRPWYLD 209 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhH-HHHHHHHHHhccCCCCCCCCCHHHHHHHHHc
Confidence 5799999999988777641 12 2478999999999998876665 567777777765554332211 111222222
Q ss_pred cchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCe---EEeeCCc----cccCccccceeeee--cC-
Q 010111 246 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL---FLTTGET----RYKLPERLESYKLI--CE- 315 (518)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~~--~~- 315 (518)
. ....-.|++++|+..+++...+....+.+.. .+..... ...+...+.+.... ++
T Consensus 210 g---------------~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 210 G---------------QAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred C---------------cchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 2 2223349999999998888777766443321 1111111 11222334444332 22
Q ss_pred ----CCCcHHHH----HHHHH-hcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCc
Q 010111 316 ----SKLKPLYL----VALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386 (518)
Q Consensus 316 ----~~~k~~~l----~~~l~-~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~ 386 (518)
.+.+.... +.-+. ....+++|||++|--+--.+.++|.... +....+|-..+..+-..+-..|..|+.
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~---~sF~~i~EYts~~~isRAR~~F~~G~~ 351 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKEN---ISFVQISEYTSNSDISRARSQFFHGRK 351 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcC---CeEEEecccCCHHHHHHHHHHHHcCCc
Confidence 12222222 22223 4456799999999999999999998654 788889999999999999999999999
Q ss_pred eEEEEcCcc--ccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCC------CCCcEEEEeecchhHHHHHHH
Q 010111 387 QVLVSSDAM--TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG------QLGRCFTLLHKDEVCLVKRFK 451 (518)
Q Consensus 387 ~vLvaT~~~--~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g------~~g~~~~~~~~~e~~~~~~~~ 451 (518)
++|+.|.-+ -+-..+.++..||.|.+|..+.-|-..+.-.+... ....|.++++.-|.-.++++.
T Consensus 352 ~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 352 PILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred eEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 999999864 46678899999999999999988877775544433 257899999999986666554
No 155
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.51 E-value=1.3e-12 Score=134.66 Aligned_cols=109 Identities=19% Similarity=0.291 Sum_probs=93.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCC--ceEEEEcCccccCCCCCCCCEEEE
Q 010111 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK--IQVLVSSDAMTRGMDVEGVNNVVN 409 (518)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~--~~vLvaT~~~~~GiDip~v~~VI~ 409 (518)
++++|||+.-.++.+.+..+|+..| +....+.|....++|+..+++|..+. ...|++|-..+.|||+.+.+.||+
T Consensus 1276 ghRvLIfTQMtkmLDVLeqFLnyHg---ylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvF 1352 (1958)
T KOG0391|consen 1276 GHRVLIFTQMTKMLDVLEQFLNYHG---YLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVF 1352 (1958)
T ss_pred CceEEehhHHHHHHHHHHHHHhhcc---eEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEE
Confidence 3799999999999999999998766 88889999999999999999999764 244899999999999999999999
Q ss_pred cCCCCCccchhhhhhhcccCCCCCc--EEEEeecch
Q 010111 410 YDKPAYIKTYIHRAGRTARAGQLGR--CFTLLHKDE 443 (518)
Q Consensus 410 ~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~e 443 (518)
||..|++..-.|.--|+.|.|+.-. .|-|++..-
T Consensus 1353 YDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1353 YDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERT 1388 (1958)
T ss_pred ecCCCCchhhhHHHHHHHhhcCccceEEEEeeccch
Confidence 9999999888888888888886554 555666543
No 156
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.47 E-value=9.1e-12 Score=118.18 Aligned_cols=120 Identities=20% Similarity=0.199 Sum_probs=99.6
Q ss_pred CcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcC-CceE-EEEcCccccCCCCCCCCEEEEc
Q 010111 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQV-LVSSDAMTRGMDVEGVNNVVNY 410 (518)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g-~~~v-LvaT~~~~~GiDip~v~~VI~~ 410 (518)
-+.|||.......+.+.=.|.+.| +.+.-+.|+|++..|...++.|++. +++| |++-.+.+..+|+...++|+.+
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaG---fscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmm 715 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAG---FSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMM 715 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccC---ceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEee
Confidence 478999888888888777777655 8999999999999999999999975 6776 6677888889999999999999
Q ss_pred CCCCCccchhhhhhhcccCCC--CCcEEEEeecchhHHHHHHHHHHHhh
Q 010111 411 DKPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEVCLVKRFKKLLQKA 457 (518)
Q Consensus 411 ~~p~s~~~~~Qr~GR~gR~g~--~g~~~~~~~~~e~~~~~~~~~~l~~~ 457 (518)
|+.|++..-.|...|..|.|+ +-.++.|+-+..++ +++.++.+++
T Consensus 716 DPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE--~kIieLQeKK 762 (791)
T KOG1002|consen 716 DPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIE--EKIIELQEKK 762 (791)
T ss_pred cccccHHHHhhhhhhHHhhcCccceeEEEeehhccHH--HHHHHHHHHH
Confidence 999999999999999999885 55788888776653 5566665543
No 157
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.46 E-value=5.9e-12 Score=130.52 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=79.1
Q ss_pred EEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCC
Q 010111 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152 (518)
Q Consensus 73 li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~ 152 (518)
+..+.+|||||.+|+-.+-+.+..+ ..+||++|...|..|+.+.|+..+. +..+..++++.+..++...+
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~G----k~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w---- 233 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAG----RGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRW---- 233 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcC----CeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHH----
Confidence 3444469999999988777666653 3799999999999999999987753 25688899998887776554
Q ss_pred ccccCccCCchhHHHhhc-CCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhH
Q 010111 153 KLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (518)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (518)
..+. ..+.|+|+|-.-+ ...+.++.+||+||-|.
T Consensus 234 --------------~~~~~G~~~IViGtRSAv--------FaP~~~LgLIIvdEEhd 268 (665)
T PRK14873 234 --------------LAVLRGQARVVVGTRSAV--------FAPVEDLGLVAIWDDGD 268 (665)
T ss_pred --------------HHHhCCCCcEEEEcceeE--------EeccCCCCEEEEEcCCc
Confidence 3333 4489999994332 23578899999999993
No 158
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.44 E-value=1.8e-11 Score=120.94 Aligned_cols=104 Identities=19% Similarity=0.207 Sum_probs=86.2
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHh--cCCceE-EEEcCccccCCCCCCCCEE
Q 010111 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR--EGKIQV-LVSSDAMTRGMDVEGVNNV 407 (518)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~--~g~~~v-LvaT~~~~~GiDip~v~~V 407 (518)
...+++|...=......+...|+..+ .....+||....++|+.+++.|. +|..+| |++-...+.|+|+-+.+++
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g---~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHl 821 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGG---HIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHL 821 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCC---eeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceE
Confidence 45677776655566666677777655 88889999999999999999998 454566 5666788999999999999
Q ss_pred EEcCCCCCccchhhhhhhcccCCCCCcEEE
Q 010111 408 VNYDKPAYIKTYIHRAGRTARAGQLGRCFT 437 (518)
Q Consensus 408 I~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~ 437 (518)
|..|+-|++.--.|.+-|.-|.|+...+++
T Consensus 822 ilvDlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 822 ILVDLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred EEEecccCHHHHHHHHHHHHHhcccCceEE
Confidence 999999999999999999999998876654
No 159
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.44 E-value=7.8e-13 Score=124.67 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=65.2
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhccc--CCccEEEEcCcHHHHHHHHHHHHH
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVKDVFAA 123 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~--~~~~~lil~Pt~~La~Q~~~~~~~ 123 (518)
+.| +|+|.|.+.+..+...+..|+++++.||||+|||+++++|++..+...+. .+.+++|+++|..+..|....+++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 456 46999999888877777789999999999999999999999987765432 234899999999999998887876
Q ss_pred hc
Q 010111 124 IA 125 (518)
Q Consensus 124 ~~ 125 (518)
..
T Consensus 84 ~~ 85 (289)
T smart00489 84 LM 85 (289)
T ss_pred cc
Confidence 53
No 160
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.44 E-value=7.8e-13 Score=124.67 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=65.2
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhccc--CCccEEEEcCcHHHHHHHHHHHHH
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVKDVFAA 123 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~--~~~~~lil~Pt~~La~Q~~~~~~~ 123 (518)
+.| +|+|.|.+.+..+...+..|+++++.||||+|||+++++|++..+...+. .+.+++|+++|..+..|....+++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 456 46999999888877777789999999999999999999999987765432 234899999999999998887876
Q ss_pred hc
Q 010111 124 IA 125 (518)
Q Consensus 124 ~~ 125 (518)
..
T Consensus 84 ~~ 85 (289)
T smart00488 84 LM 85 (289)
T ss_pred cc
Confidence 53
No 161
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.42 E-value=2e-12 Score=132.85 Aligned_cols=357 Identities=20% Similarity=0.205 Sum_probs=206.5
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
+|. .++.+|. +..+..+..-+..+.||-|||+++.+|+.-+...+ ..+.+++..--||..-.+++..+.
T Consensus 77 lg~-~~~dVQl------iG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~g----kgVhvVTvNdYLA~RDae~m~~l~ 145 (822)
T COG0653 77 LGM-RHFDVQL------LGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAG----KGVHVVTVNDYLARRDAEWMGPLY 145 (822)
T ss_pred cCC-ChhhHHH------hhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCC----CCcEEeeehHHhhhhCHHHHHHHH
Confidence 454 6667774 44444567789999999999999999988554433 368999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHhHhcC-----CCCCCCccc
Q 010111 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHLC 199 (518)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~-----~~~~~~~~~ 199 (518)
.++|+++++...+.+...+.. ...|||..+|-..| .+.+... .......+.
T Consensus 146 ~~LGlsvG~~~~~m~~~ek~~-----------------------aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~ 202 (822)
T COG0653 146 EFLGLSVGVILAGMSPEEKRA-----------------------AYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLN 202 (822)
T ss_pred HHcCCceeeccCCCChHHHHH-----------------------HHhcCceeccccccCcchhhhhhhccHHHhhhccCC
Confidence 999999999999987666533 34679999998665 2222221 112245688
Q ss_pred EEEEechhHhhhH----------------hHHhHHHHHHHhccccccc---------ccCCcc----------ccccc--
Q 010111 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDNEN---------RFSDAS----------TFLPS-- 242 (518)
Q Consensus 200 ~vViDEah~~~~~----------------~~~~~~~~i~~~~~~~~~~---------~~~~~~----------~~~~~-- 242 (518)
+.|+||+|.++=. ..+..+..+...+.....- .+...+ ..+..
T Consensus 203 faIvDEvDSILIDEARtPLiISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~e 282 (822)
T COG0653 203 FAIVDEVDSILIDEARTPLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLE 282 (822)
T ss_pred eEEEcchhheeeeccccceeeecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchh
Confidence 9999999965310 1122222222211111000 000000 00000
Q ss_pred -------ccccchhh-----------h---------ccc---cccCCCCC------------CCCc--------------
Q 010111 243 -------AFGSLKTI-----------R---------RCG---VERGFKDK------------PYPR-------------- 266 (518)
Q Consensus 243 -------~~~~~~~~-----------~---------~~~---~~~~~~~~------------~~~~-------------- 266 (518)
....+... + .++ ..+.+.+. ..+.
T Consensus 283 n~~~~h~~~~alrA~~l~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR 362 (822)
T COG0653 283 NVNLVHHLNQALRAHILFFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFR 362 (822)
T ss_pred hHHHHhhHHHHHHHHHHhhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHh
Confidence 00000000 0 000 00011000 0000
Q ss_pred --eeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHH--hcCCCcEEEEcCCh
Q 010111 267 --LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ--SLGEEKCIVFTSSV 342 (518)
Q Consensus 267 --~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~--~~~~~~~lVf~~s~ 342 (518)
-....|+.|......++...+....+.+.+.... .... ..-.+......|...+...++ ...+.|+||-+.++
T Consensus 363 ~y~kl~gmTGTa~te~~EF~~iY~l~vv~iPTnrp~--~R~D-~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~si 439 (822)
T COG0653 363 LYPKLAGMTGTADTEEEEFDVIYGLDVVVIPTNRPI--IRLD-EPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSI 439 (822)
T ss_pred hhhhhcCCCCcchhhhhhhhhccCCceeeccCCCcc--cCCC-CccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcce
Confidence 0123445554444444444443333333322211 1001 111122334556666655554 33578999999999
Q ss_pred hhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCC-----------EEEEcC
Q 010111 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN-----------NVVNYD 411 (518)
Q Consensus 343 ~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~-----------~VI~~~ 411 (518)
+..+.+.+.|.+.+ ++..++.......+-+.+-+.-+.| -|-|||++++||-||.--. +||-..
T Consensus 440 e~SE~ls~~L~~~~---i~h~VLNAk~h~~EA~Iia~AG~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTE 514 (822)
T COG0653 440 EKSELLSKLLRKAG---IPHNVLNAKNHAREAEIIAQAGQPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTE 514 (822)
T ss_pred ecchhHHHHHHhcC---CCceeeccccHHHHHHHHhhcCCCC--ccccccccccCCcccccCCCHHHHHHhCCcEEEecc
Confidence 99999999999876 6666776666654444444333333 6789999999999986222 355444
Q ss_pred CCCCccchhhhhhhcccCCCCCcEEEEeecchh
Q 010111 412 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (518)
Q Consensus 412 ~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~ 444 (518)
.-.|..---|..||+||.|.+|.+-.|++-+|-
T Consensus 515 RhESRRIDnQLRGRsGRQGDpG~S~F~lSleD~ 547 (822)
T COG0653 515 RHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDD 547 (822)
T ss_pred cchhhHHHHHhhcccccCCCcchhhhhhhhHHH
Confidence 444554455999999999999999988876553
No 162
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.36 E-value=1.4e-11 Score=136.58 Aligned_cols=123 Identities=21% Similarity=0.253 Sum_probs=103.7
Q ss_pred CcHHHHHHHH-H--hcCCC--cEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcC--CceEEE
Q 010111 318 LKPLYLVALL-Q--SLGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG--KIQVLV 390 (518)
Q Consensus 318 ~k~~~l~~~l-~--~~~~~--~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g--~~~vLv 390 (518)
.|...+..++ . ...+. ++++|++.......+...+...+ +....++|+++...|...++.|.++ ..-+++
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~---~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~ll 768 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALG---IKYVRLDGSTPAKRRQELIDRFNADEEEKVFLL 768 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcC---CcEEEEeCCCChhhHHHHHHHhhcCCCCceEEE
Confidence 5666776666 2 22345 89999999999999999998866 7899999999999999999999986 345578
Q ss_pred EcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCc--EEEEeecch
Q 010111 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR--CFTLLHKDE 443 (518)
Q Consensus 391 aT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~e 443 (518)
++.+++.|+|+...++||++|+.+++....|...|+.|.|+... ++-++..+.
T Consensus 769 s~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 769 SLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred EecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 88899999999999999999999999999999999999998765 444555444
No 163
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.27 E-value=3.8e-11 Score=97.15 Aligned_cols=105 Identities=19% Similarity=0.158 Sum_probs=66.3
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHH
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 147 (518)
.|+-.++-..+|+|||.-.+.-++....+ ++.++|||.|||.++..+.+.++.. ++++..-.-..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~---~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~~~-------- 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK---RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNARMR-------- 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH---TT--EEEEESSHHHHHHHHHHTTTS----SEEEESTTSS---------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH---ccCeEEEecccHHHHHHHHHHHhcC----CcccCceeeec--------
Confidence 35566889999999998655544443333 3558999999999999888877643 33322111110
Q ss_pred hhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHh
Q 010111 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (518)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~ 209 (518)
....+.-|-++|+..+...+.+ .....++++||+||||..
T Consensus 68 --------------------~~~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II~DEcH~~ 107 (148)
T PF07652_consen 68 --------------------THFGSSIIDVMCHATYGHFLLN--PCRLKNYDVIIMDECHFT 107 (148)
T ss_dssp -----------------------SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEEECTTT--
T ss_pred --------------------cccCCCcccccccHHHHHHhcC--cccccCccEEEEeccccC
Confidence 0123457889999998887766 234678999999999954
No 164
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.26 E-value=5.3e-10 Score=114.64 Aligned_cols=293 Identities=17% Similarity=0.197 Sum_probs=164.6
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhh
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 149 (518)
.-.+|.||.|||||.+..-++-+.+. .+..++|+++-++.|+.++.+.++...-. ++. .+.+.....
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~---~~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv---~Y~d~~~~~------ 116 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALK---NPDKSVLVVSHRRSLTKSLAERFKKAGLS-GFV---NYLDSDDYI------ 116 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhcc---CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-cce---eeecccccc------
Confidence 34578999999999875444433322 24568999999999999999988764211 111 111111000
Q ss_pred cCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHH---HHHhcc
Q 010111 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT---VLQLTR 226 (518)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~---i~~~~~ 226 (518)
.-....+-+++..+.|..... ..+.++++||+||+-..+..-+.+.+.+ ++..+.
T Consensus 117 ------------------i~~~~~~rLivqIdSL~R~~~----~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~ 174 (824)
T PF02399_consen 117 ------------------IDGRPYDRLIVQIDSLHRLDG----SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLK 174 (824)
T ss_pred ------------------ccccccCeEEEEehhhhhccc----ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHH
Confidence 001134777888777755432 2466799999999998877755433322 222111
Q ss_pred cccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCC-CCeEEeeCC-cc--c-
Q 010111 227 SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGE-TR--Y- 301 (518)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~-~~~~~~~~~-~~--~- 301 (518)
..- + ..-..|++-|++....-++....-. .++.+.... .. +
T Consensus 175 ~lI---------------------~-------------~ak~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs 220 (824)
T PF02399_consen 175 ELI---------------------R-------------NAKTVIVMDADLNDQTVDFLASCRPDENIHVIVNTYASPGFS 220 (824)
T ss_pred HHH---------------------H-------------hCCeEEEecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcc
Confidence 100 0 0014566667666554444433211 111111100 00 0
Q ss_pred -----------------------------cC----ccccceeeeecCCCCcHHHHHHHHHhc-CCCcEEEEcCChhhHHH
Q 010111 302 -----------------------------KL----PERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHR 347 (518)
Q Consensus 302 -----------------------------~~----~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~lVf~~s~~~~~~ 347 (518)
.. +....... . ..........++... .++++-||++|...++.
T Consensus 221 ~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~ 297 (824)
T PF02399_consen 221 NRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAA-I--SNDETTFFSELLARLNAGKNICVFSSTVSFAEI 297 (824)
T ss_pred cceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccc-c--ccchhhHHHHHHHHHhCCCcEEEEeChHHHHHH
Confidence 00 00000000 0 011122333333333 35677789999999999
Q ss_pred HHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCC--CEEEEcCCCC----Cccchhh
Q 010111 348 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV--NNVVNYDKPA----YIKTYIH 421 (518)
Q Consensus 348 l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v--~~VI~~~~p~----s~~~~~Q 421 (518)
+++..+... .++..++|.-+..+ + +. =++.+|++-|+++..|+++... +-|.-|=-|. +..+..|
T Consensus 298 v~~~~~~~~---~~Vl~l~s~~~~~d---v-~~--W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q 368 (824)
T PF02399_consen 298 VARFCARFT---KKVLVLNSTDKLED---V-ES--WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQ 368 (824)
T ss_pred HHHHHHhcC---CeEEEEcCCCCccc---c-cc--ccceeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHH
Confidence 999988764 78888888766652 2 22 2568999999999999999743 3344442232 2345799
Q ss_pred hhhhcccCCCCCcEEEEeecchh
Q 010111 422 RAGRTARAGQLGRCFTLLHKDEV 444 (518)
Q Consensus 422 r~GR~gR~g~~g~~~~~~~~~e~ 444 (518)
++||+-.. .....+++++....
T Consensus 369 ~lgRvR~l-~~~ei~v~~d~~~~ 390 (824)
T PF02399_consen 369 MLGRVRSL-LDNEIYVYIDASGA 390 (824)
T ss_pred HHHHHHhh-ccCeEEEEEecccc
Confidence 99997555 45667777765443
No 165
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.26 E-value=1.7e-09 Score=117.44 Aligned_cols=114 Identities=21% Similarity=0.200 Sum_probs=76.0
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHh
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 148 (518)
++..+|+--||||||++.+..+ ..+... ...++++|||-+++|-.|+.+.|..+........ ...+.....
T Consensus 273 ~~~G~IWHtqGSGKTlTm~~~A-~~l~~~-~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk--- 343 (962)
T COG0610 273 GKGGYIWHTQGSGKTLTMFKLA-RLLLEL-PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELK--- 343 (962)
T ss_pred CCceEEEeecCCchHHHHHHHH-HHHHhc-cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHH---
Confidence 4679999999999999855533 333333 4567999999999999999999999865432211 222222222
Q ss_pred hcCCccccCccCCchhHHHhhcCC-CcEEEeCChHHHHhHhcCCCCCCC-cccEEEEechhHh
Q 010111 149 IKRPKLEAGICYDPEDVLQELQSA-VDILVATPGRLMDHINATRGFTLE-HLCYLVVDETDRL 209 (518)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~-~~~~vViDEah~~ 209 (518)
+.+... -.|+|||-+.|-............ +=-+||+||||+-
T Consensus 344 ------------------~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS 388 (962)
T COG0610 344 ------------------ELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS 388 (962)
T ss_pred ------------------HHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc
Confidence 223323 489999999998777653111122 2237899999976
No 166
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=8.2e-10 Score=106.10 Aligned_cols=382 Identities=16% Similarity=0.209 Sum_probs=215.7
Q ss_pred CccchhhHHHHHHhhCCCCCCCCEEEECCC-CchH--HHHhHHHHHHHhhhc---------------------------c
Q 010111 49 SSLFPVQVAVWQETIGPGLFERDLCINSPT-GSGK--TLSYALPIVQTLSNR---------------------------A 98 (518)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apT-GsGK--T~~~~l~~~~~l~~~---------------------------~ 98 (518)
..+|+.|.+.+... .+.+|++.--.| +.|+ +-+|++-+++++.+. +
T Consensus 215 ~pltalQ~~L~~~m----~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG 290 (698)
T KOG2340|consen 215 EPLTALQKELFKIM----FNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQG 290 (698)
T ss_pred CcchHHHHHHHHHH----HhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcC
Confidence 36888888764332 346787653222 4455 567888888887441 1
Q ss_pred cCCccEEEEcCcHHHHHHHHHHHHHhccccCc-eE--------EEeecCCc--------hHHHHHHhh---cCCccccCc
Q 010111 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGL-SV--------GLAVGQSS--------IADEISELI---KRPKLEAGI 158 (518)
Q Consensus 99 ~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~-~v--------~~~~g~~~--------~~~~~~~~~---~~~~~~~~~ 158 (518)
...++|||+||+|+-|..+.+.+..++...+- +. .--+++.+ ..+....+. .+.....|.
T Consensus 291 ~tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl 370 (698)
T KOG2340|consen 291 FTRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGL 370 (698)
T ss_pred CCCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhH
Confidence 23578999999999999999988887443221 00 00111100 000000000 000111111
Q ss_pred cCCchhHHHh-hcCCCcEEEeCChHHHHhHhcCCC----C-CCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccc
Q 010111 159 CYDPEDVLQE-LQSAVDILVATPGRLMDHINATRG----F-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232 (518)
Q Consensus 159 ~~~~~~~~~~-~~~~~~Iiv~Tp~~l~~~l~~~~~----~-~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~ 232 (518)
.+....+... --...||+||+|=-|.-.+.+.+. + .++.+.++|||-||.++.++| +.+..|+..+...+...
T Consensus 371 ~ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~ 449 (698)
T KOG2340|consen 371 AFTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQ 449 (698)
T ss_pred HHHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccc
Confidence 1111111000 013579999999888777763221 2 368899999999999988776 45667777766544433
Q ss_pred cCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCC---eEEe-------eCCcccc
Q 010111 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP---LFLT-------TGETRYK 302 (518)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~---~~~~-------~~~~~~~ 302 (518)
........+.|+ +........|+++||+-.......+....+.+. +... ......+
T Consensus 450 h~~DfSRVR~wy--------------L~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~ 515 (698)
T KOG2340|consen 450 HDVDFSRVRMWY--------------LDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIP 515 (698)
T ss_pred cCCChhheehhe--------------eccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccch
Confidence 222222222221 111112223778888765544444333222211 1110 0001111
Q ss_pred Cccccceee---eecCCCCcHHHHHHH-HHhc---CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHH
Q 010111 303 LPERLESYK---LICESKLKPLYLVAL-LQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRS 375 (518)
Q Consensus 303 ~~~~~~~~~---~~~~~~~k~~~l~~~-l~~~---~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~ 375 (518)
+....+.+. +....+.++...... +-.. ....+||+.+|--.--++..++.+.. +....+|-..+...-.
T Consensus 516 l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~---i~F~~i~EYssk~~vs 592 (698)
T KOG2340|consen 516 LCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEE---ISFVMINEYSSKSKVS 592 (698)
T ss_pred hhhhhhheeccCcccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhh---cchHHHhhhhhHhhhh
Confidence 111112211 111223344333322 2222 23578999999998888999887654 5555566555666666
Q ss_pred HHHHHHhcCCceEEEEcCcc--ccCCCCCCCCEEEEcCCCCCccch---hhhhhhcccCCC----CCcEEEEeecchhHH
Q 010111 376 KTLKAFREGKIQVLVSSDAM--TRGMDVEGVNNVVNYDKPAYIKTY---IHRAGRTARAGQ----LGRCFTLLHKDEVCL 446 (518)
Q Consensus 376 ~~~~~f~~g~~~vLvaT~~~--~~GiDip~v~~VI~~~~p~s~~~~---~Qr~GR~gR~g~----~g~~~~~~~~~e~~~ 446 (518)
+.-+-|-.|...+|+-|.-+ -+-.++.+|..||+|.+|..+.-| +.+.+|+.-.|+ .-.|.+++++.|..-
T Consensus 593 RAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~ 672 (698)
T KOG2340|consen 593 RARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIR 672 (698)
T ss_pred HHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHH
Confidence 67777999999999999875 477899999999999999998654 677777764442 246888999988865
Q ss_pred HHHHHH
Q 010111 447 VKRFKK 452 (518)
Q Consensus 447 ~~~~~~ 452 (518)
++.+.-
T Consensus 673 Le~ivG 678 (698)
T KOG2340|consen 673 LENIVG 678 (698)
T ss_pred HHHhhh
Confidence 555443
No 167
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.15 E-value=2.3e-09 Score=109.41 Aligned_cols=122 Identities=20% Similarity=0.212 Sum_probs=98.9
Q ss_pred CCcHHHHHHHHHhc--CCCcEEEEcCChhhHHHHHHHHhhcCC-------------------CceeEEEccccCChHHHH
Q 010111 317 KLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGE-------------------LRIKIKEYSGLQRQSVRS 375 (518)
Q Consensus 317 ~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~-------------------~~~~v~~~hg~~~~~~r~ 375 (518)
..|...|+.+|+.. -+.++|||..|....+.+..+|..... .+.....+.|......|+
T Consensus 1125 SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~ 1204 (1567)
T KOG1015|consen 1125 SGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRK 1204 (1567)
T ss_pred CcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHH
Confidence 34555677777643 478999999999999999998864211 123456788999999999
Q ss_pred HHHHHHhcCC---ce-EEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEE
Q 010111 376 KTLKAFREGK---IQ-VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438 (518)
Q Consensus 376 ~~~~~f~~g~---~~-vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~ 438 (518)
...+.|.+-. .+ .||+|-+.+-|||+-.++-||+||..|++..-.|-+=|+.|.|+..-||++
T Consensus 1205 k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1205 KWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 9999998532 22 499999999999999999999999999999999999999999987666554
No 168
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.14 E-value=1.3e-10 Score=111.85 Aligned_cols=120 Identities=22% Similarity=0.185 Sum_probs=72.8
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhhcccC--CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHH
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVR--CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~--~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 145 (518)
..+.++++..+|+|||..++..+. .+...... ...+||+||. .+..||.+++.+++.....++..+.|.......
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~- 100 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALIS-YLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRL- 100 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHT-
T ss_pred CCCCEEEEECCCCCchhhhhhhhh-hhhhccccccccceeEeecc-chhhhhhhhhccccccccccccccccccccccc-
Confidence 457889999999999988665443 44332211 1249999999 888999999999986556677777776611111
Q ss_pred HHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhc--CCCCCCCcccEEEEechhHhh
Q 010111 146 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA--TRGFTLEHLCYLVVDETDRLL 210 (518)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~~~~vViDEah~~~ 210 (518)
........+++|+|++.+...... ...+.--++++||+||+|.+-
T Consensus 101 --------------------~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k 147 (299)
T PF00176_consen 101 --------------------SKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLK 147 (299)
T ss_dssp --------------------TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGT
T ss_pred --------------------cccccccceeeeccccccccccccccccccccccceeEEEecccccc
Confidence 011234579999999998811100 001112348999999999883
No 169
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.08 E-value=3.1e-09 Score=97.45 Aligned_cols=132 Identities=24% Similarity=0.276 Sum_probs=95.7
Q ss_pred hCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 45 ~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
..|+ .|++.|.-++-.+ .+.-++...||-|||+++.+|++-....+ ..|-|++.+..||..-++++..+
T Consensus 73 ~~g~-~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~l~a~~~AL~G----~~V~vvT~NdyLA~RD~~~~~~~ 141 (266)
T PF07517_consen 73 TLGL-RPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAALPAALNALQG----KGVHVVTSNDYLAKRDAEEMRPF 141 (266)
T ss_dssp HTS-----HHHHHHHHHH------HTTSEEEESTTSHHHHHHHHHHHHHHTTS----S-EEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-cccHHHHhhhhhc------ccceeEEecCCCCcHHHHHHHHHHHHHhc----CCcEEEeccHHHhhccHHHHHHH
Confidence 3566 8999999886544 23449999999999999888877665543 37999999999999999999999
Q ss_pred ccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHH-HhHhcC----CCC-CCCcc
Q 010111 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM-DHINAT----RGF-TLEHL 198 (518)
Q Consensus 125 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~-~~l~~~----~~~-~~~~~ 198 (518)
...+|++++..+++.+...+... ..++|+++|...+. +.+... ... ....+
T Consensus 142 y~~LGlsv~~~~~~~~~~~r~~~-----------------------Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~ 198 (266)
T PF07517_consen 142 YEFLGLSVGIITSDMSSEERREA-----------------------YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGF 198 (266)
T ss_dssp HHHTT--EEEEETTTEHHHHHHH-----------------------HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSS
T ss_pred HHHhhhccccCccccCHHHHHHH-----------------------HhCcccccccchhhHHHHHHHHhhccchhccCCC
Confidence 99999999999999886554332 24699999998774 344321 111 24678
Q ss_pred cEEEEechhHhh
Q 010111 199 CYLVVDETDRLL 210 (518)
Q Consensus 199 ~~vViDEah~~~ 210 (518)
+++|+||+|.++
T Consensus 199 ~~~ivDEvDs~L 210 (266)
T PF07517_consen 199 DFAIVDEVDSIL 210 (266)
T ss_dssp SEEEECTHHHHT
T ss_pred CEEEEeccceEE
Confidence 999999999874
No 170
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.79 E-value=6.6e-08 Score=98.66 Aligned_cols=112 Identities=20% Similarity=0.312 Sum_probs=89.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcC----CCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEE
Q 010111 332 EEKCIVFTSSVESTHRLCTLLNHFG----ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 407 (518)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~----~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~V 407 (518)
.+-++||.+--...-.+..+|.... ...+.+...|+.+...+..++.+....|..+++++|.+++..+-+.++..|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 4678899998888888888875432 123678889999999888899988889999999999999998888877776
Q ss_pred EEcCC------------------CCCccchhhhhhhcccCCCCCcEEEEeecchh
Q 010111 408 VNYDK------------------PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (518)
Q Consensus 408 I~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~ 444 (518)
|..+. ..|....+||.||+||. ++|.|+.+++....
