Query 010111
Match_columns 518
No_of_seqs 254 out of 2567
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 20:08:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010111.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010111hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 3.7E-61 1.3E-65 484.8 40.9 369 18-459 52-425 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 3.3E-57 1.1E-61 456.2 37.9 372 17-458 10-399 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 1.6E-56 5.6E-61 450.0 34.9 354 34-456 43-397 (410)
4 1s2m_A Putative ATP-dependent 100.0 7.1E-55 2.4E-59 436.7 37.7 359 21-455 20-378 (400)
5 3eiq_A Eukaryotic initiation f 100.0 2.2E-55 7.6E-60 442.5 33.7 355 34-456 46-401 (414)
6 1xti_A Probable ATP-dependent 100.0 2.4E-54 8.1E-59 431.6 39.4 359 22-453 8-369 (391)
7 3pey_A ATP-dependent RNA helic 100.0 2.4E-54 8.2E-59 432.2 35.2 380 21-482 4-392 (395)
8 3fht_A ATP-dependent RNA helic 100.0 1.4E-54 4.6E-59 436.5 32.7 361 20-455 23-393 (412)
9 3sqw_A ATP-dependent RNA helic 100.0 1.1E-53 3.7E-58 446.5 35.0 368 34-454 27-410 (579)
10 3i5x_A ATP-dependent RNA helic 100.0 2.4E-53 8E-58 444.0 34.8 368 34-454 78-461 (563)
11 1hv8_A Putative ATP-dependent 100.0 5.7E-53 2E-57 417.9 34.5 354 22-456 6-359 (367)
12 3fmp_B ATP-dependent RNA helic 100.0 3.8E-55 1.3E-59 448.2 17.8 353 34-455 98-460 (479)
13 1fuu_A Yeast initiation factor 100.0 1.1E-54 3.8E-59 434.5 19.9 360 21-456 20-380 (394)
14 2z0m_A 337AA long hypothetical 100.0 1.7E-51 6E-56 402.3 33.0 335 35-455 1-335 (337)
15 3fho_A ATP-dependent RNA helic 100.0 8.7E-52 3E-56 424.4 19.9 352 34-455 125-484 (508)
16 1oyw_A RECQ helicase, ATP-depe 100.0 9.8E-50 3.4E-54 408.8 31.6 386 23-511 3-393 (523)
17 2v1x_A ATP-dependent DNA helic 100.0 1.5E-49 5E-54 411.3 27.8 336 34-448 27-380 (591)
18 3oiy_A Reverse gyrase helicase 100.0 2.9E-49 1E-53 397.3 28.9 375 37-491 8-410 (414)
19 1tf5_A Preprotein translocase 100.0 3E-45 1E-49 378.5 30.6 372 45-458 79-565 (844)
20 4a2p_A RIG-I, retinoic acid in 100.0 1.3E-45 4.6E-50 385.5 26.6 338 46-445 3-511 (556)
21 2va8_A SSO2462, SKI2-type heli 100.0 3.2E-45 1.1E-49 392.1 29.4 344 18-443 4-409 (715)
22 2zj8_A DNA helicase, putative 100.0 2E-45 6.8E-50 393.5 26.9 333 35-444 8-389 (720)
23 3l9o_A ATP-dependent RNA helic 100.0 1.7E-45 5.7E-50 404.1 25.7 337 35-455 169-608 (1108)
24 2ykg_A Probable ATP-dependent 100.0 2.3E-45 8E-50 393.3 25.8 350 40-450 3-524 (696)
25 3tbk_A RIG-I helicase domain; 100.0 8.3E-45 2.8E-49 379.5 28.7 340 50-450 4-515 (555)
26 4ddu_A Reverse gyrase; topoiso 100.0 1.9E-44 6.6E-49 395.6 31.0 342 40-457 68-505 (1104)
27 2p6r_A Afuhel308 helicase; pro 100.0 3.9E-45 1.3E-49 390.1 24.3 334 35-444 10-390 (702)
28 1gku_B Reverse gyrase, TOP-RG; 100.0 5.4E-45 1.8E-49 400.5 24.8 339 40-456 47-468 (1054)
29 4a2q_A RIG-I, retinoic acid in 100.0 5.8E-44 2E-48 385.8 28.2 339 45-445 243-752 (797)
30 2xgj_A ATP-dependent RNA helic 100.0 2.2E-43 7.4E-48 384.2 29.6 317 43-442 80-499 (1010)
31 2fsf_A Preprotein translocase 100.0 4.1E-43 1.4E-47 361.4 26.5 370 46-457 71-602 (853)
32 4f92_B U5 small nuclear ribonu 100.0 4.5E-43 1.6E-47 397.5 29.3 351 33-447 909-1313(1724)
33 1wp9_A ATP-dependent RNA helic 100.0 1.4E-42 4.9E-47 356.8 29.6 322 50-444 9-477 (494)
34 1gm5_A RECG; helicase, replica 100.0 6.6E-43 2.3E-47 368.7 25.8 339 35-451 354-706 (780)
35 1nkt_A Preprotein translocase 100.0 5.7E-42 1.9E-46 353.2 32.0 370 45-458 107-637 (922)
36 4a2w_A RIG-I, retinoic acid in 100.0 1.4E-42 4.8E-47 378.5 26.7 341 44-445 242-752 (936)
37 4f92_B U5 small nuclear ribonu 100.0 1.3E-42 4.6E-47 393.7 21.2 348 35-446 66-477 (1724)
38 4a4z_A Antiviral helicase SKI2 100.0 1E-41 3.5E-46 371.1 25.7 316 45-439 35-489 (997)
39 4gl2_A Interferon-induced heli 100.0 7.6E-42 2.6E-46 366.3 22.2 337 50-441 7-517 (699)
40 2eyq_A TRCF, transcription-rep 100.0 1.1E-40 3.9E-45 368.2 29.5 330 35-443 588-923 (1151)
41 2whx_A Serine protease/ntpase/ 100.0 2.1E-41 7.1E-46 351.3 17.0 315 35-456 157-495 (618)
42 2oca_A DAR protein, ATP-depend 100.0 1.9E-40 6.5E-45 342.2 19.2 311 49-440 112-453 (510)
43 2fwr_A DNA repair protein RAD2 100.0 2.6E-40 9E-45 337.8 19.2 294 50-443 93-455 (472)
44 2jlq_A Serine protease subunit 100.0 4E-40 1.4E-44 332.2 19.4 288 47-441 1-310 (451)
45 1yks_A Genome polyprotein [con 100.0 8.2E-41 2.8E-45 335.6 12.2 282 66-456 5-316 (440)
46 2xau_A PRE-mRNA-splicing facto 100.0 2.6E-39 8.8E-44 344.0 20.5 330 34-444 78-445 (773)
47 2wv9_A Flavivirin protease NS2 100.0 1.6E-39 5.4E-44 339.1 16.0 312 42-455 202-549 (673)
48 3o8b_A HCV NS3 protease/helica 100.0 8E-39 2.7E-43 328.3 19.5 281 50-446 217-518 (666)
49 2z83_A Helicase/nucleoside tri 100.0 5.6E-39 1.9E-43 324.3 15.8 269 67-442 19-313 (459)
50 2v6i_A RNA helicase; membrane, 100.0 5.3E-37 1.8E-41 307.4 21.8 269 69-439 2-288 (431)
51 3dmq_A RNA polymerase-associat 100.0 9.8E-37 3.4E-41 332.8 24.2 342 49-456 152-627 (968)
52 3h1t_A Type I site-specific re 100.0 5.4E-37 1.8E-41 321.5 18.4 318 50-441 178-557 (590)
53 3rc3_A ATP-dependent RNA helic 100.0 3.3E-35 1.1E-39 305.5 21.6 283 67-455 153-454 (677)
54 3jux_A Protein translocase sub 100.0 2.1E-33 7E-38 283.4 32.7 392 46-458 72-607 (822)
55 1z63_A Helicase of the SNF2/RA 100.0 2.1E-34 7.1E-39 296.3 22.8 326 50-456 37-465 (500)
56 3fe2_A Probable ATP-dependent 100.0 2.1E-34 7.2E-39 266.8 19.8 213 17-299 24-240 (242)
57 3fmo_B ATP-dependent RNA helic 100.0 2.2E-33 7.6E-38 267.2 19.7 199 34-297 98-298 (300)
58 3ber_A Probable ATP-dependent 100.0 3.4E-33 1.2E-37 259.1 20.0 206 21-296 42-247 (249)
59 3ly5_A ATP-dependent RNA helic 100.0 4E-33 1.4E-37 260.8 18.9 205 24-291 49-257 (262)
60 3iuy_A Probable ATP-dependent 100.0 4.2E-33 1.4E-37 255.8 18.5 208 17-295 14-227 (228)
61 2pl3_A Probable ATP-dependent 100.0 1.2E-32 4.2E-37 254.1 21.6 209 19-297 22-233 (236)
62 1q0u_A Bstdead; DEAD protein, 100.0 6.4E-33 2.2E-37 252.9 18.9 206 22-298 4-213 (219)
63 2oxc_A Probable ATP-dependent 100.0 1.4E-32 4.7E-37 252.5 20.9 206 19-296 21-228 (230)
64 1vec_A ATP-dependent RNA helic 100.0 1.7E-32 5.9E-37 247.7 21.2 201 23-294 4-205 (206)
65 3bor_A Human initiation factor 100.0 6.7E-33 2.3E-37 255.7 18.6 210 18-297 26-235 (237)
66 1t6n_A Probable ATP-dependent 100.0 8.4E-32 2.9E-36 245.8 24.4 205 21-295 13-219 (220)
67 1wrb_A DJVLGB; RNA helicase, D 100.0 1.1E-32 3.6E-37 257.3 17.5 215 20-300 21-243 (253)
68 1qde_A EIF4A, translation init 100.0 3.7E-32 1.3E-36 248.9 19.4 208 19-298 11-218 (224)
69 3dkp_A Probable ATP-dependent 100.0 1.6E-32 5.6E-37 254.8 17.3 219 17-298 20-242 (245)
70 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.6E-32 5.6E-37 296.9 19.4 332 37-441 251-708 (1038)
71 1z3i_X Similar to RAD54-like; 100.0 8.5E-31 2.9E-35 275.2 30.2 366 50-442 55-528 (644)
72 3mwy_W Chromo domain-containin 100.0 1.6E-31 5.5E-36 287.7 23.8 333 50-442 236-684 (800)
73 2gxq_A Heat resistant RNA depe 100.0 1.4E-31 4.9E-36 241.9 19.5 202 23-296 2-205 (207)
74 2ipc_A Preprotein translocase 100.0 2.8E-28 9.6E-33 250.6 31.1 131 46-210 76-215 (997)
75 1c4o_A DNA nucleotide excision 100.0 9.4E-29 3.2E-33 259.2 26.4 132 317-452 422-560 (664)
76 2d7d_A Uvrabc system protein B 100.0 2.4E-27 8.1E-32 248.5 27.7 131 317-451 428-565 (661)
77 2hjv_A ATP-dependent RNA helic 100.0 3.7E-28 1.3E-32 209.9 17.0 149 304-455 7-155 (163)
78 2p6n_A ATP-dependent RNA helic 100.0 6E-28 2E-32 213.4 15.9 170 285-459 9-179 (191)
79 1t5i_A C_terminal domain of A 100.0 1E-27 3.5E-32 208.8 15.6 149 304-455 3-152 (172)
80 2jgn_A DBX, DDX3, ATP-dependen 100.0 1.1E-27 3.8E-32 210.9 15.6 153 303-458 16-169 (185)
81 3eaq_A Heat resistant RNA depe 100.0 3E-27 1E-31 213.1 18.7 148 306-456 5-152 (212)
82 1fuk_A Eukaryotic initiation f 100.0 1.6E-27 5.4E-32 206.5 16.1 147 306-455 3-150 (165)
83 2rb4_A ATP-dependent RNA helic 99.9 1.5E-27 5.3E-32 208.7 15.2 149 304-455 5-160 (175)
84 3i32_A Heat resistant RNA depe 99.9 2.6E-26 8.8E-31 216.4 18.6 147 307-456 3-149 (300)
85 2yjt_D ATP-dependent RNA helic 99.9 1.1E-27 3.6E-32 208.6 0.0 146 307-455 4-150 (170)
86 2vl7_A XPD; helicase, unknown 99.9 1.1E-24 3.9E-29 224.0 17.4 152 46-210 4-188 (540)
87 3crv_A XPD/RAD3 related DNA he 99.9 7.7E-23 2.6E-27 211.2 20.6 153 47-211 1-187 (551)
88 3b6e_A Interferon-induced heli 99.9 7.4E-23 2.5E-27 185.9 12.5 147 45-217 28-182 (216)
89 4a15_A XPD helicase, ATP-depen 99.9 5.8E-21 2E-25 198.5 17.4 88 50-140 3-90 (620)
90 3llm_A ATP-dependent RNA helic 99.8 8.9E-21 3E-25 174.0 15.3 143 48-224 59-205 (235)
91 1rif_A DAR protein, DNA helica 99.8 5E-21 1.7E-25 181.0 10.4 128 50-212 113-240 (282)
92 1z5z_A Helicase of the SNF2/RA 99.8 2.7E-19 9.2E-24 166.6 13.7 126 315-443 93-225 (271)
93 2fz4_A DNA repair protein RAD2 99.8 5.7E-19 2E-23 161.7 12.1 117 50-215 93-210 (237)
94 1w36_D RECD, exodeoxyribonucle 98.7 3.5E-08 1.2E-12 102.5 10.4 85 38-128 136-223 (608)
95 4b3f_X DNA-binding protein smu 98.2 2.3E-06 7.9E-11 89.8 8.2 68 50-124 189-256 (646)
96 2gk6_A Regulator of nonsense t 98.1 1.2E-05 4.1E-10 83.9 12.2 70 48-124 178-247 (624)
97 2xzl_A ATP-dependent helicase 98.1 2.1E-05 7.1E-10 83.9 12.7 70 48-124 358-427 (802)
98 3upu_A ATP-dependent DNA helic 98.0 6.5E-06 2.2E-10 82.7 7.3 74 45-121 20-94 (459)
99 2wjy_A Regulator of nonsense t 98.0 2.8E-05 9.6E-10 82.9 12.2 70 48-124 354-423 (800)
100 3e1s_A Exodeoxyribonuclease V, 97.8 5E-05 1.7E-09 78.0 9.4 64 50-121 189-252 (574)
101 3hgt_A HDA1 complex subunit 3; 97.8 0.00035 1.2E-08 65.0 13.4 122 315-444 106-239 (328)
102 3lfu_A DNA helicase II; SF1 he 97.2 0.00054 1.8E-08 72.1 8.4 72 49-126 8-79 (647)
103 3vkw_A Replicase large subunit 97.1 0.00041 1.4E-08 67.8 5.2 45 70-123 162-206 (446)
104 1uaa_A REP helicase, protein ( 97.0 0.0013 4.4E-08 69.4 8.3 82 50-137 2-86 (673)
105 3ec2_A DNA replication protein 96.9 0.0034 1.2E-07 53.8 8.5 20 68-87 37-56 (180)
106 1pjr_A PCRA; DNA repair, DNA r 96.8 0.0026 9E-08 67.5 8.6 82 49-136 10-93 (724)
107 1xx6_A Thymidine kinase; NESG, 96.8 0.0031 1.1E-07 54.5 7.5 39 69-111 8-46 (191)
108 2b8t_A Thymidine kinase; deoxy 96.7 0.0014 4.9E-08 58.1 5.0 39 69-111 12-50 (223)
109 2orw_A Thymidine kinase; TMTK, 96.7 0.00051 1.8E-08 59.3 1.7 39 69-111 3-41 (184)
110 2o0j_A Terminase, DNA packagin 96.6 0.026 8.8E-07 54.4 12.9 71 50-126 163-233 (385)
111 3e2i_A Thymidine kinase; Zn-bi 96.4 0.004 1.4E-07 54.2 5.8 40 69-112 28-67 (219)
112 1a5t_A Delta prime, HOLB; zinc 96.4 0.0093 3.2E-07 56.8 8.6 38 51-88 3-43 (334)
113 3cpe_A Terminase, DNA packagin 96.3 0.0076 2.6E-07 62.3 7.8 73 50-128 163-235 (592)
114 2j9r_A Thymidine kinase; TK1, 96.2 0.0065 2.2E-07 53.1 5.6 40 69-112 28-67 (214)
115 1w4r_A Thymidine kinase; type 96.0 0.0057 2E-07 52.5 4.5 38 69-110 20-57 (195)
116 3u4q_A ATP-dependent helicase/ 96.0 0.01 3.5E-07 66.8 7.8 69 49-123 9-79 (1232)
117 3te6_A Regulatory protein SIR3 96.0 0.025 8.4E-07 53.0 9.0 28 68-96 44-71 (318)
118 1l8q_A Chromosomal replication 95.9 0.045 1.5E-06 51.7 10.7 36 69-108 37-72 (324)
119 2w58_A DNAI, primosome compone 95.8 0.011 3.7E-07 51.6 5.4 18 70-87 55-72 (202)
120 2orv_A Thymidine kinase; TP4A 95.5 0.028 9.7E-07 49.5 6.8 40 69-112 19-58 (234)
121 2zpa_A Uncharacterized protein 95.0 0.04 1.4E-06 56.7 7.3 59 50-117 175-233 (671)
122 2z4s_A Chromosomal replication 95.0 0.12 4E-06 51.2 10.4 38 69-108 130-167 (440)
123 2chg_A Replication factor C sm 94.7 0.17 6E-06 44.2 10.1 18 70-87 39-56 (226)
124 1gm5_A RECG; helicase, replica 94.7 0.077 2.6E-06 56.3 8.7 81 332-412 417-499 (780)
125 2gno_A DNA polymerase III, gam 94.2 0.1 3.5E-06 48.7 7.5 19 70-88 19-37 (305)
126 2v1u_A Cell division control p 93.9 0.19 6.6E-06 48.4 9.2 20 68-87 43-62 (387)
127 3oiy_A Reverse gyrase helicase 93.9 0.2 6.9E-06 49.0 9.4 82 331-412 63-148 (414)
128 3u61_B DNA polymerase accessor 93.6 0.34 1.2E-05 45.6 10.0 14 197-210 105-118 (324)
129 2hjv_A ATP-dependent RNA helic 93.5 0.73 2.5E-05 38.2 11.0 78 101-206 35-112 (163)
130 2w0m_A SSO2452; RECA, SSPF, un 93.5 0.26 9E-06 43.6 8.7 46 59-108 12-58 (235)
131 2qby_B CDC6 homolog 3, cell di 93.3 0.31 1.1E-05 47.0 9.4 19 69-87 45-63 (384)
132 1iqp_A RFCS; clamp loader, ext 93.2 0.1 3.6E-06 49.1 5.9 17 71-87 48-64 (327)
133 1sxj_E Activator 1 40 kDa subu 92.9 0.61 2.1E-05 44.3 10.8 18 70-87 37-54 (354)
134 3hjh_A Transcription-repair-co 92.8 0.99 3.4E-05 44.8 12.3 52 68-126 13-64 (483)
135 1fuk_A Eukaryotic initiation f 92.7 0.93 3.2E-05 37.6 10.4 77 101-205 30-106 (165)
136 2rb4_A ATP-dependent RNA helic 92.7 0.7 2.4E-05 38.9 9.7 75 101-203 34-108 (175)
137 3eaq_A Heat resistant RNA depe 92.4 0.9 3.1E-05 39.6 10.3 75 101-203 31-105 (212)
138 2p6n_A ATP-dependent RNA helic 92.3 0.85 2.9E-05 39.0 9.9 76 102-205 55-130 (191)
139 3kl4_A SRP54, signal recogniti 92.2 0.54 1.8E-05 45.9 9.3 36 69-108 97-132 (433)
140 1t5i_A C_terminal domain of A 92.1 0.95 3.3E-05 37.9 9.8 77 101-205 31-107 (172)
141 2z43_A DNA repair and recombin 92.1 1.1 3.9E-05 41.9 11.3 57 67-123 105-164 (324)
142 2qby_A CDC6 homolog 1, cell di 92.0 0.65 2.2E-05 44.6 9.8 19 69-87 45-63 (386)
143 2eyq_A TRCF, transcription-rep 91.9 0.5 1.7E-05 52.6 9.8 80 331-410 651-732 (1151)
144 4ddu_A Reverse gyrase; topoiso 91.6 0.32 1.1E-05 53.9 7.7 81 331-412 120-205 (1104)
145 2jgn_A DBX, DDX3, ATP-dependen 91.4 0.54 1.8E-05 40.1 7.6 93 79-204 29-121 (185)
146 3n70_A Transport activator; si 91.0 0.15 5E-06 41.6 3.4 20 68-87 23-42 (145)
147 3dm5_A SRP54, signal recogniti 90.7 0.93 3.2E-05 44.3 9.2 60 70-136 101-162 (443)
148 2i4i_A ATP-dependent RNA helic 89.5 2.4 8.2E-05 41.1 11.4 76 100-203 275-350 (417)
149 1jr3_A DNA polymerase III subu 89.4 0.64 2.2E-05 44.5 7.0 18 70-87 39-56 (373)
150 3i5x_A ATP-dependent RNA helic 89.3 3.6 0.00012 41.9 12.9 100 80-205 319-418 (563)
151 2i1q_A DNA repair and recombin 89.1 2.7 9.1E-05 39.3 10.9 25 68-92 97-121 (322)
152 3cmu_A Protein RECA, recombina 89.0 0.37 1.3E-05 56.0 5.4 49 59-111 1415-1465(2050)
153 1sxj_B Activator 1 37 kDa subu 88.8 0.98 3.4E-05 42.1 7.7 17 71-87 44-60 (323)
154 3co5_A Putative two-component 88.8 0.15 5.2E-06 41.4 1.7 18 68-85 26-43 (143)
155 1tue_A Replication protein E1; 88.8 0.45 1.5E-05 41.1 4.6 48 37-86 28-75 (212)
156 3iuy_A Probable ATP-dependent 88.5 1.1 3.6E-05 39.5 7.2 77 331-411 93-175 (228)
157 2d7d_A Uvrabc system protein B 88.3 1.8 6.2E-05 45.1 9.9 82 100-209 444-525 (661)
158 3sqw_A ATP-dependent RNA helic 88.3 4.5 0.00015 41.3 12.8 82 100-206 287-368 (579)
159 1t6n_A Probable ATP-dependent 88.0 2.4 8.3E-05 36.9 9.3 76 333-411 83-166 (220)
160 3i32_A Heat resistant RNA depe 87.9 2.1 7.2E-05 39.6 9.1 75 101-203 28-102 (300)
161 3ber_A Probable ATP-dependent 87.9 2.3 7.9E-05 38.0 9.2 77 331-411 110-194 (249)
162 2qgz_A Helicase loader, putati 87.5 0.58 2E-05 43.6 5.1 20 69-88 152-171 (308)
163 2oap_1 GSPE-2, type II secreti 86.6 1.1 3.8E-05 44.9 6.8 40 41-85 237-276 (511)
164 1c4o_A DNA nucleotide excision 86.6 2.9 0.0001 43.5 10.2 82 100-209 438-519 (664)
165 3io5_A Recombination and repai 85.8 0.68 2.3E-05 43.0 4.3 45 66-113 26-70 (333)
166 2r44_A Uncharacterized protein 85.7 0.19 6.4E-06 47.5 0.6 33 55-87 32-64 (331)
167 2dr3_A UPF0273 protein PH0284; 85.6 0.87 3E-05 40.5 5.1 52 67-123 21-72 (247)
168 3syl_A Protein CBBX; photosynt 85.6 1 3.5E-05 41.8 5.7 21 68-88 66-86 (309)
169 3bor_A Human initiation factor 85.5 1.6 5.5E-05 38.6 6.7 78 331-411 97-181 (237)
170 2zts_A Putative uncharacterize 85.5 0.66 2.3E-05 41.4 4.2 53 68-124 29-81 (251)
171 2eyu_A Twitching motility prot 85.3 0.5 1.7E-05 42.9 3.2 19 67-85 23-41 (261)
172 2gxq_A Heat resistant RNA depe 85.1 3.4 0.00012 35.4 8.6 75 332-411 72-152 (207)
173 3fht_A ATP-dependent RNA helic 84.9 6.4 0.00022 37.8 11.4 75 101-203 266-340 (412)
174 1vec_A ATP-dependent RNA helic 84.5 3.3 0.00011 35.5 8.2 75 332-410 71-153 (206)
175 1e9r_A Conjugal transfer prote 84.4 0.82 2.8E-05 45.0 4.6 43 69-115 53-95 (437)
176 3fe2_A Probable ATP-dependent 84.4 2.3 7.7E-05 37.8 7.2 76 332-411 102-184 (242)
177 3bh0_A DNAB-like replicative h 84.1 1.4 4.8E-05 41.1 5.8 61 57-122 56-116 (315)
178 2db3_A ATP-dependent RNA helic 84.0 6 0.0002 38.7 10.7 73 103-203 302-374 (434)
179 2v1x_A ATP-dependent DNA helic 83.8 2 7E-05 44.0 7.4 59 332-393 84-144 (591)
180 1oyw_A RECQ helicase, ATP-depe 83.6 2.3 7.9E-05 42.9 7.6 59 332-393 65-123 (523)
181 2c9o_A RUVB-like 1; hexameric 83.6 0.92 3.2E-05 44.9 4.6 20 68-87 62-81 (456)
182 2cvh_A DNA repair and recombin 83.5 1.1 3.7E-05 39.0 4.6 44 58-108 8-52 (220)
183 3hws_A ATP-dependent CLP prote 83.5 0.54 1.9E-05 45.0 2.8 21 68-88 50-70 (363)
184 2p65_A Hypothetical protein PF 83.3 1.7 5.7E-05 36.5 5.6 19 69-87 43-61 (187)
185 2bjv_A PSP operon transcriptio 83.1 0.66 2.3E-05 42.0 3.1 19 68-86 28-46 (265)
186 3nbx_X ATPase RAVA; AAA+ ATPas 83.0 0.26 8.8E-06 49.3 0.3 32 54-85 26-57 (500)
187 2oxc_A Probable ATP-dependent 82.8 2.5 8.6E-05 37.1 6.8 75 332-411 92-174 (230)
188 3pey_A ATP-dependent RNA helic 82.8 4.3 0.00015 38.8 9.0 79 101-207 243-321 (395)
189 1jbk_A CLPB protein; beta barr 82.7 1.2 4.2E-05 37.4 4.5 19 69-87 43-61 (195)
190 1hv8_A Putative ATP-dependent 82.7 3.8 0.00013 38.6 8.5 78 100-205 237-314 (367)
191 1xti_A Probable ATP-dependent 82.5 3.9 0.00013 39.0 8.6 79 100-206 249-327 (391)
192 1s2m_A Putative ATP-dependent 82.0 6.6 0.00023 37.6 10.1 77 101-205 258-334 (400)
193 1u0j_A DNA replication protein 82.0 2.4 8.1E-05 38.2 6.2 48 37-87 73-122 (267)
194 3bos_A Putative DNA replicatio 81.9 1.5 5E-05 38.7 4.9 20 68-87 51-70 (242)
195 3u4q_B ATP-dependent helicase/ 81.7 2.1 7.2E-05 47.9 7.0 39 73-112 5-43 (1166)
196 2kjq_A DNAA-related protein; s 81.4 1.4 5E-05 35.8 4.2 20 68-87 35-54 (149)
197 2j0s_A ATP-dependent RNA helic 81.3 7.3 0.00025 37.5 10.1 76 102-205 277-352 (410)
198 4b4t_J 26S protease regulatory 80.4 1.1 3.9E-05 43.1 3.7 20 68-87 181-200 (405)
199 3vkg_A Dynein heavy chain, cyt 80.4 1.5 5E-05 53.5 5.3 53 35-88 873-925 (3245)
200 3cf0_A Transitional endoplasmi 80.4 1 3.5E-05 41.8 3.3 20 68-87 48-67 (301)
201 1ojl_A Transcriptional regulat 80.2 1.1 3.9E-05 41.5 3.6 20 68-87 24-43 (304)
202 4b4t_M 26S protease regulatory 80.0 1.1 3.7E-05 43.8 3.4 20 68-87 214-233 (434)
203 1wrb_A DJVLGB; RNA helicase, D 79.9 6.5 0.00022 34.9 8.6 75 333-411 101-182 (253)
204 2qmh_A HPR kinase/phosphorylas 79.7 0.9 3.1E-05 38.9 2.5 18 68-85 33-50 (205)
205 1w36_B RECB, exodeoxyribonucle 79.7 3.1 0.00011 46.6 7.5 55 70-124 17-79 (1180)
206 1ex7_A Guanylate kinase; subst 79.7 0.8 2.7E-05 39.0 2.1 16 70-85 2-17 (186)
207 4b4t_H 26S protease regulatory 79.6 2.2 7.4E-05 41.8 5.4 20 68-87 242-261 (467)
208 2qz4_A Paraplegin; AAA+, SPG7, 79.5 1.2 4E-05 40.1 3.4 20 68-87 38-57 (262)
209 3bgw_A DNAB-like replicative h 79.4 2.1 7.3E-05 42.1 5.4 48 58-109 186-233 (444)
210 2chq_A Replication factor C sm 79.4 1.8 6.2E-05 40.1 4.8 17 71-87 40-56 (319)
211 3uk6_A RUVB-like 2; hexameric 79.4 1.5 5.3E-05 41.7 4.4 21 68-88 69-89 (368)
212 3h4m_A Proteasome-activating n 79.3 1.2 4E-05 40.8 3.3 20 68-87 50-69 (285)
213 4ag6_A VIRB4 ATPase, type IV s 79.2 1.6 5.6E-05 42.1 4.5 42 68-113 34-75 (392)
214 3a8t_A Adenylate isopentenyltr 79.1 0.95 3.3E-05 42.4 2.6 19 69-87 40-58 (339)
215 4b4t_K 26S protease regulatory 78.8 1.3 4.4E-05 43.2 3.5 20 68-87 205-224 (428)
216 2qor_A Guanylate kinase; phosp 78.8 1.2 3.9E-05 38.6 3.0 21 66-86 9-29 (204)
217 2pl3_A Probable ATP-dependent 78.7 7.6 0.00026 34.0 8.5 76 331-411 96-179 (236)
218 1qde_A EIF4A, translation init 78.6 2.8 9.4E-05 36.6 5.5 76 331-411 81-163 (224)
219 1kgd_A CASK, peripheral plasma 78.6 1.3 4.6E-05 37.3 3.3 19 68-86 4-22 (180)
220 2zr9_A Protein RECA, recombina 78.2 2.2 7.7E-05 40.4 5.0 47 59-109 49-97 (349)
221 2q6t_A DNAB replication FORK h 78.2 2.9 0.0001 41.1 6.0 49 58-109 189-237 (444)
222 1p9r_A General secretion pathw 78.2 1.6 5.5E-05 42.5 4.0 30 54-85 154-183 (418)
223 1sxj_D Activator 1 41 kDa subu 78.1 0.95 3.2E-05 42.9 2.4 18 70-87 59-76 (353)
224 2iut_A DNA translocase FTSK; n 78.0 2.2 7.5E-05 43.1 5.0 43 69-111 214-256 (574)
225 4b4t_L 26S protease subunit RP 78.0 1.4 4.6E-05 43.1 3.4 20 68-87 214-233 (437)
226 3b9p_A CG5977-PA, isoform A; A 77.9 1.2 4.1E-05 41.0 3.0 19 69-87 54-72 (297)
227 1d2n_A N-ethylmaleimide-sensit 77.8 1.1 3.8E-05 40.7 2.7 20 69-88 64-83 (272)
228 3exa_A TRNA delta(2)-isopenten 77.6 1.2 4.1E-05 41.2 2.8 18 70-87 4-21 (322)
229 2r6a_A DNAB helicase, replicat 77.5 3.1 0.00011 41.0 6.1 49 58-109 192-240 (454)
230 4akg_A Glutathione S-transfera 77.5 1.6 5.5E-05 52.6 4.4 53 35-88 890-942 (2695)
231 3vaa_A Shikimate kinase, SK; s 77.5 1.4 4.7E-05 37.9 3.1 20 68-87 24-43 (199)
232 2ius_A DNA translocase FTSK; n 77.4 2.7 9.3E-05 41.9 5.5 43 68-110 166-208 (512)
233 3ly5_A ATP-dependent RNA helic 77.4 9.2 0.00032 34.3 8.8 77 331-411 125-209 (262)
234 1ofh_A ATP-dependent HSL prote 77.4 1.4 4.9E-05 40.7 3.4 19 69-87 50-68 (310)
235 2r2a_A Uncharacterized protein 77.2 1.4 4.9E-05 37.9 3.0 22 71-92 7-28 (199)
236 1u94_A RECA protein, recombina 77.1 2.8 9.5E-05 39.8 5.3 47 59-109 51-99 (356)
237 1xwi_A SKD1 protein; VPS4B, AA 77.1 1.2 4.3E-05 41.6 2.9 19 69-87 45-63 (322)
238 1wp9_A ATP-dependent RNA helic 77.0 12 0.00042 36.6 10.4 100 78-207 340-447 (494)
239 3t15_A Ribulose bisphosphate c 77.0 1.5 5E-05 40.5 3.2 19 69-87 36-54 (293)
240 4a1f_A DNAB helicase, replicat 77.0 3 0.0001 39.2 5.3 48 58-109 35-82 (338)
241 3foz_A TRNA delta(2)-isopenten 77.0 1.3 4.4E-05 40.9 2.8 18 70-87 11-28 (316)
242 3eie_A Vacuolar protein sortin 76.8 1.3 4.4E-05 41.5 2.9 19 69-87 51-69 (322)
243 3iij_A Coilin-interacting nucl 76.8 2.1 7.1E-05 35.9 4.0 20 68-87 10-29 (180)
244 4fcw_A Chaperone protein CLPB; 76.5 0.48 1.6E-05 44.1 -0.2 18 70-87 48-65 (311)
245 1vma_A Cell division protein F 76.5 20 0.00067 33.0 10.8 20 69-88 104-123 (306)
246 4b4t_I 26S protease regulatory 76.1 1.7 5.9E-05 42.1 3.5 20 68-87 215-234 (437)
247 1xp8_A RECA protein, recombina 76.1 2.8 9.6E-05 40.0 5.0 49 58-110 61-111 (366)
248 3trf_A Shikimate kinase, SK; a 76.0 1.6 5.4E-05 36.9 3.0 20 69-88 5-24 (185)
249 2qp9_X Vacuolar protein sortin 75.8 1.6 5.4E-05 41.6 3.2 19 69-87 84-102 (355)
250 3f9v_A Minichromosome maintena 75.7 2 6.7E-05 44.1 4.1 15 71-85 329-343 (595)
251 1qhx_A CPT, protein (chloramph 75.7 1.4 4.8E-05 36.9 2.6 18 69-86 3-20 (178)
252 3tau_A Guanylate kinase, GMP k 75.6 1.7 5.7E-05 37.7 3.1 19 68-86 7-25 (208)
253 1lvg_A Guanylate kinase, GMP k 75.5 1.7 5.8E-05 37.3 3.1 19 68-86 3-21 (198)
254 2yjt_D ATP-dependent RNA helic 77.4 0.57 2E-05 39.2 0.0 77 101-205 30-106 (170)
255 1lv7_A FTSH; alpha/beta domain 75.3 1.5 5E-05 39.4 2.8 19 69-87 45-63 (257)
256 1cr0_A DNA primase/helicase; R 75.3 3.6 0.00012 37.8 5.5 48 58-108 24-71 (296)
257 1n0w_A DNA repair protein RAD5 74.9 2.7 9.1E-05 37.2 4.4 26 66-91 21-46 (243)
258 3lw7_A Adenylate kinase relate 74.6 1.3 4.5E-05 36.7 2.1 17 71-87 3-19 (179)
259 1zp6_A Hypothetical protein AT 74.3 1.2 4.2E-05 37.8 1.8 18 68-85 8-25 (191)
260 1q57_A DNA primase/helicase; d 74.3 3.4 0.00012 41.4 5.4 59 59-121 232-290 (503)
261 3ney_A 55 kDa erythrocyte memb 74.2 2.2 7.5E-05 36.6 3.4 18 68-85 18-35 (197)
262 1y63_A LMAJ004144AAA protein; 74.1 1.8 6E-05 36.7 2.8 20 68-87 9-28 (184)
263 1um8_A ATP-dependent CLP prote 74.1 2 6.9E-05 41.1 3.5 19 69-87 72-90 (376)
264 2r8r_A Sensor protein; KDPD, P 74.0 3.4 0.00012 36.2 4.6 24 71-94 8-31 (228)
265 3pfi_A Holliday junction ATP-d 73.9 2.1 7.2E-05 40.2 3.5 19 69-87 55-73 (338)
266 3hr8_A Protein RECA; alpha and 73.5 3.1 0.00011 39.4 4.6 41 66-110 58-98 (356)
267 1sxj_C Activator 1 40 kDa subu 73.5 1.3 4.5E-05 41.8 2.0 18 71-88 48-65 (340)
268 2ze6_A Isopentenyl transferase 73.4 1.8 6.2E-05 38.9 2.8 17 71-87 3-19 (253)
269 2gza_A Type IV secretion syste 73.3 1.8 6.3E-05 41.2 3.0 18 68-85 174-191 (361)
270 2ewv_A Twitching motility prot 73.3 1.7 5.7E-05 41.7 2.7 19 67-85 134-152 (372)
271 3fmo_B ATP-dependent RNA helic 73.3 4.8 0.00016 37.1 5.8 73 332-411 162-243 (300)
272 3d8b_A Fidgetin-like protein 1 73.0 2 6.7E-05 40.9 3.1 20 69-88 117-136 (357)
273 2j41_A Guanylate kinase; GMP, 72.9 2.2 7.7E-05 36.6 3.2 19 68-86 5-23 (207)
274 1kag_A SKI, shikimate kinase I 72.8 2.4 8.3E-05 35.1 3.4 18 69-86 4-21 (173)
275 2pt7_A CAG-ALFA; ATPase, prote 72.7 3.3 0.00011 38.9 4.5 18 68-85 170-187 (330)
276 1yks_A Genome polyprotein [con 72.6 5.8 0.0002 38.9 6.5 69 101-202 177-245 (440)
277 2r62_A Cell division protease 72.6 1.3 4.6E-05 40.0 1.7 19 69-87 44-62 (268)
278 3tr0_A Guanylate kinase, GMP k 72.4 2.3 8E-05 36.4 3.2 19 68-86 6-24 (205)
279 1njg_A DNA polymerase III subu 72.2 2.4 8.4E-05 37.1 3.4 18 70-87 46-63 (250)
280 3crm_A TRNA delta(2)-isopenten 71.6 2.1 7.1E-05 39.9 2.8 18 70-87 6-23 (323)
281 3jvv_A Twitching mobility prot 71.4 1.9 6.7E-05 40.9 2.6 17 69-85 123-139 (356)
282 3tbk_A RIG-I helicase domain; 71.2 13 0.00044 37.4 9.0 97 80-203 370-476 (555)
283 2px0_A Flagellar biosynthesis 71.0 4 0.00014 37.5 4.6 21 68-88 104-124 (296)
284 3ice_A Transcription terminati 71.0 5.8 0.0002 37.9 5.6 31 56-87 162-192 (422)
285 1ly1_A Polynucleotide kinase; 70.6 1.9 6.5E-05 36.0 2.1 16 71-86 4-19 (181)
286 3vfd_A Spastin; ATPase, microt 70.5 2.3 7.7E-05 41.1 2.9 20 69-88 148-167 (389)
287 3d3q_A TRNA delta(2)-isopenten 70.2 2.4 8.1E-05 39.8 2.9 18 70-87 8-25 (340)
288 3eiq_A Eukaryotic initiation f 70.1 6.8 0.00023 37.7 6.4 77 101-205 280-356 (414)
289 3k1j_A LON protease, ATP-depen 70.0 1.7 5.8E-05 44.8 2.0 21 67-87 58-78 (604)
290 3kb2_A SPBC2 prophage-derived 69.8 2 6.8E-05 35.6 2.1 17 71-87 3-19 (173)
291 2ehv_A Hypothetical protein PH 69.8 5.1 0.00017 35.5 5.0 25 66-90 27-51 (251)
292 1gku_B Reverse gyrase, TOP-RG; 69.8 5 0.00017 44.2 5.8 79 331-411 98-183 (1054)
293 1z6g_A Guanylate kinase; struc 69.7 3.1 0.00011 36.3 3.4 18 68-85 22-39 (218)
294 3a00_A Guanylate kinase, GMP k 69.7 3 0.0001 35.2 3.2 16 70-85 2-17 (186)
295 1hqc_A RUVB; extended AAA-ATPa 69.6 2.2 7.4E-05 39.8 2.5 19 69-87 38-56 (324)
296 1fuu_A Yeast initiation factor 69.4 12 0.00042 35.5 8.0 76 331-411 88-170 (394)
297 2zan_A Vacuolar protein sortin 69.3 2.5 8.4E-05 41.6 2.9 19 69-87 167-185 (444)
298 1ixz_A ATP-dependent metallopr 69.2 2.6 8.9E-05 37.7 2.9 17 70-86 50-66 (254)
299 3hu3_A Transitional endoplasmi 69.0 2.4 8.1E-05 42.3 2.7 20 68-87 237-256 (489)
300 4eun_A Thermoresistant glucoki 68.6 2.4 8.1E-05 36.4 2.4 20 68-87 28-47 (200)
301 1kht_A Adenylate kinase; phosp 68.6 2.3 7.7E-05 36.0 2.2 19 69-87 3-21 (192)
302 1v5w_A DMC1, meiotic recombina 68.3 4.9 0.00017 37.9 4.7 45 66-110 119-165 (343)
303 3cm0_A Adenylate kinase; ATP-b 68.3 1.7 5.8E-05 36.7 1.3 19 69-87 4-22 (186)
304 3cmw_A Protein RECA, recombina 68.1 5.3 0.00018 45.9 5.6 45 68-116 1430-1474(1706)
305 3eph_A TRNA isopentenyltransfe 68.0 2.5 8.4E-05 40.7 2.5 17 71-87 4-20 (409)
306 2xau_A PRE-mRNA-splicing facto 68.0 12 0.0004 39.7 8.0 84 101-203 303-393 (773)
307 1g8p_A Magnesium-chelatase 38 67.9 1.6 5.6E-05 41.2 1.3 19 69-87 45-63 (350)
308 1g5t_A COB(I)alamin adenosyltr 67.9 6.6 0.00022 33.5 4.9 35 69-107 28-62 (196)
309 4gl2_A Interferon-induced heli 67.8 4.9 0.00017 42.1 5.1 79 101-203 400-488 (699)
310 4gp7_A Metallophosphoesterase; 67.6 2.1 7.1E-05 35.7 1.8 20 68-87 8-27 (171)
311 2qt1_A Nicotinamide riboside k 67.4 2.8 9.6E-05 36.1 2.6 21 65-85 17-37 (207)
312 1knq_A Gluconate kinase; ALFA/ 67.4 2.1 7.3E-05 35.6 1.8 19 69-87 8-26 (175)
313 2v54_A DTMP kinase, thymidylat 67.3 2.9 0.0001 35.7 2.7 20 68-87 3-22 (204)
314 2z0m_A 337AA long hypothetical 66.9 13 0.00044 34.4 7.4 75 100-206 219-293 (337)
315 2rhm_A Putative kinase; P-loop 66.1 2.4 8.2E-05 35.9 1.9 19 69-87 5-23 (193)
316 3pvs_A Replication-associated 66.1 3 0.0001 41.0 2.8 18 70-87 51-68 (447)
317 3pxg_A Negative regulator of g 66.1 2.5 8.6E-05 41.9 2.2 21 68-88 200-220 (468)
318 2x8a_A Nuclear valosin-contain 66.1 3.9 0.00013 37.2 3.4 17 70-86 45-61 (274)
319 3bfn_A Kinesin-like protein KI 66.0 3.8 0.00013 39.2 3.4 35 51-85 75-115 (388)
320 1g41_A Heat shock protein HSLU 65.6 4.1 0.00014 39.8 3.5 19 69-87 50-68 (444)
321 2l8b_A Protein TRAI, DNA helic 65.4 8.9 0.0003 32.2 5.0 60 53-117 37-96 (189)
322 4a74_A DNA repair and recombin 65.3 3.2 0.00011 36.2 2.6 23 66-88 22-44 (231)
323 1in4_A RUVB, holliday junction 65.3 3.6 0.00012 38.6 3.1 18 70-87 52-69 (334)
324 1s96_A Guanylate kinase, GMP k 65.1 3.9 0.00013 35.7 3.1 19 67-85 14-32 (219)
325 2oca_A DAR protein, ATP-depend 64.9 22 0.00076 35.3 9.1 78 103-207 349-426 (510)
326 1zuh_A Shikimate kinase; alpha 64.7 2.9 0.0001 34.5 2.1 18 70-87 8-25 (168)
327 1iy2_A ATP-dependent metallopr 64.7 3.5 0.00012 37.5 2.8 17 70-86 74-90 (278)
328 1tf5_A Preprotein translocase 64.7 12 0.00042 39.5 7.1 76 328-409 120-209 (844)
329 1znw_A Guanylate kinase, GMP k 64.4 4.2 0.00014 35.0 3.1 18 68-85 19-36 (207)
330 3c8u_A Fructokinase; YP_612366 64.2 4.9 0.00017 34.6 3.5 18 68-85 21-38 (208)
331 3b6e_A Interferon-induced heli 64.1 5.6 0.00019 34.2 3.9 59 332-394 82-141 (216)
332 2v9p_A Replication protein E1; 64.1 8.3 0.00029 35.5 5.2 29 57-85 114-142 (305)
333 2p5t_B PEZT; postsegregational 63.9 4.6 0.00016 36.1 3.4 19 69-87 32-50 (253)
334 2iyv_A Shikimate kinase, SK; t 63.8 3.7 0.00013 34.5 2.6 18 70-87 3-20 (184)
335 1f9v_A Kinesin-like protein KA 63.7 3.6 0.00012 38.8 2.7 24 63-86 77-102 (347)
336 3t61_A Gluconokinase; PSI-biol 63.6 3.1 0.00011 35.6 2.1 18 70-87 19-36 (202)
337 2l82_A Designed protein OR32; 63.5 33 0.0011 25.4 7.1 52 335-389 5-56 (162)
338 2wv9_A Flavivirin protease NS2 63.4 17 0.00058 37.7 8.0 69 101-202 410-478 (673)
339 2ce7_A Cell division protein F 63.3 2.9 9.9E-05 41.4 2.1 19 69-87 49-67 (476)
340 3cmw_A Protein RECA, recombina 63.3 7.1 0.00024 44.9 5.4 49 58-110 21-71 (1706)
341 3b85_A Phosphate starvation-in 63.1 5.8 0.0002 34.3 3.8 28 54-85 11-38 (208)
342 2fsf_A Preprotein translocase 63.0 12 0.00041 39.5 6.6 76 328-409 111-200 (853)
343 3uie_A Adenylyl-sulfate kinase 62.8 3.9 0.00013 35.0 2.6 20 68-87 24-43 (200)
344 3cmu_A Protein RECA, recombina 62.7 6.6 0.00023 45.9 5.0 55 59-118 1069-1125(2050)
345 1sxj_A Activator 1 95 kDa subu 62.7 3.9 0.00013 41.1 2.9 20 69-88 77-96 (516)
346 1via_A Shikimate kinase; struc 62.7 4.7 0.00016 33.5 3.1 17 71-87 6-22 (175)
347 2c95_A Adenylate kinase 1; tra 62.6 3.2 0.00011 35.1 2.0 19 69-87 9-27 (196)
348 3t0q_A AGR253WP; kinesin, alph 62.5 3.4 0.00012 39.0 2.3 24 63-86 78-103 (349)
349 1e6c_A Shikimate kinase; phosp 62.4 3.8 0.00013 33.9 2.4 18 70-87 3-20 (173)
350 3fb4_A Adenylate kinase; psych 62.4 3.4 0.00012 35.8 2.2 17 71-87 2-18 (216)
351 1tev_A UMP-CMP kinase; ploop, 62.3 3.4 0.00012 34.9 2.1 19 69-87 3-21 (196)
352 1zak_A Adenylate kinase; ATP:A 62.2 3.9 0.00013 35.6 2.5 19 69-87 5-23 (222)
353 1xjc_A MOBB protein homolog; s 62.0 9.4 0.00032 31.7 4.7 24 71-95 6-29 (169)
354 2jlq_A Serine protease subunit 62.0 19 0.00064 35.3 7.7 68 102-202 189-256 (451)
355 1zd8_A GTP:AMP phosphotransfer 61.9 3.3 0.00011 36.3 2.0 18 69-86 7-24 (227)
356 2v6i_A RNA helicase; membrane, 61.9 21 0.00071 34.7 8.0 34 101-138 171-204 (431)
357 1gvn_B Zeta; postsegregational 61.8 3.1 0.00011 38.1 1.9 19 69-87 33-51 (287)
358 1aky_A Adenylate kinase; ATP:A 61.8 3.8 0.00013 35.6 2.4 19 69-87 4-22 (220)
359 1q0u_A Bstdead; DEAD protein, 61.8 4.5 0.00015 35.1 2.9 76 332-411 72-158 (219)
360 3o8b_A HCV NS3 protease/helica 61.7 8.9 0.00031 39.6 5.4 66 101-202 396-461 (666)
361 2bdt_A BH3686; alpha-beta prot 61.6 3.6 0.00012 34.7 2.2 18 70-87 3-20 (189)
362 2cdn_A Adenylate kinase; phosp 61.6 4.1 0.00014 34.8 2.5 19 69-87 20-38 (201)
363 3lnc_A Guanylate kinase, GMP k 61.4 3.6 0.00012 36.2 2.2 18 68-85 26-43 (231)
364 3umf_A Adenylate kinase; rossm 61.4 5 0.00017 34.9 3.0 21 68-88 28-48 (217)
365 1nkt_A Preprotein translocase 61.4 15 0.00052 39.0 7.1 77 327-409 147-237 (922)
366 3dkp_A Probable ATP-dependent 61.2 5.7 0.00019 35.1 3.5 77 332-411 98-183 (245)
367 3dl0_A Adenylate kinase; phosp 61.2 3.7 0.00013 35.6 2.2 17 71-87 2-18 (216)
368 3pxi_A Negative regulator of g 61.1 1.9 6.5E-05 45.8 0.3 17 71-87 523-539 (758)
369 1bg2_A Kinesin; motor protein, 61.1 2.5 8.6E-05 39.5 1.1 33 53-85 56-94 (325)
370 3nwn_A Kinesin-like protein KI 61.1 2.3 7.8E-05 40.3 0.8 32 54-85 84-121 (359)
371 1goj_A Kinesin, kinesin heavy 61.0 3.2 0.00011 39.3 1.8 33 53-85 59-97 (355)
372 1z5z_A Helicase of the SNF2/RA 61.0 37 0.0013 30.5 9.0 62 78-146 93-154 (271)
373 1f2t_A RAD50 ABC-ATPase; DNA d 60.8 5.5 0.00019 32.3 3.0 15 71-85 25-39 (149)
374 2ipc_A Preprotein translocase 60.4 15 0.00053 39.1 6.8 62 327-394 115-177 (997)
375 1c9k_A COBU, adenosylcobinamid 60.4 5.6 0.00019 33.4 3.0 33 72-112 2-34 (180)
376 1nks_A Adenylate kinase; therm 60.3 3.5 0.00012 34.8 1.8 17 71-87 3-19 (194)
377 3lre_A Kinesin-like protein KI 59.9 3.1 0.00011 39.3 1.5 34 52-85 83-122 (355)
378 3cf2_A TER ATPase, transitiona 59.7 9.4 0.00032 40.4 5.3 19 69-87 511-529 (806)
379 2wwf_A Thymidilate kinase, put 59.7 4.4 0.00015 34.8 2.4 20 68-87 9-28 (212)
380 2bwj_A Adenylate kinase 5; pho 59.5 3.8 0.00013 34.8 1.9 19 69-87 12-30 (199)
381 2pez_A Bifunctional 3'-phospho 59.4 3.8 0.00013 34.2 1.9 20 68-87 4-23 (179)
382 1qf9_A UMP/CMP kinase, protein 59.3 3.8 0.00013 34.5 1.9 18 70-87 7-24 (194)
383 2vhj_A Ntpase P4, P4; non- hyd 59.3 5 0.00017 37.3 2.8 24 68-91 122-145 (331)
384 3nwj_A ATSK2; P loop, shikimat 59.2 6.2 0.00021 35.2 3.3 19 69-87 48-66 (250)
385 2i3b_A HCR-ntpase, human cance 59.0 6.4 0.00022 33.4 3.2 29 195-223 103-133 (189)
386 3sr0_A Adenylate kinase; phosp 58.9 5.5 0.00019 34.3 2.9 18 71-88 2-19 (206)
387 4a2p_A RIG-I, retinoic acid in 58.9 17 0.00058 36.5 7.0 76 332-411 55-138 (556)
388 3lda_A DNA repair protein RAD5 58.8 8.7 0.0003 37.0 4.5 42 68-109 177-220 (400)
389 1ye8_A Protein THEP1, hypothet 58.8 5.6 0.00019 33.4 2.8 15 71-85 2-16 (178)
390 1zu4_A FTSY; GTPase, signal re 58.7 8.9 0.0003 35.7 4.4 20 69-88 105-124 (320)
391 3bs4_A Uncharacterized protein 58.6 12 0.00042 33.5 5.2 60 60-124 11-71 (260)
392 2y65_A Kinesin, kinesin heavy 58.6 2.9 0.0001 39.7 1.1 34 52-85 62-101 (365)
393 1fnn_A CDC6P, cell division co 58.6 5.2 0.00018 38.2 3.0 17 71-87 46-62 (389)
394 3b6u_A Kinesin-like protein KI 58.6 2.7 9.4E-05 40.0 0.9 34 52-85 79-118 (372)
395 1ukz_A Uridylate kinase; trans 58.5 4.4 0.00015 34.6 2.2 17 70-86 16-32 (203)
396 3m6a_A ATP-dependent protease 58.5 5.3 0.00018 40.4 3.0 20 68-87 107-126 (543)
397 2plr_A DTMP kinase, probable t 58.5 4.2 0.00014 34.9 2.1 19 69-87 4-22 (213)
398 3pxi_A Negative regulator of g 58.4 4 0.00014 43.3 2.2 21 68-88 200-220 (758)
399 4a2q_A RIG-I, retinoic acid in 58.4 20 0.00068 38.2 7.7 76 332-411 296-379 (797)
400 4a14_A Kinesin, kinesin-like p 58.3 3 0.0001 39.3 1.1 35 52-86 61-101 (344)
401 2j37_W Signal recognition part 58.1 39 0.0013 33.5 9.2 36 70-109 102-137 (504)
402 2va8_A SSO2462, SKI2-type heli 58.0 43 0.0015 34.9 10.2 79 101-203 252-362 (715)
403 2v3c_C SRP54, signal recogniti 58.0 8.9 0.00031 37.4 4.5 35 70-108 100-134 (432)
404 2zfi_A Kinesin-like protein KI 57.8 3.2 0.00011 39.5 1.2 32 54-85 69-106 (366)
405 3asz_A Uridine kinase; cytidin 57.8 3.8 0.00013 35.3 1.6 17 69-85 6-22 (211)
406 2pt5_A Shikimate kinase, SK; a 57.7 4.6 0.00016 33.1 2.1 17 71-87 2-18 (168)
407 3kta_A Chromosome segregation 57.6 5.7 0.0002 33.1 2.7 16 71-86 28-43 (182)
408 1nn5_A Similar to deoxythymidy 57.5 4.8 0.00017 34.6 2.3 20 68-87 8-27 (215)
409 3tif_A Uncharacterized ABC tra 57.4 4.7 0.00016 35.7 2.2 18 68-85 30-47 (235)
410 2vli_A Antibiotic resistance p 57.3 4 0.00014 34.1 1.7 19 69-87 5-23 (183)
411 1nij_A Hypothetical protein YJ 57.3 7.8 0.00027 36.0 3.8 15 71-85 6-20 (318)
412 1rj9_A FTSY, signal recognitio 57.2 11 0.00037 34.8 4.7 36 69-108 102-137 (304)
413 1ak2_A Adenylate kinase isoenz 57.1 6.5 0.00022 34.5 3.1 19 69-87 16-34 (233)
414 2ykg_A Probable ATP-dependent 57.0 14 0.00049 38.5 6.2 80 100-204 397-486 (696)
415 1svm_A Large T antigen; AAA+ f 56.9 8.4 0.00029 36.8 4.0 20 66-85 166-185 (377)
416 1cke_A CK, MSSA, protein (cyti 56.9 6 0.00021 34.4 2.8 19 69-87 5-23 (227)
417 2f1r_A Molybdopterin-guanine d 56.8 4.4 0.00015 33.8 1.8 17 71-87 4-20 (171)
418 3b9q_A Chloroplast SRP recepto 56.7 11 0.00037 34.7 4.6 37 68-108 99-135 (302)
419 2nr8_A Kinesin-like protein KI 56.6 3 0.0001 39.5 0.8 32 54-85 83-120 (358)
420 1nlf_A Regulatory protein REPA 56.5 5.8 0.0002 36.0 2.7 25 66-90 27-51 (279)
421 2yvu_A Probable adenylyl-sulfa 56.5 5.8 0.0002 33.3 2.6 21 68-88 12-32 (186)
422 3gbj_A KIF13B protein; kinesin 56.4 3.3 0.00011 39.1 1.1 33 53-85 71-109 (354)
423 2rep_A Kinesin-like protein KI 56.1 4.8 0.00016 38.4 2.1 34 52-85 94-132 (376)
424 3oaa_A ATP synthase subunit al 55.9 75 0.0026 31.4 10.4 36 50-86 144-179 (513)
425 3a4m_A L-seryl-tRNA(SEC) kinas 55.8 5 0.00017 36.0 2.1 19 69-87 4-22 (260)
426 1jjv_A Dephospho-COA kinase; P 55.6 5.2 0.00018 34.3 2.1 16 71-86 4-19 (206)
427 2pbr_A DTMP kinase, thymidylat 55.3 5.3 0.00018 33.7 2.1 16 72-87 3-18 (195)
428 2z0h_A DTMP kinase, thymidylat 55.2 5.4 0.00018 33.7 2.2 17 72-88 3-19 (197)
429 2if2_A Dephospho-COA kinase; a 54.9 4.9 0.00017 34.4 1.9 16 71-86 3-18 (204)
430 1ypw_A Transitional endoplasmi 54.9 6.2 0.00021 42.1 3.0 20 67-86 236-255 (806)
431 2cbz_A Multidrug resistance-as 54.9 5.4 0.00019 35.3 2.2 18 68-85 30-47 (237)
432 1m7g_A Adenylylsulfate kinase; 54.8 5.4 0.00018 34.4 2.1 20 68-87 24-43 (211)
433 2jaq_A Deoxyguanosine kinase; 54.7 6.9 0.00023 33.2 2.8 17 71-87 2-18 (205)
434 1e4v_A Adenylate kinase; trans 54.7 5 0.00017 34.7 1.9 17 71-87 2-18 (214)
435 3nh6_A ATP-binding cassette SU 54.4 6 0.00021 36.5 2.4 19 67-85 78-96 (306)
436 4a2w_A RIG-I, retinoic acid in 54.3 26 0.00087 38.1 7.7 101 79-206 611-721 (936)
437 2owm_A Nckin3-434, related to 54.3 4.2 0.00014 39.7 1.4 33 53-85 115-153 (443)
438 3rc3_A ATP-dependent RNA helic 54.2 40 0.0014 34.9 8.8 79 104-209 323-401 (677)
439 1ry6_A Internal kinesin; kines 54.0 5.8 0.0002 37.5 2.3 17 69-85 83-101 (360)
440 3qf7_A RAD50; ABC-ATPase, ATPa 53.9 7.2 0.00025 37.1 3.0 17 71-87 25-41 (365)
441 2xb4_A Adenylate kinase; ATP-b 53.8 5.6 0.00019 34.7 2.1 17 71-87 2-18 (223)
442 2dhr_A FTSH; AAA+ protein, hex 53.6 6.5 0.00022 39.1 2.7 18 70-87 65-82 (499)
443 3tlx_A Adenylate kinase 2; str 53.4 5.8 0.0002 35.2 2.1 19 69-87 29-47 (243)
444 4e22_A Cytidylate kinase; P-lo 53.1 8 0.00027 34.5 3.0 19 68-86 26-44 (252)
445 3tqc_A Pantothenate kinase; bi 52.9 14 0.00049 34.3 4.7 15 72-86 95-109 (321)
446 3cf2_A TER ATPase, transitiona 52.6 5.5 0.00019 42.2 2.1 18 69-86 238-255 (806)
447 2whx_A Serine protease/ntpase/ 52.5 38 0.0013 34.7 8.3 69 101-202 355-423 (618)
448 3be4_A Adenylate kinase; malar 52.3 7.6 0.00026 33.6 2.7 19 69-87 5-23 (217)
449 4akg_A Glutathione S-transfera 52.2 15 0.00052 44.5 5.9 19 68-86 1266-1284(2695)
450 3tqf_A HPR(Ser) kinase; transf 52.1 7 0.00024 32.6 2.2 20 68-87 15-34 (181)
451 3auy_A DNA double-strand break 51.7 5.6 0.00019 37.9 1.9 16 70-85 26-41 (371)
452 3dc4_A Kinesin-like protein NO 51.6 6.4 0.00022 37.0 2.2 34 53-86 73-112 (344)
453 2ghi_A Transport protein; mult 51.3 6.6 0.00023 35.3 2.2 18 68-85 45-62 (260)
454 2bbw_A Adenylate kinase 4, AK4 51.2 8.7 0.0003 34.0 3.0 18 69-86 27-44 (246)
455 2og2_A Putative signal recogni 51.2 15 0.0005 34.8 4.6 19 69-87 157-175 (359)
456 2p6r_A Afuhel308 helicase; pro 51.2 11 0.00039 39.3 4.3 74 331-411 67-146 (702)
457 2h58_A Kinesin-like protein KI 51.0 6.7 0.00023 36.6 2.2 18 68-85 78-97 (330)
458 2qe7_A ATP synthase subunit al 50.9 90 0.0031 30.8 10.2 38 49-87 143-180 (502)
459 1sgw_A Putative ABC transporte 50.8 8.3 0.00029 33.4 2.7 31 195-225 149-179 (214)
460 4etp_A Kinesin-like protein KA 50.8 7 0.00024 37.7 2.3 20 67-86 137-158 (403)
461 1v8k_A Kinesin-like protein KI 50.7 6.4 0.00022 37.9 2.0 34 53-86 133-172 (410)
462 3h1t_A Type I site-specific re 50.4 68 0.0023 32.4 10.0 82 100-207 438-527 (590)
463 3gk5_A Uncharacterized rhodane 50.0 15 0.0005 27.6 3.7 37 332-371 55-91 (108)
464 3qks_A DNA double-strand break 49.9 9.9 0.00034 32.6 3.0 17 70-86 24-40 (203)
465 1uf9_A TT1252 protein; P-loop, 49.7 8.3 0.00028 32.7 2.5 18 70-87 9-26 (203)
466 3foj_A Uncharacterized protein 49.6 16 0.00055 26.9 3.8 37 332-371 56-92 (100)
467 1wv9_A Rhodanese homolog TT165 49.5 17 0.00059 26.3 3.9 36 333-371 54-89 (94)
468 1vht_A Dephospho-COA kinase; s 49.5 7.3 0.00025 33.7 2.1 18 70-87 5-22 (218)
469 2grj_A Dephospho-COA kinase; T 49.5 7.7 0.00026 33.0 2.2 18 70-87 13-30 (192)
470 1tf7_A KAIC; homohexamer, hexa 49.4 11 0.00037 37.9 3.6 39 58-96 27-66 (525)
471 1pzn_A RAD51, DNA repair and r 49.3 13 0.00045 35.0 4.0 24 27-50 35-58 (349)
472 1htw_A HI0065; nucleotide-bind 49.3 10 0.00035 31.0 2.8 19 67-85 31-49 (158)
473 3dmq_A RNA polymerase-associat 49.2 31 0.0011 37.5 7.4 80 100-207 502-584 (968)
474 3eme_A Rhodanese-like domain p 49.2 15 0.00051 27.2 3.6 37 332-371 56-92 (103)
475 2xxa_A Signal recognition part 49.1 16 0.00056 35.5 4.7 43 70-115 101-145 (433)
476 2vvg_A Kinesin-2; motor protei 48.9 7.5 0.00026 36.6 2.2 35 51-85 66-106 (350)
477 2ff7_A Alpha-hemolysin translo 48.8 8.3 0.00028 34.3 2.4 18 68-85 34-51 (247)
478 3e70_C DPA, signal recognition 48.7 16 0.00053 34.1 4.3 18 69-86 129-146 (328)
479 1mv5_A LMRA, multidrug resista 48.7 6.4 0.00022 34.9 1.6 18 68-85 27-44 (243)
480 2pze_A Cystic fibrosis transme 48.6 8.4 0.00029 33.8 2.4 18 68-85 33-50 (229)
481 1odf_A YGR205W, hypothetical 3 48.4 9.7 0.00033 34.8 2.8 17 70-86 32-48 (290)
482 3gfo_A Cobalt import ATP-bindi 48.4 8.2 0.00028 35.0 2.3 30 196-225 160-189 (275)
483 3fmp_B ATP-dependent RNA helic 48.2 3.8 0.00013 40.7 0.0 74 101-202 333-406 (479)
484 1b0u_A Histidine permease; ABC 48.2 7.9 0.00027 34.8 2.2 30 196-225 170-199 (262)
485 1j8m_F SRP54, signal recogniti 48.1 14 0.00047 33.9 3.8 20 69-88 98-117 (297)
486 1r6b_X CLPA protein; AAA+, N-t 48.1 8.4 0.00029 40.8 2.7 17 71-87 490-506 (758)
487 1t5c_A CENP-E protein, centrom 48.0 7.2 0.00025 36.7 1.9 33 53-85 56-94 (349)
488 3cob_A Kinesin heavy chain-lik 47.9 7.1 0.00024 37.1 1.9 18 68-85 77-96 (369)
489 1x88_A Kinesin-like protein KI 47.7 7.2 0.00025 36.9 1.9 33 53-85 67-105 (359)
490 2heh_A KIF2C protein; kinesin, 47.6 8 0.00027 36.9 2.2 34 53-86 113-152 (387)
491 2ixe_A Antigen peptide transpo 47.6 8.2 0.00028 34.9 2.2 31 195-225 172-202 (271)
492 1vpl_A ABC transporter, ATP-bi 47.6 8.2 0.00028 34.6 2.2 31 195-225 162-192 (256)
493 1ls1_A Signal recognition part 47.6 17 0.0006 33.2 4.4 20 68-87 97-116 (295)
494 1r6b_X CLPA protein; AAA+, N-t 47.5 9.6 0.00033 40.4 3.0 21 68-88 206-226 (758)
495 2wbe_C Bipolar kinesin KRP-130 47.4 8.1 0.00028 36.8 2.2 33 53-85 79-117 (373)
496 1ltq_A Polynucleotide kinase; 47.3 8.1 0.00028 35.4 2.1 17 71-87 4-20 (301)
497 1rz3_A Hypothetical protein rb 47.2 9.8 0.00034 32.4 2.5 19 69-87 22-40 (201)
498 3u06_A Protein claret segregat 47.1 8.3 0.00028 37.2 2.2 19 67-85 135-155 (412)
499 1uj2_A Uridine-cytidine kinase 46.7 8.6 0.00029 34.2 2.2 17 71-87 24-40 (252)
500 2zu0_C Probable ATP-dependent 46.7 11 0.00037 34.0 2.8 19 67-85 44-62 (267)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.7e-61 Score=484.85 Aligned_cols=369 Identities=25% Similarity=0.423 Sum_probs=320.5
Q ss_pred CcccCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhc
Q 010111 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (518)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~ 97 (518)
|.+..+|+++. |++.+.++|+++||.+|+|+|.+||+.++. |+|++++||||||||++|++|+++.+...