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~arF 776 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRARF 776 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHHHHH
Confidence 65432 24566789999999998 79999988875443
No 171
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.71 E-value=1.4e-07 Score=100.13 Aligned_cols=72 Identities=18% Similarity=0.210 Sum_probs=55.6
Q ss_pred CceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCC--CCC--------cEEEEeecchhHHHHHHHHHH
Q 010111 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG--QLG--------RCFTLLHKDEVCLVKRFKKLL 454 (518)
Q Consensus 385 ~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g--~~g--------~~~~~~~~~e~~~~~~~~~~l 454 (518)
..+.+++-+++.+|-|.|.+-+++-+....|...-.|.+||..|.- +.| .-.++++..+..+++.|.+-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 5688999999999999999999999998888888999999999942 112 233445666666777766665
Q ss_pred Hh
Q 010111 455 QK 456 (518)
Q Consensus 455 ~~ 456 (518)
++
T Consensus 581 ~~ 582 (986)
T PRK15483 581 NS 582 (986)
T ss_pred Hh
Confidence 54
No 172
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.67 E-value=3.6e-09 Score=109.61 Aligned_cols=126 Identities=21% Similarity=0.284 Sum_probs=95.9
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHh
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 148 (518)
..++++-+|||+|||.+|.+.++..+... ++.++++++|-++|+..-.+.+.......|+++.-+.|+......
T Consensus 943 d~~~~~g~ptgsgkt~~ae~a~~~~~~~~--p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd~~---- 1016 (1230)
T KOG0952|consen 943 DLNFLLGAPTGSGKTVVAELAIFRALSYY--PGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPDVK---- 1016 (1230)
T ss_pred chhhhhcCCccCcchhHHHHHHHHHhccC--CCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCChh----
Confidence 57889999999999999999998877765 356899999999999887777766555458888888887654421
Q ss_pred hcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCC-CCCcccEEEEechhHhhhHhHHhHHHHH
Q 010111 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF-TLEHLCYLVVDETDRLLREAYQAWLPTV 221 (518)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~-~~~~~~~vViDEah~~~~~~~~~~~~~i 221 (518)
.-..++++|+||++.....+++... .+.+++.+|+||.|.+ ..++++.++.+
T Consensus 1017 --------------------~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hll-g~~rgPVle~i 1069 (1230)
T KOG0952|consen 1017 --------------------AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLL-GEDRGPVLEVI 1069 (1230)
T ss_pred --------------------heecCceEEcccccccCccccccchhhhccccceeecccccc-cCCCcceEEEE
Confidence 1235799999999988777765443 4788999999999965 44444444333
No 173
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.64 E-value=2.9e-06 Score=85.57 Aligned_cols=117 Identities=19% Similarity=0.217 Sum_probs=92.9
Q ss_pred CcEEEEcCChhhHHHHHHHHhhcC---CC------------ceeEEEccccCChHHHHHHHHHHhcC--C-ceEEEEcCc
Q 010111 333 EKCIVFTSSVESTHRLCTLLNHFG---EL------------RIKIKEYSGLQRQSVRSKTLKAFREG--K-IQVLVSSDA 394 (518)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~L~~~~---~~------------~~~v~~~hg~~~~~~r~~~~~~f~~g--~-~~vLvaT~~ 394 (518)
.++|||..+....+.+.+.|.... .. ...-..+.|..+..+|+..+++|.+- - .-++++|..
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 488999999888888888886531 10 12334678889999999999999853 2 246888999
Q ss_pred cccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchhHHHHH
Q 010111 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKR 449 (518)
Q Consensus 395 ~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~ 449 (518)
..-|||+-..+-+|+||.-+++..-.|.+-|+-|.|+..-|+++-.-.|...-+.
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkk 854 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKK 854 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHH
Confidence 9999999988899999999999999999999999999888888776555544343
No 174
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.63 E-value=7.9e-08 Score=88.85 Aligned_cols=69 Identities=26% Similarity=0.310 Sum_probs=48.0
Q ss_pred ccchhhHHHHHHhhCCCCCCCC-EEEECCCCchHHHHhHHHHHHHhh-----hcccCCccEEEEcCcHHHHHHHHHHHHH
Q 010111 50 SLFPVQVAVWQETIGPGLFERD-LCINSPTGSGKTLSYALPIVQTLS-----NRAVRCLRALVVLPTRDLALQVKDVFAA 123 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~-~li~apTGsGKT~~~~l~~~~~l~-----~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 123 (518)
++.+.|.+|+..++. ... .+|.||+|||||.+... ++..+. .....+.++|+++|+..-++++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALS----SNGITLIQGPPGTGKTTTLAS-IIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHH-HHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHH-HHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 356889999887764 455 89999999999965443 444441 1123566899999999999999888877
No 175
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.50 E-value=1.8e-07 Score=80.95 Aligned_cols=107 Identities=20% Similarity=0.245 Sum_probs=72.5
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcCC-CceeEEEccccCChHHHHHHHHHHhcCCceEEEEcC--ccccCCCCCC--CC
Q 010111 331 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD--AMTRGMDVEG--VN 405 (518)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~--~~~~GiDip~--v~ 405 (518)
.++++|||++|....+.+.+.+..... .++.+..- ....+..+++.|+++.-.||+++. .+++|||+|+ ++
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r 83 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLR 83 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhh
Confidence 358999999999999999999876431 11233322 355688999999999999999999 9999999996 77
Q ss_pred EEEEcCCCCC-c-----------------------------cchhhhhhhcccCCCCCcEEEEeec
Q 010111 406 NVVNYDKPAY-I-----------------------------KTYIHRAGRTARAGQLGRCFTLLHK 441 (518)
Q Consensus 406 ~VI~~~~p~s-~-----------------------------~~~~Qr~GR~gR~g~~g~~~~~~~~ 441 (518)
.||...+|-. + ....|.+||+-|...+-.+++++++
T Consensus 84 ~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 84 AVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 8999887721 1 1236889999998655444444443
No 176
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.43 E-value=3.5e-06 Score=89.57 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=40.5
Q ss_pred cCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHH
Q 010111 170 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222 (518)
Q Consensus 170 ~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~ 222 (518)
.....|+++||..|...+.. +.+++..+..||+||||++....-...+-.+.
T Consensus 5 y~~ggi~~~T~rIl~~DlL~-~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rly 56 (814)
T TIGR00596 5 YLEGGIFSITSRILVVDLLT-GIIPPELITGILVLRADRIIESSQEAFILRLY 56 (814)
T ss_pred hhcCCEEEEechhhHhHHhc-CCCCHHHccEEEEeecccccccccHHHHHHHH
Confidence 34568999999999888877 56899999999999999987655444444444
No 177
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.36 E-value=2.7e-06 Score=84.63 Aligned_cols=85 Identities=19% Similarity=0.176 Sum_probs=66.8
Q ss_pred HHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHH
Q 010111 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (518)
Q Consensus 42 ~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~ 121 (518)
.+...++.++..-|..|+.+++. ..-.||++|+|+|||.+....+++..... ...+|+++|+.--++|+++.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~~---~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQH---AGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHhc---CCceEEEcccchhHHHHHHHH
Confidence 55567888999999999887774 55679999999999998766566554443 347999999999999999998
Q ss_pred HHhccccCceEEEeec
Q 010111 122 AAIAPAVGLSVGLAVG 137 (518)
Q Consensus 122 ~~~~~~~~~~v~~~~g 137 (518)
.+. |++|.-++.
T Consensus 475 h~t----gLKVvRl~a 486 (935)
T KOG1802|consen 475 HKT----GLKVVRLCA 486 (935)
T ss_pred Hhc----CceEeeeeh
Confidence 875 566666554
No 178
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.32 E-value=1.4e-06 Score=89.56 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=97.5
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcc---------------------------
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--------------------------- 98 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~--------------------------- 98 (518)
+.| +|++.|..-+..++..+....+.++.+|||+|||++.+...+.+....+
T Consensus 18 fP~-qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~ 96 (945)
T KOG1132|consen 18 FPF-QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEK 96 (945)
T ss_pred ccC-CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCc
Confidence 445 7899999988887777667789999999999999987766665442211
Q ss_pred -----c------CCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCc--hH-------------HHHHHhhcCC
Q 010111 99 -----V------RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSS--IA-------------DEISELIKRP 152 (518)
Q Consensus 99 -----~------~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~--~~-------------~~~~~~~~~~ 152 (518)
. ..+++.|-+-|-.-..|+.+++++..-. .+..++-+... .+ ..+.......
T Consensus 97 s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~--vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~ 174 (945)
T KOG1132|consen 97 SEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR--VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSR 174 (945)
T ss_pred hhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCC--CceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccc
Confidence 0 1356777777777778888888886544 33232222111 00 1111111000
Q ss_pred cc-----------ccCc------------------cCCchhHHHhhcCCCcEEEeCChHHHHhHhcCC-CCCCCcccEEE
Q 010111 153 KL-----------EAGI------------------CYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFTLEHLCYLV 202 (518)
Q Consensus 153 ~~-----------~~~~------------------~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-~~~~~~~~~vV 202 (518)
.+ .... .+.. ...+.+.+.+|||+|-+..|++...+.. .+++.+ .+||
T Consensus 175 ~C~f~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPY-faSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVI 252 (945)
T KOG1132|consen 175 SCHFYKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPY-FASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVI 252 (945)
T ss_pred cccccccccccccccccCCCcccHHHHHHhCccCcCCcc-hhhhhhcccCcEEEechhhhcCHhhhccccccccc-cEEE
Confidence 00 0000 0011 1135667889999999999888765522 244443 4899
Q ss_pred EechhHhhh
Q 010111 203 VDETDRLLR 211 (518)
Q Consensus 203 iDEah~~~~ 211 (518)
|||||.+-+
T Consensus 253 fDEAHNiEd 261 (945)
T KOG1132|consen 253 FDEAHNIED 261 (945)
T ss_pred EeccccHHH
Confidence 999997643
No 179
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.26 E-value=2.8e-05 Score=80.01 Aligned_cols=73 Identities=19% Similarity=0.263 Sum_probs=58.1
Q ss_pred CCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccC--CCCC-----------cEEEEeecchhHHHHHH
Q 010111 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA--GQLG-----------RCFTLLHKDEVCLVKRF 450 (518)
Q Consensus 384 g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~--g~~g-----------~~~~~~~~~e~~~~~~~ 450 (518)
...+.+.+-.++-+|-|=|+|=.++-+....|...=.|.+||..|. ++.| .-.++++..+..+++.+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 4578999999999999999999999999999999999999999993 2333 23456677777777776
Q ss_pred HHHHHh
Q 010111 451 KKLLQK 456 (518)
Q Consensus 451 ~~~l~~ 456 (518)
.+-+.+
T Consensus 562 qkEI~~ 567 (985)
T COG3587 562 QKEIND 567 (985)
T ss_pred HHHHHH
Confidence 665544
No 180
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.12 E-value=1.9e-06 Score=75.88 Aligned_cols=59 Identities=14% Similarity=0.177 Sum_probs=40.4
Q ss_pred CccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHH
Q 010111 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (518)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~L 113 (518)
...++.|..++..+. ...-+++.||.|||||+.++..+++.+.++ ...+++|+-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g--~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEG--EYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTT--S-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhC--CCcEEEEEecCCCC
Confidence 356788999988877 366788999999999999999999888774 33477888777654
No 181
>PF13245 AAA_19: Part of AAA domain
Probab=98.08 E-value=1.7e-05 Score=58.10 Aligned_cols=53 Identities=32% Similarity=0.454 Sum_probs=38.7
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHH
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~ 121 (518)
+.-++|.||+|||||.+.+-.+...+......+.++++++||+..++.+.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 34456699999999977565555555321122558999999999999888877
No 182
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.06 E-value=1.5e-05 Score=83.03 Aligned_cols=101 Identities=20% Similarity=0.232 Sum_probs=84.9
Q ss_pred cEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCC-ceE-EEEcCccccCCCCCCCCEEEEcC
Q 010111 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQV-LVSSDAMTRGMDVEGVNNVVNYD 411 (518)
Q Consensus 334 ~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~-~~v-LvaT~~~~~GiDip~v~~VI~~~ 411 (518)
+++||+.-...+..+...|...+ +....+.|.|+...|...+..|..+. ..| +++......|+++....+|+..|
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~---~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d 617 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKG---FVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMD 617 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcc---cccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhc
Confidence 78888888888877777776433 67788999999999999999998542 333 67788899999999999999999
Q ss_pred CCCCccchhhhhhhcccCCCCCcEEE
Q 010111 412 KPAYIKTYIHRAGRTARAGQLGRCFT 437 (518)
Q Consensus 412 ~p~s~~~~~Qr~GR~gR~g~~g~~~~ 437 (518)
+.+++..-.|.+-|+.|-|+.-.+.+
T Consensus 618 ~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 618 PWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hhcChHHHHHHHHHHHHhcccceeee
Confidence 99999999999999999997665444
No 183
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.05 E-value=1.3e-05 Score=71.35 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=44.6
Q ss_pred ccchhhHHHHHHhhCCCCCC-CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHH
Q 010111 50 SLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~-~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~ 120 (518)
+|++-|.+|+..++. .+ +-+++.++.|+|||.+ +..+...+... +.++++++||...+..+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~---~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~---g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILT---SGDRVSVLQGPAGTGKTTL-LKALAEALEAA---GKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHH---CTCSEEEEEESTTSTHHHH-HHHHHHHHHHT---T--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh---cCCeEEEEEECCCCCHHHH-HHHHHHHHHhC---CCeEEEECCcHHHHHHHHHh
Confidence 467899999988864 23 3467889999999986 33355555442 46899999999988776554
No 184
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.04 E-value=8.2e-06 Score=80.89 Aligned_cols=66 Identities=26% Similarity=0.270 Sum_probs=48.8
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHH
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~ 122 (518)
.+.+-|.+|+...+. ...-.+|.||+|||||.+....+.+.+.++ .++|+.+||..-++.+.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~---~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~----k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAIN---NKDLLIIHGPPGTGKTRTLVEIISQLVKQK----KRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhc---cCCceEeeCCCCCCceeeHHHHHHHHHHcC----CeEEEEcCchHHHHHHHHHhc
Confidence 566788888765543 224568899999999998666555555443 489999999999888887543
No 185
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.04 E-value=9e-06 Score=74.99 Aligned_cols=134 Identities=16% Similarity=0.089 Sum_probs=86.8
Q ss_pred ccchhhHHHHHHhhCCCC------CCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHH
Q 010111 50 SLFPVQVAVWQETIGPGL------FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~------~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 123 (518)
.++..|.+++-+...... ....+++-..||.||-....-.+++++.++ ..++|+++.+..|-....+.++.
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G---r~r~vwvS~s~dL~~Da~RDl~D 113 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG---RKRAVWVSVSNDLKYDAERDLRD 113 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC---CCceEEEECChhhhhHHHHHHHH
Confidence 678999999765542211 235678899999999988777788887775 23799999999999998888988
Q ss_pred hccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCC--C-------
Q 010111 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF--T------- 194 (518)
Q Consensus 124 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~--~------- 194 (518)
+... .+.+..+..-.. . ....-.-.|+++|+..|...-...... .
T Consensus 114 IG~~-~i~v~~l~~~~~-----------~--------------~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W 167 (303)
T PF13872_consen 114 IGAD-NIPVHPLNKFKY-----------G--------------DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDW 167 (303)
T ss_pred hCCC-cccceechhhcc-----------C--------------cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHH
Confidence 7543 233322221000 0 001123479999999887765321110 0
Q ss_pred --CCcccEEEEechhHhhhH
Q 010111 195 --LEHLCYLVVDETDRLLRE 212 (518)
Q Consensus 195 --~~~~~~vViDEah~~~~~ 212 (518)
-+.=.+|||||||.+.+.
T Consensus 168 ~g~dfdgvivfDEcH~akn~ 187 (303)
T PF13872_consen 168 CGEDFDGVIVFDECHKAKNL 187 (303)
T ss_pred HhcCCCceEEeccchhcCCC
Confidence 012238999999988554
No 186
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.03 E-value=2.7e-05 Score=81.70 Aligned_cols=69 Identities=23% Similarity=0.215 Sum_probs=52.3
Q ss_pred CccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
..+.+.|.+|+..++. ....++|.||+|||||.+....+.+.+.. +.++|+++||..-+.++.+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~~----g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVKR----GLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHHc----CCCEEEEcCcHHHHHHHHHHHHhC
Confidence 3578999999877653 23678899999999998755544443333 348999999999999988888763
No 187
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.02 E-value=1.9e-05 Score=77.44 Aligned_cols=96 Identities=17% Similarity=0.208 Sum_probs=62.2
Q ss_pred CEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhc
Q 010111 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 150 (518)
-++|.|.+|||||++++- ++..+.. ...+.++++++++..|...+.+.+..-...
T Consensus 3 v~~I~G~aGTGKTvla~~-l~~~l~~-~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~----------------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALN-LAKELQN-SEEGKKVLYLCGNHPLRNKLREQLAKKYNP----------------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHH-HHHHhhc-cccCCceEEEEecchHHHHHHHHHhhhccc-----------------------
Confidence 468999999999998554 3333311 224557999999999998888777654200
Q ss_pred CCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhH
Q 010111 151 RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212 (518)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~ 212 (518)
......+..+..+.+.+.. .......+++||+||||++...
T Consensus 58 --------------------~~~~~~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~~ 98 (352)
T PF09848_consen 58 --------------------KLKKSDFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRTK 98 (352)
T ss_pred --------------------chhhhhhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhhc
Confidence 0012334444444443331 1234567999999999999873
No 188
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.90 E-value=7.4e-05 Score=66.52 Aligned_cols=72 Identities=24% Similarity=0.341 Sum_probs=55.4
Q ss_pred CCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 47 g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
++ -+++.|.+.....+.+ ..|+|.+.+.-+|.|||.+ ++|++..+..++. .-+.+++|. +|..|..+.++.-
T Consensus 21 ~i-liR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~--~LvrviVpk-~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 21 NI-LIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSV-IVPMLALALADGS--RLVRVIVPK-ALLEQMRQMLRSR 92 (229)
T ss_pred Cc-eeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccch-HHHHHHHHHcCCC--cEEEEEcCH-HHHHHHHHHHHHH
Confidence 44 8999999998888764 4679999999999999987 6777777665422 245566665 7899988887664
No 189
>PRK10536 hypothetical protein; Provisional
Probab=97.76 E-value=5.7e-05 Score=68.56 Aligned_cols=61 Identities=18% Similarity=0.131 Sum_probs=42.1
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHH
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~ 112 (518)
.++...+..|...+..+. .+..+++.||+|||||+.+...+++.+.++ ...++++.=|+.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~----~~~lV~i~G~aGTGKT~La~a~a~~~l~~~--~~~kIiI~RP~v~ 115 (262)
T PRK10536 55 SPILARNEAQAHYLKAIE----SKQLIFATGEAGCGKTWISAAKAAEALIHK--DVDRIIVTRPVLQ 115 (262)
T ss_pred ccccCCCHHHHHHHHHHh----cCCeEEEECCCCCCHHHHHHHHHHHHHhcC--CeeEEEEeCCCCC
Confidence 345556677877766544 356888999999999999888777766553 2335666656654
No 190
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.70 E-value=0.00011 Score=71.52 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=55.4
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
+.|...+|-|.+=+.++-..+-.+.++++.+|+|+|||.+.+--++......+....+.++.+-|..=.+....+++.+
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHHH
Confidence 4577788888877666555555678999999999999988665555554444445567888877766655555555544
No 191
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.69 E-value=0.00021 Score=74.25 Aligned_cols=69 Identities=19% Similarity=0.166 Sum_probs=48.8
Q ss_pred chhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhh-cccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 52 ~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~-~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
.++|+.|+...+ .++-++|.|++|||||.+... ++..+.. ......++++++||..-|..+.+.+....
T Consensus 154 ~d~Qk~Av~~a~----~~~~~vItGgpGTGKTt~v~~-ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~ 223 (615)
T PRK10875 154 VDWQKVAAAVAL----TRRISVISGGPGTGKTTTVAK-LLAALIQLADGERCRIRLAAPTGKAAARLTESLGKAL 223 (615)
T ss_pred CHHHHHHHHHHh----cCCeEEEEeCCCCCHHHHHHH-HHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhh
Confidence 589999975554 367889999999999986332 3333332 11234578899999999988888776543
No 192
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.57 E-value=0.00032 Score=58.45 Aligned_cols=72 Identities=18% Similarity=0.269 Sum_probs=51.0
Q ss_pred CChHHHHHHHHHHhcCC-ceEEEEcCccccCCCCCC--CCEEEEcCCCCC------------------------------
Q 010111 369 QRQSVRSKTLKAFREGK-IQVLVSSDAMTRGMDVEG--VNNVVNYDKPAY------------------------------ 415 (518)
Q Consensus 369 ~~~~~r~~~~~~f~~g~-~~vLvaT~~~~~GiDip~--v~~VI~~~~p~s------------------------------ 415 (518)
.+..+...+++.|+... ..||++|..+++|||+|+ ++.||...+|-.
T Consensus 31 ~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (141)
T smart00492 31 EDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLPD 110 (141)
T ss_pred CChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHHH
Confidence 44445788999998654 379999988999999996 678888776621
Q ss_pred -ccchhhhhhhcccCCCCCcEEEEee
Q 010111 416 -IKTYIHRAGRTARAGQLGRCFTLLH 440 (518)
Q Consensus 416 -~~~~~Qr~GR~gR~g~~g~~~~~~~ 440 (518)
...+.|.+||+-|...+-.++++++
T Consensus 111 a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 111 AMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHhCccccCcCceEEEEEEe
Confidence 1234678889888765443455544
No 193
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.55 E-value=0.00026 Score=59.05 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCc---eEEEEcCc--cccCCCCCC--CCEEEEcCCCCC------------------------------
Q 010111 373 VRSKTLKAFREGKI---QVLVSSDA--MTRGMDVEG--VNNVVNYDKPAY------------------------------ 415 (518)
Q Consensus 373 ~r~~~~~~f~~g~~---~vLvaT~~--~~~GiDip~--v~~VI~~~~p~s------------------------------ 415 (518)
+..++++.|++..- .||+++.- +++|||+|+ ++.||...+|-.
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFD 111 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 45788888987543 68988887 999999996 678888777621
Q ss_pred -ccchhhhhhhcccCCCCCcEEEEeec
Q 010111 416 -IKTYIHRAGRTARAGQLGRCFTLLHK 441 (518)
Q Consensus 416 -~~~~~Qr~GR~gR~g~~g~~~~~~~~ 441 (518)
.....|.+||.-|...+-.+++++++
T Consensus 112 a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 112 AMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred HHHHHHHHhCccccCccceEEEEEEec
Confidence 12346888999998655445555543
No 194
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.54 E-value=0.00021 Score=69.09 Aligned_cols=70 Identities=26% Similarity=0.223 Sum_probs=53.8
Q ss_pred cchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcc
Q 010111 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (518)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 126 (518)
+++-|.+++.. ...+++|.|..|||||.+.+.-+...+.....+..++|++++|+..+..+.+.+...+.
T Consensus 1 l~~eQ~~~i~~------~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS------TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcC
Confidence 46788887543 37899999999999999877766666665545566899999999999999988888643
No 195
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.53 E-value=0.00058 Score=70.90 Aligned_cols=67 Identities=19% Similarity=0.178 Sum_probs=47.0
Q ss_pred hhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhc-cc-CCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-AV-RCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 53 ~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~-~~-~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
++|+.|+..++. ++-++|.|++|||||.+..- ++..+... +. ...++++++||-.-|..+.+.+...
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~-ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~ 216 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVAR-LLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKA 216 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHH-HHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhh
Confidence 789888766653 67889999999999986332 33333321 11 1257999999998888877776654
No 196
>PRK06526 transposase; Provisional
Probab=97.51 E-value=0.00069 Score=62.68 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=42.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCC
Q 010111 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (518)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~ 101 (518)
.+++++.++..++++...+..|....| +..+.++++.||+|+|||..+.....+.... +
T Consensus 68 ~~le~fd~~~~~~~~~~~~~~l~~~~f-----------------i~~~~nlll~Gp~GtGKThLa~al~~~a~~~----g 126 (254)
T PRK06526 68 KSLEEFDFDHQRSLKRDTIAHLGTLDF-----------------VTGKENVVFLGPPGTGKTHLAIGLGIRACQA----G 126 (254)
T ss_pred CChhhccCccCCCcchHHHHHHhcCch-----------------hhcCceEEEEeCCCCchHHHHHHHHHHHHHC----C
Confidence 456666666655666666555544333 1236899999999999998755544433322 3
Q ss_pred ccEEEEcCcHHHHHH
Q 010111 102 LRALVVLPTRDLALQ 116 (518)
Q Consensus 102 ~~~lil~Pt~~La~Q 116 (518)
.++++... .++..+
T Consensus 127 ~~v~f~t~-~~l~~~ 140 (254)
T PRK06526 127 HRVLFATA-AQWVAR 140 (254)
T ss_pred CchhhhhH-HHHHHH
Confidence 35555433 344443
No 197
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.47 E-value=0.00074 Score=72.23 Aligned_cols=69 Identities=17% Similarity=0.159 Sum_probs=48.6
Q ss_pred HhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHH
Q 010111 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (518)
Q Consensus 44 ~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~ 119 (518)
...++ .+++.|.+|+..+. .++-+++.+++|||||.+. -.+++.+... .+...+++++||-.-|..+.+
T Consensus 318 ~~~~~-~l~~~Q~~Ai~~~~----~~~~~iitGgpGTGKTt~l-~~i~~~~~~~-~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 318 KKLRK-GLSEEQKQALDTAI----QHKVVILTGGPGTGKTTIT-RAIIELAEEL-GGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred HhcCC-CCCHHHHHHHHHHH----hCCeEEEECCCCCCHHHHH-HHHHHHHHHc-CCCceEEEEeCchHHHHHHHH
Confidence 34565 89999999988765 3678899999999999863 3344444432 112468889999887765443
No 198
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.42 E-value=0.0019 Score=69.42 Aligned_cols=65 Identities=12% Similarity=0.053 Sum_probs=46.2
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHH
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~ 118 (518)
.++ .+++-|.+|+..++. .++-+++.+++|+|||.+.- .+.+.+.. .+.++++++||-.-+..+.
T Consensus 349 ~~~-~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~-~i~~~~~~---~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 349 QHY-RLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLK-AAREAWEA---AGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred ccC-CCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHH-HHHHHHHh---CCCeEEEEeCcHHHHHHHH
Confidence 344 789999999887763 24567899999999997633 34444433 2557999999977665543
No 199
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.41 E-value=0.00086 Score=66.71 Aligned_cols=119 Identities=20% Similarity=0.230 Sum_probs=62.3
Q ss_pred EECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh-ccccCceEEEeecCCchHHHHHHhhcCC
Q 010111 74 INSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI-APAVGLSVGLAVGQSSIADEISELIKRP 152 (518)
Q Consensus 74 i~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~-~~~~~~~v~~~~g~~~~~~~~~~~~~~~ 152 (518)
..++||||||++.+..++....++ -...|+.|......+.....|..- ....=.+-...+++.....+.
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg---yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikk------- 71 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG---YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKK------- 71 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc---hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeee-------
Confidence 467999999998777777666554 224677777666655444333211 000000001111111111000
Q ss_pred ccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCC--C---CCCcccE-EEEechhHhhhH
Q 010111 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG--F---TLEHLCY-LVVDETDRLLRE 212 (518)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~--~---~~~~~~~-vViDEah~~~~~ 212 (518)
...+ ..-.....|+++|.+.|...+.+.+. . ++.+..+ .+-||||++-..
T Consensus 72 ----vn~f------sehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~ 127 (812)
T COG3421 72 ----VNNF------SEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTE 127 (812)
T ss_pred ----eccc------CccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhh
Confidence 0000 01224568999999999888765332 2 2344444 567999998543
No 200
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.33 E-value=0.0017 Score=68.35 Aligned_cols=152 Identities=18% Similarity=0.193 Sum_probs=88.8
Q ss_pred CCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHH
Q 010111 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (518)
Q Consensus 35 l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La 114 (518)
+.|.+.+. -+..+..-|++|+-.++. ...-.+|.|=+|||||.+... ++..|.. .+.++|+.+=|-.-+
T Consensus 658 ~~p~~~~~----~~~~LN~dQr~A~~k~L~---aedy~LI~GMPGTGKTTtI~~-LIkiL~~---~gkkVLLtsyThsAV 726 (1100)
T KOG1805|consen 658 LIPKIKKI----ILLRLNNDQRQALLKALA---AEDYALILGMPGTGKTTTISL-LIKILVA---LGKKVLLTSYTHSAV 726 (1100)
T ss_pred cCchhhHH----HHhhcCHHHHHHHHHHHh---ccchheeecCCCCCchhhHHH-HHHHHHH---cCCeEEEEehhhHHH
Confidence 55666653 133677899999766654 456678999999999987554 3333333 234688877776655
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCC
Q 010111 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (518)
Q Consensus 115 ~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 194 (518)
..+.-.+..+ ++.+.-+-.+....+..+++.. ..........+ .+.....+.|+.||---+.+.+ |.
T Consensus 727 DNILiKL~~~----~i~~lRLG~~~kih~~v~e~~~---~~~~s~ks~~~-l~~~~~~~~IVa~TClgi~~pl-----f~ 793 (1100)
T KOG1805|consen 727 DNILIKLKGF----GIYILRLGSEEKIHPDVEEFTL---TNETSEKSYAD-LKKFLDQTSIVACTCLGINHPL-----FV 793 (1100)
T ss_pred HHHHHHHhcc----CcceeecCCccccchHHHHHhc---ccccchhhHHH-HHHHhCCCcEEEEEccCCCchh-----hh
Confidence 5554444433 5554444555556666655432 00000111222 2333456788888843333322 33
Q ss_pred CCcccEEEEechhHhh
Q 010111 195 LEHLCYLVVDETDRLL 210 (518)
Q Consensus 195 ~~~~~~vViDEah~~~ 210 (518)
.+.|++.|+|||-.+.