T Consensus 52 p~~~~~f~~~~------l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~----g~d~i~~a~TGsGKT~a~~lpil~~l~~~ 121 (434)
T 2db3_A 52 PQPIQHFTSAD------LRDIIIDNVNKSGYKIPTPIQKCSIPVISS----GRDLMACAQTGSGKTAAFLLPILSKLLED 121 (434)
T ss_dssp CCCCCCGGGSC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHS
T ss_pred CCCcCChhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhc----CCCEEEECCCCCCchHHHHHHHHHHHHhc
Confidence 44555666664 999999999999999999999999998874 89999999999999999999999998764
Q ss_pred c----cCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCC
Q 010111 98 A----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 173 (518)
Q Consensus 98 ~----~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (518)
. ..++++||++||++|+.|+++.+++++...++++.+++|+.+...+.. .+..++
T Consensus 122 ~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---------------------~l~~~~ 180 (434)
T 2db3_A 122 PHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNE---------------------CITRGC 180 (434)
T ss_dssp CCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHH---------------------HHTTCC
T ss_pred ccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHH---------------------HhhcCC
Confidence 3 236789999999999999999999999888899999999988766543 345678
Q ss_pred cEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhcc
Q 010111 174 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC 253 (518)
Q Consensus 174 ~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (518)
+|+|+||++|.+++.+ ....+.++++||+||||+|++.+|...+..++..+...
T Consensus 181 ~Ivv~Tp~~l~~~l~~-~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~------------------------- 234 (434)
T 2db3_A 181 HVVIATPGRLLDFVDR-TFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMR------------------------- 234 (434)
T ss_dssp SEEEECHHHHHHHHHT-TSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSC-------------------------
T ss_pred CEEEEChHHHHHHHHh-CCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCC-------------------------
Confidence 9999999999999987 45678999999999999999999999998888764311
Q ss_pred ccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCC
Q 010111 254 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE 333 (518)
Q Consensus 254 ~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~ 333 (518)
+..|.+++|||++.....+....+.++..+...... .....+.+....+....|...+..++.....
T Consensus 235 -----------~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~- 301 (434)
T 2db3_A 235 -----------PEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG-GACSDVKQTIYEVNKYAKRSKLIEILSEQAD- 301 (434)
T ss_dssp -----------SSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTT-CCCTTEEEEEEECCGGGHHHHHHHHHHHCCT-
T ss_pred -----------CCceEEEEeccCCHHHHHHHHHhccCCEEEEecccc-ccccccceEEEEeCcHHHHHHHHHHHHhCCC-
Confidence 233889999999988888888888888877766543 2334566666677778888889888887654
Q ss_pred cEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCC
Q 010111 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 413 (518)
Q Consensus 334 ~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p 413 (518)
++||||++++.|+.+++.|...+ +.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~~---~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p 378 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEKE---FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMP 378 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTT---CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCC
T ss_pred CEEEEEeCcHHHHHHHHHHHhCC---CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCC
Confidence 49999999999999999999866 899999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhhhhhcccCCCCCcEEEEeec-chhHHHHHHHHHHHhhcC
Q 010111 414 AYIKTYIHRAGRTARAGQLGRCFTLLHK-DEVCLVKRFKKLLQKADN 459 (518)
Q Consensus 414 ~s~~~~~Qr~GR~gR~g~~g~~~~~~~~-~e~~~~~~~~~~l~~~~~ 459 (518)
.+...|+||+||+||.|+.|.+++|+++ ++....+.+.+.++...+
T Consensus 379 ~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~ 425 (434)
T 2db3_A 379 SKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQ 425 (434)
T ss_dssp SSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTC
T ss_pred CCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999994 577788889999887654
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.3e-57 Score=456.20 Aligned_cols=372 Identities=28% Similarity=0.434 Sum_probs=315.2
Q ss_pred CCcccCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhh
Q 010111 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (518)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~ 96 (518)
.|.+..+|++++ +++.+.++|..+||.+|+|+|.++++.++. ++|++++||||+|||++|++|+++.+..
T Consensus 10 ~p~~~~~f~~~~------l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~~l~~~~~ 79 (417)
T 2i4i_A 10 CPPHIESFSDVE------MGEIIMGNIELTRYTRPTPVQKHAIPIIKE----KRDLMACAQTGSGKTAAFLLPILSQIYS 79 (417)
T ss_dssp CCCCCSSGGGSC------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCcccCCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHcc----CCCEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 356667788886 999999999999999999999999998874 8999999999999999999999998765
Q ss_pred ccc-----------------CCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCcc
Q 010111 97 RAV-----------------RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159 (518)
Q Consensus 97 ~~~-----------------~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~ 159 (518)
... .++++||++||++|+.|+++.+++++...++++..++|+.........
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------------ 147 (417)
T 2i4i_A 80 DGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRD------------ 147 (417)
T ss_dssp HCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHH------------
T ss_pred ccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHH------------
Confidence 321 135799999999999999999999988888999999999887665432
Q ss_pred CCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccc
Q 010111 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239 (518)
Q Consensus 160 ~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 239 (518)
+..+++|+|+||++|.+.+.. ..+.+.++++||+||||++++.+|...+..++.......
T Consensus 148 ---------~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~---------- 207 (417)
T 2i4i_A 148 ---------LERGCHLLVATPGRLVDMMER-GKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP---------- 207 (417)
T ss_dssp ---------HTTCCSEEEECHHHHHHHHHT-TSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCC----------
T ss_pred ---------hhCCCCEEEEChHHHHHHHHc-CCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCC----------
Confidence 345689999999999999887 456788999999999999999988888888776432110
Q ss_pred cccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCc
Q 010111 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLK 319 (518)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 319 (518)
....+.+++|||++.....+....+..+..+...... .....+.+....+....+
T Consensus 208 ------------------------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~ 262 (417)
T 2i4i_A 208 ------------------------KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEESDK 262 (417)
T ss_dssp ------------------------BTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-----CCSSEEEEEEECCGGGH
T ss_pred ------------------------cCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCC-CCccCceEEEEEeccHhH
Confidence 0123789999999888777777777777766654432 334455666666777788
Q ss_pred HHHHHHHHHhc-CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccC
Q 010111 320 PLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398 (518)
Q Consensus 320 ~~~l~~~l~~~-~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 398 (518)
...+..+++.. .++++||||++++.++.+++.|...+ +.+..+||++++.+|..+++.|++|+.+|||||+++++|
T Consensus 263 ~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 339 (417)
T 2i4i_A 263 RSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG---YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 339 (417)
T ss_dssp HHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTT
T ss_pred HHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCC---CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcC
Confidence 88888888876 46789999999999999999999865 899999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHHhhc
Q 010111 399 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQKAD 458 (518)
Q Consensus 399 iDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~~~ 458 (518)
+|+|++++||++|+|.+...|+||+||+||.|+.|.+++|+++.|...++.+.+.++...
T Consensus 340 idip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~ 399 (417)
T 2i4i_A 340 LDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 399 (417)
T ss_dssp SCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTT
T ss_pred CCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999998887754
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.6e-56 Score=449.95 Aligned_cols=354 Identities=24% Similarity=0.432 Sum_probs=304.5
Q ss_pred CCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHH
Q 010111 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (518)
Q Consensus 34 ~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~L 113 (518)
++++.+.+++..+||.+|+|+|.++++.++. ++++++.+|||+|||++|++|+++.+... ..+.++||++||++|
T Consensus 43 ~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-~~~~~~lil~Pt~~L 117 (410)
T 2j0s_A 43 GLREDLLRGIYAYGFEKPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQ-VRETQALILAPTREL 117 (410)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTT-SCSCCEEEECSSHHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCCchHHHHHHHHHHHhhc-cCCceEEEEcCcHHH
Confidence 3999999999999999999999999998874 89999999999999999999999887543 245689999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCC
Q 010111 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (518)
Q Consensus 114 a~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~ 193 (518)
+.|+.+.+.+++...++.+..++|+......... +..+++|+|+||++|.+.+.+ ..+
T Consensus 118 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~~~ivv~Tp~~l~~~l~~-~~~ 175 (410)
T 2j0s_A 118 AVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK---------------------LDYGQHVVAGTPGRVFDMIRR-RSL 175 (410)
T ss_dssp HHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHH---------------------HHHCCSEEEECHHHHHHHHHT-TSS
T ss_pred HHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHH---------------------hhcCCCEEEcCHHHHHHHHHh-CCc
Confidence 9999999999998889999999999887665443 334679999999999999987 456
Q ss_pred CCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEe
Q 010111 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (518)
Q Consensus 194 ~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (518)
.+.++++||+||||++++.++...+..++..++ +..+.+++|
T Consensus 176 ~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~--------------------------------------~~~~~i~~S 217 (410)
T 2j0s_A 176 RTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP--------------------------------------PATQVVLIS 217 (410)
T ss_dssp CCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSC--------------------------------------TTCEEEEEE
T ss_pred cHhheeEEEEccHHHHHhhhhHHHHHHHHHhCc--------------------------------------cCceEEEEE
Confidence 788899999999999999988888777776543 123789999
Q ss_pred EeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCC-CCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHH
Q 010111 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES-KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (518)
Q Consensus 274 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L 352 (518)
||++..........+..|..+....... ....+.++...... ..+...+..++.....+++||||++++.++.+++.|
T Consensus 218 AT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L 296 (410)
T 2j0s_A 218 ATLPHEILEMTNKFMTDPIRILVKRDEL-TLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKM 296 (410)
T ss_dssp SCCCHHHHTTGGGTCSSCEEECCCGGGC-SCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCEEEEecCccc-cCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHH
Confidence 9998877777777777887765544332 23344444444444 448888888888888889999999999999999999
Q ss_pred hhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCC
Q 010111 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432 (518)
Q Consensus 353 ~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~ 432 (518)
...+ +.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++|+|.+...|+||+||+||.|+.
T Consensus 297 ~~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~ 373 (410)
T 2j0s_A 297 REAN---FTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRK 373 (410)
T ss_dssp HHTT---CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCC
T ss_pred HhCC---CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCc
Confidence 9866 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeecchhHHHHHHHHHHHh
Q 010111 433 GRCFTLLHKDEVCLVKRFKKLLQK 456 (518)
Q Consensus 433 g~~~~~~~~~e~~~~~~~~~~l~~ 456 (518)
|.+++|+++.|...++.+.++++.
T Consensus 374 g~~~~~~~~~~~~~~~~i~~~~~~ 397 (410)
T 2j0s_A 374 GVAINFVKNDDIRILRDIEQYYST 397 (410)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred eEEEEEecHHHHHHHHHHHHHhCC
Confidence 999999999999777777766543
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=7.1e-55 Score=436.67 Aligned_cols=359 Identities=28% Similarity=0.475 Sum_probs=306.6
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccC
Q 010111 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (518)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~ 100 (518)
..+|++++ +++.+.++|.++||.+|+|+|.++++.++. ++++++.+|||+|||++|++|++..+... ..
T Consensus 20 ~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~-~~ 88 (400)
T 1s2m_A 20 GNTFEDFY------LKRELLMGIFEAGFEKPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPK-LN 88 (400)
T ss_dssp -CCGGGGC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTT-SC
T ss_pred cCChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhc-cC
Confidence 34566665 999999999999999999999999998874 79999999999999999999999887653 24
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
+.++||++|+++|+.|+.+.+++++...++++...+|+........ .+..+++|+|+||
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~Ivv~T~ 147 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL---------------------RLNETVHILVGTP 147 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHH---------------------HTTSCCSEEEECH
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHH---------------------HhcCCCCEEEEch
Confidence 5589999999999999999999999888999999999987665533 2345689999999
Q ss_pred hHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCC
Q 010111 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (518)
++|.+.+.+ ....+.++++||+||||++.+.++...+..++..++
T Consensus 148 ~~l~~~~~~-~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~---------------------------------- 192 (400)
T 1s2m_A 148 GRVLDLASR-KVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP---------------------------------- 192 (400)
T ss_dssp HHHHHHHHT-TCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSC----------------------------------
T ss_pred HHHHHHHHh-CCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCC----------------------------------
Confidence 999998876 446688999999999999999988888887776543
Q ss_pred CCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcC
Q 010111 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 340 (518)
Q Consensus 261 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~ 340 (518)
+..+.+++|||++..........+..|..+..... .....+..+........+...+..++.....+++||||+
T Consensus 193 ----~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~ 266 (400)
T 1s2m_A 193 ----PTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCN 266 (400)
T ss_dssp ----SSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECS
T ss_pred ----cCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEe
Confidence 12378999999988777777777777765544332 223445566666677788888888888888889999999
Q ss_pred ChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchh
Q 010111 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 420 (518)
Q Consensus 341 s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~ 420 (518)
+++.++.+++.|...+ +.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.+...|+
T Consensus 267 ~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~ 343 (400)
T 1s2m_A 267 STNRVELLAKKITDLG---YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYL 343 (400)
T ss_dssp SHHHHHHHHHHHHHHT---CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHH
T ss_pred cHHHHHHHHHHHHhcC---CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHH
Confidence 9999999999999876 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHH
Q 010111 421 HRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQ 455 (518)
Q Consensus 421 Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~ 455 (518)
||+||+||.|+.|.|++|+++.|...++.+.+.+.
T Consensus 344 Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~ 378 (400)
T 1s2m_A 344 HRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELG 378 (400)
T ss_dssp HHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred HhcchhcCCCCCceEEEEeccchHHHHHHHHHHhC
Confidence 99999999999999999999999966666665543
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.2e-55 Score=442.49 Aligned_cols=355 Identities=25% Similarity=0.422 Sum_probs=291.5
Q ss_pred CCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHH
Q 010111 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (518)
Q Consensus 34 ~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~L 113 (518)
++++.+.+.+.++||..|+++|.++++.++. |+++++.+|||+|||++|++|+++.+... ..+.++||++||++|
T Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-~~~~~~lil~P~~~L 120 (414)
T 3eiq_A 46 NLSESLLRGIYAYGFEKPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELD-LKATQALVLAPTREL 120 (414)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEECCCSCSSSHHHHHHHHHHHCCTT-SCSCCEEEECSSHHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHhHHHhC----CCCEEEECCCCCcccHHHHHHHHHHHhhc-CCceeEEEEeChHHH
Confidence 4899999999999999999999999988875 89999999999999999999999987654 245689999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCC
Q 010111 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (518)
Q Consensus 114 a~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~ 193 (518)
+.|+.+.+++++...+..+...+|+.........+ ...+++|+|+||++|.+.+.+ ..+
T Consensus 121 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~iiv~T~~~l~~~l~~-~~~ 179 (414)
T 3eiq_A 121 AQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKL--------------------QMEAPHIIVGTPGRVFDMLNR-RYL 179 (414)
T ss_dssp HHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHH--------------------TTTCCSEEEECHHHHHHHHHH-TSS
T ss_pred HHHHHHHHHHHhcccCceEEEEECCcchHHHHHHH--------------------hcCCCCEEEECHHHHHHHHHc-CCc
Confidence 99999999999988899999999998876654432 225689999999999999987 456
Q ss_pred CCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEe
Q 010111 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (518)
Q Consensus 194 ~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (518)
.+.++++||+||||++.+.++...+..++..+. +..+.+++|
T Consensus 180 ~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~i~~S 221 (414)
T 3eiq_A 180 SPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLN--------------------------------------SNTQVVLLS 221 (414)
T ss_dssp CSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSC--------------------------------------TTCEEEEEC
T ss_pred ccccCcEEEEECHHHhhccCcHHHHHHHHHhCC--------------------------------------CCCeEEEEE
Confidence 788899999999999998888888877776543 223789999
Q ss_pred EeecCChhhhhhccCCCCeEEeeCCccccCccccceeee-ecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHH
Q 010111 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL-ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (518)
Q Consensus 274 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L 352 (518)
||++..........+.++..+......... ..+.+... ......+...+..++.....+++||||++++.++.+++.|
T Consensus 222 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l 300 (414)
T 3eiq_A 222 ATMPSDVLEVTKKFMRDPIRILVKKEELTL-EGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKM 300 (414)
T ss_dssp SCCCHHHHHHHTTTCSSCEEECCCCCCCCT-TSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHH
T ss_pred EecCHHHHHHHHHHcCCCEEEEecCCccCC-CCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHH
Confidence 999888888888888888777665544333 33444444 3445568888889998888899999999999999999999
Q ss_pred hhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCC
Q 010111 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432 (518)
Q Consensus 353 ~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~ 432 (518)
...+ +.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+...|+||+||+||.|+.
T Consensus 301 ~~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~ 377 (414)
T 3eiq_A 301 HARD---FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRK 377 (414)
T ss_dssp HTTT---CCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC------
T ss_pred HhcC---CeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCC
Confidence 8765 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeecchhHHHHHHHHHHHh
Q 010111 433 GRCFTLLHKDEVCLVKRFKKLLQK 456 (518)
Q Consensus 433 g~~~~~~~~~e~~~~~~~~~~l~~ 456 (518)
|.|++|+++.|...++.+.++++.
T Consensus 378 g~~~~~~~~~~~~~~~~~~~~~~~ 401 (414)
T 3eiq_A 378 GVAINMVTEEDKRTLRDIETFYNT 401 (414)
T ss_dssp -CEEEEECSTHHHHHHHHHHHTTC
T ss_pred ceEEEEEcHHHHHHHHHHHHHHcC
Confidence 999999999999777777766543
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.4e-54 Score=431.62 Aligned_cols=359 Identities=25% Similarity=0.354 Sum_probs=303.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCC
Q 010111 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (518)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~ 101 (518)
++|+++. +++.+.++|.++||..|+|+|.++++.++. ++++++.+|||+|||++|++|++..+... ..+
T Consensus 8 ~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-~~~ 76 (391)
T 1xti_A 8 SGFRDFL------LKPELLRAIVDCGFEHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPV-TGQ 76 (391)
T ss_dssp -CGGGGC------CCHHHHHHHHHHSCCSCCHHHHHHHHHHTT----TCCEEEECSSCSSHHHHHHHHHHHHCCCC-TTC
T ss_pred CChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHhhccc-CCC
Confidence 4566665 999999999999999999999999988774 89999999999999999999999887553 245
Q ss_pred ccEEEEcCcHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 102 LRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 102 ~~~lil~Pt~~La~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
.++||++||++|+.|+.+.+.++.... ++++..++|+.........+. ...++|+|+||
T Consensus 77 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------------------~~~~~iiv~T~ 136 (391)
T 1xti_A 77 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK--------------------KNCPHIVVGTP 136 (391)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHH--------------------HSCCSEEEECH
T ss_pred eeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHh--------------------cCCCCEEEECH
Confidence 589999999999999999999998766 789999999988666543321 23479999999
Q ss_pred hHHHHhHhcCCCCCCCcccEEEEechhHhhh-HhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCC
Q 010111 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vViDEah~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (518)
+++.+.+.. ....+.++++||+||||++.+ .++...+..++...+
T Consensus 137 ~~l~~~~~~-~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~--------------------------------- 182 (391)
T 1xti_A 137 GRILALARN-KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP--------------------------------- 182 (391)
T ss_dssp HHHHHHHHT-TSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSC---------------------------------
T ss_pred HHHHHHHHc-CCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCC---------------------------------
Confidence 999998877 456788999999999999987 467666666665432
Q ss_pred CCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEc
Q 010111 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 339 (518)
Q Consensus 260 ~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~ 339 (518)
...+.+++|||++..........+..|..+............+..+........+...+..+++....+++||||
T Consensus 183 -----~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~ 257 (391)
T 1xti_A 183 -----HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFV 257 (391)
T ss_dssp -----SSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEEC
T ss_pred -----CCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEe
Confidence 123789999999998888888888888777665544344455666777777788888899999888889999999
Q ss_pred CChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccch
Q 010111 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419 (518)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~ 419 (518)
++++.++.+++.|...+ +.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.+...|
T Consensus 258 ~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~ 334 (391)
T 1xti_A 258 KSVQRCIALAQLLVEQN---FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTY 334 (391)
T ss_dssp SCHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHH
T ss_pred CcHHHHHHHHHHHHhCC---CcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHH
Confidence 99999999999999865 889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccCCCCCcEEEEeecchh-HHHHHHHHH
Q 010111 420 IHRAGRTARAGQLGRCFTLLHKDEV-CLVKRFKKL 453 (518)
Q Consensus 420 ~Qr~GR~gR~g~~g~~~~~~~~~e~-~~~~~~~~~ 453 (518)
+||+||+||.|+.|.+++|+++.+. ..++.+.+.
T Consensus 335 ~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~ 369 (391)
T 1xti_A 335 LHRVARAGRFGTKGLAITFVSDENDAKILNDVQDR 369 (391)
T ss_dssp HHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHH
T ss_pred HHhcccccCCCCceEEEEEEcccchHHHHHHHHHH
Confidence 9999999999999999999987643 344444443
No 7
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.4e-54 Score=432.18 Aligned_cols=380 Identities=22% Similarity=0.350 Sum_probs=303.2
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccC
Q 010111 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (518)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~ 100 (518)
..+|++++ +++.+.+++.++||..|+|+|.++++.++.. .+++++++||||+|||++|++|++..+... ..
T Consensus 4 ~~~f~~~~------l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-~~ 74 (395)
T 3pey_A 4 AKSFDELG------LAPELLKGIYAMKFQKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-DA 74 (395)
T ss_dssp CCSSTTSC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTT-CC
T ss_pred ccCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccC-CC
Confidence 45677775 9999999999999999999999999998752 238999999999999999999999887654 24
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
+.++||++||++|+.|+++.+++++...++.+...+++..... ...+++|+|+||
T Consensus 75 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~iiv~T~ 129 (395)
T 3pey_A 75 SPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN-------------------------KQINAQVIVGTP 129 (395)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT-------------------------SCBCCSEEEECH
T ss_pred CccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh-------------------------ccCCCCEEEEcH
Confidence 5689999999999999999999998888888888877653211 124679999999
Q ss_pred hHHHHhHhcCCCCCCCcccEEEEechhHhhh-HhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCC
Q 010111 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vViDEah~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (518)
+++.+.+.+ ....+.++++||+||||++.+ .++...+..+...++
T Consensus 130 ~~l~~~~~~-~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~--------------------------------- 175 (395)
T 3pey_A 130 GTVLDLMRR-KLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLP--------------------------------- 175 (395)
T ss_dssp HHHHHHHHT-TCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSC---------------------------------
T ss_pred HHHHHHHHc-CCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCC---------------------------------
Confidence 999998877 456788999999999999987 566666666655543
Q ss_pred CCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeec-CCCCcHHHHHHHHHhcCCCcEEEE
Q 010111 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC-ESKLKPLYLVALLQSLGEEKCIVF 338 (518)
Q Consensus 260 ~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~lVf 338 (518)
+..+.+++|||++..........+..+..+......... ..+....... ....+...+..++.....+++|||
T Consensus 176 -----~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf 249 (395)
T 3pey_A 176 -----KDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNV-DAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIF 249 (395)
T ss_dssp -----TTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSC-TTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEE
T ss_pred -----CCcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccccccc-ccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEE
Confidence 123789999999887777777777777666555443333 2333333333 445666777777777778899999
Q ss_pred cCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCC----
Q 010111 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA---- 414 (518)
Q Consensus 339 ~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~---- 414 (518)
|+++..++.+++.|+..+ +.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++|+|.
T Consensus 250 ~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~ 326 (395)
T 3pey_A 250 VATKKTANVLYGKLKSEG---HEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANG 326 (395)
T ss_dssp CSCHHHHHHHHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTS
T ss_pred eCCHHHHHHHHHHHHhcC---CcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcC
Confidence 999999999999999875 8899999999999999999999999999999999999999999999999999998
Q ss_pred --CccchhhhhhhcccCCCCCcEEEEeecch-hHHHHHHHHHHHhhcCCCCCccCCCchhhhhhHHHHHHH
Q 010111 415 --YIKTYIHRAGRTARAGQLGRCFTLLHKDE-VCLVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSA 482 (518)
Q Consensus 415 --s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (518)
+...|+||+||+||.|+.|.+++|+++.+ ...++.+.+.+.. .....++....+.+.+.+++.
T Consensus 327 ~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 392 (395)
T 3pey_A 327 QADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGD-----IEMTRVPTDDWDEVEKIVKKV 392 (395)
T ss_dssp SBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTS-----CCCEECCSSCHHHHHHHHHHH
T ss_pred CCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCC-----ceeecCChHHHHHHHHHHHHh
Confidence 89999999999999999999999998654 4344444444321 223345554555555544443
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.4e-54 Score=436.48 Aligned_cols=361 Identities=24% Similarity=0.375 Sum_probs=297.8
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhccc
Q 010111 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (518)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~ 99 (518)
+..+|++++ +++.+.++|.++||..|+|+|.++++.++.. .+++++++||||+|||++|++|+++.+... .
T Consensus 23 ~~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-~ 93 (412)
T 3fht_A 23 SVKSFEELR------LKPQLLQGVYAMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-N 93 (412)
T ss_dssp CSSCTGGGT------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTT-S
T ss_pred ccCCHhhCC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhc-C
Confidence 345566664 9999999999999999999999999998862 249999999999999999999999987664 3
Q ss_pred CCccEEEEcCcHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEe
Q 010111 100 RCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (518)
Q Consensus 100 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~ 178 (518)
.+.++||++||++|+.|+++.++++.... +..+....++...... ....++|+|+
T Consensus 94 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~ivv~ 149 (412)
T 3fht_A 94 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG------------------------QKISEQIVIG 149 (412)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT------------------------CCCCCSEEEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh------------------------hcCCCCEEEE
Confidence 45689999999999999999999987764 5777777777643221 2345799999
Q ss_pred CChHHHHhHhcCCCCCCCcccEEEEechhHhhh-HhHHhHHHHHHHhcccccccccCCcccccccccccchhhhcccccc
Q 010111 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (518)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (518)
||+++.+.+.+.+.+.+.++++||+||||++.+ .++...+..+...++
T Consensus 150 T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~------------------------------- 198 (412)
T 3fht_A 150 TPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP------------------------------- 198 (412)
T ss_dssp CHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSC-------------------------------
T ss_pred CchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCC-------------------------------
Confidence 999999999776667789999999999999987 566666666665543
Q ss_pred CCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeec-CCCCcHHHHHHHHHhcCCCcEE
Q 010111 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC-ESKLKPLYLVALLQSLGEEKCI 336 (518)
Q Consensus 258 ~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~l 336 (518)
...+.+++|||++..........+..+..+........ ...+.+..... ....+...+..++.....+++|
T Consensus 199 -------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 270 (412)
T 3fht_A 199 -------RNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEET-LDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAM 270 (412)
T ss_dssp -------TTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSS-CTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEE
T ss_pred -------CCceEEEEEeecCHHHHHHHHHhcCCCeEEeecccccc-ccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEE
Confidence 12388999999998887888888888877766554333 33344444333 3456777888888888889999
Q ss_pred EEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCC--
Q 010111 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-- 414 (518)
Q Consensus 337 Vf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~-- 414 (518)
|||+++..++.+++.|...+ +.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++|+|.
T Consensus 271 vf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~ 347 (412)
T 3fht_A 271 IFCHTRKTASWLAAELSKEG---HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDK 347 (412)
T ss_dssp EECSSHHHHHHHHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCS
T ss_pred EEeCCHHHHHHHHHHHHhCC---CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCC
Confidence 99999999999999999875 8999999999999999999999999999999999999999999999999999995
Q ss_pred ----CccchhhhhhhcccCCCCCcEEEEeecch-hHHHHHHHHHHH
Q 010111 415 ----YIKTYIHRAGRTARAGQLGRCFTLLHKDE-VCLVKRFKKLLQ 455 (518)
Q Consensus 415 ----s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e-~~~~~~~~~~l~ 455 (518)
+...|+||+||+||.|+.|.+++++++.+ ...++.+++.++
T Consensus 348 ~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 393 (412)
T 3fht_A 348 DGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFN 393 (412)
T ss_dssp SSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHT
T ss_pred CCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHC
Confidence 56799999999999999999999998765 666666666654
No 9
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.1e-53 Score=446.54 Aligned_cols=368 Identities=28% Similarity=0.420 Sum_probs=295.2
Q ss_pred CCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcc---cCCccEEEEcCc
Q 010111 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPT 110 (518)
Q Consensus 34 ~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~---~~~~~~lil~Pt 110 (518)
.|++++.+++..+||..|+|+|.++++.++.. .++++++.||||+|||++|++|+++.+.... ..+.++||++||
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~--~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Pt 104 (579)
T 3sqw_A 27 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPT 104 (579)
T ss_dssp SSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcc--CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcch
Confidence 38999999999999999999999999988731 3789999999999999999999999987753 235689999999
Q ss_pred HHHHHHHHHHHHHhccc----cCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHh
Q 010111 111 RDLALQVKDVFAAIAPA----VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186 (518)
Q Consensus 111 ~~La~Q~~~~~~~~~~~----~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~ 186 (518)
++|+.|+.+.++++... ....+..++|+.........+ ...+++|+|+||++|.++
T Consensus 105 r~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l--------------------~~~~~~IlV~Tp~~l~~~ 164 (579)
T 3sqw_A 105 RDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKM--------------------NKLRPNIVIATPGRLIDV 164 (579)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHH--------------------HHHCCSEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHH--------------------hcCCCCEEEECHHHHHHH
Confidence 99999999999987532 346788888888776654432 124679999999999998
Q ss_pred HhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCc
Q 010111 187 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266 (518)
Q Consensus 187 l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (518)
+.+.....+..+++||+||||++++++|...+..++..++..... ..+.
T Consensus 165 l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~-------------------------------~~~~ 213 (579)
T 3sqw_A 165 LEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSK-------------------------------SADN 213 (579)
T ss_dssp HHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSS-------------------------------CTTC
T ss_pred HHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcc-------------------------------cccC
Confidence 876333457889999999999999999999999888876532211 0123
Q ss_pred eeeEEEeEeecCChhhhhhccCCCCeEEeeCCcc---ccCccccceeeeecCCC-CcHH----HHHHHHHh-cCCCcEEE
Q 010111 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR---YKLPERLESYKLICESK-LKPL----YLVALLQS-LGEEKCIV 337 (518)
Q Consensus 267 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~k~~----~l~~~l~~-~~~~~~lV 337 (518)
.+.+++|||++..+..+....+..+......... ......+.+........ .+.. .+...+.. ..+.++||
T Consensus 214 ~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iV 293 (579)
T 3sqw_A 214 IKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAII 293 (579)
T ss_dssp CEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEE
Confidence 4899999999988888888888877655443221 12223333333333332 2221 22222332 45679999
Q ss_pred EcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCcc
Q 010111 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417 (518)
Q Consensus 338 f~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~ 417 (518)
||+++..|+.+++.|......++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||++++|.++.
T Consensus 294 F~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~ 373 (579)
T 3sqw_A 294 FAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELA 373 (579)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTT
T ss_pred ECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHH
Confidence 99999999999999987633358999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHH
Q 010111 418 TYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLL 454 (518)
Q Consensus 418 ~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l 454 (518)
.|+||+||+||.|+.|.|++|+++.|..+++.+++..
T Consensus 374 ~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 374 NYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp HHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred HhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHh
Confidence 9999999999999999999999999997777776653
No 10
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.4e-53 Score=443.97 Aligned_cols=368 Identities=28% Similarity=0.421 Sum_probs=293.8
Q ss_pred CCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhccc---CCccEEEEcCc
Q 010111 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---RCLRALVVLPT 110 (518)
Q Consensus 34 ~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~---~~~~~lil~Pt 110 (518)
.|++.+.+++..+||..|+|+|.++++.++.. .++|++++||||||||++|++|+++.+..... .+.++||++||
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~--~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Pt 155 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPT 155 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCc
Confidence 38999999999999999999999999988731 37899999999999999999999999877532 24589999999
Q ss_pred HHHHHHHHHHHHHhccc----cCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHh
Q 010111 111 RDLALQVKDVFAAIAPA----VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186 (518)
Q Consensus 111 ~~La~Q~~~~~~~~~~~----~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~ 186 (518)
++|+.|+++.++++... ....+..++|+.........+ ...+++|+|+||++|.++
T Consensus 156 r~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------------------~~~~~~Iiv~Tp~~l~~~ 215 (563)
T 3i5x_A 156 RDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKM--------------------NKLRPNIVIATPGRLIDV 215 (563)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHH--------------------HHHCCSEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHH--------------------hcCCCCEEEECcHHHHHH
Confidence 99999999999987432 246688888888766654432 234689999999999998
Q ss_pred HhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCc
Q 010111 187 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266 (518)
Q Consensus 187 l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (518)
+.+.....++.+++||+||||++++.+|...+..++..++..... ..+.
T Consensus 216 l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~-------------------------------~~~~ 264 (563)
T 3i5x_A 216 LEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSK-------------------------------SADN 264 (563)
T ss_dssp HHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSS-------------------------------CTTC
T ss_pred HHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhcccc-------------------------------CccC
Confidence 876333457889999999999999999999999888876532211 1123
Q ss_pred eeeEEEeEeecCChhhhhhccCCCCeEEeeCCcc---ccCccccceeeeecCCC-CcHH----HHHHHHHh-cCCCcEEE
Q 010111 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR---YKLPERLESYKLICESK-LKPL----YLVALLQS-LGEEKCIV 337 (518)
Q Consensus 267 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~k~~----~l~~~l~~-~~~~~~lV 337 (518)
.|.+++|||++..+..+....+..+......... ......+.......... .+.. .+...+.. ..+.++||
T Consensus 265 ~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iV 344 (563)
T 3i5x_A 265 IKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAII 344 (563)
T ss_dssp CEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEE
Confidence 4899999999988888888888776655443221 12222333333333332 2222 22222222 45679999
Q ss_pred EcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCcc
Q 010111 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417 (518)
Q Consensus 338 f~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~ 417 (518)
||+++..|+.+++.|......++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||++++|.++.
T Consensus 345 F~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~ 424 (563)
T 3i5x_A 345 FAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELA 424 (563)
T ss_dssp ECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTT
T ss_pred EcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchh
Confidence 99999999999999987633458999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHH
Q 010111 418 TYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLL 454 (518)
Q Consensus 418 ~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l 454 (518)
.|+||+||+||.|+.|.|++|+++.|...++.+.+..
T Consensus 425 ~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 425 NYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp HHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred hhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 9999999999999999999999999997777666553
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.7e-53 Score=417.88 Aligned_cols=354 Identities=27% Similarity=0.460 Sum_probs=298.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCC
Q 010111 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (518)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~ 101 (518)
.+|++++ +++.+.++|+++||.+|+|+|.++++.++. .++++++.+|||+|||++|++|+++.+... .+
T Consensus 6 ~~f~~~~------l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~--~~ 74 (367)
T 1hv8_A 6 MNFNELN------LSDNILNAIRNKGFEKPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVNEN--NG 74 (367)
T ss_dssp CCGGGSS------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSCSS--SS
T ss_pred CchhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhccc--CC
Confidence 4466664 999999999999999999999999998875 237999999999999999999999877653 45
Q ss_pred ccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCCh
Q 010111 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (518)
Q Consensus 102 ~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~ 181 (518)
.++||++|+++|+.|+.+.+.++....++.+...+|+.........+ .+++|+|+||+
T Consensus 75 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------------------~~~~iiv~T~~ 132 (367)
T 1hv8_A 75 IEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL----------------------KNANIVVGTPG 132 (367)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH----------------------HTCSEEEECHH
T ss_pred CcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhc----------------------CCCCEEEecHH
Confidence 68999999999999999999999888888999999988766554321 25799999999
Q ss_pred HHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCC
Q 010111 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261 (518)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (518)
++.+.+.. ....+.++++||+||||++.+.++...+..++....
T Consensus 133 ~l~~~~~~-~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~----------------------------------- 176 (367)
T 1hv8_A 133 RILDHINR-GTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN----------------------------------- 176 (367)
T ss_dssp HHHHHHHT-TCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSC-----------------------------------
T ss_pred HHHHHHHc-CCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCC-----------------------------------
Confidence 99998887 456688999999999999998888777777765543
Q ss_pred CCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCC
Q 010111 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341 (518)
Q Consensus 262 ~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s 341 (518)
+..+.+++|||++..........+..+....... ...+...........+...+..+++ ..+.++||||++
T Consensus 177 ---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~lvf~~~ 247 (367)
T 1hv8_A 177 ---KDKRILLFSATMPREILNLAKKYMGDYSFIKAKI-----NANIEQSYVEVNENERFEALCRLLK-NKEFYGLVFCKT 247 (367)
T ss_dssp ---SSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS-----SSSSEEEEEECCGGGHHHHHHHHHC-STTCCEEEECSS
T ss_pred ---CCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC-----CCCceEEEEEeChHHHHHHHHHHHh-cCCCcEEEEECC
Confidence 1237899999998776666666666555443322 2345555566667778888877776 456799999999
Q ss_pred hhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhh
Q 010111 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 421 (518)
Q Consensus 342 ~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Q 421 (518)
++.++.+++.|+..+ +.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.|+..|+|
T Consensus 248 ~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q 324 (367)
T 1hv8_A 248 KRDTKELASMLRDIG---FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMH 324 (367)
T ss_dssp HHHHHHHHHHHHHTT---CCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHH
T ss_pred HHHHHHHHHHHHhcC---CCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhh
Confidence 999999999999875 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCcEEEEeecchhHHHHHHHHHHHh
Q 010111 422 RAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQK 456 (518)
Q Consensus 422 r~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~ 456 (518)
|+||+||.|+.|.+++++++.|...++.+.+.++.
T Consensus 325 ~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 359 (367)
T 1hv8_A 325 RIGRTGRAGKKGKAISIINRREYKKLRYIERAMKL 359 (367)
T ss_dssp HSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTC
T ss_pred cccccccCCCccEEEEEEcHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999777777666543
No 12
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=3.8e-55 Score=448.20 Aligned_cols=353 Identities=24% Similarity=0.375 Sum_probs=162.8
Q ss_pred CCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHH
Q 010111 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (518)
Q Consensus 34 ~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~L 113 (518)
+|++.+.++|..+||..|+|+|.+|++.++.. .+++++++||||||||++|++|+++.+... ..++++||++||++|
T Consensus 98 ~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~--~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-~~~~~~lil~Pt~~L 174 (479)
T 3fmp_B 98 RLKPQLLQGVYAMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-NKYPQCLCLSPTYEL 174 (479)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSB--SCCEEEEECCSSSSHHHHHHHHHHTTCCTT-SCSCCEEEECSSHHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCCcEEEEcCCCCchhHHHHHHHHHHHhhc-CCCCcEEEEeChHHH
Confidence 39999999999999999999999999988751 248999999999999999999999887664 345589999999999
Q ss_pred HHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCC
Q 010111 114 ALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (518)
Q Consensus 114 a~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~ 192 (518)
+.|+++.++++.... ++.+....++...... ....++|+|+||++|.+++.+.+.
T Consensus 175 a~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~Ivv~Tp~~l~~~l~~~~~ 230 (479)
T 3fmp_B 175 ALQTGKVIEQMGKFYPELKLAYAVRGNKLERG------------------------QKISEQIVIGTPGTVLDWCSKLKF 230 (479)
T ss_dssp HHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT------------------------CCCCCSEEEECHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHhhCCCceEEEEeCCcccccc------------------------ccCCCCEEEECchHHHHHHHhcCC
Confidence 999999999987654 5677777776543211 124579999999999999987666
Q ss_pred CCCCcccEEEEechhHhhh-HhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEE
Q 010111 193 FTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (518)
Q Consensus 193 ~~~~~~~~vViDEah~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (518)
+.+.++++||+||||++++ .++...+..+...++ ...+.++
T Consensus 231 ~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~--------------------------------------~~~~~i~ 272 (479)
T 3fmp_B 231 IDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP--------------------------------------RNCQMLL 272 (479)
T ss_dssp CCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSC--------------------------------------TTSEEEE
T ss_pred cCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCC--------------------------------------ccceEEE
Confidence 7889999999999999987 567666666665443 1238899
Q ss_pred EeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecC-CCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHH
Q 010111 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 350 (518)
Q Consensus 272 ~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~ 350 (518)
+|||++.....+....+..+..+......... ..+.+.+..+. ...+...+..++......++||||+++..++.+++
T Consensus 273 ~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~ 351 (479)
T 3fmp_B 273 FSATFEDSVWKFAQKVVPDPNVIKLKREEETL-DTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAA 351 (479)
T ss_dssp EESCCCHHHHHHHHHHSSSEEEEEEC------------------------------------------------------
T ss_pred EeCCCCHHHHHHHHHHcCCCeEEeccccccCc-CCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHH
Confidence 99999988888888888888877666543332 33444444333 45677777777777777899999999999999999
Q ss_pred HHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCC------Cccchhhhhh
Q 010111 351 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA------YIKTYIHRAG 424 (518)
Q Consensus 351 ~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~------s~~~~~Qr~G 424 (518)
.|...+ +.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|. +...|+||+|
T Consensus 352 ~L~~~~---~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~G 428 (479)
T 3fmp_B 352 ELSKEG---HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIG 428 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhCC---ccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhc
Confidence 998765 8999999999999999999999999999999999999999999999999999994 5679999999
Q ss_pred hcccCCCCCcEEEEeecch-hHHHHHHHHHHH
Q 010111 425 RTARAGQLGRCFTLLHKDE-VCLVKRFKKLLQ 455 (518)
Q Consensus 425 R~gR~g~~g~~~~~~~~~e-~~~~~~~~~~l~ 455 (518)
|+||.|+.|.+++|+++.+ ...++.+.+.+.
T Consensus 429 RagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~ 460 (479)
T 3fmp_B 429 RTGRFGKRGLAVNMVDSKHSMNILNRIQEHFN 460 (479)
T ss_dssp --------------------------------
T ss_pred ccccCCCCceEEEEEcCcchHHHHHHHHHHhC
Confidence 9999999999999998665 555565655543
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.1e-54 Score=434.50 Aligned_cols=360 Identities=26% Similarity=0.452 Sum_probs=172.4
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccC
Q 010111 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (518)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~ 100 (518)
...|++++ +++.+.+.+..+||.+|+|+|.++++.++. ++++++.+|||+|||++|++|+++.+... ..
T Consensus 20 ~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-~~ 88 (394)
T 1fuu_A 20 VYKFDDME------LDENLLRGVFGYGFEEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTS-VK 88 (394)
T ss_dssp CCSSGGGC------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTT-CC
T ss_pred cCChhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhcc-CC
Confidence 34566665 999999999999999999999999998875 89999999999999999999999887654 34
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
+.++||++|+++|+.|+.+.+.+++...++++..++|+.........+ .+++|+|+||
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------------------~~~~i~v~T~ 146 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL----------------------RDAQIVVGTP 146 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHH----------------------HHCSEEEECH
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhc----------------------CCCCEEEECH
Confidence 568999999999999999999999988889999999998866554321 2469999999
Q ss_pred hHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCC
Q 010111 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (518)
++|.+.+.+ ..+.+.++++||+||||++.+.++...+..++..++.
T Consensus 147 ~~l~~~~~~-~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~--------------------------------- 192 (394)
T 1fuu_A 147 GRVFDNIQR-RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP--------------------------------- 192 (394)
T ss_dssp HHHHHHHHT-TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCT---------------------------------
T ss_pred HHHHHHHHh-CCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCC---------------------------------
Confidence 999999887 4566788999999999999988888888777766532
Q ss_pred CCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeec-CCCCcHHHHHHHHHhcCCCcEEEEc
Q 010111 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC-ESKLKPLYLVALLQSLGEEKCIVFT 339 (518)
Q Consensus 261 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~lVf~ 339 (518)
..+.+++|||++..........+..|..+......... ..+..+.... ....+...+..+++....+++||||
T Consensus 193 -----~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~ 266 (394)
T 1fuu_A 193 -----TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTL-EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFC 266 (394)
T ss_dssp -----TCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC------------------------------------------
T ss_pred -----CceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccC-CCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEE
Confidence 23789999999887777777777777776655433222 2333333333 3334666777777777778999999
Q ss_pred CChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccch
Q 010111 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419 (518)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~ 419 (518)
++++.++.+++.|+..+ +.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.+...|
T Consensus 267 ~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~ 343 (394)
T 1fuu_A 267 NTRRKVEELTTKLRNDK---FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENY 343 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHcC---CeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHH
Confidence 99999999999998765 889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHHh
Q 010111 420 IHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQK 456 (518)
Q Consensus 420 ~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~ 456 (518)
+||+||+||.|+.|.|++|+++.|...++.+.++++.
T Consensus 344 ~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 380 (394)
T 1fuu_A 344 IHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYST 380 (394)
T ss_dssp -------------------------------------
T ss_pred HHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCC
Confidence 9999999999999999999999998777777665543
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.7e-51 Score=402.34 Aligned_cols=335 Identities=29% Similarity=0.446 Sum_probs=274.8
Q ss_pred CCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHH
Q 010111 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (518)
Q Consensus 35 l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La 114 (518)
|++.+.++++++||.+|+|+|.++++.++. ++++++.+|||+|||++|++|+++. +.++||++|+++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~-------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQ----GKNVVVRAKTGSGKTAAYAIPILEL-------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHH-------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhc----CCCEEEEcCCCCcHHHHHHHHHHhh-------cCCEEEEeCCHHHH
Confidence 578999999999999999999999998874 8999999999999999999998863 34799999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCC
Q 010111 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (518)
Q Consensus 115 ~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 194 (518)
.|+.+.+++++...+.++..++|+.........+ ..++|+|+||++|.+.+.. ....
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~i~v~T~~~l~~~~~~-~~~~ 126 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV----------------------RNADIVVATPGRLLDLWSK-GVID 126 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHH----------------------TTCSEEEECHHHHHHHHHT-TSCC
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhc----------------------CCCCEEEECHHHHHHHHHc-CCcc
Confidence 9999999999888889999999988766554321 3479999999999998876 4566
Q ss_pred CCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeE
Q 010111 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (518)
Q Consensus 195 ~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (518)
+.++++||+||||++.+.++...+..++...+. ..+.+++||
T Consensus 127 ~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~SA 168 (337)
T 2z0m_A 127 LSSFEIVIIDEADLMFEMGFIDDIKIILAQTSN--------------------------------------RKITGLFSA 168 (337)
T ss_dssp GGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTT--------------------------------------CSEEEEEES
T ss_pred hhhCcEEEEEChHHhhccccHHHHHHHHhhCCc--------------------------------------ccEEEEEeC
Confidence 888999999999999988888877777765432 126788999
Q ss_pred eecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhh
Q 010111 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 354 (518)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~ 354 (518)
|++..........+..+..+.... ....+........... ......+....++++||||++++.++.+++.|.
T Consensus 169 T~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~- 241 (337)
T 2z0m_A 169 TIPEEIRKVVKDFITNYEEIEACI----GLANVEHKFVHVKDDW--RSKVQALRENKDKGVIVFVRTRNRVAKLVRLFD- 241 (337)
T ss_dssp CCCHHHHHHHHHHSCSCEEEECSG----GGGGEEEEEEECSSSS--HHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT-
T ss_pred cCCHHHHHHHHHhcCCceeeeccc----ccCCceEEEEEeChHH--HHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh-
Confidence 998877776666666655543221 1122333333333332 233456666778899999999999999998875
Q ss_pred cCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCc
Q 010111 355 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434 (518)
Q Consensus 355 ~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~ 434 (518)
.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|.|+..|+||+||+||.|+.|.
T Consensus 242 ------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~ 315 (337)
T 2z0m_A 242 ------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGE 315 (337)
T ss_dssp ------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEE
T ss_pred ------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCce
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecchhHHHHHHHHHHH
Q 010111 435 CFTLLHKDEVCLVKRFKKLLQ 455 (518)
Q Consensus 435 ~~~~~~~~e~~~~~~~~~~l~ 455 (518)
+++|+. .|...++.+.+.++
T Consensus 316 ~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 316 AITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp EEEEES-SCHHHHHHHC----
T ss_pred EEEEEe-CcHHHHHHHHHHhc
Confidence 999999 77766666665543
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.7e-52 Score=424.38 Aligned_cols=352 Identities=22% Similarity=0.323 Sum_probs=246.9
Q ss_pred CCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHH
Q 010111 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (518)
Q Consensus 34 ~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~L 113 (518)
++++.+.+.+.+.||..|+++|.+|++.++.. .++++++.||||||||++|++|++..+... ..+.++||++|+++|
T Consensus 125 ~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~-~~~~~vLvl~P~~~L 201 (508)
T 3fho_A 125 XXXXXXXXXXXXXXXXXXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDAS-VPKPQAICLAPSREL 201 (508)
T ss_dssp --------------CEECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTT-CCSCCEEEECSCHHH
T ss_pred ccccccccccccccccCcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhC-CCCceEEEEECcHHH
Confidence 57889999999999999999999999988862 249999999999999999999999988664 345689999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCC
Q 010111 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (518)
Q Consensus 114 a~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~ 193 (518)
+.|+.+.+++++...++.+....++..... ...+++|+|+||+++.+.+.. ..+
T Consensus 202 ~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~Ivv~T~~~l~~~l~~-~~~ 255 (508)
T 3fho_A 202 ARQIMDVVTEMGKYTEVKTAFGIKDSVPKG-------------------------AKIDAQIVIGTPGTVMDLMKR-RQL 255 (508)
T ss_dssp HHHHHHHHHHHSTTSSCCEEC-----------------------------------CCCCSEEEECHHHHHHHHHT-TCS
T ss_pred HHHHHHHHHHhCCccCeeEEEEeCCccccc-------------------------ccCCCCEEEECHHHHHHHHHc-CCc
Confidence 999999999998777776666655543221 123679999999999998877 456
Q ss_pred CCCcccEEEEechhHhhh-HhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEE
Q 010111 194 TLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (518)
Q Consensus 194 ~~~~~~~vViDEah~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (518)
.+.++++||+||||++.+ .++...+..+...++. ..+.+++
T Consensus 256 ~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~--------------------------------------~~~~i~l 297 (508)
T 3fho_A 256 DARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPR--------------------------------------NTQIVLF 297 (508)
T ss_dssp CCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCT--------------------------------------TCEEEEE
T ss_pred cccCCCEEEEechhhhcccCCcHHHHHHHHHhCCc--------------------------------------CCeEEEE
Confidence 788999999999999987 5677767766665532 2378999
Q ss_pred eEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHH
Q 010111 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (518)
Q Consensus 273 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L 352 (518)
|||++.....+.......+..+...............+........+...+..++.....+++||||+++..++.+++.|
T Consensus 298 SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L 377 (508)
T 3fho_A 298 SATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRM 377 (508)
T ss_dssp ESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHH
T ss_pred eCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHH
Confidence 99998878888877777777665554433332222233333344566777777887777899999999999999999999
Q ss_pred hhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCC------CCccchhhhhhhc
Q 010111 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------AYIKTYIHRAGRT 426 (518)
Q Consensus 353 ~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p------~s~~~~~Qr~GR~ 426 (518)
...+ +.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.| .+...|+||+||+
T Consensus 378 ~~~~---~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRa 454 (508)
T 3fho_A 378 TADG---HTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRT 454 (508)
T ss_dssp TTTT---CCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCC
T ss_pred HhCC---CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhc
Confidence 8755 889999999999999999999999999999999999999999999999999999 7899999999999
Q ss_pred ccCCCCCcEEEEeec-chhHHHHHHHHHHH
Q 010111 427 ARAGQLGRCFTLLHK-DEVCLVKRFKKLLQ 455 (518)
Q Consensus 427 gR~g~~g~~~~~~~~-~e~~~~~~~~~~l~ 455 (518)
||.|+.|.+++|+.+ ++...++.++++++
T Consensus 455 gR~g~~g~~i~l~~~~~~~~~~~~i~~~~~ 484 (508)
T 3fho_A 455 GRFGRVGVSINFVHDKKSWEEMNAIQEYFQ 484 (508)
T ss_dssp C-----CEEEEEECTTTSSSSHHHHHHHSC
T ss_pred CCCCCCcEEEEEEeChHHHHHHHHHHHHHC
Confidence 999999999999984 55555566665543
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=9.8e-50 Score=408.83 Aligned_cols=386 Identities=22% Similarity=0.298 Sum_probs=285.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHh-CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCC
Q 010111 23 LFEDCPLDHLPCLDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (518)
Q Consensus 23 ~~~~~~~~~~~~l~~~~~~~l~~-~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~ 101 (518)
+|++++ +++.+.+.|++ +||..|+|+|.++++.++. |+|+++.+|||+|||++|++|++.. .
T Consensus 3 ~fe~l~------L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~l~~-------~ 65 (523)
T 1oyw_A 3 QAEVLN------LESGAKQVLQETFGYQQFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPALLL-------N 65 (523)
T ss_dssp CCCCSS------HHHHHHHHHHHTTCCSSCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHS-------S
T ss_pred ChhhCC------CCHHHHHHHHHHhCCCCCCHHHHHHHHHHHc----CCCEEEECCCCcHHHHHHHHHHHHh-------C
Confidence 455554 88999999998 8999999999999998874 8999999999999999999999842 2
Q ss_pred ccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCCh
Q 010111 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (518)
Q Consensus 102 ~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~ 181 (518)
..+||++|+++|+.|+.+.+..+ ++.+..+.|+.+......... ......++|+|+||+
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~-----------------~~~~~~~~ilv~Tpe 124 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMT-----------------GCRTGQIRLLYIAPE 124 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHH-----------------HHHHTCCSEEEECHH
T ss_pred CCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHH-----------------HHhcCCCCEEEECHH
Confidence 37999999999999999999886 778888888877554432111 122346899999999
Q ss_pred HHHHhHhcCCCCCCCcccEEEEechhHhhhHh--HHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCC
Q 010111 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (518)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (518)
+|...... ..+...++++||+||||++.+++ |......+......
T Consensus 125 ~l~~~~~~-~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~-------------------------------- 171 (523)
T 1oyw_A 125 RLMLDNFL-EHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR-------------------------------- 171 (523)
T ss_dssp HHTSTTHH-HHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHH--------------------------------
T ss_pred HHhChHHH-HHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHh--------------------------------
Confidence 98532111 11234678999999999997765 33222222111100
Q ss_pred CCCCCCceeeEEEeEeecCChhh-hh-hccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEE
Q 010111 260 KDKPYPRLVKMVLSATLTQDPNK-LA-QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 337 (518)
Q Consensus 260 ~~~~~~~~~~i~~SaT~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lV 337 (518)
.+..+.+++|||++..... +. ...+..+......... + . ..+.......+...+..++....+.++||
T Consensus 172 ----~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r---~-~--l~~~v~~~~~~~~~l~~~l~~~~~~~~IV 241 (523)
T 1oyw_A 172 ----FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDR---P-N--IRYMLMEKFKPLDQLMRYVQEQRGKSGII 241 (523)
T ss_dssp ----CTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCC---T-T--EEEEEEECSSHHHHHHHHHHHTTTCCEEE
T ss_pred ----CCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCC---C-c--eEEEEEeCCCHHHHHHHHHHhcCCCcEEE
Confidence 0234789999999866433 22 2334455544332221 1 1 12233344567778888888777889999
Q ss_pred EcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCcc
Q 010111 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417 (518)
Q Consensus 338 f~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~ 417 (518)
||+|++.++.+++.|...+ +.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||+++.|.|..