T Consensus 794 ~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 794 NRQFDYCIIDEASQIL 809 (1100)
T ss_pred ccccCEEEEccccccc
Confidence 4569999999999763
No 201
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.30 E-value=0.0021 Score=70.16 Aligned_cols=65 Identities=11% Similarity=-0.070 Sum_probs=46.3
Q ss_pred hCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHH
Q 010111 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (518)
Q Consensus 45 ~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~ 117 (518)
..|+ .+++-|.+|+..++. .+.-+++.++.|+|||.+ +-.+.+.+.. .+.+++.++||-.-|..+
T Consensus 342 ~~g~-~Ls~eQr~Av~~il~---s~~v~vv~G~AGTGKTT~-l~~~~~~~e~---~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 342 ARGL-VLSGEQADALAHVTD---GRDLGVVVGYAGTGKSAM-LGVAREAWEA---AGYEVRGAALSGIAAENL 406 (988)
T ss_pred hcCC-CCCHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHH-HHHHHHHHHH---cCCeEEEecCcHHHHHHH
Confidence 3455 799999999887763 233468999999999986 3444444443 356799999997765544
No 202
>PRK08181 transposase; Validated
Probab=97.30 E-value=0.0013 Score=61.12 Aligned_cols=75 Identities=19% Similarity=0.220 Sum_probs=43.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHhC-CCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccC
Q 010111 22 SLFEDCPLDHLPCLDPRLKVALQNM-GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (518)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~l~~~-g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~ 100 (518)
..++++.++..++++.....++... .| +..++++++.||+|+|||..+.....+.+.+
T Consensus 75 ~tle~fd~~~~~~~~~~~~~~L~~~~~~-----------------~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~---- 133 (269)
T PRK08181 75 KTLDSFDFEAVPMVSKAQVMAIAAGDSW-----------------LAKGANLLLFGPPGGGKSHLAAAIGLALIEN---- 133 (269)
T ss_pred CCHhhCCccCCCCCCHHHHHHHHHHHHH-----------------HhcCceEEEEecCCCcHHHHHHHHHHHHHHc----
Confidence 3456666555556666665555432 12 1147889999999999997654433333322
Q ss_pred CccEEEEcCcHHHHHHHH
Q 010111 101 CLRALVVLPTRDLALQVK 118 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~ 118 (518)
+.+++++ +..+|..++.
T Consensus 134 g~~v~f~-~~~~L~~~l~ 150 (269)
T PRK08181 134 GWRVLFT-RTTDLVQKLQ 150 (269)
T ss_pred CCceeee-eHHHHHHHHH
Confidence 3355554 4556665553
No 203
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.28 E-value=0.00071 Score=72.08 Aligned_cols=70 Identities=20% Similarity=0.107 Sum_probs=53.5
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
.|++-|.+|+.. .+..++|.|..|||||.+...-+...+...+.+..++|+++-|+..|..+.+.+..+.
T Consensus 2 ~Ln~~Q~~av~~------~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 478889988532 2567899999999999986665555554433445589999999999999988888764
No 204
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.19 E-value=0.0016 Score=60.24 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=35.1
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHH
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~ 122 (518)
++.++++.||+|+|||..+.....+.+ +. + .-++++++.+|+.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~---g-~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KA---G-ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-Hc---C-CeEEEEEHHHHHHHHHHHHh
Confidence 689999999999999987555444433 32 3 34555667788887766555
No 205
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=97.18 E-value=0.0011 Score=71.53 Aligned_cols=71 Identities=21% Similarity=0.120 Sum_probs=54.3
Q ss_pred CccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
..|++-|.+|+.. ....++|.|..|||||.+...-+...+.....+..++|+++-|+..|..+.+.+.++.
T Consensus 3 ~~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA------PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 3688999998532 2468999999999999986555544444333445689999999999999999888874
No 206
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.16 E-value=0.0048 Score=67.96 Aligned_cols=77 Identities=14% Similarity=0.020 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHH
Q 010111 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (518)
Q Consensus 34 ~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~L 113 (518)
+.++..+......++ .|++-|.+|+..+.. .++-+++.|+.|+|||.+ +-++.+.+.. .+.+++.++||-.-
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~---~~r~~~v~G~AGTGKTt~-l~~~~~~~e~---~G~~V~g~ApTgkA 437 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAG---PARIAAVVGRAGAGKTTM-MKAAREAWEA---AGYRVVGGALAGKA 437 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhc---cCCeEEEEeCCCCCHHHH-HHHHHHHHHH---cCCeEEEEcCcHHH
Confidence 345555555444454 799999999877642 356678999999999986 3344444443 35689999999776
Q ss_pred HHHHH
Q 010111 114 ALQVK 118 (518)
Q Consensus 114 a~Q~~ 118 (518)
|..+.
T Consensus 438 A~~L~ 442 (1102)
T PRK13826 438 AEGLE 442 (1102)
T ss_pred HHHHH
Confidence 65543
No 207
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.14 E-value=0.0068 Score=49.94 Aligned_cols=20 Identities=45% Similarity=0.567 Sum_probs=13.6
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 010111 69 ERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l 88 (518)
++.++|.||+|+|||.+...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~ 23 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKR 23 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHH
Confidence 56789999999999987444
No 208
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.11 E-value=0.0013 Score=70.81 Aligned_cols=70 Identities=17% Similarity=0.088 Sum_probs=53.7
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
.|++-|.+|+.. ....++|.|..|||||.+..--+...+.....+..++|+++-|+..|..+.+.+.++.
T Consensus 9 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 9 SLNDKQREAVAA------PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred hcCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 588999998532 2468999999999999986555544443333345689999999999999999888864
No 209
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.11 E-value=0.0017 Score=59.95 Aligned_cols=81 Identities=22% Similarity=0.319 Sum_probs=62.2
Q ss_pred HHHHHHhcCCceEEEEcCccccCCCCCC--------CCEEEEcCCCCCccchhhhhhhcccCCCCC-cEEEEee---cch
Q 010111 376 KTLKAFREGKIQVLVSSDAMTRGMDVEG--------VNNVVNYDKPAYIKTYIHRAGRTARAGQLG-RCFTLLH---KDE 443 (518)
Q Consensus 376 ~~~~~f~~g~~~vLvaT~~~~~GiDip~--------v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g-~~~~~~~---~~e 443 (518)
...+.|.+|+.+|+|.++.++.||.+.. -++-|...+|||.+..+|..||+.|.|+.. -.+.++. +.|
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 5677899999999999999999998763 336778899999999999999999999743 3444443 355
Q ss_pred hHHHHHHHHHHHh
Q 010111 444 VCLVKRFKKLLQK 456 (518)
Q Consensus 444 ~~~~~~~~~~l~~ 456 (518)
..+...+.+-|+.
T Consensus 132 ~Rfas~va~rL~s 144 (278)
T PF13871_consen 132 RRFASTVARRLES 144 (278)
T ss_pred HHHHHHHHHHHhh
Confidence 5555555555554
No 210
>PRK04296 thymidine kinase; Provisional
Probab=97.06 E-value=0.0019 Score=57.13 Aligned_cols=37 Identities=22% Similarity=0.256 Sum_probs=24.2
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcC
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~P 109 (518)
|.-.++.+|+|+|||..++-. +.++.. .+.+++++-|
T Consensus 2 g~i~litG~~GsGKTT~~l~~-~~~~~~---~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQR-AYNYEE---RGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHH-HHHHHH---cCCeEEEEec
Confidence 345688999999999764443 333332 2447888766
No 211
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.05 E-value=0.0033 Score=66.62 Aligned_cols=86 Identities=17% Similarity=0.080 Sum_probs=59.9
Q ss_pred hCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 45 ~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
...-..+++-|.+|+. . ...+++|.|..|||||.+...-+...+........++|+++.|+..|..+.+.+...
T Consensus 191 ~~e~~~L~~~Q~~av~---~---~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 191 QVESSPLNPSQARAVV---N---GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred hccCCCCCHHHHHHHh---C---CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 3333479999999852 1 245789999999999998655544444443344568999999999999999888776
Q ss_pred ccccCceEEEee
Q 010111 125 APAVGLSVGLAV 136 (518)
Q Consensus 125 ~~~~~~~v~~~~ 136 (518)
....++.+..++
T Consensus 265 lg~~~v~v~TFH 276 (684)
T PRK11054 265 LGTEDITARTFH 276 (684)
T ss_pred cCCCCcEEEeHH
Confidence 543344444443
No 212
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.05 E-value=0.0055 Score=60.13 Aligned_cols=61 Identities=23% Similarity=0.208 Sum_probs=32.6
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc--CcHHHHHHHHHHHHHhccccCceE
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSV 132 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~--Pt~~La~Q~~~~~~~~~~~~~~~v 132 (518)
+..+++.+|||+|||.+..--+..........+.++.+++ +.|.-+.. +++.++...++++
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~e---QL~~~a~~lgvpv 236 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKK---QIQTYGDIMGIPV 236 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHH---HHHHHhhcCCcce
Confidence 3568899999999998865433322222111233455553 33343332 3555555555543
No 213
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.03 E-value=0.00096 Score=58.22 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=27.9
Q ss_pred CCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHH
Q 010111 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (518)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~ 117 (518)
..++++++.||+|+|||..+...+.+.+.+ +..++++ +..+|...+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~----g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK----GYSVLFI-TASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT----T--EEEE-EHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC----CcceeEe-ecCceeccc
Confidence 357899999999999998765544443332 3356554 455665554
No 214
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.95 E-value=0.0018 Score=63.69 Aligned_cols=63 Identities=25% Similarity=0.324 Sum_probs=43.6
Q ss_pred cchhhHHHHHHhhCCC--CCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHH
Q 010111 51 LFPVQVAVWQETIGPG--LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (518)
Q Consensus 51 ~~~~Q~~a~~~~~~~~--~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~ 117 (518)
|.+-|++++..+++.+ ..+.++++.|+-|+|||+.+-. +.+.+.. .+..+++++||-.-|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~-i~~~~~~---~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKA-IIDYLRS---RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHH-HHHHhcc---ccceEEEecchHHHHHhc
Confidence 5677888887775443 3568899999999999986332 3333322 345789999997766544
No 215
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.91 E-value=0.0019 Score=59.39 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=18.7
Q ss_pred CCCEEEECCCCchHHHHhHHHHH
Q 010111 69 ERDLCINSPTGSGKTLSYALPIV 91 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~ 91 (518)
.-+.++.||+|+|||-++++.+-
T Consensus 57 lp~~LFyGPpGTGKTStalafar 79 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTALAFAR 79 (346)
T ss_pred CceEEeeCCCCCcHhHHHHHHHH
Confidence 46789999999999998765443
No 216
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.84 E-value=0.0031 Score=57.52 Aligned_cols=86 Identities=21% Similarity=0.268 Sum_probs=61.0
Q ss_pred CCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCC-chHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEe
Q 010111 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQS-SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (518)
Q Consensus 100 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~ 178 (518)
..+.+|||+.+-.-|..+.+.++.+... +..|.-+.+.. ...++...+. ....+|.||
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~--------------------~~~~~i~vG 183 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLK--------------------KTRVHIAVG 183 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHH--------------------hCCceEEEe
Confidence 3578999999988888888888876311 23333333332 4444443321 135799999
Q ss_pred CChHHHHhHhcCCCCCCCcccEEEEechh
Q 010111 179 TPGRLMDHINATRGFTLEHLCYLVVDETD 207 (518)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vViDEah 207 (518)
||+|+..++.. +.+.++++.+||+|--|
T Consensus 184 TP~Rl~kLle~-~~L~l~~l~~ivlD~s~ 211 (252)
T PF14617_consen 184 TPGRLSKLLEN-GALSLSNLKRIVLDWSY 211 (252)
T ss_pred ChHHHHHHHHc-CCCCcccCeEEEEcCCc
Confidence 99999999987 67899999999999866
No 217
>PRK06921 hypothetical protein; Provisional
Probab=96.79 E-value=0.0089 Score=55.84 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=27.9
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHH
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~ 117 (518)
+.++++.|++|+|||..+.. +...+... .+..++++. ..++..++
T Consensus 117 ~~~l~l~G~~G~GKThLa~a-ia~~l~~~--~g~~v~y~~-~~~l~~~l 161 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTA-AANELMRK--KGVPVLYFP-FVEGFGDL 161 (266)
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHhhh--cCceEEEEE-HHHHHHHH
Confidence 57899999999999976443 44444432 134566655 44554443
No 218
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.75 E-value=0.00015 Score=74.76 Aligned_cols=77 Identities=21% Similarity=0.281 Sum_probs=58.9
Q ss_pred CcHHHHHHHHHhc--CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhc---CCceEEEEc
Q 010111 318 LKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE---GKIQVLVSS 392 (518)
Q Consensus 318 ~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~---g~~~vLvaT 392 (518)
.|...|...++.. .+++++||..-....+.+.+++...+ ....+.|......|+..+.+|.. ...-.|++|
T Consensus 615 ~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~----~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllst 690 (696)
T KOG0383|consen 615 GKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG----KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLST 690 (696)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC----cceeccCCccchhhhhhccccCCCCccceEEEeec
Confidence 4444555555533 57899999999999999999887543 66788999999999999999983 344568899
Q ss_pred CccccC
Q 010111 393 DAMTRG 398 (518)
Q Consensus 393 ~~~~~G 398 (518)
...+.|
T Consensus 691 ra~g~g 696 (696)
T KOG0383|consen 691 RAGGLG 696 (696)
T ss_pred ccccCC
Confidence 887655
No 219
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.74 E-value=0.0061 Score=65.45 Aligned_cols=70 Identities=21% Similarity=0.123 Sum_probs=53.3
Q ss_pred cchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcc
Q 010111 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (518)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 126 (518)
|++-|.+|+.. ...+++|.|..|||||.+.+--+...+...+....++|+++.|+..|.++.+.+.+...
T Consensus 2 Ln~~Q~~av~~------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 67889887532 25689999999999999866656555544333455799999999999999988877643
No 220
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.51 E-value=0.028 Score=50.90 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=28.3
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHH
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~ 119 (518)
..+++.||+|+|||-. +-++.+.+.+. .++.+++++... +......+
T Consensus 35 ~~l~l~G~~G~GKTHL-L~Ai~~~~~~~-~~~~~v~y~~~~-~f~~~~~~ 81 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHL-LQAIANEAQKQ-HPGKRVVYLSAE-EFIREFAD 81 (219)
T ss_dssp SEEEEEESTTSSHHHH-HHHHHHHHHHH-CTTS-EEEEEHH-HHHHHHHH
T ss_pred CceEEECCCCCCHHHH-HHHHHHHHHhc-cccccceeecHH-HHHHHHHH
Confidence 3578999999999984 44455555443 235577777643 44444333
No 221
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.51 E-value=0.017 Score=48.40 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchHHHHh
Q 010111 69 ERDLCINSPTGSGKTLSY 86 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (518)
++.+++.||+|+|||..+
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 678999999999999753
No 222
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.45 E-value=0.0074 Score=65.46 Aligned_cols=99 Identities=16% Similarity=0.072 Sum_probs=67.9
Q ss_pred CCCCCEEEECCCCchHHHHhHHHHHHHhhhc--------------ccCCccEEEEcCcHHHHHHHHHHHHHhccccCceE
Q 010111 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNR--------------AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSV 132 (518)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~~l~~~~~l~~~--------------~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v 132 (518)
..|++++..-..|.|||..-+...+..+... .......||++|. ++..||.+++.+.+... +++
T Consensus 372 ~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv 449 (1394)
T KOG0298|consen 372 KHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKV 449 (1394)
T ss_pred cCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceE
Confidence 3467888889999999998665544332111 0123458999999 77789999999998764 788
Q ss_pred EEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHh
Q 010111 133 GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188 (518)
Q Consensus 133 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~ 188 (518)
..+.|-........ ..--++|||++|+..|.+-+.
T Consensus 450 ~~Y~Girk~~~~~~---------------------~el~~yDIVlTtYdiLr~El~ 484 (1394)
T KOG0298|consen 450 LLYFGIRKTFWLSP---------------------FELLQYDIVLTTYDILRNELY 484 (1394)
T ss_pred EEEechhhhcccCc---------------------hhhhccCEEEeehHHHHhHhh
Confidence 88887543221110 011357999999999977664
No 223
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.37 E-value=0.0031 Score=64.00 Aligned_cols=107 Identities=19% Similarity=0.188 Sum_probs=70.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcCCC----ceeEEEccccCChHHHHHHHHHHh----cCCceEEEEc--CccccCCCC
Q 010111 332 EEKCIVFTSSVESTHRLCTLLNHFGEL----RIKIKEYSGLQRQSVRSKTLKAFR----EGKIQVLVSS--DAMTRGMDV 401 (518)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~----~~~v~~~hg~~~~~~r~~~~~~f~----~g~~~vLvaT--~~~~~GiDi 401 (518)
++.+++|++|.+-...+.+...+.|.. +.+-..+-..-+ -+.+++.|. .|.-.+|+|. .-+++|||+
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINF 705 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccc
Confidence 588999999999999998888765522 112222222222 345666665 4554666655 568999999
Q ss_pred CC--CCEEEEcCCCCC--------------------c------------cchhhhhhhcccCCCCCcEEEEeec
Q 010111 402 EG--VNNVVNYDKPAY--------------------I------------KTYIHRAGRTARAGQLGRCFTLLHK 441 (518)
Q Consensus 402 p~--v~~VI~~~~p~s--------------------~------------~~~~Qr~GR~gR~g~~g~~~~~~~~ 441 (518)
.+ ++.||..++|-. + ...-|-+|||-|.-++=.++++++.
T Consensus 706 ~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDK 779 (821)
T ss_pred ccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehh
Confidence 86 788888887621 0 1235889999998666566666654
No 224
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.36 E-value=0.051 Score=47.91 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=33.4
Q ss_pred EEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 72 ~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
+++.||+|+|||...+--+.+.+.+ +.+++|++. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~----g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR----GEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC----CCcEEEEEC-CCCHHHHHHHHHHc
Confidence 6899999999998765555554433 346888864 35566777776665
No 225
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.35 E-value=0.015 Score=63.05 Aligned_cols=72 Identities=24% Similarity=0.224 Sum_probs=54.5
Q ss_pred CccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcc
Q 010111 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (518)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 126 (518)
..|+|-|.+|+.. ....++|.|..|||||.+..--+...+........++|+++-|+..|..+.+.+.+++.
T Consensus 3 ~~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT------TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC------CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 3588999998532 25689999999999999866655544443333445799999999999999888887754
No 226
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.33 E-value=0.015 Score=53.29 Aligned_cols=42 Identities=21% Similarity=0.273 Sum_probs=26.0
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHH
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q 116 (518)
..+++.+++|+|||..+.. +...+... +..++++ +..+|...
T Consensus 100 ~~~~l~G~~GtGKThLa~a-ia~~l~~~---g~~v~~i-t~~~l~~~ 141 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAA-ICNELLLR---GKSVLII-TVADIMSA 141 (244)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHhc---CCeEEEE-EHHHHHHH
Confidence 4789999999999986443 44444442 3355555 34444433
No 227
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.28 E-value=0.03 Score=54.03 Aligned_cols=39 Identities=26% Similarity=0.525 Sum_probs=30.2
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHH
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l 88 (518)
.++|||...|..++..-.-.+-.++.||.|+|||..+..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~ 41 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER 41 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH
Confidence 458999999998886422235688999999999986554
No 228
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.20 E-value=0.019 Score=55.59 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=51.6
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHH
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 147 (518)
.++.+.+.||||-|||.+.+--+.......+ ...-.||-+-|--.+ -.++++.+++.+++++.++............
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~~vv~~~~el~~ai~~ 278 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKK-KKKVAIITTDTYRIG--AVEQLKTYADIMGVPLEVVYSPKELAEAIEA 278 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhcc-CcceEEEEeccchhh--HHHHHHHHHHHhCCceEEecCHHHHHHHHHH
Confidence 3678889999999999875543433331221 222345545543333 4677888888889999999888777776554
Q ss_pred h
Q 010111 148 L 148 (518)
Q Consensus 148 ~ 148 (518)
+
T Consensus 279 l 279 (407)
T COG1419 279 L 279 (407)
T ss_pred h
Confidence 3
No 229
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.16 E-value=0.031 Score=54.44 Aligned_cols=72 Identities=14% Similarity=0.169 Sum_probs=39.4
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchH
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~ 142 (518)
.|..+++.+|||+|||.....-+.......+ ..++.+++ +...-.--.+.++.+++..++.+..........
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G--~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~ 207 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFG--ASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ 207 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CCeEEEEe-cccccccHHHHHHHHHHHcCCceEecCCcccHH
Confidence 4678899999999999876554433332211 12444443 222111123455555555677666555544443
No 230
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.10 E-value=0.01 Score=56.07 Aligned_cols=66 Identities=20% Similarity=0.182 Sum_probs=44.7
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHH
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La 114 (518)
.|+..-.-.|.-|+..++.. .=.=+.+.++.|||||+.++.+.+++....+ ...++++.=|+..+.
T Consensus 224 wGi~prn~eQ~~ALdlLld~--dI~lV~L~G~AGtGKTlLALaAgleqv~e~~-~y~KiiVtRp~vpvG 289 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDD--DIDLVSLGGKAGTGKTLLALAAGLEQVLERK-RYRKIIVTRPTVPVG 289 (436)
T ss_pred hccCcccHHHHHHHHHhcCC--CCCeEEeeccCCccHhHHHHHHHHHHHHHHh-hhceEEEecCCcCcc
Confidence 57755556676666655531 0134567999999999999988888876653 233677777776654
No 231
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.09 E-value=0.57 Score=56.18 Aligned_cols=65 Identities=17% Similarity=0.143 Sum_probs=46.7
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHH
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~ 120 (518)
.+++-|.+|+..++.. ..+-.+|.++.|+|||.+ +-.+.+.+.. .+.++++++||-.-+.++.+.
T Consensus 429 ~Ls~~Q~~Av~~il~s--~~~v~ii~G~aGTGKTt~-l~~l~~~~~~---~G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTS--TKRFIIINGFGGTGSTEI-AQLLLHLASE---QGYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred CCCHHHHHHHHHHHhC--CCCeEEEEECCCCCHHHH-HHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHH
Confidence 6889999998777641 235678899999999976 3334444433 356899999998877666554
No 232
>PRK12377 putative replication protein; Provisional
Probab=96.05 E-value=0.02 Score=52.74 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=29.2
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHH
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~ 120 (518)
..++++.||+|+|||..+.. +.+.+... +..++++ +..+|..++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~A-Ia~~l~~~---g~~v~~i-~~~~l~~~l~~~ 147 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAA-IGNRLLAK---GRSVIVV-TVPDVMSRLHES 147 (248)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHc---CCCeEEE-EHHHHHHHHHHH
Confidence 36799999999999976444 44444432 3345444 455666655443
No 233
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.04 E-value=0.0089 Score=49.68 Aligned_cols=42 Identities=21% Similarity=0.162 Sum_probs=26.2
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHH
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La 114 (518)
+..+++.+|+|+|||..+.. +...+... ...++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~~---~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGPP---GGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCCC---CCCEEEECCEEccc
Confidence 56789999999999986443 22222221 12477777665443
No 234
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.03 E-value=0.038 Score=63.26 Aligned_cols=125 Identities=17% Similarity=0.156 Sum_probs=78.1
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccC
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 129 (518)
++|+-|.+|+. ..+++++|.|..|||||.+..--++..+..+ ..-.+++++|=|+..|..+.+.+.......
T Consensus 1 ~~t~~Q~~ai~------~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-~~~~~il~~tFt~~aa~e~~~ri~~~l~~~- 72 (1232)
T TIGR02785 1 QWTDEQWQAIY------TRGQNILVSASAGSGKTAVLVERIIKKILRG-VDIDRLLVVTFTNAAAREMKERIEEALQKA- 72 (1232)
T ss_pred CCCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-CCHhhEEEEeccHHHHHHHHHHHHHHHHHH-
Confidence 36888999863 1488999999999999999776676666544 233469999999999988888777643221
Q ss_pred ceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCC-CcccEEEEechhH
Q 010111 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTL-EHLCYLVVDETDR 208 (518)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~-~~~~~vViDEah~ 208 (518)
+. ..+..... .+.+..-...-|+|-..+...+.+.....+ =+..+=|.||...
T Consensus 73 ~~------~~p~~~~L--------------------~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 73 LQ------QEPNSKHL--------------------RRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred Hh------cCchhHHH--------------------HHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 00 00000111 111222346779999988766554222211 0124556898875
No 235
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.03 E-value=0.15 Score=43.53 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=23.3
Q ss_pred EEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHH
Q 010111 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (518)
Q Consensus 72 ~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~ 112 (518)
+++.||+|+|||..+...+..... .+..++++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~----~~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT----KGGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh----cCCEEEEEECCcc
Confidence 578999999999865443333222 2346777765433
No 236
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.00 E-value=0.022 Score=58.43 Aligned_cols=75 Identities=21% Similarity=0.105 Sum_probs=52.6
Q ss_pred hhhHHHHHHhhCCC-CCC----CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccc
Q 010111 53 PVQVAVWQETIGPG-LFE----RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (518)
Q Consensus 53 ~~Q~~a~~~~~~~~-~~~----~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~ 127 (518)
|||.-.+..++..- ..| +.+++.-|=|-|||......++-.+.-.+..+..+++++++++-|..+++.+..+...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 67776665555320 012 4678888999999986555544444333345678999999999999999998887654
No 237
>PRK14974 cell division protein FtsY; Provisional
Probab=95.98 E-value=0.11 Score=50.18 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=22.2
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~ 108 (518)
.-+++.+++|+|||.+....+ ..+... +.+++++.
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~~---g~~V~li~ 175 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKKN---GFSVVIAA 175 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHHc---CCeEEEec
Confidence 356789999999998754433 334332 33566654
No 238
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.94 E-value=0.034 Score=59.14 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=26.3
Q ss_pred chhhHHHHHHhhCCCCCC---CCE-EEECCCCchHHHHhHHHHHHHhh
Q 010111 52 FPVQVAVWQETIGPGLFE---RDL-CINSPTGSGKTLSYALPIVQTLS 95 (518)
Q Consensus 52 ~~~Q~~a~~~~~~~~~~~---~~~-li~apTGsGKT~~~~l~~~~~l~ 95 (518)
++-|.+.+...+...+.+ .++ +|.|+||+|||.+.-. +++.|.
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~-VLrELq 806 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYS-VIQLLQ 806 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHH-HHHHHH
Confidence 455666555544443322 344 5999999999998544 445553
No 239
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.91 E-value=0.054 Score=55.14 Aligned_cols=46 Identities=17% Similarity=0.144 Sum_probs=27.6
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHH
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~ 118 (518)
..+++.||+|+|||..... +.+.+... ..+.+++++. ..++..++.
T Consensus 149 ~~l~l~G~~G~GKThL~~a-i~~~~~~~-~~~~~v~yi~-~~~~~~~~~ 194 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHA-IGNYILEK-NPNAKVVYVT-SEKFTNDFV 194 (450)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHh-CCCCeEEEEE-HHHHHHHHH
Confidence 4689999999999986443 33444332 1244566664 445544433
No 240
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.86 E-value=0.019 Score=57.59 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=16.2
Q ss_pred CCEEEECCCCchHHHHhHHH
Q 010111 70 RDLCINSPTGSGKTLSYALP 89 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~ 89 (518)
+.+++.||.|+|||.++.+.
T Consensus 41 ha~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARIL 60 (484)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34799999999999876553
No 241
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.85 E-value=0.057 Score=51.66 Aligned_cols=41 Identities=27% Similarity=0.277 Sum_probs=32.2
Q ss_pred CCccchhhHHHHHHhhCCCCCCC---CEEEECCCCchHHHHhHH
Q 010111 48 ISSLFPVQVAVWQETIGPGLFER---DLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 48 ~~~~~~~Q~~a~~~~~~~~~~~~---~~li~apTGsGKT~~~~l 88 (518)
+..++|||..+|..+...+..|+ -.++.||.|+||+..+..
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~ 45 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA 45 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH
Confidence 35789999999988776554553 588999999999986554
No 242
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.85 E-value=0.053 Score=52.17 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=16.2
Q ss_pred CCEEEECCCCchHHHHhHH
Q 010111 70 RDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l 88 (518)
.++|+.+|+|+|||..+-+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 5889999999999986554
No 243
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.84 E-value=0.0037 Score=53.81 Aligned_cols=55 Identities=18% Similarity=0.281 Sum_probs=26.8
Q ss_pred EEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCc
Q 010111 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 130 (518)
Q Consensus 73 li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~ 130 (518)
++.|+-|-|||.+..+.+...+..+ ..+++|.+|+.+-++.+.+.+..-++..+.
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~---~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~ 55 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG---KIRILVTAPSPENVQTLFEFAEKGLKALGY 55 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS--------EEEE-SS--S-HHHHHCC---------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc---CceEEEecCCHHHHHHHHHHHHhhcccccc
Confidence 5789999999988666554433332 247999999999887777766555444333
No 244
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.83 E-value=0.027 Score=53.26 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=17.0
Q ss_pred CCCEEEECCCCchHHHHhHHHH
Q 010111 69 ERDLCINSPTGSGKTLSYALPI 90 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~ 90 (518)
++.+++++|||+|||.+....+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa 215 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999998755433
No 245
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.82 E-value=0.11 Score=54.72 Aligned_cols=79 Identities=16% Similarity=0.131 Sum_probs=52.3
Q ss_pred cchhhHHHHHHhhCCCCCC-CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccC
Q 010111 51 LFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (518)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~-~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 129 (518)
.|.-|.+++..+...+..+ +-+++.|.=|=|||.+.-+.+.. +.... ...+++|.+|+.+-++.+.+.+.+-++..|
T Consensus 212 ~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~-~~~~~-~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg 289 (758)
T COG1444 212 LTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAA-AARLA-GSVRIIVTAPTPANVQTLFEFAGKGLEFLG 289 (758)
T ss_pred cChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHH-HHHhc-CCceEEEeCCCHHHHHHHHHHHHHhHHHhC
Confidence 4455555544333222223 36788999999999988876633 22221 145899999999988888888777666666
Q ss_pred ce
Q 010111 130 LS 131 (518)
Q Consensus 130 ~~ 131 (518)
.+
T Consensus 290 ~~ 291 (758)
T COG1444 290 YK 291 (758)
T ss_pred Cc
Confidence 54
No 246
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.72 E-value=0.044 Score=47.38 Aligned_cols=104 Identities=20% Similarity=0.237 Sum_probs=60.1
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCc-eEEEeecCCchHHHHHH
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL-SVGLAVGQSSIADEISE 147 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~-~v~~~~g~~~~~~~~~~ 147 (518)
+.=.++.+|.+||||.. +++++.+-...+.++++..|...-- + +. .+..-.|-
T Consensus 4 g~l~~i~gpM~SGKT~e----Ll~r~~~~~~~g~~v~vfkp~iD~R---------~----~~~~V~Sr~G~--------- 57 (201)
T COG1435 4 GWLEFIYGPMFSGKTEE----LLRRARRYKEAGMKVLVFKPAIDTR---------Y----GVGKVSSRIGL--------- 57 (201)
T ss_pred EEEEEEEccCcCcchHH----HHHHHHHHHHcCCeEEEEecccccc---------c----ccceeeeccCC---------
Confidence 34468999999999986 4444444344566899998874311 0 11 11111111
Q ss_pred hhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHh
Q 010111 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224 (518)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~ 224 (518)
...-++|-.+..+.+.+..... ....++|.+|||+-+ +...-..+..+...