T Consensus 242 f~~sr~~~e~l~~~L~~~g---~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~ 318 (523)
T 1oyw_A 242 YCNSRAKVEDTAARLQSKG---ISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIE 318 (523)
T ss_dssp ECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHH
T ss_pred EeCCHHHHHHHHHHHHHCC---CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHH
Confidence 9999999999999999876 8999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHHhhcCCCCCccCCCchhhhhhHHHHHHHHHHHHHHHHhHhccc
Q 010111 418 TYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRK 497 (518)
Q Consensus 418 ~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (518)
.|+||+||+||.|.+|.+++|+++.|.. .+..++.. . .+... ... ....+...++--....
T Consensus 319 ~y~Qr~GRaGR~g~~~~~~l~~~~~d~~---~~~~~~~~-~--------~~~~~----~~~---~~~~l~~m~~~~~~~~ 379 (523)
T 1oyw_A 319 SYYQETGRAGRDGLPAEAMLFYDPADMA---WLRRCLEE-K--------PQGQL----QDI---ERHKLNAMGAFAEAQT 379 (523)
T ss_dssp HHHHHHTTSCTTSSCEEEEEEECHHHHH---HHHHHHHT-S--------CCSHH----HHH---HHHHHHHHHHHHTCSS
T ss_pred HHHHHhccccCCCCCceEEEEeCHHHHH---HHHHHHhc-c--------CcHHH----HHH---HHHHHHHHHHHHhccc
Confidence 9999999999999999999999999884 34444443 0 11111 111 1223333333333456
Q ss_pred cccccccccccCcc
Q 010111 498 HTIGFKLSRMGKGR 511 (518)
Q Consensus 498 ~~~~~~~~~~~~~~ 511 (518)
.+..+.+.|+|...
T Consensus 380 crr~~l~~~f~e~~ 393 (523)
T 1oyw_A 380 CRRLVLLNYFGEGR 393 (523)
T ss_dssp CHHHHHHHHTTCCC
T ss_pred cHhhhhHhhcCCCC
Confidence 77778888888653
No 17
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.5e-49 Score=411.28 Aligned_cols=336 Identities=19% Similarity=0.273 Sum_probs=258.5
Q ss_pred CCCHHHHHHHHh-CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHH
Q 010111 34 CLDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (518)
Q Consensus 34 ~l~~~~~~~l~~-~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~ 112 (518)
++++.+.+.|++ +||..|+|+|.++++.++. |+|+++.+|||+|||++|++|++.. ..++||++|+++
T Consensus 27 ~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~----g~d~lv~~pTGsGKTl~~~lpal~~-------~g~~lVisP~~~ 95 (591)
T 2v1x_A 27 PWSGKVKDILQNVFKLEKFRPLQLETINVTMA----GKEVFLVMPTGGGKSLCYQLPALCS-------DGFTLVICPLIS 95 (591)
T ss_dssp TTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHT----TCCEEEECCTTSCTTHHHHHHHHTS-------SSEEEEECSCHH
T ss_pred CCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHc----CCCEEEEECCCChHHHHHHHHHHHc-------CCcEEEEeCHHH
Confidence 388999999998 7999999999999998875 8999999999999999999999842 347999999999
Q ss_pred HHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHH------Hh
Q 010111 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM------DH 186 (518)
Q Consensus 113 La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~------~~ 186 (518)
|+.|+.+.+..+ ++++..+.|+.+.......+.. .......++|+|+||++|. +.
T Consensus 96 L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~---------------l~~~~~~~~Ilv~Tpe~L~~~~~~~~~ 156 (591)
T 2v1x_A 96 LMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAE---------------MVNKNSELKLIYVTPEKIAKSKMFMSR 156 (591)
T ss_dssp HHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHH---------------HHCTTCCCCEEEECHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHH---------------hhcccCCCCEEEEChhHhhccHHHHHH
Confidence 999999999987 7888999998876554322110 0012456899999999874 22
Q ss_pred HhcCCCCCCCcccEEEEechhHhhhHh--HHhHHHH---HHHhcccccccccCCcccccccccccchhhhccccccCCCC
Q 010111 187 INATRGFTLEHLCYLVVDETDRLLREA--YQAWLPT---VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261 (518)
Q Consensus 187 l~~~~~~~~~~~~~vViDEah~~~~~~--~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (518)
+.+ ...+.++++|||||||++.+++ |...+.. +...
T Consensus 157 l~~--~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~------------------------------------- 197 (591)
T 2v1x_A 157 LEK--AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQ------------------------------------- 197 (591)
T ss_dssp HHH--HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHH-------------------------------------
T ss_pred HHh--hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHh-------------------------------------
Confidence 332 2346679999999999997765 3332221 1111
Q ss_pred CCCCceeeEEEeEeecCChhhhhhccCC--CCeEEeeCCccccCccccceeeeecCCC---CcHHHHHHHHHh-cCCCcE
Q 010111 262 KPYPRLVKMVLSATLTQDPNKLAQLDLH--HPLFLTTGETRYKLPERLESYKLICESK---LKPLYLVALLQS-LGEEKC 335 (518)
Q Consensus 262 ~~~~~~~~i~~SaT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~~l~~-~~~~~~ 335 (518)
.+..+.+++|||++..........+. .+..+..... .+ .+ .+.+..... .+...+..++.. ..+.++
T Consensus 198 --~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~---r~-nl-~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~ 270 (591)
T 2v1x_A 198 --FPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFN---RP-NL-YYEVRQKPSNTEDFIEDIVKLINGRYKGQSG 270 (591)
T ss_dssp --CTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCC---CT-TE-EEEEEECCSSHHHHHHHHHHHHTTTTTTCEE
T ss_pred --CCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCC---Cc-cc-EEEEEeCCCcHHHHHHHHHHHHHHhccCCCe
Confidence 12347899999998765554443333 3333332211 11 11 122222222 233455555553 356899
Q ss_pred EEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCC
Q 010111 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 415 (518)
Q Consensus 336 lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s 415 (518)
||||+|++.++.+++.|...+ +.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||+|++|.|
T Consensus 271 IVf~~sr~~~e~la~~L~~~g---~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s 347 (591)
T 2v1x_A 271 IIYCFSQKDSEQVTVSLQNLG---IHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKS 347 (591)
T ss_dssp EEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSS
T ss_pred EEEeCcHHHHHHHHHHHHHCC---CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCC
Confidence 999999999999999999876 89999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhcccCCCCCcEEEEeecchhHHHH
Q 010111 416 IKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVK 448 (518)
Q Consensus 416 ~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~ 448 (518)
...|+||+||+||.|++|.|++|+++.|...++
T Consensus 348 ~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~ 380 (591)
T 2v1x_A 348 MENYYQESGRAGRDDMKADCILYYGFGDIFRIS 380 (591)
T ss_dssp HHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHH
T ss_pred HHHHHHHhccCCcCCCCceEEEEEChHHHHHHH
Confidence 999999999999999999999999988875443
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2.9e-49 Score=397.26 Aligned_cols=375 Identities=17% Similarity=0.227 Sum_probs=268.2
Q ss_pred HHHHHHHHh-CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHH
Q 010111 37 PRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (518)
Q Consensus 37 ~~~~~~l~~-~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~ 115 (518)
+++.+.+++ +|| +|+|+|.++++.++. |+|++++||||||||++|++|++..+. .+.++||++||++|+.
T Consensus 8 ~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~l~~~~~~~~----~~~~~lil~Pt~~L~~ 78 (414)
T 3oiy_A 8 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVK 78 (414)
T ss_dssp HHHHHHHHHHHSS-CCCHHHHHHHHHHTT----TCCEECCSCSSSSHHHHHHHHHHHHHT----TTCCEEEEESSHHHHH
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHhc----CCCEEEEEECCHHHHH
Confidence 355666666 577 899999999998874 899999999999999999999887653 3458999999999999
Q ss_pred HHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcC-CCcEEEeCChHHHHhHhcCCCCC
Q 010111 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFT 194 (518)
Q Consensus 116 Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~~ 194 (518)
|+++.++.++. .++++..++|+.+...+...+ ..+.. .++|+|+||++|.+.+.. +.
T Consensus 79 q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~------------------~~l~~~~~~Iiv~Tp~~l~~~l~~---~~ 136 (414)
T 3oiy_A 79 QTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFE------------------KSFEEDDYHILVFSTQFVSKNREK---LS 136 (414)
T ss_dssp HHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHH------------------HHHHHTCCSEEEEEHHHHHHCHHH---HT
T ss_pred HHHHHHHHHcc-CCceEEEEECCCChhhHHHHH------------------HHhhcCCCCEEEECHHHHHHHHHH---hc
Confidence 99999999988 789999999999874432211 12333 489999999999888765 55
Q ss_pred CCcccEEEEechhHhhh-----------HhHHhH-HHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCC
Q 010111 195 LEHLCYLVVDETDRLLR-----------EAYQAW-LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262 (518)
Q Consensus 195 ~~~~~~vViDEah~~~~-----------~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (518)
+.++++||+||||++.+ .+|... +..++..++..... ..+ .
T Consensus 137 ~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~-------------------------~~l--~ 189 (414)
T 3oiy_A 137 QKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIY-------------------------ERP--K 189 (414)
T ss_dssp TCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCC-------------------------CCC--T
T ss_pred cccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhh-------------------------hhc--c
Confidence 67899999999997764 444444 55666555311000 000 0
Q ss_pred CCCceeeEEEeEe-ecCChhh-hhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcC
Q 010111 263 PYPRLVKMVLSAT-LTQDPNK-LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 340 (518)
Q Consensus 263 ~~~~~~~i~~SaT-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~ 340 (518)
..+..+.+++||| .+..... +....+. +.... .......+.+.+... .+...+..+++.. ++++||||+
T Consensus 190 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~i~~~~~~~---~~~~~l~~~l~~~-~~~~lVF~~ 260 (414)
T 3oiy_A 190 NLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGR-LVSVARNITHVRISS---RSKEKLVELLEIF-RDGILIFAQ 260 (414)
T ss_dssp TCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSC-CCCCCCSEEEEEESS---CCHHHHHHHHHHH-CSSEEEEES
T ss_pred cCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCc-cccccccchheeecc---CHHHHHHHHHHHc-CCCEEEEEC
Confidence 0133488999999 4444332 2221111 11111 112223344444333 5677778887774 589999999
Q ss_pred ChhhHHHHHHHHhhcCCCceeEE-EccccCChHHHHHHHHHHhcCCceEEEE----cCccccCCCCCC-CCEEEEcCCC-
Q 010111 341 SVESTHRLCTLLNHFGELRIKIK-EYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEG-VNNVVNYDKP- 413 (518)
Q Consensus 341 s~~~~~~l~~~L~~~~~~~~~v~-~~hg~~~~~~r~~~~~~f~~g~~~vLva----T~~~~~GiDip~-v~~VI~~~~p- 413 (518)
++..++.+++.|...+ +.+. .+||+ +|. ++.|++|+++|||| |+++++|+|+|+ +++||+||+|
T Consensus 261 ~~~~~~~l~~~L~~~~---~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~ 331 (414)
T 3oiy_A 261 TEEEGKELYEYLKRFK---FNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 331 (414)
T ss_dssp SHHHHHHHHHHHHHTT---CCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCT
T ss_pred CHHHHHHHHHHHHHcC---CceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCC
Confidence 9999999999999876 7887 89985 444 99999999999999 999999999999 9999999999
Q ss_pred -CCccchhhhhhhcccCC----CCCcEEEEeecchhHHHHHHHHHHHhhcCCCCCccCCCchhhhhhHHHHHHHHHHHHH
Q 010111 414 -AYIKTYIHRAGRTARAG----QLGRCFTLLHKDEVCLVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKE 488 (518)
Q Consensus 414 -~s~~~~~Qr~GR~gR~g----~~g~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (518)
.+...|+||+||+||.| +.|.+++|+ .|...++.+++.++.. ...+...++....+..........+.+++
T Consensus 332 ~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 407 (414)
T 3oiy_A 332 GPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLI--AEEEIIEEAEANWKELVHEVEESRRRSER 407 (414)
T ss_dssp TTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHH--HCCCEEEGGGCCHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhccc--ccccccccccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999987 578999998 6666677888877722 12233344444444444444444444444
Q ss_pred HHH
Q 010111 489 TVE 491 (518)
Q Consensus 489 ~~~ 491 (518)
.+.
T Consensus 408 ~l~ 410 (414)
T 3oiy_A 408 ELT 410 (414)
T ss_dssp ---
T ss_pred hhh
Confidence 433
No 19
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=3e-45 Score=378.52 Aligned_cols=372 Identities=18% Similarity=0.183 Sum_probs=263.6
Q ss_pred hCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 45 ~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
.+|| .|||+|..+++.++. |+ ++.|+||+|||++|++|++.+... +..++|++||++||.|+++++..+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~----G~--Iaea~TGeGKTlaf~LP~~l~aL~----g~~vlVltptreLA~qd~e~~~~l 147 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHD----GN--IAEMKTGEGKTLTSTLPVYLNALT----GKGVHVVTVNEYLASRDAEQMGKI 147 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHT----TS--EEECCTTSCHHHHHHHHHHHHHTT----SSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhC----CC--EEEccCCcHHHHHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 5899 999999999998874 76 999999999999999999854333 347999999999999999999999
Q ss_pred ccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHhHhcC-----CCCCCCcc
Q 010111 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHL 198 (518)
Q Consensus 125 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~-----~~~~~~~~ 198 (518)
+..+|+++++++|+.+...+. ...++||+|+||++| ++++... ..+.++.+
T Consensus 148 ~~~lgl~v~~i~gg~~~~~r~-----------------------~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~ 204 (844)
T 1tf5_A 148 FEFLGLTVGLNLNSMSKDEKR-----------------------EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPL 204 (844)
T ss_dssp HHHTTCCEEECCTTSCHHHHH-----------------------HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCC
T ss_pred HhhcCCeEEEEeCCCCHHHHH-----------------------HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCC
Confidence 999999999999998765432 224589999999999 6665442 23557889
Q ss_pred cEEEEechhHhh-hHh---------------HHhHHHHHHHhccc---------ccccccCCc----------ccccccc
Q 010111 199 CYLVVDETDRLL-REA---------------YQAWLPTVLQLTRS---------DNENRFSDA----------STFLPSA 243 (518)
Q Consensus 199 ~~vViDEah~~~-~~~---------------~~~~~~~i~~~~~~---------~~~~~~~~~----------~~~~~~~ 243 (518)
.++|+||||+|+ +.+ |...+..|+..++. .....+... ...+.+.
T Consensus 205 ~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsa 284 (844)
T 1tf5_A 205 HFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDV 284 (844)
T ss_dssp CEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSG
T ss_pred CEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCC
Confidence 999999999998 663 66778888877753 111100000 0001110
Q ss_pred c-----ccch----hhh-----------------------ccccccCCCC-----------CCC-C--------------
Q 010111 244 F-----GSLK----TIR-----------------------RCGVERGFKD-----------KPY-P-------------- 265 (518)
Q Consensus 244 ~-----~~~~----~~~-----------------------~~~~~~~~~~-----------~~~-~-------------- 265 (518)
. ..+. ... +....+.+.+ ... +
T Consensus 285 t~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~f 364 (844)
T 1tf5_A 285 KHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYF 364 (844)
T ss_dssp GGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHH
Confidence 0 0000 000 0000000000 000 0
Q ss_pred --ceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHh--cCCCcEEEEcCC
Q 010111 266 --RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSS 341 (518)
Q Consensus 266 --~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s 341 (518)
-.+...+|+|......++...+....+.+ +... +....-....+......|...+...+.. ..+.++||||+|
T Consensus 365 r~y~kl~GmTGTa~te~~e~~~iY~l~vv~I--Ptn~-p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s 441 (844)
T 1tf5_A 365 RMYEKLAGMTGTAKTEEEEFRNIYNMQVVTI--PTNR-PVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVA 441 (844)
T ss_dssp TTSSEEEEEESCCGGGHHHHHHHHCCCEEEC--CCSS-CCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred HHHhhhccCCcccchhHHHHHHHhCCceEEe--cCCC-CcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 01346788888766666655554433222 2111 1111111223445566788888877764 246789999999
Q ss_pred hhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCC--------CCCEEEEcCCC
Q 010111 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE--------GVNNVVNYDKP 413 (518)
Q Consensus 342 ~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip--------~v~~VI~~~~p 413 (518)
++.++.+++.|...+ +++..+||++++.+|..+.++|+.| .|+||||+++||+||+ ++.+||+|+.|
T Consensus 442 ~~~se~Ls~~L~~~g---i~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p 516 (844)
T 1tf5_A 442 VETSELISKLLKNKG---IPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERH 516 (844)
T ss_dssp HHHHHHHHHHHHTTT---CCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCC
T ss_pred HHHHHHHHHHHHHCC---CCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCC
Confidence 999999999999876 8999999999988887777666666 7999999999999999 78899999999
Q ss_pred CCccchhhhhhhcccCCCCCcEEEEeecchhHH----HHHHHHHHHhhc
Q 010111 414 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCL----VKRFKKLLQKAD 458 (518)
Q Consensus 414 ~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~----~~~~~~~l~~~~ 458 (518)
.|...|+||+|||||+|.+|.+++|++.+|... .+++...+....
T Consensus 517 ~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~l~r~f~~~~~~~~~~~~~ 565 (844)
T 1tf5_A 517 ESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFGAERTMAMLDRFG 565 (844)
T ss_dssp SSHHHHHHHHTTSSGGGCCEEEEEEEETTSSGGGSSHHHHHHHHHHHHT
T ss_pred CCHHHHHhhcCccccCCCCCeEEEEecHHHHHHHHHhHHHHHHHHHhcC
Confidence 999999999999999999999999999877422 344666666544
No 20
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.3e-45 Score=385.55 Aligned_cols=338 Identities=20% Similarity=0.219 Sum_probs=199.0
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhccc-CCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~-~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
++..+|+|+|.++++.++. ++++++++|||+|||++|++|+++.+..... .+.++||++||++|+.|+.+.++++
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 78 (556)
T 4a2p_A 3 METKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 78 (556)
T ss_dssp -----CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 3456899999999998874 8999999999999999999999998876532 2568999999999999999999999
Q ss_pred ccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEe
Q 010111 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204 (518)
Q Consensus 125 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViD 204 (518)
+...++++..++|+.+...... .+..+++|+|+||++|.+.+.......+.++++||+|
T Consensus 79 ~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViD 137 (556)
T 4a2p_A 79 FERQGYSVQGISGENFSNVSVE---------------------KVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFD 137 (556)
T ss_dssp HGGGTCCEEECCCC-----CHH---------------------HHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEE
T ss_pred hcccCceEEEEeCCCCcchhHH---------------------HhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEE
Confidence 9888999999999886544322 2234579999999999999987432378899999999
Q ss_pred chhHhhhHhHHhHH-HHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChh-h
Q 010111 205 ETDRLLREAYQAWL-PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN-K 282 (518)
Q Consensus 205 Eah~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~-~ 282 (518)
|||++.+.+....+ ..++...... ..+..+.+++|||+..... .
T Consensus 138 Eah~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~l~lSAT~~~~~~~~ 183 (556)
T 4a2p_A 138 ECHNTTGNHPYNVLMTRYLEQKFNS----------------------------------ASQLPQILGLTASVGVGNAKN 183 (556)
T ss_dssp TGGGCSTTSHHHHHHHHHHHHHHCC-------------------------------------CCEEEEEESCCCCTTCSS
T ss_pred CCcccCCcchHHHHHHHHHHhhhcc----------------------------------cCCCCeEEEEeCCcccCchhh
Confidence 99999876543332 1222111000 0123478999999853210 0
Q ss_pred ----------hhh------------------ccCCCCeEEeeCCccccCcccc-----------ce--------------
Q 010111 283 ----------LAQ------------------LDLHHPLFLTTGETRYKLPERL-----------ES-------------- 309 (518)
Q Consensus 283 ----------~~~------------------~~~~~~~~~~~~~~~~~~~~~~-----------~~-------------- 309 (518)
+.. .+...|......... ..+... ..
T Consensus 184 ~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (556)
T 4a2p_A 184 IEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR-RIHNPFAAIISNLMSETEALMRTIYSVDTLSQN 262 (556)
T ss_dssp HHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCC-CSCCHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCC-CcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 000 011111111100000 000000 00
Q ss_pred ------------e-------------------------------------------------------------------
Q 010111 310 ------------Y------------------------------------------------------------------- 310 (518)
Q Consensus 310 ------------~------------------------------------------------------------------- 310 (518)
+
T Consensus 263 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 342 (556)
T 4a2p_A 263 SKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPY 342 (556)
T ss_dssp --CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred cccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCC
Confidence 0
Q ss_pred ----------------------eeecCCCCcHHHHHHHHHh----cCCCcEEEEcCChhhHHHHHHHHhhcC--------
Q 010111 311 ----------------------KLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFG-------- 356 (518)
Q Consensus 311 ----------------------~~~~~~~~k~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~L~~~~-------- 356 (518)
........|...|..++.. ..+.++||||+++.+++.+++.|....
T Consensus 343 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~ 422 (556)
T 4a2p_A 343 TELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPG 422 (556)
T ss_dssp CHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEE
T ss_pred CHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeee
Confidence 0000124456666666653 457899999999999999999997641
Q ss_pred -CCceeEEEccccCChHHHHHHHHHHhc-CCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCc
Q 010111 357 -ELRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434 (518)
Q Consensus 357 -~~~~~v~~~hg~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~ 434 (518)
..+.....+||+|++.+|.+++++|++ |+++|||||+++++|||+|++++||+||+|+|+..|+||+|| ||. +.|.
T Consensus 423 ~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~ 500 (556)
T 4a2p_A 423 VLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSK 500 (556)
T ss_dssp C------------------------------CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CC
T ss_pred EEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCce
Confidence 013455667889999999999999999 999999999999999999999999999999999999999999 999 7999
Q ss_pred EEEEeecchhH
Q 010111 435 CFTLLHKDEVC 445 (518)
Q Consensus 435 ~~~~~~~~e~~ 445 (518)
+++|+++.+..
T Consensus 501 ~~~l~~~~~~~ 511 (556)
T 4a2p_A 501 CILVTSKTEVV 511 (556)
T ss_dssp EEEEESCHHHH
T ss_pred EEEEEeCcchH
Confidence 99999987764
No 21
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.2e-45 Score=392.13 Aligned_cols=344 Identities=22% Similarity=0.283 Sum_probs=255.4
Q ss_pred CcccCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhc
Q 010111 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (518)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~ 97 (518)
+....+|++++ |++.+.+.++++||.+|+|+|.++++.++ ..+++++++||||||||+++.+++++.+...
T Consensus 4 ~~~~~~~~~l~------l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~---~~~~~~lv~apTGsGKT~~~~l~il~~~~~~ 74 (715)
T 2va8_A 4 ELEWMPIEDLK------LPSNVIEIIKKRGIKKLNPPQTEAVKKGL---LEGNRLLLTSPTGSGKTLIAEMGIISFLLKN 74 (715)
T ss_dssp --CCCBGGGSS------SCHHHHHHHHTTSCCBCCHHHHHHHHTTT---TTTCCEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred ccccCcHHHcC------CCHHHHHHHHhCCCCCCCHHHHHHHHHHh---cCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC
Confidence 34445566665 99999999999999999999999987633 3589999999999999999999999887643
Q ss_pred ccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEE
Q 010111 98 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (518)
Q Consensus 98 ~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv 177 (518)
+.+++|++|+++|+.|+++.++.+.. .+++++..+|+...... . ..+++|+|
T Consensus 75 ---~~~il~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~-----------------------~-~~~~~Iiv 126 (715)
T 2va8_A 75 ---GGKAIYVTPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDA-----------------------W-LKNYDIII 126 (715)
T ss_dssp ---CSEEEEECSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCG-----------------------G-GGGCSEEE
T ss_pred ---CCeEEEEeCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchh-----------------------h-cCCCCEEE
Confidence 35899999999999999999965543 48899999997653221 1 13679999
Q ss_pred eCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhcccccc
Q 010111 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (518)
Q Consensus 178 ~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (518)
+||+++...+.+ ....++++++||+||||.+.+..++..++.++..++
T Consensus 127 ~Tpe~l~~~~~~-~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~------------------------------- 174 (715)
T 2va8_A 127 TTYEKLDSLWRH-RPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK------------------------------- 174 (715)
T ss_dssp ECHHHHHHHHHH-CCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH-------------------------------
T ss_pred EcHHHHHHHHhC-ChhHhhccCEEEEechhhcCCcccchHHHHHHHhcc-------------------------------
Confidence 999999998887 344588999999999999987788888888876653
Q ss_pred CCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCcccc--------ceeeeecC--------CCCcHH
Q 010111 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL--------ESYKLICE--------SKLKPL 321 (518)
Q Consensus 258 ~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~--------~~~k~~ 321 (518)
..+.+++|||+++ ...+.... ..+.+ ........+...+ .......+ ...+..
T Consensus 175 --------~~~ii~lSATl~n-~~~~~~~l-~~~~~-~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (715)
T 2va8_A 175 --------RRNLLALSATISN-YKQIAKWL-GAEPV-ATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIA 243 (715)
T ss_dssp --------TSEEEEEESCCTT-HHHHHHHH-TCEEE-ECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHH
T ss_pred --------cCcEEEEcCCCCC-HHHHHHHh-CCCcc-CCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHH
Confidence 1278999999964 34443322 21111 1110000000000 00000111 122223
Q ss_pred HHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCCC---------------------------------ceeEEEcccc
Q 010111 322 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL---------------------------------RIKIKEYSGL 368 (518)
Q Consensus 322 ~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~---------------------------------~~~v~~~hg~ 368 (518)
.+...+. .++++||||++++.++.+++.|...... ...+..+||+
T Consensus 244 ~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~ 321 (715)
T 2va8_A 244 YTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAG 321 (715)
T ss_dssp HHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTT
T ss_pred HHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCC
Confidence 3333332 4689999999999999999999864211 1258999999
Q ss_pred CChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEE----cC-------CCCCccchhhhhhhcccCC--CCCcE
Q 010111 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----YD-------KPAYIKTYIHRAGRTARAG--QLGRC 435 (518)
Q Consensus 369 ~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~~-------~p~s~~~~~Qr~GR~gR~g--~~g~~ 435 (518)
++..+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.|..+|.||+||+||.| ..|.|
T Consensus 322 l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~ 401 (715)
T 2va8_A 322 LSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGES 401 (715)
T ss_dssp SCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEE
T ss_pred CCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999 98 7999999999999999988 47899
Q ss_pred EEEeecch
Q 010111 436 FTLLHKDE 443 (518)
Q Consensus 436 ~~~~~~~e 443 (518)
+.++++.+
T Consensus 402 ~~l~~~~~ 409 (715)
T 2va8_A 402 IVVVRDKE 409 (715)
T ss_dssp EEECSCGG
T ss_pred EEEeCCch
Confidence 99998766
No 22
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2e-45 Score=393.51 Aligned_cols=333 Identities=21% Similarity=0.283 Sum_probs=256.9
Q ss_pred CCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHH
Q 010111 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (518)
Q Consensus 35 l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La 114 (518)
+++.+.+.++++||.+|+|+|.++++.++ ..+++++++||||||||++|.+|+++.+... +.+++|++|+++|+
T Consensus 8 l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~---~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~~l~i~P~raLa 81 (720)
T 2zj8_A 8 VDERIKSTLKERGIESFYPPQAEALKSGI---LEGKNALISIPTASGKTLIAEIAMVHRILTQ---GGKAVYIVPLKALA 81 (720)
T ss_dssp SCHHHHHHHHHTTCCBCCHHHHHHHTTTG---GGTCEEEEECCGGGCHHHHHHHHHHHHHHHH---CSEEEEECSSGGGH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHh---cCCCcEEEEcCCccHHHHHHHHHHHHHHHhC---CCEEEEEcCcHHHH
Confidence 99999999999999999999999977622 3589999999999999999999999887743 35899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCC
Q 010111 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (518)
Q Consensus 115 ~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 194 (518)
.|+++.++++.. .+++++..+|+...... ....++|+|+||+++...+.+ ....
T Consensus 82 ~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~------------------------~~~~~~Iiv~Tpe~l~~~~~~-~~~~ 135 (720)
T 2zj8_A 82 EEKFQEFQDWEK-IGLRVAMATGDYDSKDE------------------------WLGKYDIIIATAEKFDSLLRH-GSSW 135 (720)
T ss_dssp HHHHHHTGGGGG-GTCCEEEECSCSSCCCG------------------------GGGGCSEEEECHHHHHHHHHH-TCTT
T ss_pred HHHHHHHHHHHh-cCCEEEEecCCCCcccc------------------------ccCCCCEEEECHHHHHHHHHc-Chhh
Confidence 999999976654 48899999997643221 123579999999999988877 3445
Q ss_pred CCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeE
Q 010111 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (518)
Q Consensus 195 ~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (518)
++++++||+||||++.+..++..++.++..+.. ..+.+++||
T Consensus 136 l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~--------------------------------------~~~ii~lSA 177 (720)
T 2zj8_A 136 IKDVKILVADEIHLIGSRDRGATLEVILAHMLG--------------------------------------KAQIIGLSA 177 (720)
T ss_dssp GGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBT--------------------------------------TBEEEEEEC
T ss_pred hhcCCEEEEECCcccCCCcccHHHHHHHHHhhc--------------------------------------CCeEEEEcC
Confidence 789999999999999888888888888877641 128899999
Q ss_pred eecCChhhhhhccCCCCeEEeeCCccccCcccc----ceeeeecC-----CCCcHHHHHHHHHhcCCCcEEEEcCChhhH
Q 010111 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL----ESYKLICE-----SKLKPLYLVALLQSLGEEKCIVFTSSVEST 345 (518)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~ 345 (518)
|+++ ...+.... ..+. +..... ..+... ........ ...+...+...+. .++++||||++++.+
T Consensus 178 Tl~n-~~~~~~~l-~~~~-~~~~~r--p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~ 250 (720)
T 2zj8_A 178 TIGN-PEELAEWL-NAEL-IVSDWR--PVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKA 250 (720)
T ss_dssp CCSC-HHHHHHHT-TEEE-EECCCC--SSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHH
T ss_pred CcCC-HHHHHHHh-CCcc-cCCCCC--CCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHH
Confidence 9964 34444332 2111 111100 110000 00001111 2334444555444 368999999999999
Q ss_pred HHHHHHHhhcCCC------------------------------ceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCcc
Q 010111 346 HRLCTLLNHFGEL------------------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395 (518)
Q Consensus 346 ~~l~~~L~~~~~~------------------------------~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 395 (518)
+.+++.|...... ...+..+||++++.+|..+++.|++|.++|||||+++
T Consensus 251 ~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l 330 (720)
T 2zj8_A 251 ERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTL 330 (720)
T ss_dssp HHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTT
T ss_pred HHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHh
Confidence 9999998753110 1248999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEE----cC----CCCCccchhhhhhhcccCC--CCCcEEEEeecchh
Q 010111 396 TRGMDVEGVNNVVN----YD----KPAYIKTYIHRAGRTARAG--QLGRCFTLLHKDEV 444 (518)
Q Consensus 396 ~~GiDip~v~~VI~----~~----~p~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~e~ 444 (518)
++|||+|++++||+ || .|.|...|.||+||+||.| ..|.|++++++.+.
T Consensus 331 ~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 389 (720)
T 2zj8_A 331 SAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDP 389 (720)
T ss_dssp GGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCH
T ss_pred hccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccH
Confidence 99999999999998 76 5889999999999999988 47889999988773
No 23
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-45 Score=404.15 Aligned_cols=337 Identities=18% Similarity=0.192 Sum_probs=249.3
Q ss_pred CCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHH
Q 010111 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (518)
Q Consensus 35 l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La 114 (518)
+++.+...+...++..|+|+|.+|++.+. .|++++++||||||||++|.+|++..+.. +.+++|++||++|+
T Consensus 169 l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~----~g~dvLV~ApTGSGKTlva~l~i~~~l~~----g~rvlvl~PtraLa 240 (1108)
T 3l9o_A 169 IAEHKRVNEARTYPFTLDPFQDTAISCID----RGESVLVSAHTSAGKTVVAEYAIAQSLKN----KQRVIYTSPIKALS 240 (1108)
T ss_dssp TTTTCCCSCSSCCSSCCCHHHHHHHHHHT----TTCCEEEECCSSSHHHHHHHHHHHHHHHT----TCEEEEEESSHHHH
T ss_pred CChhhhHHHHHhCCCCCCHHHHHHHHHHH----cCCCEEEECCCCCChHHHHHHHHHHHHhc----CCeEEEEcCcHHHH
Confidence 33444444455556689999999998875 48999999999999999999999988754 34899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCC
Q 010111 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (518)
Q Consensus 115 ~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 194 (518)
.|+++.+..++. .+++++|+.+ ...+++|+|+||++|.+++.+ ....
T Consensus 241 ~Q~~~~l~~~~~----~VglltGd~~----------------------------~~~~~~IlV~Tpe~L~~~L~~-~~~~ 287 (1108)
T 3l9o_A 241 NQKYRELLAEFG----DVGLMTGDIT----------------------------INPDAGCLVMTTEILRSMLYR-GSEV 287 (1108)
T ss_dssp HHHHHHHHHHTS----SEEEECSSCB----------------------------CCCSCSEEEEEHHHHHHHHHH-CSSH
T ss_pred HHHHHHHHHHhC----CccEEeCccc----------------------------cCCCCCEEEeChHHHHHHHHc-Cccc
Confidence 999999999865 5777888765 234579999999999999987 3455
Q ss_pred CCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeE
Q 010111 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (518)
Q Consensus 195 ~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (518)
+.++++|||||||++.+.+++..+..++..++. ..+.+++||
T Consensus 288 l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~--------------------------------------~~qvl~lSA 329 (1108)
T 3l9o_A 288 MREVAWVIFDEVHYMRDKERGVVWEETIILLPD--------------------------------------KVRYVFLSA 329 (1108)
T ss_dssp HHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCT--------------------------------------TSEEEEEEC
T ss_pred cccCCEEEEhhhhhccccchHHHHHHHHHhcCC--------------------------------------CceEEEEcC
Confidence 888999999999999999999999988877642 238899999
Q ss_pred eecCChh--hhhhccCCCCeEEeeCCccccCccccceeeee---------cCC---------------------------
Q 010111 275 TLTQDPN--KLAQLDLHHPLFLTTGETRYKLPERLESYKLI---------CES--------------------------- 316 (518)
Q Consensus 275 T~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~--------------------------- 316 (518)
|+++... .+.......+..+...... +..+.++... .+.
T Consensus 330 Tipn~~e~a~~l~~~~~~~~~vi~~~~r---p~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 406 (1108)
T 3l9o_A 330 TIPNAMEFAEWICKIHSQPCHIVYTNFR---PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNST 406 (1108)
T ss_dssp SCSSCHHHHHHHHHHTCSCEEEEEECCC---SSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------
T ss_pred CCCCHHHHHHHHHhhcCCCeEEEecCCC---cccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhccccccc
Confidence 9876643 2333333333333222111 1111111110 000
Q ss_pred -------------------CCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCCC-------------------
Q 010111 317 -------------------KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL------------------- 358 (518)
Q Consensus 317 -------------------~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~------------------- 358 (518)
..+...+...+......++||||+++..|+.++..|...+..
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l 486 (1108)
T 3l9o_A 407 DSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALL 486 (1108)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHH
T ss_pred ccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc
Confidence 111222334444555679999999999999999998653210
Q ss_pred -----------------ceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCC-------
Q 010111 359 -----------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA------- 414 (518)
Q Consensus 359 -----------------~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~------- 414 (518)
...+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+++.|.
T Consensus 487 ~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~ 566 (1108)
T 3l9o_A 487 PETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRW 566 (1108)
T ss_dssp HHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEE
T ss_pred chhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCcccccc
Confidence 01289999999999999999999999999999999999999999999999887643
Q ss_pred -CccchhhhhhhcccCC--CCCcEEEEeecchhHHHHHHHHHHH
Q 010111 415 -YIKTYIHRAGRTARAG--QLGRCFTLLHKDEVCLVKRFKKLLQ 455 (518)
Q Consensus 415 -s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~e~~~~~~~~~~l~ 455 (518)
|+..|+||+||+||.| ..|.|++++++... ...+.+++.
T Consensus 567 iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~--~~~~~~l~~ 608 (1108)
T 3l9o_A 567 VSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKME--PQVAKGMVK 608 (1108)
T ss_dssp CCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCC--HHHHHHHHH
T ss_pred CCHHHHHHhhcccCCCCCCCceEEEEEecCCcC--HHHHHHHhc
Confidence 5567999999999999 57888888876533 134555544
No 24
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=2.3e-45 Score=393.29 Aligned_cols=350 Identities=17% Similarity=0.152 Sum_probs=217.2
Q ss_pred HHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhccc-CCccEEEEcCcHHHHHHHH
Q 010111 40 KVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVK 118 (518)
Q Consensus 40 ~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~-~~~~~lil~Pt~~La~Q~~ 118 (518)
..+++.+||.+|+++|.++++.++. |+|+++++|||+|||++|++|+++.+..... .+.++||++||++|+.|+.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~ 78 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNK 78 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHH
Confidence 4567889999999999999998874 8999999999999999999999988876431 2358999999999999999
Q ss_pred HHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcc
Q 010111 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHL 198 (518)
Q Consensus 119 ~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 198 (518)
+.+++++...++++..++|+........ .+..+++|+|+||++|.+.+.......+.++
T Consensus 79 ~~~~~~~~~~~~~v~~~~g~~~~~~~~~---------------------~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 79 SVFSKYFERHGYRVTGISGATAENVPVE---------------------QIVENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp HHHHHHTTTTTCCEEEECSSSCSSSCHH---------------------HHHHTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred HHHHHHhccCCceEEEEeCCccccccHH---------------------HhccCCCEEEECHHHHHHHHhcCcccccccc
Confidence 9999999888899999999875432221 2234689999999999999987432268899
Q ss_pred cEEEEechhHhhhHhHHh-HHHHHHHh-cccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEee
Q 010111 199 CYLVVDETDRLLREAYQA-WLPTVLQL-TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276 (518)
Q Consensus 199 ~~vViDEah~~~~~~~~~-~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 276 (518)
++||+||||++.+..... .+...+.. +. ....+..+.+++|||+
T Consensus 138 ~~vViDEaH~~~~~~~~~~i~~~~l~~~~~----------------------------------~~~~~~~~il~LTATp 183 (696)
T 2ykg_A 138 TLMIFDECHNTSKQHPYNMIMFNYLDQKLG----------------------------------GSSGPLPQVIGLTASV 183 (696)
T ss_dssp SEEEEETGGGCSTTCHHHHHHHHHHHHHHT----------------------------------TCCSCCCEEEEEESCC
T ss_pred cEEEEeCCCcccCcccHHHHHHHHHHHhhc----------------------------------ccCCCCCeEEEEeCcc
Confidence 999999999986543222 12112211 10 0001223778899998
Q ss_pred cCC--------hhhhhh---------------------ccCCCCeEEeeCCcc-cc------------------------
Q 010111 277 TQD--------PNKLAQ---------------------LDLHHPLFLTTGETR-YK------------------------ 302 (518)
Q Consensus 277 ~~~--------~~~~~~---------------------~~~~~~~~~~~~~~~-~~------------------------ 302 (518)
... ...+.. .....|......... ..
T Consensus 184 ~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~ 263 (696)
T 2ykg_A 184 GVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKD 263 (696)
T ss_dssp CCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 621 000100 001111110000000 00
Q ss_pred --------------------------------------------------------------------------------
Q 010111 303 -------------------------------------------------------------------------------- 302 (518)
Q Consensus 303 -------------------------------------------------------------------------------- 302 (518)
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~ 343 (696)
T 2ykg_A 264 LENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFS 343 (696)
T ss_dssp GGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHH
Confidence
Q ss_pred -----Cccccceeee----------------ecCCCCcHHHHHHHHHhc----CCCcEEEEcCChhhHHHHHHHHhhcCC
Q 010111 303 -----LPERLESYKL----------------ICESKLKPLYLVALLQSL----GEEKCIVFTSSVESTHRLCTLLNHFGE 357 (518)
Q Consensus 303 -----~~~~~~~~~~----------------~~~~~~k~~~l~~~l~~~----~~~~~lVf~~s~~~~~~l~~~L~~~~~ 357 (518)
....+.+... ......|...+..++... .++++||||+++..++.+++.|...+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~ 423 (696)
T 2ykg_A 344 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK 423 (696)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTT
T ss_pred HHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCC
Confidence 0000000000 001345667777777654 567999999999999999999987542
Q ss_pred -CceeEEEc--------cccCChHHHHHHHHHHhc-CCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcc
Q 010111 358 -LRIKIKEY--------SGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427 (518)
Q Consensus 358 -~~~~v~~~--------hg~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~g 427 (518)
..+.+..+ ||+|++.+|.+++++|++ |+++|||||+++++|||+|++++||+||+|.++..|+||+|| |
T Consensus 424 ~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-G 502 (696)
T 2ykg_A 424 LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-G 502 (696)
T ss_dssp CCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC--------
T ss_pred ccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-C
Confidence 12566666 669999999999999998 999999999999999999999999999999999999999999 9
Q ss_pred cCCCCCcEEEEeecchhHHHHHH
Q 010111 428 RAGQLGRCFTLLHKDEVCLVKRF 450 (518)
Q Consensus 428 R~g~~g~~~~~~~~~e~~~~~~~ 450 (518)
|. +.|.++.+++..+....+.+
T Consensus 503 R~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 503 RA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp ---CCCEEEEEESCHHHHHHHHH
T ss_pred cC-CCceEEEEecCCCHHHHHHH
Confidence 98 78999999998887555555
No 25
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=8.3e-45 Score=379.50 Aligned_cols=340 Identities=17% Similarity=0.201 Sum_probs=226.5
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcc-cCCccEEEEcCcHHHHHHHHHHHHHhcccc
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~-~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 128 (518)
+|+|+|.++++.++. |+++++++|||+|||++|++|+++.+.... ..+.++||++||++|+.|+.+.+.+++...
T Consensus 4 ~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhC----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 799999999998874 899999999999999999999999887643 125689999999999999999999999888
Q ss_pred CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhH
Q 010111 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (518)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (518)
++++..++|+.+...... .+..+++|+|+||++|.+.+.......+.++++||+||||+
T Consensus 80 ~~~~~~~~g~~~~~~~~~---------------------~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~ 138 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQ---------------------HIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHN 138 (555)
T ss_dssp TCCEEEECTTTGGGSCHH---------------------HHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGG
T ss_pred CcEEEEEcCCCcchhhHH---------------------HHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccc
Confidence 999999999986443322 22345799999999999999874333788999999999999
Q ss_pred hhhHhH-HhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCCh-------
Q 010111 209 LLREAY-QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP------- 280 (518)
Q Consensus 209 ~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~------- 280 (518)
+.+.+. ...+...+..... ....+..+.+++|||+....
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~l~lSAT~~~~~~~~~~~~ 185 (555)
T 3tbk_A 139 TSKNHPYNQIMFRYLDHKLG---------------------------------ESRDPLPQVVGLTASVGVGDAKTAEEA 185 (555)
T ss_dssp CSTTCHHHHHHHHHHHHHTS---------------------------------SCCSCCCEEEEEESCCCCTTCCSHHHH
T ss_pred cCCcchHHHHHHHHHHhhhc---------------------------------cccCCCCeEEEEecCcccCccccHHHH
Confidence 987643 2222222222110 00113347899999986431
Q ss_pred -hhh---hh------------------ccCCCCeEEeeCCccccCccccc------------------------------
Q 010111 281 -NKL---AQ------------------LDLHHPLFLTTGETRYKLPERLE------------------------------ 308 (518)
Q Consensus 281 -~~~---~~------------------~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 308 (518)
..+ .. .+...|......... ..+....
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 264 (555)
T 3tbk_A 186 MQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVAS-RTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNR 264 (555)
T ss_dssp HHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCC-CSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSC
T ss_pred HHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecC-cccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 100 00 011111111000000 0000000
Q ss_pred ------------------------------------------------------------------ee------------
Q 010111 309 ------------------------------------------------------------------SY------------ 310 (518)
Q Consensus 309 ------------------------------------------------------------------~~------------ 310 (518)
.+
T Consensus 265 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (555)
T 3tbk_A 265 EFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDET 344 (555)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----H
T ss_pred cccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchH
Confidence 00
Q ss_pred -------------------eeecCCCCcHHHHHHHHHh----cCCCcEEEEcCChhhHHHHHHHHhhcCC---------C
Q 010111 311 -------------------KLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE---------L 358 (518)
Q Consensus 311 -------------------~~~~~~~~k~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~L~~~~~---------~ 358 (518)
........|...+..++.. ....++||||+++.+++.+++.|...+. .
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 424 (555)
T 3tbk_A 345 ERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILT 424 (555)
T ss_dssp HHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECC
T ss_pred HHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEE
Confidence 0000124455666666654 3568999999999999999999987531 1
Q ss_pred ceeEEEccccCChHHHHHHHHHHhc-CCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEE
Q 010111 359 RIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 437 (518)
Q Consensus 359 ~~~v~~~hg~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~ 437 (518)
+.....+||+|++.+|.+++++|++ |+++|||||+++++|||+|++++||+||+|+|+..|+||+|| ||. +.|.+++
T Consensus 425 g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~ 502 (555)
T 3tbk_A 425 GRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFL 502 (555)
T ss_dssp C--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEE
T ss_pred ecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEE
Confidence 2345556779999999999999999 999999999999999999999999999999999999999999 999 8999999
Q ss_pred EeecchhHHHHHH
Q 010111 438 LLHKDEVCLVKRF 450 (518)
Q Consensus 438 ~~~~~e~~~~~~~ 450 (518)
|+++.+......+
T Consensus 503 l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 503 LTSSADVIEKEKA 515 (555)
T ss_dssp EESCHHHHHHHHH
T ss_pred EEcCCCHHHHHHH
Confidence 9998887655555
No 26
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.9e-44 Score=395.61 Aligned_cols=342 Identities=18% Similarity=0.252 Sum_probs=253.9
Q ss_pred HHHHH-hCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHH
Q 010111 40 KVALQ-NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (518)
Q Consensus 40 ~~~l~-~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~ 118 (518)
.+.+. .+|| +|+|+|.+|++.++. |+|++++||||||||++|+++++..+. .+.++||++||++|+.|++
T Consensus 68 ~~~~~~~~gf-~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~~----~~~~~Lil~PtreLa~Q~~ 138 (1104)
T 4ddu_A 68 RSFFKKKFGK-DLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVKQTL 138 (1104)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHHT----TTCCEEEEESSHHHHHHHH
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHHh----cCCeEEEEechHHHHHHHH
Confidence 33443 4788 799999999998874 899999999999999988888887663 3458999999999999999
Q ss_pred HHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcC-CCcEEEeCChHHHHhHhcCCCCCCCc
Q 010111 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLEH 197 (518)
Q Consensus 119 ~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 197 (518)
+.++.++ ..++++..++|+.+...+... +..+.. .++|+|+||++|.+++.. +.+.+
T Consensus 139 ~~l~~l~-~~~i~v~~l~Gg~~~~er~~~------------------~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~ 196 (1104)
T 4ddu_A 139 ERLQKLA-DEKVKIFGFYSSMKKEEKEKF------------------EKSFEEDDYHILVFSTQFVSKNREK---LSQKR 196 (1104)
T ss_dssp HHHHTTS-CTTSCEEEECTTCCTTHHHHH------------------HHHHHTSCCSEEEEEHHHHHHSHHH---HHTSC
T ss_pred HHHHHhh-CCCCeEEEEeCCCCHHHHHHH------------------HHHHhCCCCCEEEECHHHHHHHHHh---hcccC
Confidence 9999987 678999999999886332111 123334 489999999999888764 55778
Q ss_pred ccEEEEechhHhh----------h-HhHHhH-HHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCC
Q 010111 198 LCYLVVDETDRLL----------R-EAYQAW-LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265 (518)
Q Consensus 198 ~~~vViDEah~~~----------~-~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (518)
+++||+||||++. + .+|... +..++..++.... +. .+ ....
T Consensus 197 l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~----------------~~---------~~--~~~~ 249 (1104)
T 4ddu_A 197 FDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKI----------------YE---------RP--KNLK 249 (1104)
T ss_dssp CSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSC----------------CC---------CC--SSCC
T ss_pred cCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchh----------------hh---------hh--ccCC
Confidence 9999999997655 3 555555 6777766542100 00 00 0003
Q ss_pred ceeeEEEeEe-ecCChhh-hhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChh
Q 010111 266 RLVKMVLSAT-LTQDPNK-LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 343 (518)
Q Consensus 266 ~~~~i~~SaT-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~ 343 (518)
..|.+++||| .+..... +....+. +..... ......+.+.+..+ .+...+..+++.. ++++||||+++.
T Consensus 250 ~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~-~~~~~~i~~~~~~~---~k~~~L~~ll~~~-~~~~LVF~~s~~ 320 (1104)
T 4ddu_A 250 PGILVVSSATAKPRGIRPLLFRDLLN----FTVGRL-VSVARNITHVRISS---RSKEKLVELLEIF-RDGILIFAQTEE 320 (1104)
T ss_dssp CCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBC-CCCCCCEEEEEESC---CCHHHHHHHHHHH-CSSEEEEESSSH
T ss_pred CceEEEEcCCCCcHHHHHHHhhccee----EEeccC-CCCcCCceeEEEec---CHHHHHHHHHHhc-CCCEEEEECcHH
Confidence 3489999999 4444332 2222211 111111 12233444444443 5777778888774 489999999999
Q ss_pred hHHHHHHHHhhcCCCceeEE-EccccCChHHHHHHHHHHhcCCceEEEE----cCccccCCCCCC-CCEEEEcCCCC---
Q 010111 344 STHRLCTLLNHFGELRIKIK-EYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEG-VNNVVNYDKPA--- 414 (518)
Q Consensus 344 ~~~~l~~~L~~~~~~~~~v~-~~hg~~~~~~r~~~~~~f~~g~~~vLva----T~~~~~GiDip~-v~~VI~~~~p~--- 414 (518)
.++.+++.|...+ +.+. .+||. |.+ ++.|++|+.+|||| |+++++|||+|+ |++||+||+|.
T Consensus 321 ~a~~l~~~L~~~g---~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~ 391 (1104)
T 4ddu_A 321 EGKELYEYLKRFK---FNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRF 391 (1104)
T ss_dssp HHHHHHHHHHHTT---CCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEE
T ss_pred HHHHHHHHHHhCC---CCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCC
Confidence 9999999999876 8888 99982 555 99999999999999 999999999999 99999999998
Q ss_pred ---------------------------------------------------------------------Cccchhhhhhh
Q 010111 415 ---------------------------------------------------------------------YIKTYIHRAGR 425 (518)
Q Consensus 415 ---------------------------------------------------------------------s~~~~~Qr~GR 425 (518)
+..+|+||+||
T Consensus 392 Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GR 471 (1104)
T 4ddu_A 392 SLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGR 471 (1104)
T ss_dssp ECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHT
T ss_pred CcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCc
Confidence 66789999999
Q ss_pred cccCCCCC--cEEEEeecchhHHHHHHHHHHHhh
Q 010111 426 TARAGQLG--RCFTLLHKDEVCLVKRFKKLLQKA 457 (518)
Q Consensus 426 ~gR~g~~g--~~~~~~~~~e~~~~~~~~~~l~~~ 457 (518)
|||.|..| .+++++..+|...++.+++.++..
T Consensus 472 tgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~~~ 505 (1104)
T 4ddu_A 472 SSRILNGVLVKGVSVIFEEDEEIFESLKTRLLLI 505 (1104)
T ss_dssp TCCEETTEECCEEEEEECCCHHHHHHHHHHHHHH
T ss_pred hhcccCCCcccceEEEEEecHHHHHHHHHHHhhh
Confidence 99965433 455555557887788888887754
No 27
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=3.9e-45 Score=390.10 Aligned_cols=334 Identities=23% Similarity=0.292 Sum_probs=253.6
Q ss_pred CCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHH
Q 010111 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (518)
Q Consensus 35 l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La 114 (518)
|++.+.+.++++||.+|+|+|.++++.+. .+++++++||||||||+++.+|+++.+.+ +.+++|++|+++|+
T Consensus 10 l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~~l~il~~~~~----~~~~l~i~P~r~La 81 (702)
T 2p6r_A 10 ISSYAVGILKEEGIEELFPPQAEAVEKVF----SGKNLLLAMPTAAGKTLLAEMAMVREAIK----GGKSLYVVPLRALA 81 (702)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHT----TCSCEEEECSSHHHHHHHHHHHHHHHHHT----TCCEEEEESSHHHH
T ss_pred cCHHHHHHHHhCCCCCCCHHHHHHHHHHh----CCCcEEEEcCCccHHHHHHHHHHHHHHHh----CCcEEEEeCcHHHH
Confidence 78899999999999999999999998855 48999999999999999999999988764 34899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCC
Q 010111 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (518)
Q Consensus 115 ~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 194 (518)
.|+++.++.+.. .+++++..+|+...... ...+++|+|+||+++...+.+ ....
T Consensus 82 ~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~------------------------~~~~~~Iiv~Tpe~l~~~l~~-~~~~ 135 (702)
T 2p6r_A 82 GEKYESFKKWEK-IGLRIGISTGDYESRDE------------------------HLGDCDIIVTTSEKADSLIRN-RASW 135 (702)
T ss_dssp HHHHHHHTTTTT-TTCCEEEECSSCBCCSS------------------------CSTTCSEEEEEHHHHHHHHHT-TCSG
T ss_pred HHHHHHHHHHHh-cCCEEEEEeCCCCcchh------------------------hccCCCEEEECHHHHHHHHHc-ChhH
Confidence 999999965543 48899999997653211 123689999999999998887 3445
Q ss_pred CCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeE
Q 010111 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (518)
Q Consensus 195 ~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (518)
++++++||+||||.+.+.+++..++.++..+.... +..+.+++||
T Consensus 136 l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~-----------------------------------~~~~ii~lSA 180 (702)
T 2p6r_A 136 IKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMN-----------------------------------KALRVIGLSA 180 (702)
T ss_dssp GGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHC-----------------------------------TTCEEEEEEC
T ss_pred HhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcC-----------------------------------cCceEEEECC
Confidence 78999999999999988888888888877654211 2348899999
Q ss_pred eecCChhhhhhccCCCCeEEeeCCccccCccccc----eeeeecCCC-------CcHHHHHHHHHhcCCCcEEEEcCChh
Q 010111 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE----SYKLICESK-------LKPLYLVALLQSLGEEKCIVFTSSVE 343 (518)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-------~k~~~l~~~l~~~~~~~~lVf~~s~~ 343 (518)
|+++ ...+.... ..+. +..... ..+.... ......+.. .+...+...+. .++++||||++++
T Consensus 181 Tl~n-~~~~~~~l-~~~~-~~~~~r--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~ 253 (702)
T 2p6r_A 181 TAPN-VTEIAEWL-DADY-YVSDWR--PVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRR 253 (702)
T ss_dssp CCTT-HHHHHHHT-TCEE-EECCCC--SSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHH
T ss_pred CcCC-HHHHHHHh-CCCc-ccCCCC--CccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHH
Confidence 9974 44444432 2222 111111 1110000 000001111 13334444443 4689999999999
Q ss_pred hHHHHHHHHhhcCC---------------------------CceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccc
Q 010111 344 STHRLCTLLNHFGE---------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396 (518)
Q Consensus 344 ~~~~l~~~L~~~~~---------------------------~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 396 (518)
.++.+++.|..... .+..+..+||++++.+|..+++.|++|.++|||||++++
T Consensus 254 ~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~ 333 (702)
T 2p6r_A 254 GAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLA 333 (702)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTT
T ss_pred HHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHh
Confidence 99999999875310 013588899999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEE----cC---CCCCccchhhhhhhcccCC--CCCcEEEEeecchh
Q 010111 397 RGMDVEGVNNVVN----YD---KPAYIKTYIHRAGRTARAG--QLGRCFTLLHKDEV 444 (518)
Q Consensus 397 ~GiDip~v~~VI~----~~---~p~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~e~ 444 (518)
+|||+|++++||+ || .|.|..+|.||+||+||.| ..|.|+.++++.+.
T Consensus 334 ~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 334 AGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp SSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGH
T ss_pred ccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccH
Confidence 9999999999998 66 6889999999999999988 47899999988774
No 28
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=5.4e-45 Score=400.50 Aligned_cols=339 Identities=20% Similarity=0.289 Sum_probs=256.2
Q ss_pred HHHHH-hCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHH
Q 010111 40 KVALQ-NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (518)
Q Consensus 40 ~~~l~-~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~ 118 (518)
.+.+. .+||. | ++|.++++.++. |+|++++||||||||+ |.+|++..+.. .+.++||++||++|+.|++
T Consensus 47 ~~~~~~~~g~~-p-~iQ~~ai~~il~----g~dvlv~apTGSGKTl-~~lp~l~~~~~---~~~~~lil~PtreLa~Q~~ 116 (1054)
T 1gku_B 47 VEFFRKCVGEP-R-AIQKMWAKRILR----KESFAATAPTGVGKTS-FGLAMSLFLAL---KGKRCYVIFPTSLLVIQAA 116 (1054)
T ss_dssp HHHHHTTTCSC-C-HHHHHHHHHHHT----TCCEECCCCBTSCSHH-HHHHHHHHHHT---TSCCEEEEESCHHHHHHHH
T ss_pred HHHHHHhcCCC-H-HHHHHHHHHHHh----CCCEEEEcCCCCCHHH-HHHHHHHHHhh---cCCeEEEEeccHHHHHHHH
Confidence 34444 48998 9 999999998884 8999999999999998 88999887765 3568999999999999999
Q ss_pred HHHHHhccccCc----eEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCC
Q 010111 119 DVFAAIAPAVGL----SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (518)
Q Consensus 119 ~~~~~~~~~~~~----~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 194 (518)
+.+++++...++ ++..++|+.+...+... .+.+.. ++|+|+||++|.+++.+
T Consensus 117 ~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~------------------~~~l~~-~~IlV~TP~~L~~~l~~----- 172 (1054)
T 1gku_B 117 ETIRKYAEKAGVGTENLIGYYHGRIPKREKENF------------------MQNLRN-FKIVITTTQFLSKHYRE----- 172 (1054)
T ss_dssp HHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHH------------------HHSGGG-CSEEEEEHHHHHHCSTT-----
T ss_pred HHHHHHHhhcCCCccceEEEEeCCCChhhHHHH------------------HhhccC-CCEEEEcHHHHHHHHHH-----
Confidence 999999988888 89999999887664322 123334 89999999999998765
Q ss_pred CCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeE
Q 010111 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (518)
Q Consensus 195 ~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (518)
+.++++||+||||++++ ++..+..++..+....... . .......+.+++||
T Consensus 173 L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~--------~-------------------~~~~~~~q~~l~SA 223 (1054)
T 1gku_B 173 LGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLK--------T-------------------KSWVGEARGCLMVS 223 (1054)
T ss_dssp SCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETT--------T-------------------TEEEECCSSEEEEC
T ss_pred hccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhh--------h-------------------hhcccCCceEEEEe
Confidence 55899999999999988 5666777776543111000 0 00012237799999
Q ss_pred eecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhh
Q 010111 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 354 (518)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~ 354 (518)
|++.. ..+....+..+..+...... .....+.+... ...+...+..+++.. ++++||||+++..|+.+++.|..
T Consensus 224 T~t~~-~~~~~~~~~~~~~i~v~~~~-~~~~~i~~~~~---~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~ 297 (1054)
T 1gku_B 224 TATAK-KGKKAELFRQLLNFDIGSSR-ITVRNVEDVAV---NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKN 297 (1054)
T ss_dssp CCCSC-CCTTHHHHHHHHCCCCSCCE-ECCCCEEEEEE---SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTT
T ss_pred cCCCc-hhHHHHHhhcceEEEccCcc-cCcCCceEEEe---chhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhh
Confidence 99877 43333333222222222221 11223333333 355666677777765 57899999999999999999986
Q ss_pred cCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEE----cCccccCCCCCCC-CEEEEcCCC----------------
Q 010111 355 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEGV-NNVVNYDKP---------------- 413 (518)
Q Consensus 355 ~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLva----T~~~~~GiDip~v-~~VI~~~~p---------------- 413 (518)
. +.+..+||++. .+++.|++|+.+|||| |+++++|||+|+| ++||++|.|
T Consensus 298 ~----~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~ 368 (1054)
T 1gku_B 298 K----FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQM 368 (1054)
T ss_dssp S----SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHH
T ss_pred c----cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHH
Confidence 4 78999999984 7889999999999999 9999999999995 999999999
Q ss_pred -------------------------------------------------------CCccchhhhhhhcccCCCCC--cEE
Q 010111 414 -------------------------------------------------------AYIKTYIHRAGRTARAGQLG--RCF 436 (518)
Q Consensus 414 -------------------------------------------------------~s~~~~~Qr~GR~gR~g~~g--~~~ 436 (518)
.+...|+||+||+||.|..| .++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~ 448 (1054)
T 1gku_B 369 VKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGA 448 (1054)
T ss_dssp HHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEE
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEE
Confidence 68899999999999988775 588
Q ss_pred EEeecchhHHHHHHHHHHHh
Q 010111 437 TLLHKDEVCLVKRFKKLLQK 456 (518)
Q Consensus 437 ~~~~~~e~~~~~~~~~~l~~ 456 (518)
+|+..+|...++.+.+.++.