T Consensus 58 -----------------------~~~A~~i~~~~~i~~~i~~~~~--~~~~~~v~IDEaQF~-~~~~v~~l~~lad~ 108 (201)
T COG1435 58 -----------------------SSEAVVIPSDTDIFDEIAALHE--KPPVDCVLIDEAQFF-DEELVYVLNELADR 108 (201)
T ss_pred -----------------------cccceecCChHHHHHHHHhccc--CCCcCEEEEehhHhC-CHHHHHHHHHHHhh
Confidence 1235667777777777765321 112789999999944 44444444444443
No 247
>PRK08727 hypothetical protein; Validated
Probab=95.71 E-value=0.057 Score=49.54 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=22.4
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~ 108 (518)
..+++.||+|+|||-.... +...+.+. +.+++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a-~~~~~~~~---~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALA-LCAAAEQA---GRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHc---CCcEEEEe
Confidence 4589999999999965443 33333332 34677764
No 248
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.67 E-value=0.05 Score=58.30 Aligned_cols=81 Identities=12% Similarity=0.228 Sum_probs=68.5
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc-cccCCCCCCCCEEE
Q 010111 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVV 408 (518)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~GiDip~v~~VI 408 (518)
.+.+++|.+||+.-|...++.++... ..++++..+||+++..+|..+++.+.+|+++|+|+|.. +...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 45689999999999999988887653 33589999999999999999999999999999999975 45567888899888
Q ss_pred EcC
Q 010111 409 NYD 411 (518)
Q Consensus 409 ~~~ 411 (518)
.-.
T Consensus 389 IDE 391 (681)
T PRK10917 389 IDE 391 (681)
T ss_pred Eec
Confidence 643
No 249
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.58 E-value=0.078 Score=53.21 Aligned_cols=37 Identities=22% Similarity=0.168 Sum_probs=24.2
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~ 108 (518)
..+++.||+|+|||.... .+.+.+... ..+.+++++.
T Consensus 137 n~l~l~G~~G~GKThL~~-ai~~~l~~~-~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLH-AIGNEILEN-NPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHh-CCCCcEEEEE
Confidence 457899999999998643 344444432 2345677774
No 250
>PRK06893 DNA replication initiation factor; Validated
Probab=95.58 E-value=0.073 Score=48.67 Aligned_cols=36 Identities=14% Similarity=-0.057 Sum_probs=21.8
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcC
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~P 109 (518)
..+++.||+|+|||......+ +.+... +.+++|+.-
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~-~~~~~~---~~~~~y~~~ 75 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVS-NHYLLN---QRTAIYIPL 75 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHH-HHHHHc---CCCeEEeeH
Confidence 457899999999997544433 333322 235666543
No 251
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.55 E-value=0.095 Score=53.03 Aligned_cols=50 Identities=18% Similarity=0.210 Sum_probs=30.6
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHH
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~ 122 (518)
..+++.|++|+|||... -++.+.+... .++.+++++.+ .++..++...+.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~-~~~~~v~yv~~-~~f~~~~~~~l~ 191 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN-FSDLKVSYMSG-DEFARKAVDILQ 191 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh-CCCCeEEEEEH-HHHHHHHHHHHH
Confidence 45889999999999643 3344444432 23456777665 456555554443
No 252
>PRK05642 DNA replication initiation factor; Validated
Probab=95.52 E-value=0.087 Score=48.33 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=22.6
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcC
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~P 109 (518)
..+++.||+|+|||-... ++.+.+... +.+++|+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~-a~~~~~~~~---~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQ-AACLRFEQR---GEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHhC---CCcEEEeeH
Confidence 567899999999997533 233333322 346776653
No 253
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.52 E-value=0.17 Score=52.54 Aligned_cols=71 Identities=13% Similarity=0.096 Sum_probs=48.7
Q ss_pred chhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcc
Q 010111 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (518)
Q Consensus 52 ~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 126 (518)
.|.=.+-++.++..+ ..+-.++.+|=|.|||.+..+.+...+.. .+.+++|.+|...-+.++.+.+..++.
T Consensus 171 ~~~~~~~id~~~~~f-kq~~tV~taPRqrGKS~iVgi~l~~La~f---~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 171 SPRTLREIDRIFDEY-GKCYTAATVPRRCGKTTIMAIILAAMISF---LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred ChhhHHHHHHHHHHH-hhcceEEEeccCCCcHHHHHHHHHHHHHh---cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 444444445555433 24566788999999998766554433321 246899999999999998888877765
No 254
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=95.51 E-value=0.13 Score=51.74 Aligned_cols=77 Identities=18% Similarity=0.103 Sum_probs=55.6
Q ss_pred ccchhhHHHHHHhhCCCCCC------CCEEEECCCCchHHHHhH-HHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHH
Q 010111 50 SLFPVQVAVWQETIGPGLFE------RDLCINSPTGSGKTLSYA-LPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~------~~~li~apTGsGKT~~~~-l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~ 122 (518)
.+-|||.-.+-.++.....+ +..+|..|-+-|||..+. +.+...+... ..+....|++|+.+-+.+.+..++
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-~~~~~~~i~A~s~~qa~~~F~~ar 139 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-RSGAGIYILAPSVEQAANSFNPAR 139 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-hcCCcEEEEeccHHHHHHhhHHHH
Confidence 67799999887776332222 356899999999997554 4334444443 456789999999999999888888
Q ss_pred Hhccc
Q 010111 123 AIAPA 127 (518)
Q Consensus 123 ~~~~~ 127 (518)
..+..
T Consensus 140 ~mv~~ 144 (546)
T COG4626 140 DMVKR 144 (546)
T ss_pred HHHHh
Confidence 77654
No 255
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.48 E-value=0.039 Score=52.91 Aligned_cols=67 Identities=19% Similarity=0.223 Sum_probs=43.2
Q ss_pred HHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHH
Q 010111 40 KVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (518)
Q Consensus 40 ~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~L 113 (518)
++.+.+.|+ +++.|.+.+..++. .+++++|+|+||||||.. +-.++..+... .+..+++++-.+.|+
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~---~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~-~~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVR---AHRNILVIGGTGSGKTTL-VNAIINEMVIQ-DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHH-HHHHHHhhhhc-CCCceEEEEcCCCcc
Confidence 344445564 55677777665554 578999999999999954 44455443221 123477888777776
No 256
>PRK08116 hypothetical protein; Validated
Probab=95.41 E-value=0.14 Score=48.05 Aligned_cols=45 Identities=24% Similarity=0.286 Sum_probs=28.2
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHH
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~ 119 (518)
..+++.|++|+|||..+.. +.+.+... +..++++ +..++..++..
T Consensus 115 ~gl~l~G~~GtGKThLa~a-ia~~l~~~---~~~v~~~-~~~~ll~~i~~ 159 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAAC-IANELIEK---GVPVIFV-NFPQLLNRIKS 159 (268)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHHc---CCeEEEE-EHHHHHHHHHH
Confidence 4599999999999986543 55555543 2345444 45555554443
No 257
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.37 E-value=0.088 Score=54.15 Aligned_cols=92 Identities=8% Similarity=0.093 Sum_probs=70.4
Q ss_pred CCcHHHHHHHHHh--cCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc
Q 010111 317 KLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (518)
Q Consensus 317 ~~k~~~l~~~l~~--~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 394 (518)
..|.......+.. ..++++||.+|++..+..+++.|++.. +..+..+||+++..+|.+.+.+..+|+.+|+|+|..
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f--~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrs 85 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRF--GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRS 85 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh--CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChH
Confidence 3455544443332 236689999999999999999998642 367889999999999999999999999999999976
Q ss_pred cccCCCCCCCCEEEEcC
Q 010111 395 MTRGMDVEGVNNVVNYD 411 (518)
Q Consensus 395 ~~~GiDip~v~~VI~~~ 411 (518)
+-. ..++++.+||..+
T Consensus 86 alf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 86 ALF-LPFKNLGLIIVDE 101 (505)
T ss_pred HHc-CcccCCCEEEEEC
Confidence 433 3466788888655
No 258
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.30 E-value=0.14 Score=47.09 Aligned_cols=37 Identities=19% Similarity=0.099 Sum_probs=23.1
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcC
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~P 109 (518)
+..+++.||+|+|||..... +.+.+.. .+.+++|+.-
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a-~~~~~~~---~~~~v~y~~~ 81 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHA-ACAELSQ---RGRAVGYVPL 81 (235)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHh---CCCeEEEEEH
Confidence 46789999999999975443 2333332 2345666543
No 259
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.26 E-value=0.1 Score=55.77 Aligned_cols=92 Identities=7% Similarity=0.082 Sum_probs=70.7
Q ss_pred CCcHHHHHHHHHh--cCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc
Q 010111 317 KLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (518)
Q Consensus 317 ~~k~~~l~~~l~~--~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 394 (518)
..|.......+.. ..+.++||.++++..+..+.+.|++.. +..+..+||+++..+|.+.+.+...|+.+|+|+|..
T Consensus 173 SGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~f--g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrs 250 (679)
T PRK05580 173 SGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARF--GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARS 250 (679)
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh--CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccH
Confidence 4555544433321 235689999999999999999998642 368999999999999999999999999999999975
Q ss_pred cccCCCCCCCCEEEEcC
Q 010111 395 MTRGMDVEGVNNVVNYD 411 (518)
Q Consensus 395 ~~~GiDip~v~~VI~~~ 411 (518)
... ..+.++.+||..+
T Consensus 251 al~-~p~~~l~liVvDE 266 (679)
T PRK05580 251 ALF-LPFKNLGLIIVDE 266 (679)
T ss_pred Hhc-ccccCCCEEEEEC
Confidence 432 4566788887665
No 260
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.25 E-value=0.064 Score=47.53 Aligned_cols=19 Identities=42% Similarity=0.616 Sum_probs=16.4
Q ss_pred CCEEEECCCCchHHHHhHH
Q 010111 70 RDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l 88 (518)
.++++.+|+|+|||.+...
T Consensus 49 P~liisGpPG~GKTTsi~~ 67 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILC 67 (333)
T ss_pred CceEeeCCCCCchhhHHHH
Confidence 5899999999999998554
No 261
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.074 Score=52.06 Aligned_cols=45 Identities=22% Similarity=0.409 Sum_probs=27.0
Q ss_pred chhhHHHHHHhhCCCCCC---CCEEEECCCCchHHHHhHHHHHHHhhhc
Q 010111 52 FPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIVQTLSNR 97 (518)
Q Consensus 52 ~~~Q~~a~~~~~~~~~~~---~~~li~apTGsGKT~~~~l~~~~~l~~~ 97 (518)
++-|.+.+..++..+..| .|+++.|+||+|||.+.-. +++.+...
T Consensus 22 Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~-v~~~l~~~ 69 (366)
T COG1474 22 REEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKF-VMEELEES 69 (366)
T ss_pred cHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHH-HHHHHHhh
Confidence 344444443333333222 5799999999999987444 45555443
No 262
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.21 E-value=0.13 Score=46.93 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=17.3
Q ss_pred CCCCEEEECCCCchHHHHhHH
Q 010111 68 FERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l 88 (518)
.+..+++.||+|+|||..+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 357899999999999986544
No 263
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.19 E-value=0.076 Score=50.70 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=27.5
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHH
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~ 118 (518)
++++++.||+|+|||..+.. +...+.+. +..++++. .-+++.++.
T Consensus 156 ~~gl~L~G~~G~GKThLa~A-ia~~l~~~---g~~v~~~~-~~~l~~~lk 200 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAA-IANELAKK---GVSSTLLH-FPEFIRELK 200 (306)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHc---CCCEEEEE-HHHHHHHHH
Confidence 57899999999999986544 44444432 33455553 224544443
No 264
>CHL00181 cbbX CbbX; Provisional
Probab=95.16 E-value=0.15 Score=48.23 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=17.4
Q ss_pred CCCEEEECCCCchHHHHhHHH
Q 010111 69 ERDLCINSPTGSGKTLSYALP 89 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~ 89 (518)
+.++++.||+|+|||.++-..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 557899999999999876653
No 265
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.15 E-value=0.16 Score=59.13 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=45.3
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhc-ccCCccEEEEcCcHHHHHHHH
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPTRDLALQVK 118 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~-~~~~~~~lil~Pt~~La~Q~~ 118 (518)
.+++.|.+|+..++.. .++-++|.+..|+|||.+. -.++..+... ...+.+++.++||-.-+.++.
T Consensus 967 ~Lt~~Q~~Av~~il~s--~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 967 GLTSGQRAATRMILES--TDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHHHH
Confidence 7999999998887741 1357789999999999863 2333333221 123457889999987666543
No 266
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.14 E-value=0.14 Score=54.17 Aligned_cols=95 Identities=17% Similarity=0.108 Sum_probs=76.2
Q ss_pred CCCcHHHHHHHHHhc--CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcC
Q 010111 316 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393 (518)
Q Consensus 316 ~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~ 393 (518)
-..|.+....++... .++++||.++.+..+..+.+.|+.... +..+..+|++++..+|.+.+.+..+|+.+|+|.|-
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~-~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtR 248 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLG-AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTR 248 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 357777777777543 467899999999999999999987532 25689999999999999999999999999999998
Q ss_pred ccccCCCCCCCCEEEEcCC
Q 010111 394 AMTRGMDVEGVNNVVNYDK 412 (518)
Q Consensus 394 ~~~~GiDip~v~~VI~~~~ 412 (518)
.+.. .-+++...||..+-
T Consensus 249 SAvF-aP~~~LgLIIvdEE 266 (665)
T PRK14873 249 SAVF-APVEDLGLVAIWDD 266 (665)
T ss_pred eeEE-eccCCCCEEEEEcC
Confidence 7543 34557777776553
No 267
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.12 E-value=0.097 Score=48.95 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=14.6
Q ss_pred CCEEEECCCCchHHHH
Q 010111 70 RDLCINSPTGSGKTLS 85 (518)
Q Consensus 70 ~~~li~apTGsGKT~~ 85 (518)
.+++++|+||.|||..
T Consensus 62 p~lLivG~snnGKT~I 77 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI 77 (302)
T ss_pred CceEEecCCCCcHHHH
Confidence 5899999999999984
No 268
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.11 E-value=0.13 Score=59.09 Aligned_cols=65 Identities=20% Similarity=0.203 Sum_probs=45.3
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhH--HHHHHHhhhcccCCccEEEEcCcHHHHHHHH
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA--LPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~--l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~ 118 (518)
.+++.|.+|+..++.. .++-++|.+..|+|||.+.- +.++..+.. ..+..++.++||-.-+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts--~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e--~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILET--SDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE--SERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhC--CCceEEEEeCCCCCHHHHHHHHHHHHHHHhh--ccCceEEEEechHHHHHHHH
Confidence 7999999998877641 24678899999999998632 222332222 23557889999987666553
No 269
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.11 E-value=0.065 Score=50.14 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=16.6
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 010111 69 ERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l 88 (518)
..++++.||+|||||..+-+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred cceEEEEcCCCCCHHHHHHH
Confidence 36789999999999987544
No 270
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.10 E-value=0.24 Score=51.46 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=27.5
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHH
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~ 119 (518)
..++|.|++|+|||.... .+.+.+... ..+.+++|+. ..+++.+...
T Consensus 315 NpL~LyG~sGsGKTHLL~-AIa~~a~~~-~~g~~V~Yit-aeef~~el~~ 361 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLH-AIGHYARRL-YPGTRVRYVS-SEEFTNEFIN 361 (617)
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHHHHh-CCCCeEEEee-HHHHHHHHHH
Confidence 348899999999997533 233433331 1344666665 4455554433
No 271
>PRK09183 transposase/IS protein; Provisional
Probab=95.09 E-value=0.12 Score=48.19 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=44.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCC
Q 010111 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (518)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~ 101 (518)
.++++..++..++++...+..|....| +..+.++++.||+|+|||..+......... .+
T Consensus 72 ~~l~~fd~~~~~~~~~~~i~~L~~~~~-----------------i~~~~~v~l~Gp~GtGKThLa~al~~~a~~----~G 130 (259)
T PRK09183 72 KTFEEYDFTFATGAPQKQLQSLRSLSF-----------------IERNENIVLLGPSGVGKTHLAIALGYEAVR----AG 130 (259)
T ss_pred CcHhhcccccCCCCCHHHHHHHhcCCc-----------------hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH----cC
Confidence 345556555555677766666554332 124789999999999999765544333222 23
Q ss_pred ccEEEEcCcHHHHHHH
Q 010111 102 LRALVVLPTRDLALQV 117 (518)
Q Consensus 102 ~~~lil~Pt~~La~Q~ 117 (518)
.+++++. ..+|..++
T Consensus 131 ~~v~~~~-~~~l~~~l 145 (259)
T PRK09183 131 IKVRFTT-AADLLLQL 145 (259)
T ss_pred CeEEEEe-HHHHHHHH
Confidence 4566654 44555444
No 272
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.08 E-value=0.097 Score=55.67 Aligned_cols=81 Identities=14% Similarity=0.229 Sum_probs=68.3
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCcc-ccCCCCCCCCEEE
Q 010111 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM-TRGMDVEGVNNVV 408 (518)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~-~~GiDip~v~~VI 408 (518)
.+.++++.+|++.-|...++.+.... ..++++..+||+++..+|..+++...+|+.+|+|+|..+ ...+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 45689999999999999988887653 336899999999999999999999999999999999764 4567788888887
Q ss_pred EcC
Q 010111 409 NYD 411 (518)
Q Consensus 409 ~~~ 411 (518)
.-.
T Consensus 363 IDE 365 (630)
T TIGR00643 363 IDE 365 (630)
T ss_pred Eec
Confidence 544
No 273
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.04 E-value=0.084 Score=47.12 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=15.3
Q ss_pred CCEEEECCCCchHHHHhHH
Q 010111 70 RDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l 88 (518)
.++++.||+|+|||..+.+
T Consensus 51 ~h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp -EEEEESSTTSSHHHHHHH
T ss_pred ceEEEECCCccchhHHHHH
Confidence 4789999999999986544
No 274
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.02 E-value=0.087 Score=56.50 Aligned_cols=73 Identities=12% Similarity=0.326 Sum_probs=58.4
Q ss_pred HHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcC----CCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCcc
Q 010111 322 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG----ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395 (518)
Q Consensus 322 ~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~----~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 395 (518)
.+..+.-...++++++.+||..-+...++.|..+. .....+. +||.++..++++++++|.+|+.+|||+|+.+
T Consensus 115 ~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 115 LLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 44455555557899999999999988888887653 1223334 9999999999999999999999999999864
No 275
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.02 E-value=0.041 Score=55.72 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=17.1
Q ss_pred CCEEEECCCCchHHHHhHHHH
Q 010111 70 RDLCINSPTGSGKTLSYALPI 90 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~ 90 (518)
+..|+.||.|+|||.++.+.+
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilA 56 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIIS 56 (491)
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 578999999999998766543
No 276
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.92 E-value=0.084 Score=50.53 Aligned_cols=65 Identities=23% Similarity=0.269 Sum_probs=42.3
Q ss_pred HHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHH
Q 010111 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (518)
Q Consensus 43 l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La 114 (518)
+...|. +++.|.+.+..++. .+.+++|+|+||||||.. +-.++..+.... +..+++.+=.+.||.
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~---~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~-~~~rivtiEd~~El~ 187 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAID---SRLNIVISGGTGSGKTTL-ANAVIAEIVASA-PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHH-HHHHHHHHhcCC-CCceEEEecCCcccc
Confidence 334453 56778777665554 578999999999999975 333555443221 234677777777763
No 277
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.85 E-value=0.067 Score=54.63 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=17.2
Q ss_pred CCEEEECCCCchHHHHhHHHH
Q 010111 70 RDLCINSPTGSGKTLSYALPI 90 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~ 90 (518)
+.+++.||.|+|||.++.+.+
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999998766543
No 278
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=94.84 E-value=0.014 Score=65.99 Aligned_cols=96 Identities=23% Similarity=0.383 Sum_probs=78.2
Q ss_pred CcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCC-----------hHHHHHHHHHHhcCCceEEEEcCccccCCCC
Q 010111 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR-----------QSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401 (518)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~-----------~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDi 401 (518)
-..|+|++.+..+....+.+.+... ..+..+.|.+. ...+.+++..|....+++|++|.++.+|+|+
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~ 370 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFS--NDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDV 370 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhc--cCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcch
Confidence 3679999999999999998876532 22222444332 2236788999999999999999999999999
Q ss_pred CCCCEEEEcCCCCCccchhhhhhhcccCC
Q 010111 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAG 430 (518)
Q Consensus 402 p~v~~VI~~~~p~s~~~~~Qr~GR~gR~g 430 (518)
+.++.|+.++.|.....|+|..||+-+.+
T Consensus 371 ~~~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 371 PKCNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhhhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999999987754
No 279
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.77 E-value=0.14 Score=48.21 Aligned_cols=41 Identities=15% Similarity=0.050 Sum_probs=27.8
Q ss_pred CCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc
Q 010111 65 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (518)
Q Consensus 65 ~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~ 108 (518)
.+..|.-+++.|++|+|||....-.+.+.+.. .+.+++|++
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~---~g~~vl~iS 66 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQ---HGVRVGTIS 66 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh---cCceEEEEE
Confidence 34457888999999999998655444443333 144688876
No 280
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.73 E-value=0.14 Score=45.44 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=32.8
Q ss_pred CEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc-C-cHHHHHHHHHHHHHhccccCceEEEee
Q 010111 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL-P-TRDLALQVKDVFAAIAPAVGLSVGLAV 136 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~-P-t~~La~Q~~~~~~~~~~~~~~~v~~~~ 136 (518)
-+++++|||+|||.+..--+... ... +.++.+++ - .|.= -.++++.+++.+++++....
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~-~~~---~~~v~lis~D~~R~g---a~eQL~~~a~~l~vp~~~~~ 63 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARL-KLK---GKKVALISADTYRIG---AVEQLKTYAEILGVPFYVAR 63 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-HHT---T--EEEEEESTSSTH---HHHHHHHHHHHHTEEEEESS
T ss_pred EEEEECCCCCchHhHHHHHHHHH-hhc---cccceeecCCCCCcc---HHHHHHHHHHHhccccchhh
Confidence 36789999999998855433333 222 23444444 2 3322 34455666655677665544
No 281
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.73 E-value=0.096 Score=52.41 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=23.1
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEE
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil 107 (518)
..+++|.||+|+|||.+.-. ++..+.... ....++++
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~-v~~~l~~~~-~~~~~v~i 91 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKK-VFEELEEIA-VKVVYVYI 91 (394)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHhc-CCcEEEEE
Confidence 36799999999999986333 444443321 23344554
No 282
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.72 E-value=0.21 Score=50.47 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=24.7
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcC
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~P 109 (518)
..+++.||+|+|||..+. ++.+.+... .++.+++|+..
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~-~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQN-EPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHh-CCCCeEEEEEH
Confidence 468999999999997643 344444432 23446777754
No 283
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.70 E-value=0.15 Score=43.65 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=16.8
Q ss_pred CCEEEECCCCchHHHHhHHHHH
Q 010111 70 RDLCINSPTGSGKTLSYALPIV 91 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~ 91 (518)
...|+.||.|+||+..+..-+-
T Consensus 20 ha~L~~G~~g~gk~~~a~~~a~ 41 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLALAFAR 41 (162)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEECCCCCCHHHHHHHHHH
Confidence 4579999999999987554333
No 284
>PLN03025 replication factor C subunit; Provisional
Probab=94.69 E-value=0.17 Score=48.86 Aligned_cols=19 Identities=37% Similarity=0.601 Sum_probs=15.8
Q ss_pred CCEEEECCCCchHHHHhHH
Q 010111 70 RDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l 88 (518)
.++++.||+|+|||..+..
T Consensus 35 ~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILA 53 (319)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999976544
No 285
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.68 E-value=0.17 Score=48.61 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=30.8
Q ss_pred cchhhHHHHHHhhCCCCCC---CCEEEECCCCchHHHHhHHHH
Q 010111 51 LFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPI 90 (518)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~---~~~li~apTGsGKT~~~~l~~ 90 (518)
++|||..+|..+...+..| +-.++.||.|.||+..+..-+
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A 45 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALA 45 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHH
Confidence 5799999998877665554 467899999999998755433
No 286
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.63 E-value=0.075 Score=55.72 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.1
Q ss_pred EEEECCCCchHHHHhHHH
Q 010111 72 LCINSPTGSGKTLSYALP 89 (518)
Q Consensus 72 ~li~apTGsGKT~~~~l~ 89 (518)
.|+.||.|+|||.++.+.
T Consensus 41 yLf~Gp~GvGKTTlAr~l 58 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLL 58 (647)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999876553
No 287
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.62 E-value=0.64 Score=42.48 Aligned_cols=52 Identities=12% Similarity=0.017 Sum_probs=33.1
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
.|.-+++.+++|+|||..+.-.+...+.+ +.++++++.. +-..+..+.+..+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~----g~~~~yi~~e-~~~~~~~~~~~~~ 74 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQN----GYSVSYVSTQ-LTTTEFIKQMMSL 74 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhC----CCcEEEEeCC-CCHHHHHHHHHHh
Confidence 57788999999999998754444443332 3467888743 3344555555544
No 288
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.61 E-value=0.13 Score=49.01 Aligned_cols=68 Identities=22% Similarity=0.269 Sum_probs=42.9
Q ss_pred HHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHH
Q 010111 40 KVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (518)
Q Consensus 40 ~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La 114 (518)
++.+.+.| .+++-|.+.+..++. .+++++|+|+||||||.. +-.++..+... .+..+++++=.+.|+.
T Consensus 108 l~~l~~~g--~~~~~~~~~L~~~v~---~~~~ilI~G~tGSGKTTl-l~al~~~i~~~-~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 108 LDDYVEAG--IMTAAQRDVLREAVL---ARKNILVVGGTGSGKTTL-ANALLAEIAKN-DPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHH-HHHHHHHhhcc-CCCceEEEECCchhhc
Confidence 33444445 355556666555543 478999999999999975 33344444331 1234788888887773
No 289
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.53 E-value=0.12 Score=54.44 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=15.4
Q ss_pred CCEEEECCCCchHHHHhHH
Q 010111 70 RDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l 88 (518)
+-+|+.+|.|+|||.++.+
T Consensus 39 HAyLFtGPpGvGKTTlAri 57 (830)
T PRK07003 39 HAYLFTGTRGVGKTTLSRI 57 (830)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3468999999999987554
No 290
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.48 E-value=0.061 Score=50.86 Aligned_cols=63 Identities=22% Similarity=0.295 Sum_probs=43.8
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHH
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q 116 (518)
..|..+++-|.+.+..+.. ...|+++++.||||||.. ++.+..-....-+++.+=-|.||.-+
T Consensus 153 i~~gt~~~~~a~~L~~av~---~r~NILisGGTGSGKTTl-----LNal~~~i~~~eRvItiEDtaELql~ 215 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVG---IRCNILISGGTGSGKTTL-----LNALSGFIDSDERVITIEDTAELQLA 215 (355)
T ss_pred HHcCCcCHHHHHHHHHHHh---hceeEEEeCCCCCCHHHH-----HHHHHhcCCCcccEEEEeehhhhccC
Confidence 3467899999888766664 346999999999999974 22222222233389998888888443
No 291
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.47 E-value=0.16 Score=51.41 Aligned_cols=61 Identities=16% Similarity=0.064 Sum_probs=37.5
Q ss_pred HHHhhC-CCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 59 ~~~~~~-~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
++.++. -+..|.-+++.+++|+|||...+-.+.+.. . .+.+++|+.- .+-..|+.....++
T Consensus 69 LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~---~g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 69 LDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA-A---AGGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred HHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH-h---cCCeEEEEEc-cccHHHHHHHHHHc
Confidence 344443 344567789999999999986444333322 2 2347888874 34556666665554
No 292
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.47 E-value=0.15 Score=51.84 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=15.6
Q ss_pred CCEEEECCCCchHHHHhHH
Q 010111 70 RDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l 88 (518)
..+++.||+|+|||..+.+
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARI 55 (472)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3479999999999987554
No 293
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.45 E-value=0.21 Score=50.68 Aligned_cols=91 Identities=20% Similarity=0.161 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHhCCCCccch----hhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhc--ccCCccEEEE
Q 010111 34 CLDPRLKVALQNMGISSLFP----VQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVV 107 (518)
Q Consensus 34 ~l~~~~~~~l~~~g~~~~~~----~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~--~~~~~~~lil 107 (518)
|-++-+..+|.+.-=.+++. +|.+-= .|+. ...++-++|+|..|||||.+++--+.-.++.. ......+||+
T Consensus 189 ~~dEvL~~~Lek~ss~~mrdIV~TIQkEQn-eIIR-~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl 266 (747)
T COG3973 189 GRDEVLQRVLEKNSSAKMRDIVETIQKEQN-EIIR-FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVL 266 (747)
T ss_pred hHHHHHHHHHHhccchhHHHHHHHhhHhHH-HHHh-ccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEE
Confidence 44556667777643333332 344431 2221 12356788999999999998775554444432 1223359999
Q ss_pred cCcHHHHHHHHHHHHHhcc
Q 010111 108 LPTRDLALQVKDVFAAIAP 126 (518)
Q Consensus 108 ~Pt~~La~Q~~~~~~~~~~ 126 (518)
.|.+-...=+.+.+-.++.
T Consensus 267 ~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 267 GPNRVFLEYISRVLPELGE 285 (747)
T ss_pred cCcHHHHHHHHHhchhhcc
Confidence 9999988877777776643
No 294
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.42 E-value=0.21 Score=53.27 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=33.6
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc-CcHHHHHHHHHHHHHhccccCceEEEee
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL-PTRDLALQVKDVFAAIAPAVGLSVGLAV 136 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~-Pt~~La~Q~~~~~~~~~~~~~~~v~~~~ 136 (518)
++-+.+.+|||+|||.++..-+....... ...++.+++ .+--.+ ..+.++.++...++.+....
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~--G~kkV~lit~Dt~Rig--A~eQL~~~a~~~gvpv~~~~ 249 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVARE--GADQLALLTTDSFRIG--ALEQLRIYGRILGVPVHAVK 249 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHc--CCCeEEEecCcccchH--HHHHHHHHHHhCCCCccccC
Confidence 45578999999999987554333222221 112444443 222111 23455555555566554433
No 295
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.39 E-value=0.19 Score=48.73 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=30.9
Q ss_pred ccchhhHHHHHHhhCCCCCC---CCEEEECCCCchHHHHhHH
Q 010111 50 SLFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~---~~~li~apTGsGKT~~~~l 88 (518)
.++|||..+|..+...+..| .-.++.||.|+||+..+..
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~ 43 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHH
Confidence 46899999999887665554 4678999999999987554
No 296
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.38 E-value=0.21 Score=50.39 Aligned_cols=42 Identities=24% Similarity=0.262 Sum_probs=26.3
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHH
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q 116 (518)
..+++.||+|+|||.... ++.+.+... +.+++++.. ..+..+
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~---~~~v~yi~~-~~f~~~ 183 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRES---GGKILYVRS-ELFTEH 183 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHc---CCCEEEeeH-HHHHHH
Confidence 458999999999997543 344444432 346777653 344443
No 297
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.37 E-value=0.14 Score=51.02 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=20.6
Q ss_pred hhCCCCCCCCEEEECCCCchHHHHhH
Q 010111 62 TIGPGLFERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 62 ~~~~~~~~~~~li~apTGsGKT~~~~ 87 (518)
++..+..++++++.+|+|+|||..+.
T Consensus 187 l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 187 ILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred HHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 34444568999999999999998754
No 298
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.37 E-value=0.037 Score=54.49 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.0
Q ss_pred CEEEECCCCchHHHHhHH
Q 010111 71 DLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~l 88 (518)
.+++.||.|+|||..+..