T Consensus 449 ~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 449 SFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EEEECSCHHHHHHHHHHHHT
T ss_pred EEEEecCHHHHHHHHHHHhh
Confidence 88888888888888888776
No 29
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=5.8e-44 Score=385.76 Aligned_cols=339 Identities=19% Similarity=0.205 Sum_probs=206.1
Q ss_pred hCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhccc-CCccEEEEcCcHHHHHHHHHHHHH
Q 010111 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVKDVFAA 123 (518)
Q Consensus 45 ~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~-~~~~~lil~Pt~~La~Q~~~~~~~ 123 (518)
.+|+..|+|+|.++++.++. |+++++++|||+|||++|++|++..+..... .+.++||++||++|+.|+.+.+++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp -----CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHh----CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 46889999999999998874 8999999999999999999999998877421 256899999999999999999999
Q ss_pred hccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEE
Q 010111 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (518)
Q Consensus 124 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vVi 203 (518)
++...++++..++|+.+...... .+..+++|+|+||++|.+.+.......+.++++||+
T Consensus 319 ~~~~~~~~v~~~~g~~~~~~~~~---------------------~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 377 (797)
T 4a2q_A 319 HFERQGYSVQGISGENFSNVSVE---------------------KVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (797)
T ss_dssp HHGGGTCCEEEECCC-----CHH---------------------HHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred hcccCCceEEEEeCCcchhhhHH---------------------HhhCCCCEEEEchHHHHHHHHhccccccccCCEEEE
Confidence 99888999999999986544322 233468999999999999998743337889999999
Q ss_pred echhHhhhHhHHhH-HHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCCh--
Q 010111 204 DETDRLLREAYQAW-LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP-- 280 (518)
Q Consensus 204 DEah~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~-- 280 (518)
||||++.+.+.... +..++...... ..+..+.+++|||+....
T Consensus 378 DEaH~~~~~~~~~~i~~~~~~~~~~~----------------------------------~~~~~~~l~lSATp~~~~~~ 423 (797)
T 4a2q_A 378 DECHNTTGNHPYNVLMTRYLEQKFNS----------------------------------ASQLPQILGLTASVGVGNAK 423 (797)
T ss_dssp TTGGGCSTTSHHHHHHHHHHHHHHTT----------------------------------CCCCCEEEEEESCCCCTTCC
T ss_pred ECccccCCCccHHHHHHHHHHHhhcc----------------------------------CCCCCeEEEEcCCccccccc
Confidence 99999987643222 22222211000 112347899999985321
Q ss_pred ------hhh---h------------------hccCCCCeEEeeCCccccCccc---------------------------
Q 010111 281 ------NKL---A------------------QLDLHHPLFLTTGETRYKLPER--------------------------- 306 (518)
Q Consensus 281 ------~~~---~------------------~~~~~~~~~~~~~~~~~~~~~~--------------------------- 306 (518)
..+ . ......|......... ..+..
T Consensus 424 ~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~ 502 (797)
T 4a2q_A 424 NIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR-RIHNPFAAIISNLMSETEALMRTIYSVDTLSQ 502 (797)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCC-CSCCHHHHHHHHHHHHHHHHHHHC--------
T ss_pred cHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCC-CCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhh
Confidence 000 0 0011111111000000 00000
Q ss_pred cc-----e-----e------------------------------------------------------------------
Q 010111 307 LE-----S-----Y------------------------------------------------------------------ 310 (518)
Q Consensus 307 ~~-----~-----~------------------------------------------------------------------ 310 (518)
+. . +
T Consensus 503 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 582 (797)
T 4a2q_A 503 NSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGP 582 (797)
T ss_dssp ----CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT
T ss_pred hccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccC
Confidence 00 0 0
Q ss_pred -----------------------eeecCCCCcHHHHHHHHHh----cCCCcEEEEcCChhhHHHHHHHHhhcCC------
Q 010111 311 -----------------------KLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE------ 357 (518)
Q Consensus 311 -----------------------~~~~~~~~k~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~L~~~~~------ 357 (518)
........|...|..++.. ..+.++||||+++..++.+++.|+....
T Consensus 583 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~ 662 (797)
T 4a2q_A 583 YTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKP 662 (797)
T ss_dssp CCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccc
Confidence 0000023455566666654 4568999999999999999999986310
Q ss_pred ---CceeEEEccccCChHHHHHHHHHHhc-CCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCC
Q 010111 358 ---LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433 (518)
Q Consensus 358 ---~~~~v~~~hg~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g 433 (518)
.+.....+||+|++.+|..++++|++ |+++|||||+++++|||+|+|++||+||+|+|+..|+||+|| ||. +.|
T Consensus 663 ~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g 740 (797)
T 4a2q_A 663 GVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGS 740 (797)
T ss_dssp EEC----------------------------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CC
T ss_pred eEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCc
Confidence 23456677999999999999999999 999999999999999999999999999999999999999999 999 899
Q ss_pred cEEEEeecchhH
Q 010111 434 RCFTLLHKDEVC 445 (518)
Q Consensus 434 ~~~~~~~~~e~~ 445 (518)
.++.|+++.+..
T Consensus 741 ~~i~l~~~~~~e 752 (797)
T 4a2q_A 741 KCILVTSKTEVV 752 (797)
T ss_dssp CEEEEECCHHHH
T ss_pred eEEEEEeCCcHH
Confidence 999999987764
No 30
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-43 Score=384.17 Aligned_cols=317 Identities=19% Similarity=0.220 Sum_probs=243.4
Q ss_pred HHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHH
Q 010111 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (518)
Q Consensus 43 l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~ 122 (518)
...++| +|+++|.+|++.+.. +++++++||||+|||++|.++++..+.. +.++||++|+++|+.|+++.+.
T Consensus 80 ~~~~~f-~L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~~----g~rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 80 ARTYPF-TLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLKN----KQRVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp SCCCSS-CCCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHHT----TCEEEEEESSHHHHHHHHHHHH
T ss_pred HHhCCC-CCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhcc----CCeEEEECChHHHHHHHHHHHH
Confidence 345678 599999999988764 8999999999999999999999987754 3589999999999999999999
Q ss_pred HhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEE
Q 010111 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202 (518)
Q Consensus 123 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vV 202 (518)
.++. .++.++|+.+. ...++|+|+||++|.+++.+ ....+.++++||
T Consensus 151 ~~~~----~vglltGd~~~----------------------------~~~~~IvV~Tpe~L~~~L~~-~~~~l~~l~lVV 197 (1010)
T 2xgj_A 151 AEFG----DVGLMTGDITI----------------------------NPDAGCLVMTTEILRSMLYR-GSEVMREVAWVI 197 (1010)
T ss_dssp HHHS----CEEEECSSCEE----------------------------CTTCSEEEEEHHHHHHHHHH-TCTTGGGEEEEE
T ss_pred HHhC----CEEEEeCCCcc----------------------------CCCCCEEEEcHHHHHHHHHc-CcchhhcCCEEE
Confidence 8764 67788887652 23579999999999998877 446788999999
Q ss_pred EechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChh-
Q 010111 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN- 281 (518)
Q Consensus 203 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~- 281 (518)
+||||++.+.+++..++.++..++ +..+.+++|||+++...
T Consensus 198 iDEaH~l~d~~rg~~~e~il~~l~--------------------------------------~~~~il~LSATi~n~~e~ 239 (1010)
T 2xgj_A 198 FDEVHYMRDKERGVVWEETIILLP--------------------------------------DKVRYVFLSATIPNAMEF 239 (1010)
T ss_dssp EETGGGGGCTTTHHHHHHHHHHSC--------------------------------------TTCEEEEEECCCTTHHHH
T ss_pred EechhhhcccchhHHHHHHHHhcC--------------------------------------CCCeEEEEcCCCCCHHHH
Confidence 999999999888888888877653 22388999999875432
Q ss_pred -hhhhccCCCCeEEeeCCccccCccccceeeee---------cCC-----------------------------------
Q 010111 282 -KLAQLDLHHPLFLTTGETRYKLPERLESYKLI---------CES----------------------------------- 316 (518)
Q Consensus 282 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~----------------------------------- 316 (518)
.+.......+..+...... +..+.++... .+.
T Consensus 240 a~~l~~~~~~~~~vi~~~~r---p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~ 316 (1010)
T 2xgj_A 240 AEWICKIHSQPCHIVYTNFR---PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQ 316 (1010)
T ss_dssp HHHHHHHHTSCEEEEEECCC---SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------
T ss_pred HHHHHhhcCCCeEEEecCCC---cccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccccccccccccccc
Confidence 1111112223322221111 1111111110 000
Q ss_pred -----------CCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCCC---------------------------
Q 010111 317 -----------KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL--------------------------- 358 (518)
Q Consensus 317 -----------~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~--------------------------- 358 (518)
......+...+......++||||+++..|+.+++.|...+..
T Consensus 317 ~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~ 396 (1010)
T 2xgj_A 317 TYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELP 396 (1010)
T ss_dssp ------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCH
T ss_pred ccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcch
Confidence 111223444445555679999999999999999999763311
Q ss_pred ---------ceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEE----cCC----CCCccchhh
Q 010111 359 ---------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----YDK----PAYIKTYIH 421 (518)
Q Consensus 359 ---------~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~~~----p~s~~~~~Q 421 (518)
...+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||. |.++..|+|
T Consensus 397 ~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Q 476 (1010)
T 2xgj_A 397 QIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQ 476 (1010)
T ss_dssp HHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHH
T ss_pred hHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhH
Confidence 123889999999999999999999999999999999999999999999999 998 889999999
Q ss_pred hhhhcccCCC--CCcEEEEeecc
Q 010111 422 RAGRTARAGQ--LGRCFTLLHKD 442 (518)
Q Consensus 422 r~GR~gR~g~--~g~~~~~~~~~ 442 (518)
|+||+||.|. .|.|++++++.
T Consensus 477 r~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 477 MSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp HHTTBCCTTTCSSEEEEEEECSC
T ss_pred hhhhcccCCCCCceEEEEEECCC
Confidence 9999999996 59999999865
No 31
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=4.1e-43 Score=361.42 Aligned_cols=370 Identities=17% Similarity=0.165 Sum_probs=250.5
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
+|. .|+++|..+++.++. |+ ++.++||+|||++|++|++.+... +..++|++||++||.|+++++..++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~----G~--Iaem~TGsGKTlaf~LP~l~~~l~----g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNE----RC--IAEMRTGEGKTLTATLPAYLNALT----GKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHS----SE--EEECCTTSCHHHHHHHHHHHHHTT----SSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccC----Ce--eeeecCCchHHHHHHHHHHHHHHc----CCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 565 999999999988774 66 999999999999999999965443 3479999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHhHhcCC-----CCCCCccc
Q 010111 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 199 (518)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~-----~~~~~~~~ 199 (518)
..+++++++++||.+...+. +..+++|+||||++| ++++...- ...++.+.
T Consensus 140 ~~lgl~v~~i~GG~~~~~r~-----------------------~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~ 196 (853)
T 2fsf_A 140 EFLGLTVGINLPGMPAPAKR-----------------------EAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLH 196 (853)
T ss_dssp HHTTCCEEECCTTCCHHHHH-----------------------HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCC
T ss_pred HhcCCeEEEEeCCCCHHHHH-----------------------HhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCc
Confidence 99999999999998754332 223589999999999 78876532 24578899
Q ss_pred EEEEechhHhh-hH---------------hHHhHHHHHHHhcccc--------------------ccc------------
Q 010111 200 YLVVDETDRLL-RE---------------AYQAWLPTVLQLTRSD--------------------NEN------------ 231 (518)
Q Consensus 200 ~vViDEah~~~-~~---------------~~~~~~~~i~~~~~~~--------------------~~~------------ 231 (518)
++|+||||+|+ +. +++..+..|+..++.. ...
T Consensus 197 ~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~ 276 (853)
T 2fsf_A 197 YALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEE 276 (853)
T ss_dssp EEEESCHHHHTTTTTTCEEEEEEC--------------------------------------------------------
T ss_pred EEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHH
Confidence 99999999999 43 3556666666666431 000
Q ss_pred -------------ccCCccccccccc-ccchh---hh--------------------ccccccCCCC---CC--------
Q 010111 232 -------------RFSDASTFLPSAF-GSLKT---IR--------------------RCGVERGFKD---KP-------- 263 (518)
Q Consensus 232 -------------~~~~~~~~~~~~~-~~~~~---~~--------------------~~~~~~~~~~---~~-------- 263 (518)
.++.....+.+.. ..+.. +. +....+.+.+ ++
T Consensus 277 ~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~ 356 (853)
T 2fsf_A 277 LLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQ 356 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccce
Confidence 0000000000000 00000 00 0000000000 00
Q ss_pred ---C--------------CceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHH
Q 010111 264 ---Y--------------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 326 (518)
Q Consensus 264 ---~--------------~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 326 (518)
. .-.+...||+|......++...+....+ .++... +....-....+......|...+...
T Consensus 357 I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv--~IPtn~-p~~R~d~~d~v~~~~~~K~~al~~~ 433 (853)
T 2fsf_A 357 IQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTV--VVPTNR-PMIRKDLPDLVYMTEAEKIQAIIED 433 (853)
T ss_dssp CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEE--ECCCSS-CCCCEECCCEEESSHHHHHHHHHHH
T ss_pred ecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEE--EcCCCC-CceeecCCcEEEeCHHHHHHHHHHH
Confidence 0 0013456788877666666655443322 222211 1111112223455667788888887
Q ss_pred HHh--cCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCC
Q 010111 327 LQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 404 (518)
Q Consensus 327 l~~--~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v 404 (518)
+.. ..+.++||||+|+..++.+++.|...+ +++.++||++.+.++..+.++|+.| .|+||||+++||+||+..
T Consensus 434 i~~~~~~gqpvLVft~sie~se~Ls~~L~~~g---i~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~ 508 (853)
T 2fsf_A 434 IKERTAKGQPVLVGTISIEKSELVSNELTKAG---IKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLG 508 (853)
T ss_dssp HHHHHTTTCCEEEEESSHHHHHHHHHHHHHTT---CCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTT
T ss_pred HHHHhcCCCCEEEEECcHHHHHHHHHHHHHCC---CCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCC
Confidence 754 346789999999999999999999877 8999999999998888888999988 699999999999999963
Q ss_pred -------------------------------------CEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchhHH-
Q 010111 405 -------------------------------------NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCL- 446 (518)
Q Consensus 405 -------------------------------------~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~- 446 (518)
.+||+++.|.|...|.||+||+||+|.+|.+++|++.+|...
T Consensus 509 gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~l~r 588 (853)
T 2fsf_A 509 GSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMR 588 (853)
T ss_dssp CCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSGGGG
T ss_pred CchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHHHHH
Confidence 599999999999999999999999999999999999877432
Q ss_pred ---HHHHHHHHHhh
Q 010111 447 ---VKRFKKLLQKA 457 (518)
Q Consensus 447 ---~~~~~~~l~~~ 457 (518)
.+++..++...
T Consensus 589 ~f~~~~~~~~~~~~ 602 (853)
T 2fsf_A 589 IFASDRVSGMMRKL 602 (853)
T ss_dssp TTCCHHHHTTGGGG
T ss_pred HhhHHHHHHHHHhh
Confidence 24444455443
No 32
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4.5e-43 Score=397.54 Aligned_cols=351 Identities=19% Similarity=0.172 Sum_probs=258.9
Q ss_pred CCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHH
Q 010111 33 PCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (518)
Q Consensus 33 ~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~ 112 (518)
..|.+...+++...+|..++|+|.+|++.++. .++|++++||||||||++|.+|+++.+.+. ++.++||++|+++
T Consensus 909 s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~---~~~nvlv~APTGSGKTliaelail~~l~~~--~~~kavyi~P~ra 983 (1724)
T 4f92_B 909 SALRNSAFESLYQDKFPFFNPIQTQVFNTVYN---SDDNVFVGAPTGSGKTICAEFAILRMLLQS--SEGRCVYITPMEA 983 (1724)
T ss_dssp GGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHS---CCSCEEEECCTTSCCHHHHHHHHHHHHHHC--TTCCEEEECSCHH
T ss_pred ccccCHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCCcEEEEeCCCCCchHHHHHHHHHHHHhC--CCCEEEEEcChHH
Confidence 34667777888888999999999999998875 578999999999999999999999998875 3458999999999
Q ss_pred HHHHHHHHHHH-hccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCC
Q 010111 113 LALQVKDVFAA-IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 191 (518)
Q Consensus 113 La~Q~~~~~~~-~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~ 191 (518)
|+.|+++.+.+ +.+..+++|+.++|+....... ..+++|+||||+++..++.+..
T Consensus 984 La~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~------------------------~~~~~IiV~TPEkld~llr~~~ 1039 (1724)
T 4f92_B 984 LAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKL------------------------LGKGNIIISTPEKWDILSRRWK 1039 (1724)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHH------------------------HHHCSEEEECHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhchhcCCEEEEEECCCCcchhh------------------------cCCCCEEEECHHHHHHHHhCcc
Confidence 99999999875 5666799999999987654331 1346999999999977776643
Q ss_pred C-CCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeE
Q 010111 192 G-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (518)
Q Consensus 192 ~-~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (518)
. ..++++++||+||+|.+.+ .++..++.++..+..... ...+..|++
T Consensus 1040 ~~~~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~~i~~-------------------------------~~~~~~riI 1087 (1724)
T 4f92_B 1040 QRKNVQNINLFVVDEVHLIGG-ENGPVLEVICSRMRYISS-------------------------------QIERPIRIV 1087 (1724)
T ss_dssp TCHHHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHHHHHH-------------------------------TTSSCCEEE
T ss_pred cccccceeeEEEeechhhcCC-CCCccHHHHHHHHHHHHh-------------------------------hcCCCceEE
Confidence 3 2478899999999998766 467777777665432110 001335899
Q ss_pred EEeEeecCChhhhhhc-cCCCCeEEeeCCccccCccccceeeeecCCCCcH-------HHHHHHH-HhcCCCcEEEEcCC
Q 010111 271 VLSATLTQDPNKLAQL-DLHHPLFLTTGETRYKLPERLESYKLICESKLKP-------LYLVALL-QSLGEEKCIVFTSS 341 (518)
Q Consensus 271 ~~SaT~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-------~~l~~~l-~~~~~~~~lVf~~s 341 (518)
++|||+++ ...+..+ ............... |..+..+....+..... ..+...+ +....+++||||+|
T Consensus 1088 ~lSATl~N-~~dla~WL~~~~~~~~~~~~~~R--PvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~s 1164 (1724)
T 4f92_B 1088 ALSSSLSN-AKDVAHWLGCSATSTFNFHPNVR--PVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPS 1164 (1724)
T ss_dssp EEESCBTT-HHHHHHHHTCCSTTEEECCGGGC--SSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESS
T ss_pred EEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCC--CCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCC
Confidence 99999974 4444443 222222233332222 22233222222222111 1222333 33457899999999
Q ss_pred hhhHHHHHHHHhhcC-------------------------------CCceeEEEccccCChHHHHHHHHHHhcCCceEEE
Q 010111 342 VESTHRLCTLLNHFG-------------------------------ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390 (518)
Q Consensus 342 ~~~~~~l~~~L~~~~-------------------------------~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLv 390 (518)
+..|+.++..|.... .....++.|||+|++.+|..+++.|++|.++|||
T Consensus 1165 R~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLv 1244 (1724)
T 4f92_B 1165 RKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVV 1244 (1724)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEE
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEE
Confidence 999999887764310 0123589999999999999999999999999999
Q ss_pred EcCccccCCCCCCCCEEEE----c------CCCCCccchhhhhhhcccCCC--CCcEEEEeecchhHHH
Q 010111 391 SSDAMTRGMDVEGVNNVVN----Y------DKPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEVCLV 447 (518)
Q Consensus 391 aT~~~~~GiDip~v~~VI~----~------~~p~s~~~~~Qr~GR~gR~g~--~g~~~~~~~~~e~~~~ 447 (518)
||+++++|||+|...+||. | ..|.+..+|.||+|||||.|. .|.|++++.+.+...+
T Consensus 1245 aT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~ 1313 (1724)
T 4f92_B 1245 ASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFF 1313 (1724)
T ss_dssp EEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHH
T ss_pred EChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHH
Confidence 9999999999999888883 2 235678899999999999986 6889999998887433
No 33
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.4e-42 Score=356.79 Aligned_cols=322 Identities=24% Similarity=0.285 Sum_probs=240.3
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccC
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 129 (518)
+|+|+|.++++.++. + ++++.+|||+|||+++++++...+.. .+.++||++|+++|+.|+.+.+.+++...+
T Consensus 9 ~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~~---~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLTK---YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHHH---SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 799999999988775 4 99999999999999999999887762 345899999999999999999999875445
Q ss_pred ceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHh
Q 010111 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (518)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~ 209 (518)
.++..++|+........ ...+++|+|+||++|.+.+.. ..+.+.++++||+||||++
T Consensus 81 ~~v~~~~g~~~~~~~~~----------------------~~~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~ 137 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSK----------------------AWARAKVIVATPQTIENDLLA-GRISLEDVSLIVFDEAHRA 137 (494)
T ss_dssp GGEEEECSCSCHHHHHH----------------------HHHHCSEEEECHHHHHHHHHT-TSCCTTSCSEEEEETGGGC
T ss_pred hheEEeeCCcchhhhhh----------------------hccCCCEEEecHHHHHHHHhc-CCcchhhceEEEEECCccc
Confidence 68899999887654422 123479999999999998876 4567888999999999999
Q ss_pred hhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhh---c
Q 010111 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ---L 286 (518)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~---~ 286 (518)
.+......+...+.... +..+.+++|||+..+...+.. .
T Consensus 138 ~~~~~~~~~~~~~~~~~--------------------------------------~~~~~l~lTaTp~~~~~~~~~l~~~ 179 (494)
T 1wp9_A 138 VGNYAYVFIAREYKRQA--------------------------------------KNPLVIGLTASPGSTPEKIMEVINN 179 (494)
T ss_dssp STTCHHHHHHHHHHHHC--------------------------------------SSCCEEEEESCSCSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhcC--------------------------------------CCCeEEEEecCCCCCcHHHHHHHHh
Confidence 76533333332222211 122679999999754332211 1
Q ss_pred cCCCCeEEeeCCcc---------------ccCccccc-------------------------------------------
Q 010111 287 DLHHPLFLTTGETR---------------YKLPERLE------------------------------------------- 308 (518)
Q Consensus 287 ~~~~~~~~~~~~~~---------------~~~~~~~~------------------------------------------- 308 (518)
.............. ...+....
T Consensus 180 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (494)
T 1wp9_A 180 LGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIIN 259 (494)
T ss_dssp TTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHH
T ss_pred cChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHH
Confidence 11000000000000 00000000
Q ss_pred ---------------------------------------ee-----------------------------------eeec
Q 010111 309 ---------------------------------------SY-----------------------------------KLIC 314 (518)
Q Consensus 309 ---------------------------------------~~-----------------------------------~~~~ 314 (518)
.+ ....
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (494)
T 1wp9_A 260 EEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIG 339 (494)
T ss_dssp HHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHT
T ss_pred HHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcC
Confidence 00 0000
Q ss_pred CCCCcHHHHHHHHHh----cCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccc--------cCChHHHHHHHHHHh
Q 010111 315 ESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG--------LQRQSVRSKTLKAFR 382 (518)
Q Consensus 315 ~~~~k~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg--------~~~~~~r~~~~~~f~ 382 (518)
....|...+..++.. ..+.++||||+++..++.+++.|...+ +.+..+|| +++..+|.+++++|+
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~ 416 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDG---IKAKRFVGQASKENDRGLSQREQKLILDEFA 416 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTT---CCEEEECCSSCC-------CCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcC---CCcEEEeccccccccccCCHHHHHHHHHHHh
Confidence 334466667777765 468899999999999999999999875 88999999 999999999999999
Q ss_pred cCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchh
Q 010111 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (518)
Q Consensus 383 ~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~ 444 (518)
+|+++|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+ |.++.|+++++.
T Consensus 417 ~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 417 RGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp HTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSH
T ss_pred cCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCH
Confidence 9999999999999999999999999999999999999999999999997 999999998776
No 34
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.6e-43 Score=368.72 Aligned_cols=339 Identities=17% Similarity=0.213 Sum_probs=244.3
Q ss_pred CCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCC--CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHH
Q 010111 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (518)
Q Consensus 35 l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~--~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~ 112 (518)
-.+.+.+.++.++| +||++|.+|++.++..+..+ .+++++||||||||++|++|+++.+..+ .+++|++||++
T Consensus 354 ~~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g----~qvlvlaPtr~ 428 (780)
T 1gm5_A 354 EGKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG----FQTAFMVPTSI 428 (780)
T ss_dssp CTHHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT----SCEEEECSCHH
T ss_pred chHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC----CeEEEEeCcHH
Confidence 34667777889999 99999999999887643333 5899999999999999999999887653 48999999999
Q ss_pred HHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhc-CCCcEEEeCChHHHHhHhcCC
Q 010111 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATR 191 (518)
Q Consensus 113 La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~ 191 (518)
|+.|+++.+.+++...++++..++|+.+...+... +..+. ..++|+|+||+.+.+
T Consensus 429 La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~------------------~~~l~~g~~~IvVgT~~ll~~------ 484 (780)
T 1gm5_A 429 LAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKI------------------KSGLRNGQIDVVIGTHALIQE------ 484 (780)
T ss_dssp HHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHH------------------HHHHHSSCCCEEEECTTHHHH------
T ss_pred HHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHH------------------HHHHhcCCCCEEEECHHHHhh------
Confidence 99999999999998889999999999886654322 12233 358999999998754
Q ss_pred CCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEE
Q 010111 192 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (518)
Q Consensus 192 ~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (518)
...+.++++||+||+|++..... ..+. . .....+.++
T Consensus 485 ~~~~~~l~lVVIDEaHr~g~~qr--------~~l~----------------------------------~-~~~~~~vL~ 521 (780)
T 1gm5_A 485 DVHFKNLGLVIIDEQHRFGVKQR--------EALM----------------------------------N-KGKMVDTLV 521 (780)
T ss_dssp CCCCSCCCEEEEESCCCC-------------CCCC----------------------------------S-SSSCCCEEE
T ss_pred hhhccCCceEEecccchhhHHHH--------HHHH----------------------------------H-hCCCCCEEE
Confidence 34577899999999998632110 0000 0 002247899
Q ss_pred EeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHh--cCCCcEEEEcCChh------
Q 010111 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVE------ 343 (518)
Q Consensus 272 ~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~~------ 343 (518)
+|||+.+...............+... +..............+...+...+.. ..+.+++|||++++
T Consensus 522 mSATp~p~tl~~~~~g~~~~s~i~~~------p~~r~~i~~~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~ 595 (780)
T 1gm5_A 522 MSATPIPRSMALAFYGDLDVTVIDEM------PPGRKEVQTMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLN 595 (780)
T ss_dssp EESSCCCHHHHHHHTCCSSCEEECCC------CSSCCCCEECCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC-------
T ss_pred EeCCCCHHHHHHHHhCCcceeeeecc------CCCCcceEEEEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhh
Confidence 99998654433222111111111110 11111111111223344445555543 24678999999764
Q ss_pred --hHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCC-Cccchh
Q 010111 344 --STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYI 420 (518)
Q Consensus 344 --~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~-s~~~~~ 420 (518)
.++.+++.|......++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+++.|. +...|.
T Consensus 596 ~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~ 675 (780)
T 1gm5_A 596 VKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLH 675 (780)
T ss_dssp -CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHH
Confidence 46778888876112347899999999999999999999999999999999999999999999999999996 678899
Q ss_pred hhhhhcccCCCCCcEEEEeecchhHHHHHHH
Q 010111 421 HRAGRTARAGQLGRCFTLLHKDEVCLVKRFK 451 (518)
Q Consensus 421 Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~ 451 (518)
||+||+||.|+.|.|++++++.+....+++.
T Consensus 676 Qr~GRaGR~g~~g~~ill~~~~~~~~~~rl~ 706 (780)
T 1gm5_A 676 QLRGRVGRGGQEAYCFLVVGDVGEEAMERLR 706 (780)
T ss_dssp HHHHTSCCSSTTCEEECCCCSCCHHHHHHHH
T ss_pred HHhcccCcCCCCCEEEEEECCCChHHHHHHH
Confidence 9999999999999999999854443333433
No 35
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=5.7e-42 Score=353.16 Aligned_cols=370 Identities=18% Similarity=0.175 Sum_probs=265.9
Q ss_pred hCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 45 ~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
.+|+ .|+++|..+++.++. |+ ++.++||+|||++|.+|++.+... +..++|++||++||.|.++++..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~----G~--Iaem~TGeGKTLa~~LP~~l~aL~----g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHL----GN--VAEMKTGEGKTLTCVLPAYLNALA----GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHT----TE--EEECCTTSCHHHHTHHHHHHHHTT----TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhc----CC--EEEecCCCccHHHHHHHHHHHHHh----CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 4798 999999999998874 66 999999999999999999755443 237999999999999999999999
Q ss_pred ccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHhHhcCC-----CCCCCcc
Q 010111 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHL 198 (518)
Q Consensus 125 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~-----~~~~~~~ 198 (518)
...+|+++++++|+.+...+. ...++||+|+||++| ++++...- ...++.+
T Consensus 176 ~~~lGLsv~~i~gg~~~~~r~-----------------------~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l 232 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPDERR-----------------------VAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGH 232 (922)
T ss_dssp HHHTTCCEEECCTTCCHHHHH-----------------------HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCC
T ss_pred HhhcCCeEEEEeCCCCHHHHH-----------------------HhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCC
Confidence 999999999999998754432 223589999999999 77776531 3557889
Q ss_pred cEEEEechhHhh-h---------------HhHHhHHHHHHHhccc---------cccc------------------ccCC
Q 010111 199 CYLVVDETDRLL-R---------------EAYQAWLPTVLQLTRS---------DNEN------------------RFSD 235 (518)
Q Consensus 199 ~~vViDEah~~~-~---------------~~~~~~~~~i~~~~~~---------~~~~------------------~~~~ 235 (518)
.++|+||||+|+ + .+|+..+..|+..++. .... .++.
T Consensus 233 ~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsa 312 (922)
T 1nkt_A 233 HYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEA 312 (922)
T ss_dssp CEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCS
T ss_pred CEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCC
Confidence 999999999999 4 4677888888888762 1111 1111
Q ss_pred ccccccccc-ccchh-------------------hh----ccccccCC--------------CC----------------
Q 010111 236 ASTFLPSAF-GSLKT-------------------IR----RCGVERGF--------------KD---------------- 261 (518)
Q Consensus 236 ~~~~~~~~~-~~~~~-------------------~~----~~~~~~~~--------------~~---------------- 261 (518)
....+.+.. ..+.. +. +....+.+ .-
T Consensus 313 t~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyf 392 (922)
T 1nkt_A 313 ANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYF 392 (922)
T ss_dssp TTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHH
Confidence 100000000 00000 00 00000000 00
Q ss_pred CCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHh--cCCCcEEEEc
Q 010111 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFT 339 (518)
Q Consensus 262 ~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~ 339 (518)
..+ -+...||+|......++...+....+ .++... +....-....+......|...+...+.. ..+.++||||
T Consensus 393 r~Y--~kL~GMTGTa~te~~Ef~~iY~l~vv--~IPtn~-p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft 467 (922)
T 1nkt_A 393 RLY--DKLAGMTGTAQTEAAELHEIYKLGVV--SIPTNM-PMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGT 467 (922)
T ss_dssp TTS--SEEEEEESCCGGGHHHHHHHHCCEEE--ECCCSS-CCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred Hhh--hhhhccccCchhHHHHHHHHhCCCeE--EeCCCC-CcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 001 14567888887666666555543322 222211 1111111223445566788888877754 2467899999
Q ss_pred CChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCC---------------
Q 010111 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV--------------- 404 (518)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v--------------- 404 (518)
+|++.++.+++.|...+ +++.++||++.+.++..+.++|+.| .|+|||++++||+||+..
T Consensus 468 ~Sie~sE~Ls~~L~~~G---i~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~ 542 (922)
T 1nkt_A 468 TSVERSEYLSRQFTKRR---IPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERG 542 (922)
T ss_dssp SCHHHHHHHHHHHHHTT---CCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHCC---CCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhcc
Confidence 99999999999999877 8999999999888888888888888 799999999999999965
Q ss_pred -------------------------------------CEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchhHHH
Q 010111 405 -------------------------------------NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLV 447 (518)
Q Consensus 405 -------------------------------------~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~ 447 (518)
.+||+++.|.|...|.||+||+||.|.+|.+++|++.+|...-
T Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~r 622 (922)
T 1nkt_A 543 LDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMR 622 (922)
T ss_dssp CCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHH
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHHH
Confidence 4999999999999999999999999999999999998775332
Q ss_pred ----HHHHHHHHhhc
Q 010111 448 ----KRFKKLLQKAD 458 (518)
Q Consensus 448 ----~~~~~~l~~~~ 458 (518)
+++..++....
T Consensus 623 ~f~~~~~~~~~~~~~ 637 (922)
T 1nkt_A 623 RFNGAALETLLTRLN 637 (922)
T ss_dssp HTTHHHHHHHHHHTT
T ss_pred HhhhHHHHHHHHHhC
Confidence 45666666644
No 36
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.4e-42 Score=378.46 Aligned_cols=341 Identities=18% Similarity=0.207 Sum_probs=205.8
Q ss_pred HhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhccc-CCccEEEEcCcHHHHHHHHHHHH
Q 010111 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVKDVFA 122 (518)
Q Consensus 44 ~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~-~~~~~lil~Pt~~La~Q~~~~~~ 122 (518)
.-.|+.+|+|+|.++++.++. |+++++++|||+|||++|++|+++.+..... .+.++||++||++|+.|+.+.++
T Consensus 242 ~l~~~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~ 317 (936)
T 4a2w_A 242 PVYETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFK 317 (936)
T ss_dssp ------CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHc----CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 344688999999999998874 8999999999999999999999988776421 25689999999999999999999
Q ss_pred HhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEE
Q 010111 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202 (518)
Q Consensus 123 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vV 202 (518)
+++...++++..++|+.+...... .+..+++|+|+||++|.+.+.......+.++++||
T Consensus 318 ~~~~~~~~~v~~~~G~~~~~~~~~---------------------~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liV 376 (936)
T 4a2w_A 318 HHFERQGYSVQGISGENFSNVSVE---------------------KVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMI 376 (936)
T ss_dssp HHHHTTTCCEEEECCC-----CCH---------------------HHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEE
T ss_pred HHhcccCceEEEEECCcchhhHHH---------------------HhccCCCEEEecHHHHHHHHHcCccccccCCCEEE
Confidence 998888999999999986443221 22235799999999999999874333788999999
Q ss_pred EechhHhhhHhHH-hHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCCh-
Q 010111 203 VDETDRLLREAYQ-AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP- 280 (518)
Q Consensus 203 iDEah~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~- 280 (518)
+||||++.+.+.. ..+..++...... ..+..+.+++|||+....
T Consensus 377 iDEaH~~~~~~~~~~i~~~~~~~~~~~----------------------------------~~~~~~~l~LSATp~~~~~ 422 (936)
T 4a2w_A 377 FDECHNTTGNHPYNVLMTRYLEQKFNS----------------------------------ASQLPQILGLTASVGVGNA 422 (936)
T ss_dssp EETGGGCSTTCHHHHHHHHHHHHHHTT----------------------------------CSCCCEEEEEESCCCCTTC
T ss_pred EECccccCCCccHHHHHHHHHHHhhcc----------------------------------CCCcCeEEEecCCcccccc
Confidence 9999998776432 2222222211000 112347899999985321
Q ss_pred -------hhh---------------------hhccCCCCeEEeeCCcc-cc-----------------------------
Q 010111 281 -------NKL---------------------AQLDLHHPLFLTTGETR-YK----------------------------- 302 (518)
Q Consensus 281 -------~~~---------------------~~~~~~~~~~~~~~~~~-~~----------------------------- 302 (518)
..+ .......|......... ..
T Consensus 423 ~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~ 502 (936)
T 4a2w_A 423 KNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQ 502 (936)
T ss_dssp CSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC--------
T ss_pred hhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 000 00111122211110000 00
Q ss_pred Cccc----------c------------------------------------------------------cee--------
Q 010111 303 LPER----------L------------------------------------------------------ESY-------- 310 (518)
Q Consensus 303 ~~~~----------~------------------------------------------------------~~~-------- 310 (518)
.+.. + ..+
T Consensus 503 ~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~ 582 (936)
T 4a2w_A 503 NSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGP 582 (936)
T ss_dssp ----CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcc
Confidence 0000 0 000
Q ss_pred -----------------------eeecCCCCcHHHHHHHHHh----cCCCcEEEEcCChhhHHHHHHHHhhcCC------
Q 010111 311 -----------------------KLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE------ 357 (518)
Q Consensus 311 -----------------------~~~~~~~~k~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~L~~~~~------ 357 (518)
........|...|..++.. ..+.++||||+++..++.+++.|.....
T Consensus 583 ~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~ 662 (936)
T 4a2w_A 583 YTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKP 662 (936)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccce
Confidence 0000123455666666665 3468999999999999999999987511
Q ss_pred ---CceeEEEccccCChHHHHHHHHHHhc-CCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCC
Q 010111 358 ---LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433 (518)
Q Consensus 358 ---~~~~v~~~hg~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g 433 (518)
.+.....+||+|++.+|.+++++|++ |+++|||||+++++|||+|+|++||+||+|+|+..|+||+|| ||. +.|
T Consensus 663 ~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g 740 (936)
T 4a2w_A 663 GVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGS 740 (936)
T ss_dssp EEC----------------------------CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CC
T ss_pred eEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCC
Confidence 12455667899999999999999999 999999999999999999999999999999999999999999 999 799
Q ss_pred cEEEEeecchhH
Q 010111 434 RCFTLLHKDEVC 445 (518)
Q Consensus 434 ~~~~~~~~~e~~ 445 (518)
.++.|++..+..
T Consensus 741 ~vi~Li~~~t~e 752 (936)
T 4a2w_A 741 KCILVTSKTEVV 752 (936)
T ss_dssp CEEEEESCHHHH
T ss_pred EEEEEEeCCCHH
Confidence 999999887653
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.3e-42 Score=393.70 Aligned_cols=348 Identities=18% Similarity=0.231 Sum_probs=252.6
Q ss_pred CCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcc-------cCCccEEEE
Q 010111 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-------VRCLRALVV 107 (518)
Q Consensus 35 l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~-------~~~~~~lil 107 (518)
|++....+++ ||.+|+++|.++++.++. .++|++++||||||||++|.+++++.+.+.. ..+.++||+
T Consensus 66 Lp~~~~~~f~--g~~~ln~iQs~~~~~al~---~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyi 140 (1724)
T 4f92_B 66 LPKYAQAGFE--GFKTLNRIQSKLYRAALE---TDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYI 140 (1724)
T ss_dssp SCGGGSTTCT--TCSBCCHHHHHTHHHHHT---CCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEE
T ss_pred cCHHHHHhcC--CCCCCCHHHHHHHHHHHc---CCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEE
Confidence 5555554443 799999999999998876 5899999999999999999999999987532 235689999
Q ss_pred cCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhH
Q 010111 108 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (518)
Q Consensus 108 ~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l 187 (518)
+|+++|+.|+++.+.+.+...|++|..++|+.+.... ...+++|+||||+++..++
T Consensus 141 aP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~------------------------~~~~~~IlVtTpEkld~ll 196 (1724)
T 4f92_B 141 APMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKE------------------------EISATQIIVCTPEKWDIIT 196 (1724)
T ss_dssp CSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT------------------------TGGGCSEEEECHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc------------------------ccCCCCEEEECHHHHHHHH
Confidence 9999999999999999888889999999998764321 1245799999999986555
Q ss_pred hcCCC-CCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCc
Q 010111 188 NATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266 (518)
Q Consensus 188 ~~~~~-~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (518)
.+... ..++.+++||+||+|.+.+ .++..++.++..+...... ..+.
T Consensus 197 r~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~~-------------------------------~~~~ 244 (1724)
T 4f92_B 197 RKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNIEM-------------------------------TQED 244 (1724)
T ss_dssp TSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHHHHHHHHH-------------------------------HTCC
T ss_pred cCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHHHHHHHHh-------------------------------CCCC
Confidence 54322 2368899999999996655 6777777777654211000 0023
Q ss_pred eeeEEEeEeecCChhhhhhccCCCCe--EEeeCCccccCccccceeeeecCCCCcH---H----HHHHHHH-hcCCCcEE
Q 010111 267 LVKMVLSATLTQDPNKLAQLDLHHPL--FLTTGETRYKLPERLESYKLICESKLKP---L----YLVALLQ-SLGEEKCI 336 (518)
Q Consensus 267 ~~~i~~SaT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~k~---~----~l~~~l~-~~~~~~~l 336 (518)
+|.+++|||++ +...++.+....+. ....... ..|..+.+.+......... . .+...+. ...++++|
T Consensus 245 ~riI~LSATl~-N~~dvA~wL~~~~~~~~~~~~~~--~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~L 321 (1724)
T 4f92_B 245 VRLIGLSATLP-NYEDVATFLRVDPAKGLFYFDNS--FRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL 321 (1724)
T ss_dssp CEEEEEECSCT-THHHHHHHTTCCHHHHEEECCGG--GCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEE
T ss_pred CcEEEEecccC-CHHHHHHHhCCCCCCCeEEECCC--CccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEE
Confidence 48999999996 44555443322211 1111111 1223333333322222211 1 1222222 23467999
Q ss_pred EEcCChhhHHHHHHHHhhcC----C------------------------------CceeEEEccccCChHHHHHHHHHHh
Q 010111 337 VFTSSVESTHRLCTLLNHFG----E------------------------------LRIKIKEYSGLQRQSVRSKTLKAFR 382 (518)
Q Consensus 337 Vf~~s~~~~~~l~~~L~~~~----~------------------------------~~~~v~~~hg~~~~~~r~~~~~~f~ 382 (518)
|||+|++.|+.+++.|.+.. . ....+++|||+|++.+|..+++.|+
T Consensus 322 VF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~ 401 (1724)
T 4f92_B 322 VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFA 401 (1724)
T ss_dssp EECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHH
Confidence 99999999999988885420 0 1235899999999999999999999
Q ss_pred cCCceEEEEcCccccCCCCCCCCEEEE----cCC------CCCccchhhhhhhcccCCC--CCcEEEEeecchhHH
Q 010111 383 EGKIQVLVSSDAMTRGMDVEGVNNVVN----YDK------PAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEVCL 446 (518)
Q Consensus 383 ~g~~~vLvaT~~~~~GiDip~v~~VI~----~~~------p~s~~~~~Qr~GR~gR~g~--~g~~~~~~~~~e~~~ 446 (518)
+|.++|||||++++.|||+|..++||. |+. |.++.+|.||+|||||.|. .|.+++++++.+...
T Consensus 402 ~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~ 477 (1724)
T 4f92_B 402 DKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQY 477 (1724)
T ss_dssp TTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCH
T ss_pred CCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHH
Confidence 999999999999999999999999985 443 4578899999999999874 689999998888743
No 38
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1e-41 Score=371.14 Aligned_cols=316 Identities=16% Similarity=0.172 Sum_probs=235.9
Q ss_pred hCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 45 ~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
.++| +|+++|.++++.++. |+++++.||||+|||++|++++...+.. +.++||++|+++|+.|+++.+.++
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~----g~~vlv~apTGsGKTlv~~~~i~~~~~~----g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQ----GDSVFVAAHTSAGKTVVAEYAIAMAHRN----MTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHT----TCEEEEECCTTSCSHHHHHHHHHHHHHT----TCEEEEEESCGGGHHHHHHHHHTT
T ss_pred hCCC-CCCHHHHHHHHHHHc----CCCEEEEECCCCcHHHHHHHHHHHHHhc----CCeEEEEeCCHHHHHHHHHHHHHH
Confidence 4677 689999999998874 8999999999999999999998876543 348999999999999999999987
Q ss_pred ccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEe
Q 010111 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204 (518)
Q Consensus 125 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViD 204 (518)
+. ++++..++|+.+. ...++|+|+||++|.+.+.. ....+.++++||+|
T Consensus 106 ~~--~~~v~~l~G~~~~----------------------------~~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~lvViD 154 (997)
T 4a4z_A 106 FD--DVNIGLITGDVQI----------------------------NPDANCLIMTTEILRSMLYR-GADLIRDVEFVIFD 154 (997)
T ss_dssp C----CCEEEECSSCEE----------------------------CTTSSEEEEEHHHHHHHHHH-TCSGGGGEEEEEEC
T ss_pred cC--CCeEEEEeCCCcc----------------------------CCCCCEEEECHHHHHHHHHh-CchhhcCCCEEEEE
Confidence 54 6788889988642 23479999999999998877 34567899999999
Q ss_pred chhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhh
Q 010111 205 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 284 (518)
Q Consensus 205 Eah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~ 284 (518)
|||++.+.+++..++.++..++ +..+.+++|||+++......
T Consensus 155 EaH~l~d~~~g~~~e~ii~~l~--------------------------------------~~v~iIlLSAT~~n~~ef~~ 196 (997)
T 4a4z_A 155 EVHYVNDQDRGVVWEEVIIMLP--------------------------------------QHVKFILLSATVPNTYEFAN 196 (997)
T ss_dssp CTTCCCTTCTTCCHHHHHHHSC--------------------------------------TTCEEEEEECCCTTHHHHHH
T ss_pred CcccccccchHHHHHHHHHhcc--------------------------------------cCCCEEEEcCCCCChHHHHH
Confidence 9999999999888888877654 22388999999875432211
Q ss_pred hcc--CCCCeEE-eeCCccccCc---------------------------------------------------------
Q 010111 285 QLD--LHHPLFL-TTGETRYKLP--------------------------------------------------------- 304 (518)
Q Consensus 285 ~~~--~~~~~~~-~~~~~~~~~~--------------------------------------------------------- 304 (518)
+.. ...+... .......++.
T Consensus 197 ~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (997)
T 4a4z_A 197 WIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRG 276 (997)
T ss_dssp HHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------------------------
T ss_pred HHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccc
Confidence 111 0011111 1000000000
Q ss_pred --------------------------------cccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHH
Q 010111 305 --------------------------------ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (518)
Q Consensus 305 --------------------------------~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L 352 (518)
.....+...+....+...+...+......++||||++++.|+.++..|
T Consensus 277 ~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L 356 (997)
T 4a4z_A 277 GSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWL 356 (997)
T ss_dssp ----------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHH
Confidence 000001111123344556777777777789999999999999999999
Q ss_pred hhcCCC------------------------------------ceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccc
Q 010111 353 NHFGEL------------------------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396 (518)
Q Consensus 353 ~~~~~~------------------------------------~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 396 (518)
...+.. ...+..+||+|++.+|..+++.|++|.++|||||++++
T Consensus 357 ~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a 436 (997)
T 4a4z_A 357 EGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFA 436 (997)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhh
Confidence 764321 12578999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEcCCCC---------CccchhhhhhhcccCC--CCCcEEEEe
Q 010111 397 RGMDVEGVNNVVNYDKPA---------YIKTYIHRAGRTARAG--QLGRCFTLL 439 (518)
Q Consensus 397 ~GiDip~v~~VI~~~~p~---------s~~~~~Qr~GR~gR~g--~~g~~~~~~ 439 (518)
+|||+|+ ..||+++.|. |+..|+||+|||||.| ..|.|++++
T Consensus 437 ~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 437 MGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp HSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred CCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEec
Confidence 9999999 5555555554 8999999999999998 456677666
No 39
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=7.6e-42 Score=366.26 Aligned_cols=337 Identities=18% Similarity=0.234 Sum_probs=219.9
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhccc--CCccEEEEcCcHHHHHHH-HHHHHHhcc
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQV-KDVFAAIAP 126 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~--~~~~~lil~Pt~~La~Q~-~~~~~~~~~ 126 (518)
+|+|+|.++++.++. |+++++.+|||+|||++|++|+++.+..... .+.++||++|+++|+.|+ .+.+++++.
T Consensus 7 ~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 7 QLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 899999999998875 8999999999999999999999988776421 235899999999999999 999999876
Q ss_pred ccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhc-----CCCCCCCcccEE
Q 010111 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-----TRGFTLEHLCYL 201 (518)
Q Consensus 127 ~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-----~~~~~~~~~~~v 201 (518)
. ++++..++|+........ .+...++|+|+||++|.+.+.+ ...+.+.++++|
T Consensus 83 ~-~~~v~~~~g~~~~~~~~~---------------------~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lv 140 (699)
T 4gl2_A 83 K-WYRVIGLSGDTQLKISFP---------------------EVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLI 140 (699)
T ss_dssp T-TSCEEEEC----CCCCHH---------------------HHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEE
T ss_pred c-CceEEEEeCCcchhhHHH---------------------hhhcCCCEEEECHHHHHHHHhccccccccceecccCcEE
Confidence 5 588999998875432211 2235689999999999988843 234678899999
Q ss_pred EEechhHhhhHhHHhH-HHHHHHhc-ccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCC
Q 010111 202 VVDETDRLLREAYQAW-LPTVLQLT-RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279 (518)
Q Consensus 202 ViDEah~~~~~~~~~~-~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~ 279 (518)
|+||||++........ +..++... ...... .-.....+..+.+++|||+...
T Consensus 141 ViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~--------------------------~~~~~~~~~~~il~lTATp~~~ 194 (699)
T 4gl2_A 141 IIDECHHTNKEAVYNNIMRHYLMQKLKNNRLK--------------------------KENKPVIPLPQILGLTASPGVG 194 (699)
T ss_dssp EEESGGGCBTTBSSCSHHHHHHHHHHHHHHHH--------------------------C----CCCCCEEEEECSCCCCC
T ss_pred EEECccccCccchHHHHHHHHHHhhhcccccc--------------------------cccccCCCCCEEEEeccccccc
Confidence 9999998855443322 22222110 000000 0000111233789999999863
Q ss_pred h--------hhhh---hc------------------cCCCCeEEeeC-CccccCc---------c---------cccee-
Q 010111 280 P--------NKLA---QL------------------DLHHPLFLTTG-ETRYKLP---------E---------RLESY- 310 (518)
Q Consensus 280 ~--------~~~~---~~------------------~~~~~~~~~~~-~~~~~~~---------~---------~~~~~- 310 (518)
. ..+. .. ....|...... ......+ . ....+
T Consensus 195 ~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g 274 (699)
T 4gl2_A 195 GATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFG 274 (699)
T ss_dssp SCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSS
T ss_pred ccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhcc
Confidence 1 0110 00 01111111000 0000000 0 00000
Q ss_pred --------------------------------------------------------------------------------
Q 010111 311 -------------------------------------------------------------------------------- 310 (518)
Q Consensus 311 -------------------------------------------------------------------------------- 310 (518)
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (699)
T 4gl2_A 275 TQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDET 354 (699)
T ss_dssp SHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHH
T ss_pred chHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchh
Confidence
Q ss_pred ------------------ee-ecCCCCcHHHHHHHHHh----cC-CCcEEEEcCChhhHHHHHHHHhhcC---CCceeEE
Q 010111 311 ------------------KL-ICESKLKPLYLVALLQS----LG-EEKCIVFTSSVESTHRLCTLLNHFG---ELRIKIK 363 (518)
Q Consensus 311 ------------------~~-~~~~~~k~~~l~~~l~~----~~-~~~~lVf~~s~~~~~~l~~~L~~~~---~~~~~v~ 363 (518)
.. ......|...|..++.. .. +.++||||+++..++.+++.|.... ..++.+.
T Consensus 355 ~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~ 434 (699)
T 4gl2_A 355 DRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAH 434 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CE
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceE
Confidence 00 00012333333334332 23 7899999999999999999998751 1248899
Q ss_pred Ecccc--------CChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcE
Q 010111 364 EYSGL--------QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 435 (518)
Q Consensus 364 ~~hg~--------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~ 435 (518)
.+||+ |++.+|.+++++|++|+++|||||+++++|||+|++++||+||+|+|+..|+||+||+||.| .+
T Consensus 435 ~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~ 511 (699)
T 4gl2_A 435 HLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE---ST 511 (699)
T ss_dssp ECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CE
T ss_pred EEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ce
Confidence 99999 99999999999999999999999999999999999999999999999999999999975543 55
Q ss_pred EEEeec
Q 010111 436 FTLLHK 441 (518)
Q Consensus 436 ~~~~~~ 441 (518)
++++.+
T Consensus 512 ~~l~~~ 517 (699)
T 4gl2_A 512 YVLVAH 517 (699)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 555544
No 40
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.1e-40 Score=368.18 Aligned_cols=330 Identities=17% Similarity=0.183 Sum_probs=246.2
Q ss_pred CCHHHHHHH-HhCCCCccchhhHHHHHHhhCCCCCCC--CEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcH
Q 010111 35 LDPRLKVAL-QNMGISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (518)
Q Consensus 35 l~~~~~~~l-~~~g~~~~~~~Q~~a~~~~~~~~~~~~--~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~ 111 (518)
.++...+.+ ..++| ++||+|.+|++.++..+..++ |+++++|||+|||++|+++++..+.. +.+++|++||+
T Consensus 588 ~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~----g~~vlvlvPt~ 662 (1151)
T 2eyq_A 588 HDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN----HKQVAVLVPTT 662 (1151)
T ss_dssp CCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT----TCEEEEECSSH
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh----CCeEEEEechH
Confidence 455555555 46788 579999999998886444455 99999999999999999998876654 34899999999
Q ss_pred HHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhc-CCCcEEEeCChHHHHhHhcC
Q 010111 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINAT 190 (518)
Q Consensus 112 ~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~ 190 (518)
+|+.|+++.+.+.+...++++..+.|..+....... +..+. ..++|+|+||+.+.
T Consensus 663 ~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~------------------~~~l~~g~~dIvV~T~~ll~------ 718 (1151)
T 2eyq_A 663 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQI------------------LAEVAEGKIDILIGTHKLLQ------ 718 (1151)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHH------------------HHHHHTTCCSEEEECTHHHH------
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHH------------------HHHHhcCCCCEEEECHHHHh------
Confidence 999999999999888778899998887765544221 12233 35899999998663
Q ss_pred CCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeE
Q 010111 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (518)
Q Consensus 191 ~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (518)
....+.++++||+||||++... ...++..+. ...+.+
T Consensus 719 ~~~~~~~l~lvIiDEaH~~g~~-----~~~~l~~l~--------------------------------------~~~~vl 755 (1151)
T 2eyq_A 719 SDVKFKDLGLLIVDEEHRFGVR-----HKERIKAMR--------------------------------------ANVDIL 755 (1151)
T ss_dssp SCCCCSSEEEEEEESGGGSCHH-----HHHHHHHHH--------------------------------------TTSEEE
T ss_pred CCccccccceEEEechHhcChH-----HHHHHHHhc--------------------------------------CCCCEE
Confidence 2356788999999999996332 222222221 122789
Q ss_pred EEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhc-CCCcEEEEcCChhhHHHHH
Q 010111 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLC 349 (518)
Q Consensus 271 ~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~lVf~~s~~~~~~l~ 349 (518)
++|||+.+.........+.++..+...... ...+..+.. ...+......+++.. .+++++|||++++.++.++
T Consensus 756 ~lSATp~p~~l~~~~~~~~~~~~i~~~~~~---r~~i~~~~~---~~~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~ 829 (1151)
T 2eyq_A 756 TLTATPIPRTLNMAMSGMRDLSIIATPPAR---RLAVKTFVR---EYDSMVVREAILREILRGGQVYYLYNDVENIQKAA 829 (1151)
T ss_dssp EEESSCCCHHHHHHHTTTSEEEECCCCCCB---CBCEEEEEE---ECCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHH
T ss_pred EEcCCCChhhHHHHHhcCCCceEEecCCCC---ccccEEEEe---cCCHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHH
Confidence 999998766555544444443332221111 111222222 122223333333332 4689999999999999999
Q ss_pred HHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCC-CCCccchhhhhhhccc
Q 010111 350 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK-PAYIKTYIHRAGRTAR 428 (518)
Q Consensus 350 ~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~-p~s~~~~~Qr~GR~gR 428 (518)
+.|+... .+..+..+||+|++.+|+++++.|++|+++|||||+++++|+|+|++++||+++. +.+...|+||+||+||
T Consensus 830 ~~L~~~~-p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR 908 (1151)
T 2eyq_A 830 ERLAELV-PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR 908 (1151)
T ss_dssp HHHHHHC-TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCB
T ss_pred HHHHHhC-CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCc
Confidence 9998762 2478999999999999999999999999999999999999999999999999988 4688899999999999
Q ss_pred CCCCCcEEEEeecch
Q 010111 429 AGQLGRCFTLLHKDE 443 (518)
Q Consensus 429 ~g~~g~~~~~~~~~e 443 (518)
.|+.|.|++++++.+
T Consensus 909 ~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 909 SHHQAYAWLLTPHPK 923 (1151)
T ss_dssp TTBCEEEEEEECCGG
T ss_pred CCCceEEEEEECCcc
Confidence 999999999987654
No 41
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2.1e-41 Score=351.33 Aligned_cols=315 Identities=13% Similarity=0.097 Sum_probs=231.7
Q ss_pred CCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHH
Q 010111 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (518)
Q Consensus 35 l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La 114 (518)
+++.+.+++... +..++|+|..+++ .+..++|++++||||||||++|++|+++.+.. .+.++||++||++||
T Consensus 157 ~~~~~~~~l~~~-~~~~lpiq~~~i~----~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~---~~~~vLvl~PtreLa 228 (618)
T 2whx_A 157 KSGDYVSAITQA-ERIGEPDYEVDED----IFRKKRLTIMDLHPGAGKTKRILPSIVREALK---RRLRTLILAPTRVVA 228 (618)
T ss_dssp -----CEECBCC-CCCCCCCCCCCGG----GGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---TTCCEEEEESSHHHH
T ss_pred chHHHHHHHhhc-cccCCCccccCHH----HHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh---CCCeEEEEcChHHHH
Confidence 566666655553 4788999987644 44469999999999999999999999988765 346899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCC
Q 010111 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (518)
Q Consensus 115 ~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 194 (518)
.|+.+.+.. ..+.. .+... . .....+..+.++|.+.+...+... ..
T Consensus 229 ~Qi~~~l~~------~~v~~-~~~~l-~------------------------~~~tp~~~i~~~t~~~l~~~l~~~--~~ 274 (618)
T 2whx_A 229 AEMEEALRG------LPIRY-QTPAV-K------------------------SDHTGREIVDLMCHATFTTRLLSS--TR 274 (618)
T ss_dssp HHHHHHTTT------SCEEE-CCTTS-S------------------------CCCCSSSCEEEEEHHHHHHHHHHC--SS
T ss_pred HHHHHHhcC------CceeE-ecccc-e------------------------eccCCCceEEEEChHHHHHHHhcc--cc
Confidence 999988762 23331 11110 0 001123467788888887766652 45
Q ss_pred CCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeE
Q 010111 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (518)
Q Consensus 195 ~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (518)
+.++++||+||||++ +.++...+..+...+.. +..|.+++||
T Consensus 275 l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~-------------------------------------~~~q~il~SA 316 (618)
T 2whx_A 275 VPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM-------------------------------------GEAAAIFMTA 316 (618)
T ss_dssp CCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHH-------------------------------------TSCEEEEECS
T ss_pred ccCCeEEEEECCCCC-CccHHHHHHHHHHHhcc-------------------------------------cCccEEEEEC
Confidence 788999999999998 77888778777766531 1238899999
Q ss_pred eecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhh
Q 010111 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 354 (518)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~ 354 (518)
|++.....+.. .++..+..... .+ . .+...+...+.. ..+++||||++++.++.+++.|..
T Consensus 317 T~~~~~~~~~~---~~~~~~~v~~~---~~-----------~-~~~~~ll~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~ 377 (618)
T 2whx_A 317 TPPGSTDPFPQ---SNSPIEDIERE---IP-----------E-RSWNTGFDWITD-YQGKTVWFVPSIKAGNDIANCLRK 377 (618)
T ss_dssp SCTTCCCSSCC---CSSCEEEEECC---CC-----------S-SCCSSSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHH
T ss_pred CCchhhhhhhc---cCCceeeeccc---CC-----------H-HHHHHHHHHHHh-CCCCEEEEECChhHHHHHHHHHHH
Confidence 99877654433 22322222211 00 0 011112223333 367999999999999999999998
Q ss_pred cCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEE--------------------EEcCCCC
Q 010111 355 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV--------------------VNYDKPA 414 (518)
Q Consensus 355 ~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~V--------------------I~~~~p~ 414 (518)
.+ +.+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++| |+++.|.