T Consensus 40 ~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 468999999999987554
No 299
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.37 E-value=0.11 Score=50.18 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=29.4
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHH
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~ 118 (518)
.+.++++.||||+|||..+.. +...+... +..++++ +..+|..++.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~a-Ia~~l~~~---g~~V~y~-t~~~l~~~l~ 227 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNC-IAKELLDR---GKSVIYR-TADELIEILR 227 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHH-HHHHHHHC---CCeEEEE-EHHHHHHHHH
Confidence 358899999999999986444 44444432 3356555 4556655544
No 300
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.36 E-value=0.069 Score=50.24 Aligned_cols=38 Identities=13% Similarity=-0.160 Sum_probs=23.6
Q ss_pred ccchhhHHHHHHhhCCCCCC-CCEEEECCCCchHHHHhH
Q 010111 50 SLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~-~~~li~apTGsGKT~~~~ 87 (518)
.+++.+.+++..+...+..+ ..+++.||+|+|||..+-
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 45555555654433222233 358899999999998644
No 301
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.36 E-value=0.11 Score=51.80 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=16.3
Q ss_pred CCEEEECCCCchHHHHhHHH
Q 010111 70 RDLCINSPTGSGKTLSYALP 89 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~ 89 (518)
+.+|+.||.|+|||.++.+.
T Consensus 39 ha~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred eeEEEECCCCCCHHHHHHHH
Confidence 34789999999999876653
No 302
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.31 E-value=0.25 Score=54.53 Aligned_cols=81 Identities=11% Similarity=0.258 Sum_probs=67.7
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhc-CCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc-cccCCCCCCCCEEE
Q 010111 331 GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVV 408 (518)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~-~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~GiDip~v~~VI 408 (518)
.+.+++|.+||+.-|...++.+... ...++.+..++|..+..++..+++.+++|+++|+|+|.. +...+.+.++.+||
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 4578999999999999999988763 334578889999999999999999999999999999974 45567888888888
Q ss_pred EcC
Q 010111 409 NYD 411 (518)
Q Consensus 409 ~~~ 411 (518)
.-.
T Consensus 579 IDE 581 (926)
T TIGR00580 579 IDE 581 (926)
T ss_pred eec
Confidence 644
No 303
>PRK10867 signal recognition particle protein; Provisional
Probab=94.29 E-value=0.47 Score=47.48 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=32.3
Q ss_pred CEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc--CcHHHHHHHHHHHHHhccccCceEEEe
Q 010111 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSVGLA 135 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~--Pt~~La~Q~~~~~~~~~~~~~~~v~~~ 135 (518)
-+++++++|+|||.++.--+. ++... .+.++++++ +.|.-+. +.++.++...++.+...
T Consensus 102 vI~~vG~~GsGKTTtaakLA~-~l~~~--~G~kV~lV~~D~~R~aa~---eQL~~~a~~~gv~v~~~ 162 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAK-YLKKK--KKKKVLLVAADVYRPAAI---EQLKTLGEQIGVPVFPS 162 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHH-HHHHh--cCCcEEEEEccccchHHH---HHHHHHHhhcCCeEEec
Confidence 467899999999987554443 23322 133555553 3444433 23344444456665443
No 304
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=94.28 E-value=0.14 Score=51.29 Aligned_cols=58 Identities=19% Similarity=0.230 Sum_probs=41.9
Q ss_pred EEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHH-HHHHHHHHHHHhccccCc
Q 010111 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD-LALQVKDVFAAIAPAVGL 130 (518)
Q Consensus 72 ~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~-La~Q~~~~~~~~~~~~~~ 130 (518)
.++.+..|||||.+..+-++..+... .++.+++++-|+.. |..-+...+.......++
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~-~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~ 62 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAIN-KKQQNILAARKVQNSIRDSVFKDIENLLSIEGI 62 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhc-CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCC
Confidence 57899999999999888888776664 13467899988877 555566777665554444
No 305
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.21 E-value=0.1 Score=54.24 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=16.2
Q ss_pred CCEEEECCCCchHHHHhHHH
Q 010111 70 RDLCINSPTGSGKTLSYALP 89 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~ 89 (518)
+-+|+.||.|+|||.++.+.
T Consensus 38 HAyLF~GPpGvGKTTlAriL 57 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARIL 57 (702)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45699999999999876553
No 306
>PRK05973 replicative DNA helicase; Provisional
Probab=94.20 E-value=0.16 Score=46.36 Aligned_cols=85 Identities=18% Similarity=0.097 Sum_probs=52.0
Q ss_pred CCHHHHHHHHhCCCCccchhhHHHH-----HHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcC
Q 010111 35 LDPRLKVALQNMGISSLFPVQVAVW-----QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (518)
Q Consensus 35 l~~~~~~~l~~~g~~~~~~~Q~~a~-----~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~P 109 (518)
++..+-..-.+-||.........+- ..+...+..|.-++|.|++|+|||..++--+.+.+.+ +.+++|++-
T Consensus 25 ~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~----Ge~vlyfSl 100 (237)
T PRK05973 25 LHEALDRIAAEEGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS----GRTGVFFTL 100 (237)
T ss_pred HHHHHHHHHHHhccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc----CCeEEEEEE
Confidence 5555555556668875544443331 1234455567888999999999998766555554433 336777753
Q ss_pred cHHHHHHHHHHHHHh
Q 010111 110 TRDLALQVKDVFAAI 124 (518)
Q Consensus 110 t~~La~Q~~~~~~~~ 124 (518)
- +-..|+.+.+..+
T Consensus 101 E-es~~~i~~R~~s~ 114 (237)
T PRK05973 101 E-YTEQDVRDRLRAL 114 (237)
T ss_pred e-CCHHHHHHHHHHc
Confidence 3 3345666666655
No 307
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=94.15 E-value=0.019 Score=59.31 Aligned_cols=81 Identities=21% Similarity=0.315 Sum_probs=59.2
Q ss_pred HHHHHHhcCCceEEEEcCccccCCCCCCCC--------EEEEcCCCCCccchhhhhhhcccCCCC-CcEEEEe-e--cch
Q 010111 376 KTLKAFREGKIQVLVSSDAMTRGMDVEGVN--------NVVNYDKPAYIKTYIHRAGRTARAGQL-GRCFTLL-H--KDE 443 (518)
Q Consensus 376 ~~~~~f~~g~~~vLvaT~~~~~GiDip~v~--------~VI~~~~p~s~~~~~Qr~GR~gR~g~~-g~~~~~~-~--~~e 443 (518)
+--++|.+|+..|-|-+.+++.||-+..-+ +=|-+.+|||.+.-+|..||+.|.++- +--++|+ + ..|
T Consensus 848 ~EKqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGE 927 (1300)
T KOG1513|consen 848 REKQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGE 927 (1300)
T ss_pred HHHhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccc
Confidence 345678899999999999999999987544 345578999999999999999998863 3333343 3 356
Q ss_pred hHHHHHHHHHHHh
Q 010111 444 VCLVKRFKKLLQK 456 (518)
Q Consensus 444 ~~~~~~~~~~l~~ 456 (518)
..+..-+.+-|+.
T Consensus 928 rRFAS~VAKRLES 940 (1300)
T KOG1513|consen 928 RRFASIVAKRLES 940 (1300)
T ss_pred hHHHHHHHHHHHh
Confidence 6555555555554
No 308
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.13 E-value=0.19 Score=52.51 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.2
Q ss_pred CCEEEECCCCchHHHHhHHHH
Q 010111 70 RDLCINSPTGSGKTLSYALPI 90 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~ 90 (518)
+.+|+.||.|+|||.++.+.+
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~lA 67 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARILA 67 (598)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999998766543
No 309
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.11 E-value=0.1 Score=47.99 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=39.0
Q ss_pred CCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
+..|..++|.||+|+|||..++-.+.+.+.+ +.+++|++ +-+-..|+.+.+..+.
T Consensus 18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~----ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 18 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQM----GEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHHHHc----CCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 4457889999999999998766556655543 34688887 4456667777766653
No 310
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.11 E-value=0.16 Score=52.06 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=15.5
Q ss_pred CCEEEECCCCchHHHHhHH
Q 010111 70 RDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l 88 (518)
+-+|+.||+|+|||.++.+
T Consensus 37 ha~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTARL 55 (504)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3459999999999987654
No 311
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.10 E-value=0.06 Score=55.29 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=16.1
Q ss_pred CCEEEECCCCchHHHHhHHH
Q 010111 70 RDLCINSPTGSGKTLSYALP 89 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~ 89 (518)
+-.|+.||.|+|||.++.+-
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~l 58 (509)
T PRK14958 39 HAYLFTGTRGVGKTTISRIL 58 (509)
T ss_pred eeEEEECCCCCCHHHHHHHH
Confidence 45699999999999876553
No 312
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.06 E-value=0.24 Score=48.63 Aligned_cols=54 Identities=19% Similarity=0.091 Sum_probs=33.6
Q ss_pred CCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
+..|.-+++.+++|+|||...+..+.+ +.. .+.+++|+.-. +-..|+.....++
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~-~a~---~g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAAR-LAK---RGGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHH-HHh---cCCeEEEEECC-cCHHHHHHHHHHc
Confidence 344677899999999999864443333 222 23468888654 3455665555554
No 313
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.99 E-value=0.21 Score=50.10 Aligned_cols=63 Identities=19% Similarity=0.173 Sum_probs=34.2
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHh-hhcccCCccEEEEc--CcHHHHHHHHHHHHHhccccCceEEEeec
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTL-SNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSVGLAVG 137 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l-~~~~~~~~~~lil~--Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g 137 (518)
++.+++.+|||+|||.+...-+.... ..+ +.++.++. |.|.-+ .+.++.++...++.+.....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~---g~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~~~~~~ 286 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG---KKKVALITLDTYRIGA---VEQLKTYAKIMGIPVEVVYD 286 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC---CCeEEEEECCccHHHH---HHHHHHHHHHhCCceEccCC
Confidence 56788999999999987554333322 221 23455553 333222 23444444445666554443
No 314
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.97 E-value=0.14 Score=52.80 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=16.0
Q ss_pred CEEEECCCCchHHHHhHHHH
Q 010111 71 DLCINSPTGSGKTLSYALPI 90 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~l~~ 90 (518)
.+|+.||.|+|||..+.+.+
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lA 59 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLA 59 (546)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999998765533
No 315
>PHA02533 17 large terminase protein; Provisional
Probab=93.94 E-value=0.22 Score=51.43 Aligned_cols=71 Identities=14% Similarity=0.015 Sum_probs=50.4
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcc
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 126 (518)
.|.|+|.+.+..+. .++-.++..+=..|||.+....++...... ++..+++++|+..-|..+.+.++.+..
T Consensus 59 ~L~p~Q~~i~~~~~----~~R~~ii~~aRq~GKStl~a~~al~~a~~~--~~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 59 QMRDYQKDMLKIMH----KNRFNACNLSRQLGKTTVVAIFLLHYVCFN--KDKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred CCcHHHHHHHHHHh----cCeEEEEEEcCcCChHHHHHHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 57899998876542 245557778888999988765444333322 345899999999999888888776544
No 316
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.94 E-value=0.22 Score=49.28 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=19.0
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhh
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLS 95 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~ 95 (518)
..+++|.||+|+|||.+.- .++..+.
T Consensus 40 ~~~i~I~G~~GtGKT~l~~-~~~~~l~ 65 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTK-YVMKELE 65 (365)
T ss_pred CCcEEEECCCCCCHHHHHH-HHHHHHH
Confidence 3689999999999998643 3444443
No 317
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.92 E-value=0.11 Score=47.50 Aligned_cols=54 Identities=20% Similarity=0.124 Sum_probs=37.1
Q ss_pred CCCCCCEEEECCCCchHHHHhHHHHHHHhhh-cccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~~l~~~~~l~~-~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
+..|..+++.+|+|+|||..++--+.+.+.+ + .+++|++-. +-..++.+.+..+
T Consensus 16 ip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~g----e~vlyvs~e-e~~~~l~~~~~s~ 70 (226)
T PF06745_consen 16 IPKGSVVLISGPPGSGKTTLALQFLYNGLKNFG----EKVLYVSFE-EPPEELIENMKSF 70 (226)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT------EEEEESS-S-HHHHHHHHHTT
T ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcC----CcEEEEEec-CCHHHHHHHHHHc
Confidence 3357889999999999998766666666665 3 268888743 4456666666665
No 318
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=93.91 E-value=0.17 Score=49.50 Aligned_cols=29 Identities=24% Similarity=0.166 Sum_probs=21.0
Q ss_pred CCCCCCEEEECCCCchHHHHhHHHHHHHhh
Q 010111 66 GLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (518)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~~l~~~~~l~ 95 (518)
+-.|+.++|.||+|+|||..... +.+.+.
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~-i~~~I~ 193 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQK-IAQAIT 193 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHH-HHHhhc
Confidence 44689999999999999975333 444443
No 319
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.90 E-value=0.27 Score=47.79 Aligned_cols=60 Identities=20% Similarity=0.126 Sum_probs=33.2
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc--CcHHHHHHHHHHHHHhccccCceEEE
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSVGL 134 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~--Pt~~La~Q~~~~~~~~~~~~~~~v~~ 134 (518)
.++.+++.+|+|+|||....-.+.. +... +.++.+++ |.|.=| .++++.++...++.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~-l~~~---g~~V~lItaDtyR~gA---veQLk~yae~lgvpv~~ 266 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ-LLKQ---NRTVGFITTDTFRSGA---VEQFQGYADKLDVELIV 266 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HHHc---CCeEEEEeCCccCccH---HHHHHHHhhcCCCCEEe
Confidence 3567889999999999875544433 3222 23455553 333322 23444555555655443
No 320
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.87 E-value=0.73 Score=45.92 Aligned_cols=61 Identities=16% Similarity=0.102 Sum_probs=34.5
Q ss_pred CEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc--CcHHHHHHHHHHHHHhccccCceEEEeecC
Q 010111 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSVGLAVGQ 138 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~--Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~ 138 (518)
-+++++++|+|||.++.--+. .+... +.++++++ |.|.-|. ++++.++...++++......
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~-~l~~~---G~kV~lV~~D~~R~aA~---eQLk~~a~~~~vp~~~~~~~ 164 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAY-YYQRK---GFKPCLVCADTFRAGAF---DQLKQNATKARIPFYGSYTE 164 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHHC---CCCEEEEcCcccchhHH---HHHHHHhhccCCeEEeecCC
Confidence 467899999999976554333 23332 34666664 3454443 34444555556666544443
No 321
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.81 E-value=0.56 Score=46.91 Aligned_cols=60 Identities=22% Similarity=0.225 Sum_probs=31.9
Q ss_pred CEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc--CcHHHHHHHHHHHHHhccccCceEEEee
Q 010111 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSVGLAV 136 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~--Pt~~La~Q~~~~~~~~~~~~~~~v~~~~ 136 (518)
-+++++++|+|||.++.--+.. +... .+.+++++. +.|.-+. +.+..++...++++....
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~-l~~~--~g~kV~lV~~D~~R~~a~---~QL~~~a~~~gvp~~~~~ 162 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYY-LKKK--QGKKVLLVACDLYRPAAI---EQLKVLGQQVGVPVFALG 162 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHH-HHHh--CCCeEEEEeccccchHHH---HHHHHHHHhcCCceEecC
Confidence 4678999999999876554433 3211 123455553 3343332 233344444465554433
No 322
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.77 E-value=0.33 Score=54.85 Aligned_cols=81 Identities=11% Similarity=0.224 Sum_probs=66.5
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhc-CCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc-cccCCCCCCCCEEE
Q 010111 331 GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVV 408 (518)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~-~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~GiDip~v~~VI 408 (518)
.+.+++|.+||+..|...++.+... ...++.+..++|..+..++..+++.+++|.++|+|+|.. +...+++.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4678999999999999999988753 333577888999999999999999999999999999964 44556777888877
Q ss_pred EcC
Q 010111 409 NYD 411 (518)
Q Consensus 409 ~~~ 411 (518)
.-.
T Consensus 728 IDE 730 (1147)
T PRK10689 728 VDE 730 (1147)
T ss_pred Eec
Confidence 643
No 323
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=93.74 E-value=0.087 Score=54.72 Aligned_cols=115 Identities=18% Similarity=0.143 Sum_probs=64.8
Q ss_pred CCcccCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCC----CCCC--CCEEEECCCCchHHHHhHHHH
Q 010111 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGP----GLFE--RDLCINSPTGSGKTLSYALPI 90 (518)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~----~~~~--~~~li~apTGsGKT~~~~l~~ 90 (518)
+.+|..-.+..++++++.-+-...-+|..-.-..+...|.+|+-+.... +-.| ..+||-...|-||-.+..-.+
T Consensus 231 kaHPD~VVEtatLSSV~ppdi~YqlalP~i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiI 310 (1300)
T KOG1513|consen 231 KAHPDRVVETATLSSVEPPDITYQLALPSIDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGII 310 (1300)
T ss_pred ccCCccceeeeeccccCCCCceEEEecccCcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEE
Confidence 3344444555555554322212222222222236778888887655432 1234 346776666777765544446
Q ss_pred HHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEe
Q 010111 91 VQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLA 135 (518)
Q Consensus 91 ~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~ 135 (518)
+++..++ ..++|++.-+..|-....+.++..... ++.|..+
T Consensus 311 feNyLkG---RKrAlW~SVSsDLKfDAERDL~DigA~-~I~V~al 351 (1300)
T KOG1513|consen 311 FENYLKG---RKRALWFSVSSDLKFDAERDLRDIGAT-GIAVHAL 351 (1300)
T ss_pred ehhhhcc---cceeEEEEeccccccchhhchhhcCCC-Cccceeh
Confidence 6666554 347999999999988777778776443 4555443
No 324
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.72 E-value=0.25 Score=59.03 Aligned_cols=64 Identities=22% Similarity=0.279 Sum_probs=44.4
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhH---HHHHHHhhhcccCCccEEEEcCcHHHHHHHH
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA---LPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~---l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~ 118 (518)
.+++.|.+|+..++.. .++-++|.++.|+|||.+.. -++.+.+.. .+.+++.++||-.-+.++.
T Consensus 1019 ~Lt~~Q~~Ai~~il~~--~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~---~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIIST--KDRFVAVQGLAGVGKTTMLESRYKPVLQAFES---EQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh---cCCeEEEEeChHHHHHHHH
Confidence 7999999998877631 23567889999999998641 223333332 3557899999977665543
No 325
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.71 E-value=0.19 Score=54.16 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=15.0
Q ss_pred CEEEECCCCchHHHHhHH
Q 010111 71 DLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~l 88 (518)
-.|+.||.|+|||.++.+
T Consensus 40 AyLFtGPpGtGKTTLARi 57 (944)
T PRK14949 40 AYLFTGTRGVGKTSLARL 57 (944)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 358999999999987555
No 326
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.70 E-value=0.18 Score=53.42 Aligned_cols=94 Identities=10% Similarity=0.113 Sum_probs=75.9
Q ss_pred cCCCCcHHHHHHHHHhc--CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEE
Q 010111 314 CESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391 (518)
Q Consensus 314 ~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLva 391 (518)
+.-+.|.+..+.++... .++.+||.++.+.....+.+.|.... +.+++++|+++++.+|...+.+..+|+.+|+|.
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rF--g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIG 302 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARF--GAKVAVLHSGLSPGERYRVWRRARRGEARVVIG 302 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHh--CCChhhhcccCChHHHHHHHHHHhcCCceEEEE
Confidence 34567878877777643 46799999999999999999987643 389999999999999999999999999999999
Q ss_pred cCccccCCCCCCCCEEEEc
Q 010111 392 SDAMTRGMDVEGVNNVVNY 410 (518)
Q Consensus 392 T~~~~~GiDip~v~~VI~~ 410 (518)
|-.+-. .-++++..||..
T Consensus 303 tRSAlF-~Pf~~LGLIIvD 320 (730)
T COG1198 303 TRSALF-LPFKNLGLIIVD 320 (730)
T ss_pred echhhc-CchhhccEEEEe
Confidence 976532 345567777754
No 327
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.68 E-value=0.15 Score=53.33 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=15.7
Q ss_pred CCEEEECCCCchHHHHhHH
Q 010111 70 RDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l 88 (518)
+..|+.||.|+|||.++.+
T Consensus 39 hayLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 39 HAFLFTGARGVGKTSTARI 57 (576)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3468999999999987655
No 328
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.67 E-value=0.38 Score=48.69 Aligned_cols=62 Identities=16% Similarity=0.184 Sum_probs=32.9
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEE-cCc-HHHHHHHHHHHHHhccccCceEEEe
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV-LPT-RDLALQVKDVFAAIAPAVGLSVGLA 135 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil-~Pt-~~La~Q~~~~~~~~~~~~~~~v~~~ 135 (518)
|+-+.+.||||+|||.+....+.......+ ..++.++ +-+ |.= ..+.++.++...++.+...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G--~~kV~LI~~Dt~Rig---A~EQLr~~AeilGVpv~~~ 319 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHG--ASKVALLTTDSYRIG---GHEQLRIYGKILGVPVHAV 319 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcC--CCeEEEEeCCccchh---HHHHHHHHHHHhCCCeecc
Confidence 456789999999999876554433222221 1134333 333 222 2345555555556555443
No 329
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.67 E-value=0.4 Score=48.17 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=15.7
Q ss_pred CCEEEECCCCchHHHHhHH
Q 010111 70 RDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l 88 (518)
.++++.||+|+|||..+-.
T Consensus 37 ~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARI 55 (413)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4789999999999986443
No 330
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=93.61 E-value=0.029 Score=48.88 Aligned_cols=44 Identities=25% Similarity=0.335 Sum_probs=28.7
Q ss_pred HhhcCCCcEEEeCChHHHHhHhcCC--CCCCCcccEEEEechhHhhh
Q 010111 167 QELQSAVDILVATPGRLMDHINATR--GFTLEHLCYLVVDETDRLLR 211 (518)
Q Consensus 167 ~~~~~~~~Iiv~Tp~~l~~~l~~~~--~~~~~~~~~vViDEah~~~~ 211 (518)
+.....+||+|+++..|++...... .+.+ .-.+|||||||.+.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~-~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDL-KDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--C-CCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccc-cCcEEEEecccchHH
Confidence 4556678999999998876543311 1222 346899999998744
No 331
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.57 E-value=0.71 Score=47.03 Aligned_cols=64 Identities=19% Similarity=0.147 Sum_probs=33.8
Q ss_pred CCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc--CcHHHHHHHHHHHHHhccccCceEEEe
Q 010111 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSVGLA 135 (518)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~--Pt~~La~Q~~~~~~~~~~~~~~~v~~~ 135 (518)
..|+.+.+.||||+|||..+..-+....... .+.++.++. +.+.-+. +.++.+....++.+...
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~--~gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~~a 413 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQH--APRDVALVTTDTQRVGGR---EQLHSYGRQLGIAVHEA 413 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCceEEEecccccccHH---HHHHHhhcccCceeEec
Confidence 3567888999999999987544333222221 122454443 2343332 33444444455555443
No 332
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.49 E-value=0.083 Score=54.64 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=16.4
Q ss_pred CCEEEECCCCchHHHHhHHH
Q 010111 70 RDLCINSPTGSGKTLSYALP 89 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~ 89 (518)
+.+|+.||.|+|||..+...
T Consensus 39 hA~Lf~GP~GvGKTTlA~~l 58 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIF 58 (605)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 56889999999999876553
No 333
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.45 E-value=0.095 Score=54.48 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=16.9
Q ss_pred CCEEEECCCCchHHHHhHHHH
Q 010111 70 RDLCINSPTGSGKTLSYALPI 90 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~ 90 (518)
..+|+.+|.|+|||.++.+.+
T Consensus 39 ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 467899999999999866543
No 334
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.45 E-value=0.16 Score=53.35 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=16.5
Q ss_pred CCEEEECCCCchHHHHhHHH
Q 010111 70 RDLCINSPTGSGKTLSYALP 89 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~ 89 (518)
+.+|+.||.|+|||..+.+.
T Consensus 39 Ha~Lf~GP~GvGKTTlAriL 58 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARIL 58 (709)
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 46799999999999876553
No 335
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.42 E-value=0.088 Score=57.08 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=17.4
Q ss_pred CCEEEECCCCchHHHHhHHHHH
Q 010111 70 RDLCINSPTGSGKTLSYALPIV 91 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~ 91 (518)
+-+|+.+|.|+|||.++.+.+-
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lAr 59 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILAR 59 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4478999999999998666443
No 336
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.38 E-value=0.37 Score=47.09 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=33.1
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc--CcH-HHHHHHHHHHHHhccccCceEEEee
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTR-DLALQVKDVFAAIAPAVGLSVGLAV 136 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~--Pt~-~La~Q~~~~~~~~~~~~~~~v~~~~ 136 (518)
+.+++.+|||+|||.....-+.. +... +.++.++. |.| ..+.| ++.++...++++....
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~~---GkkVglI~aDt~RiaAvEQ----Lk~yae~lgipv~v~~ 303 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHGK---KKTVGFITTDHSRIGTVQQ----LQDYVKTIGFEVIAVR 303 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHHc---CCcEEEEecCCcchHHHHH----HHHHhhhcCCcEEecC
Confidence 57789999999999875554433 3322 33455544 333 22333 3344444566665443
No 337
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.37 E-value=0.21 Score=44.00 Aligned_cols=33 Identities=30% Similarity=0.396 Sum_probs=25.8
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHH
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~ 85 (518)
.+++-|.+.+...+. .+..+++.+|||||||..
T Consensus 9 ~~~~~~~~~l~~~v~---~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVE---ARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHh---CCCEEEEECCCCCCHHHH
Confidence 456667777665554 589999999999999975
No 338
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.36 E-value=0.14 Score=53.14 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=16.1
Q ss_pred CCEEEECCCCchHHHHhHHH
Q 010111 70 RDLCINSPTGSGKTLSYALP 89 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~ 89 (518)
+-+|+.||.|+|||..+.+.
T Consensus 39 HA~LFtGP~GvGKTTLAriL 58 (700)
T PRK12323 39 HAYLFTGTRGVGKTTLSRIL 58 (700)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34699999999999876553
No 339
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.30 E-value=0.18 Score=52.54 Aligned_cols=20 Identities=30% Similarity=0.399 Sum_probs=16.1
Q ss_pred CEEEECCCCchHHHHhHHHH
Q 010111 71 DLCINSPTGSGKTLSYALPI 90 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~l~~ 90 (518)
-.|+.||.|+|||.++.+.+
T Consensus 37 a~Lf~Gp~G~GKTt~A~~lA 56 (584)
T PRK14952 37 AYLFSGPRGCGKTSSARILA 56 (584)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999998766533
No 340
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.28 E-value=0.35 Score=44.42 Aligned_cols=54 Identities=13% Similarity=0.154 Sum_probs=35.4
Q ss_pred CCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
+..|.-+++.+++|+|||..+..-+.+.+.+ +.+++|+.-- +-..++.+.+..+
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~----g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALKQ----GKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHhC----CCEEEEEEcC-CCHHHHHHHHHHC
Confidence 3456788999999999998765555554443 3467777643 3344566666554
No 341
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=93.28 E-value=0.66 Score=48.33 Aligned_cols=50 Identities=12% Similarity=0.239 Sum_probs=36.3
Q ss_pred EEEe-CChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccc
Q 010111 175 ILVA-TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 228 (518)
Q Consensus 175 Iiv~-Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~ 228 (518)
-.|+ =||++.+.+...+..+ -++.+||+|.|.+.-.++--..+++.+...
T Consensus 398 TYIGamPGrIiQ~mkka~~~N----Pv~LLDEIDKm~ss~rGDPaSALLEVLDPE 448 (782)
T COG0466 398 TYIGAMPGKIIQGMKKAGVKN----PVFLLDEIDKMGSSFRGDPASALLEVLDPE 448 (782)
T ss_pred cccccCChHHHHHHHHhCCcC----CeEEeechhhccCCCCCChHHHHHhhcCHh
Confidence 3444 4999999998755433 289999999998877777677777766543
No 342
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.26 E-value=0.51 Score=45.71 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=29.1
Q ss_pred cchhhHHHHHHhhCCC-CCCCCEEEECCCCchHHHHhHHHH
Q 010111 51 LFPVQVAVWQETIGPG-LFERDLCINSPTGSGKTLSYALPI 90 (518)
Q Consensus 51 ~~~~Q~~a~~~~~~~~-~~~~~~li~apTGsGKT~~~~l~~ 90 (518)
++|||...|..+.... .-.+-.++.||.|+||+..+..-+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A 42 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLA 42 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHH
Confidence 4799999998877531 112567899999999998755433
No 343
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.26 E-value=0.66 Score=43.52 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=22.3
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~ 108 (518)
+-+++.+|+|+|||.+..-.+.. +.. .+.+++++.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~-l~~---~g~~V~li~ 107 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANK-LKK---QGKSVLLAA 107 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH-HHh---cCCEEEEEe
Confidence 45678899999999875554432 332 234566664
No 344
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.24 E-value=0.58 Score=50.25 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=15.9
Q ss_pred CCEEEECCCCchHHHHhHH
Q 010111 70 RDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l 88 (518)
.++++.||+|+|||..+..
T Consensus 53 ~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARI 71 (725)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5789999999999986443
No 345
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.21 E-value=0.29 Score=51.02 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=17.0
Q ss_pred CCCEEEECCCCchHHHHhHHHH
Q 010111 69 ERDLCINSPTGSGKTLSYALPI 90 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~ 90 (518)
++-.|++||.|+|||.++-+.+
T Consensus 38 ~hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3457889999999998765543
No 346
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=0.053 Score=50.39 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=16.5
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
...|+++.+|||||||+.+.
T Consensus 96 ~KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eeccEEEECCCCCcHHHHHH
Confidence 34789999999999998543
No 347
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.19 E-value=0.48 Score=48.81 Aligned_cols=47 Identities=23% Similarity=0.192 Sum_probs=39.5
Q ss_pred CCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHh
Q 010111 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (518)
Q Consensus 47 g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l 94 (518)
.| +|+++|.+-+.++..-+..|+-.++.+|||||||+..+..++.+|
T Consensus 13 Py-~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 13 PY-TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CC-CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 44 799999998888776666899889999999999998877777665
No 348
>PTZ00293 thymidine kinase; Provisional
Probab=93.15 E-value=0.15 Score=45.31 Aligned_cols=39 Identities=21% Similarity=0.147 Sum_probs=26.0
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcH
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~ 111 (518)
|.=.++.||.+||||.-.+-. +.+.. ..+.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~-i~~y~---~ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRL-VKRFT---YSEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHH-HHHHH---HcCCceEEEEecc
Confidence 556689999999999763332 22222 2345788888874
No 349
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.12 E-value=1.1 Score=38.91 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=14.1
Q ss_pred EEEECCCCchHHHHhHH
Q 010111 72 LCINSPTGSGKTLSYAL 88 (518)
Q Consensus 72 ~li~apTGsGKT~~~~l 88 (518)
+++.+++|+|||.....