T Consensus 378 ~g---~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~ 449 (618)
T 2whx_A 378 SG---KRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPV 449 (618)
T ss_dssp TT---CCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEEC
T ss_pred cC---CcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccC
Confidence 75 889999984 688899999999999999999999999998 8888 7778899
Q ss_pred CccchhhhhhhcccCCC-CCcEEEEee---cchhHHHHHHHHHHHh
Q 010111 415 YIKTYIHRAGRTARAGQ-LGRCFTLLH---KDEVCLVKRFKKLLQK 456 (518)
Q Consensus 415 s~~~~~Qr~GR~gR~g~-~g~~~~~~~---~~e~~~~~~~~~~l~~ 456 (518)
+..+|+||+||+||.|. .|.+++|++ +.|...++.+++.+..
T Consensus 450 s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l 495 (618)
T 2whx_A 450 TPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLL 495 (618)
T ss_dssp CHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHH
T ss_pred CHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhcc
Confidence 99999999999999964 899999998 8888888888877644
No 42
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.9e-40 Score=342.17 Aligned_cols=311 Identities=18% Similarity=0.192 Sum_probs=225.5
Q ss_pred CccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcccc
Q 010111 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (518)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 128 (518)
.+|+|+|.+|++.++. ++++++++|||+|||+++++++...+... ..++||++||++|+.|+.+.+.++....
T Consensus 112 ~~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~---~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY---EGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp ECCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHC---SSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCC---CCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 3899999999998874 68999999999999999999988877643 3389999999999999999999987666
Q ss_pred CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhH
Q 010111 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (518)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (518)
+..+..++|+.+...+ +...++|+|+||+.+... ....+.++++||+||||+
T Consensus 185 ~~~v~~~~~~~~~~~~------------------------~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~ 236 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK------------------------YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHL 236 (510)
T ss_dssp GGGEEECGGGCCTTGG------------------------GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGG
T ss_pred ccceEEEecCCccccc------------------------cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcC
Confidence 6788888887653321 235689999999976442 234577899999999999
Q ss_pred hhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhh-cc
Q 010111 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-LD 287 (518)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~-~~ 287 (518)
+.+.. +..++..+. +..+.+++|||++........ ..
T Consensus 237 ~~~~~----~~~il~~~~--------------------------------------~~~~~l~lSATp~~~~~~~~~~~~ 274 (510)
T 2oca_A 237 ATGKS----ISSIISGLN--------------------------------------NCMFKFGLSGSLRDGKANIMQYVG 274 (510)
T ss_dssp CCHHH----HHHHGGGCT--------------------------------------TCCEEEEEESCGGGCSSCHHHHHH
T ss_pred CCccc----HHHHHHhcc--------------------------------------cCcEEEEEEeCCCCCcccHHHhHH
Confidence 87633 233333221 122678999999766433211 11
Q ss_pred CCCCeEEeeCCcc-----ccCcccccee---------------------eeecCCCCcHHHHHHHHHhc---CCCcEEEE
Q 010111 288 LHHPLFLTTGETR-----YKLPERLESY---------------------KLICESKLKPLYLVALLQSL---GEEKCIVF 338 (518)
Q Consensus 288 ~~~~~~~~~~~~~-----~~~~~~~~~~---------------------~~~~~~~~k~~~l~~~l~~~---~~~~~lVf 338 (518)
+..+......... ...+..+... ........+...+..++... ...++|||
T Consensus 275 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf 354 (510)
T 2oca_A 275 MFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMF 354 (510)
T ss_dssp HHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 1222222221110 0000000000 01111122333444544433 34456666
Q ss_pred cCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEc-CccccCCCCCCCCEEEEcCCCCCcc
Q 010111 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS-DAMTRGMDVEGVNNVVNYDKPAYIK 417 (518)
Q Consensus 339 ~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~GiDip~v~~VI~~~~p~s~~ 417 (518)
|+ +++++.+++.|...+ ..+..+||+++..+|.++++.|++|+.+||||| +++++|+|+|++++||+++.|.++.
T Consensus 355 ~~-~~~~~~l~~~L~~~~---~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~ 430 (510)
T 2oca_A 355 KH-VSHGKAIFDLIKNEY---DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKI 430 (510)
T ss_dssp SS-HHHHHHHHHHHHTTC---SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCC
T ss_pred ec-HHHHHHHHHHHHHcC---CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHH
Confidence 66 899999999999765 589999999999999999999999999999999 9999999999999999999999999
Q ss_pred chhhhhhhcccCCCCCcEEEEee
Q 010111 418 TYIHRAGRTARAGQLGRCFTLLH 440 (518)
Q Consensus 418 ~~~Qr~GR~gR~g~~g~~~~~~~ 440 (518)
.|+||+||+||.|+.|.++++++
T Consensus 431 ~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 431 IVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHHHHHHTTTCCCCCCEEEE
T ss_pred HHHHHHhcccccCCCCceEEEEE
Confidence 99999999999998775555554
No 43
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=2.6e-40 Score=337.76 Aligned_cols=294 Identities=25% Similarity=0.323 Sum_probs=218.6
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccC
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 129 (518)
+|+|+|.+|++.++. ++++++++|||+|||++|+.++... +.++||++|+++|+.||.+.+.++ +
T Consensus 93 ~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~-------~~~~Lvl~P~~~L~~Q~~~~~~~~----~ 157 (472)
T 2fwr_A 93 SLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWKERLGIF----G 157 (472)
T ss_dssp CBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH-------CSCEEEEESSHHHHHHHHHHGGGG----C
T ss_pred CcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEECCHHHHHHHHHHHHhC----C
Confidence 699999999988764 6789999999999999999988753 347999999999999999999884 6
Q ss_pred ce-EEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhH
Q 010111 130 LS-VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (518)
Q Consensus 130 ~~-v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (518)
++ +..+.|+.. ..++|+|+||+.+...+... ..++++||+||||+
T Consensus 158 ~~~v~~~~g~~~------------------------------~~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~ 203 (472)
T 2fwr_A 158 EEYVGEFSGRIK------------------------------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHH 203 (472)
T ss_dssp GGGEEEBSSSCB------------------------------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGG
T ss_pred CcceEEECCCcC------------------------------CcCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcC
Confidence 77 888888753 24699999999998766531 23589999999999
Q ss_pred hhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCC---------
Q 010111 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD--------- 279 (518)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~--------- 279 (518)
+.+..+.. +...++ ..+.+++|||+...
T Consensus 204 ~~~~~~~~----~~~~~~---------------------------------------~~~~l~lSATp~~~~~~~~~l~~ 240 (472)
T 2fwr_A 204 LPAESYVQ----IAQMSI---------------------------------------APFRLGLTATFEREDGRHEILKE 240 (472)
T ss_dssp TTSTTTHH----HHHTCC---------------------------------------CSEEEEEESCCCCTTSGGGSHHH
T ss_pred CCChHHHH----HHHhcC---------------------------------------CCeEEEEecCccCCCCHHHHHHH
Confidence 98766543 222221 12578899998632
Q ss_pred ----------hhhhhhccCCCCeEEe--eCCccc-----------------------cCcccccee--------------
Q 010111 280 ----------PNKLAQLDLHHPLFLT--TGETRY-----------------------KLPERLESY-------------- 310 (518)
Q Consensus 280 ----------~~~~~~~~~~~~~~~~--~~~~~~-----------------------~~~~~~~~~-------------- 310 (518)
...+....+..+.... ...... .....+..+
T Consensus 241 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (472)
T 2fwr_A 241 VVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEAL 320 (472)
T ss_dssp HTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTT
T ss_pred HhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHH
Confidence 1222111222221110 100000 000000000
Q ss_pred -------eeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhc
Q 010111 311 -------KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383 (518)
Q Consensus 311 -------~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~ 383 (518)
...+....|...+..++....++++||||++++.++.+++.|. +..+||+++..+|+++++.|++
T Consensus 321 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~--------~~~~~g~~~~~~R~~~~~~F~~ 392 (472)
T 2fwr_A 321 RAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL--------IPAITHRTSREEREEILEGFRT 392 (472)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT--------CCBCCSSSCSHHHHTHHHHHHH
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC--------cceeeCCCCHHHHHHHHHHHhC
Confidence 0112344566778888888778999999999999999999873 4579999999999999999999
Q ss_pred CCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCC-Cc--EEEEeecch
Q 010111 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL-GR--CFTLLHKDE 443 (518)
Q Consensus 384 g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~-g~--~~~~~~~~e 443 (518)
|+++|||||+++++|+|+|++++||+++.|+++..|+||+||+||.|+. +. ++.+++++.
T Consensus 393 g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 393 GRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp SSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred CCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999999854 34 444555443
No 44
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=4e-40 Score=332.22 Aligned_cols=288 Identities=15% Similarity=0.189 Sum_probs=209.5
Q ss_pred CCCccchhhHHHHHHhhCCCCCCCCE-EEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 47 GISSLFPVQVAVWQETIGPGLFERDL-CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 47 g~~~~~~~Q~~a~~~~~~~~~~~~~~-li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
|+.+++|+|. +++.++ .++++ +++||||||||++|++|++..+... +.++||++||++|+.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l----~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~---~~~~lvl~Ptr~La~Q~~~~l~--- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIF----RKKRLTIMDLHPGAGKTKRILPSIVREALLR---RLRTLILAPTRVVAAEMEEALR--- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGG----STTCEEEECCCTTSSCCTTHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHTT---
T ss_pred CCCCCCCcHH-HHHHHH----hcCCeEEEECCCCCCHhhHHHHHHHHHHHhc---CCcEEEECCCHHHHHHHHHHhc---
Confidence 7889999985 666655 46666 9999999999999999999876653 4589999999999999998875
Q ss_pred cccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEec
Q 010111 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205 (518)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE 205 (518)
+..+....+... .....+..|.++|++.+.+.+.+. ..+.++++||+||
T Consensus 70 ---g~~v~~~~~~~~--------------------------~~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDE 118 (451)
T 2jlq_A 70 ---GLPIRYQTPAVK--------------------------SDHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDE 118 (451)
T ss_dssp ---TSCEEECCTTCS--------------------------CCCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEET
T ss_pred ---Cceeeeeecccc--------------------------ccCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeC
Confidence 233322211110 011234579999999998888763 5578899999999
Q ss_pred hhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhh
Q 010111 206 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285 (518)
Q Consensus 206 ah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~ 285 (518)
||++ +..+......+...... +..+.+++|||++.......
T Consensus 119 ah~~-~~~~~~~~~~~~~~~~~-------------------------------------~~~~~i~~SAT~~~~~~~~~- 159 (451)
T 2jlq_A 119 AHFT-DPCSVAARGYISTRVEM-------------------------------------GEAAAIFMTATPPGSTDPFP- 159 (451)
T ss_dssp TTCC-SHHHHHHHHHHHHHHHT-------------------------------------TSCEEEEECSSCTTCCCSSC-
T ss_pred CccC-CcchHHHHHHHHHhhcC-------------------------------------CCceEEEEccCCCccchhhh-
Confidence 9977 44444333333222110 23488999999976544332
Q ss_pred ccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEc
Q 010111 286 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 365 (518)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~ 365 (518)
...+..+.... ..+. ..+ .. +...+... .+++||||++++.++.+++.|+..+ +.+..+
T Consensus 160 --~~~~~~~~~~~---~~p~--~~~------~~----~~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~g---~~~~~l 218 (451)
T 2jlq_A 160 --QSNSPIEDIER---EIPE--RSW------NT----GFDWITDY-QGKTVWFVPSIKAGNDIANCLRKSG---KRVIQL 218 (451)
T ss_dssp --CCSSCEEEEEC---CCCS--SCC------SS----SCHHHHHC-CSCEEEECSSHHHHHHHHHHHHTTT---CCEEEE
T ss_pred --cCCCceEecCc---cCCc--hhh------HH----HHHHHHhC-CCCEEEEcCCHHHHHHHHHHHHHcC---CeEEEC
Confidence 22333222211 1111 000 01 12223333 5699999999999999999998765 888999
Q ss_pred cccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcC--------------------CCCCccchhhhhhh
Q 010111 366 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD--------------------KPAYIKTYIHRAGR 425 (518)
Q Consensus 366 hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~--------------------~p~s~~~~~Qr~GR 425 (518)
||++. ..+++.|++|+.+|||||+++++|+|+|+ ++||++| .|.+..+|+||+||
T Consensus 219 h~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GR 293 (451)
T 2jlq_A 219 SRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGR 293 (451)
T ss_dssp CTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTT
T ss_pred CHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccc
Confidence 99764 57899999999999999999999999999 9999999 99999999999999
Q ss_pred cccCCC-CCcEEEEeec
Q 010111 426 TARAGQ-LGRCFTLLHK 441 (518)
Q Consensus 426 ~gR~g~-~g~~~~~~~~ 441 (518)
+||.|. .|.+++|+..
T Consensus 294 aGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 294 IGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp SSCCTTCCCEEEEECSC
T ss_pred cCCCCCCCccEEEEeCC
Confidence 999998 8888888743
No 45
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=8.2e-41 Score=335.61 Aligned_cols=282 Identities=15% Similarity=0.150 Sum_probs=196.2
Q ss_pred CCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHH
Q 010111 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145 (518)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 145 (518)
+..|+|++++||||||||++|++|+++.+... +.+++|++||++||.|+++.+..+ .+....+..
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~---~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~------ 69 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECARR---RLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAF------ 69 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCC------
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc---CCeEEEEcchHHHHHHHHHHHhcC------CeEEecccc------
Confidence 45799999999999999999999999877653 458999999999999999988743 222111110
Q ss_pred HHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcC-------CCCCCCcccEEEEechhHhhhHhHHhHH
Q 010111 146 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT-------RGFTLEHLCYLVVDETDRLLREAYQAWL 218 (518)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-------~~~~~~~~~~vViDEah~~~~~~~~~~~ 218 (518)
-.++||+++.+.+... ....+.++++||+||||++ +..+...+
T Consensus 70 -----------------------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~ 119 (440)
T 1yks_A 70 -----------------------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAAR 119 (440)
T ss_dssp -----------------------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHH
T ss_pred -----------------------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHH
Confidence 0366776554333220 1234788999999999998 54444333
Q ss_pred HHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCC
Q 010111 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (518)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 298 (518)
..+...... ...+.+++|||++.....+.... .+.....
T Consensus 120 ~~~~~~~~~-------------------------------------~~~~~l~~SAT~~~~~~~~~~~~--~~~~~~~-- 158 (440)
T 1yks_A 120 GWAAHRARA-------------------------------------NESATILMTATPPGTSDEFPHSN--GEIEDVQ-- 158 (440)
T ss_dssp HHHHHHHHT-------------------------------------TSCEEEEECSSCTTCCCSSCCCS--SCEEEEE--
T ss_pred HHHHHHhcc-------------------------------------CCceEEEEeCCCCchhhhhhhcC--CCeeEee--
Confidence 333332210 12388999999987755444321 1111100
Q ss_pred ccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHH
Q 010111 299 TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 378 (518)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~ 378 (518)
.......+.. +...+.. .++++||||++++.++.+++.|+..+ +.+..+|| .+|.+++
T Consensus 159 -------------~~~~~~~~~~-~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~~---~~v~~lhg----~~R~~~~ 216 (440)
T 1yks_A 159 -------------TDIPSEPWNT-GHDWILA-DKRPTAWFLPSIRAANVMAASLRKAG---KSVVVLNR----KTFEREY 216 (440)
T ss_dssp -------------CCCCSSCCSS-SCHHHHH-CCSCEEEECSCHHHHHHHHHHHHHTT---CCEEECCS----SSCC---
T ss_pred -------------eccChHHHHH-HHHHHHh-cCCCEEEEeCCHHHHHHHHHHHHHcC---CCEEEecc----hhHHHHH
Confidence 0011111111 1222222 26799999999999999999999865 89999999 4588999
Q ss_pred HHHhcCCceEEEEcCccccCCCCCCCCEEEE-------------------cCCCCCccchhhhhhhcccC-CCCCcEEEE
Q 010111 379 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVN-------------------YDKPAYIKTYIHRAGRTARA-GQLGRCFTL 438 (518)
Q Consensus 379 ~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~-------------------~~~p~s~~~~~Qr~GR~gR~-g~~g~~~~~ 438 (518)
+.|++|+++|||||+++++|||+| +++||+ ++.|.+..+|+||+||+||. |+.|.|++|
T Consensus 217 ~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l 295 (440)
T 1yks_A 217 PTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYY 295 (440)
T ss_dssp -----CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred hhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEE
Confidence 999999999999999999999999 999986 88899999999999999997 689999999
Q ss_pred e---ecchhHHHHHHHHHHHh
Q 010111 439 L---HKDEVCLVKRFKKLLQK 456 (518)
Q Consensus 439 ~---~~~e~~~~~~~~~~l~~ 456 (518)
+ ++.|...++.++..+..
T Consensus 296 ~~~~~~~~~~~l~~l~~~~~~ 316 (440)
T 1yks_A 296 SEPTSENNAHHVCWLEASMLL 316 (440)
T ss_dssp CSCCCCCCTTBHHHHHHHHHH
T ss_pred eccCChhhhhhhhhhhHHhcc
Confidence 6 67888778888776643
No 46
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2.6e-39 Score=343.96 Aligned_cols=330 Identities=18% Similarity=0.213 Sum_probs=237.1
Q ss_pred CCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhh-cccCCccEEEEcCcHH
Q 010111 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRD 112 (518)
Q Consensus 34 ~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~-~~~~~~~~lil~Pt~~ 112 (518)
++++.+.+.+...+ ..|++.|.++++.++. .+++++++||||||||+ ++|++-.... ....+.++++++|+++
T Consensus 78 ~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~---~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl~P~r~ 151 (773)
T 2xau_A 78 EFTPKYVDILKIRR-ELPVHAQRDEFLKLYQ---NNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACTQPRRV 151 (773)
T ss_dssp BCCHHHHHHHHHHT-TSGGGGGHHHHHHHHH---HCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEEESCHH
T ss_pred CCCHHHHHHHHHhh-cCChHHHHHHHHHHHh---CCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEecCchHH
Confidence 38999999999988 7899999999988775 46789999999999999 3555422111 1112457999999999
Q ss_pred HHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCC
Q 010111 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (518)
Q Consensus 113 La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~ 192 (518)
|+.|+++.+.... +..++..+|...... .......+|+++||+++.+.+...
T Consensus 152 La~q~~~~l~~~~---~~~v~~~vG~~i~~~-----------------------~~~~~~~~I~v~T~G~l~r~l~~~-- 203 (773)
T 2xau_A 152 AAMSVAQRVAEEM---DVKLGEEVGYSIRFE-----------------------NKTSNKTILKYMTDGMLLREAMED-- 203 (773)
T ss_dssp HHHHHHHHHHHHT---TCCBTTTEEEEETTE-----------------------EECCTTCSEEEEEHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHh---CCchhheecceeccc-----------------------cccCCCCCEEEECHHHHHHHHhhC--
Confidence 9999988665542 333322233211000 011245799999999999887762
Q ss_pred CCCCcccEEEEechhH-hhhHhH-HhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeE
Q 010111 193 FTLEHLCYLVVDETDR-LLREAY-QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (518)
Q Consensus 193 ~~~~~~~~vViDEah~-~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (518)
..+.++++||+||+|. .++..+ ...+..+.... +..+.+
T Consensus 204 ~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~---------------------------------------~~~~iI 244 (773)
T 2xau_A 204 HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR---------------------------------------PDLKII 244 (773)
T ss_dssp TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC---------------------------------------TTCEEE
T ss_pred ccccCCCEEEecCccccccchHHHHHHHHHHHHhC---------------------------------------CCceEE
Confidence 4588999999999995 555432 23333333221 123789
Q ss_pred EEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHH----HHHHHHHhcCCCcEEEEcCChhhHH
Q 010111 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPL----YLVALLQSLGEEKCIVFTSSVESTH 346 (518)
Q Consensus 271 ~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~----~l~~~l~~~~~~~~lVf~~s~~~~~ 346 (518)
++|||++ ...+.......+. +...... ..+..++.......... .+..+......+++||||+++..++
T Consensus 245 l~SAT~~--~~~l~~~~~~~~v-i~v~gr~----~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~ 317 (773)
T 2xau_A 245 IMSATLD--AEKFQRYFNDAPL-LAVPGRT----YPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIE 317 (773)
T ss_dssp EEESCSC--CHHHHHHTTSCCE-EECCCCC----CCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHH
T ss_pred EEecccc--HHHHHHHhcCCCc-ccccCcc----cceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHH
Confidence 9999994 3444443333333 3332221 12333433333333332 2333334446789999999999999
Q ss_pred HHHHHHhh--------cCCCceeEEEccccCChHHHHHHHHHHh-----cCCceEEEEcCccccCCCCCCCCEEEEcCC-
Q 010111 347 RLCTLLNH--------FGELRIKIKEYSGLQRQSVRSKTLKAFR-----EGKIQVLVSSDAMTRGMDVEGVNNVVNYDK- 412 (518)
Q Consensus 347 ~l~~~L~~--------~~~~~~~v~~~hg~~~~~~r~~~~~~f~-----~g~~~vLvaT~~~~~GiDip~v~~VI~~~~- 412 (518)
.+++.|.. ....++.+..+||++++.+|..+++.|+ +|..+|||||+++++|||+|++++||++++
T Consensus 318 ~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~ 397 (773)
T 2xau_A 318 DAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFS 397 (773)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEE
T ss_pred HHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCc
Confidence 99999974 1224588999999999999999999999 999999999999999999999999999887
Q ss_pred -----------------CCCccchhhhhhhcccCCCCCcEEEEeecchh
Q 010111 413 -----------------PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (518)
Q Consensus 413 -----------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~ 444 (518)
|.|...|+||+||+||. .+|.|+.|+++.+.
T Consensus 398 k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 398 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred cceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 88999999999999999 79999999987665
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.6e-39 Score=339.12 Aligned_cols=312 Identities=14% Similarity=0.164 Sum_probs=214.8
Q ss_pred HHHhCCCC-----ccchhhH-----HHHHHhh--CCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcC
Q 010111 42 ALQNMGIS-----SLFPVQV-----AVWQETI--GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (518)
Q Consensus 42 ~l~~~g~~-----~~~~~Q~-----~a~~~~~--~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~P 109 (518)
.+..+||. .|+++|. ++++.++ ..+..++|++++||||||||++|++|+++.+... +.++||++|
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~---~~~~lilaP 278 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK---RLRTAVLAP 278 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT---TCCEEEEES
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC---CCcEEEEcc
Confidence 44566777 9999999 7766544 1122689999999999999999999999887653 468999999
Q ss_pred cHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhc
Q 010111 110 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 189 (518)
Q Consensus 110 t~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~ 189 (518)
|++||.|+++.+..+ ++. ...+... .....+.-+-+.+.+.+...+..
T Consensus 279 Tr~La~Q~~~~l~~~----~i~--~~~~~l~--------------------------~v~tp~~ll~~l~~~~l~~~l~~ 326 (673)
T 2wv9_A 279 TRVVAAEMAEALRGL----PVR--YLTPAVQ--------------------------REHSGNEIVDVMCHATLTHRLMS 326 (673)
T ss_dssp SHHHHHHHHHHTTTS----CCE--ECCC-----------------------------CCCCSCCCEEEEEHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcC----Cee--eeccccc--------------------------ccCCHHHHHHHHHhhhhHHHHhc
Confidence 999999999888754 221 1111000 00001112334444444444443
Q ss_pred CCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceee
Q 010111 190 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269 (518)
Q Consensus 190 ~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (518)
...+.++++||+||||++ +..+...+..+...... ...+.
T Consensus 327 --~~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~-------------------------------------~~~~v 366 (673)
T 2wv9_A 327 --PLRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEA-------------------------------------GEAAA 366 (673)
T ss_dssp --SSCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHT-------------------------------------TSCEE
T ss_pred --ccccccceEEEEeCCccc-CccHHHHHHHHHHhccc-------------------------------------cCCcE
Confidence 245788999999999998 33322223333322210 12388
Q ss_pred EEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHH
Q 010111 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 349 (518)
Q Consensus 270 i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~ 349 (518)
++||||++..+..+... ..+... ... ......... ++..+.. ..+++||||++++.++.++
T Consensus 367 l~~SAT~~~~i~~~~~~--~~~i~~-v~~--------------~~~~~~~~~-~l~~l~~-~~~~~lVF~~s~~~~e~la 427 (673)
T 2wv9_A 367 IFMTATPPGTSDPFPDT--NSPVHD-VSS--------------EIPDRAWSS-GFEWITD-YAGKTVWFVASVKMSNEIA 427 (673)
T ss_dssp EEECSSCTTCCCSSCCC--SSCEEE-EEC--------------CCCSSCCSS-CCHHHHS-CCSCEEEECSSHHHHHHHH
T ss_pred EEEcCCCChhhhhhccc--CCceEE-Eee--------------ecCHHHHHH-HHHHHHh-CCCCEEEEECCHHHHHHHH
Confidence 99999998775544332 112111 100 001111111 1222222 4689999999999999999
Q ss_pred HHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEE--------------------
Q 010111 350 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN-------------------- 409 (518)
Q Consensus 350 ~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~-------------------- 409 (518)
+.|+..+ +.+..+||+ +|.++++.|++|+.+|||||+++++|||+| +++||+
T Consensus 428 ~~L~~~g---~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll 499 (673)
T 2wv9_A 428 QCLQRAG---KRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILS 499 (673)
T ss_dssp HHHHTTT---CCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEEC
T ss_pred HHHHhCC---CeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceec
Confidence 9999765 899999993 789999999999999999999999999999 999998
Q ss_pred cCCCCCccchhhhhhhcccC-CCCCcEEEEe---ecchhHHHHHHHHHHH
Q 010111 410 YDKPAYIKTYIHRAGRTARA-GQLGRCFTLL---HKDEVCLVKRFKKLLQ 455 (518)
Q Consensus 410 ~~~p~s~~~~~Qr~GR~gR~-g~~g~~~~~~---~~~e~~~~~~~~~~l~ 455 (518)
|+.|.+..+|+||+||+||. |+.|.|++|+ ++.|...++.++..+.
T Consensus 500 ~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~ 549 (673)
T 2wv9_A 500 VPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKIL 549 (673)
T ss_dssp CSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHH
T ss_pred ccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHh
Confidence 56899999999999999999 7899999996 5777777777766553
No 48
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=8e-39 Score=328.34 Aligned_cols=281 Identities=18% Similarity=0.251 Sum_probs=207.3
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccC
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 129 (518)
.++++|.++ ...+..+++++++||||||||.+|.+|+++ .+.++||++|||+||.|+++.+.+.. +
T Consensus 217 P~~~~q~~i----~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-------~g~~vLVl~PTReLA~Qia~~l~~~~---g 282 (666)
T 3o8b_A 217 PVFTDNSSP----PAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-------QGYKVLVLNPSVAATLGFGAYMSKAH---G 282 (666)
T ss_dssp CSCCCCCSC----CCCCSSCEEEEEECCTTSCTTTHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHHH---S
T ss_pred CcHHHHHHH----HHHHHcCCeEEEEeCCchhHHHHHHHHHHH-------CCCeEEEEcchHHHHHHHHHHHHHHh---C
Confidence 445556443 445556889999999999999999998885 24489999999999999998776543 4
Q ss_pred ceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHh
Q 010111 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (518)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~ 209 (518)
..+...+|+.. ...+++|+|+||++|+ .. ..+.++++++||+|||| +
T Consensus 283 ~~vg~~vG~~~----------------------------~~~~~~IlV~TPGrLl---~~-~~l~l~~l~~lVlDEAH-~ 329 (666)
T 3o8b_A 283 IDPNIRTGVRT----------------------------ITTGAPVTYSTYGKFL---AD-GGCSGGAYDIIICDECH-S 329 (666)
T ss_dssp CCCEEECSSCE----------------------------ECCCCSEEEEEHHHHH---HT-TSCCTTSCSEEEETTTT-C
T ss_pred CCeeEEECcEe----------------------------ccCCCCEEEECcHHHH---hC-CCcccCcccEEEEccch-h
Confidence 55666777643 2356899999999984 33 45678889999999996 6
Q ss_pred hhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCC
Q 010111 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289 (518)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~ 289 (518)
++.++...+..++..++.... ...+++|||++.... ..
T Consensus 330 l~~~~~~~l~~Il~~l~~~~~------------------------------------~llil~SAT~~~~i~------~~ 367 (666)
T 3o8b_A 330 TDSTTILGIGTVLDQAETAGA------------------------------------RLVVLATATPPGSVT------VP 367 (666)
T ss_dssp CSHHHHHHHHHHHHHTTTTTC------------------------------------SEEEEEESSCTTCCC------CC
T ss_pred cCccHHHHHHHHHHhhhhcCC------------------------------------ceEEEECCCCCcccc------cC
Confidence 688888888888877653221 135777999986432 11
Q ss_pred CCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccC
Q 010111 290 HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQ 369 (518)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~ 369 (518)
.+........ ....+... ..... +.....+++||||++++.++.+++.|+..+ +.+..+||++
T Consensus 368 ~p~i~~v~~~---~~~~i~~~----~~~~~-------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g---~~v~~lHG~l 430 (666)
T 3o8b_A 368 HPNIEEVALS---NTGEIPFY----GKAIP-------IEAIRGGRHLIFCHSKKKCDELAAKLSGLG---INAVAYYRGL 430 (666)
T ss_dssp CTTEEEEECB---SCSSEEET----TEEEC-------GGGSSSSEEEEECSCHHHHHHHHHHHHTTT---CCEEEECTTS
T ss_pred CcceEEEeec---ccchhHHH----Hhhhh-------hhhccCCcEEEEeCCHHHHHHHHHHHHhCC---CcEEEecCCC
Confidence 2211111110 00001100 00000 123357899999999999999999999765 8999999999
Q ss_pred ChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEE----------EcC-----------CCCCccchhhhhhhccc
Q 010111 370 RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV----------NYD-----------KPAYIKTYIHRAGRTAR 428 (518)
Q Consensus 370 ~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI----------~~~-----------~p~s~~~~~Qr~GR~gR 428 (518)
++.+ |.++..+|||||+++++|||+| +++|| ||| .|.+..+|+||+||+||
T Consensus 431 ~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR 502 (666)
T 3o8b_A 431 DVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR 502 (666)
T ss_dssp CGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS
T ss_pred CHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC
Confidence 9865 4566679999999999999997 99988 677 89999999999999999
Q ss_pred CCCCCcEEEEeecchhHH
Q 010111 429 AGQLGRCFTLLHKDEVCL 446 (518)
Q Consensus 429 ~g~~g~~~~~~~~~e~~~ 446 (518)
|+.|. +.|+++.|...
T Consensus 503 -g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 503 -GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp -SSCEE-EEESCCCCBCS
T ss_pred -CCCCE-EEEEecchhhc
Confidence 89999 99998877654
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=5.6e-39 Score=324.33 Aligned_cols=269 Identities=17% Similarity=0.214 Sum_probs=193.9
Q ss_pred CCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHH
Q 010111 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEIS 146 (518)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 146 (518)
..+++++++||||||||++|++|+++.+... +.++||++||++|+.|+++.+. +..+....+.....
T Consensus 19 ~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~---~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~~---- 85 (459)
T 2z83_A 19 RKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ---RLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQRE---- 85 (459)
T ss_dssp STTCEEEECCCTTSCTTTTHHHHHHHHHHHT---TCCEEEEECSHHHHHHHHHHTT------TSCEEECC----------
T ss_pred hcCCcEEEECCCCCCHHHHHHHHHHHHHHhC---CCcEEEECchHHHHHHHHHHhc------CceEeEEecccccC----
Confidence 3589999999999999999999999887653 4589999999999999998886 33333222211100
Q ss_pred HhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhH-----hhhHhHHhHHHHH
Q 010111 147 ELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR-----LLREAYQAWLPTV 221 (518)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~-----~~~~~~~~~~~~i 221 (518)
-..+..+.++|.+.+...+... ..+.++++||+||||+ ++..++....
T Consensus 86 ----------------------~t~~~~i~~~~~~~l~~~l~~~--~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~--- 138 (459)
T 2z83_A 86 ----------------------HQGNEIVDVMCHATLTHRLMSP--NRVPNYNLFVMDEAHFTDPASIAARGYIATK--- 138 (459)
T ss_dssp ------------------------CCCSEEEEEHHHHHHHHHSC--C-CCCCSEEEESSTTCCSHHHHHHHHHHHHH---
T ss_pred ----------------------CCCCcEEEEEchHHHHHHhhcc--ccccCCcEEEEECCccCCchhhHHHHHHHHH---
Confidence 0123457788988887777652 5678999999999998 4444332211
Q ss_pred HHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccc
Q 010111 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 301 (518)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (518)
. .. +..+.+++|||++.....+... ..|......
T Consensus 139 ~---~~-------------------------------------~~~~~il~SAT~~~~~~~~~~~--~~pi~~~~~---- 172 (459)
T 2z83_A 139 V---EL-------------------------------------GEAAAIFMTATPPGTTDPFPDS--NAPIHDLQD---- 172 (459)
T ss_dssp H---HT-------------------------------------TSCEEEEECSSCTTCCCSSCCC--SSCEEEEEC----
T ss_pred h---cc-------------------------------------CCccEEEEEcCCCcchhhhccC--CCCeEEecc----
Confidence 1 00 2238899999998775444332 233322110
Q ss_pred cCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHH
Q 010111 302 KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381 (518)
Q Consensus 302 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f 381 (518)
..+ ..+...+...+... .+++||||+++..++.+++.|+..+ +.+..+||+ +|..+++.|
T Consensus 173 ~~~------------~~~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~g---~~v~~lh~~----~R~~~~~~f 232 (459)
T 2z83_A 173 EIP------------DRAWSSGYEWITEY-AGKTVWFVASVKMGNEIAMCLQRAG---KKVIQLNRK----SYDTEYPKC 232 (459)
T ss_dssp CCC------------SSCCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHHHHHTT---CCEEEESTT----CCCCCGGGS
T ss_pred cCC------------cchhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHHHHhcC---CcEEecCHH----HHHHHHhhc
Confidence 000 00001112233333 6799999999999999999999875 889999984 678899999
Q ss_pred hcCCceEEEEcCccccCCCCCCCCEEEE--------------------cCCCCCccchhhhhhhcccCCC-CCcEEEEee
Q 010111 382 REGKIQVLVSSDAMTRGMDVEGVNNVVN--------------------YDKPAYIKTYIHRAGRTARAGQ-LGRCFTLLH 440 (518)
Q Consensus 382 ~~g~~~vLvaT~~~~~GiDip~v~~VI~--------------------~~~p~s~~~~~Qr~GR~gR~g~-~g~~~~~~~ 440 (518)
++|+.+|||||+++++|+|+|+ ++||+ |+.|.|..+|+||+||+||.|. .|.+++|++
T Consensus 233 ~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~ 311 (459)
T 2z83_A 233 KNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGG 311 (459)
T ss_dssp SSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred cCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEc
Confidence 9999999999999999999999 99999 7799999999999999999997 999999998
Q ss_pred cc
Q 010111 441 KD 442 (518)
Q Consensus 441 ~~ 442 (518)
+.
T Consensus 312 ~~ 313 (459)
T 2z83_A 312 AT 313 (459)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 50
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=5.3e-37 Score=307.38 Aligned_cols=269 Identities=13% Similarity=0.143 Sum_probs=191.7
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHh
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 148 (518)
|++++++||||||||++|++|+++.+... +.+++|++||++|+.|+++.+. +..+....|+....
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~---g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~~------ 66 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKK---RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQSE------ 66 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHTT------TSCEEEC-------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhC---CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCcccc------
Confidence 78999999999999999999999766543 4589999999999999988775 45555555542210
Q ss_pred hcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccc
Q 010111 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 228 (518)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~ 228 (518)
...+..+.+.|.+.+...+.. ...+.++++||+||||++ +..+......+......
T Consensus 67 --------------------~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~- 122 (431)
T 2v6i_A 67 --------------------RTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSM- 122 (431)
T ss_dssp ----------------------CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHT-
T ss_pred --------------------CCCCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhC-
Confidence 112345677888888766665 345788999999999997 54444444444433210
Q ss_pred cccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccc
Q 010111 229 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE 308 (518)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (518)
+..+.+++|||+++....+... ..|.. ....
T Consensus 123 ------------------------------------~~~~~l~~SAT~~~~~~~~~~~--~~~i~-~~~~---------- 153 (431)
T 2v6i_A 123 ------------------------------------GDAGAIFMTATPPGTTEAFPPS--NSPII-DEET---------- 153 (431)
T ss_dssp ------------------------------------TSCEEEEEESSCTTCCCSSCCC--SSCCE-EEEC----------
T ss_pred ------------------------------------CCCcEEEEeCCCCcchhhhcCC--CCcee-eccc----------
Confidence 1238899999998765433321 11111 1100
Q ss_pred eeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceE
Q 010111 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388 (518)
Q Consensus 309 ~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~v 388 (518)
... ..+...+...+... ++++||||++++.++.+++.|+..+ +.+..+||+ +|.++++.|++|+.+|
T Consensus 154 ----~~~-~~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~---~~v~~lhg~----~r~~~~~~f~~g~~~v 220 (431)
T 2v6i_A 154 ----RIP-DKAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAG---KKVLYLNRK----TFESEYPKCKSEKWDF 220 (431)
T ss_dssp ----CCC-SSCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTT---CCEEEESTT----THHHHTTHHHHSCCSE
T ss_pred ----cCC-HHHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcC---CeEEEeCCc----cHHHHHHhhcCCCCeE
Confidence 000 11111223334433 5789999999999999999999864 899999997 5788999999999999
Q ss_pred EEEcCccccCCCCCCCCE-----------------EEEcCCCCCccchhhhhhhcccCCC-CCcEEEEe
Q 010111 389 LVSSDAMTRGMDVEGVNN-----------------VVNYDKPAYIKTYIHRAGRTARAGQ-LGRCFTLL 439 (518)
Q Consensus 389 LvaT~~~~~GiDip~v~~-----------------VI~~~~p~s~~~~~Qr~GR~gR~g~-~g~~~~~~ 439 (518)
||||+++++|+|+| +.. ||+++.|.+..+|+||+||+||.|. .|.++++.
T Consensus 221 LVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 221 VITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred EEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 99999999999999 655 6788899999999999999999985 45556555
No 51
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=9.8e-37 Score=332.79 Aligned_cols=342 Identities=17% Similarity=0.141 Sum_probs=228.0
Q ss_pred CccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcccc
Q 010111 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (518)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 128 (518)
.+|+|+|.+++..++.. .+.+++++++||+|||++++..+...+..+ ...++||+||+ .|+.||.+++.+.+
T Consensus 152 ~~LrpyQ~eav~~~l~~--~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g--~~~rvLIVvP~-sLl~Qw~~E~~~~f--- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRR--HAPRVLLADEVGLGKTIEAGMILHQQLLSG--AAERVLIIVPE-TLQHQWLVEMLRRF--- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHS--SSCEEEECCCTTSCHHHHHHHHHHHHHHTS--SCCCEEEECCT-TTHHHHHHHHHHHS---
T ss_pred CCCcHHHHHHHHHHHHh--cCCCEEEECCCCCcHHHHHHHHHHHHHHhC--CCCeEEEEeCH-HHHHHHHHHHHHHh---
Confidence 37999999999887753 256899999999999999888777666544 33479999999 99999999997664
Q ss_pred CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhH
Q 010111 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (518)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (518)
++++.++.|+........ ........+|+|+|++.+.........+...++++||+||||+
T Consensus 224 ~l~v~v~~~~~~~~~~~~-------------------~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~ 284 (968)
T 3dmq_A 224 NLRFALFDDERYAEAQHD-------------------AYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHH 284 (968)
T ss_dssp CCCCEECCHHHHHHHHHT-------------------TCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSC
T ss_pred CCCEEEEccchhhhhhhh-------------------cccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHh
Confidence 566666655432221100 0011235799999999886532221223355789999999999
Q ss_pred hhhHhHHh-HHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCC-hh-----
Q 010111 209 LLREAYQA-WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD-PN----- 281 (518)
Q Consensus 209 ~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~-~~----- 281 (518)
+.+.+... .....+..+..... +.+++|||+..+ ..
T Consensus 285 ~kn~~~~~s~~~~~l~~L~~~~~-------------------------------------~~L~LTATPi~n~~~el~sl 327 (968)
T 3dmq_A 285 LVWSEDAPSREYQAIEQLAEHVP-------------------------------------GVLLLTATPEQLGMESHFAR 327 (968)
T ss_dssp CCCBTTBCCHHHHHHHHHHTTCS-------------------------------------SEEESCSSCSSSCSSCTHHH
T ss_pred hcCCCCcchHHHHHHHHHhhcCC-------------------------------------cEEEEEcCCccCCHHHHHHH
Confidence 86543221 11111211111111 122233332110 00
Q ss_pred ------------------------------------------------------------------------------hh
Q 010111 282 ------------------------------------------------------------------------------KL 283 (518)
Q Consensus 282 ------------------------------------------------------------------------------~~ 283 (518)
.+
T Consensus 328 l~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~l 407 (968)
T 3dmq_A 328 LRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSML 407 (968)
T ss_dssp HHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHH
T ss_pred HHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHH
Confidence 00
Q ss_pred hhccCCCCeEEeeCC-ccccCccc-cc---------------------------------------------eeeeecCC
Q 010111 284 AQLDLHHPLFLTTGE-TRYKLPER-LE---------------------------------------------SYKLICES 316 (518)
Q Consensus 284 ~~~~~~~~~~~~~~~-~~~~~~~~-~~---------------------------------------------~~~~~~~~ 316 (518)
..........+.... .....+.. .. .....+..
T Consensus 408 ld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~ 487 (968)
T 3dmq_A 408 MDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNF 487 (968)
T ss_dssp GGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTT
T ss_pred HHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCc
Confidence 000000000000000 00000000 00 00012334
Q ss_pred CCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCC--ceEEEEcCc
Q 010111 317 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK--IQVLVSSDA 394 (518)
Q Consensus 317 ~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~--~~vLvaT~~ 394 (518)
..|...+..++....+.++||||+++..++.+++.|... .++.+..+||+|++.+|..+++.|++|+ ++|||||++
T Consensus 488 ~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~--~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v 565 (968)
T 3dmq_A 488 DPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRER--EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEI 565 (968)
T ss_dssp SHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTT--TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCC
T ss_pred cHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHH--cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecch
Confidence 567888888888878899999999999999999999852 1389999999999999999999999998 999999999
Q ss_pred cccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHHh
Q 010111 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQK 456 (518)
Q Consensus 395 ~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~ 456 (518)
+++|+|+|++++||+||+|+++..|+||+||+||.|+.|.++++....+....+.+.+.+.+
T Consensus 566 ~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~ 627 (968)
T 3dmq_A 566 GSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHE 627 (968)
T ss_dssp TTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHH
T ss_pred hhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999987777655444444666666644
No 52
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=5.4e-37 Score=321.45 Aligned_cols=318 Identities=17% Similarity=0.169 Sum_probs=189.8
Q ss_pred ccchhhHHHHHHhhCCCCCC-CCEEEECCCCchHHHHhHHHHHHHhhhc-----ccCCccEEEEcCcHHHHHHHH-HHHH
Q 010111 50 SLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRDLALQVK-DVFA 122 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~-~~~li~apTGsGKT~~~~l~~~~~l~~~-----~~~~~~~lil~Pt~~La~Q~~-~~~~ 122 (518)
.|+++|.+|++.++..+..+ +++++++|||+|||++++..+...+..+ ...+.++||++||++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 79999999999887654445 5689999999999999665444433322 014568999999999999998 7777
Q ss_pred HhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcC---CCCCCCccc
Q 010111 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT---RGFTLEHLC 199 (518)
Q Consensus 123 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~---~~~~~~~~~ 199 (518)
.+. ..+..+.++. ...+.+|+|+||++|....... ..+...+++
T Consensus 258 ~~~----~~~~~~~~~~-----------------------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~ 304 (590)
T 3h1t_A 258 PFG----DARHKIEGGK-----------------------------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFD 304 (590)
T ss_dssp TTC----SSEEECCC-------------------------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCS
T ss_pred hcc----hhhhhhhccC-----------------------------CCCCCcEEEEEhhhhccccccccccccCCCCccC
Confidence 653 3333333321 2346799999999998875421 124567799
Q ss_pred EEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCC
Q 010111 200 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279 (518)
Q Consensus 200 ~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~ 279 (518)
+||+||||++..... ..+..++..++ ..+.+++|||+...
T Consensus 305 lvIiDEaH~~~~~~~-~~~~~il~~~~---------------------------------------~~~~l~lTATP~~~ 344 (590)
T 3h1t_A 305 LIIIDECHRGSARDN-SNWREILEYFE---------------------------------------PAFQIGMTATPLRE 344 (590)
T ss_dssp EEEESCCC----------CHHHHHHST---------------------------------------TSEEEEEESSCSCT
T ss_pred EEEEECCccccccch-HHHHHHHHhCC---------------------------------------cceEEEeccccccc
Confidence 999999999866432 22334444332 12679999998754
Q ss_pred hhhhhhccCCCCeEEeeCCc----cccCccccceeee--------------------------ecCC-------CCcHHH
Q 010111 280 PNKLAQLDLHHPLFLTTGET----RYKLPERLESYKL--------------------------ICES-------KLKPLY 322 (518)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--------------------------~~~~-------~~k~~~ 322 (518)
........+..+........ ....+..+..... .... ..+...
T Consensus 345 ~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 424 (590)
T 3h1t_A 345 DNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDA 424 (590)
T ss_dssp TTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHH
T ss_pred cchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHH
Confidence 33222222222211100000 0000000000000 0000 001111
Q ss_pred ----HHHHHHh-cCCCcEEEEcCChhhHHHHHHHHhhcCC-----CceeEEEccccCChHHHHHHHHHHhcCCce---EE
Q 010111 323 ----LVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGE-----LRIKIKEYSGLQRQSVRSKTLKAFREGKIQ---VL 389 (518)
Q Consensus 323 ----l~~~l~~-~~~~~~lVf~~s~~~~~~l~~~L~~~~~-----~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~---vL 389 (518)
+...++. ...+++||||+++.+|+.+++.|...+. ....+..+||+++. +|++++++|++|+.+ ||
T Consensus 425 i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~il 503 (590)
T 3h1t_A 425 FAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVIL 503 (590)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEE
T ss_pred HHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEE
Confidence 2223333 2457999999999999999999987541 11237789998864 799999999998866 88
Q ss_pred EEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCC--CCcEEEEeec
Q 010111 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ--LGRCFTLLHK 441 (518)
Q Consensus 390 vaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~--~g~~~~~~~~ 441 (518)
|||+++++|+|+|++++||++++|.|...|+||+||+||.+. .+..+++++.
T Consensus 504 vtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~ 557 (590)
T 3h1t_A 504 TTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDY 557 (590)
T ss_dssp EESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEEC
T ss_pred EECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEec
Confidence 999999999999999999999999999999999999999875 3344444443
No 53
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=3.3e-35 Score=305.53 Aligned_cols=283 Identities=16% Similarity=0.162 Sum_probs=199.2
Q ss_pred CCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHH
Q 010111 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEIS 146 (518)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 146 (518)
+.+++++++||||||||.. ++..+... ...+|++|||+||.|+++.+... ++++..++|+.....
T Consensus 153 l~rk~vlv~apTGSGKT~~----al~~l~~~----~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv--- 217 (677)
T 3rc3_A 153 MQRKIIFHSGPTNSGKTYH----AIQKYFSA----KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTV--- 217 (677)
T ss_dssp SCCEEEEEECCTTSSHHHH----HHHHHHHS----SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECC---
T ss_pred cCCCEEEEEcCCCCCHHHH----HHHHHHhc----CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEe---
Confidence 3689999999999999984 44444443 24599999999999999998886 778888888864300
Q ss_pred HhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcc
Q 010111 147 ELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226 (518)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~ 226 (518)
. .-....+++++|++.+. ....+++||+||||++++.+++..+..++..+.
T Consensus 218 ---~-----------------TpGr~~~il~~T~e~~~---------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~ 268 (677)
T 3rc3_A 218 ---Q-----------------PNGKQASHVSCTVEMCS---------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLC 268 (677)
T ss_dssp ---S-----------------TTCCCCSEEEEEGGGCC---------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCC
T ss_pred ---c-----------------CCCcccceeEecHhHhh---------hcccCCEEEEecceecCCccchHHHHHHHHccC
Confidence 0 00123577888875531 245689999999999999888888777776553
Q ss_pred cccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccc
Q 010111 227 SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 306 (518)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (518)
. ..++.+++|||.+ ....+.... .....+..... ..+..
T Consensus 269 ~-------------------------------------~~i~il~~SAT~~-~i~~l~~~~-~~~~~v~~~~r--~~~l~ 307 (677)
T 3rc3_A 269 A-------------------------------------EEVHLCGEPAAID-LVMELMYTT-GEEVEVRDYKR--LTPIS 307 (677)
T ss_dssp E-------------------------------------EEEEEEECGGGHH-HHHHHHHHH-TCCEEEEECCC--SSCEE
T ss_pred c-------------------------------------cceEEEeccchHH-HHHHHHHhc-CCceEEEEeee--cchHH
Confidence 1 1237788888852 222222221 12222211100 00000
Q ss_pred cceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhc--C
Q 010111 307 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE--G 384 (518)
Q Consensus 307 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~--g 384 (518)
.....-. .+... ..+.+|||++++.++.+++.|...+ +.+..+||+|++.+|.++++.|++ |
T Consensus 308 -----~~~~~l~-------~l~~~-~~g~iIf~~s~~~ie~la~~L~~~g---~~v~~lHG~L~~~~R~~~~~~F~~~~g 371 (677)
T 3rc3_A 308 -----VLDHALE-------SLDNL-RPGDCIVCFSKNDIYSVSRQIEIRG---LESAVIYGSLPPGTKLAQAKKFNDPND 371 (677)
T ss_dssp -----ECSSCCC-------SGGGC-CTTEEEECSSHHHHHHHHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHCTTS
T ss_pred -----HHHHHHH-------HHHhc-CCCCEEEEcCHHHHHHHHHHHHhcC---CCeeeeeccCCHHHHHHHHHHHHccCC
Confidence 0000000 11122 3456899999999999999999865 899999999999999999999999 8
Q ss_pred CceEEEEcCccccCCCCCCCCEEEEcCC--------------CCCccchhhhhhhcccCCCC---CcEEEEeecchhHHH
Q 010111 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDK--------------PAYIKTYIHRAGRTARAGQL---GRCFTLLHKDEVCLV 447 (518)
Q Consensus 385 ~~~vLvaT~~~~~GiDip~v~~VI~~~~--------------p~s~~~~~Qr~GR~gR~g~~---g~~~~~~~~~e~~~~ 447 (518)
..+|||||+++++|||+ ++++||+++. |.+..+|+||+||+||.|.. |.|+ ++.+.+.
T Consensus 372 ~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~-~l~~~d~--- 446 (677)
T 3rc3_A 372 PCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVT-TMNHEDL--- 446 (677)
T ss_dssp SCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEE-ESSTTHH---
T ss_pred CeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEE-EEecchH---
Confidence 89999999999999999 8999999998 77899999999999999965 4444 4444554
Q ss_pred HHHHHHHH
Q 010111 448 KRFKKLLQ 455 (518)
Q Consensus 448 ~~~~~~l~ 455 (518)
..+.+++.
T Consensus 447 ~~~~~~~~ 454 (677)
T 3rc3_A 447 SLLKEILK 454 (677)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 33444444
No 54
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=2.1e-33 Score=283.39 Aligned_cols=392 Identities=18% Similarity=0.197 Sum_probs=246.5
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
+|. .|+++|.-..-.+. .|+ +..+.||+|||+++.+|++-+... +..+.|++|+..||.|-++++..+.
T Consensus 72 lg~-r~~dvQligg~~L~----~G~--iaEM~TGEGKTLva~lp~~lnAL~----G~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALH----EGK--VAEMKTGEGKTLAATMPIYLNALI----GKGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp TSC-CCCHHHHHHHHHHH----TTC--EEECCTTSCHHHHTHHHHHHHHTT----SSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHh----CCC--hhhccCCCCccHHHHHHHHHHHhc----CCceEEEeccHHHHHhHHHHHHHHH
Confidence 676 78999987755443 244 999999999999999999855443 3369999999999999999999999
Q ss_pred cccCceEEEeecCCc-----------hHHHHHH-hhcCCccccCcc---------------CCchhHHHhhcCCCcEEEe
Q 010111 126 PAVGLSVGLAVGQSS-----------IADEISE-LIKRPKLEAGIC---------------YDPEDVLQELQSAVDILVA 178 (518)
Q Consensus 126 ~~~~~~v~~~~g~~~-----------~~~~~~~-~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~Iiv~ 178 (518)
..+|+++++++.... ..+...+ +.-.|....+.. ++.....++....|||+++
T Consensus 141 ~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYg 220 (822)
T 3jux_A 141 LFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYG 220 (822)
T ss_dssp HHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEE
T ss_pred HHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEc
Confidence 999999999987310 0000000 000011000000 0001111223345899999
Q ss_pred CChHH-HHhHhcCC-----CCCCCcccEEEEechhHhhhH----------------hHHhHHHHHHHhccccc-------
Q 010111 179 TPGRL-MDHINATR-----GFTLEHLCYLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDN------- 229 (518)
Q Consensus 179 Tp~~l-~~~l~~~~-----~~~~~~~~~vViDEah~~~~~----------------~~~~~~~~i~~~~~~~~------- 229 (518)
|..-| .++|..+- ..-...+.+.|+||+|.++=+ ..+..+..+...+....
T Consensus 221 Tn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek 300 (822)
T 3jux_A 221 TNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEK 300 (822)
T ss_dssp EHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCS
T ss_pred cCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcc
Confidence 98776 34544321 123466889999999977421 11112222222221100
Q ss_pred --------------------ccccCCccccc-ccccccchhhh--------------------cccc---ccCC------
Q 010111 230 --------------------ENRFSDASTFL-PSAFGSLKTIR--------------------RCGV---ERGF------ 259 (518)
Q Consensus 230 --------------------~~~~~~~~~~~-~~~~~~~~~~~--------------------~~~~---~~~~------ 259 (518)
.+.+......+ ......+.... .++. .+.+
T Consensus 301 ~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQ 380 (822)
T 3jux_A 301 ARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQ 380 (822)
T ss_dssp SSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHH
T ss_pred cCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHH
Confidence 00000000000 00000000000 0000 0000
Q ss_pred --------C----------------CCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCccccCccccceeeeecC
Q 010111 260 --------K----------------DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE 315 (518)
Q Consensus 260 --------~----------------~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (518)
. -..|+ +...||+|......++...+... ++.++... +....-....+...
T Consensus 381 aiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~--kL~GMTGTa~te~~Ef~~iY~l~--vv~IPtnk-p~~R~d~~d~vy~t 455 (822)
T 3jux_A 381 AIEAKEGVPIKEESITYATITFQNYFRMYE--KLAGMTGTAKTEESEFVQVYGME--VVVIPTHK-PMIRKDHDDLVFRT 455 (822)
T ss_dssp HHHHHHSSCCCCCCCEEEEECHHHHHTTSS--EEEEEESSCGGGHHHHHHHSCCC--EEECCCSS-CCCCEECCCEEESS
T ss_pred HHHHHcCCCCCCCcchhHHHHHHHHHHHhh--HHeEECCCCchHHHHHHHHhCCe--EEEECCCC-CcceeecCcEEEec
Confidence 0 00011 46889999987777666655433 23332211 11111122234456
Q ss_pred CCCcHHHHHHHHHhc--CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcC
Q 010111 316 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393 (518)
Q Consensus 316 ~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~ 393 (518)
...|...+...+... .+.++||||+|+..++.+++.|...+ +++..+||+..+.++..+.++++.| .|+|||+
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~G---i~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATd 530 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKG---IPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATN 530 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTT---CCCEEECSCHHHHHHHHHHHHHSTT--CEEEEET
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCC---CCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcc
Confidence 667888888877653 46799999999999999999999876 8999999997777776667777666 6999999
Q ss_pred ccccCCCCC--------CCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchhHH----HHHHHHHHHhhc
Q 010111 394 AMTRGMDVE--------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCL----VKRFKKLLQKAD 458 (518)
Q Consensus 394 ~~~~GiDip--------~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~----~~~~~~~l~~~~ 458 (518)
+++||+||+ +..+||+++.|.|...|+||+|||||+|.+|.+++|++.+|... -+++..+++...
T Consensus 531 mAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~ 607 (822)
T 3jux_A 531 MAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILK 607 (822)
T ss_dssp TTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHSS
T ss_pred hhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHcC
Confidence 999999998 66799999999999999999999999999999999999888433 246677776654
No 55
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=2.1e-34 Score=296.29 Aligned_cols=326 Identities=16% Similarity=0.226 Sum_probs=215.4
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccC
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 129 (518)
.|+|+|.+++..+......++++++.++||+|||++++..+.. +... ....++||+||+ .|+.||.++++++++ +
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~-~~~~-~~~~~~LIv~P~-~l~~qw~~e~~~~~~--~ 111 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSD-AKKE-NELTPSLVICPL-SVLKNWEEELSKFAP--H 111 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHH-HHHT-TCCSSEEEEECS-TTHHHHHHHHHHHCT--T
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHH-HHhc-CCCCCEEEEccH-HHHHHHHHHHHHHCC--C
Confidence 7999999998766432235789999999999999997654444 4332 234579999995 689999999999976 4
Q ss_pred ceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHh
Q 010111 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (518)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~ 209 (518)
.++..+.|+... .....++|+|+||+++.+... +....+++||+||||++
T Consensus 112 ~~v~~~~g~~~~--------------------------~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~ 161 (500)
T 1z63_A 112 LRFAVFHEDRSK--------------------------IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNI 161 (500)
T ss_dssp SCEEECSSSTTS--------------------------CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGG
T ss_pred ceEEEEecCchh--------------------------ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCcccc
Confidence 566666665421 012346999999999865432 22346899999999998
Q ss_pred hhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCCh-hhhhh---
Q 010111 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP-NKLAQ--- 285 (518)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~-~~~~~--- 285 (518)
.+... .....+..+. ....+++|||+..+. .++..
T Consensus 162 kn~~~--~~~~~l~~l~---------------------------------------~~~~l~LTaTP~~n~~~el~~ll~ 200 (500)
T 1z63_A 162 KNPQT--KIFKAVKELK---------------------------------------SKYRIALTGTPIENKVDDLWSIMT 200 (500)
T ss_dssp SCTTS--HHHHHHHTSC---------------------------------------EEEEEEECSSCSTTCHHHHHHHHH
T ss_pred CCHhH--HHHHHHHhhc---------------------------------------cCcEEEEecCCCCCCHHHHHHHHH
Confidence 65431 1112222111 114588888875431 11100
Q ss_pred --------------------------------ccCCCCeEEeeCCcc----ccCccccceeee-----------------
Q 010111 286 --------------------------------LDLHHPLFLTTGETR----YKLPERLESYKL----------------- 312 (518)
Q Consensus 286 --------------------------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~----------------- 312 (518)
..+..|..+...... ..+|........
T Consensus 201 ~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~ 280 (500)
T 1z63_A 201 FLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVEN 280 (500)
T ss_dssp HHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHH
T ss_pred HhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHH
Confidence 000011111110000 011111100000
Q ss_pred ---------------------------------------ecCCCCcHHHHHHHHHhc--CCCcEEEEcCChhhHHHHHHH
Q 010111 313 ---------------------------------------ICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTL 351 (518)
Q Consensus 313 ---------------------------------------~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~ 351 (518)
......|...+..++... .+.++||||+++..++.+.+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~ 360 (500)
T 1z63_A 281 LFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNI 360 (500)
T ss_dssp HTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHH
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHH
Confidence 011234555566666543 577999999999999999999
Q ss_pred Hhhc-CCCceeEEEccccCChHHHHHHHHHHhcC-Cce-EEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhccc
Q 010111 352 LNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQ-VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428 (518)
Q Consensus 352 L~~~-~~~~~~v~~~hg~~~~~~r~~~~~~f~~g-~~~-vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR 428 (518)
|... + +.+..+||+++..+|.+++++|++| ..+ +|++|+++++|+|+|.+++||++|+|+++..|.||+||++|
T Consensus 361 l~~~~~---~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R 437 (500)
T 1z63_A 361 IEKELN---TEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYR 437 (500)
T ss_dssp HHHHHT---CCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTT
T ss_pred HHHhhC---CCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHH
Confidence 9874 4 7889999999999999999999998 565 79999999999999999999999999999999999999999
Q ss_pred CCCCCcE--EEEeecchhHHHHHHHHHHHh
Q 010111 429 AGQLGRC--FTLLHKDEVCLVKRFKKLLQK 456 (518)
Q Consensus 429 ~g~~g~~--~~~~~~~e~~~~~~~~~~l~~ 456 (518)
.|+.+.+ +.++..+..+ +.+.+.+..