T Consensus 3 ~~~~G~~G~GKTt~~~~ 19 (173)
T cd03115 3 ILLVGLQGVGKTTTAAK 19 (173)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999987544
No 350
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=93.12 E-value=0.39 Score=45.69 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=29.3
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHH
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~ 122 (518)
..+++++|+|+|||..+-+.+.. .+....+.+=+.-|.+-.+.+.+.|+
T Consensus 163 pSmIlWGppG~GKTtlArlia~t----sk~~SyrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIAST----SKKHSYRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhh----cCCCceEEEEEeccccchHHHHHHHH
Confidence 47899999999999864443221 12233455556666655555444444
No 351
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=93.10 E-value=0.55 Score=48.64 Aligned_cols=89 Identities=16% Similarity=0.285 Sum_probs=68.0
Q ss_pred HHHHHHHhc-CCCcEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCcc-ccC
Q 010111 322 YLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM-TRG 398 (518)
Q Consensus 322 ~l~~~l~~~-~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~-~~G 398 (518)
.+...+... .+.++..-+||---|+.-+..+.++. ..++.|..+.|++....|.++++...+|+++++|.|-++ -..
T Consensus 300 A~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~ 379 (677)
T COG1200 300 ALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDK 379 (677)
T ss_pred HHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcc
Confidence 344444433 46789999999655555444443321 234899999999999999999999999999999999875 678
Q ss_pred CCCCCCCEEEEc
Q 010111 399 MDVEGVNNVVNY 410 (518)
Q Consensus 399 iDip~v~~VI~~ 410 (518)
+++.++-.||.-
T Consensus 380 V~F~~LgLVIiD 391 (677)
T COG1200 380 VEFHNLGLVIID 391 (677)
T ss_pred eeecceeEEEEe
Confidence 999988888853
No 352
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.06 E-value=0.14 Score=53.40 Aligned_cols=73 Identities=18% Similarity=0.148 Sum_probs=50.1
Q ss_pred CccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHH-HHHHHhcc
Q 010111 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK-DVFAAIAP 126 (518)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~-~~~~~~~~ 126 (518)
...+|||.+.+..+-+.. -+.+.+..++-+|||.+.+..+...+... ...+|++.||.++|..+. +.+..+..
T Consensus 15 ~~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~---P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSIDQD---PGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEEeC---CCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 367799998766554321 26788999999999996444333333332 235999999999999876 45555543
No 353
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=93.05 E-value=0.64 Score=48.31 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=43.0
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcc
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 126 (518)
.+-.++..|=-.|||.... +++..+... ..+.++++.+|.+..++.+++++...++
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s-~~Gi~IgytAH~~~ts~~vF~eI~~~le 309 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALAT-FRGIKIGYTAHIRKATEPVFEEIGARLR 309 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHh-CCCCEEEEEcCcHHHHHHHHHHHHHHHh
Confidence 4667888899999998655 555544432 2467899999999999999999888755
No 354
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.00 E-value=0.25 Score=47.17 Aligned_cols=51 Identities=22% Similarity=0.105 Sum_probs=32.5
Q ss_pred HHHhhC--CCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHH
Q 010111 59 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (518)
Q Consensus 59 ~~~~~~--~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~L 113 (518)
++.++. -+..|+-+.|.+|+|||||..++-.+.+.... +.+++|+..--.+
T Consensus 43 LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~----g~~v~yId~E~~~ 95 (321)
T TIGR02012 43 LDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKA----GGTAAFIDAEHAL 95 (321)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCcEEEEcccchh
Confidence 344443 34456788999999999998755544444332 3467888554433
No 355
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=92.97 E-value=0.9 Score=43.84 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=16.2
Q ss_pred cccEEEEechhHhhhHhHHhHHHHHH
Q 010111 197 HLCYLVVDETDRLLREAYQAWLPTVL 222 (518)
Q Consensus 197 ~~~~vViDEah~~~~~~~~~~~~~i~ 222 (518)
..++||+||+|.+........+..++
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~l 125 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFM 125 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHH
Confidence 35799999999883333333344333
No 356
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=92.96 E-value=0.61 Score=45.92 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=21.2
Q ss_pred cccEEEEechhHhhhH-hHHhHHHHHHHhcc
Q 010111 197 HLCYLVVDETDRLLRE-AYQAWLPTVLQLTR 226 (518)
Q Consensus 197 ~~~~vViDEah~~~~~-~~~~~~~~i~~~~~ 226 (518)
++++++||.++.+... ...+.+-+++..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~ 205 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALL 205 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHH
Confidence 5889999999987554 44555666666554
No 357
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=92.96 E-value=0.33 Score=48.71 Aligned_cols=57 Identities=25% Similarity=0.293 Sum_probs=31.5
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc-Cc-HHHHHHHHHHHHHhccccCceEE
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL-PT-RDLALQVKDVFAAIAPAVGLSVG 133 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~-Pt-~~La~Q~~~~~~~~~~~~~~~v~ 133 (518)
..+++++++|+|||.++...+ ..+... +.++++++ .+ |.-+ .+.++.++...++.+.
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA-~~L~~~---g~kV~lV~~D~~R~aa---~eQL~~la~~~gvp~~ 154 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLA-RYFKKK---GLKVGLVAADTYRPAA---YDQLKQLAEKIGVPFY 154 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHH-HHHHHc---CCeEEEecCCCCCHHH---HHHHHHHHHHcCCcEE
Confidence 457889999999998765433 334432 33555554 22 3322 3344444444455543
No 358
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.95 E-value=0.12 Score=47.87 Aligned_cols=26 Identities=23% Similarity=0.505 Sum_probs=20.7
Q ss_pred CEEEECCCCchHHHHhHHHHHHHhhhc
Q 010111 71 DLCINSPTGSGKTLSYALPIVQTLSNR 97 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~l~~~~~l~~~ 97 (518)
=+||.+|||||||.+ +.+++.++.+.
T Consensus 127 LILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 127 LILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred eEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 468899999999987 56677777665
No 359
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.89 E-value=0.41 Score=47.58 Aligned_cols=68 Identities=18% Similarity=0.135 Sum_probs=37.3
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecC
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQ 138 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~ 138 (518)
.|.-+.+.||||+|||.....-+-..+.... ...-.++.+.+--.+ ..+.+..++...++++......
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~-~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v~~~ 257 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHG-ADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSIKDI 257 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEecCCcchh--HHHHHHHHHHHcCCceecCCCH
Confidence 4567889999999999875543332222211 112345555553332 3344555555567666554443
No 360
>PRK09354 recA recombinase A; Provisional
Probab=92.89 E-value=0.6 Score=45.13 Aligned_cols=45 Identities=22% Similarity=0.066 Sum_probs=31.0
Q ss_pred CCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHH
Q 010111 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (518)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La 114 (518)
+..|+-+.|.+|+|||||..++..+.+.... +.+++|+..--.+-
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~~~----G~~~~yId~E~s~~ 101 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQKA----GGTAAFIDAEHALD 101 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCcEEEECCccchH
Confidence 4456778899999999998766655554432 34788887554443
No 361
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.88 E-value=0.25 Score=47.25 Aligned_cols=39 Identities=26% Similarity=0.226 Sum_probs=30.3
Q ss_pred ccchhhHHHHHHhhCCCCCC---CCEEEECCCCchHHHHhHH
Q 010111 50 SLFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~---~~~li~apTGsGKT~~~~l 88 (518)
.++|||...|..+...+..+ .-.++.||.|.||+..+..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~ 44 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVEL 44 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH
Confidence 57899999998877654444 4689999999999976544
No 362
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.81 E-value=0.19 Score=48.14 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=25.6
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHH
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~ 117 (518)
+.+|..+|+|+|||+.+=..+- ......|-+.+..|+..|
T Consensus 246 kgvLm~GPPGTGKTlLAKAvAT--------Ec~tTFFNVSsstltSKw 285 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVAT--------ECGTTFFNVSSSTLTSKW 285 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHH--------hhcCeEEEechhhhhhhh
Confidence 7899999999999985333222 122456666565555433
No 363
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.78 E-value=0.22 Score=52.18 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=16.1
Q ss_pred CCEEEECCCCchHHHHhHHH
Q 010111 70 RDLCINSPTGSGKTLSYALP 89 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~ 89 (518)
+-+|++||.|+|||.++.+.
T Consensus 39 ha~Lf~Gp~GvGKTtlAr~l 58 (618)
T PRK14951 39 HAYLFTGTRGVGKTTVSRIL 58 (618)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34589999999999876653
No 364
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=92.78 E-value=0.23 Score=47.48 Aligned_cols=53 Identities=19% Similarity=0.064 Sum_probs=34.0
Q ss_pred HHHHhhC--CCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHH
Q 010111 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (518)
Q Consensus 58 a~~~~~~--~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La 114 (518)
+++.++. -+..|+-+.|.+|+|+|||..++-.+.+.... +.+++|+.+--.+-
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~----g~~~vyId~E~~~~ 96 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKL----GGTVAFIDAEHALD 96 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCCEEEECccccHH
Confidence 3444444 34456778899999999998755545443332 34788887654443
No 365
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.77 E-value=0.73 Score=46.55 Aligned_cols=102 Identities=13% Similarity=0.127 Sum_probs=76.9
Q ss_pred CCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCcccc
Q 010111 77 PTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 156 (518)
Q Consensus 77 pTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~ 156 (518)
-.++||+-.-++++.+.+..+ -.+.+||.+-+.+-|.|++..+.. ..++++.+++|..+....-..+..
T Consensus 365 lvF~gse~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~---~~~i~v~vIh~e~~~~qrde~~~~------ 433 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEI---YDNINVDVIHGERSQKQRDETMER------ 433 (593)
T ss_pred heeeecchhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhh---ccCcceeeEecccchhHHHHHHHH------
Confidence 358888888888777776665 355799999999999999998872 247999999999776555333221
Q ss_pred CccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechh
Q 010111 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (518)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah 207 (518)
.-.....++||| +.+.+ +.++..+++||-++.-
T Consensus 434 -----------FR~g~IwvLicT-----dll~R--GiDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 434 -----------FRIGKIWVLICT-----DLLAR--GIDFKGVNLVINYDFP 466 (593)
T ss_pred -----------HhccCeeEEEeh-----hhhhc--cccccCcceEEecCCC
Confidence 223457999999 67776 4889999999997765
No 366
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=92.75 E-value=0.26 Score=45.48 Aligned_cols=21 Identities=29% Similarity=0.151 Sum_probs=17.7
Q ss_pred CCCCCCCEEEECCCCchHHHH
Q 010111 65 PGLFERDLCINSPTGSGKTLS 85 (518)
Q Consensus 65 ~~~~~~~~li~apTGsGKT~~ 85 (518)
++-.|+.++|.+|.|+|||..
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHH
Confidence 344689999999999999964
No 367
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.72 E-value=0.47 Score=47.02 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=16.7
Q ss_pred CCCEEEECCCCchHHHHhHHH
Q 010111 69 ERDLCINSPTGSGKTLSYALP 89 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~ 89 (518)
.+.+|+.||.|+|||..+...
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~l 56 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAF 56 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHH
Confidence 356899999999999875543
No 368
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.55 E-value=0.21 Score=46.72 Aligned_cols=55 Identities=16% Similarity=0.082 Sum_probs=39.1
Q ss_pred CCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcc
Q 010111 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (518)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 126 (518)
..|+.++|.+++|||||.-.+-.+.+.+.. +.++++++ +.+...++.+.+..+..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~----ge~vlyvs-~~e~~~~l~~~~~~~g~ 75 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE----GEPVLYVS-TEESPEELLENARSFGW 75 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc----CCcEEEEE-ecCCHHHHHHHHHHcCC
Confidence 357899999999999998755545544443 44677776 55667778877777643
No 369
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.54 E-value=0.099 Score=48.91 Aligned_cols=37 Identities=16% Similarity=0.047 Sum_probs=26.9
Q ss_pred chhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHH
Q 010111 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 52 ~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l 88 (518)
++...+....++..+..+.++++.||+|+|||..+..
T Consensus 4 t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHH
Confidence 4445555555555555789999999999999987543
No 370
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.52 E-value=0.31 Score=51.32 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=16.1
Q ss_pred CCEEEECCCCchHHHHhHHH
Q 010111 70 RDLCINSPTGSGKTLSYALP 89 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~ 89 (518)
+.+|+.||.|+|||.++.+.
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARIL 58 (585)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45689999999999875553
No 371
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.52 E-value=0.28 Score=51.45 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=16.4
Q ss_pred CCEEEECCCCchHHHHhHHH
Q 010111 70 RDLCINSPTGSGKTLSYALP 89 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~ 89 (518)
+..|+.||.|+|||.++.+-
T Consensus 39 ha~Lf~Gp~GvGKttlA~~l 58 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARVF 58 (620)
T ss_pred eeEEEECCCCCCHHHHHHHH
Confidence 45889999999999876653
No 372
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=92.52 E-value=0.3 Score=50.77 Aligned_cols=98 Identities=21% Similarity=0.065 Sum_probs=62.0
Q ss_pred CHHHHHHHHhC--CCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcc--cCCccEEEEcCcH
Q 010111 36 DPRLKVALQNM--GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTR 111 (518)
Q Consensus 36 ~~~~~~~l~~~--g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~--~~~~~~lil~Pt~ 111 (518)
+..+++++... |...+..-|..|++..+. .+--++++|+|+|||++-+.++-..|.+.. .....++++|-|.
T Consensus 362 s~~~~n~lePp~~g~~ildsSq~~A~qs~lt----yelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tn 437 (1025)
T KOG1807|consen 362 SRHIVNALEPPGPGLVILDSSQQFAKQSKLT----YELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTN 437 (1025)
T ss_pred hhhhhhhcCCCCCCceeecHHHHHHHHHHhh----hhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhh
Confidence 34455555543 333456679998876653 566799999999999986665444444431 2234689999999
Q ss_pred HHHHHHHHHHHHhccccCceEEEeecCCch
Q 010111 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSI 141 (518)
Q Consensus 112 ~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~ 141 (518)
.-+.|...-+-.. +-......|+...
T Consensus 438 havdq~ligiy~~----qrpsImr~gsr~~ 463 (1025)
T KOG1807|consen 438 HAVDQYLIGIYYH----QRPSIMRQGSRFF 463 (1025)
T ss_pred HHHHHHHHHHHhc----CCceEEEeccccC
Confidence 8888876655431 2333444555443
No 373
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=92.51 E-value=0.097 Score=52.14 Aligned_cols=56 Identities=21% Similarity=0.212 Sum_probs=40.5
Q ss_pred CEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEee
Q 010111 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAV 136 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~ 136 (518)
++++.||||||||.++++|-+-.. ...++|+=|.-++........+.. |.+|.++-
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~------~~s~vv~D~Kge~~~~t~~~r~~~----G~~V~v~n 56 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW------PGSVVVLDPKGENFELTSEHRRAL----GRKVFVFD 56 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC------CCCEEEEccchhHHHHHHHHHHHc----CCeEEEEc
Confidence 478999999999999888866432 236899999999987666555543 44555443
No 374
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.49 E-value=0.41 Score=44.69 Aligned_cols=38 Identities=21% Similarity=0.077 Sum_probs=27.3
Q ss_pred CCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc
Q 010111 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (518)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~ 108 (518)
..|.-++|.+++|+|||..++--+.+.+.+ +.+++|++
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~----Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASR----GNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhC----CCcEEEEE
Confidence 356788999999999998755545544433 34788886
No 375
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=92.35 E-value=1.7 Score=41.89 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=29.8
Q ss_pred cchhhHHHHHHhhCCCCC-CCCEEEECCCCchHHHHhHHHHH
Q 010111 51 LFPVQVAVWQETIGPGLF-ERDLCINSPTGSGKTLSYALPIV 91 (518)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~-~~~~li~apTGsGKT~~~~l~~~ 91 (518)
++|||..+|..+....-. ....++.||.|+|||..+...+-
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~ 43 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQ 43 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHH
Confidence 479999999887754211 24688999999999987555433
No 376
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.33 E-value=0.16 Score=49.13 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=29.0
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHH
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La 114 (518)
.+++++|+||||||||.. +-.++..+. ...+++.+=.+.||.
T Consensus 161 ~~~nilI~G~tGSGKTTl-l~aLl~~i~----~~~rivtiEd~~El~ 202 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTM-SKTLISAIP----PQERLITIEDTLELV 202 (344)
T ss_pred cCCeEEEECCCCccHHHH-HHHHHcccC----CCCCEEEECCCcccc
Confidence 579999999999999975 233443332 234677777777763
No 377
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=92.18 E-value=0.15 Score=52.25 Aligned_cols=49 Identities=24% Similarity=0.314 Sum_probs=38.0
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
.++++.||||||||..+++|.+-. . ++ .++|.=|--+|........++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--~---~~-s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--Y---PG-SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--c---cC-CEEEEECCCcHHHHHHHHHHHC
Confidence 469999999999999999887632 2 12 6888889999988766666654
No 378
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.18 E-value=0.51 Score=49.17 Aligned_cols=144 Identities=17% Similarity=0.213 Sum_probs=77.2
Q ss_pred CCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEE-cCcHHHHHHHHHHHHHhccccCceEEEeecCCch----
Q 010111 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV-LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSI---- 141 (518)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil-~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~---- 141 (518)
..|+.+.+++|.|+|||.++ .+++++++- ..+ ++++= +|-+++-.++ +++.....+-...++.|....
T Consensus 492 ~pGe~vALVGPSGsGKSTia--sLL~rfY~P-tsG-~IllDG~~i~~~~~~~---lr~~Ig~V~QEPvLFs~sI~eNI~Y 564 (716)
T KOG0058|consen 492 RPGEVVALVGPSGSGKSTIA--SLLLRFYDP-TSG-RILLDGVPISDINHKY---LRRKIGLVGQEPVLFSGSIRENIAY 564 (716)
T ss_pred CCCCEEEEECCCCCCHHHHH--HHHHHhcCC-CCC-eEEECCeehhhcCHHH---HHHHeeeeeccceeecccHHHHHhc
Confidence 45899999999999999864 466777663 222 23321 5666664443 333322222222222221111
Q ss_pred ------HHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCC----CCCCCcccEEEEechhHhhh
Q 010111 142 ------ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR----GFTLEHLCYLVVDETDRLLR 211 (518)
Q Consensus 142 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~----~~~~~~~~~vViDEah~~~~ 211 (518)
.+....-.+ .-+..+....+.++.+-.|+.-|..+.-=++.+ .-.+++.+++|+|||-..+|
T Consensus 565 G~~~~t~e~i~~AAk--------~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALD 636 (716)
T KOG0058|consen 565 GLDNATDEEIEAAAK--------MANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALD 636 (716)
T ss_pred CCCCCCHHHHHHHHH--------HhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcc
Confidence 111100000 112233445566677777777655432111100 01256788999999999999
Q ss_pred HhHHhHHHHHHHhc
Q 010111 212 EAYQAWLPTVLQLT 225 (518)
Q Consensus 212 ~~~~~~~~~i~~~~ 225 (518)
......++.-+..+
T Consensus 637 aeSE~lVq~aL~~~ 650 (716)
T KOG0058|consen 637 AESEYLVQEALDRL 650 (716)
T ss_pred hhhHHHHHHHHHHh
Confidence 88877777766544
No 379
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.00 E-value=0.26 Score=49.25 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=27.2
Q ss_pred chhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhh
Q 010111 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (518)
Q Consensus 52 ~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~ 96 (518)
.+.|.+.+..++.. ...=+|+.||||||||.+ +..+++.+..
T Consensus 243 ~~~~~~~~~~~~~~--p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNR--PQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhC--CCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 56676666555541 234568899999999987 4445555443
No 380
>PRK04328 hypothetical protein; Provisional
Probab=91.99 E-value=0.33 Score=44.98 Aligned_cols=54 Identities=13% Similarity=0.104 Sum_probs=36.4
Q ss_pred CCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
..|..+++.+++|+|||..++--+.+.+.+ +.+++|++ +-+-..++.+.++.+.
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~----ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQM----GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhc----CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 357889999999999998655555555544 33677776 4445556666666653
No 381
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=91.87 E-value=0.6 Score=45.62 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=21.2
Q ss_pred CCCCCCEEEECCCCchHHHHhHHHHHHHhhh
Q 010111 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (518)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~~l~~~~~l~~ 96 (518)
+-.|+..+|.||.|+|||.. +--+.+.+..
T Consensus 166 IGkGQR~lIvgppGvGKTTL-aK~Ian~I~~ 195 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVL-LQNIANSITT 195 (416)
T ss_pred cccCceEEEeCCCCCChhHH-HHHHHHHHHh
Confidence 34588999999999999964 3334444443
No 382
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.81 E-value=0.41 Score=46.68 Aligned_cols=34 Identities=15% Similarity=-0.023 Sum_probs=22.5
Q ss_pred hHHHHHHhhCCCCCCC---CEEEECCCCchHHHHhHH
Q 010111 55 QVAVWQETIGPGLFER---DLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 55 Q~~a~~~~~~~~~~~~---~~li~apTGsGKT~~~~l 88 (518)
|.++...+...+..|+ -.++.||.|+|||..+..
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~ 64 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFH 64 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHH
Confidence 4455444444444454 589999999999976543
No 383
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=91.80 E-value=0.62 Score=48.19 Aligned_cols=73 Identities=18% Similarity=0.396 Sum_probs=58.2
Q ss_pred EEEEcCChhhHHHHHHHHhhcCCC--ceeEEEccccCChHHHHHHHHHHhcCCceEEEEcC-----ccccC-CCCCCCCE
Q 010111 335 CIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTRG-MDVEGVNN 406 (518)
Q Consensus 335 ~lVf~~s~~~~~~l~~~L~~~~~~--~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G-iDip~v~~ 406 (518)
+||+++|++.|..+++.+...+.. ++.+..+.|+.+...+. +.++.| .+|||+|+ .+.+| +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~---~~l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI---EALKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHH---HHHhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 999999999999999999876532 47789999999886655 444556 99999998 35666 88888998
Q ss_pred EEEcC
Q 010111 407 VVNYD 411 (518)
Q Consensus 407 VI~~~ 411 (518)
+|.-.
T Consensus 178 lVlDE 182 (513)
T COG0513 178 LVLDE 182 (513)
T ss_pred EEecc
Confidence 88643
No 384
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=91.78 E-value=0.19 Score=52.44 Aligned_cols=56 Identities=18% Similarity=0.105 Sum_probs=43.2
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEe
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLA 135 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~ 135 (518)
.++++.||||||||..+++|-+-.+. ..++|+=|--|+........++. |.+|.++
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~------~S~VV~DpKGEl~~~Ta~~R~~~----G~~V~vf 214 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWE------DSVVVHDIKLENYELTSGWREKQ----GQKVFVW 214 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCC------CCEEEEeCcHHHHHHHHHHHHHC----CCeEEEE
Confidence 57899999999999999999876531 25889999999988777666654 5455444
No 385
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.75 E-value=1 Score=45.65 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=58.1
Q ss_pred CCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeC
Q 010111 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (518)
Q Consensus 100 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~T 179 (518)
...++||.|-|+.-+.++...++.. ++++..++|+.+..++...+.. .-...+.|+|||
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~-----------------FreG~~~vLVAT 398 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKG-----------------FREGKSPVLVAT 398 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHh-----------------cccCCcceEEEc
Confidence 4568999999999999998888875 5789999999987776544332 223568999999
Q ss_pred ChHHHHhHhcCCCCCCCcccEEEE
Q 010111 180 PGRLMDHINATRGFTLEHLCYLVV 203 (518)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vVi 203 (518)
+... +.+++.++++||-
T Consensus 399 -----dVAa--RGLDi~dV~lVIn 415 (519)
T KOG0331|consen 399 -----DVAA--RGLDVPDVDLVIN 415 (519)
T ss_pred -----cccc--ccCCCccccEEEe
Confidence 3333 3688889999983
No 386
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=91.62 E-value=2 Score=37.77 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.7
Q ss_pred CCEEEECCCCchHHHHhHH
Q 010111 70 RDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l 88 (518)
..+++.||+|+|||..+..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~ 33 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALA 33 (188)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 5688999999999986544
No 387
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.62 E-value=0.3 Score=50.51 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=15.9
Q ss_pred CCEEEECCCCchHHHHhHHH
Q 010111 70 RDLCINSPTGSGKTLSYALP 89 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~ 89 (518)
+-.|+.||.|+|||.++.+-
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~l 58 (527)
T PRK14969 39 HAYLFTGTRGVGKTTLARIL 58 (527)
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 34689999999999876553
No 388
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=91.58 E-value=0.63 Score=45.77 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=15.3
Q ss_pred CCEEEECCCCchHHHHhHH
Q 010111 70 RDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l 88 (518)
+.+++.||+|+|||..+..
T Consensus 37 ~~~Ll~G~~G~GKt~~a~~ 55 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIARI 55 (355)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578999999999976443
No 389
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.55 E-value=2.4 Score=39.57 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=17.0
Q ss_pred CCEEEECCCCchHHHHhHHHH
Q 010111 70 RDLCINSPTGSGKTLSYALPI 90 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~ 90 (518)
..+++.+++|+|||..+...+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~ 96 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMA 96 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHH
Confidence 678899999999998766543
No 390
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.47 E-value=1.8 Score=41.55 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=22.0
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~ 108 (518)
+.-+++.+|+|+|||.++..-+. .+.. .+.+++++.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~-~l~~---~g~~V~Li~ 149 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAH-KYKA---QGKKVLLAA 149 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH-HHHh---cCCeEEEEe
Confidence 45677899999999986443222 2222 233566654
No 391
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=91.42 E-value=0.69 Score=42.64 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=16.0
Q ss_pred CCEEEECCCCchHHHHhHH
Q 010111 70 RDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l 88 (518)
.++++.+|+|.|||..+.+
T Consensus 53 DHvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred CeEEeeCCCCCcHHHHHHH
Confidence 5799999999999986544
No 392
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=91.42 E-value=0.74 Score=37.11 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=30.8
Q ss_pred CCCEE--EECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc-----CcHHHHHHHHHHHHH
Q 010111 69 ERDLC--INSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL-----PTRDLALQVKDVFAA 123 (518)
Q Consensus 69 ~~~~l--i~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~-----Pt~~La~Q~~~~~~~ 123 (518)
.+.++ +.|+||+|||.+.-+. .+++.....+...+.... |....+.+-.++++.
T Consensus 51 ~KpLVlSfHG~tGtGKn~v~~li-A~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~ 111 (127)
T PF06309_consen 51 RKPLVLSFHGWTGTGKNFVSRLI-AEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKS 111 (127)
T ss_pred CCCEEEEeecCCCCcHHHHHHHH-HHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHH
Confidence 35554 6999999999987774 445444433333344333 554444444444443
No 393
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.29 E-value=0.89 Score=43.88 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=15.4
Q ss_pred CCEEEECCCCchHHHHhHH
Q 010111 70 RDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l 88 (518)
.++++.||+|+|||.++..
T Consensus 39 ~~~ll~G~~G~GKt~~~~~ 57 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALA 57 (319)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3589999999999986443
No 394
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=91.26 E-value=0.32 Score=51.62 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=16.0
Q ss_pred CCEEEECCCCchHHHHhHHH
Q 010111 70 RDLCINSPTGSGKTLSYALP 89 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~ 89 (518)
+-.|+.||.|+|||.++.+-
T Consensus 41 HAYLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 41 HAYLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 34689999999999876543
No 395
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.18 E-value=0.37 Score=50.77 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=16.5
Q ss_pred CCEEEECCCCchHHHHhHHH
Q 010111 70 RDLCINSPTGSGKTLSYALP 89 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~ 89 (518)
..+|+.||.|+|||.++...
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~l 58 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARIL 58 (620)
T ss_pred ceEEEECCCCCChHHHHHHH
Confidence 56799999999999875553
No 396
>CHL00095 clpC Clp protease ATP binding subunit
Probab=91.16 E-value=0.24 Score=54.41 Aligned_cols=36 Identities=19% Similarity=0.008 Sum_probs=24.7
Q ss_pred hhhHHHHHHhhCCCCC--------C---CCEEEECCCCchHHHHhHH
Q 010111 53 PVQVAVWQETIGPGLF--------E---RDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 53 ~~Q~~a~~~~~~~~~~--------~---~~~li~apTGsGKT~~~~l 88 (518)
..|.+|+..+...+.. + ..+++.||||+|||..+-.
T Consensus 512 ~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~ 558 (821)
T CHL00095 512 IGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKA 558 (821)
T ss_pred cChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHH
Confidence 4798888776543321 1 1478999999999986443
No 397
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=91.14 E-value=0.23 Score=51.48 Aligned_cols=50 Identities=20% Similarity=0.319 Sum_probs=33.6
Q ss_pred cEEE-eCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhccc
Q 010111 174 DILV-ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 227 (518)
Q Consensus 174 ~Iiv-~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~ 227 (518)
.-+| +-||++.+.+.+.+.-+ -++.+||+|.+.....++--..+++.+..
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~N----PliLiDEvDKlG~g~qGDPasALLElLDP 535 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTEN----PLILIDEVDKLGSGHQGDPASALLELLDP 535 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCC----ceEEeehhhhhCCCCCCChHHHHHHhcCh
Confidence 3444 45999999998744322 27889999999744445555666666543
No 398
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.10 E-value=0.46 Score=50.07 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=15.4
Q ss_pred CCEEEECCCCchHHHHhHH
Q 010111 70 RDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l 88 (518)
+-.|++||.|+|||.++.+
T Consensus 40 hayLf~Gp~G~GKtt~A~~ 58 (614)
T PRK14971 40 HAYLFCGPRGVGKTTCARI 58 (614)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 4478999999999986544
No 399
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.09 E-value=0.22 Score=48.11 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=27.7
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHH
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~L 113 (518)
.+++++|+|+||||||.. +-.++..+.. ..+++.+=-+.||
T Consensus 159 ~~~nili~G~tgSGKTTl-l~aL~~~ip~----~~ri~tiEd~~El 199 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTF-TNAALREIPA----IERLITVEDAREI 199 (332)
T ss_pred cCCcEEEECCCCCCHHHH-HHHHHhhCCC----CCeEEEecCCCcc
Confidence 579999999999999975 3334444432 3366666555555
No 400
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=91.07 E-value=0.48 Score=48.02 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=16.3
Q ss_pred CCEEEECCCCchHHHHhHHH
Q 010111 70 RDLCINSPTGSGKTLSYALP 89 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~ 89 (518)
+.+|+.||+|+|||.++...