T Consensus 438 ~Gq~~~v~v~~lv~~~tie--e~i~~~~~~ 465 (500)
T 1z63_A 438 IGQTRNVIVHKLISVGTLE--EKIDQLLAF 465 (500)
T ss_dssp TTTTSCEEEEEEEETTSHH--HHTHHHHTT
T ss_pred cCCCCeeEEEEEEeCCCHH--HHHHHHHHH
Confidence 9987765 4455554332 344444443
No 56
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=2.1e-34 Score=266.76 Aligned_cols=213 Identities=28% Similarity=0.410 Sum_probs=183.8
Q ss_pred CCcccCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhh
Q 010111 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (518)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~ 96 (518)
.|.+..+|++++ +++.+.+++.++||.+|+++|.++++.++. |+|++++||||||||++|++|++..+..
T Consensus 24 ~p~~~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l~~ 93 (242)
T 3fe2_A 24 CPKPVLNFYEAN------FPANVMDVIARQNFTEPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHINH 93 (242)
T ss_dssp CCCCCSSTTTTT------CCHHHHHHHHTTTCCSCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCCccCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHHHh
Confidence 466677788775 999999999999999999999999998874 8999999999999999999999998875
Q ss_pred cc----cCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCC
Q 010111 97 RA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172 (518)
Q Consensus 97 ~~----~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (518)
.. ..+.++||++||++|+.|+.+.+++++...++++..++|+.+....... +..+
T Consensus 94 ~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~ 152 (242)
T 3fe2_A 94 QPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD---------------------LERG 152 (242)
T ss_dssp SCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH---------------------HHHC
T ss_pred ccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHH---------------------hcCC
Confidence 32 2466899999999999999999999988889999999999887766443 3346
Q ss_pred CcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhc
Q 010111 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRR 252 (518)
Q Consensus 173 ~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (518)
++|+|+||++|.+.+.. ....+.++++||+||||++++.+|...+..++..++.
T Consensus 153 ~~I~v~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~------------------------- 206 (242)
T 3fe2_A 153 VEICIATPGRLIDFLEC-GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRP------------------------- 206 (242)
T ss_dssp CSEEEECHHHHHHHHHH-TSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCS-------------------------
T ss_pred CCEEEECHHHHHHHHHc-CCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCc-------------------------
Confidence 89999999999999987 4567889999999999999999999999888876532
Q ss_pred cccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCc
Q 010111 253 CGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299 (518)
Q Consensus 253 ~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~ 299 (518)
..|.+++|||+++.+..+....+.+|..+..+..
T Consensus 207 -------------~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 207 -------------DRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp -------------SCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred -------------cceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 2388999999999999999999999988877653
No 57
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=267.18 Aligned_cols=199 Identities=21% Similarity=0.291 Sum_probs=169.6
Q ss_pred CCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHH
Q 010111 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (518)
Q Consensus 34 ~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~L 113 (518)
+|++.++++|..+||..|+++|.+|++.++.. .++|++++||||||||++|++|+++.+... ..++++||++||++|
T Consensus 98 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~--~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-~~~~~~lil~PtreL 174 (300)
T 3fmo_B 98 RLKPQLLQGVYAMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-NKYPQCLCLSPTYEL 174 (300)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSS--SCCCEEEECCTTSSHHHHHHHHHHHHCCTT-SCSCCEEEECSSHHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCCccHHHHHHHHHhhhcc-CCCceEEEEcCcHHH
Confidence 49999999999999999999999999988751 139999999999999999999999988664 356689999999999
Q ss_pred HHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCC
Q 010111 114 ALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (518)
Q Consensus 114 a~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~ 192 (518)
|.|+++.++.++... ++.+...+|+...... ...+++|+||||++|++++.+.+.
T Consensus 175 a~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~IlV~TP~~l~~~l~~~~~ 230 (300)
T 3fmo_B 175 ALQTGKVIEQMGKFYPELKLAYAVRGNKLERG------------------------QKISEQIVIGTPGTVLDWCSKLKF 230 (300)
T ss_dssp HHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT------------------------CCCCCSEEEECHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh------------------------hcCCCCEEEECHHHHHHHHHhcCC
Confidence 999999999998765 6888888887653221 235679999999999999987666
Q ss_pred CCCCcccEEEEechhHhhh-HhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEE
Q 010111 193 FTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (518)
Q Consensus 193 ~~~~~~~~vViDEah~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (518)
+.+.++++||+||||+|++ .+|...+..++..++. ..|.++
T Consensus 231 ~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~--------------------------------------~~q~i~ 272 (300)
T 3fmo_B 231 IDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR--------------------------------------NCQMLL 272 (300)
T ss_dssp CCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCT--------------------------------------TCEEEE
T ss_pred CChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCC--------------------------------------CCEEEE
Confidence 7889999999999999998 6888888887766532 238999
Q ss_pred EeEeecCChhhhhhccCCCCeEEeeC
Q 010111 272 LSATLTQDPNKLAQLDLHHPLFLTTG 297 (518)
Q Consensus 272 ~SaT~~~~~~~~~~~~~~~~~~~~~~ 297 (518)
+|||++..+..+....+.+|..+...
T Consensus 273 ~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 273 FSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp EESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred EeccCCHHHHHHHHHHCCCCeEEEec
Confidence 99999999999999999999887664
No 58
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=3.4e-33 Score=259.13 Aligned_cols=206 Identities=32% Similarity=0.506 Sum_probs=176.7
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccC
Q 010111 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (518)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~ 100 (518)
..+|++++ +++.+.++++.+||..|+++|.++++.++. |++++++||||+|||++|++|+++.+.... .
T Consensus 42 ~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~il~~l~~~~-~ 110 (249)
T 3ber_A 42 TKTFKDLG------VTDVLCEACDQLGWTKPTKIQIEAIPLALQ----GRDIIGLAETGSGKTGAFALPILNALLETP-Q 110 (249)
T ss_dssp HCCTGGGT------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHSC-C
T ss_pred cCCHHHcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEEcCCCCCchhHhHHHHHHHHhcCC-C
Confidence 34455554 999999999999999999999999998874 899999999999999999999999887653 4
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
+.++||++||++|+.|+.+.+++++...++++..++|+........ .+..+++|+|+||
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~I~v~Tp 169 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL---------------------ALAKKPHIIIATP 169 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHH---------------------HHHTCCSEEEECH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHH---------------------HhcCCCCEEEECH
Confidence 5689999999999999999999998888899999999987655433 2345789999999
Q ss_pred hHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCC
Q 010111 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (518)
++|.+.+.+.+.+.+.++++||+||||++++.+|...+..++..++.
T Consensus 170 ~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~--------------------------------- 216 (249)
T 3ber_A 170 GRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR--------------------------------- 216 (249)
T ss_dssp HHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCS---------------------------------
T ss_pred HHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCC---------------------------------
Confidence 99999988755667889999999999999999999888888876532
Q ss_pred CCCCCceeeEEEeEeecCChhhhhhccCCCCeEEee
Q 010111 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296 (518)
Q Consensus 261 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~ 296 (518)
..+.+++|||++..+..+....+.+|..+.+
T Consensus 217 -----~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 217 -----DRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp -----SSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred -----CCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 2378999999999999999999999887654
No 59
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=4e-33 Score=260.76 Aligned_cols=205 Identities=32% Similarity=0.512 Sum_probs=171.8
Q ss_pred CCCCCCCCC-CCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcc---c
Q 010111 24 FEDCPLDHL-PCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---V 99 (518)
Q Consensus 24 ~~~~~~~~~-~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~---~ 99 (518)
|++..|.++ ..+++.+++++..+||..|+++|.++++.++. ++|++++||||||||++|++|+++.+.... .
T Consensus 49 ~~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~ 124 (262)
T 3ly5_A 49 FEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPR 124 (262)
T ss_dssp SGGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred cccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhcccccc
Confidence 444444444 24899999999999999999999999998875 799999999999999999999999887632 2
Q ss_pred CCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeC
Q 010111 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (518)
Q Consensus 100 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~T 179 (518)
.+.++||++||++|+.|+++.+++++...+..+..++|+......... +..+++|+|+|
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~~~Iiv~T 183 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---------------------LGNGINIIVAT 183 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---------------------HHHCCSEEEEC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---------------------hcCCCCEEEEc
Confidence 356899999999999999999999998889999999999876655432 33468999999
Q ss_pred ChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCC
Q 010111 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (518)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (518)
|+++.+.+.....+.+.++++||+||||++++.+|...+..++..++.
T Consensus 184 p~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~-------------------------------- 231 (262)
T 3ly5_A 184 PGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT-------------------------------- 231 (262)
T ss_dssp HHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCS--------------------------------
T ss_pred HHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCC--------------------------------
Confidence 999999988765677889999999999999999999999999887642
Q ss_pred CCCCCCceeeEEEeEeecCChhhhhhccCCCC
Q 010111 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291 (518)
Q Consensus 260 ~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~ 291 (518)
..|.+++|||+++.+..+....+.++
T Consensus 232 ------~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 232 ------RRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp ------SSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred ------CCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 23889999999999988888776644
No 60
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=4.2e-33 Score=255.81 Aligned_cols=208 Identities=30% Similarity=0.432 Sum_probs=169.6
Q ss_pred CCcccCCCCC-CCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhh
Q 010111 17 SPVDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (518)
Q Consensus 17 ~~~~~~~~~~-~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~ 95 (518)
.|.+..+|++ + ++++.+.+++.++||.+|+++|.++++.++. |+|++++||||+|||++|++|++..+.
T Consensus 14 ~p~p~~~f~~~~------~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~l~~apTGsGKT~~~~l~~~~~l~ 83 (228)
T 3iuy_A 14 IPKPTCRFKDAF------QQYPDLLKSIIRVGILKPTPIQSQAWPIILQ----GIDLIVVAQTGTGKTLSYLMPGFIHLD 83 (228)
T ss_dssp CCCCCCSHHHHH------TTCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHC
T ss_pred CCCChhhHhhhh------ccCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHH
Confidence 4556666666 4 4899999999999999999999999998874 899999999999999999999998876
Q ss_pred hc-----ccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhc
Q 010111 96 NR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 170 (518)
Q Consensus 96 ~~-----~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (518)
.. ...+.++||++||++|+.|+.+.++++. ..++++..++|+........ .+.
T Consensus 84 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------------~~~ 141 (228)
T 3iuy_A 84 SQPISREQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIE---------------------DIS 141 (228)
T ss_dssp ---------CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHH---------------------HHH
T ss_pred hccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHH---------------------Hhc
Confidence 42 1246789999999999999999999986 34788888888876554432 344
Q ss_pred CCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhh
Q 010111 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 250 (518)
Q Consensus 171 ~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (518)
.+++|+|+||+++.+.+.. ....+.++++||+||||++++.+|...+..++..++.
T Consensus 142 ~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~----------------------- 197 (228)
T 3iuy_A 142 KGVDIIIATPGRLNDLQMN-NSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRP----------------------- 197 (228)
T ss_dssp SCCSEEEECHHHHHHHHHT-TCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCS-----------------------
T ss_pred CCCCEEEECHHHHHHHHHc-CCcCcccceEEEEECHHHHhccchHHHHHHHHHhCCc-----------------------
Confidence 6789999999999998877 4567889999999999999999999999888876542
Q ss_pred hccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEe
Q 010111 251 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295 (518)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~ 295 (518)
..|.+++|||+++....+....+.+|..+.
T Consensus 198 ---------------~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 198 ---------------DRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp ---------------SCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred ---------------CCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 238899999999999999998888887664
No 61
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=254.13 Aligned_cols=209 Identities=29% Similarity=0.465 Sum_probs=175.8
Q ss_pred cccCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcc
Q 010111 19 VDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98 (518)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~ 98 (518)
.+..+|++++ +++.+.+.|.++||..|+++|.++++.++. |+++++++|||+|||++|++|+++.+....
T Consensus 22 ~~~~~f~~~~------l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~ 91 (236)
T 2pl3_A 22 NEITRFSDFP------LSKKTLKGLQEAQYRLVTEIQKQTIGLALQ----GKDVLGAAKTGSGKTLAFLVPVLEALYRLQ 91 (236)
T ss_dssp GGCSBGGGSC------CCHHHHHHHHHTTCCBCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHTT
T ss_pred cccCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEEeCCCCcHHHHHHHHHHHHHHhhc
Confidence 3455677775 999999999999999999999999998874 899999999999999999999999876521
Q ss_pred ---cCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcE
Q 010111 99 ---VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175 (518)
Q Consensus 99 ---~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 175 (518)
..+.++||++||++|+.|+.+.++.++...++++..++|+.+....... ..+++|
T Consensus 92 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------------------~~~~~i 149 (236)
T 2pl3_A 92 WTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAER----------------------INNINI 149 (236)
T ss_dssp CCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHH----------------------HTTCSE
T ss_pred ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHh----------------------CCCCCE
Confidence 2456899999999999999999999988888999999998876554332 146899
Q ss_pred EEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhcccc
Q 010111 176 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255 (518)
Q Consensus 176 iv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (518)
+|+||+++.+.+.....+.+.++++||+||||++.+.+|...+..++..++.
T Consensus 150 iv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~---------------------------- 201 (236)
T 2pl3_A 150 LVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK---------------------------- 201 (236)
T ss_dssp EEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCT----------------------------
T ss_pred EEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCC----------------------------
Confidence 9999999999887754567889999999999999999998888888876542
Q ss_pred ccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeC
Q 010111 256 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297 (518)
Q Consensus 256 ~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 297 (518)
..+.+++|||++.....+....+.+|..+...
T Consensus 202 ----------~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 202 ----------KRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp ----------TSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred ----------CCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 22789999999999999999999988877654
No 62
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=6.4e-33 Score=252.86 Aligned_cols=206 Identities=23% Similarity=0.358 Sum_probs=173.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCC
Q 010111 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (518)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~ 101 (518)
.+|++++ +++.+.++++++||.+|+++|.++++.++. ++++++++|||+|||++|++|+++.+... ..+
T Consensus 4 ~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-~~~ 72 (219)
T 1q0u_A 4 TQFTRFP------FQPFIIEAIKTLRFYKPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPE-RAE 72 (219)
T ss_dssp CCGGGSC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTT-SCS
T ss_pred CCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhC-cCC
Confidence 4567765 999999999999999999999999998874 89999999999999999999999987653 245
Q ss_pred ccEEEEcCcHHHHHHHHHHHHHhcccc----CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEE
Q 010111 102 LRALVVLPTRDLALQVKDVFAAIAPAV----GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (518)
Q Consensus 102 ~~~lil~Pt~~La~Q~~~~~~~~~~~~----~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv 177 (518)
.++||++||++|+.|+.+.++++.... ++.+..++|+.+..... +.+..+++|+|
T Consensus 73 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------------------~~~~~~~~Iiv 131 (219)
T 1q0u_A 73 VQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---------------------EKLNVQPHIVI 131 (219)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---------------------CCCSSCCSEEE
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---------------------HHcCCCCCEEE
Confidence 689999999999999999999998766 67888888887654331 12345789999
Q ss_pred eCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhcccccc
Q 010111 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (518)
Q Consensus 178 ~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (518)
+||+++.+.+.. +...+.+++++|+||||++.+.++...+..++..++.
T Consensus 132 ~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~------------------------------ 180 (219)
T 1q0u_A 132 GTPGRINDFIRE-QALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPK------------------------------ 180 (219)
T ss_dssp ECHHHHHHHHHT-TCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCT------------------------------
T ss_pred eCHHHHHHHHHc-CCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCc------------------------------
Confidence 999999998887 4567889999999999999998888888888776531
Q ss_pred CCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCC
Q 010111 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (518)
Q Consensus 258 ~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 298 (518)
..+.+++|||++.+...+....+.+|..+....
T Consensus 181 --------~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 181 --------DLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp --------TCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred --------ccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 238899999999999999999999998775543
No 63
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.4e-32 Score=252.48 Aligned_cols=206 Identities=22% Similarity=0.327 Sum_probs=171.6
Q ss_pred cccCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcc
Q 010111 19 VDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98 (518)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~ 98 (518)
.+..+|++++ +++.+.++++++||..|+++|.++++.++. |+|+++++|||+|||++|++|+++.+...
T Consensus 21 ~~~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~- 89 (230)
T 2oxc_A 21 AEPADFESLL------LSRPVLEGLRAAGFERPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSLVLE- 89 (230)
T ss_dssp ---CCGGGGT------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTT-
T ss_pred CCCCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhc-
Confidence 3445577765 999999999999999999999999998774 89999999999999999999999987653
Q ss_pred cCCccEEEEcCcHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEE
Q 010111 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (518)
Q Consensus 99 ~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv 177 (518)
..+.++||++||++|+.|+.+.++++.... ++++..++|+......... ..+++|+|
T Consensus 90 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------------------~~~~~Iiv 147 (230)
T 2oxc_A 90 NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTR----------------------LKKCHIAV 147 (230)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHH----------------------TTSCSEEE
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHh----------------------ccCCCEEE
Confidence 245689999999999999999999998765 7899999999876655332 24689999
Q ss_pred eCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHh-HHhHHHHHHHhcccccccccCCcccccccccccchhhhccccc
Q 010111 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA-YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE 256 (518)
Q Consensus 178 ~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (518)
+||+++.+.+.. +.+.+.++++||+||||++++.+ |...+..++..++.
T Consensus 148 ~Tp~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~----------------------------- 197 (230)
T 2oxc_A 148 GSPGRIKQLIEL-DYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPA----------------------------- 197 (230)
T ss_dssp ECHHHHHHHHHT-TSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCS-----------------------------
T ss_pred ECHHHHHHHHhc-CCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCC-----------------------------
Confidence 999999998876 45678899999999999999887 88888888776542
Q ss_pred cCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEee
Q 010111 257 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296 (518)
Q Consensus 257 ~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~ 296 (518)
..|.+++|||++.....+...++.+|..+..
T Consensus 198 ---------~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 198 ---------SKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp ---------SCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred ---------CCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 2378999999988888888888888876643
No 64
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.7e-32 Score=247.72 Aligned_cols=201 Identities=27% Similarity=0.470 Sum_probs=171.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCc
Q 010111 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102 (518)
Q Consensus 23 ~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~ 102 (518)
+|++++ +++.+.+++.++||.+|+|+|.++++.++. ++++++.+|||+|||++|++|+++.+... ..+.
T Consensus 4 ~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~apTGsGKT~~~~~~~~~~~~~~-~~~~ 72 (206)
T 1vec_A 4 EFEDYC------LKRELLMGIFEMGWEKPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLK-KDNI 72 (206)
T ss_dssp SGGGSC------CCHHHHHHHHTTTCCSCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTT-SCSC
T ss_pred ChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHcc----CCCEEEECCCCCchHHHHHHHHHHHhccc-CCCe
Confidence 466665 999999999999999999999999998874 79999999999999999999999887653 3456
Q ss_pred cEEEEcCcHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCCh
Q 010111 103 RALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (518)
Q Consensus 103 ~~lil~Pt~~La~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~ 181 (518)
++||++||++|+.|+.+.+.++.... +..+...+|+........ .+..+++|+|+||+
T Consensus 73 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~i~v~T~~ 131 (206)
T 1vec_A 73 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---------------------RLDDTVHVVIATPG 131 (206)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---------------------HTTSCCSEEEECHH
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---------------------hcCCCCCEEEeCHH
Confidence 89999999999999999999998777 788999999988765543 23457899999999
Q ss_pred HHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCC
Q 010111 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261 (518)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (518)
++.+.+.+ +...+.+++++|+||||++.+.++...+..++..++.
T Consensus 132 ~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~---------------------------------- 176 (206)
T 1vec_A 132 RILDLIKK-GVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK---------------------------------- 176 (206)
T ss_dssp HHHHHHHT-TCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCT----------------------------------
T ss_pred HHHHHHHc-CCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCc----------------------------------
Confidence 99998887 4567889999999999999998898888888876542
Q ss_pred CCCCceeeEEEeEeecCChhhhhhccCCCCeEE
Q 010111 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294 (518)
Q Consensus 262 ~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~ 294 (518)
..+.+++|||++.....+....+.+|..+
T Consensus 177 ----~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 177 ----NRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp ----TCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred ----cceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 23789999999988888888888887654
No 65
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=6.7e-33 Score=255.68 Aligned_cols=210 Identities=26% Similarity=0.404 Sum_probs=168.6
Q ss_pred CcccCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhc
Q 010111 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (518)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~ 97 (518)
|.+..+|++++ +++.+.+++.++||..|+++|.++++.++. ++|+++.||||+|||++|++|+++.+...
T Consensus 26 ~~~~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~~~ 95 (237)
T 3bor_A 26 NEIVDNFDDMN------LKESLLRGIYAYGFEKPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLEIE 95 (237)
T ss_dssp -CCCCSGGGSC------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCCTT
T ss_pred CCccCChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhc
Confidence 33456677775 999999999999999999999999998874 89999999999999999999999987653
Q ss_pred ccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEE
Q 010111 98 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (518)
Q Consensus 98 ~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv 177 (518)
..+.++||++||++|+.|+.+.+++++...++.+..++|+.........+ ....++|+|
T Consensus 96 -~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l--------------------~~~~~~Ilv 154 (237)
T 3bor_A 96 -FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKL--------------------QAEAPHIVV 154 (237)
T ss_dssp -SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC---------------------------------CCCSEEE
T ss_pred -CCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHH--------------------hcCCCCEEE
Confidence 24568999999999999999999999888888899888887655443221 123389999
Q ss_pred eCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhcccccc
Q 010111 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (518)
Q Consensus 178 ~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (518)
+||++|.+.+.+ +...+.++++||+||||++++.+|...+..++..++.
T Consensus 155 ~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~------------------------------ 203 (237)
T 3bor_A 155 GTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNT------------------------------ 203 (237)
T ss_dssp ECHHHHHHHHHT-TSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCT------------------------------
T ss_pred ECHHHHHHHHHh-CCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCC------------------------------
Confidence 999999999887 4567888999999999999999888888888776531
Q ss_pred CCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeC
Q 010111 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297 (518)
Q Consensus 258 ~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 297 (518)
..+.+++|||++.....+....+.+|..+.+.
T Consensus 204 --------~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 204 --------SIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp --------TCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred --------CCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 23889999999999999888888888876543
No 66
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=8.4e-32 Score=245.78 Aligned_cols=205 Identities=24% Similarity=0.361 Sum_probs=170.6
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccC
Q 010111 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (518)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~ 100 (518)
.+.|+++. +++.+.++|.++||..|+++|.++++.++. ++++++++|||+|||++|++|++..+... ..
T Consensus 13 ~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~-~~ 81 (220)
T 1t6n_A 13 SSGFRDFL------LKPELLRAIVDCGFEHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPV-TG 81 (220)
T ss_dssp -CCSTTSC------CCHHHHHHHHHTTCCCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCC-TT
T ss_pred CCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhcc-CC
Confidence 34566664 999999999999999999999999998875 79999999999999999999999887653 23
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~T 179 (518)
+.++||++||++|+.|+.+.++++.... ++++..++|+.+.......+. ...++|+|+|
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~--------------------~~~~~i~v~T 141 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK--------------------KNCPHIVVGT 141 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH--------------------HSCCSEEEEC
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHh--------------------cCCCCEEEeC
Confidence 4589999999999999999999998776 789999999988666544321 2357999999
Q ss_pred ChHHHHhHhcCCCCCCCcccEEEEechhHhhh-HhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccC
Q 010111 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (518)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vViDEah~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (518)
|+++.+.+.. ....+.+++++|+||||++++ .++...+..++...+.
T Consensus 142 ~~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~------------------------------- 189 (220)
T 1t6n_A 142 PGRILALARN-KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH------------------------------- 189 (220)
T ss_dssp HHHHHHHHHT-TSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCS-------------------------------
T ss_pred HHHHHHHHHh-CCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCC-------------------------------
Confidence 9999998887 456788999999999999987 6777777777765431
Q ss_pred CCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEe
Q 010111 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295 (518)
Q Consensus 259 ~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~ 295 (518)
..+.+++|||++.....+...++.+|..+.
T Consensus 190 -------~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 190 -------EKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp -------SSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred -------cCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 238899999999999999988888887653
No 67
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=1.1e-32 Score=257.31 Aligned_cols=215 Identities=27% Similarity=0.427 Sum_probs=178.2
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcc-
Q 010111 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA- 98 (518)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~- 98 (518)
+..+|++++ +++.+.++|..+||..|+++|.++++.++. ++|++++||||+|||++|++|+++.+....
T Consensus 21 ~~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~ 90 (253)
T 1wrb_A 21 VIENFDELK------LDPTIRNNILLASYQRPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDL 90 (253)
T ss_dssp CCCSSGGGS------CCCSTTTTTTTTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred ccCCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhcc
Confidence 445677775 888999999999999999999999998875 899999999999999999999999886532
Q ss_pred -------cCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcC
Q 010111 99 -------VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (518)
Q Consensus 99 -------~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (518)
..+.++||++||++|+.|+.+.+++++...++.+..++|+........ .+..
T Consensus 91 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~ 149 (253)
T 1wrb_A 91 NQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR---------------------EVQM 149 (253)
T ss_dssp ------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH---------------------HHSS
T ss_pred ccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---------------------HhCC
Confidence 234689999999999999999999998888899999999987665543 3446
Q ss_pred CCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhh
Q 010111 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251 (518)
Q Consensus 172 ~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (518)
+++|+|+||++|.+.+.. ....+.++++||+||||++++.+|...+..++..+....
T Consensus 150 ~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~---------------------- 206 (253)
T 1wrb_A 150 GCHLLVATPGRLVDFIEK-NKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPS---------------------- 206 (253)
T ss_dssp CCSEEEECHHHHHHHHHT-TSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCC----------------------
T ss_pred CCCEEEECHHHHHHHHHc-CCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCC----------------------
Confidence 789999999999999887 456788999999999999999999998888887542111
Q ss_pred ccccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCCcc
Q 010111 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 300 (518)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (518)
....|.+++|||++..+..+....+.+|..+..+...
T Consensus 207 ------------~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~ 243 (253)
T 1wrb_A 207 ------------GINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVG 243 (253)
T ss_dssp ------------GGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC---
T ss_pred ------------CCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCC
Confidence 0123889999999999999999899899888776543
No 68
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=3.7e-32 Score=248.93 Aligned_cols=208 Identities=25% Similarity=0.418 Sum_probs=169.6
Q ss_pred cccCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcc
Q 010111 19 VDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98 (518)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~ 98 (518)
....+|++++ +++.+.+.+.++||..|+++|.++++.++. ++++++.+|||+|||++|++|+++.+...
T Consensus 11 ~~~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l~~~- 79 (224)
T 1qde_A 11 KVVYKFDDME------LDENLLRGVFGYGFEEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTS- 79 (224)
T ss_dssp CCCCCGGGGT------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTT-
T ss_pred cccCChhhcC------CCHHHHHHHHHCCCCCCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHhcc-
Confidence 3455677775 999999999999999999999999998874 79999999999999999999999988654
Q ss_pred cCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEe
Q 010111 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (518)
Q Consensus 99 ~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~ 178 (518)
..+.++||++|+++|+.|+.+.+.+++...++++..++|+......... ...++|+|+
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------------------~~~~~iiv~ 137 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG----------------------LRDAQIVVG 137 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC--------------------------------CTTCSEEEE
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc----------------------CCCCCEEEE
Confidence 3456899999999999999999999988888999999998765544221 124799999
Q ss_pred CChHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccC
Q 010111 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (518)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (518)
||+++.+.+.+ ....+.++++||+||||++.+.++...+..++..++.
T Consensus 138 Tp~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~------------------------------- 185 (224)
T 1qde_A 138 TPGRVFDNIQR-RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP------------------------------- 185 (224)
T ss_dssp CHHHHHHHHHT-TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCT-------------------------------
T ss_pred CHHHHHHHHHh-CCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCc-------------------------------
Confidence 99999998887 4567889999999999999998888888888776532
Q ss_pred CCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCC
Q 010111 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (518)
Q Consensus 259 ~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 298 (518)
..+.+++|||+++....+....+.+|..+....
T Consensus 186 -------~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 186 -------TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp -------TCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred -------cCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 237899999999988888888888888776544
No 69
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=254.81 Aligned_cols=219 Identities=27% Similarity=0.462 Sum_probs=175.0
Q ss_pred CCcccCCCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhh
Q 010111 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (518)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~ 96 (518)
.|.+..+|+++. ...++++.+.+++.++||..|+++|.++++.++. |+++++.||||+|||++|++|+++.+..
T Consensus 20 ~p~~~~~f~~l~--~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~ 93 (245)
T 3dkp_A 20 LPDPIATFQQLD--QEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQLKQ 93 (245)
T ss_dssp CCCCCSSHHHHH--HHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHCS
T ss_pred CCCcccCHHHhh--hccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHhh
Confidence 455566666551 0014899999999999999999999999998875 8999999999999999999999998876
Q ss_pred cccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEE
Q 010111 97 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176 (518)
Q Consensus 97 ~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii 176 (518)
....+.++||++||++|+.|+++.+++++...++.+..+.|+....... ......+++|+
T Consensus 94 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~I~ 153 (245)
T 3dkp_A 94 PANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKF--------------------GPKSSKKFDIL 153 (245)
T ss_dssp CCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTT--------------------STTSCCCCCEE
T ss_pred cccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHh--------------------hhhhcCCCCEE
Confidence 5456678999999999999999999999988888888887765322211 01234578999
Q ss_pred EeCChHHHHhHhcCC-CCCCCcccEEEEechhHhhhH---hHHhHHHHHHHhcccccccccCCcccccccccccchhhhc
Q 010111 177 VATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLRE---AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRR 252 (518)
Q Consensus 177 v~Tp~~l~~~l~~~~-~~~~~~~~~vViDEah~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (518)
|+||+++.+.+.... .+.+.++++||+||||++++. +|...+..++.....
T Consensus 154 v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~------------------------- 208 (245)
T 3dkp_A 154 VTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTS------------------------- 208 (245)
T ss_dssp EECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCC-------------------------
T ss_pred EECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCC-------------------------
Confidence 999999999997743 467889999999999999985 555556555543321
Q ss_pred cccccCCCCCCCCceeeEEEeEeecCChhhhhhccCCCCeEEeeCC
Q 010111 253 CGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (518)
Q Consensus 253 ~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 298 (518)
+..+.+++|||++.++..+....+.+|..+..+.
T Consensus 209 ------------~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 209 ------------HKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp ------------TTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred ------------CCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 2237899999999999999999999999887764
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=1.6e-32 Score=296.89 Aligned_cols=332 Identities=17% Similarity=0.170 Sum_probs=213.6
Q ss_pred HHHHHHHHhCC-------CCccchhhHHHHHHhhCCCC----------CCCCEEEECCCCchHHHHhHHHHHHHhhhccc
Q 010111 37 PRLKVALQNMG-------ISSLFPVQVAVWQETIGPGL----------FERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (518)
Q Consensus 37 ~~~~~~l~~~g-------~~~~~~~Q~~a~~~~~~~~~----------~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~ 99 (518)
+.+++.+..+- ...|+|+|.+|++.++..+. .+++++++++||||||+++ ++++..+... .
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-~ 328 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-D 328 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-T
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-C
Confidence 45666666532 23599999999998875321 2478999999999999997 6666555432 2
Q ss_pred CCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhh-cCCCcEEEe
Q 010111 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVA 178 (518)
Q Consensus 100 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iiv~ 178 (518)
...++|||||+++|+.|+.+.+..+... .+.++.+...... .+ ..+++|+|+
T Consensus 329 ~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~---------------------~L~~~~~~IiVt 381 (1038)
T 2w00_A 329 FIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKR---------------------NLDKDDNKIIVT 381 (1038)
T ss_dssp TCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHH---------------------HHHCSSCCEEEE
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHH---------------------HhcCCCCCEEEE
Confidence 3458999999999999999999988642 1233333332222 22 246799999
Q ss_pred CChHHHHhHhcCCCC-CCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhcccccc
Q 010111 179 TPGRLMDHINATRGF-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (518)
Q Consensus 179 Tp~~l~~~l~~~~~~-~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (518)
||++|...+...... .+..+.+||+||||++....+ ...+...++
T Consensus 382 Tiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~~~---~~~I~~~~p------------------------------- 427 (1038)
T 2w00_A 382 TIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGEA---QKNLKKKFK------------------------------- 427 (1038)
T ss_dssp EHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHHHH---HHHHHHHCS-------------------------------
T ss_pred EHHHHHHHHhcccchhccccccEEEEEccchhcchHH---HHHHHHhCC-------------------------------
Confidence 999999887653222 356788999999999865433 334444332
Q ss_pred CCCCCCCCceeeEEEeEeecCChh----hhhh-----------------ccCCCCeEEeeCC-c-ccc---Cc-c-----
Q 010111 258 GFKDKPYPRLVKMVLSATLTQDPN----KLAQ-----------------LDLHHPLFLTTGE-T-RYK---LP-E----- 305 (518)
Q Consensus 258 ~~~~~~~~~~~~i~~SaT~~~~~~----~~~~-----------------~~~~~~~~~~~~~-~-~~~---~~-~----- 305 (518)
..+.+++|||+..... .... ....-|..+.... . ... .. .
T Consensus 428 --------~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~ 499 (1038)
T 2w00_A 428 --------RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLS 499 (1038)
T ss_dssp --------SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHH
T ss_pred --------cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHH
Confidence 2367999999874321 0111 1111122111100 0 000 00 0
Q ss_pred ccceeeeecCCCCcHHHHHH-HHHh---c--------CCCcEEEEcCChhhHHHHHHHHhhcCC---------CceeE-E
Q 010111 306 RLESYKLICESKLKPLYLVA-LLQS---L--------GEEKCIVFTSSVESTHRLCTLLNHFGE---------LRIKI-K 363 (518)
Q Consensus 306 ~~~~~~~~~~~~~k~~~l~~-~l~~---~--------~~~~~lVf~~s~~~~~~l~~~L~~~~~---------~~~~v-~ 363 (518)
.+....... ...+...+.. ++.. . .+.++||||+|+.+|..+++.|...+. .+.++ .
T Consensus 500 ~i~~~~~l~-~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~av 578 (1038)
T 2w00_A 500 AAENQQAFL-HPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIAT 578 (1038)
T ss_dssp HTCSTTTTT-CHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEE
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEE
Confidence 000000000 1111222222 2221 1 235899999999999999999976531 12444 3
Q ss_pred Ecccc----------C----------Ch-----------------------------HHHHHHHHHHhcCCceEEEEcCc
Q 010111 364 EYSGL----------Q----------RQ-----------------------------SVRSKTLKAFREGKIQVLVSSDA 394 (518)
Q Consensus 364 ~~hg~----------~----------~~-----------------------------~~r~~~~~~f~~g~~~vLvaT~~ 394 (518)
++||+ + ++ .+|..++++|++|+++|||+|++
T Consensus 579 v~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~ 658 (1038)
T 2w00_A 579 IFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGM 658 (1038)
T ss_dssp ECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESST
T ss_pred EEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcch
Confidence 55542 2 22 14888999999999999999999
Q ss_pred cccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCC----CcEEEEeec
Q 010111 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL----GRCFTLLHK 441 (518)
Q Consensus 395 ~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~----g~~~~~~~~ 441 (518)
+.+|+|+|.+ .++++|.|.+...|+|++||++|.+.. |.++.|+..
T Consensus 659 lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 659 FLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp TSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred HHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 9999999999 678899999999999999999998753 667777653
No 71
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.5e-31 Score=275.17 Aligned_cols=366 Identities=18% Similarity=0.166 Sum_probs=216.7
Q ss_pred ccchhhHHHHHHhhCC-----CCCCCCEEEECCCCchHHHHhHHHHHHHhhhccc---CCccEEEEcCcHHHHHHHHHHH
Q 010111 50 SLFPVQVAVWQETIGP-----GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---RCLRALVVLPTRDLALQVKDVF 121 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~-----~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~---~~~~~lil~Pt~~La~Q~~~~~ 121 (518)
.|+|||.+++..+... ...+.++++..+||+|||++++..+...+...+. ...++||++|+ .|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 7999999998876532 1346789999999999999987776665544321 12468999997 8899999999
Q ss_pred HHhccccCceEEEeecCCchHH--HHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCccc
Q 010111 122 AAIAPAVGLSVGLAVGQSSIAD--EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 199 (518)
Q Consensus 122 ~~~~~~~~~~v~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~ 199 (518)
.+++.. .+.+..++++..... ....+.... ......+|+|+|++.+...... +....++
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~---------------~~~~~~~vvi~ty~~l~~~~~~---l~~~~~~ 194 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQ---------------GMRIPTPILIISYETFRLHAEV---LHKGKVG 194 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCC---------------SSCCSCCEEEEEHHHHHHHTTT---TTTSCCC
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhc---------------CCCCCCcEEEeeHHHHHhhHHH---hhcCCcc
Confidence 999765 456666666553221 111111100 0112468999999998765432 3345689
Q ss_pred EEEEechhHhhhHhHHhHHHHHHHhcccccccccCCccccccc----ccccch-----------hh--------------
Q 010111 200 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS----AFGSLK-----------TI-------------- 250 (518)
Q Consensus 200 ~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----------~~-------------- 250 (518)
+||+||||++.+.... ....+..+..... +...++.... ++..+. .+
T Consensus 195 ~vI~DEaH~ikn~~~~--~~~al~~l~~~~r--l~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~ 270 (644)
T 1z3i_X 195 LVICDEGHRLKNSDNQ--TYLALNSMNAQRR--VLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDA 270 (644)
T ss_dssp EEEETTGGGCCTTCHH--HHHHHHHHCCSEE--EEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHST
T ss_pred EEEEECceecCChhhH--HHHHHHhcccCcE--EEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCc
Confidence 9999999998653221 1111111221111 1111111111 000000 00
Q ss_pred ---------------------hccccccC--CCCCCCCceeeEEEeEeecCChhhhhhcc--------------------
Q 010111 251 ---------------------RRCGVERG--FKDKPYPRLVKMVLSATLTQDPNKLAQLD-------------------- 287 (518)
Q Consensus 251 ---------------------~~~~~~~~--~~~~~~~~~~~i~~SaT~~~~~~~~~~~~-------------------- 287 (518)
..+.+.+. ......|..........+++.-..+....
T Consensus 271 ~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l 350 (644)
T 1z3i_X 271 DASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSL 350 (644)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHH
Confidence 00000000 00011222222222222211111100000
Q ss_pred ---------CCCCeEEee----CCcc-----ccCccccceeeeecCCCCcHHHHHHHHHh---cCCCcEEEEcCChhhHH
Q 010111 288 ---------LHHPLFLTT----GETR-----YKLPERLESYKLICESKLKPLYLVALLQS---LGEEKCIVFTSSVESTH 346 (518)
Q Consensus 288 ---------~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~~lVf~~s~~~~~ 346 (518)
..+|..+.. .... ...+..............|...+..++.. ..+.++||||+++..++
T Consensus 351 ~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~ 430 (644)
T 1z3i_X 351 SSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLD 430 (644)
T ss_dssp HHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHH
Confidence 000000000 0000 00000000000111223455555555543 35789999999999999
Q ss_pred HHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCce---EEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhh
Q 010111 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ---VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 423 (518)
Q Consensus 347 ~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~---vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~ 423 (518)
.+.+.|...+ +.+..+||+++..+|.+++++|++|... +|++|+++++|+|++++++||+||+|+++..|.|++
T Consensus 431 ~l~~~l~~~g---~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~ 507 (644)
T 1z3i_X 431 LFEKLCRNRR---YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAM 507 (644)
T ss_dssp HHHHHHHHHT---CCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHH
T ss_pred HHHHHHHHCC---CCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHH
Confidence 9999998876 8899999999999999999999998764 899999999999999999999999999999999999
Q ss_pred hhcccCCCCCc--EEEEeecc
Q 010111 424 GRTARAGQLGR--CFTLLHKD 442 (518)
Q Consensus 424 GR~gR~g~~g~--~~~~~~~~ 442 (518)
||++|.|+... ++.|+..+
T Consensus 508 gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 508 ARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp TTSSSTTCCSCEEEEEEEETT
T ss_pred HhhhhcCCCCceEEEEEEECC
Confidence 99999997765 44556655
No 72
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.6e-31 Score=287.69 Aligned_cols=333 Identities=20% Similarity=0.210 Sum_probs=220.5
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccC
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 129 (518)
+|+|||.+++..++.....+.+++++.+||+|||++++..+...+... .....+||||| ..|+.||.+++.++++ +
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~-~~~~~~LIV~P-~sll~qW~~E~~~~~p--~ 311 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR-RQNGPHIIVVP-LSTMPAWLDTFEKWAP--D 311 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH-SCCSCEEEECC-TTTHHHHHHHHHHHST--T
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc-CCCCCEEEEEC-chHHHHHHHHHHHHCC--C
Confidence 799999999987664445689999999999999998776655444333 23446899999 6889999999999975 5
Q ss_pred ceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHh
Q 010111 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (518)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~ 209 (518)
+++.+++|+.........+.-... ..........++|+|+|++.+...... +....+++||+||||++
T Consensus 312 ~~v~~~~g~~~~r~~~~~~~~~~~---------~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~l 379 (800)
T 3mwy_W 312 LNCICYMGNQKSRDTIREYEFYTN---------PRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHRL 379 (800)
T ss_dssp CCEEECCCSSHHHHHHHHHHSCSC---------C-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGGG
T ss_pred ceEEEEeCCHHHHHHHHHHHhhcc---------ccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhhh
Confidence 778888888765554443221100 000011224579999999999765433 22235889999999998
Q ss_pred hhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCCCCCCCceeeEEEeEeecCC-hhhhhh---
Q 010111 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD-PNKLAQ--- 285 (518)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~-~~~~~~--- 285 (518)
.+.. ......+..+... ..+++|||+-.+ ...+..
T Consensus 380 kn~~--s~~~~~l~~l~~~---------------------------------------~rl~LTgTPiqN~l~el~~ll~ 418 (800)
T 3mwy_W 380 KNAE--SSLYESLNSFKVA---------------------------------------NRMLITGTPLQNNIKELAALVN 418 (800)
T ss_dssp CCSS--SHHHHHHTTSEEE---------------------------------------EEEEECSCCCSSCSHHHHHHHH
T ss_pred cCch--hHHHHHHHHhhhc---------------------------------------cEEEeeCCcCCCCHHHHHHHHH
Confidence 4321 1122222222111 234555554211 000000
Q ss_pred c-----------------------------cCCCCeEEeeCCccc--cCcccccee------------------------
Q 010111 286 L-----------------------------DLHHPLFLTTGETRY--KLPERLESY------------------------ 310 (518)
Q Consensus 286 ~-----------------------------~~~~~~~~~~~~~~~--~~~~~~~~~------------------------ 310 (518)
. ....|.......... .+|......
T Consensus 419 fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l 498 (800)
T 3mwy_W 419 FLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSAL 498 (800)
T ss_dssp HHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC--
T ss_pred HhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 0 000011100000000 000000000
Q ss_pred --------------------------------------------------eeecCCCCcHHHHHHHHHhc--CCCcEEEE
Q 010111 311 --------------------------------------------------KLICESKLKPLYLVALLQSL--GEEKCIVF 338 (518)
Q Consensus 311 --------------------------------------------------~~~~~~~~k~~~l~~~l~~~--~~~~~lVf 338 (518)
........|...+..++... .+.++|||
T Consensus 499 ~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIF 578 (800)
T 3mwy_W 499 TAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIF 578 (800)
T ss_dssp --------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEE
T ss_pred hhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEE
Confidence 00011244566677777654 46799999
Q ss_pred cCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCce---EEEEcCccccCCCCCCCCEEEEcCCCCC
Q 010111 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ---VLVSSDAMTRGMDVEGVNNVVNYDKPAY 415 (518)
Q Consensus 339 ~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~---vLvaT~~~~~GiDip~v~~VI~~~~p~s 415 (518)
|+....++.+.+.|...+ +.+..+||+++..+|.+++++|+++... +|++|.++++|+|++.+++||+||+|++
T Consensus 579 sq~~~~ld~L~~~L~~~g---~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wn 655 (800)
T 3mwy_W 579 SQMVRMLDILGDYLSIKG---INFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWN 655 (800)
T ss_dssp ESCHHHHHHHHHHHHHHT---CCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSC
T ss_pred echHHHHHHHHHHHHhCC---CCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCC
Confidence 999999999999998776 8999999999999999999999986654 8999999999999999999999999999
Q ss_pred ccchhhhhhhcccCCCCCc--EEEEeecc
Q 010111 416 IKTYIHRAGRTARAGQLGR--CFTLLHKD 442 (518)
Q Consensus 416 ~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 442 (518)
+..+.||+||++|.|+... ++.|++.+
T Consensus 656 p~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 656 PQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp SHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred hhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 9999999999999997655 45566655
No 73
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.98 E-value=1.4e-31 Score=241.91 Aligned_cols=202 Identities=33% Similarity=0.500 Sum_probs=169.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcc--cC
Q 010111 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VR 100 (518)
Q Consensus 23 ~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~--~~ 100 (518)
+|++++ +++.+.+++.++||..|+|+|.++++.++. ++++++.+|||+|||++|++|+++.+.... ..
T Consensus 2 ~f~~~~------l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~ 71 (207)
T 2gxq_A 2 EFKDFP------LKPEILEALHGRGLTTPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGR 71 (207)
T ss_dssp CGGGSC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTC
T ss_pred ChhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCC
Confidence 356664 999999999999999999999999998875 899999999999999999999999876421 24
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
+.++||++||++|+.|+.+.+.+++.. +++..++|+......... +..+++|+|+||
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---------------------~~~~~~i~v~T~ 128 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEA---------------------LLRGADAVVATP 128 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHH---------------------HHHCCSEEEECH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHH---------------------hhCCCCEEEECH
Confidence 568999999999999999999998764 678888888776554332 334689999999
Q ss_pred hHHHHhHhcCCCCCCCcccEEEEechhHhhhHhHHhHHHHHHHhcccccccccCCcccccccccccchhhhccccccCCC
Q 010111 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (518)
+++.+.+.. +...+.++++||+||||++.+.++...+..++..++.
T Consensus 129 ~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~--------------------------------- 174 (207)
T 2gxq_A 129 GRALDYLRQ-GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPP--------------------------------- 174 (207)
T ss_dssp HHHHHHHHH-TSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCT---------------------------------
T ss_pred HHHHHHHHc-CCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCc---------------------------------
Confidence 999999887 4567889999999999999998888888888765431
Q ss_pred CCCCCceeeEEEeEeecCChhhhhhccCCCCeEEee
Q 010111 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296 (518)
Q Consensus 261 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~ 296 (518)
..+.+++|||+++....+....+.+|..+..
T Consensus 175 -----~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 175 -----SRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp -----TSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred -----cCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 2378999999998888888888888887654
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=2.8e-28 Score=250.63 Aligned_cols=131 Identities=25% Similarity=0.289 Sum_probs=111.1
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
+|+ .|+++|..+++.++. |+ ++.++||+|||++|++|++.+... +..++|++||++||.|.++++..++
T Consensus 76 lG~-~Pt~VQ~~~ip~Llq----G~--IaeakTGeGKTLvf~Lp~~L~aL~----G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHE----GK--IAEMKTGEGKTLVATLAVALNALT----GKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHT----TS--EEECCSTHHHHHHHHHHHHHHHTT----CSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccC----Cc--eeeccCCCchHHHHHHHHHHHHHh----CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 899 999999999988774 66 999999999999999999754443 3379999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHhHhcCC-----CCCCC---
Q 010111 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLE--- 196 (518)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~-----~~~~~--- 196 (518)
..+++++++++|+.+...+. ...++||+|+||++| ++++...- .+.++
T Consensus 145 ~~lGLsv~~i~Gg~~~~~r~-----------------------~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~ 201 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPAERR-----------------------KAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDH 201 (997)
T ss_dssp HTTTCCEEECCTTCCHHHHH-----------------------HHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSS
T ss_pred HhcCCeEEEEeCCCCHHHHH-----------------------HHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCC
Confidence 99999999999998754332 224689999999999 78887632 24567
Q ss_pred cccEEEEechhHhh
Q 010111 197 HLCYLVVDETDRLL 210 (518)
Q Consensus 197 ~~~~vViDEah~~~ 210 (518)
.+.++|+||||.|+
T Consensus 202 ~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 202 PLHYAIIDEVDSIL 215 (997)
T ss_dssp SSCEEEETTHHHHT
T ss_pred CcceEEEechHHHH
Confidence 89999999999987
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.97 E-value=9.4e-29 Score=259.21 Aligned_cols=132 Identities=19% Similarity=0.273 Sum_probs=114.6
Q ss_pred CCcHHHHHHHHHhc--CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc
Q 010111 317 KLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (518)
Q Consensus 317 ~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 394 (518)
..+...+...+... .+.++||||+|+..++.+++.|...+ +.+..+||++++.+|.++++.|+.|+++|||||++
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~g---i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~ 498 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHG---IRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL 498 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcC---CCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh
Confidence 34455555545432 56799999999999999999999876 78999999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEEcCC-----CCCccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHHH
Q 010111 395 MTRGMDVEGVNNVVNYDK-----PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKK 452 (518)
Q Consensus 395 ~~~GiDip~v~~VI~~~~-----p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~ 452 (518)
+++|+|+|++++||++|. |.|...|+||+||+||.+ .|.+++|+++.+....+.+.+
T Consensus 499 l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 499 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHHH
T ss_pred hhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHHH
Confidence 999999999999999997 889999999999999995 899999999877655444443
No 76
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.96 E-value=2.4e-27 Score=248.48 Aligned_cols=131 Identities=23% Similarity=0.287 Sum_probs=114.3
Q ss_pred CCcHHHHHHHHHhc--CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc
Q 010111 317 KLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (518)
Q Consensus 317 ~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 394 (518)
..+...+...+... .+.++||||+|+..++.+++.|...+ +++..+||++++.+|..+++.|++|+++|||||++
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~g---i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~ 504 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIG---IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINL 504 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCC
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcC---CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecch
Confidence 34445555545432 46799999999999999999999876 78999999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEEcCC-----CCCccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHH
Q 010111 395 MTRGMDVEGVNNVVNYDK-----PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFK 451 (518)
Q Consensus 395 ~~~GiDip~v~~VI~~~~-----p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~ 451 (518)
+++|+|+|++++||++|. |.+...|+||+||+||. ..|.+++|+++.+....+.+.
T Consensus 505 l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 505 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp CSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred hhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 999999999999999997 99999999999999998 799999999987765544444
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=3.7e-28 Score=209.87 Aligned_cols=149 Identities=26% Similarity=0.470 Sum_probs=139.2
Q ss_pred ccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhc
Q 010111 304 PERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383 (518)
Q Consensus 304 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~ 383 (518)
+..+.+++..++...|...|..++.....+++||||+++..++.+++.|...+ +.+..+||++++.+|..+++.|++
T Consensus 7 ~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 7 TRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLG---YPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHHc
Confidence 44577888888889999999999998888899999999999999999999865 899999999999999999999999
Q ss_pred CCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHH
Q 010111 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQ 455 (518)
Q Consensus 384 g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~ 455 (518)
|+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++.|...++.+.+.+.
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~ 155 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIG 155 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999999999999987777777654
No 78
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=6e-28 Score=213.44 Aligned_cols=170 Identities=26% Similarity=0.377 Sum_probs=135.8
Q ss_pred hccCCCCeEEeeCCccccCccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEE
Q 010111 285 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKE 364 (518)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~ 364 (518)
+.++.+|..+.+.... .....+.+.+..++...|...|..++... ++++||||+++..++.+++.|...+ +.+..
T Consensus 9 ~~~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g---~~~~~ 83 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKG---VEAVA 83 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHT---CCEEE
T ss_pred ccccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcC---CcEEE
Confidence 3456667766665443 34467778888888889999999988865 4689999999999999999998876 89999
Q ss_pred ccccCChHHHHHHHHHHhcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecc-h
Q 010111 365 YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD-E 443 (518)
Q Consensus 365 ~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-e 443 (518)
+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +
T Consensus 84 lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~ 163 (191)
T 2p6n_A 84 IHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACD 163 (191)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSC
T ss_pred EeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999876 6
Q ss_pred hHHHHHHHHHHHhhcC
Q 010111 444 VCLVKRFKKLLQKADN 459 (518)
Q Consensus 444 ~~~~~~~~~~l~~~~~ 459 (518)
...++.+.+.++....
T Consensus 164 ~~~~~~l~~~l~~~~~ 179 (191)
T 2p6n_A 164 ESVLMDLKALLLEAKQ 179 (191)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHccC
Confidence 7778888888877543
No 79
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=1e-27 Score=208.75 Aligned_cols=149 Identities=26% Similarity=0.382 Sum_probs=135.4
Q ss_pred ccccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhc
Q 010111 304 PERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383 (518)
Q Consensus 304 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~ 383 (518)
+..+.+++..++...|...|..+++....+++||||+++..++.+++.|...+ +.+..+||++++.+|..+++.|++
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~hg~~~~~~r~~~~~~f~~ 79 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN---FPAIAIHRGMPQEERLSRYQQFKD 79 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcC---CCEEEEECCCCHHHHHHHHHHHHC
Confidence 34677888888889999999999998888899999999999999999999865 899999999999999999999999
Q ss_pred CCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecc-hhHHHHHHHHHHH
Q 010111 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD-EVCLVKRFKKLLQ 455 (518)
Q Consensus 384 g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-e~~~~~~~~~~l~ 455 (518)
|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +...++.+.+.+.
T Consensus 80 g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~ 152 (172)
T 1t5i_A 80 FQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFE 152 (172)
T ss_dssp TSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHC
T ss_pred CCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999876 4555666665543
No 80
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=1.1e-27 Score=210.86 Aligned_cols=153 Identities=29% Similarity=0.506 Sum_probs=128.9
Q ss_pred CccccceeeeecCCCCcHHHHHHHHHhc-CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHH
Q 010111 303 LPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381 (518)
Q Consensus 303 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f 381 (518)
.+..+.+.+..++...|...|..+++.. .+.++||||+++..++.+++.|...+ +.+..+||++++.+|..+++.|
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g---~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG---YACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTT---CCEEEEC--------CHHHHHH
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcC---CceEEEeCCCCHHHHHHHHHHH
Confidence 4567888888888899999999999876 47899999999999999999999865 8999999999999999999999
Q ss_pred hcCCceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHHhhc
Q 010111 382 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQKAD 458 (518)
Q Consensus 382 ~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~~~ 458 (518)
++|+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++.|...++.+.+.++...
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 169 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 169 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTT
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887754
No 81
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.95 E-value=3e-27 Score=213.11 Aligned_cols=148 Identities=30% Similarity=0.441 Sum_probs=135.2
Q ss_pred ccceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCC
Q 010111 306 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385 (518)
Q Consensus 306 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~ 385 (518)
.+.+..+.+....|...+..++....++++||||+++..++.+++.|...+ +.+..+||++++.+|..+++.|++|.
T Consensus 5 ~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~r~~~~~~f~~g~ 81 (212)
T 3eaq_A 5 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG---HPAQALHGDLSQGERERVLGAFRQGE 81 (212)
T ss_dssp CBCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHT---CCEEEECSSSCHHHHHHHHHHHHSSS
T ss_pred ceeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC---CCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 345666777889999999999998888999999999999999999998876 89999999999999999999999999
Q ss_pred ceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHHh
Q 010111 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQK 456 (518)
Q Consensus 386 ~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~ 456 (518)
.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++.|...++.+.+.++.
T Consensus 82 ~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~ 152 (212)
T 3eaq_A 82 VRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 152 (212)
T ss_dssp CCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSS
T ss_pred CeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999777777776643
No 82
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=1.6e-27 Score=206.46 Aligned_cols=147 Identities=27% Similarity=0.469 Sum_probs=129.9
Q ss_pred ccceeeeecCCCC-cHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcC
Q 010111 306 RLESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384 (518)
Q Consensus 306 ~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g 384 (518)
.+.+++..++... |...|..+++....+++||||+++..++.+++.|...+ +.+..+||++++.+|..+++.|++|
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g 79 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDK---FTVSAIYSDLPQQERDTIMKEFRSG 79 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CCEEEEECCCCHHHHHHHHHHHHcC
Confidence 4566777777666 99999999998888999999999999999999999865 8899999999999999999999999
Q ss_pred CceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHH
Q 010111 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQ 455 (518)
Q Consensus 385 ~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~ 455 (518)
+.+|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+.|.+++|+++.|...++.+.+.++
T Consensus 80 ~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~ 150 (165)
T 1fuk_A 80 SSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYS 150 (165)
T ss_dssp SCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSS
T ss_pred CCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999977777766554
No 83
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=208.69 Aligned_cols=149 Identities=28% Similarity=0.494 Sum_probs=132.9
Q ss_pred ccccceeeeecCCCC-cHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHh
Q 010111 304 PERLESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382 (518)
Q Consensus 304 ~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~ 382 (518)
+..+.++++.++... |...|..+++....+++||||+++..++.+++.|...+ +.+..+||++++.+|..+++.|+
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~R~~~~~~f~ 81 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDG---HQVSLLSGELTVEQRASIIQRFR 81 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTT---CCEEEECSSCCHHHHHHHHHHHH
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHH
Confidence 456778888777655 99999999998888899999999999999999999765 89999999999999999999999
Q ss_pred cCCceEEEEcCccccCCCCCCCCEEEEcCCC------CCccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHH
Q 010111 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQ 455 (518)
Q Consensus 383 ~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p------~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~ 455 (518)
+|+++|||||+++++|+|+|++++||+||+| .+...|+||+||+||.|+.|.+++|+++.+...++.+.+.++
T Consensus 82 ~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~ 160 (175)
T 2rb4_A 82 DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFN 160 (175)
T ss_dssp TTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred cCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhc
Confidence 9999999999999999999999999999999 889999999999999999999999999999877777766654
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.94 E-value=2.6e-26 Score=216.42 Aligned_cols=147 Identities=29% Similarity=0.445 Sum_probs=132.8
Q ss_pred cceeeeecCCCCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCc
Q 010111 307 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386 (518)
Q Consensus 307 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~ 386 (518)
+.++++.+....|...+..+++...++++||||+++..++.+++.|...+ +.+..+||+|++.+|..+++.|++|..
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g---~~~~~lhg~l~~~~r~~~~~~f~~g~~ 79 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG---HPAQALHGDMSQGERERVMGAFRQGEV 79 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTT---CCEEEECSCCCTHHHHHHHHHHHHTSC
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCC---CCEEEEeCCCCHHHHHHHHHHhhcCCc
Confidence 56778888899999999999998889999999999999999999998765 899999999999999999999999999
Q ss_pred eEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHHh
Q 010111 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQK 456 (518)
Q Consensus 387 ~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~~ 456 (518)
+|||||+++++|+|+|++++||+||+|.+...|+||+||+||.|+.|.|++|+++.+...++.+++.++.
T Consensus 80 ~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 80 RVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp CEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTC
T ss_pred eEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999998777777776654
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.88 E-value=1.1e-27 Score=208.58 Aligned_cols=146 Identities=32% Similarity=0.530 Sum_probs=132.7
Q ss_pred cceeeeecCC-CCcHHHHHHHHHhcCCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCC
Q 010111 307 LESYKLICES-KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385 (518)
Q Consensus 307 ~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~ 385 (518)
+.+++..++. ..|...|..+++...++++||||+++..++.+++.|...+ +.+..+||++++.+|..+++.|++|+
T Consensus 4 i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~r~~~~~~f~~g~ 80 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAG---INNCYLEGEMVQGKRNEAIKRLTEGR 80 (170)
Confidence 4555566666 7888889898888777899999999999999999998765 89999999999999999999999999
Q ss_pred ceEEEEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcEEEEeecchhHHHHHHHHHHH
Q 010111 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVKRFKKLLQ 455 (518)
Q Consensus 386 ~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~e~~~~~~~~~~l~ 455 (518)
++|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+.|.+++|+++.|...++.+.+.+.
T Consensus 81 ~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 150 (170)
T 2yjt_D 81 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIE 150 (170)
Confidence 9999999999999999999999999999999999999999999999999999999999877777766554
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.92 E-value=1.1e-24 Score=223.96 Aligned_cols=152 Identities=19% Similarity=0.137 Sum_probs=93.1
Q ss_pred CCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhc
Q 010111 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (518)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 125 (518)
.|| +|+|+|.+++..+.+.+..|+++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+.+..+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-------~~~~~~~~~t~~l~~q~~~~~~~l- 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-------KKKVLIFTRTHSQLDSIYKNAKLL- 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-------TCEEEEEESCHHHHHHHHHHHGGG-
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-------CCcEEEEcCCHHHHHHHHHHHHhc-
Confidence 477 89999999987776666678999999999999999999998753 348999999999999999888774
Q ss_pred cccCceEEEeecCCchHHH--HH-----------HhhcC---Cc-------c----ccCccCCchhHHHhhcCCCcEEEe
Q 010111 126 PAVGLSVGLAVGQSSIADE--IS-----------ELIKR---PK-------L----EAGICYDPEDVLQELQSAVDILVA 178 (518)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~--~~-----------~~~~~---~~-------~----~~~~~~~~~~~~~~~~~~~~Iiv~ 178 (518)
++++..+.|....-.. .. .+... .. . .....|. -...+.....++|+|+
T Consensus 75 ---~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cp-y~~~r~~~~~adiVV~ 150 (540)
T 2vl7_A 75 ---GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCP-YYSLRANLKDKDVIAM 150 (540)
T ss_dssp ---TCCEEEC----------------------------------------------------------CTTGGGCSEEEE
T ss_pred ---CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCCh-HHHHHHHhhcCCEEEE
Confidence 5666666554321000 00 00000 00 0 0000000 0112333456899999
Q ss_pred CChHHHHhHhcCC-C-----CCCCcccEEEEechhHhh
Q 010111 179 TPGRLMDHINATR-G-----FTLEHLCYLVVDETDRLL 210 (518)
Q Consensus 179 Tp~~l~~~l~~~~-~-----~~~~~~~~vViDEah~~~ 210 (518)
|++.|++...... . -.+...+++||||||.+.