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~l 59 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARIF 59 (451)
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 45789999999999875553
No 401
>PRK14701 reverse gyrase; Provisional
Probab=91.07 E-value=0.82 Score=53.58 Aligned_cols=64 Identities=17% Similarity=0.367 Sum_probs=55.5
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcCC---CceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc
Q 010111 331 GEEKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (518)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~---~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 394 (518)
.+.++||.+||+.-+..+.+.|+..+. .+..+..+||+++..++.++++.+.+|+.+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 456899999999999999999887532 3467889999999999999999999999999999975
No 402
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.06 E-value=0.84 Score=45.20 Aligned_cols=57 Identities=23% Similarity=0.219 Sum_probs=31.2
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc--CcHHHHHHHHHHHHHhccccCceE
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSV 132 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~--Pt~~La~Q~~~~~~~~~~~~~~~v 132 (518)
.-+++.+|+|+|||.++.--+...... .+.++.+++ +.|..+.. .++.++...++..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~---~G~~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~ 282 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLH---MGKSVSLYTTDNYRIAAIE---QLKRYADTMGMPF 282 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHh---cCCeEEEecccchhhhHHH---HHHHHHHhcCCCe
Confidence 347789999999998766544433222 123454443 33444432 4444444445543
No 403
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=91.02 E-value=0.61 Score=43.57 Aligned_cols=62 Identities=19% Similarity=0.344 Sum_probs=36.3
Q ss_pred HHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHH
Q 010111 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (518)
Q Consensus 42 ~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~ 112 (518)
.|.++|+ .+.|.+.+..++. ..+..+++.+|||||||... -.+++.+.. ...+++.+--..|
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~--~~~GlilisG~tGSGKTT~l-~all~~i~~---~~~~iitiEdp~E 119 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLE--KPHGIILVTGPTGSGKTTTL-YSALSELNT---PEKNIITVEDPVE 119 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHh--cCCCEEEEECCCCCcHHHHH-HHHHhhhCC---CCCeEEEECCCce
Confidence 4667775 4556666655443 12456899999999999863 334444432 2234555544444
No 404
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=91.02 E-value=1.3 Score=43.53 Aligned_cols=37 Identities=16% Similarity=0.020 Sum_probs=22.6
Q ss_pred hHHHHHHhhCCCCCC---CCEEEECCCCchHHHHhHHHHH
Q 010111 55 QVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIV 91 (518)
Q Consensus 55 Q~~a~~~~~~~~~~~---~~~li~apTGsGKT~~~~l~~~ 91 (518)
|.++...+...+..+ .-.|+.||.|+||+..+..-+-
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~ 63 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMAR 63 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 444444333333333 4589999999999987554333
No 405
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=90.98 E-value=1.4 Score=46.92 Aligned_cols=91 Identities=18% Similarity=0.315 Sum_probs=63.1
Q ss_pred HHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhc
Q 010111 91 VQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 170 (518)
Q Consensus 91 ~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (518)
+..+......+.+++|+++|+..+..+.+.+... ++++..++|+.+...+...+.. .-.
T Consensus 432 l~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~-----------------fr~ 490 (655)
T TIGR00631 432 LSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRD-----------------LRL 490 (655)
T ss_pred HHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHH-----------------Hhc
Confidence 3334333345668999999999999888888775 6788888887665544332211 123
Q ss_pred CCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHh
Q 010111 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (518)
Q Consensus 171 ~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~ 209 (518)
...+|+||| +.+.+ ++++..+++||+-+++..
T Consensus 491 G~i~VLV~t-----~~L~r--GfDiP~v~lVvi~Dadif 522 (655)
T TIGR00631 491 GEFDVLVGI-----NLLRE--GLDLPEVSLVAILDADKE 522 (655)
T ss_pred CCceEEEEc-----ChhcC--CeeeCCCcEEEEeCcccc
Confidence 457899999 44443 688899999998888764
No 406
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=90.91 E-value=0.44 Score=43.98 Aligned_cols=52 Identities=13% Similarity=-0.045 Sum_probs=34.2
Q ss_pred hhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc---CcHHHHHH
Q 010111 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL---PTRDLALQ 116 (518)
Q Consensus 62 ~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~---Pt~~La~Q 116 (518)
++..+..|.-++|.|+||+|||...+--+.+.+.+. +.+++|++ |..+++.+
T Consensus 6 ~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~---g~~vly~s~E~~~~~~~~r 60 (242)
T cd00984 6 LTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQ---GKPVLFFSLEMSKEQLLQR 60 (242)
T ss_pred hhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC---CCceEEEeCCCCHHHHHHH
Confidence 344455678899999999999986555455444441 44788886 44444443
No 407
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=90.88 E-value=0.14 Score=46.96 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=12.4
Q ss_pred EEEECCCCchHHHH
Q 010111 72 LCINSPTGSGKTLS 85 (518)
Q Consensus 72 ~li~apTGsGKT~~ 85 (518)
++|.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999985
No 408
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=90.85 E-value=0.28 Score=51.05 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=15.8
Q ss_pred CCEEEECCCCchHHHHhHH
Q 010111 70 RDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l 88 (518)
+-.|+.||.|+|||.++.+
T Consensus 39 hayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 39 NAYIFSGPRGVGKTSSARA 57 (563)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4478999999999987655
No 409
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=90.73 E-value=0.66 Score=47.72 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=15.4
Q ss_pred CCEEEECCCCchHHHHhHH
Q 010111 70 RDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l 88 (518)
+-.|+.||.|+|||.++..
T Consensus 37 hayLf~Gp~G~GKTt~Ar~ 55 (535)
T PRK08451 37 HAYLFSGLRGSGKTSSARI 55 (535)
T ss_pred eeEEEECCCCCcHHHHHHH
Confidence 3458999999999987554
No 410
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=90.67 E-value=0.48 Score=53.95 Aligned_cols=56 Identities=21% Similarity=0.276 Sum_probs=46.1
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhhc-ccCCccEEEEcCcHHHHHHHHHHHHH
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPTRDLALQVKDVFAA 123 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~~-~~~~~~~lil~Pt~~La~Q~~~~~~~ 123 (518)
.+.+++|.|-.|||||.+...-++..+... +..-..+|+++-|+.-+..+...+..
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~ 71 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRD 71 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHH
Confidence 478999999999999999888888887775 34556899999999988887766554
No 411
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=90.62 E-value=0.99 Score=42.14 Aligned_cols=47 Identities=17% Similarity=-0.000 Sum_probs=30.7
Q ss_pred HHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcC
Q 010111 60 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (518)
Q Consensus 60 ~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~P 109 (518)
+.++..+..|.=++|.|+||.|||..++-.+.+.+.+. +..++|++.
T Consensus 10 D~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~---~~~vly~Sl 56 (259)
T PF03796_consen 10 DRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNG---GYPVLYFSL 56 (259)
T ss_dssp HHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTT---SSEEEEEES
T ss_pred HHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhc---CCeEEEEcC
Confidence 33444445567789999999999987666555555442 357888864
No 412
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=90.60 E-value=1 Score=43.55 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=16.8
Q ss_pred CC-EEEECCCCchHHHHhHHHH
Q 010111 70 RD-LCINSPTGSGKTLSYALPI 90 (518)
Q Consensus 70 ~~-~li~apTGsGKT~~~~l~~ 90 (518)
.. +++.+|+|+|||.++...+
T Consensus 24 ~halL~~Gp~G~Gktt~a~~lA 45 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALALA 45 (325)
T ss_pred CceeeeeCCCCCCHHHHHHHHH
Confidence 44 8999999999998755433
No 413
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.58 E-value=0.72 Score=45.62 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=15.5
Q ss_pred CCEEEECCCCchHHHHhHH
Q 010111 70 RDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l 88 (518)
+.+++.||+|+|||..+..
T Consensus 40 ~~~L~~G~~G~GKt~~a~~ 58 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARI 58 (367)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999976443
No 414
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=90.53 E-value=3.4 Score=40.71 Aligned_cols=42 Identities=29% Similarity=0.215 Sum_probs=24.4
Q ss_pred EEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHH
Q 010111 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (518)
Q Consensus 73 li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q 116 (518)
++.++.|+|||.+....++..+...+ ....++++ |+..-+.+
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~-~~~~vi~~-~~~~~~~~ 42 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP-PGRRVIIA-STYRQARD 42 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS-S--EEEEE-ESSHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC-CCcEEEEe-cCHHHHHH
Confidence 47789999999988777777665542 12345555 55544443
No 415
>PRK10436 hypothetical protein; Provisional
Probab=90.43 E-value=0.57 Score=47.45 Aligned_cols=47 Identities=32% Similarity=0.565 Sum_probs=29.5
Q ss_pred HHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHh
Q 010111 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (518)
Q Consensus 42 ~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l 94 (518)
.|.++|+ .+.|.+.+..++. ..+.-+++++|||||||.+. ..+++.+
T Consensus 196 ~L~~LG~---~~~~~~~l~~~~~--~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 196 DLETLGM---TPAQLAQFRQALQ--QPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred CHHHcCc---CHHHHHHHHHHHH--hcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 3456665 3445555554442 13567899999999999873 3355554
No 416
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=90.40 E-value=0.13 Score=45.43 Aligned_cols=31 Identities=23% Similarity=0.182 Sum_probs=18.6
Q ss_pred hHHHHHHhhCCCCCCCCEEEECCCCchHHHH
Q 010111 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (518)
Q Consensus 55 Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~ 85 (518)
|..+..++.-++..++++++.+|+|+|||..
T Consensus 8 Qe~aKrAL~iAAaG~h~lLl~GppGtGKTml 38 (206)
T PF01078_consen 8 QEEAKRALEIAAAGGHHLLLIGPPGTGKTML 38 (206)
T ss_dssp THHHHHHHHHHHHCC--EEEES-CCCTHHHH
T ss_pred cHHHHHHHHHHHcCCCCeEEECCCCCCHHHH
Confidence 4444443332333578999999999999985
No 417
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=90.39 E-value=0.72 Score=44.80 Aligned_cols=64 Identities=20% Similarity=0.207 Sum_probs=39.6
Q ss_pred HHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHH
Q 010111 40 KVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (518)
Q Consensus 40 ~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~L 113 (518)
++.+.+.|+ +.+.+.+.+..++. .+.+++++++||+|||... -.++..+. ...+++++-.+.||
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~---~~~~ili~G~tGsGKTTll-~al~~~i~----~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVA---ARLAFLISGGTGSGKTTLL-SALLALVA----PDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHh---CCCeEEEECCCCCCHHHHH-HHHHccCC----CCCcEEEECCccee
Confidence 445556664 44556555554443 4689999999999999742 22333222 23367777777676
No 418
>PRK04195 replication factor C large subunit; Provisional
Probab=90.35 E-value=0.81 Score=47.07 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
.+.+++.||+|+|||..+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999998644
No 419
>PHA02244 ATPase-like protein
Probab=90.32 E-value=0.24 Score=48.00 Aligned_cols=24 Identities=17% Similarity=0.040 Sum_probs=18.9
Q ss_pred CCCCCCCCEEEECCCCchHHHHhH
Q 010111 64 GPGLFERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 64 ~~~~~~~~~li~apTGsGKT~~~~ 87 (518)
..+..+.++++.+|||+|||..+.
T Consensus 114 r~l~~~~PVLL~GppGtGKTtLA~ 137 (383)
T PHA02244 114 KIVNANIPVFLKGGAGSGKNHIAE 137 (383)
T ss_pred HHHhcCCCEEEECCCCCCHHHHHH
Confidence 334468899999999999997543
No 420
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=90.26 E-value=2.3 Score=44.80 Aligned_cols=79 Identities=23% Similarity=0.312 Sum_probs=58.4
Q ss_pred CCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeC
Q 010111 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (518)
Q Consensus 100 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~T 179 (518)
.+.++||+|+|+..++++++.+... ++.+..++|+.+..++...+.. .-....+|+|||
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~-----------------Fr~G~~~VLVaT 314 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNR-----------------FQKGQLEILVAT 314 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHH-----------------HHcCCCeEEEEe
Confidence 3457999999999999999888764 6889999999887665433221 223457999999
Q ss_pred ChHHHHhHhcCCCCCCCcccEEEEech
Q 010111 180 PGRLMDHINATRGFTLEHLCYLVVDET 206 (518)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vViDEa 206 (518)
+.+.. .+++.++++||.-+.
T Consensus 315 -----dv~ar--GIDip~V~~VInyd~ 334 (572)
T PRK04537 315 -----DVAAR--GLHIDGVKYVYNYDL 334 (572)
T ss_pred -----hhhhc--CCCccCCCEEEEcCC
Confidence 44444 578888999886554
No 421
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.26 E-value=0.37 Score=49.26 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=15.1
Q ss_pred CEEEECCCCchHHHHhHHH
Q 010111 71 DLCINSPTGSGKTLSYALP 89 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~l~ 89 (518)
-.++.||.|+|||.++.+-
T Consensus 40 ayLf~Gp~G~GKTtlAr~l 58 (486)
T PRK14953 40 AYIFAGPRGTGKTTIARIL 58 (486)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3578999999999875543
No 422
>PHA00012 I assembly protein
Probab=90.25 E-value=0.43 Score=45.03 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=20.7
Q ss_pred EEEECCCCchHHHHhHHHHHHHhhhc
Q 010111 72 LCINSPTGSGKTLSYALPIVQTLSNR 97 (518)
Q Consensus 72 ~li~apTGsGKT~~~~l~~~~~l~~~ 97 (518)
-++.|..|+|||+.++.-+...+.++
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcC
Confidence 47899999999998877666666554
No 423
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=90.19 E-value=0.85 Score=43.80 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=15.7
Q ss_pred CCEEEECCCCchHHHHhHH
Q 010111 70 RDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l 88 (518)
...|+.||.|+||+..+..
T Consensus 27 ha~Lf~G~~G~Gk~~~A~~ 45 (314)
T PRK07399 27 PAYLFAGPEGVGRKLAALC 45 (314)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5789999999999976544
No 424
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=90.16 E-value=1.1 Score=51.61 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=44.1
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
.++++|.|+-|||||.+..--++..+..+ ....++++++-|+.-|..+.+.+...+
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~-~~~~~i~~~t~t~~aa~em~~Ri~~~L 65 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNG-VPPSKILCLTYTKAAAAEMQNRVFDRL 65 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcC-CCCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 57899999999999998777666666554 334579999999999988877766544
No 425
>PF12846 AAA_10: AAA-like domain
Probab=90.02 E-value=0.52 Score=44.99 Aligned_cols=42 Identities=29% Similarity=0.332 Sum_probs=29.3
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHH
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~ 115 (518)
.+++|.|+||+|||.... .++..+... +..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~~---g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIRR---GPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHc---CCCEEEEcCCchHHH
Confidence 578999999999998766 444444432 356788867655544
No 426
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=89.98 E-value=0.76 Score=45.08 Aligned_cols=42 Identities=21% Similarity=0.065 Sum_probs=25.3
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHH
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~ 112 (518)
+..++|++|||||||.. +-.+++.+.... +..+++.+=...|
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~~~-~~~~IvtiEdp~E 190 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGETY-PDRKIVTYEDPIE 190 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHhcC-CCceEEEEecCch
Confidence 45789999999999976 344555554321 1234555433333
No 427
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=89.96 E-value=0.84 Score=41.70 Aligned_cols=55 Identities=13% Similarity=-0.008 Sum_probs=33.8
Q ss_pred CCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 65 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 65 ~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
-+..|..+++.+++|+|||..+..-+.+.+.+ +..+++++- -+...++.+....+
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~----g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD----GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhc----CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 34467889999999999998655444444433 235677763 33344554444443
No 428
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.93 E-value=1.4 Score=41.48 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=40.3
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcc--cCCccEEEEc-----------CcHHHHHHHHHHHHHhccccCceEEEe
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVL-----------PTRDLALQVKDVFAAIAPAVGLSVGLA 135 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~--~~~~~~lil~-----------Pt~~La~Q~~~~~~~~~~~~~~~v~~~ 135 (518)
++-+++.||+|+|||-. +-++.+.|.=+. ......+|=. -+--|+.++++.++.+.+..+.-|.++
T Consensus 177 NRliLlhGPPGTGKTSL-CKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSL-CKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eeEEEEeCCCCCChhHH-HHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 46678999999999963 444555543211 1111233333 344566677777777777666556555
Q ss_pred ec
Q 010111 136 VG 137 (518)
Q Consensus 136 ~g 137 (518)
..
T Consensus 256 ID 257 (423)
T KOG0744|consen 256 ID 257 (423)
T ss_pred eH
Confidence 54
No 429
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=89.86 E-value=1.9 Score=46.85 Aligned_cols=38 Identities=16% Similarity=-0.033 Sum_probs=24.0
Q ss_pred cchhhHHHHHHhhCCCC--CCCCEEEECCCCchHHHHhHH
Q 010111 51 LFPVQVAVWQETIGPGL--FERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~--~~~~~li~apTGsGKT~~~~l 88 (518)
+--.|.+-+..++..+. ...|+++.||+|+|||..+-.
T Consensus 183 ~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred cccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHH
Confidence 44445554444443221 246899999999999987443
No 430
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=89.66 E-value=0.84 Score=49.09 Aligned_cols=71 Identities=20% Similarity=0.175 Sum_probs=54.7
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcc
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 126 (518)
.+++-|.+|+... ...++|.|..|||||.+..--+...+.........++.++=|+..|.++.+.+..+..
T Consensus 2 ~Ln~~Q~~av~~~------~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP------DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC------CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5788899985432 5788999999999999866655555555434445689999999999999999888875
No 431
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=89.57 E-value=2 Score=47.55 Aligned_cols=86 Identities=15% Similarity=0.240 Sum_probs=68.3
Q ss_pred cCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEe
Q 010111 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (518)
Q Consensus 99 ~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~ 178 (518)
.++.++.|+.|..+-..++.+.++.+.+ ..++++.+|.-+..+..+-+. ....+..||+||
T Consensus 801 ~RgGQvfYv~NrV~~Ie~~~~~L~~LVP--EarI~vaHGQM~e~eLE~vM~-----------------~F~~g~~dVLv~ 861 (1139)
T COG1197 801 LRGGQVFYVHNRVESIEKKAERLRELVP--EARIAVAHGQMRERELEEVML-----------------DFYNGEYDVLVC 861 (1139)
T ss_pred hcCCEEEEEecchhhHHHHHHHHHHhCC--ceEEEEeecCCCHHHHHHHHH-----------------HHHcCCCCEEEE
Confidence 3567999999999999999999999987 477899999888666544332 234567899999
Q ss_pred CChHHHHhHhcCCCCCCCcccEEEEechhHhh
Q 010111 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210 (518)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~ 210 (518)
| -.+.+ ++++.+...+|||-||++.
T Consensus 862 T-----TIIEt--GIDIPnANTiIIe~AD~fG 886 (1139)
T COG1197 862 T-----TIIET--GIDIPNANTIIIERADKFG 886 (1139)
T ss_pred e-----eeeec--CcCCCCCceEEEecccccc
Confidence 9 34444 5788899999999999884
No 432
>PRK12608 transcription termination factor Rho; Provisional
Probab=89.51 E-value=1.5 Score=42.71 Aligned_cols=42 Identities=17% Similarity=0.074 Sum_probs=28.4
Q ss_pred hhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhh
Q 010111 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (518)
Q Consensus 53 ~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~ 96 (518)
++-.++++.+++ +-.|+..+|.||.|+|||..... +.+.+..
T Consensus 118 ~~~~RvID~l~P-iGkGQR~LIvG~pGtGKTTLl~~-la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAP-IGKGQRGLIVAPPRAGKTVLLQQ-IAAAVAA 159 (380)
T ss_pred chhHhhhhheee-cCCCceEEEECCCCCCHHHHHHH-HHHHHHh
Confidence 445566666553 34689999999999999986333 4444443
No 433
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=89.36 E-value=0.55 Score=45.92 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=20.0
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhh
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLS 95 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~ 95 (518)
.+..++|++|||||||... -.++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 4678999999999999863 33555443
No 434
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=89.26 E-value=1.6 Score=41.36 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=34.3
Q ss_pred CEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc--CcHHHHHHHHHHHHHhccccCceEEE-eecCCc
Q 010111 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSVGL-AVGQSS 140 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~--Pt~~La~Q~~~~~~~~~~~~~~~v~~-~~g~~~ 140 (518)
-+++++-.|+|||.+..-. ..++.+ .+.++++.+ .-|+=|. ++++.+++..|..+.. -.|+.+
T Consensus 141 Vil~vGVNG~GKTTTIaKL-A~~l~~---~g~~VllaA~DTFRAaAi---EQL~~w~er~gv~vI~~~~G~Dp 206 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKL-AKYLKQ---QGKSVLLAAGDTFRAAAI---EQLEVWGERLGVPVISGKEGADP 206 (340)
T ss_pred EEEEEecCCCchHhHHHHH-HHHHHH---CCCeEEEEecchHHHHHH---HHHHHHHHHhCCeEEccCCCCCc
Confidence 4678999999999984442 223333 244566654 2344443 2344444445666655 234443
No 435
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=89.22 E-value=0.44 Score=50.54 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=37.4
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHH
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 123 (518)
.++++.||||||||..+++|-+-.+. ..++|+=|--|+........++
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~------gS~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFK------GSVIALDVKGELFELTSRARKA 187 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCC------CCEEEEeCCchHHHHHHHHHHh
Confidence 58999999999999999988765421 2688888999988766555544
No 436
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=89.22 E-value=1.6 Score=40.05 Aligned_cols=83 Identities=16% Similarity=0.264 Sum_probs=60.2
Q ss_pred eeEEEccccCChHHHHHHHHHHhcC----CceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhh-cc-cCCCCC
Q 010111 360 IKIKEYSGLQRQSVRSKTLKAFREG----KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR-TA-RAGQLG 433 (518)
Q Consensus 360 ~~v~~~hg~~~~~~r~~~~~~f~~g----~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR-~g-R~g~~g 433 (518)
+.+..++++.+... -.+.++ ...|+|+=+.++||+-++++.+......+...+++.|| || -| |.|-.+
T Consensus 111 ~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~Qm-gRwFGYR~gY~d 184 (239)
T PF10593_consen 111 IEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQM-GRWFGYRPGYED 184 (239)
T ss_pred ceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHH-hhcccCCccccc
Confidence 67777776655432 223333 37899999999999999999999999999989999998 33 22 555667
Q ss_pred cEEEEeecchhHHHH
Q 010111 434 RCFTLLHKDEVCLVK 448 (518)
Q Consensus 434 ~~~~~~~~~e~~~~~ 448 (518)
.|-++++++-...++
T Consensus 185 l~Ri~~~~~l~~~f~ 199 (239)
T PF10593_consen 185 LCRIYMPEELYDWFR 199 (239)
T ss_pred ceEEecCHHHHHHHH
Confidence 788888765553333
No 437
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=89.16 E-value=0.28 Score=46.18 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=29.0
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHH
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~L 113 (518)
.+.+++++|+||||||... -.++..+... ..+++++-.+.|+
T Consensus 126 ~~~~ili~G~tGSGKTT~l-~all~~i~~~---~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLL-NALLEEIPPE---DERIVTIEDPPEL 167 (270)
T ss_dssp TTEEEEEEESTTSSHHHHH-HHHHHHCHTT---TSEEEEEESSS-S
T ss_pred cceEEEEECCCccccchHH-HHHhhhcccc---ccceEEeccccce
Confidence 4789999999999999863 4445544432 2467777777666
No 438
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=89.13 E-value=0.89 Score=46.55 Aligned_cols=47 Identities=26% Similarity=0.429 Sum_probs=29.0
Q ss_pred HHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHh
Q 010111 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (518)
Q Consensus 42 ~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l 94 (518)
.|.++|| .+-|.+.+..++.. .+.-++++||||||||... ..++..+
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~~--~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIRR--PHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHhc--CCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 4556675 45566665554431 1234789999999999863 3345444
No 439
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=89.09 E-value=0.96 Score=46.49 Aligned_cols=63 Identities=11% Similarity=0.060 Sum_probs=42.1
Q ss_pred HHHhhC-CCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 59 ~~~~~~-~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
++.++. -+..|+.++|.+|+|+|||..++--+.+.+.+. +-+++|++- -+-..++.+.+..+.
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~---ge~~lyvs~-eE~~~~l~~~~~~~G 73 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHF---DEPGVFVTF-EESPQDIIKNARSFG 73 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC---CCCEEEEEE-ecCHHHHHHHHHHcC
Confidence 344443 344678999999999999987666566555441 236788874 355666777776664
No 440
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=89.01 E-value=1.3 Score=50.43 Aligned_cols=80 Identities=10% Similarity=0.276 Sum_probs=59.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcCC-Ccee---EEEccccCChHHHHHHHHHHhcCCceEEEEcCccc-cCCC-CC-CC
Q 010111 332 EEKCIVFTSSVESTHRLCTLLNHFGE-LRIK---IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT-RGMD-VE-GV 404 (518)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~~---v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~-~GiD-ip-~v 404 (518)
+.+++|.+||+.-+..+++.+..... .++. +..+||+++..++...++.+.+|..+|||+|...- ..++ +. .+
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~ 200 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKF 200 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCC
Confidence 57899999999999999988876542 1222 44689999999999999999999999999997421 1111 12 57
Q ss_pred CEEEEcC
Q 010111 405 NNVVNYD 411 (518)
Q Consensus 405 ~~VI~~~ 411 (518)
+++|.-+
T Consensus 201 ~~iVvDE 207 (1171)
T TIGR01054 201 DFIFVDD 207 (1171)
T ss_pred CEEEEeC
Confidence 7777544
No 441
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=88.72 E-value=0.84 Score=41.54 Aligned_cols=54 Identities=15% Similarity=0.013 Sum_probs=36.6
Q ss_pred CCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
+..|..+++.+++|+|||..++--+.+.+.+ +.+++|++.. +-..|+.+.+..+
T Consensus 13 i~~g~~~li~G~~G~GKt~~~~~~~~~~~~~----g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 13 FPEGHVIVVIGEYGTGKTTFSLQFLYQGLKN----GEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEECC-CCHHHHHHHHHHc
Confidence 3357788999999999997655445544443 3367787644 4566777777665
No 442
>PRK13531 regulatory ATPase RavA; Provisional
Probab=88.65 E-value=0.31 Score=49.05 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=28.9
Q ss_pred hhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhH
Q 010111 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 53 ~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~ 87 (518)
.-|.+++..++..+..+.++++.+|+|+|||..+-
T Consensus 23 ~gre~vI~lll~aalag~hVLL~GpPGTGKT~LAr 57 (498)
T PRK13531 23 YERSHAIRLCLLAALSGESVFLLGPPGIAKSLIAR 57 (498)
T ss_pred cCcHHHHHHHHHHHccCCCEEEECCCChhHHHHHH
Confidence 45777777777777789999999999999998643
No 443
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=88.44 E-value=0.72 Score=41.29 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=22.2
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcC
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~P 109 (518)
..+++|.|+||||||.+....+...+.........+.++=|
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~ 78 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDP 78 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-T
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcC
Confidence 45899999999999987655444444432223344444433
No 444
>PHA00350 putative assembly protein
Probab=88.35 E-value=1.1 Score=44.18 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=18.7
Q ss_pred EEEECCCCchHHHHhHH-HHHHHhhhc
Q 010111 72 LCINSPTGSGKTLSYAL-PIVQTLSNR 97 (518)
Q Consensus 72 ~li~apTGsGKT~~~~l-~~~~~l~~~ 97 (518)
.++.|..|||||+.++. -++..+..+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~G 30 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDG 30 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCC
Confidence 47899999999997665 355555443
No 445
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=88.24 E-value=0.91 Score=49.66 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=16.3
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
.+..+++.+|+|+|||..+-
T Consensus 346 ~~~~lll~GppG~GKT~lAk 365 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGK 365 (775)
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 45679999999999997643
No 446
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=88.22 E-value=3.9 Score=36.36 Aligned_cols=77 Identities=16% Similarity=0.306 Sum_probs=53.9
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcCC-CceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc-----cccC-CCCCC
Q 010111 331 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTRG-MDVEG 403 (518)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~G-iDip~ 403 (518)
.+.++||.++++..+....+.+..... .+..+..++|+.+..+....++ +..+|+|+|.- +..+ .++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 456899999999999988887766532 3477888999988765543332 67899999952 2222 56677
Q ss_pred CCEEEEcC
Q 010111 404 VNNVVNYD 411 (518)
Q Consensus 404 v~~VI~~~ 411 (518)
++++|.-+
T Consensus 144 l~~lIvDE 151 (203)
T cd00268 144 VKYLVLDE 151 (203)
T ss_pred CCEEEEeC
Confidence 88777544
No 447
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=88.21 E-value=0.73 Score=41.01 Aligned_cols=38 Identities=18% Similarity=0.416 Sum_probs=22.7
Q ss_pred EEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHH
Q 010111 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (518)
Q Consensus 72 ~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~ 112 (518)
+++++|||||||... ..++..+... .+.+++.+--..+
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~~--~~~~i~t~e~~~E 41 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINKN--KTHHILTIEDPIE 41 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhhc--CCcEEEEEcCCcc
Confidence 689999999999863 3344444332 1234555544434
No 448
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=88.09 E-value=4.5 Score=34.89 Aligned_cols=45 Identities=9% Similarity=0.011 Sum_probs=29.3
Q ss_pred EEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHH
Q 010111 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (518)
Q Consensus 72 ~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 123 (518)
++|.+++|||||..+.-.+.. .+.+++|++....+-..+.+.+.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-------~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-------LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-------cCCCeEEEEccCcCCHHHHHHHHH
Confidence 588999999999864433322 233788887766665555554444
No 449
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=87.97 E-value=0.58 Score=44.93 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=16.4
Q ss_pred CCCCEEEECCCCchHHHH
Q 010111 68 FERDLCINSPTGSGKTLS 85 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (518)
.+.++++.+|||||||..
T Consensus 143 ~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTF 160 (308)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578999999999999975
No 450
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=87.82 E-value=1.1 Score=47.09 Aligned_cols=47 Identities=32% Similarity=0.479 Sum_probs=29.9
Q ss_pred HHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHh
Q 010111 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (518)
Q Consensus 42 ~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l 94 (518)
.|.++|| .+.|.+.+..++.. .+..++++||||||||.+. ..++..+
T Consensus 294 ~l~~lg~---~~~~~~~l~~~~~~--~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 294 DIDKLGF---EPDQKALFLEAIHK--PQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred CHHHcCC---CHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 3567776 34555555544431 2456789999999999873 3455554
No 451
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=87.80 E-value=0.82 Score=41.06 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=27.3
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCc
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt 110 (518)
.|.-+.+.+|+|+|||..++-.+.+.... +.+++|+.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~----g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ----GKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEECC
Confidence 46778999999999998766555444332 3467777653
No 452
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=87.78 E-value=3.7 Score=39.03 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=27.6
Q ss_pred HHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhccc
Q 010111 183 LMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 227 (518)
Q Consensus 183 l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~ 227 (518)
++..+.+ +....+.--+.|+||+|........-.+-++++....
T Consensus 124 lL~~L~~-~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs 167 (408)
T KOG2228|consen 124 LLEALKK-GDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQS 167 (408)
T ss_pred HHHHHhc-CCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhh
Confidence 3444444 2222223347899999988777777777777776553
No 453
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=87.69 E-value=1 Score=42.58 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=16.7
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 010111 69 ERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l 88 (518)
+.++++.||+|||||.++..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALR 77 (284)
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 45899999999999987643
No 454
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=87.67 E-value=3.1 Score=37.69 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=14.8
Q ss_pred CCCEEEECCCCchHHHH
Q 010111 69 ERDLCINSPTGSGKTLS 85 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~ 85 (518)
...+++.||.|+|||..
T Consensus 20 ~~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL 36 (234)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CcEEEEEcCCcCCHHHH
Confidence 46788999999999984
No 455
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=87.56 E-value=3.3 Score=44.85 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=16.8
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 010111 69 ERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l 88 (518)
..++++.||+|+|||..+-.
T Consensus 207 ~~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 57899999999999986443
No 456
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=87.55 E-value=1 Score=46.25 Aligned_cols=63 Identities=19% Similarity=0.111 Sum_probs=42.9
Q ss_pred HHHHHhhC-CCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 57 AVWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 57 ~a~~~~~~-~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
..++.++. -+..|.-+++.+|+|+|||...+--+.+.+.+ +.+++|++ .-|-..|+.+.+..+
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~----ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN----KERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEE-eeCCHHHHHHHHHHc
Confidence 34444443 24456789999999999998755555544433 34788887 556677888887776
No 457
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=87.55 E-value=2 Score=43.58 Aligned_cols=54 Identities=19% Similarity=0.106 Sum_probs=34.5
Q ss_pred CCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
+..|.-+++.+++|+|||...+-.+.+ +.. .+.+++|+..- +-..|+.....++
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~-~a~---~g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQ-LAK---NQMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHH-HHh---cCCcEEEEECc-CCHHHHHHHHHHc
Confidence 345677899999999999865543333 322 23368888754 4456666555554
No 458
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=87.54 E-value=1.5 Score=46.38 Aligned_cols=54 Identities=22% Similarity=0.172 Sum_probs=35.8
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHH--HHHHHHHHHHHhc
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD--LALQVKDVFAAIA 125 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~--La~Q~~~~~~~~~ 125 (518)
...+++|.|+||+|||..+..-+.+.+.. +..++++=|-.. |...+...++..+
T Consensus 175 ~~~H~lv~G~TGsGKT~l~~~l~~q~i~~----g~~viv~DpKgD~~l~~~~~~~~~~~G 230 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLAELLITQDIRR----GDVVIVIDPKGDADLKRRMRAEAKRAG 230 (634)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCCCchHHHHHHHHHHHHhC
Confidence 35789999999999998765544444443 235677767654 6555666665553
No 459
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=87.54 E-value=2.7 Score=42.18 Aligned_cols=73 Identities=22% Similarity=0.314 Sum_probs=55.3
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcC-CCcEEEeC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVAT 179 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Iiv~T 179 (518)
.+.++|.+.++.=++-+++.+.+. +++++.++|+.+...+...+ +.+.. ..+|+|||
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL------------------~~fr~~t~dIlVaT 574 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENAL------------------ADFREGTGDILVAT 574 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHH------------------HHHHhcCCCEEEEe
Confidence 457999999999888888877775 79999999999877664432 23333 57999999
Q ss_pred ChHHHHhHhcCCCCCCCcccEEE
Q 010111 180 PGRLMDHINATRGFTLEHLCYLV 202 (518)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vV 202 (518)
+... +++++.++++||
T Consensus 575 -----DvAg--RGIDIpnVSlVi 590 (673)
T KOG0333|consen 575 -----DVAG--RGIDIPNVSLVI 590 (673)
T ss_pred -----cccc--cCCCCCccceee
Confidence 3333 357888898887
No 460
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=87.42 E-value=1.2 Score=40.20 Aligned_cols=46 Identities=20% Similarity=0.104 Sum_probs=29.9
Q ss_pred HHHhhC-CCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc
Q 010111 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (518)
Q Consensus 59 ~~~~~~-~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~ 108 (518)
++.++. -+..|.-++|.+++|+|||..++-.+.+.... +.+++|+.
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~----g~~v~yi~ 54 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ----GKKVAYID 54 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc----CCeEEEEE
Confidence 344453 34456778999999999998766555443322 34678873
No 461
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=87.41 E-value=0.57 Score=43.62 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=25.3
Q ss_pred EEEECCCCchHHHHhHHHHHHHhhhcc---cCCccEEEEcCcHHHH
Q 010111 72 LCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLA 114 (518)
Q Consensus 72 ~li~apTGsGKT~~~~l~~~~~l~~~~---~~~~~~lil~Pt~~La 114 (518)
.+|-|||||||+-. +.+|.... ...-.|++++|.+...
T Consensus 90 ~~VYGPTG~GKSqL-----lRNLis~~lI~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQL-----LRNLISCQLIQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHHH-----HHHhhhcCcccCCCCceEEECCCCCCC
Confidence 57899999999973 44443321 1233699999987554
No 462
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=87.38 E-value=0.35 Score=47.91 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=21.4
Q ss_pred hHHHHHHhhCCCCCCCCEEEECCCCchHHHH
Q 010111 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (518)
Q Consensus 55 Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~ 85 (518)
|..|-..+.-...-|+|+++.+|+|||||+.
T Consensus 184 Q~~AKrAleiAAAGgHnLl~~GpPGtGKTml 214 (490)
T COG0606 184 QEQAKRALEIAAAGGHNLLLVGPPGTGKTML 214 (490)
T ss_pred cHHHHHHHHHHHhcCCcEEEecCCCCchHHh
Confidence 4444333332334579999999999999984
No 463
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.22 E-value=0.37 Score=46.93 Aligned_cols=18 Identities=44% Similarity=0.641 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchHHHHh
Q 010111 69 ERDLCINSPTGSGKTLSY 86 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (518)
..|+|+.+|||||||+.+
T Consensus 226 KSNvLllGPtGsGKTlla 243 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLA 243 (564)
T ss_pred cccEEEECCCCCchhHHH
Confidence 468999999999999853
No 464
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=87.19 E-value=9.8 Score=30.58 Aligned_cols=80 Identities=19% Similarity=0.293 Sum_probs=53.9
Q ss_pred CCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeC
Q 010111 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (518)
Q Consensus 100 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~T 179 (518)
.+.++||.+++..-++++.+.+.. .+..+..++|+.+......... ........|+++|
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~-----------------~f~~~~~~ili~t 85 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRK----PGIKVAALHGDGSQEEREEVLK-----------------DFREGEIVVLVAT 85 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh----cCCcEEEEECCCCHHHHHHHHH-----------------HHHcCCCcEEEEc
Confidence 345799999999999988888877 3677888888877544432211 1122346789988
Q ss_pred ChHHHHhHhcCCCCCCCcccEEEEechh
Q 010111 180 PGRLMDHINATRGFTLEHLCYLVVDETD 207 (518)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vViDEah 207 (518)
.- +. .++++...+.+|+....
T Consensus 86 ~~-----~~--~G~d~~~~~~vi~~~~~ 106 (131)
T cd00079 86 DV-----IA--RGIDLPNVSVVINYDLP 106 (131)
T ss_pred Ch-----hh--cCcChhhCCEEEEeCCC
Confidence 32 22 34667778888877764
No 465
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=87.12 E-value=1.7 Score=37.97 Aligned_cols=29 Identities=31% Similarity=0.468 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhhc
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~~ 97 (518)
.++.+++.|+.|+|||.. +-.++..+...
T Consensus 23 ~~~~~ll~G~~G~GKT~l-l~~~~~~~~~~ 51 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSL-LRALLDRLAER 51 (185)
T ss_dssp ----EEE-B-TTSSHHHH-HHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHHHhc
Confidence 357899999999999975 33355555543
No 466
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=86.92 E-value=4.1 Score=41.17 Aligned_cols=77 Identities=25% Similarity=0.272 Sum_probs=55.8
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
..++||.|+++.-+..+.+.+... ++++..++|+.+..++..-+. .......+|+|||
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~----g~~v~~lhg~~~~~~R~~~l~-----------------~F~~g~~~vLVaT- 312 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAAD----GHRVGLLTGDVAQKKRLRILE-----------------EFTRGDLDILVAT- 312 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhC----CCcEEEecCCCChhHHHHHHH-----------------HHHcCCCcEEEEe-
Confidence 347999999999999888887754 788999999887666543321 1223568999999
Q ss_pred hHHHHhHhcCCCCCCCcccEEEEec
Q 010111 181 GRLMDHINATRGFTLEHLCYLVVDE 205 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vViDE 205 (518)
+.+.+ ++++.++++||.-+
T Consensus 313 ----dv~~r--GiDip~v~~VI~~d 331 (423)
T PRK04837 313 ----DVAAR--GLHIPAVTHVFNYD 331 (423)
T ss_pred ----chhhc--CCCccccCEEEEeC
Confidence 34443 57888898887543
No 467
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=86.89 E-value=1.4 Score=43.54 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=33.1
Q ss_pred CCHHHHHHHHhCCCCccchhhHHH-H---HHhhCCCCCCCCEEEECCCCchHHHHhHH
Q 010111 35 LDPRLKVALQNMGISSLFPVQVAV-W---QETIGPGLFERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 35 l~~~~~~~l~~~g~~~~~~~Q~~a-~---~~~~~~~~~~~~~li~apTGsGKT~~~~l 88 (518)
.++++--.|...||. |..+..++ + ...++.+..+.|++..+|+|+|||..|..
T Consensus 172 ~dEWid~LlrSiG~~-P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 172 LEEWIDVLIRSIGYE-PEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred HHHHHHHHHHhcCCC-cccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHH
Confidence 445666667778984 33332222 1 12223344679999999999999966554
No 468
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=86.87 E-value=1.7 Score=38.32 Aligned_cols=58 Identities=22% Similarity=0.137 Sum_probs=34.3
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhhcc------cCCccEEEEcCcHHHHHHHHHHHHHhcc
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRA------VRCLRALVVLPTRDLALQVKDVFAAIAP 126 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~~~------~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 126 (518)
.|.-+++.||+|+|||...+-.+...+.... ....+++++..-.. ..++.+.+..+..
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 4667899999999999875554544443211 13457888865544 5566777766543
No 469
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=86.74 E-value=4.8 Score=41.14 Aligned_cols=75 Identities=23% Similarity=0.235 Sum_probs=54.7
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
..++||.|+++.-+..+++.+... ++++..++|+.+..++...+.. ......+|+|||
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~-----------------F~~g~~~iLVaT- 302 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKD----GIRSAAIHGNKSQGARTRALAD-----------------FKSGDIRVLVAT- 302 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHC----CCCEEEEECCCCHHHHHHHHHH-----------------HHcCCCcEEEEc-
Confidence 347999999999999888888664 6888999999887665433211 223457999999
Q ss_pred hHHHHhHhcCCCCCCCcccEEEE
Q 010111 181 GRLMDHINATRGFTLEHLCYLVV 203 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vVi 203 (518)
+.+.. .+++.++++||.
T Consensus 303 ----dv~~r--GiDip~v~~VI~ 319 (456)
T PRK10590 303 ----DIAAR--GLDIEELPHVVN 319 (456)
T ss_pred ----cHHhc--CCCcccCCEEEE
Confidence 44443 578888888873
No 470
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=86.70 E-value=3.3 Score=40.18 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=15.1
Q ss_pred CCEEEECCCCchHHHHhHH
Q 010111 70 RDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l 88 (518)
+-.++.||.|+|||..+..
T Consensus 29 ha~Lf~G~~G~gk~~~a~~ 47 (329)
T PRK08058 29 HAYLFEGAKGTGKKATALW 47 (329)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3458999999999976544
No 471
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=86.63 E-value=1.1 Score=48.44 Aligned_cols=72 Identities=21% Similarity=0.199 Sum_probs=52.4
Q ss_pred CCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 47 g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
.+...+|-|.+|+..-. +...+.+++|+|+|||-.+.- ++..+..+ .+..+++|++.+..-.+|..+.+.++
T Consensus 735 n~v~ft~~qveai~sg~----qpgltmvvgppgtgktd~avq-il~~lyhn-~p~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 735 NQVKFTPTQVEAILSGM----QPGLTMVVGPPGTGKTDVAVQ-ILSVLYHN-SPNQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred chhccCHHHHHHHHhcC----CCCceeeecCCCCCCcchhhh-hhhhhhhc-CCCcceEEEEecccchhHHHHHHHhc
Confidence 44566888988853322 357889999999999987554 44444443 45678999999988888888776654
No 472
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=86.61 E-value=0.91 Score=31.50 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=14.9
Q ss_pred CCCEEEECCCCchHHHH
Q 010111 69 ERDLCINSPTGSGKTLS 85 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~ 85 (518)
|...++.+|+|+|||..
T Consensus 23 g~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL 39 (62)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45799999999999975
No 473
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.61 E-value=1.3 Score=42.47 Aligned_cols=57 Identities=23% Similarity=0.218 Sum_probs=37.2
Q ss_pred CccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHH
Q 010111 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (518)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~L 113 (518)
..+++.|..-+..++. .+++++++++||||||.. +.+++..+- +..+++.+=-|.++
T Consensus 126 gt~~~~~~ayL~~~ie---~~~siii~G~t~sGKTt~-lnall~~Ip----~~~rivtIEdt~E~ 182 (312)
T COG0630 126 GTISPEQAAYLWLAIE---ARKSIIICGGTASGKTTL-LNALLDFIP----PEERIVTIEDTPEL 182 (312)
T ss_pred CCCCHHHHHHHHHHHH---cCCcEEEECCCCCCHHHH-HHHHHHhCC----chhcEEEEeccccc
Confidence 3566666655444443 589999999999999974 444443332 23467777777665
No 474
>PRK10865 protein disaggregation chaperone; Provisional
Probab=86.58 E-value=1 Score=49.62 Aligned_cols=18 Identities=33% Similarity=0.379 Sum_probs=15.2
Q ss_pred CEEEECCCCchHHHHhHH
Q 010111 71 DLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~l 88 (518)
.+++.||||+|||..+-.
T Consensus 600 ~~Lf~Gp~G~GKT~lA~a 617 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKA 617 (857)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 578999999999997544
No 475
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=86.57 E-value=0.84 Score=42.85 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=16.6
Q ss_pred CCCCEEEECCCCchHHHH
Q 010111 68 FERDLCINSPTGSGKTLS 85 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (518)
.++.++++||+|+|||..
T Consensus 32 ~~~pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSL 49 (272)
T ss_dssp CTEEEEEESSTTSSHHHH
T ss_pred cCCcEEEECCCCCchhHH
Confidence 578999999999999986
No 476
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=86.56 E-value=2.3 Score=46.84 Aligned_cols=35 Identities=17% Similarity=0.010 Sum_probs=23.4
Q ss_pred hhhHHHHHHhhCCCC------C--C---CCEEEECCCCchHHHHhH
Q 010111 53 PVQVAVWQETIGPGL------F--E---RDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 53 ~~Q~~a~~~~~~~~~------~--~---~~~li~apTGsGKT~~~~ 87 (518)
-.|.+|+..+...+. . + ..+++.||||+|||..+-
T Consensus 569 ~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~ 614 (852)
T TIGR03345 569 IGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETAL 614 (852)
T ss_pred cChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHH
Confidence 467777766543321 1 1 137899999999998754
No 477
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=86.43 E-value=0.82 Score=48.37 Aligned_cols=59 Identities=19% Similarity=0.073 Sum_probs=41.8
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeec
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g 137 (518)
..++++.||||+|||..+++|-+-. . +..++|+=|..|+........++. |.+|.++.-
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL~--~----~gS~VV~DpKgEl~~~Ta~~R~~~----G~~V~vfdP 282 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTALK--W----GGPLVVLDPSTEVAPMVSEHRRDA----GREVIVLDP 282 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhhc--C----CCCEEEEeCcHHHHHHHHHHHHHC----CCeEEEEeC
Confidence 3688999999999999999996532 1 225788889999887665555443 555555443
No 478
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=86.37 E-value=1.1 Score=40.84 Aligned_cols=44 Identities=23% Similarity=0.402 Sum_probs=31.8
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHH
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~ 115 (518)
++++.|.|.||||||..... +++.+.+ ..+..++|+=|.-|-+.
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~-ll~~l~~--~~~~~~ii~D~~GEY~~ 66 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKV-LLEELLK--KKGAKVIIFDPHGEYAS 66 (229)
T ss_pred cceEEEECCCCCCHHHHHHH-HHHHHHh--cCCCCEEEEcCCCcchh
Confidence 58999999999999987444 5555553 23457888888766543
No 479
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=86.37 E-value=1.1 Score=43.78 Aligned_cols=43 Identities=14% Similarity=0.265 Sum_probs=26.9
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHH
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~L 113 (518)
.+..++++||||||||... -.++..+... ...+++.+-...|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~~--~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINKN--AAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCcC--CCCEEEEEcCChhh
Confidence 3578899999999999863 3344444322 22356666554454
No 480
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=86.36 E-value=4.7 Score=40.89 Aligned_cols=75 Identities=19% Similarity=0.296 Sum_probs=55.1
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
..++||.|++++-+..+++.+... ++.+..++|+.+..++...+.. .-....+|+|||
T Consensus 245 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~R~~~l~~-----------------f~~G~~~vLVaT- 302 (434)
T PRK11192 245 VTRSIVFVRTRERVHELAGWLRKA----GINCCYLEGEMVQAKRNEAIKR-----------------LTDGRVNVLVAT- 302 (434)
T ss_pred CCeEEEEeCChHHHHHHHHHHHhC----CCCEEEecCCCCHHHHHHHHHH-----------------HhCCCCcEEEEc-
Confidence 457999999999999988888763 7889999998877666443221 223457999999
Q ss_pred hHHHHhHhcCCCCCCCcccEEEE
Q 010111 181 GRLMDHINATRGFTLEHLCYLVV 203 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vVi 203 (518)
+.+.. ++++.++++||.
T Consensus 303 ----d~~~~--GiDip~v~~VI~ 319 (434)
T PRK11192 303 ----DVAAR--GIDIDDVSHVIN 319 (434)
T ss_pred ----ccccc--CccCCCCCEEEE
Confidence 33333 577888888884
No 481
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=86.30 E-value=5.3 Score=37.99 Aligned_cols=92 Identities=14% Similarity=0.262 Sum_probs=60.6
Q ss_pred HHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCch-HHHHHHhhcCCccccCccCCchhHHHhhc
Q 010111 92 QTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSI-ADEISELIKRPKLEAGICYDPEDVLQELQ 170 (518)
Q Consensus 92 ~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (518)
..+.+....+..+++.+|+.+.++|.++.++..... ..+..+++.... .+....+. .
T Consensus 296 ~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~--~~i~~Vhs~d~~R~EkV~~fR--------------------~ 353 (441)
T COG4098 296 RWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPK--ETIASVHSEDQHRKEKVEAFR--------------------D 353 (441)
T ss_pred HHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCc--cceeeeeccCccHHHHHHHHH--------------------c
Confidence 334443344567999999999999999999765443 444555544432 23332221 2
Q ss_pred CCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhH
Q 010111 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212 (518)
Q Consensus 171 ~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~ 212 (518)
...+|+|+| ..+++ ++.+.++++.|++--|++...
T Consensus 354 G~~~lLiTT-----TILER--GVTfp~vdV~Vlgaeh~vfTe 388 (441)
T COG4098 354 GKITLLITT-----TILER--GVTFPNVDVFVLGAEHRVFTE 388 (441)
T ss_pred CceEEEEEe-----ehhhc--ccccccceEEEecCCcccccH
Confidence 346899999 34554 578889999999998877554
No 482
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=86.29 E-value=1.6 Score=39.66 Aligned_cols=47 Identities=23% Similarity=0.138 Sum_probs=30.2
Q ss_pred HHHhhC-CCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcC
Q 010111 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (518)
Q Consensus 59 ~~~~~~-~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~P 109 (518)
++.++. .+..|.-+++.+++|+|||..++-.+.+.+.. +.+++|+.-
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~----~~~v~yi~~ 59 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKN----GKKVIYIDT 59 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEEC
Confidence 334442 33456778999999999998766555554433 336777753
No 483
>PTZ00110 helicase; Provisional
Probab=86.22 E-value=4.8 Score=42.12 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=55.2
Q ss_pred CCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeC
Q 010111 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (518)
Q Consensus 100 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~T 179 (518)
.+.++||.|+++.-+..+.+.++.. ++.+..++|+.+..++...+. .......+|+|||
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~----g~~~~~ihg~~~~~eR~~il~-----------------~F~~G~~~ILVaT 434 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLD----GWPALCIHGDKKQEERTWVLN-----------------EFKTGKSPIMIAT 434 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHc----CCcEEEEECCCcHHHHHHHHH-----------------HHhcCCCcEEEEc
Confidence 3458999999999999888887653 678888999887665533221 1223457899999
Q ss_pred ChHHHHhHhcCCCCCCCcccEEEEe
Q 010111 180 PGRLMDHINATRGFTLEHLCYLVVD 204 (518)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vViD 204 (518)
+.+.+ .+++.++++||.-
T Consensus 435 -----dv~~r--GIDi~~v~~VI~~ 452 (545)
T PTZ00110 435 -----DVASR--GLDVKDVKYVINF 452 (545)
T ss_pred -----chhhc--CCCcccCCEEEEe
Confidence 34443 5788889998853
No 484
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=85.97 E-value=2.8 Score=44.55 Aligned_cols=76 Identities=20% Similarity=0.358 Sum_probs=54.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcCC--CceeEEEccccCChHHHHHHHHHHhcCCceEEEEcC-----ccccC-CCCCC
Q 010111 332 EEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTRG-MDVEG 403 (518)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~--~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G-iDip~ 403 (518)
..++||.|++++-|..+++.+..+.. .++.+..+||+.+.......+ + ....|+|+|. .+.++ +++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l---~-~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL---R-QGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcchhh
Confidence 45899999999999999888766421 257888899998765544333 2 4578999995 33333 67888
Q ss_pred CCEEEEcC
Q 010111 404 VNNVVNYD 411 (518)
Q Consensus 404 v~~VI~~~ 411 (518)
+.+||.-.
T Consensus 150 l~~lVlDE 157 (629)
T PRK11634 150 LSGLVLDE 157 (629)
T ss_pred ceEEEecc
Confidence 88877543
No 485
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=85.91 E-value=2.4 Score=44.49 Aligned_cols=54 Identities=20% Similarity=0.087 Sum_probs=37.3
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcH--HHHHHHHHHHHHhcc
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR--DLALQVKDVFAAIAP 126 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~--~La~Q~~~~~~~~~~ 126 (518)
..+.+|.|+||+|||..+...+.+.+.. +..++++=|-. ++...+...+++...
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~----g~~vi~fDpkgD~el~~~~~~~~~~~GR 235 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRR----GDVVIVFDPKGDADLLKRMYAEAKRAGR 235 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 4789999999999999877656655543 23677777776 445555555555544
No 486
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=85.88 E-value=1.1 Score=44.61 Aligned_cols=46 Identities=26% Similarity=0.336 Sum_probs=31.3
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHH
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~ 117 (518)
..+++++.|.||||||. ++-.++..+..+ +.+++|.=|.-+.....
T Consensus 14 e~~~~li~G~~GsGKT~-~i~~ll~~~~~~---g~~~iI~D~kg~~~~~f 59 (386)
T PF10412_consen 14 ENRHILIIGATGSGKTQ-AIRHLLDQIRAR---GDRAIIYDPKGEFTERF 59 (386)
T ss_dssp GGG-EEEEE-TTSSHHH-HHHHHHHHHHHT---T-EEEEEEETTHHHHHH
T ss_pred hhCcEEEECCCCCCHHH-HHHHHHHHHHHc---CCEEEEEECCchHHHHh
Confidence 35899999999999997 456677776554 34677777887665433
No 487
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=85.76 E-value=1.1 Score=40.88 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=23.7
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcC
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~P 109 (518)
-+++|.|++|||||.. ++-++..+.+. -..+++++|
T Consensus 14 fr~viIG~sGSGKT~l-i~~lL~~~~~~---f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTL-IKSLLYYLRHK---FDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHhhccc---CCEEEEEec
Confidence 4789999999999974 44455444332 234566666
No 488
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=85.72 E-value=22 Score=35.81 Aligned_cols=100 Identities=17% Similarity=0.259 Sum_probs=68.6
Q ss_pred HHHhcCCCcEEEEcCChhhHHHHHHHHhhc-CCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc-----cccC-
Q 010111 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTRG- 398 (518)
Q Consensus 326 ~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~-~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~G- 398 (518)
.+.... +++|+..||+--+..=++.+.+. +...-.++.+.|..++++|...+. +.+|+|+|+- +-.|
T Consensus 53 ~l~~~~-~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~-----~~kVfvaTPQvveNDl~~Gr 126 (542)
T COG1111 53 RLRWFG-GKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA-----KKKVFVATPQVVENDLKAGR 126 (542)
T ss_pred HHHhcC-CeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHh-----hCCEEEeccHHHHhHHhcCc
Confidence 334444 48999999998777776666553 333457889999999999998875 4589999973 2244
Q ss_pred CCCCCCCEEEEcCCCCCcc--chhhhhhhcccCCC
Q 010111 399 MDVEGVNNVVNYDKPAYIK--TYIHRAGRTARAGQ 431 (518)
Q Consensus 399 iDip~v~~VI~~~~p~s~~--~~~Qr~GR~gR~g~ 431 (518)
+|+.++.++|+-..-.... .|+..+-.-.|...
T Consensus 127 id~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k 161 (542)
T COG1111 127 IDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAK 161 (542)
T ss_pred cChHHceEEEechhhhccCcchHHHHHHHHHHhcc
Confidence 8999999988765544332 35555555555443
No 489
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=85.70 E-value=3.2 Score=43.07 Aligned_cols=69 Identities=12% Similarity=0.086 Sum_probs=47.2
Q ss_pred chhhHHHHHHhhCCCCCC---CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHH
Q 010111 52 FPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (518)
Q Consensus 52 ~~~Q~~a~~~~~~~~~~~---~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 123 (518)
|--|.+|+-..++.+... .-+-+.|.-|-||+.+.-+.+...+..+ -..+.|.+|+-+=..-+++.+-+
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~G---ysnIyvtSPspeNlkTlFeFv~k 326 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFG---YSNIYVTSPSPENLKTLFEFVFK 326 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcC---cceEEEcCCChHHHHHHHHHHHc
Confidence 556888876655544332 3466789999999999888887776654 23577778997765555554443
No 490
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=85.60 E-value=1.2 Score=49.32 Aligned_cols=36 Identities=19% Similarity=-0.020 Sum_probs=24.1
Q ss_pred hhhHHHHHHhhCCCCC-----------CCCEEEECCCCchHHHHhHH
Q 010111 53 PVQVAVWQETIGPGLF-----------ERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 53 ~~Q~~a~~~~~~~~~~-----------~~~~li~apTGsGKT~~~~l 88 (518)
-.|..|+..+...+.. ...+++.||||+|||.++-.
T Consensus 568 ~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~ 614 (852)
T TIGR03346 568 VGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKA 614 (852)
T ss_pred CCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHH
Confidence 4677776655443321 13488999999999987554
No 491
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=85.51 E-value=1 Score=45.14 Aligned_cols=45 Identities=24% Similarity=0.304 Sum_probs=32.5
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHH
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q 116 (518)
..+++++.|+||+|||.. +..++..+... +.+++|+=|..++...
T Consensus 41 ~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~---~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 41 EEAHTMIIGTTGTGKTTQ-IRELLASIRAR---GDRAIIYDPNGGFVSK 85 (410)
T ss_pred hhccEEEEcCCCCCHHHH-HHHHHHHHHhc---CCCEEEEeCCcchhHh
Confidence 358999999999999986 44445554442 3478888898886543
No 492
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=85.32 E-value=7.2 Score=40.36 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=39.7
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHH
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 123 (518)
+-.+..-|--.|||. ++.|++..+... ..+.++.|++.-|..++-+.+++..
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~s-~~gI~IGYvAHqKhvs~~Vf~EI~~ 254 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLKN-IIGISIGYVAHQKHVSQFVLKEVEF 254 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHHh-hcCceEEEEeeHHHHHHHHHHHHHH
Confidence 455666799999996 577888777764 5688999999999888776666543
No 493
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.19 E-value=2 Score=45.82 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=25.3
Q ss_pred ccEEEEechhHhhhHhHHhHHHHHHHhccc
Q 010111 198 LCYLVVDETDRLLREAYQAWLPTVLQLTRS 227 (518)
Q Consensus 198 ~~~vViDEah~~~~~~~~~~~~~i~~~~~~ 227 (518)
.=++|+|+-|.+-+......+..+++..+.
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~ 159 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPE 159 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCC
Confidence 348999999999988888888888887663
No 494
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=85.18 E-value=2.3 Score=44.21 Aligned_cols=64 Identities=14% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHhhC-CCCCCCCEEEECCCCchHHHHhHHHHHHHhhh-cccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 57 AVWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 57 ~a~~~~~~-~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~-~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
..++.++. -+..|.-+++.|++|+|||..++--+.+.+.+ +. +++|++ +-+-..|+.+.+..+.
T Consensus 18 ~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge----~~lyis-~ee~~~~i~~~~~~~g 83 (509)
T PRK09302 18 EGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDE----PGVFVT-FEESPEDIIRNVASFG 83 (509)
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCC----CEEEEE-ccCCHHHHHHHHHHcC
No 495
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=85.16 E-value=2.3 Score=39.48 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=30.8
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHH
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 123 (518)
+.+|+.+|+|+||+..+-..+-+ .+ ...+-+.+..|+..|.-+-.+
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATE-------An-STFFSvSSSDLvSKWmGESEk 212 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATE-------AN-STFFSVSSSDLVSKWMGESEK 212 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhh-------cC-CceEEeehHHHHHHHhccHHH
Confidence 46899999999999754333322 11 577888888887766544333
No 496
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=85.06 E-value=0.65 Score=38.50 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=14.2
Q ss_pred CEEEECCCCchHHHHhH
Q 010111 71 DLCINSPTGSGKTLSYA 87 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (518)
++++.+|+|+|||..+-
T Consensus 1 ~vlL~G~~G~GKt~l~~ 17 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLAR 17 (139)
T ss_dssp EEEEEESSSSSHHHHHH
T ss_pred CEEEECCCCCCHHHHHH
Confidence 47999999999998633
No 497
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=84.98 E-value=4.5 Score=44.87 Aligned_cols=34 Identities=18% Similarity=0.028 Sum_probs=22.0
Q ss_pred hHHHHHHhhCCCC--CCCCEEEECCCCchHHHHhHH
Q 010111 55 QVAVWQETIGPGL--FERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 55 Q~~a~~~~~~~~~--~~~~~li~apTGsGKT~~~~l 88 (518)
|..-+..++..+. ...+.++.||+|+|||..+-.
T Consensus 178 r~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 178 RDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 4444444443221 347899999999999986543
No 498
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=84.95 E-value=0.82 Score=37.26 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=13.5
Q ss_pred EEEECCCCchHHHHhH
Q 010111 72 LCINSPTGSGKTLSYA 87 (518)
Q Consensus 72 ~li~apTGsGKT~~~~ 87 (518)
+++.||+|+|||..+-
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5899999999998643
No 499
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=84.90 E-value=2.1 Score=39.93 Aligned_cols=38 Identities=16% Similarity=0.075 Sum_probs=25.8
Q ss_pred CCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHH
Q 010111 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (518)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~ 112 (518)
..|+-+++.+-.|.|||-+ +.+... ..+.+++..|...
T Consensus 92 k~g~l~~vyg~~g~gKt~a----~~~y~~----s~p~~~l~~~~p~ 129 (297)
T COG2842 92 KTGSLVVVYGYAGLGKTQA----AKNYAP----SNPNALLIEADPS 129 (297)
T ss_pred hcCceEEEeccccchhHHH----HHhhcc----cCccceeecCChh
Confidence 3577788999999999987 333222 2446777776654
No 500
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=84.83 E-value=0.79 Score=48.60 Aligned_cols=48 Identities=21% Similarity=0.122 Sum_probs=37.7
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHH
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 123 (518)
.++++.||||||||..+++|-+-.+. ..+||+=|--|+........++
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~~------~S~VV~D~KGEl~~~Ta~~R~~ 192 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTWP------GSAIVHDIKGENWQLTAGFRAR 192 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhCC------CCEEEEeCcchHHHHHHHHHHh
Confidence 78999999999999999999765432 2588888999987766555444
Done!