T Consensus 151 n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 151 TYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp ETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred ChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 9999987553311 0 024567899999999983
No 87
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.90 E-value=7.7e-23 Score=211.17 Aligned_cols=153 Identities=20% Similarity=0.164 Sum_probs=110.3
Q ss_pred CCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcc
Q 010111 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (518)
Q Consensus 47 g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 126 (518)
|| +++|+|.+++..+...+..|+++++.||||+|||++|++|++. .+.+++|++||++|+.|+.+++..+..
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-------~~~~v~i~~pt~~l~~q~~~~~~~l~~ 72 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-------VKPKVLFVVRTHNEFYPIYRDLTKIRE 72 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-------HCSEEEEEESSGGGHHHHHHHHTTCCC
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-------CCCeEEEEcCCHHHHHHHHHHHHHHhh
Confidence 45 7999999988877766667999999999999999999999997 134899999999999999999999887
Q ss_pred ccCceEEEeecCCchH---------------------------------HHHHHhhcCCccccCccCCchhHHHhhcCCC
Q 010111 127 AVGLSVGLAVGQSSIA---------------------------------DEISELIKRPKLEAGICYDPEDVLQELQSAV 173 (518)
Q Consensus 127 ~~~~~v~~~~g~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (518)
..++++..+.|....- .......+. +... ..| +-...+.....+
T Consensus 73 ~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~-G~~~-~~C-py~~ar~~~~~a 149 (551)
T 3crv_A 73 KRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKD-GLQD-KFC-PYYSLLNSLYKA 149 (551)
T ss_dssp SSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHH-HHHH-TCC-HHHHHHHHGGGC
T ss_pred hcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHc-CCcC-CcC-ccHHHHhhhhcC
Confidence 7788888888754320 000000000 0000 000 111224445678
Q ss_pred cEEEeCChHHHHhHhcCCCCCC-CcccEEEEechhHhhh
Q 010111 174 DILVATPGRLMDHINATRGFTL-EHLCYLVVDETDRLLR 211 (518)
Q Consensus 174 ~Iiv~Tp~~l~~~l~~~~~~~~-~~~~~vViDEah~~~~ 211 (518)
+|+|+||+.|++...+.. +.+ ....++||||||.+.+
T Consensus 150 dIVV~~~~~l~~~~~~~~-~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 150 DVIALTYPYFFIDRYREF-IDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp SEEEEETHHHHCHHHHTT-SCCCSTTEEEEETTGGGGGG
T ss_pred CEEEeCchHhcCHHHHHh-cCCCcCCeEEEEecccchHH
Confidence 999999999998765422 322 4677999999999988
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.89 E-value=7.4e-23 Score=185.89 Aligned_cols=147 Identities=20% Similarity=0.215 Sum_probs=106.2
Q ss_pred hCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcc--cCCccEEEEcCcHHHHHH-HHHHH
Q 010111 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQ-VKDVF 121 (518)
Q Consensus 45 ~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~--~~~~~~lil~Pt~~La~Q-~~~~~ 121 (518)
......|+++|.++++.++. ++++++.+|||+|||+++++++...+.... ..+.++||++|+++|+.| +.+.+
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~ 103 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEF 103 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTH
T ss_pred ccCCCCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHH
Confidence 34455899999999988874 789999999999999999999998776532 235689999999999999 78888
Q ss_pred HHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCC-----CCCC
Q 010111 122 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-----FTLE 196 (518)
Q Consensus 122 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~-----~~~~ 196 (518)
..+... ++++..+.|+........ .+..+++|+|+||++|.+.+..... ..+.
T Consensus 104 ~~~~~~-~~~v~~~~g~~~~~~~~~---------------------~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~ 161 (216)
T 3b6e_A 104 QPFLKK-WYRVIGLSGDTQLKISFP---------------------EVVKSCDIIISTAQILENSLLNLENGEDAGVQLS 161 (216)
T ss_dssp HHHHTT-TSCEEECCC---CCCCHH---------------------HHHHHCSEEEEEHHHHHHHHHC-------CCCGG
T ss_pred HHHhcc-CceEEEEeCCcccchhHH---------------------hhccCCCEEEECHHHHHHHHhccCcccccccchh
Confidence 888665 678888888764322111 1223579999999999998876432 5578
Q ss_pred cccEEEEechhHhhhHhHHhH
Q 010111 197 HLCYLVVDETDRLLREAYQAW 217 (518)
Q Consensus 197 ~~~~vViDEah~~~~~~~~~~ 217 (518)
++++||+||||++.+.++...
T Consensus 162 ~~~~iIiDEah~~~~~~~~~~ 182 (216)
T 3b6e_A 162 DFSLIIIDECHHTNKEAVYNN 182 (216)
T ss_dssp GCSEEEETTC-------CHHH
T ss_pred cccEEEEECchhhccCCcHHH
Confidence 899999999999987654443
No 89
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.86 E-value=5.8e-21 Score=198.47 Aligned_cols=88 Identities=22% Similarity=0.170 Sum_probs=75.1
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccC
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 129 (518)
+|+|.|.+.+..+.+.+..|+++++.||||+|||++|++|++..+... +.+++|++||++|+.|+.+++..+....+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~---~~kvli~t~T~~l~~Qi~~el~~l~~~~~ 79 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER---KLKVLYLVRTNSQEEQVIKELRSLSSTMK 79 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH---TCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc---CCeEEEECCCHHHHHHHHHHHHHHhhccC
Confidence 689999999887776666799999999999999999999999987653 35899999999999999999999877667
Q ss_pred ceEEEeecCCc
Q 010111 130 LSVGLAVGQSS 140 (518)
Q Consensus 130 ~~v~~~~g~~~ 140 (518)
+++..+.|+.+
T Consensus 80 ~~~~~l~gr~~ 90 (620)
T 4a15_A 80 IRAIPMQGRVN 90 (620)
T ss_dssp CCEEECCCHHH
T ss_pred eEEEEEECCCc
Confidence 88888887654
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.85 E-value=8.9e-21 Score=174.05 Aligned_cols=143 Identities=20% Similarity=0.231 Sum_probs=104.9
Q ss_pred CCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcc-cCCccEEEEcCcHHHHHHHHHHHHHhcc
Q 010111 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFAAIAP 126 (518)
Q Consensus 48 ~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~-~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 126 (518)
...++++|.++++.+.. |+++++.||||||||.++.+++++.+.... ....++++++|+++|+.|+.+.+.....
T Consensus 59 ~~p~~~~q~~~i~~i~~----g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~ 134 (235)
T 3llm_A 59 LLPVKKFESEILEAISQ----NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERG 134 (235)
T ss_dssp TSGGGGGHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTT
T ss_pred cCChHHHHHHHHHHHhc----CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhc
Confidence 34689999999988764 899999999999999999999888765432 2345899999999999999888876432
Q ss_pred -ccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEec
Q 010111 127 -AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205 (518)
Q Consensus 127 -~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE 205 (518)
..+..++....... .....+++|+|+||++|.+.+.. .++++++||+||
T Consensus 135 ~~~~~~~g~~~~~~~--------------------------~~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDE 184 (235)
T 3llm_A 135 EEPGKSCGYSVRFES--------------------------ILPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDE 184 (235)
T ss_dssp CCTTSSEEEEETTEE--------------------------ECCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECC
T ss_pred cccCceEEEeechhh--------------------------ccCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEEC
Confidence 22333332111100 01124578999999999999876 378899999999
Q ss_pred hhHh-hhHhHH-hHHHHHHHh
Q 010111 206 TDRL-LREAYQ-AWLPTVLQL 224 (518)
Q Consensus 206 ah~~-~~~~~~-~~~~~i~~~ 224 (518)
||++ ++.++. ..+..+...
T Consensus 185 ah~~~~~~~~~~~~l~~i~~~ 205 (235)
T 3llm_A 185 IHERDINTDFLLVVLRDVVQA 205 (235)
T ss_dssp TTSCCHHHHHHHHHHHHHHHH
T ss_pred CccCCcchHHHHHHHHHHHhh
Confidence 9986 777776 455555544
No 91
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.84 E-value=5e-21 Score=181.02 Aligned_cols=128 Identities=20% Similarity=0.162 Sum_probs=101.6
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccC
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 129 (518)
+|+++|.++++.++. +++.++++|||+|||+++++++...+.++ ..++||++||++|+.|+.+.+.++....+
T Consensus 113 ~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~---~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY---EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC---SSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred CccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcC---CCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 799999999988775 57889999999999999988887766543 33799999999999999999999977666
Q ss_pred ceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhHh
Q 010111 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (518)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~~ 209 (518)
..+..++|+..... .....++|+|+||+++.... ...+.++++||+||||++
T Consensus 186 ~~~~~~~~~~~~~~------------------------~~~~~~~I~v~T~~~l~~~~----~~~~~~~~~vIiDEaH~~ 237 (282)
T 1rif_A 186 AMIKKIGGGASKDD------------------------KYKNDAPVVVGTWQTVVKQP----KEWFSQFGMMMNDECHLA 237 (282)
T ss_dssp GGEEECSTTCSSTT------------------------CCCTTCSEEEECHHHHTTSC----GGGGGGEEEEEEETGGGC
T ss_pred ceEEEEeCCCcchh------------------------hhccCCcEEEEchHHHHhhH----HHHHhhCCEEEEECCccC
Confidence 77777777754211 12245799999999875432 234678999999999999
Q ss_pred hhH
Q 010111 210 LRE 212 (518)
Q Consensus 210 ~~~ 212 (518)
.+.
T Consensus 238 ~~~ 240 (282)
T 1rif_A 238 TGK 240 (282)
T ss_dssp CHH
T ss_pred Ccc
Confidence 754
No 92
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.80 E-value=2.7e-19 Score=166.58 Aligned_cols=126 Identities=15% Similarity=0.228 Sum_probs=99.1
Q ss_pred CCCCcHHHHHHHHHhc--CCCcEEEEcCChhhHHHHHHHHhhc-CCCceeEEEccccCChHHHHHHHHHHhcC-Cce-EE
Q 010111 315 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQ-VL 389 (518)
Q Consensus 315 ~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~-~~~~~~v~~~hg~~~~~~r~~~~~~f~~g-~~~-vL 389 (518)
....|...+..++... .+.++||||++...++.+.+.|... + +.+..+||++++.+|..+++.|++| +++ +|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g---~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L 169 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELN---TEVPFLYGELSKKERDDIISKFQNNPSVKFIV 169 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHC---SCCCEECTTSCHHHHHHHHHHHHHCTTCCEEE
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcC---CcEEEEECCCCHHHHHHHHHHhcCCCCCCEEE
Confidence 4567888888888765 6789999999999999999999873 5 7889999999999999999999998 777 68
Q ss_pred EEcCccccCCCCCCCCEEEEcCCCCCccchhhhhhhcccCCCCCcE--EEEeecch
Q 010111 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC--FTLLHKDE 443 (518)
Q Consensus 390 vaT~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~~e 443 (518)
++|+++++|+|++++++||+||+|+++..|.||+||++|.|+.+.+ +.|+..+.
T Consensus 170 ~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 170 LSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp EECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTS
T ss_pred EehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 9999999999999999999999999999999999999999987764 55666553
No 93
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.78 E-value=5.7e-19 Score=161.66 Aligned_cols=117 Identities=28% Similarity=0.300 Sum_probs=93.9
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccC
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 129 (518)
.|+++|.+++..++. ++++++++|||+|||.+++.++... +.+++|++|+++|+.|+.+.+.++ +
T Consensus 93 ~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~-------~~~~liv~P~~~L~~q~~~~~~~~----~ 157 (237)
T 2fz4_A 93 SLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWKERLGIF----G 157 (237)
T ss_dssp CCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS-------CSCEEEEESSHHHHHHHHHHHGGG----C
T ss_pred CcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEeCCHHHHHHHHHHHHhC----C
Confidence 789999999887664 6779999999999999988877642 347999999999999999998884 6
Q ss_pred ce-EEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechhH
Q 010111 130 LS-VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (518)
Q Consensus 130 ~~-v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (518)
+. +..+.|+.. ...+|+|+||+.+....... ...+++||+||||+
T Consensus 158 ~~~v~~~~g~~~------------------------------~~~~i~v~T~~~l~~~~~~~----~~~~~llIiDEaH~ 203 (237)
T 2fz4_A 158 EEYVGEFSGRIK------------------------------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHH 203 (237)
T ss_dssp GGGEEEESSSCB------------------------------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEECSSC
T ss_pred CCeEEEEeCCCC------------------------------CcCCEEEEeHHHHHhhHHHh----cccCCEEEEECCcc
Confidence 66 777777653 24699999999987765531 24589999999999
Q ss_pred hhhHhHH
Q 010111 209 LLREAYQ 215 (518)
Q Consensus 209 ~~~~~~~ 215 (518)
+.+..+.
T Consensus 204 l~~~~~~ 210 (237)
T 2fz4_A 204 LPAESYV 210 (237)
T ss_dssp CCTTTHH
T ss_pred CCChHHH
Confidence 9765543
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.71 E-value=3.5e-08 Score=102.49 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=61.3
Q ss_pred HHHHHHHhC-CCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHH--HHhHHHHHHHhhhcccCCccEEEEcCcHHHH
Q 010111 38 RLKVALQNM-GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT--LSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (518)
Q Consensus 38 ~~~~~l~~~-g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT--~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La 114 (518)
.+...|..+ +-..-+++|.+|++.++ .++.+++.|++||||| ++++++.+..+.. ..+.++++++||..+|
T Consensus 136 ~~~~~l~~~~~~~~~~~~Q~~Ai~~~l----~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~--~~~~~vll~APTg~AA 209 (608)
T 1w36_D 136 LLAQTLDKLFPVSDEINWQKVAAAVAL----TRRISVISGGPGTGKTTTVAKLLAALIQMAD--GERCRIRLAAPTGKAA 209 (608)
T ss_dssp HHHHHHHTTCCCTTSCCHHHHHHHHHH----TBSEEEEECCTTSTHHHHHHHHHHHHHHTCS--SCCCCEEEEBSSHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh--cCCCeEEEEeCChhHH
Confidence 445555553 11123689999998877 3789999999999999 5566666654422 2356899999999999
Q ss_pred HHHHHHHHHhcccc
Q 010111 115 LQVKDVFAAIAPAV 128 (518)
Q Consensus 115 ~Q~~~~~~~~~~~~ 128 (518)
.++.+.+.......
T Consensus 210 ~~L~e~~~~~~~~l 223 (608)
T 1w36_D 210 ARLTESLGKALRQL 223 (608)
T ss_dssp HHHHHHHTHHHHHS
T ss_pred HHHHHHHHHHHhcC
Confidence 99988877655443
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.19 E-value=2.3e-06 Score=89.83 Aligned_cols=68 Identities=21% Similarity=0.194 Sum_probs=51.8
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
.|.+-|.+|+..++. ...-.||.||+|||||.+..-.+.+.+.. +.++|+++||..-++++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~----~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQ----GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEcCchHHHHHHHHHHHhc
Confidence 578899999887763 12346899999999999865544444433 458999999999999998887664
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.14 E-value=1.2e-05 Score=83.88 Aligned_cols=70 Identities=24% Similarity=0.243 Sum_probs=53.8
Q ss_pred CCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 48 ~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
+..+.+.|.+|+..++. +.-++|.||+|||||.+..- ++..+... .+.++++++||...+.++.+.+...
T Consensus 178 ~~~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~-~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSAT-IVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHH-HHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHH-HHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 34688999999887763 56789999999999987544 44444432 3458999999999999998887764
No 97
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.08 E-value=2.1e-05 Score=83.94 Aligned_cols=70 Identities=24% Similarity=0.246 Sum_probs=53.4
Q ss_pred CCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 48 ~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
+..+.+.|.+|+..++. +.-++|.||+|||||.+..- ++..+... .+.++|+++||...+.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~-~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSAT-IVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHH-HHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHH-HHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 34678999999887763 55689999999999987544 33344332 2348999999999999999888765
No 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.03 E-value=6.5e-06 Score=82.65 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=52.3
Q ss_pred hCCCCccchhhHHHHHHhhCCCCCCC-CEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHH
Q 010111 45 NMGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (518)
Q Consensus 45 ~~g~~~~~~~Q~~a~~~~~~~~~~~~-~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~ 121 (518)
.+.|..|++-|.+|+..++..+..++ .++|.|+.|||||.+. ..++..+.... ...+++++||...+..+.+.+
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~--~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG--ETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT--CCCEEEEESSHHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC--CceEEEecCcHHHHHHHHhhh
Confidence 35678899999999887654333333 8999999999999764 34555555432 236999999998877665543
No 99
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.02 E-value=2.8e-05 Score=82.85 Aligned_cols=70 Identities=24% Similarity=0.243 Sum_probs=53.6
Q ss_pred CCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 48 ~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
...+.+.|.+|+..++. +.-.+|.||+|||||.+..- ++..+... .+.++++++||...+.++.+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~-~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSAT-IVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHH-HHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHH-HHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 34678999999887764 56689999999999987443 44444432 3458999999999999988887764
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.81 E-value=5e-05 Score=77.97 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=48.7
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHH
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~ 121 (518)
.+++.|.+|+..++. ++.+++.|++|||||.+.. .++..+.. .+.++++++||...+..+.+..
T Consensus 189 ~L~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~-~l~~~l~~---~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLAG----HRLVVLTGGPGTGKSTTTK-AVADLAES---LGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TCCHHHHHHHHHHTT----CSEEEEECCTTSCHHHHHH-HHHHHHHH---TTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHH-HHHHHHHh---cCCeEEEecCcHHHHHHhHhhh
Confidence 688999999887763 6789999999999997633 34444443 3458999999999887766543
No 101
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.76 E-value=0.00035 Score=64.97 Aligned_cols=122 Identities=16% Similarity=0.080 Sum_probs=88.9
Q ss_pred CCCCcHHHHHHHHHhc--CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEc
Q 010111 315 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 392 (518)
Q Consensus 315 ~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT 392 (518)
....|+..|..++... .+.++|||++.....+.+.+++...+ +....+.|..... +.+ -.++.+.+.+.|
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~---~~y~RlDG~~~~~-~~k----~~~~~~~i~Llt 177 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNK---VHIKRYDGHSIKS-AAA----ANDFSCTVHLFS 177 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSS---CEEEESSSCCC------------CCSEEEEEEE
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCC---CceEeCCCCchhh-hhh----cccCCceEEEEE
Confidence 4688888888888754 46799999999999999999998755 8889999985442 211 124566776667
Q ss_pred CccccCCC-----CCCCCEEEEcCCCCCccch-hhhhhhcccCC----CCCcEEEEeecchh
Q 010111 393 DAMTRGMD-----VEGVNNVVNYDKPAYIKTY-IHRAGRTARAG----QLGRCFTLLHKDEV 444 (518)
Q Consensus 393 ~~~~~GiD-----ip~v~~VI~~~~p~s~~~~-~Qr~GR~gR~g----~~g~~~~~~~~~e~ 444 (518)
...+-|+| +...+.||.||..+++..= +|.+-|+.|.| +.-.++-+++..-.
T Consensus 178 sag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~Ti 239 (328)
T 3hgt_A 178 SEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSI 239 (328)
T ss_dssp SSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSH
T ss_pred CCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCH
Confidence 77777786 5689999999999999874 89888888863 34468888876655
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.25 E-value=0.00054 Score=72.05 Aligned_cols=72 Identities=19% Similarity=0.118 Sum_probs=55.7
Q ss_pred CccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcc
Q 010111 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (518)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 126 (518)
..+++-|.+|+.. .+..++|.|+.|||||.+.+--+...+.....+..++|++++|+..+.++.+.+..+..
T Consensus 8 ~~Ln~~Q~~av~~------~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVAA------PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHTC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHhC------CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 3688999998631 25789999999999999866655555544333445899999999999999999887743
No 103
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.10 E-value=0.00041 Score=67.76 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=33.4
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHH
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 123 (518)
+-.++.|+.|||||... .+.+.. .+.+|++||++++..+.+.+.+
T Consensus 162 ~v~~I~G~aGsGKTt~I----~~~~~~-----~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEI----LSRVNF-----EEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEEEECTTSCHHHHH----HHHCCT-----TTCEEEESCHHHHHHHHHHHTT
T ss_pred cEEEEEcCCCCCHHHHH----HHHhcc-----CCeEEEeCCHHHHHHHHHHhhh
Confidence 45678999999999862 332221 2579999999999888777643
No 104
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.00 E-value=0.0013 Score=69.40 Aligned_cols=82 Identities=18% Similarity=0.092 Sum_probs=60.2
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcccc-
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV- 128 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~- 128 (518)
.+++-|.+|+.. .+..++|.|+.|||||.+..--+...+...+....++|+++.|+..|.++.+.+.......
T Consensus 2 ~L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~ 75 (673)
T 1uaa_A 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKE 75 (673)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTT
T ss_pred CCCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCccc
Confidence 578999998643 2678999999999999986655555554433345689999999999999999988875432
Q ss_pred --CceEEEeec
Q 010111 129 --GLSVGLAVG 137 (518)
Q Consensus 129 --~~~v~~~~g 137 (518)
++.+..+++
T Consensus 76 ~~~~~v~Tfhs 86 (673)
T 1uaa_A 76 ARGLMISTFHT 86 (673)
T ss_dssp TTTSEEEEHHH
T ss_pred ccCCEEEeHHH
Confidence 355554443
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.86 E-value=0.0034 Score=53.81 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=16.9
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
.|+.+++.||+|+|||..+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 37889999999999998644
No 106
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.79 E-value=0.0026 Score=67.49 Aligned_cols=82 Identities=18% Similarity=0.135 Sum_probs=59.2
Q ss_pred CccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccc-
Q 010111 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA- 127 (518)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~- 127 (518)
..|++-|.+|+.. .+..++|.|+.|||||.+..--+...+........++|+++.|+..|.++.+.+..+...
T Consensus 10 ~~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~ 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGA 83 (724)
T ss_dssp TTSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGG
T ss_pred hhCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhccc
Confidence 4688999998643 257899999999999998665555555443334458999999999999999888776432
Q ss_pred -cCceEEEee
Q 010111 128 -VGLSVGLAV 136 (518)
Q Consensus 128 -~~~~v~~~~ 136 (518)
.++.+..++
T Consensus 84 ~~~~~v~Tfh 93 (724)
T 1pjr_A 84 AEDVWISTFH 93 (724)
T ss_dssp GTTSEEEEHH
T ss_pred ccCcEEeeHH
Confidence 234555444
No 107
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.78 E-value=0.0031 Score=54.49 Aligned_cols=39 Identities=18% Similarity=0.095 Sum_probs=27.0
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcH
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~ 111 (518)
|+=.++.+|+|+|||..++- ++.++. ..+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~-~a~r~~---~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIR-RIRRAK---IAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHH-HHHHHH---HTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHH-HHHHHH---HCCCEEEEEEecc
Confidence 56678899999999987443 333332 2355899998884
No 108
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.71 E-value=0.0014 Score=58.07 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=26.6
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcH
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~ 111 (518)
|.-+++.|++|+|||..++-. +.++.. .+.+++++.|..
T Consensus 12 G~i~litG~mGsGKTT~ll~~-~~r~~~---~g~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRR-LHRLEY---ADVKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHH-HHHHHH---TTCCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHHHHHH-HHHHHh---cCCEEEEEEecc
Confidence 566788999999999874443 333332 344788887764
No 109
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.68 E-value=0.00051 Score=59.28 Aligned_cols=39 Identities=21% Similarity=0.126 Sum_probs=26.1
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcH
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~ 111 (518)
|+-.++.||+|+|||..++--+ .++.. .+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~-~~~~~---~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFV-EIYKL---GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHH-HHHHH---TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHH-HHHHH---CCCeEEEEeecc
Confidence 5667899999999998744333 33322 234788888884
No 110
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.56 E-value=0.026 Score=54.40 Aligned_cols=71 Identities=14% Similarity=0.016 Sum_probs=52.9
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcc
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 126 (518)
.|+|+|...+..+- ..+-+++..+-+.|||.+....++..+... ++..+++++|++.-|..+.+.+..+..
T Consensus 163 ~L~p~Qk~il~~l~----~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~--~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFN--KDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHH----HSSEEEEEECSSSCHHHHHHHHHHHHHHSS--SSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhc----cCcEEEEEEcCcCChhHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 78999999876542 135588999999999987666555433332 455799999999999888877776654
No 111
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.44 E-value=0.004 Score=54.22 Aligned_cols=40 Identities=20% Similarity=0.123 Sum_probs=26.4
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHH
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~ 112 (518)
|.-.++.+|.|+|||...+- .+.++.. .+.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr-~~~r~~~---~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIR-RLRRGIY---AKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHH-HHHHHHH---TTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHH-HHHHHHH---cCCceEEEEeccC
Confidence 55668999999999976333 3333333 3457999998764
No 112
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.37 E-value=0.0093 Score=56.81 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=28.6
Q ss_pred cchhhHHHHHHhhCCCCCC---CCEEEECCCCchHHHHhHH
Q 010111 51 LFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~---~~~li~apTGsGKT~~~~l 88 (518)
++|||.+++..+...+..| +.+++.||+|+|||..+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 5799999987766544444 3489999999999987554
No 113
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.26 E-value=0.0076 Score=62.27 Aligned_cols=73 Identities=14% Similarity=0.018 Sum_probs=55.0
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcccc
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 128 (518)
.|+|+|...+..+- ..+.+++..+-|+|||.+....++-.+... ++..+++++|++..|..+.+.++.+....
T Consensus 163 ~l~p~Q~~i~~~l~----~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~--~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFN--KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHH----HCSEEEEEECSSSCHHHHHHHHHHHHHHTS--SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhc----cccEEEEEEcCccChHHHHHHHHHHHHHhC--CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 57999999876542 246789999999999987665555444433 34579999999999999888888776543
No 114
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.16 E-value=0.0065 Score=53.06 Aligned_cols=40 Identities=23% Similarity=0.089 Sum_probs=26.5
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHH
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~ 112 (518)
|+=.++.++.|+|||..++-.+.+.. ..+.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~----~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQ----FAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH----HTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH----HCCCEEEEEEeccC
Confidence 45557899999999987444333332 23558999998864
No 115
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.02 E-value=0.0057 Score=52.49 Aligned_cols=38 Identities=18% Similarity=0.120 Sum_probs=26.0
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCc
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt 110 (518)
++=.++.+|+|+|||.-.+-.+- +... .+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~-n~~~---~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVR-RFQI---AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH-HHHH---TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHH-HHHH---cCCeEEEEccc
Confidence 56678999999999965333333 2222 34589999887
No 116
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.01 E-value=0.01 Score=66.80 Aligned_cols=69 Identities=23% Similarity=0.234 Sum_probs=53.6
Q ss_pred CccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcc--cCCccEEEEcCcHHHHHHHHHHHHH
Q 010111 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQVKDVFAA 123 (518)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~--~~~~~~lil~Pt~~La~Q~~~~~~~ 123 (518)
..+++-|.+++.. .+++++|.|..|||||.+.+--++..+..+. ....+++++++|+..|..+.+.+..
T Consensus 9 ~~~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 9 STWTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp -CCCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 3789999998532 3789999999999999996666666665531 2445899999999999988877766
No 117
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.025 Score=53.02 Aligned_cols=28 Identities=14% Similarity=0.068 Sum_probs=20.8
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhh
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSN 96 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~ 96 (518)
.+.++++.||+|+|||.+.-. ++..+..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~-v~~~L~~ 71 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVND-VMDELIT 71 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHH-HHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHHHH
Confidence 457899999999999987444 4455543
No 118
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.89 E-value=0.045 Score=51.72 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=23.2
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~ 108 (518)
+..+++.||+|+|||..+-. +...+... +..++++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~-i~~~~~~~---~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQA-AGNEAKKR---GYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHH-HHHHHHHT---TCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHHHC---CCEEEEEE
Confidence 57899999999999986443 33333322 23455554
No 119
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.76 E-value=0.011 Score=51.64 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=15.8
Q ss_pred CCEEEECCCCchHHHHhH
Q 010111 70 RDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (518)
..+++.||+|+|||..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 789999999999998644
No 120
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.48 E-value=0.028 Score=49.51 Aligned_cols=40 Identities=20% Similarity=0.201 Sum_probs=27.9
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHH
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~ 112 (518)
|+-.++.|+.|+|||..++-.+.+. ...+.+++++.|...
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~----~~~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRF----QIAQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH----HTTTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHH----HHCCCeEEEEeecCC
Confidence 5667889999999998744433333 234568999988753
No 121
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.03 E-value=0.04 Score=56.73 Aligned_cols=59 Identities=17% Similarity=0.189 Sum_probs=42.3
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHH
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~ 117 (518)
.+|.-|.+|+..++... . ...++.|+-|.|||.+..+.+- .+.. .++|.+|+.+-+..+
T Consensus 175 ~~T~dQ~~al~~~~~~~-~-~~~vlta~RGRGKSa~lG~~~a-~~~~------~~~vtAP~~~a~~~l 233 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMP-P-GVAAVTAARGRGKSALAGQLIS-RIAG------RAIVTAPAKASTDVL 233 (671)
T ss_dssp SCCHHHHHHHHHHTTCC-S-EEEEEEECTTSSHHHHHHHHHH-HSSS------CEEEECSSCCSCHHH
T ss_pred CCCHHHHHHHHHHHHhh-h-CeEEEecCCCCCHHHHHHHHHH-HHHh------CcEEECCCHHHHHHH
Confidence 67889999998877643 2 3478999999999976555443 3321 469999998865543
No 122
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.95 E-value=0.12 Score=51.17 Aligned_cols=38 Identities=24% Similarity=0.174 Sum_probs=23.7
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~ 108 (518)
...+++.||+|+|||..+-. +...+... .++..++++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~a-ia~~l~~~-~~~~~v~~v~ 167 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQS-IGNYVVQN-EPDLRVMYIT 167 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHH-HHHHHHHH-CCSSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHh-CCCCeEEEee
Confidence 46899999999999986443 33333322 2234556654
No 123
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.71 E-value=0.17 Score=44.20 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=15.1
Q ss_pred CCEEEECCCCchHHHHhH
Q 010111 70 RDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (518)
..+++.||+|+|||..+.
T Consensus 39 ~~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAI 56 (226)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 459999999999998643
No 124
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.69 E-value=0.077 Score=56.29 Aligned_cols=81 Identities=12% Similarity=0.156 Sum_probs=68.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc-cccCCCCCCCCEEEE
Q 010111 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVVN 409 (518)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~GiDip~v~~VI~ 409 (518)
+.+++|.++++.-+...++.+.... ..++.+..+||+++..+|...++.+.+|..+|+|+|.. +...+++.++++||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 5799999999999998888887542 34589999999999999999999999999999999975 355678888888886
Q ss_pred cCC
Q 010111 410 YDK 412 (518)
Q Consensus 410 ~~~ 412 (518)
-..
T Consensus 497 DEa 499 (780)
T 1gm5_A 497 DEQ 499 (780)
T ss_dssp ESC
T ss_pred ccc
Confidence 543
No 125
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.21 E-value=0.1 Score=48.69 Aligned_cols=19 Identities=16% Similarity=-0.165 Sum_probs=15.4
Q ss_pred CCEEEECCCCchHHHHhHH
Q 010111 70 RDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l 88 (518)
...++.||.|+|||..+..
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~ 37 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLE 37 (305)
T ss_dssp EEEEEECSSSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4689999999999976443
No 126
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.93 E-value=0.19 Score=48.44 Aligned_cols=20 Identities=25% Similarity=0.217 Sum_probs=16.8
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
.+..+++.||+|+|||..+-
T Consensus 43 ~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHH
Confidence 35789999999999998644
No 127
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.89 E-value=0.2 Score=48.96 Aligned_cols=82 Identities=17% Similarity=0.213 Sum_probs=67.3
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCccc----cCCCCCCCCE
Q 010111 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT----RGMDVEGVNN 406 (518)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~----~GiDip~v~~ 406 (518)
.+.++||.+|++.-+..+++.+...+..++.+..+||+.+..++...++.+..|..+|+|+|.-.- .-++...+++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 567899999999999999999988654568999999999999999999999999999999996421 1145567888
Q ss_pred EEEcCC
Q 010111 407 VVNYDK 412 (518)
Q Consensus 407 VI~~~~ 412 (518)
||.-..
T Consensus 143 iViDEa 148 (414)
T 3oiy_A 143 VFVDDV 148 (414)
T ss_dssp EEESCH
T ss_pred EEEeCh
Confidence 876554
No 128
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.59 E-value=0.34 Score=45.56 Aligned_cols=14 Identities=36% Similarity=0.321 Sum_probs=12.3
Q ss_pred cccEEEEechhHhh
Q 010111 197 HLCYLVVDETDRLL 210 (518)
Q Consensus 197 ~~~~vViDEah~~~ 210 (518)
..++|++||+|.+.
T Consensus 105 ~~~vliiDEi~~l~ 118 (324)
T 3u61_B 105 RQKVIVIDEFDRSG 118 (324)
T ss_dssp CEEEEEEESCCCGG
T ss_pred CCeEEEEECCcccC
Confidence 57899999999886
No 129
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=93.53 E-value=0.73 Score=38.20 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=56.4
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
..++||.++++.-+..+.+.+... ++.+..++|+.+...+...+.. ......+|+|+|
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~-----------------f~~g~~~vlv~T- 92 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNE-----------------FKRGEYRYLVAT- 92 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHH-----------------HHTTSCSEEEEC-
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHH-----------------HHcCCCeEEEEC-
Confidence 347999999999999999888875 7889999999876665433211 123457899999
Q ss_pred hHHHHhHhcCCCCCCCcccEEEEech
Q 010111 181 GRLMDHINATRGFTLEHLCYLVVDET 206 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vViDEa 206 (518)
+.+. .++++.++++||.-+.
T Consensus 93 ----~~~~--~Gld~~~~~~Vi~~~~ 112 (163)
T 2hjv_A 93 ----DVAA--RGIDIENISLVINYDL 112 (163)
T ss_dssp ----GGGT--TTCCCSCCSEEEESSC
T ss_pred ----Chhh--cCCchhcCCEEEEeCC
Confidence 3333 3577888888886443
No 130
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.50 E-value=0.26 Score=43.55 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=27.6
Q ss_pred HHHhhC-CCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc
Q 010111 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (518)
Q Consensus 59 ~~~~~~-~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~ 108 (518)
++.++. .+..|.-+++.||+|+|||..+...+...... +.+++++.
T Consensus 12 Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~----~~~v~~~~ 58 (235)
T 2w0m_A 12 FDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD----GDPCIYVT 58 (235)
T ss_dssp HHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH----TCCEEEEE
T ss_pred HHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC----CCeEEEEE
Confidence 344443 34467888999999999997544333222222 22566664
No 131
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.25 E-value=0.31 Score=47.01 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=16.0
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
.+.+++.||+|+|||..+.
T Consensus 45 ~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4679999999999998643
No 132
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.25 E-value=0.1 Score=49.06 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=14.8
Q ss_pred CEEEECCCCchHHHHhH
Q 010111 71 DLCINSPTGSGKTLSYA 87 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (518)
++++.||+|+|||..+-
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 59999999999998644
No 133
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.94 E-value=0.61 Score=44.35 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=14.9
Q ss_pred CCEEEECCCCchHHHHhH
Q 010111 70 RDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (518)
.++++.||+|+|||..+-
T Consensus 37 ~~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 349999999999998643
No 134
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=92.84 E-value=0.99 Score=44.84 Aligned_cols=52 Identities=15% Similarity=0.168 Sum_probs=40.0
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhcc
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 126 (518)
.+....+.+-||||||++..- +++. .+..+|||+|+...|.|+++.++.+..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~-l~~~------~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAE-IAER------HAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHH-HHHH------SSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHHH-HHHH------hCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 366789999999999986332 2221 122589999999999999999999865
No 135
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=92.70 E-value=0.93 Score=37.62 Aligned_cols=77 Identities=13% Similarity=0.188 Sum_probs=55.2
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
..++||.++++.-+..+.+.+... ++.+..++|+.+...+...+.. ......+|+|+|
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~-----------------f~~g~~~vlv~T- 87 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKE-----------------FRSGSSRILIST- 87 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHH-----------------HHTTSCSEEEEE-
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHH-----------------HHcCCCEEEEEc-
Confidence 347999999999999988888774 6788999999886655432211 123457899999
Q ss_pred hHHHHhHhcCCCCCCCcccEEEEec
Q 010111 181 GRLMDHINATRGFTLEHLCYLVVDE 205 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vViDE 205 (518)
+.+. .++++.++++||.-+
T Consensus 88 ----~~~~--~G~d~~~~~~Vi~~~ 106 (165)
T 1fuk_A 88 ----DLLA--RGIDVQQVSLVINYD 106 (165)
T ss_dssp ----GGGT--TTCCCCSCSEEEESS
T ss_pred ----Chhh--cCCCcccCCEEEEeC
Confidence 3333 357788888888643
No 136
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=92.66 E-value=0.7 Score=38.86 Aligned_cols=75 Identities=19% Similarity=0.218 Sum_probs=54.7
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
..++||.++++..+..+++.+... ++.+..++|+.+...+...+.. ......+|+|+|
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~-----------------f~~g~~~vLvaT- 91 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQR-----------------FRDGKEKVLITT- 91 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHH-----------------HHTTSCSEEEEC-
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHH-----------------HHcCCCeEEEEe-
Confidence 448999999999999888888764 7889999999887665433211 123457999999
Q ss_pred hHHHHhHhcCCCCCCCcccEEEE
Q 010111 181 GRLMDHINATRGFTLEHLCYLVV 203 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vVi 203 (518)
+.+. .++++..+++||.
T Consensus 92 ----~~~~--~Gid~~~~~~Vi~ 108 (175)
T 2rb4_A 92 ----NVCA--RGIDVKQVTIVVN 108 (175)
T ss_dssp ----CSCC--TTTCCTTEEEEEE
T ss_pred ----cchh--cCCCcccCCEEEE
Confidence 2223 3577888998884
No 137
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=92.41 E-value=0.9 Score=39.63 Aligned_cols=75 Identities=24% Similarity=0.216 Sum_probs=55.4
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
+.++||.++++.-+..+.+.+... ++.+..++|+.+...+...+.. ......+|+|+|
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~-----------------f~~g~~~vlvaT- 88 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGA-----------------FRQGEVRVLVAT- 88 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHH-----------------HHSSSCCEEEEC-
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHH-----------------HHCCCCeEEEec-
Confidence 348999999999999988888775 7889999999887665433221 223457899999
Q ss_pred hHHHHhHhcCCCCCCCcccEEEE
Q 010111 181 GRLMDHINATRGFTLEHLCYLVV 203 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vVi 203 (518)
+.+. .++++.++++||.
T Consensus 89 ----~~~~--~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 89 ----DVAA--RGLDIPQVDLVVH 105 (212)
T ss_dssp ----TTTT--CSSSCCCBSEEEE
T ss_pred ----Chhh--cCCCCccCcEEEE
Confidence 3333 3578888998884
No 138
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=92.35 E-value=0.85 Score=39.03 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=55.6
Q ss_pred ccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCCh
Q 010111 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (518)
Q Consensus 102 ~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~ 181 (518)
.++||.++++.-+..+.+.+... ++.+..++|+.+...+...+.. ......+|+|+|
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~-----------------F~~g~~~vLvaT-- 111 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEA-----------------FREGKKDVLVAT-- 111 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHH-----------------HHHTSCSEEEEC--
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHH-----------------HhcCCCEEEEEc--
Confidence 47999999999999998888775 7889999999876655433211 123457899999
Q ss_pred HHHHhHhcCCCCCCCcccEEEEec
Q 010111 182 RLMDHINATRGFTLEHLCYLVVDE 205 (518)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~vViDE 205 (518)
+.+.. ++++.++++||.-+
T Consensus 112 ---~~~~~--Gldi~~v~~VI~~d 130 (191)
T 2p6n_A 112 ---DVASK--GLDFPAIQHVINYD 130 (191)
T ss_dssp ---HHHHT--TCCCCCCSEEEESS
T ss_pred ---Cchhc--CCCcccCCEEEEeC
Confidence 34443 57788888888643
No 139
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.18 E-value=0.54 Score=45.94 Aligned_cols=36 Identities=19% Similarity=0.096 Sum_probs=22.5
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~ 108 (518)
+.-+++.+++|+|||.++..-+ ..+.. .+.+++++.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA-~~l~~---~G~kVllv~ 132 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLA-YFYKK---RGYKVGLVA 132 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHH-HHHHH---TTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHH-HHHHH---cCCeEEEEe
Confidence 3457889999999998654432 23333 234666654
No 140
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=92.12 E-value=0.95 Score=37.93 Aligned_cols=77 Identities=13% Similarity=0.126 Sum_probs=55.7
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
..++||.++++.-+..+++.+... ++.+..++|+.+...+...+. .......+|+|+|.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~-----------------~f~~g~~~vLvaT~ 89 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQ-----------------QFKDFQRRILVATN 89 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHH-----------------HHHTTSCSEEEESS
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHH-----------------HHHCCCCcEEEECC
Confidence 347999999999999998888775 788899999987666543321 12234579999993
Q ss_pred hHHHHhHhcCCCCCCCcccEEEEec
Q 010111 181 GRLMDHINATRGFTLEHLCYLVVDE 205 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vViDE 205 (518)
.+. .++++..+++||.-+
T Consensus 90 -----~~~--~Gldi~~~~~Vi~~d 107 (172)
T 1t5i_A 90 -----LFG--RGMDIERVNIAFNYD 107 (172)
T ss_dssp -----CCS--TTCCGGGCSEEEESS
T ss_pred -----chh--cCcchhhCCEEEEEC
Confidence 222 357788888888644
No 141
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.08 E-value=1.1 Score=41.93 Aligned_cols=57 Identities=14% Similarity=-0.044 Sum_probs=31.9
Q ss_pred CCCCCEEEECCCCchHHHHhHHHHHHHhhhc--ccCCccEEEEcCcHHH-HHHHHHHHHH
Q 010111 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPTRDL-ALQVKDVFAA 123 (518)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~~l~~~~~l~~~--~~~~~~~lil~Pt~~L-a~Q~~~~~~~ 123 (518)
..|.-+++.||+|+|||..++-.+.+..... ...+.+++|+.-...+ ..++.+.+..
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457789999999999986554444322210 0113467888644322 3344444444
No 142
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.02 E-value=0.65 Score=44.58 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=16.4
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
+..+++.||+|+|||..+-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5789999999999998643
No 143
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=91.93 E-value=0.5 Score=52.63 Aligned_cols=80 Identities=11% Similarity=0.231 Sum_probs=66.3
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhc-CCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcC-ccccCCCCCCCCEEE
Q 010111 331 GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVV 408 (518)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~-~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~GiDip~v~~VI 408 (518)
.+.+++|.++++..+...++.+... ...++.+..++|..+..++...++.+.+|..+|+|+|. .+...+.+.++++||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 4568999999999999998888753 33457899999999999999999999999999999995 455667888888777
Q ss_pred Ec
Q 010111 409 NY 410 (518)
Q Consensus 409 ~~ 410 (518)
.-
T Consensus 731 iD 732 (1151)
T 2eyq_A 731 VD 732 (1151)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 144
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=91.62 E-value=0.32 Score=53.91 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=68.0
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCcc-----ccCCCCCCCC
Q 010111 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM-----TRGMDVEGVN 405 (518)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~-----~~GiDip~v~ 405 (518)
.+.++||.+|++.-+..+++.+..++..++.+..+||+.+..+|...++.+..|..+|+|+|.-. .. +++..++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~ 198 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFD 198 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCS
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcC
Confidence 46789999999999999999999866566899999999999999999999999999999999632 22 4556788
Q ss_pred EEEEcCC
Q 010111 406 NVVNYDK 412 (518)
Q Consensus 406 ~VI~~~~ 412 (518)
+||.-..
T Consensus 199 ~lViDEa 205 (1104)
T 4ddu_A 199 FVFVDDV 205 (1104)
T ss_dssp EEEESCH
T ss_pred EEEEeCC
Confidence 8886554
No 145
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=91.44 E-value=0.54 Score=40.06 Aligned_cols=93 Identities=23% Similarity=0.169 Sum_probs=52.3
Q ss_pred CchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCc
Q 010111 79 GSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 158 (518)
Q Consensus 79 GsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~ 158 (518)
...|... +.-++.. . ..+.++||.++++.-+..+.+.+... ++.+..++|+.+...+...+
T Consensus 29 ~~~K~~~-L~~ll~~---~-~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~---------- 89 (185)
T 2jgn_A 29 ESDKRSF-LLDLLNA---T-GKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEAL---------- 89 (185)
T ss_dssp GGGHHHH-HHHHHHH---C--CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHH----------
T ss_pred cHHHHHH-HHHHHHh---c-CCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHH----------
Confidence 4567543 3333332 1 23458999999999999988888774 78889999987654432211
Q ss_pred cCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEe
Q 010111 159 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204 (518)
Q Consensus 159 ~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViD 204 (518)
........+|+|+| +.+. .++++..+++||.=
T Consensus 90 -------~~f~~g~~~vLvaT-----~~~~--~Gldi~~~~~VI~~ 121 (185)
T 2jgn_A 90 -------HQFRSGKSPILVAT-----AVAA--RGLDISNVKHVINF 121 (185)
T ss_dssp -------HHHHHTSSSEEEEE-----C--------CCCSBSEEEES
T ss_pred -------HHHHcCCCeEEEEc-----Chhh--cCCCcccCCEEEEe
Confidence 11223457899999 2222 34677788888863
No 146
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.04 E-value=0.15 Score=41.62 Aligned_cols=20 Identities=10% Similarity=0.233 Sum_probs=17.2
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
.+.++++.+|+|+|||..+-
T Consensus 23 ~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHH
Confidence 56899999999999998643
No 147
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=90.67 E-value=0.93 Score=44.33 Aligned_cols=60 Identities=22% Similarity=0.070 Sum_probs=35.2
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc--CcHHHHHHHHHHHHHhccccCceEEEee
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSVGLAV 136 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~--Pt~~La~Q~~~~~~~~~~~~~~~v~~~~ 136 (518)
.-+++++++|+|||.++.--+ ..+.. .+.+++++. |.|.-+ .+.+..++...++.+....
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA-~~l~~---~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~ 162 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLA-RYFQK---RGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNP 162 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHH-HHHHT---TTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCT
T ss_pred eEEEEECcCCCCHHHHHHHHH-HHHHH---CCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecC
Confidence 457889999999998754432 33333 244666664 444433 3445555555566655443
No 148
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=89.52 E-value=2.4 Score=41.05 Aligned_cols=76 Identities=21% Similarity=0.178 Sum_probs=56.2
Q ss_pred CCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeC
Q 010111 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (518)
Q Consensus 100 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~T 179 (518)
.+.++||.++++.-+..+++.+... ++.+..++|+.+...+...+.. ......+|+|||
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~-----------------f~~g~~~vlvaT 333 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQ-----------------FRSGKSPILVAT 333 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHH-----------------HHHTSSCEEEEC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHH-----------------HHcCCCCEEEEC
Confidence 4557999999999999998888774 7889999999886665433211 123457899999
Q ss_pred ChHHHHhHhcCCCCCCCcccEEEE
Q 010111 180 PGRLMDHINATRGFTLEHLCYLVV 203 (518)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vVi 203 (518)
+.+.. ++++.++++||.
T Consensus 334 -----~~~~~--Gidip~v~~Vi~ 350 (417)
T 2i4i_A 334 -----AVAAR--GLDISNVKHVIN 350 (417)
T ss_dssp -----HHHHT--TSCCCCEEEEEE
T ss_pred -----Chhhc--CCCcccCCEEEE
Confidence 44444 578888998885
No 149
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.40 E-value=0.64 Score=44.51 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=14.9
Q ss_pred CCEEEECCCCchHHHHhH
Q 010111 70 RDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (518)
..+++.||+|+|||..+-
T Consensus 39 ~~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp SEEEEESCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357999999999998644
No 150
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=89.26 E-value=3.6 Score=41.85 Aligned_cols=100 Identities=14% Similarity=0.120 Sum_probs=66.4
Q ss_pred chHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCcc
Q 010111 80 SGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159 (518)
Q Consensus 80 sGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~ 159 (518)
..+....+..+...+... ..+.++||.++|+.-+..+++.+...... ++.+..++|+.+...+...+.
T Consensus 319 ~~~~~~~~~~l~~~~~~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~v~~~h~~~~~~~R~~~~~---------- 386 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLVK---------- 386 (563)
T ss_dssp THHHHHHHHHHHHHHHHT-TTCCEEEEECSCHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHHH----------
T ss_pred HhhHHHHHHHHHHHHhhc-CCCCcEEEEcCcHHHHHHHHHHHHHhccC-CceEEEecCCCCHHHHHHHHH----------
Confidence 344444333344444332 34558999999999999999998876442 678899999988666543221
Q ss_pred CCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEec
Q 010111 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205 (518)
Q Consensus 160 ~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE 205 (518)
.......+|+||| +.+.. ++++.++++||.-.
T Consensus 387 -------~f~~g~~~vLvaT-----~~~~~--GiDip~v~~VI~~~ 418 (563)
T 3i5x_A 387 -------RFKKDESGILVCT-----DVGAR--GMDFPNVHEVLQIG 418 (563)
T ss_dssp -------HHHHCSSEEEEEC-----GGGTS--SCCCTTCCEEEEES
T ss_pred -------HHhcCCCCEEEEc-----chhhc--CCCcccCCEEEEEC
Confidence 1223457899999 34443 57888899888655
No 151
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=89.10 E-value=2.7 Score=39.29 Aligned_cols=25 Identities=24% Similarity=0.097 Sum_probs=18.7
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHH
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQ 92 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~ 92 (518)
.|.-+++.||+|+|||..++-.+.+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3566899999999999865544443
No 152
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.95 E-value=0.37 Score=55.99 Aligned_cols=49 Identities=18% Similarity=0.096 Sum_probs=33.4
Q ss_pred HHHhhC--CCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcH
Q 010111 59 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (518)
Q Consensus 59 ~~~~~~--~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~ 111 (518)
++.++. -+..++++++.+|+|+|||..+...+.+...+ +.+++|+..--
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~----G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAEH 1465 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT----TCCEEEECTTS
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCcEEEEEccc
Confidence 444443 23457899999999999998766655554433 44788887553
No 153
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.84 E-value=0.98 Score=42.09 Aligned_cols=17 Identities=35% Similarity=0.417 Sum_probs=14.6
Q ss_pred CEEEECCCCchHHHHhH
Q 010111 71 DLCINSPTGSGKTLSYA 87 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (518)
++++.||+|+|||..+.
T Consensus 44 ~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVH 60 (323)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 49999999999998644
No 154
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=88.81 E-value=0.15 Score=41.42 Aligned_cols=18 Identities=11% Similarity=0.041 Sum_probs=16.0
Q ss_pred CCCCEEEECCCCchHHHH
Q 010111 68 FERDLCINSPTGSGKTLS 85 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (518)
.+.++++.+|+|+|||..
T Consensus 26 ~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp CSSCEEEEEETTCCHHHH
T ss_pred CCCcEEEECCCCccHHHH
Confidence 467899999999999975
No 155
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.80 E-value=0.45 Score=41.08 Aligned_cols=48 Identities=13% Similarity=0.114 Sum_probs=29.4
Q ss_pred HHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHh
Q 010111 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (518)
Q Consensus 37 ~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~ 86 (518)
..|.+.|+-.|+ .+... ..++...+..+-..+.+++.+|+|+|||..+
T Consensus 28 ~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 28 RPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 466666665554 33333 3444444443323345889999999999764
No 156
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=88.47 E-value=1.1 Score=39.54 Aligned_cols=77 Identities=8% Similarity=0.134 Sum_probs=52.2
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc-----c-ccCCCCCCC
Q 010111 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----M-TRGMDVEGV 404 (518)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~-~~GiDip~v 404 (518)
.+.++||.++++..+..+++.+......+..+..++|+.+...+... +. ...+|+|+|.- + ...+++..+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 45689999999999999999998876666888888988876543333 23 34799999952 1 234567778
Q ss_pred CEEEEcC
Q 010111 405 NNVVNYD 411 (518)
Q Consensus 405 ~~VI~~~ 411 (518)
++||.-.
T Consensus 169 ~~lViDE 175 (228)
T 3iuy_A 169 TYLVIDE 175 (228)
T ss_dssp CEEEECC
T ss_pred eEEEEEC
Confidence 8777543
No 157
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=88.34 E-value=1.8 Score=45.05 Aligned_cols=82 Identities=18% Similarity=0.294 Sum_probs=60.1
Q ss_pred CCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeC
Q 010111 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (518)
Q Consensus 100 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~T 179 (518)
.+.++||+|+|+.-+..+.+.+... ++++..++|+.+...+...+.. .-....+|+|||
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~-----------------f~~g~~~VLVaT 502 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRD-----------------LRLGKYDVLVGI 502 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHH-----------------HHHTSCSEEEES
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHH-----------------HhcCCeEEEEec
Confidence 3558999999999999988888875 6788888888776555432211 112457999999
Q ss_pred ChHHHHhHhcCCCCCCCcccEEEEechhHh
Q 010111 180 PGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (518)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vViDEah~~ 209 (518)
- .+. .++++.++++||+-+++..
T Consensus 503 ~-----~l~--~GlDip~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 503 N-----LLR--EGLDIPEVSLVAILDADKE 525 (661)
T ss_dssp C-----CCS--TTCCCTTEEEEEETTTTCC
T ss_pred c-----hhh--CCcccCCCCEEEEeCcccc
Confidence 3 333 3688889999999998754
No 158
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=88.33 E-value=4.5 Score=41.31 Aligned_cols=82 Identities=15% Similarity=0.116 Sum_probs=59.5
Q ss_pred CCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeC
Q 010111 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (518)
Q Consensus 100 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~T 179 (518)
.+.++||.++|+.-+..+++.+...... ++.+..++|+.+...+...+. .......+|+|||
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-~~~v~~~hg~~~~~~R~~~~~-----------------~F~~g~~~vLVaT 348 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLVK-----------------RFKKDESGILVCT 348 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHHH-----------------HHHHCSSEEEEEC
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcC-CCcEEEecCCCCHHHHHHHHH-----------------HhhcCCCeEEEEc
Confidence 4558999999999999999998876442 678899999987666543221 1223457899999
Q ss_pred ChHHHHhHhcCCCCCCCcccEEEEech
Q 010111 180 PGRLMDHINATRGFTLEHLCYLVVDET 206 (518)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vViDEa 206 (518)
+.+.. ++++.++++||.-..
T Consensus 349 -----~~~~~--GiDip~v~~VI~~~~ 368 (579)
T 3sqw_A 349 -----DVGAR--GMDFPNVHEVLQIGV 368 (579)
T ss_dssp -----GGGTS--SCCCTTCCEEEEESC
T ss_pred -----chhhc--CCCcccCCEEEEcCC
Confidence 34443 578888999886653
No 159
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=88.01 E-value=2.4 Score=36.85 Aligned_cols=76 Identities=8% Similarity=0.235 Sum_probs=55.7
Q ss_pred CcEEEEcCChhhHHHHHHHHhhcCCC--ceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc-----c-ccCCCCCCC
Q 010111 333 EKCIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----M-TRGMDVEGV 404 (518)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~L~~~~~~--~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~-~~GiDip~v 404 (518)
.++||.++++..+..+++.++..... +..+..++|+.+..... +.+..+..+|+|+|.- + ...+++..+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999999999888776422 57889999998875544 3445677899999962 1 234567778
Q ss_pred CEEEEcC
Q 010111 405 NNVVNYD 411 (518)
Q Consensus 405 ~~VI~~~ 411 (518)
++||.-+
T Consensus 160 ~~lViDE 166 (220)
T 1t6n_A 160 KHFILDE 166 (220)
T ss_dssp CEEEEES
T ss_pred CEEEEcC
Confidence 8777543
No 160
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=87.93 E-value=2.1 Score=39.55 Aligned_cols=75 Identities=21% Similarity=0.190 Sum_probs=54.4
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
+.++||.++++.-+..+.+.+... ++.+..++|+.+...+...+.. ......+|+|+|
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~-----------------f~~g~~~vLVaT- 85 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGA-----------------FRQGEVRVLVAT- 85 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHH-----------------HHHTSCCEEEEC-
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHH-----------------hhcCCceEEEEe-
Confidence 448999999999988888877664 7889999999876665433221 123457999999
Q ss_pred hHHHHhHhcCCCCCCCcccEEEE
Q 010111 181 GRLMDHINATRGFTLEHLCYLVV 203 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vVi 203 (518)
+.+.. ++++..+++||.
T Consensus 86 ----~va~~--Gidi~~v~~VI~ 102 (300)
T 3i32_A 86 ----DVAAR--GLDIPQVDLVVH 102 (300)
T ss_dssp ----STTTC--STTCCCCSEEEE
T ss_pred ----chhhc--CccccceeEEEE
Confidence 33333 577888998885
No 161
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=87.86 E-value=2.3 Score=38.01 Aligned_cols=77 Identities=14% Similarity=0.270 Sum_probs=54.7
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc-----c--ccCCCCC
Q 010111 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----M--TRGMDVE 402 (518)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~--~~GiDip 402 (518)
...++||.++++..+..+++.++... ..++.+..++|+.+.......+ .+..+|+|+|.- + ..++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 34579999999999999988887652 2247888999998865544332 246899999952 2 1456777
Q ss_pred CCCEEEEcC
Q 010111 403 GVNNVVNYD 411 (518)
Q Consensus 403 ~v~~VI~~~ 411 (518)
.+++||.-.
T Consensus 186 ~~~~lViDE 194 (249)
T 3ber_A 186 ALKYLVMDE 194 (249)
T ss_dssp TCCEEEECS
T ss_pred ccCEEEEcC
Confidence 788777644
No 162
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=87.54 E-value=0.58 Score=43.60 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=17.1
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 010111 69 ERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l 88 (518)
+.++++.||+|+|||..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57899999999999986544
No 163
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=86.65 E-value=1.1 Score=44.94 Aligned_cols=40 Identities=23% Similarity=0.163 Sum_probs=25.6
Q ss_pred HHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHH
Q 010111 41 VALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (518)
Q Consensus 41 ~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~ 85 (518)
..+.++|. +.+.+.+-+...+. .|..+++.||||||||..
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~---~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIE---HKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHH---TTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHh---CCCEEEEECCCCCCHHHH
Confidence 44555562 33334443333333 588899999999999975
No 164
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=86.56 E-value=2.9 Score=43.50 Aligned_cols=82 Identities=15% Similarity=0.191 Sum_probs=59.4
Q ss_pred CCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeC
Q 010111 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (518)
Q Consensus 100 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~T 179 (518)
.+.++||.|+|+.-+..+.+.+... ++++..++|+.+...+...+.. ......+|+|||
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~-----------------f~~g~~~VLvaT 496 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRD-----------------LRLGHYDCLVGI 496 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHH-----------------HHTTSCSEEEES
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHH-----------------hhcCCceEEEcc
Confidence 3458999999999999988888875 6788888888776655332211 122457999999
Q ss_pred ChHHHHhHhcCCCCCCCcccEEEEechhHh
Q 010111 180 PGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (518)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vViDEah~~ 209 (518)
+.+. .++++..+++||+=+++..
T Consensus 497 -----~~l~--~GlDip~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 497 -----NLLR--EGLDIPEVSLVAILDADKE 519 (664)
T ss_dssp -----CCCC--TTCCCTTEEEEEETTTTSC
T ss_pred -----Chhh--cCccCCCCCEEEEeCCccc
Confidence 3333 3678889999998887654
No 165
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=85.77 E-value=0.68 Score=42.96 Aligned_cols=45 Identities=11% Similarity=-0.129 Sum_probs=29.0
Q ss_pred CCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHH
Q 010111 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (518)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~L 113 (518)
+..| -++|.+|+|+|||..++-.+.+..... .+.+++|+..--.+
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g--~g~~vlyId~E~s~ 70 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQY--PDAVCLFYDSEFGI 70 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHC--TTCEEEEEESSCCC
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcC--CCceEEEEeccchh
Confidence 3346 688999999999987555444443321 23478888754443
No 166
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=85.66 E-value=0.19 Score=47.54 Aligned_cols=33 Identities=18% Similarity=0.050 Sum_probs=22.7
Q ss_pred hHHHHHHhhCCCCCCCCEEEECCCCchHHHHhH
Q 010111 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 55 Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~ 87 (518)
|.+++..+...+..+.++++.||+|+|||..+-
T Consensus 32 ~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 32 QKYMINRLLIGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp CHHHHHHHHHHHHHTCCEEEESCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHH
Confidence 444444443333357899999999999997543
No 167
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=85.64 E-value=0.87 Score=40.52 Aligned_cols=52 Identities=17% Similarity=0.128 Sum_probs=32.0
Q ss_pred CCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHH
Q 010111 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (518)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 123 (518)
..|.-+++.||+|+|||..++-.+...+.. +.+++++.-. .-..++.+.+..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~----~~~v~~~~~e-~~~~~~~~~~~~ 72 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKM----GEPGIYVALE-EHPVQVRQNMAQ 72 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHT----TCCEEEEESS-SCHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc----CCeEEEEEcc-CCHHHHHHHHHH
Confidence 357888999999999998654434433322 3367777633 224455555543
No 168
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=85.56 E-value=1 Score=41.78 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=17.0
Q ss_pred CCCCEEEECCCCchHHHHhHH
Q 010111 68 FERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l 88 (518)
.+.++++.||+|+|||..+-.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 346799999999999987543
No 169
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=85.50 E-value=1.6 Score=38.64 Aligned_cols=78 Identities=10% Similarity=0.210 Sum_probs=48.0
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcCC-CceeEEEccccCChHHHHHHHHHHhcCCceEEEEcC-----cccc-CCCCCC
Q 010111 331 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTR-GMDVEG 403 (518)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-GiDip~ 403 (518)
.+.++||.++++..+..+++.++..+. .+..+..++|+.+.. ...+.+..+..+|+|+|. .+.. .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 356899999999999999999887642 346777778876543 234455667789999994 3333 356667
Q ss_pred CCEEEEcC
Q 010111 404 VNNVVNYD 411 (518)
Q Consensus 404 v~~VI~~~ 411 (518)
+++||.-.
T Consensus 174 ~~~lViDE 181 (237)
T 3bor_A 174 IKMFVLDE 181 (237)
T ss_dssp CCEEEEES
T ss_pred CcEEEECC
Confidence 77777543
No 170
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=85.50 E-value=0.66 Score=41.42 Aligned_cols=53 Identities=19% Similarity=0.121 Sum_probs=32.3
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
.|.-+++.|++|+|||..++--+.+.+.+. +..++|++-. +-..++.+.+..+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~---~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY---GEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH---CCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc---CCCceeeccc-CCHHHHHHHHHHc
Confidence 467889999999999976554444444432 2257777533 2244555555443
No 171
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=85.34 E-value=0.5 Score=42.86 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=16.5
Q ss_pred CCCCCEEEECCCCchHHHH
Q 010111 67 LFERDLCINSPTGSGKTLS 85 (518)
Q Consensus 67 ~~~~~~li~apTGsGKT~~ 85 (518)
..|.-+++.+|||||||..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp CSSEEEEEECSTTCSHHHH
T ss_pred CCCCEEEEECCCCccHHHH
Confidence 3578899999999999975
No 172
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=85.14 E-value=3.4 Score=35.38 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=53.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc-----cc-cCCCCCCCC
Q 010111 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MT-RGMDVEGVN 405 (518)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~-~GiDip~v~ 405 (518)
+.++||.++++..+..+++.+..... ...+..++|+.+.......+. ...+|+|+|.- +. ..+++..++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAP-HLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCT-TSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhh-cceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 56899999999999999999987643 267888888887654443332 25789999952 22 245667778
Q ss_pred EEEEcC
Q 010111 406 NVVNYD 411 (518)
Q Consensus 406 ~VI~~~ 411 (518)
+||.-+
T Consensus 147 ~iViDE 152 (207)
T 2gxq_A 147 VAVLDE 152 (207)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 777543
No 173
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=84.92 E-value=6.4 Score=37.81 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=55.4
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
..++||.++++.-+..+++.+... +..+..++|+.+..++...+. .......+|+|+|
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~-----------------~f~~g~~~vlv~T- 323 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIE-----------------RFREGKEKVLVTT- 323 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHH-----------------HHHTTSCSEEEEC-
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHH-----------------HHHCCCCcEEEEc-
Confidence 348999999999999999888875 678889999988766543321 1223457899999
Q ss_pred hHHHHhHhcCCCCCCCcccEEEE
Q 010111 181 GRLMDHINATRGFTLEHLCYLVV 203 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vVi 203 (518)
+.+.. ++++.++++||.
T Consensus 324 ----~~~~~--Gidip~~~~Vi~ 340 (412)
T 3fht_A 324 ----NVCAR--GIDVEQVSVVIN 340 (412)
T ss_dssp ----GGGTS--SCCCTTEEEEEE
T ss_pred ----Ccccc--CCCccCCCEEEE
Confidence 33443 578888999884
No 174
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=84.49 E-value=3.3 Score=35.47 Aligned_cols=75 Identities=11% Similarity=0.162 Sum_probs=52.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcCCC--ceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc-----ccc-CCCCCC
Q 010111 332 EEKCIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTR-GMDVEG 403 (518)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~--~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~-GiDip~ 403 (518)
..++||.++++..+..+++.+...... +..+..++|+.+..+.... + .+..+|+|+|.- +.. .+++..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 458999999999999998888765421 5788889998876543322 2 356799999962 222 345667
Q ss_pred CCEEEEc
Q 010111 404 VNNVVNY 410 (518)
Q Consensus 404 v~~VI~~ 410 (518)
+++||.-
T Consensus 147 ~~~lViD 153 (206)
T 1vec_A 147 VQMIVLD 153 (206)
T ss_dssp CCEEEEE
T ss_pred CCEEEEE
Confidence 7777753
No 175
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=84.39 E-value=0.82 Score=44.99 Aligned_cols=43 Identities=30% Similarity=0.359 Sum_probs=31.5
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHH
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~ 115 (518)
..+++|.|+||+|||... ..++.++... +..++|+=|..++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~~~---g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGLLR---GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHHHT---TCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHHC---CCcEEEEeCCCchhH
Confidence 579999999999999874 4455444432 346888888888754
No 176
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=84.36 E-value=2.3 Score=37.80 Aligned_cols=76 Identities=11% Similarity=0.215 Sum_probs=54.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcC-----ccc-cCCCCCCC
Q 010111 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMT-RGMDVEGV 404 (518)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~GiDip~v 404 (518)
+.++||.++++..+..+++.+.... ..++.+..++|+.+.......+. . ..+|+|+|. .+. ..+++..+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 5679999999999999988876642 22478889999998766554443 2 478999995 222 23577788
Q ss_pred CEEEEcC
Q 010111 405 NNVVNYD 411 (518)
Q Consensus 405 ~~VI~~~ 411 (518)
++||.-.
T Consensus 178 ~~lViDE 184 (242)
T 3fe2_A 178 TYLVLDE 184 (242)
T ss_dssp CEEEETT
T ss_pred cEEEEeC
Confidence 8877544
No 177
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=84.08 E-value=1.4 Score=41.15 Aligned_cols=61 Identities=8% Similarity=-0.240 Sum_probs=37.5
Q ss_pred HHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHH
Q 010111 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (518)
Q Consensus 57 ~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~ 122 (518)
..++.++..+..|.-++|.|++|+|||..++-.+.+...+ +.+++|++-- .-..|+...+.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~----g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN----DDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT----TCEEEEEESS-SCHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc----CCeEEEEECC-CCHHHHHHHHH
Confidence 3455566556678889999999999997655444443332 2468887633 22334444443
No 178
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=83.98 E-value=6 Score=38.68 Aligned_cols=73 Identities=12% Similarity=0.153 Sum_probs=54.6
Q ss_pred cEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChH
Q 010111 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 182 (518)
Q Consensus 103 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~ 182 (518)
++||.++++.-+..+++.+... ++.+..++|+.+..++...+.. ......+|+|||
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~-----------------F~~g~~~vLvaT--- 357 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRD-----------------FKNGSMKVLIAT--- 357 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHH-----------------HHTSSCSEEEEC---
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHH-----------------HHcCCCcEEEEc---
Confidence 4999999999999988888775 7889999999886665433221 223457999999
Q ss_pred HHHhHhcCCCCCCCcccEEEE
Q 010111 183 LMDHINATRGFTLEHLCYLVV 203 (518)
Q Consensus 183 l~~~l~~~~~~~~~~~~~vVi 203 (518)
+.+.. ++++.++++||.
T Consensus 358 --~v~~r--GlDi~~v~~VI~ 374 (434)
T 2db3_A 358 --SVASR--GLDIKNIKHVIN 374 (434)
T ss_dssp --GGGTS--SCCCTTCCEEEE
T ss_pred --hhhhC--CCCcccCCEEEE
Confidence 34443 688888999885
No 179
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=83.81 E-value=2 Score=43.99 Aligned_cols=59 Identities=7% Similarity=0.135 Sum_probs=53.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHH--hcCCceEEEEcC
Q 010111 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF--REGKIQVLVSSD 393 (518)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f--~~g~~~vLvaT~ 393 (518)
.+.+||.+|++.-+....+.|...+ +.+..++|+++..++..++..+ ..+..+|+++|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~g---i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLG---ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHT---CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcC---CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 5789999999999999999998875 8899999999999999888888 578899999997
No 180
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=83.56 E-value=2.3 Score=42.85 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=53.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcC
Q 010111 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393 (518)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~ 393 (518)
.+.+||.++++.-+....+.|...+ +.+..+||+.+..++..++..+..|..+|+++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~g---i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANG---VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 4789999999999999999998865 7899999999999999999999999999999995
No 181
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=83.56 E-value=0.92 Score=44.92 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=17.1
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
.++++++.+|+|+|||..+-
T Consensus 62 ~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHH
Confidence 45789999999999998654
No 182
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=83.53 E-value=1.1 Score=39.04 Aligned_cols=44 Identities=16% Similarity=-0.061 Sum_probs=28.4
Q ss_pred HHHHhhC-CCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc
Q 010111 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (518)
Q Consensus 58 a~~~~~~-~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~ 108 (518)
+++.++. .+..|.-+++.+|+|+|||..+...+. .. +.+++++.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~----~~~v~~i~ 52 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LS----GKKVAYVD 52 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HH----CSEEEEEE
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---Hc----CCcEEEEE
Confidence 3444553 455678889999999999976544333 11 23567765
No 183
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=83.49 E-value=0.54 Score=44.98 Aligned_cols=21 Identities=38% Similarity=0.466 Sum_probs=17.4
Q ss_pred CCCCEEEECCCCchHHHHhHH
Q 010111 68 FERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l 88 (518)
...++++.||+|+|||..+-.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 457899999999999986443
No 184
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=83.34 E-value=1.7 Score=36.46 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=16.2
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
..++++.||+|+|||..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 5789999999999998644
No 185
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=83.14 E-value=0.66 Score=42.03 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=16.4
Q ss_pred CCCCEEEECCCCchHHHHh
Q 010111 68 FERDLCINSPTGSGKTLSY 86 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (518)
.+..+++.||+|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 3678999999999999864
No 186
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=83.04 E-value=0.26 Score=49.35 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=22.6
Q ss_pred hhHHHHHHhhCCCCCCCCEEEECCCCchHHHH
Q 010111 54 VQVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (518)
Q Consensus 54 ~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~ 85 (518)
.|.+++..++..+..+.++++.||+|+|||..
T Consensus 26 Gq~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 26 ERSHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp SCHHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 34444444443344578999999999999985
No 187
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=82.79 E-value=2.5 Score=37.13 Aligned_cols=75 Identities=11% Similarity=0.154 Sum_probs=54.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcCC--CceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCcc------ccCCCCCC
Q 010111 332 EEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM------TRGMDVEG 403 (518)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~--~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~~GiDip~ 403 (518)
..++||.+++++.+..+++.++..+. .++.+..++|+.+..++...+ ...+|+|+|.-- ...+++..
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 46899999999999999999887642 257889999998876554433 357999999731 23456667
Q ss_pred CCEEEEcC
Q 010111 404 VNNVVNYD 411 (518)
Q Consensus 404 v~~VI~~~ 411 (518)
+++||.-+
T Consensus 167 ~~~lViDE 174 (230)
T 2oxc_A 167 IRLFILDE 174 (230)
T ss_dssp CCEEEESS
T ss_pred CCEEEeCC
Confidence 77776543
No 188
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=82.77 E-value=4.3 Score=38.77 Aligned_cols=79 Identities=13% Similarity=0.173 Sum_probs=57.3
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
..++||.++++.-+..+++.++.. +..+..++|+.+..++...+.. ......+|+|+|
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~-----------------f~~g~~~vlv~T- 300 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDD-----------------FREGRSKVLITT- 300 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHH-----------------HHTTSCCEEEEC-
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHH-----------------HHCCCCCEEEEC-
Confidence 457999999999999998888775 6788999999886665433211 123457899999
Q ss_pred hHHHHhHhcCCCCCCCcccEEEEechh
Q 010111 181 GRLMDHINATRGFTLEHLCYLVVDETD 207 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vViDEah 207 (518)
+.+. .++++.++++||.-+..
T Consensus 301 ----~~~~--~Gidip~~~~Vi~~~~p 321 (395)
T 3pey_A 301 ----NVLA--RGIDIPTVSMVVNYDLP 321 (395)
T ss_dssp ----GGGS--SSCCCTTEEEEEESSCC
T ss_pred ----Chhh--cCCCcccCCEEEEcCCC
Confidence 3333 35788889999875543
No 189
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=82.71 E-value=1.2 Score=37.45 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
...+++.||+|+|||..+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4779999999999998643
No 190
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=82.69 E-value=3.8 Score=38.65 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=55.3
Q ss_pred CCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeC
Q 010111 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (518)
Q Consensus 100 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~T 179 (518)
.+.++||.++++.-+..+++.++.. +..+..++|+.+...+...+. .......+|+|+|
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~-----------------~f~~~~~~vlv~T 295 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIR-----------------LFKQKKIRILIAT 295 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHH-----------------HHHTTSSSEEEEC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHH-----------------HHHcCCCeEEEEC
Confidence 3457999999999999998888875 678899999887665543221 1123457899999
Q ss_pred ChHHHHhHhcCCCCCCCcccEEEEec
Q 010111 180 PGRLMDHINATRGFTLEHLCYLVVDE 205 (518)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vViDE 205 (518)
. .+.. ++++.++++||.-.
T Consensus 296 ~-----~~~~--Gid~~~~~~Vi~~~ 314 (367)
T 1hv8_A 296 D-----VMSR--GIDVNDLNCVINYH 314 (367)
T ss_dssp T-----THHH--HCCCSCCSEEEESS
T ss_pred C-----hhhc--CCCcccCCEEEEec
Confidence 2 3333 46677788888644
No 191
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=82.46 E-value=3.9 Score=39.05 Aligned_cols=79 Identities=13% Similarity=0.122 Sum_probs=56.9
Q ss_pred CCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeC
Q 010111 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (518)
Q Consensus 100 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~T 179 (518)
.+.++||+++++.-+..+++.+... ++.+..++|+.+...+...+. .......+|+|+|
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~-----------------~f~~~~~~vlv~T 307 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQ-----------------QFKDFQRRILVAT 307 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHH-----------------HHHTTCCSEEEES
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHH-----------------HHhcCCCcEEEEC
Confidence 3458999999999999998888775 678889999887665543221 1223457899999
Q ss_pred ChHHHHhHhcCCCCCCCcccEEEEech
Q 010111 180 PGRLMDHINATRGFTLEHLCYLVVDET 206 (518)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vViDEa 206 (518)
. .+. .++++..+++||.-+.
T Consensus 308 ~-----~~~--~Gidi~~~~~Vi~~~~ 327 (391)
T 1xti_A 308 N-----LFG--RGMDIERVNIAFNYDM 327 (391)
T ss_dssp C-----CCS--SCBCCTTEEEEEESSC
T ss_pred C-----hhh--cCCCcccCCEEEEeCC
Confidence 2 233 3578888999987554
No 192
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=82.03 E-value=6.6 Score=37.60 Aligned_cols=77 Identities=12% Similarity=0.139 Sum_probs=55.4
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
..++||+++++.-+..+++.+... ++.+..++|+.+...+...+.. ......+|+|+|.
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~-----------------f~~g~~~vLv~T~ 316 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHE-----------------FRQGKVRTLVCSD 316 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHH-----------------HHTTSSSEEEESS
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHH-----------------HhcCCCcEEEEcC
Confidence 348999999999999998888876 6788899998876665432211 1234578999992
Q ss_pred hHHHHhHhcCCCCCCCcccEEEEec
Q 010111 181 GRLMDHINATRGFTLEHLCYLVVDE 205 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vViDE 205 (518)
.+. .++++..+++||.-+
T Consensus 317 -----~~~--~Gidip~~~~Vi~~~ 334 (400)
T 1s2m_A 317 -----LLT--RGIDIQAVNVVINFD 334 (400)
T ss_dssp -----CSS--SSCCCTTEEEEEESS
T ss_pred -----ccc--cCCCccCCCEEEEeC
Confidence 333 357888888888543
No 193
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=82.02 E-value=2.4 Score=38.25 Aligned_cols=48 Identities=21% Similarity=0.192 Sum_probs=31.2
Q ss_pred HHHHHHHHhCCCCccchhhHHH-HHHhhCCCCCCC-CEEEECCCCchHHHHhH
Q 010111 37 PRLKVALQNMGISSLFPVQVAV-WQETIGPGLFER-DLCINSPTGSGKTLSYA 87 (518)
Q Consensus 37 ~~~~~~l~~~g~~~~~~~Q~~a-~~~~~~~~~~~~-~~li~apTGsGKT~~~~ 87 (518)
..+.+.|+-.||. +.+... +...+......+ .+++.||+|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4888899888874 445333 233343321223 48899999999998755
No 194
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=81.91 E-value=1.5 Score=38.72 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=16.9
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
.+..+++.||+|+|||..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 36789999999999998644
No 195
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=81.69 E-value=2.1 Score=47.93 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=29.5
Q ss_pred EEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHH
Q 010111 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (518)
Q Consensus 73 li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~ 112 (518)
+|.|..|||||.+.+--+...+..+ ..+.++|++||...
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~-~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRA-PFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHC-TTSSCEEEECCGGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhC-CCCCcEEEEecCcc
Confidence 7889999999998766666555553 34468999999864
No 196
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=81.36 E-value=1.4 Score=35.80 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=16.8
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
.++.+++.+|+|+|||..+-
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57889999999999997533
No 197
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=81.33 E-value=7.3 Score=37.49 Aligned_cols=76 Identities=14% Similarity=0.198 Sum_probs=55.0
Q ss_pred ccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCCh
Q 010111 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (518)
Q Consensus 102 ~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~ 181 (518)
.++||.++++.-+..+++.+... ++.+..++|+.+..++...+.. ......+|+|+|
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~-----------------f~~g~~~vlv~T-- 333 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKE-----------------FRSGASRVLIST-- 333 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHH-----------------HHHTSSCEEEEC--
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHH-----------------HHCCCCCEEEEC--
Confidence 37999999999999988888775 6788899999876655432211 123457899999
Q ss_pred HHHHhHhcCCCCCCCcccEEEEec
Q 010111 182 RLMDHINATRGFTLEHLCYLVVDE 205 (518)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~vViDE 205 (518)
+.+. .++++.++++||.-+
T Consensus 334 ---~~~~--~Gidi~~v~~Vi~~~ 352 (410)
T 2j0s_A 334 ---DVWA--RGLDVPQVSLIINYD 352 (410)
T ss_dssp ---GGGS--SSCCCTTEEEEEESS
T ss_pred ---Chhh--CcCCcccCCEEEEEC
Confidence 3334 357888899888533
No 198
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.41 E-value=1.1 Score=43.06 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=17.0
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
..+.+|+.||+|||||+.+-
T Consensus 181 ~prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHH
Confidence 35899999999999998643
No 199
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=80.38 E-value=1.5 Score=53.50 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=36.3
Q ss_pred CCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHH
Q 010111 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 35 l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l 88 (518)
|...+.+.+.++|+ .+.+.+..=+-.+.+.+...+.++++||||||||.++-.
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 34667777778998 566655544333344334567789999999999997553
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=80.37 E-value=1 Score=41.76 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=17.1
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
.++.+++.||+|+|||..+-
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHH
Confidence 46889999999999998644
No 201
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=80.17 E-value=1.1 Score=41.50 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=16.9
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
.+.++++.||+|+|||..+-
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHH
Confidence 46789999999999998643
No 202
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.98 E-value=1.1 Score=43.79 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=16.9
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
..+.+|+.||+|||||+.+-
T Consensus 214 ~prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHH
Confidence 35889999999999998643
No 203
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=79.88 E-value=6.5 Score=34.93 Aligned_cols=75 Identities=12% Similarity=0.208 Sum_probs=52.8
Q ss_pred CcEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc-----c-ccCCCCCCCC
Q 010111 333 EKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----M-TRGMDVEGVN 405 (518)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~-~~GiDip~v~ 405 (518)
.++||.+++++.+..+++.+...+ ..+..+..++|+.+.......+ ....+|+|+|.- + ...+++..++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 589999999999999988887653 2346788888888765443322 346799999963 1 2235677788
Q ss_pred EEEEcC
Q 010111 406 NVVNYD 411 (518)
Q Consensus 406 ~VI~~~ 411 (518)
+||.-.
T Consensus 177 ~lViDE 182 (253)
T 1wrb_A 177 YIVLDE 182 (253)
T ss_dssp EEEEET
T ss_pred EEEEeC
Confidence 777543
No 204
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=79.75 E-value=0.9 Score=38.94 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=15.4
Q ss_pred CCCCEEEECCCCchHHHH
Q 010111 68 FERDLCINSPTGSGKTLS 85 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (518)
.++-+++.+|||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 367789999999999975
No 205
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=79.73 E-value=3.1 Score=46.57 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=42.1
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhc--------ccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNR--------AVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~--------~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
...+|.|.-|||||.+...-++..+... +....++|+|+=|+.-|..+.+.+...
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 3459999999999999777777776542 123457999999999888888777654
No 206
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=79.66 E-value=0.8 Score=38.99 Aligned_cols=16 Identities=38% Similarity=0.775 Sum_probs=13.9
Q ss_pred CCEEEECCCCchHHHH
Q 010111 70 RDLCINSPTGSGKTLS 85 (518)
Q Consensus 70 ~~~li~apTGsGKT~~ 85 (518)
+-++++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999984
No 207
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.57 E-value=2.2 Score=41.84 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=17.0
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
..+.+|+.||+|||||+.+-
T Consensus 242 pprGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHH
Confidence 46899999999999998643
No 208
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=79.53 E-value=1.2 Score=40.11 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=16.6
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
..+.+++.||+|+|||..+-
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35789999999999998644
No 209
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=79.43 E-value=2.1 Score=42.06 Aligned_cols=48 Identities=10% Similarity=-0.220 Sum_probs=32.9
Q ss_pred HHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcC
Q 010111 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (518)
Q Consensus 58 a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~P 109 (518)
.++.++..+..|.-++|.|++|+|||..++-.+.+...+ +.+++|++-
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~----g~~vl~fSl 233 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN----DDVVNLHSL 233 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT----TCEEEEECS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc----CCEEEEEEC
Confidence 455566556667888999999999998655544444333 346888863
No 210
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=79.43 E-value=1.8 Score=40.12 Aligned_cols=17 Identities=35% Similarity=0.600 Sum_probs=14.7
Q ss_pred CEEEECCCCchHHHHhH
Q 010111 71 DLCINSPTGSGKTLSYA 87 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (518)
++++.||+|+|||..+.
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 59999999999998644
No 211
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=79.42 E-value=1.5 Score=41.73 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=17.2
Q ss_pred CCCCEEEECCCCchHHHHhHH
Q 010111 68 FERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l 88 (518)
.++.+++.||+|+|||..+-.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~ 89 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMG 89 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 357899999999999986443
No 212
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=79.34 E-value=1.2 Score=40.84 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=16.8
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
..+.+++.||+|+|||..+-
T Consensus 50 ~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 46789999999999998643
No 213
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=79.19 E-value=1.6 Score=42.07 Aligned_cols=42 Identities=17% Similarity=0.328 Sum_probs=29.0
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHH
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~L 113 (518)
.+.+++|.||||+|||...-.-+. .+.. .+.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~-~~~~---~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLL-REYM---QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH-HHHT---TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHH-HHHH---CCCEEEEEeCCcCH
Confidence 467999999999999986544333 3322 24578888787653
No 214
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=79.10 E-value=0.95 Score=42.43 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=15.5
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
++-++|.||||+|||..+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3468899999999998644
No 215
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.80 E-value=1.3 Score=43.21 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=16.9
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
..+.+|+.||+|||||+.+-
T Consensus 205 ~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 45789999999999998644
No 216
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=78.77 E-value=1.2 Score=38.56 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=17.7
Q ss_pred CCCCCCEEEECCCCchHHHHh
Q 010111 66 GLFERDLCINSPTGSGKTLSY 86 (518)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~ 86 (518)
+..++-++++||+|+|||..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 456888999999999999853
No 217
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=78.67 E-value=7.6 Score=34.02 Aligned_cols=76 Identities=12% Similarity=0.184 Sum_probs=52.4
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc-----ccc--CCCCC
Q 010111 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTR--GMDVE 402 (518)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~--GiDip 402 (518)
.+.++||.++++..+..+++.+...+ ..++.+..++|+.+.......+ +..+|+|+|.- +.. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 35689999999999999999988764 2347888899988765443333 46799999952 112 35666
Q ss_pred CCCEEEEcC
Q 010111 403 GVNNVVNYD 411 (518)
Q Consensus 403 ~v~~VI~~~ 411 (518)
.+++||.-.
T Consensus 171 ~~~~lViDE 179 (236)
T 2pl3_A 171 DLQMLVLDE 179 (236)
T ss_dssp TCCEEEETT
T ss_pred cccEEEEeC
Confidence 777776543
No 218
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=78.58 E-value=2.8 Score=36.58 Aligned_cols=76 Identities=11% Similarity=0.208 Sum_probs=47.5
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCcc------ccCCCCCC
Q 010111 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM------TRGMDVEG 403 (518)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~~GiDip~ 403 (518)
...++||.++++..+..+++.+.... ..+..+..++|+.+..+.... +. ..+|+|+|.-. ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 34689999999999999998887653 235788888998776443332 22 37899999631 23456667
Q ss_pred CCEEEEcC
Q 010111 404 VNNVVNYD 411 (518)
Q Consensus 404 v~~VI~~~ 411 (518)
+++||.-.
T Consensus 156 ~~~iViDE 163 (224)
T 1qde_A 156 IKMFILDE 163 (224)
T ss_dssp CCEEEEET
T ss_pred CcEEEEcC
Confidence 77777533
No 219
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=78.55 E-value=1.3 Score=37.26 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=16.1
Q ss_pred CCCCEEEECCCCchHHHHh
Q 010111 68 FERDLCINSPTGSGKTLSY 86 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (518)
.|+-+++.||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4777899999999999853
No 220
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=78.24 E-value=2.2 Score=40.37 Aligned_cols=47 Identities=19% Similarity=0.082 Sum_probs=29.9
Q ss_pred HHHhhC--CCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcC
Q 010111 59 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (518)
Q Consensus 59 ~~~~~~--~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~P 109 (518)
++.++. .+..|.-+++.+|+|+|||..++..+...... +.+++|+..
T Consensus 49 LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~----g~~vlyi~~ 97 (349)
T 2zr9_A 49 LDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA----GGIAAFIDA 97 (349)
T ss_dssp HHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT----TCCEEEEES
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEEC
Confidence 344444 34457788999999999998655544433322 336777754
No 221
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=78.19 E-value=2.9 Score=41.09 Aligned_cols=49 Identities=12% Similarity=-0.128 Sum_probs=32.0
Q ss_pred HHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcC
Q 010111 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (518)
Q Consensus 58 a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~P 109 (518)
.++.++..+..|.-++|.|++|+|||..++-.+.+.... .+.+++|+..
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~---~g~~vl~~sl 237 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK---EGVGVGIYSL 237 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TCCCEEEEES
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CCCeEEEEEC
Confidence 345556556667888999999999997655444443332 1336788754
No 222
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=78.19 E-value=1.6 Score=42.47 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=21.0
Q ss_pred hhHHHHHHhhCCCCCCCCEEEECCCCchHHHH
Q 010111 54 VQVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (518)
Q Consensus 54 ~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~ 85 (518)
-+..++..++. ..+.-+++.+|||||||..
T Consensus 154 ~~~~~L~~l~~--~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 154 HNHDNFRRLIK--RPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHHT--SSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHH--hcCCeEEEECCCCCCHHHH
Confidence 34455555442 3466789999999999975
No 223
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.08 E-value=0.95 Score=42.88 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=15.2
Q ss_pred CCEEEECCCCchHHHHhH
Q 010111 70 RDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (518)
.++++.||+|+|||..+-
T Consensus 59 ~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 459999999999998643
No 224
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=78.02 E-value=2.2 Score=43.07 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=27.9
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcH
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~ 111 (518)
..+++|.+.||||||.+.-..++..+........+++++=|..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 3689999999999998755545544444322344566655553
No 225
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.98 E-value=1.4 Score=43.15 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=17.0
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
..+.+|+.||+|||||+.+-
T Consensus 214 ~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 35899999999999998644
No 226
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=77.92 E-value=1.2 Score=41.03 Aligned_cols=19 Identities=37% Similarity=0.562 Sum_probs=16.4
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
++.+++.||+|+|||..+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 5789999999999998643
No 227
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=77.75 E-value=1.1 Score=40.69 Aligned_cols=20 Identities=30% Similarity=0.263 Sum_probs=16.6
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 010111 69 ERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l 88 (518)
...+++.||+|+|||..+-.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 46899999999999986543
No 228
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=77.60 E-value=1.2 Score=41.22 Aligned_cols=18 Identities=33% Similarity=0.421 Sum_probs=14.4
Q ss_pred CCEEEECCCCchHHHHhH
Q 010111 70 RDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (518)
+-++|.||||+|||..+.
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 346889999999998643
No 229
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=77.54 E-value=3.1 Score=41.01 Aligned_cols=49 Identities=6% Similarity=-0.144 Sum_probs=32.5
Q ss_pred HHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcC
Q 010111 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (518)
Q Consensus 58 a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~P 109 (518)
.++.++..+..|.-+++.|++|+|||..++-.+....... +..++|+..
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~---g~~Vl~~s~ 240 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT---NENVAIFSL 240 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS---SCCEEEEES
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC---CCcEEEEEC
Confidence 4555665566778889999999999976554444333321 336788763
No 230
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=77.53 E-value=1.6 Score=52.59 Aligned_cols=53 Identities=21% Similarity=0.125 Sum_probs=35.3
Q ss_pred CCHHHHHHHHhCCCCccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHH
Q 010111 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 35 l~~~~~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l 88 (518)
+.+.+.+.+.++|+ .+.+.+..-+..+.+.+...+.+++.||||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 44667778888888 566655433322332222357899999999999987553
No 231
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=77.50 E-value=1.4 Score=37.88 Aligned_cols=20 Identities=20% Similarity=0.129 Sum_probs=16.8
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
.++.+++.|++|||||..+-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 46789999999999998643
No 232
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=77.43 E-value=2.7 Score=41.92 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=26.1
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCc
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt 110 (518)
.+.+++|.++||||||.+.-..+...+........+++++=|.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 3578999999999999875444444344322233344444444
No 233
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=77.42 E-value=9.2 Score=34.27 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=54.3
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcC-----cc--ccCCCCC
Q 010111 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AM--TRGMDVE 402 (518)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~--~~GiDip 402 (518)
.+.++||.++++.-+..+++.++... ..+..+..++|+........ .+..+ .+|+|+|. .+ ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ---KLGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH---HHHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH---HhcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 35689999999999999999888754 23467788888887654433 33344 89999994 12 2246777
Q ss_pred CCCEEEEcC
Q 010111 403 GVNNVVNYD 411 (518)
Q Consensus 403 ~v~~VI~~~ 411 (518)
.+++||.-.
T Consensus 201 ~l~~lViDE 209 (262)
T 3ly5_A 201 NLQCLVIDE 209 (262)
T ss_dssp TCCEEEECS
T ss_pred cCCEEEEcC
Confidence 788777543
No 234
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=77.38 E-value=1.4 Score=40.66 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=16.4
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
..++++.||+|+|||..+-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999998644
No 235
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=77.21 E-value=1.4 Score=37.89 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=16.5
Q ss_pred CEEEECCCCchHHHHhHHHHHH
Q 010111 71 DLCINSPTGSGKTLSYALPIVQ 92 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~l~~~~ 92 (518)
-.++.|++|||||..+..-+..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4689999999999975443333
No 236
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=77.14 E-value=2.8 Score=39.82 Aligned_cols=47 Identities=19% Similarity=0.097 Sum_probs=30.5
Q ss_pred HHHhhC--CCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcC
Q 010111 59 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (518)
Q Consensus 59 ~~~~~~--~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~P 109 (518)
++.++. -+..|.-+++.+++|+|||..++-.+.+.... +.+++|+..
T Consensus 51 LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~----g~~vlyid~ 99 (356)
T 1u94_A 51 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDA 99 (356)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEEES
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEeC
Confidence 444453 34456788999999999998765544443322 336888765
No 237
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=77.09 E-value=1.2 Score=41.62 Aligned_cols=19 Identities=26% Similarity=0.428 Sum_probs=16.3
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
.+.+++.||+|+|||..+-
T Consensus 45 ~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4789999999999998644
No 238
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=77.03 E-value=12 Score=36.55 Aligned_cols=100 Identities=18% Similarity=0.139 Sum_probs=61.0
Q ss_pred CCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeec--------CCchHHHHHHhh
Q 010111 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG--------QSSIADEISELI 149 (518)
Q Consensus 78 TGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g--------~~~~~~~~~~~~ 149 (518)
..++|... +.-++...... ..+.++||.++++.-+..+.+.+... ++++..++| +.+..++...+
T Consensus 340 ~~~~k~~~-l~~~l~~~~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~- 412 (494)
T 1wp9_A 340 LDHPKMDK-LKEIIREQLQR-KQNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLIL- 412 (494)
T ss_dssp CSCHHHHH-HHHHHHHHHHH-CTTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHH-
T ss_pred CCChHHHH-HHHHHHHHhcc-CCCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHH-
Confidence 45666654 33344333211 23558999999999999888888875 788888888 44333322211
Q ss_pred cCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechh
Q 010111 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (518)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah 207 (518)
........+|+|+| +.+.. ++++..+++||+-+..
T Consensus 413 ----------------~~F~~~~~~vLv~T-----~~~~~--Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 413 ----------------DEFARGEFNVLVAT-----SVGEE--GLDVPEVDLVVFYEPV 447 (494)
T ss_dssp ----------------HHHHHTSCSEEEEC-----GGGGG--GGGSTTCCEEEESSCC
T ss_pred ----------------HHHhcCCceEEEEC-----Ccccc--CCCchhCCEEEEeCCC
Confidence 11122457899999 23333 5778888888866544
No 239
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=76.99 E-value=1.5 Score=40.51 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
.+.+++.||+|+|||..+-
T Consensus 36 p~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp CSEEEEEECTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3578899999999998644
No 240
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=76.98 E-value=3 Score=39.23 Aligned_cols=48 Identities=13% Similarity=-0.084 Sum_probs=31.7
Q ss_pred HHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcC
Q 010111 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (518)
Q Consensus 58 a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~P 109 (518)
.++.++..+..|.-+++.|++|+|||..++-.+..... .+..++|++.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----~g~~Vl~fSl 82 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----DDRGVAVFSL 82 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----TTCEEEEEES
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cCCeEEEEeC
Confidence 34555555666778899999999999765544443333 2346888763
No 241
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=76.96 E-value=1.3 Score=40.95 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=14.5
Q ss_pred CCEEEECCCCchHHHHhH
Q 010111 70 RDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (518)
+-++|+||||+|||..+.
T Consensus 11 ~~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCccCHHHHHH
Confidence 347889999999998643
No 242
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=76.78 E-value=1.3 Score=41.49 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=16.2
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
.+.+++.||+|+|||..+-
T Consensus 51 ~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCEEEEECSSSSCHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4689999999999998644
No 243
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=76.75 E-value=2.1 Score=35.91 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=16.9
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
.++.+++.|++|||||..+-
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 46789999999999998644
No 244
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=76.50 E-value=0.48 Score=44.12 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=15.3
Q ss_pred CCEEEECCCCchHHHHhH
Q 010111 70 RDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (518)
..+++.||+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 468999999999998644
No 245
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=76.46 E-value=20 Score=33.04 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=15.4
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 010111 69 ERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l 88 (518)
++-+++.+|+|+|||..+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHH
Confidence 34577899999999976443
No 246
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.10 E-value=1.7 Score=42.09 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=16.9
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
..+.+|+.+|+|||||+.+-
T Consensus 215 ~prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHH
T ss_pred CCCCCceECCCCchHHHHHH
Confidence 35889999999999998643
No 247
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=76.07 E-value=2.8 Score=39.95 Aligned_cols=49 Identities=16% Similarity=0.005 Sum_probs=30.6
Q ss_pred HHHHhhC--CCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCc
Q 010111 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (518)
Q Consensus 58 a~~~~~~--~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt 110 (518)
.++.++. .+..|.-++|.+|+|+|||..++-.+.+.... +.+++|+..-
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~----g~~vlyi~~E 111 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA----GGTCAFIDAE 111 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT----TCCEEEEESS
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC----CCeEEEEECC
Confidence 3444554 34456788999999999997655434333222 3367777644
No 248
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=75.98 E-value=1.6 Score=36.85 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=16.4
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 010111 69 ERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l 88 (518)
.+.+++.|++|||||..+-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 56789999999999986443
No 249
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=75.82 E-value=1.6 Score=41.56 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=16.4
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
.+.+++.||+|+|||..+-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4789999999999998644
No 250
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=75.66 E-value=2 Score=44.10 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=14.1
Q ss_pred CEEEECCCCchHHHH
Q 010111 71 DLCINSPTGSGKTLS 85 (518)
Q Consensus 71 ~~li~apTGsGKT~~ 85 (518)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999984
No 251
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=75.66 E-value=1.4 Score=36.86 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=15.3
Q ss_pred CCCEEEECCCCchHHHHh
Q 010111 69 ERDLCINSPTGSGKTLSY 86 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (518)
+.-+++.|++|||||.++
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 466899999999999863
No 252
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=75.58 E-value=1.7 Score=37.71 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=16.0
Q ss_pred CCCCEEEECCCCchHHHHh
Q 010111 68 FERDLCINSPTGSGKTLSY 86 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (518)
.|+-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4677889999999999853
No 253
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=75.51 E-value=1.7 Score=37.31 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=15.1
Q ss_pred CCCCEEEECCCCchHHHHh
Q 010111 68 FERDLCINSPTGSGKTLSY 86 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (518)
.|+-+.+.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778999999999999853
No 254
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=77.35 E-value=0.57 Score=39.18 Aligned_cols=77 Identities=16% Similarity=0.242 Sum_probs=50.6
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
+.++||.++++.-+..+.+.+... ++.+..++|+.+...+...+.. ......+|+|+|
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~-----------------f~~g~~~vLvaT- 87 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKR-----------------LTEGRVNVLVAT- 87 (170)
Confidence 347999999999988888877764 6778888888765444322111 112346899999
Q ss_pred hHHHHhHhcCCCCCCCcccEEEEec
Q 010111 181 GRLMDHINATRGFTLEHLCYLVVDE 205 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vViDE 205 (518)
+.+.. ++++..+++||.-+
T Consensus 88 ----~~~~~--Gid~~~~~~Vi~~~ 106 (170)
T 2yjt_D 88 ----DVAAR--GIDIPDVSHVFNFD 106 (170)
Confidence 23332 46677777777533
No 255
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=75.34 E-value=1.5 Score=39.45 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=15.8
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
.+.+++.||+|+|||..+-
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4679999999999998643
No 256
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=75.32 E-value=3.6 Score=37.78 Aligned_cols=48 Identities=10% Similarity=-0.006 Sum_probs=29.5
Q ss_pred HHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc
Q 010111 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (518)
Q Consensus 58 a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~ 108 (518)
++..+.-.+..|.-+++.||+|+|||..+...+.. +... .+.+++++.
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~-~~~~--~G~~v~~~~ 71 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ-WGTA--MGKKVGLAM 71 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHH-HHHT--SCCCEEEEE
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH-HHHH--cCCeEEEEe
Confidence 44445545567888999999999999764443332 2221 133566664
No 257
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=74.92 E-value=2.7 Score=37.16 Aligned_cols=26 Identities=15% Similarity=-0.181 Sum_probs=19.9
Q ss_pred CCCCCCEEEECCCCchHHHHhHHHHH
Q 010111 66 GLFERDLCINSPTGSGKTLSYALPIV 91 (518)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~~l~~~ 91 (518)
+..|.-+++.+|+|+|||..+...+.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 34577889999999999987555444
No 258
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=74.58 E-value=1.3 Score=36.75 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=14.0
Q ss_pred CEEEECCCCchHHHHhH
Q 010111 71 DLCINSPTGSGKTLSYA 87 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (518)
-+++.|++|||||..+-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46889999999998643
No 259
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=74.30 E-value=1.2 Score=37.78 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCchHHHH
Q 010111 68 FERDLCINSPTGSGKTLS 85 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (518)
.|.-+++.||+|||||..
T Consensus 8 ~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp TTEEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 577889999999999985
No 260
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=74.27 E-value=3.4 Score=41.37 Aligned_cols=59 Identities=5% Similarity=-0.111 Sum_probs=35.4
Q ss_pred HHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHH
Q 010111 59 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (518)
Q Consensus 59 ~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~ 121 (518)
++.++..+..|.-++|.|++|+|||..++-.+.+.... .+.+++|++-- +-..|+...+
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~---~g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA---MGKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT---SCCCEEEEESS-SCHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh---cCCcEEEEecc-CCHHHHHHHH
Confidence 34445556667888999999999998655444443332 13467887632 2233444433
No 261
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=74.17 E-value=2.2 Score=36.61 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=15.9
Q ss_pred CCCCEEEECCCCchHHHH
Q 010111 68 FERDLCINSPTGSGKTLS 85 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (518)
.|+-+++.||+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 477889999999999985
No 262
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=74.15 E-value=1.8 Score=36.66 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=16.6
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
.+..+++.|++|||||.++-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 36789999999999998643
No 263
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=74.10 E-value=2 Score=41.13 Aligned_cols=19 Identities=42% Similarity=0.637 Sum_probs=16.3
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
..++++.||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 5689999999999998644
No 264
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=74.04 E-value=3.4 Score=36.20 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=18.0
Q ss_pred CEEEECCCCchHHHHhHHHHHHHh
Q 010111 71 DLCINSPTGSGKTLSYALPIVQTL 94 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~l~~~~~l 94 (518)
++++.++.|+|||..++--+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 588999999999988555444433
No 265
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=73.88 E-value=2.1 Score=40.24 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
..++++.||+|+|||..+-
T Consensus 55 ~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCCEEEECSTTSSHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4689999999999998643
No 266
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=73.48 E-value=3.1 Score=39.36 Aligned_cols=41 Identities=17% Similarity=-0.087 Sum_probs=26.4
Q ss_pred CCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCc
Q 010111 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (518)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt 110 (518)
+..|.-++|.+|+|+|||..++. +...+.. .+.+++|+..-
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~-la~~~~~---~gg~VlyId~E 98 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALH-AIAEAQK---MGGVAAFIDAE 98 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHH-HHHHHHH---TTCCEEEEESS
T ss_pred ccCCcEEEEECCCCCCHHHHHHH-HHHHHHh---cCCeEEEEecc
Confidence 33467789999999999975443 3333332 23367887644
No 267
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.48 E-value=1.3 Score=41.82 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=14.9
Q ss_pred CEEEECCCCchHHHHhHH
Q 010111 71 DLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~l 88 (518)
++++.||+|+|||..+..
T Consensus 48 ~~ll~Gp~G~GKTtla~~ 65 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVA 65 (340)
T ss_dssp CEEEECSSSSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 389999999999986443
No 268
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=73.43 E-value=1.8 Score=38.86 Aligned_cols=17 Identities=41% Similarity=0.194 Sum_probs=13.9
Q ss_pred CEEEECCCCchHHHHhH
Q 010111 71 DLCINSPTGSGKTLSYA 87 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (518)
-+++.||||||||..+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 36889999999998543
No 269
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=73.34 E-value=1.8 Score=41.20 Aligned_cols=18 Identities=44% Similarity=0.613 Sum_probs=16.4
Q ss_pred CCCCEEEECCCCchHHHH
Q 010111 68 FERDLCINSPTGSGKTLS 85 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (518)
.|..+++.+|||||||..
T Consensus 174 ~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTL 191 (361)
T ss_dssp TTCCEEEEESSSSCHHHH
T ss_pred cCCEEEEECCCCCCHHHH
Confidence 589999999999999974
No 270
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=73.33 E-value=1.7 Score=41.69 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=16.4
Q ss_pred CCCCCEEEECCCCchHHHH
Q 010111 67 LFERDLCINSPTGSGKTLS 85 (518)
Q Consensus 67 ~~~~~~li~apTGsGKT~~ 85 (518)
..|..+++.+|||||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577899999999999975
No 271
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=73.31 E-value=4.8 Score=37.10 Aligned_cols=73 Identities=10% Similarity=0.171 Sum_probs=51.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcCC--CceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCcc------c-cCCCCC
Q 010111 332 EEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM------T-RGMDVE 402 (518)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~--~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~-~GiDip 402 (518)
..++||.+++++.|..+++.+...+. .+..+...+|+.+..... ....+|+|+|.-- . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 34799999999999999888877653 246777777766542211 3567899999632 1 356777
Q ss_pred CCCEEEEcC
Q 010111 403 GVNNVVNYD 411 (518)
Q Consensus 403 ~v~~VI~~~ 411 (518)
.+.++|.-.
T Consensus 235 ~l~~lVlDE 243 (300)
T 3fmo_B 235 KIKVFVLDE 243 (300)
T ss_dssp GCSEEEETT
T ss_pred hceEEEEeC
Confidence 888888644
No 272
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=73.02 E-value=2 Score=40.94 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=16.7
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 010111 69 ERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l 88 (518)
.+.+++.||+|+|||..+-.
T Consensus 117 ~~~vLl~GppGtGKT~la~a 136 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKC 136 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57899999999999986443
No 273
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=72.86 E-value=2.2 Score=36.56 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCchHHHHh
Q 010111 68 FERDLCINSPTGSGKTLSY 86 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (518)
.|.-+.+.||+|||||..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778899999999999853
No 274
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=72.84 E-value=2.4 Score=35.13 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=15.5
Q ss_pred CCCEEEECCCCchHHHHh
Q 010111 69 ERDLCINSPTGSGKTLSY 86 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (518)
+..+++.||.|||||..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567899999999999853
No 275
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=72.66 E-value=3.3 Score=38.88 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCchHHHH
Q 010111 68 FERDLCINSPTGSGKTLS 85 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (518)
.|+.+++.+|||||||..
T Consensus 170 ~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HTCCEEEEESTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 588999999999999974
No 276
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=72.59 E-value=5.8 Score=38.86 Aligned_cols=69 Identities=20% Similarity=0.109 Sum_probs=46.6
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
+.+++|+||+++-+..+++.++.. ++++..++|.... .... .......+|+|||
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~-~~~~--------------------~F~~g~~~vLVaT- 230 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFE-REYP--------------------TIKQKKPDFILAT- 230 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC-----------------------------CCCSEEEES-
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHH-HHHh--------------------hhcCCCceEEEEC-
Confidence 347999999999999999888875 6788888883211 1111 1123457999999
Q ss_pred hHHHHhHhcCCCCCCCcccEEE
Q 010111 181 GRLMDHINATRGFTLEHLCYLV 202 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vV 202 (518)
+.+.. .+++. +++||
T Consensus 231 ----~v~e~--GiDip-v~~VI 245 (440)
T 1yks_A 231 ----DIAEM--GANLC-VERVL 245 (440)
T ss_dssp ----SSTTC--CTTCC-CSEEE
T ss_pred ----Chhhe--eeccC-ceEEE
Confidence 33343 57777 88877
No 277
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=72.56 E-value=1.3 Score=40.00 Aligned_cols=19 Identities=32% Similarity=0.544 Sum_probs=16.0
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
.+.+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4679999999999998644
No 278
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=72.38 E-value=2.3 Score=36.42 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=16.0
Q ss_pred CCCCEEEECCCCchHHHHh
Q 010111 68 FERDLCINSPTGSGKTLSY 86 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (518)
.|.-+.+.||+|||||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4777889999999999853
No 279
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=72.16 E-value=2.4 Score=37.11 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=14.9
Q ss_pred CCEEEECCCCchHHHHhH
Q 010111 70 RDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (518)
..+++.||+|+|||..+-
T Consensus 46 ~~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp SEEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999997643
No 280
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=71.61 E-value=2.1 Score=39.91 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=14.9
Q ss_pred CCEEEECCCCchHHHHhH
Q 010111 70 RDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (518)
+.+++.||||||||..+.
T Consensus 6 ~~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 468899999999998644
No 281
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=71.42 E-value=1.9 Score=40.89 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=14.9
Q ss_pred CCCEEEECCCCchHHHH
Q 010111 69 ERDLCINSPTGSGKTLS 85 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~ 85 (518)
+..+++.||||||||..
T Consensus 123 ~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 55789999999999975
No 282
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=71.21 E-value=13 Score=37.36 Aligned_cols=97 Identities=15% Similarity=0.200 Sum_probs=55.2
Q ss_pred chHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeec--------CCchHHHHHHhhcC
Q 010111 80 SGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG--------QSSIADEISELIKR 151 (518)
Q Consensus 80 sGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g--------~~~~~~~~~~~~~~ 151 (518)
++|... +.-++..+... ....++||.++++.-+..+.+.+.......++.+..++| +.+..++...
T Consensus 370 ~~k~~~-l~~~l~~~~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~---- 443 (555)
T 3tbk_A 370 NPKLRD-LYLVLQEEYHL-KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCV---- 443 (555)
T ss_dssp CHHHHH-HHHHHHHHHHH-CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC----------------------
T ss_pred CHHHHH-HHHHHHHHhcc-CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHH----
Confidence 566654 33333333222 234589999999999999999998865444466666666 3222222111
Q ss_pred CccccCccCCchhHHHhhc--CCCcEEEeCChHHHHhHhcCCCCCCCcccEEEE
Q 010111 152 PKLEAGICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (518)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~--~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vVi 203 (518)
.+... ...+|+|||. .+. .++++.++++||.
T Consensus 444 --------------~~~F~~~g~~~vLvaT~-----~~~--~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 444 --------------LEAFRASGDNNILIATS-----VAD--EGIDIAECNLVIL 476 (555)
T ss_dssp ----------------------CCSEEEECC-----CTT--CCEETTSCSEEEE
T ss_pred --------------HHHHhcCCCeeEEEEcc-----hhh--cCCccccCCEEEE
Confidence 11222 3578999992 333 3578889998885
No 283
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=71.05 E-value=4 Score=37.54 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=16.7
Q ss_pred CCCCEEEECCCCchHHHHhHH
Q 010111 68 FERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l 88 (518)
.++.+++.+|+|+|||..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 356788999999999986444
No 284
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=71.01 E-value=5.8 Score=37.91 Aligned_cols=31 Identities=23% Similarity=0.160 Sum_probs=23.1
Q ss_pred HHHHHHhhCCCCCCCCEEEECCCCchHHHHhH
Q 010111 56 VAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 56 ~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~ 87 (518)
.++++.. -.+..|+.+.|.+|+|+|||....
T Consensus 162 iraID~~-~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 162 ARVLDLA-SPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp HHHHHHH-SCCBTTCEEEEECCSSSSHHHHHH
T ss_pred ceeeeee-eeecCCcEEEEecCCCCChhHHHH
Confidence 3445443 355679999999999999998644
No 285
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=70.57 E-value=1.9 Score=36.04 Aligned_cols=16 Identities=25% Similarity=0.102 Sum_probs=13.6
Q ss_pred CEEEECCCCchHHHHh
Q 010111 71 DLCINSPTGSGKTLSY 86 (518)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (518)
-+++.|++|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999853
No 286
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=70.46 E-value=2.3 Score=41.06 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=16.8
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 010111 69 ERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l 88 (518)
.+++++.||+|+|||..+-.
T Consensus 148 ~~~vLL~GppGtGKT~la~a 167 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKA 167 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57899999999999986443
No 287
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=70.16 E-value=2.4 Score=39.82 Aligned_cols=18 Identities=39% Similarity=0.285 Sum_probs=14.6
Q ss_pred CCEEEECCCCchHHHHhH
Q 010111 70 RDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (518)
.-++|.||||||||..+.
T Consensus 8 ~lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCcCcHHHHHH
Confidence 357899999999998643
No 288
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=70.10 E-value=6.8 Score=37.70 Aligned_cols=77 Identities=13% Similarity=0.194 Sum_probs=47.9
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
..++||.++++.-+..+++.+... ++.+..++|+.+...+...+.. ......+|+|+|.
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~-----------------f~~g~~~vlv~T~ 338 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDVIMRE-----------------FRSGSSRVLITTD 338 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHHHHHH-----------------HSCC---CEEECS
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHHHHHH-----------------HHcCCCcEEEECC
Confidence 347999999999999888877764 6788899998876655433211 1223468999993
Q ss_pred hHHHHhHhcCCCCCCCcccEEEEec
Q 010111 181 GRLMDHINATRGFTLEHLCYLVVDE 205 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vViDE 205 (518)
.+. .++++.++++||.-.
T Consensus 339 -----~~~--~Gidip~v~~Vi~~~ 356 (414)
T 3eiq_A 339 -----LLA--RGIDVQQVSLVINYD 356 (414)
T ss_dssp -----SCC----CCGGGCSCEEESS
T ss_pred -----ccc--cCCCccCCCEEEEeC
Confidence 233 357777888887533
No 289
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=70.01 E-value=1.7 Score=44.77 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=17.8
Q ss_pred CCCCCEEEECCCCchHHHHhH
Q 010111 67 LFERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~~ 87 (518)
..+..+++.+|+|+|||..+-
T Consensus 58 ~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 58 NQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HTTCCEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEEeCCCCCHHHHHH
Confidence 357899999999999998643
No 290
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=69.84 E-value=2 Score=35.57 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=14.1
Q ss_pred CEEEECCCCchHHHHhH
Q 010111 71 DLCINSPTGSGKTLSYA 87 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (518)
.+++.|+.|||||.++-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998643
No 291
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=69.83 E-value=5.1 Score=35.45 Aligned_cols=25 Identities=28% Similarity=0.103 Sum_probs=19.1
Q ss_pred CCCCCCEEEECCCCchHHHHhHHHH
Q 010111 66 GLFERDLCINSPTGSGKTLSYALPI 90 (518)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~~l~~ 90 (518)
+..|.-+.+.+|+|+|||..+...+
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3457889999999999998644433
No 292
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=69.80 E-value=5 Score=44.25 Aligned_cols=79 Identities=9% Similarity=0.253 Sum_probs=59.2
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcC-CCce----eEEEccccCChHHHHHHHHHHhcCCceEEEEcCc-cccCCC-CCC
Q 010111 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRI----KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMD-VEG 403 (518)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~----~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~GiD-ip~ 403 (518)
.+.++||.++++..+..+++.++..+ ..++ .+..+||+.+...+....+.+.+ .+|+|+|+- +..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 45789999999999999999887653 2345 78999999999888888887777 899999963 111111 556
Q ss_pred CCEEEEcC
Q 010111 404 VNNVVNYD 411 (518)
Q Consensus 404 v~~VI~~~ 411 (518)
+++||.-.
T Consensus 176 l~~lViDE 183 (1054)
T 1gku_B 176 FDFIFVDD 183 (1054)
T ss_dssp CSEEEESC
T ss_pred CCEEEEeC
Confidence 77777533
No 293
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=69.72 E-value=3.1 Score=36.29 Aligned_cols=18 Identities=33% Similarity=0.340 Sum_probs=16.0
Q ss_pred CCCCEEEECCCCchHHHH
Q 010111 68 FERDLCINSPTGSGKTLS 85 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (518)
.|+-+.+.||+|+|||..
T Consensus 22 ~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp CCCCEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578899999999999975
No 294
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=69.71 E-value=3 Score=35.25 Aligned_cols=16 Identities=38% Similarity=0.775 Sum_probs=13.7
Q ss_pred CCEEEECCCCchHHHH
Q 010111 70 RDLCINSPTGSGKTLS 85 (518)
Q Consensus 70 ~~~li~apTGsGKT~~ 85 (518)
+-+.+.||+|+|||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578999999999985
No 295
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=69.59 E-value=2.2 Score=39.80 Aligned_cols=19 Identities=32% Similarity=0.330 Sum_probs=16.2
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
...+++.||+|+|||..+-
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4789999999999998643
No 296
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=69.38 E-value=12 Score=35.52 Aligned_cols=76 Identities=11% Similarity=0.227 Sum_probs=54.3
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc-----c-ccCCCCCC
Q 010111 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----M-TRGMDVEG 403 (518)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~-~~GiDip~ 403 (518)
...++||.++++..+..+++.+.... ..+..+..++|+.+..+....+. ..+|+|+|.- + ...+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 35689999999999999988887653 34578899999988766554443 4689999942 1 22355667
Q ss_pred CCEEEEcC
Q 010111 404 VNNVVNYD 411 (518)
Q Consensus 404 v~~VI~~~ 411 (518)
+++||.-.
T Consensus 163 ~~~vIiDE 170 (394)
T 1fuu_A 163 IKMFILDE 170 (394)
T ss_dssp CCEEEEET
T ss_pred CcEEEEEC
Confidence 77777533
No 297
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=69.33 E-value=2.5 Score=41.65 Aligned_cols=19 Identities=26% Similarity=0.428 Sum_probs=16.3
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
.+.+++.||+|+|||..+-
T Consensus 167 ~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4789999999999998644
No 298
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=69.24 E-value=2.6 Score=37.68 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.5
Q ss_pred CCEEEECCCCchHHHHh
Q 010111 70 RDLCINSPTGSGKTLSY 86 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (518)
+.+++.+|+|+|||..+
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999753
No 299
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=69.01 E-value=2.4 Score=42.29 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=16.8
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
....+++.||+|+|||..+-
T Consensus 237 ~~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHH
Confidence 45789999999999998644
No 300
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=68.64 E-value=2.4 Score=36.39 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=16.4
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
.|..+++.||.|||||..+-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 36788999999999998533
No 301
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=68.59 E-value=2.3 Score=35.96 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
+..+++.|++|||||..+-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999998633
No 302
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=68.34 E-value=4.9 Score=37.91 Aligned_cols=45 Identities=9% Similarity=-0.226 Sum_probs=27.4
Q ss_pred CCCCCCEEEECCCCchHHHHhHHHHHHHhhhc--ccCCccEEEEcCc
Q 010111 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPT 110 (518)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~--~~~~~~~lil~Pt 110 (518)
+..|.-+++.||+|+|||..++-.+.+..... ...+.+++|+...
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 34456789999999999986554444322210 0123468888644
No 303
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=68.33 E-value=1.7 Score=36.66 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=15.8
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
|..+++.|++|||||..+-
T Consensus 4 g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp EEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5678999999999998643
No 304
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=68.13 E-value=5.3 Score=45.91 Aligned_cols=45 Identities=20% Similarity=0.104 Sum_probs=30.6
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHH
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q 116 (518)
.|+-+.|.+|.|||||..++-.+.+.... +..++|+.+--+|-..
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~----g~~~~~i~~e~~~~~~ 1474 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAEHALDPI 1474 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEECTTSCCCHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhc----CCeEEEEecCCCCCHH
Confidence 45779999999999998755544443322 3478888776555443
No 305
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=68.01 E-value=2.5 Score=40.69 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=13.9
Q ss_pred CEEEECCCCchHHHHhH
Q 010111 71 DLCINSPTGSGKTLSYA 87 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (518)
-++|.||||+|||..+.
T Consensus 4 ~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECcchhhHHHHHH
Confidence 46789999999997644
No 306
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=67.96 E-value=12 Score=39.70 Aligned_cols=84 Identities=14% Similarity=0.124 Sum_probs=55.1
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhc-------cccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIA-------PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 173 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~-------~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (518)
...+||.+|++.-+..+.+.+...+ ...++.+..++|+.+..++..-+...+.. ..-....
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~------------~~~~g~~ 370 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPES------------HNGRPGR 370 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCC------------SSSSCCE
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccc------------cCCCCce
Confidence 4589999999999999988887532 22478899999999877664332211100 0002346
Q ss_pred cEEEeCChHHHHhHhcCCCCCCCcccEEEE
Q 010111 174 DILVATPGRLMDHINATRGFTLEHLCYLVV 203 (518)
Q Consensus 174 ~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vVi 203 (518)
.|+||| +.+.. .+++.++++||-
T Consensus 371 kVlVAT-----~iae~--GidIp~v~~VId 393 (773)
T 2xau_A 371 KVVIST-----NIAET--SLTIDGIVYVVD 393 (773)
T ss_dssp EEEEEC-----THHHH--TCCCTTEEEEEE
T ss_pred EEEEeC-----cHHHh--CcCcCCeEEEEe
Confidence 899999 33443 467778887763
No 307
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=67.90 E-value=1.6 Score=41.18 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=15.8
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
..++++.||+|+|||..+-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4579999999999998643
No 308
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=67.86 E-value=6.6 Score=33.48 Aligned_cols=35 Identities=17% Similarity=0.109 Sum_probs=27.7
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEE
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil 107 (518)
...+++..++|.|||.+++--++..+-. +.+++|+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~----G~rV~~v 62 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH----GKNVGVV 62 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT----TCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEE
Confidence 4578999999999999888777766654 4478888
No 309
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=67.81 E-value=4.9 Score=42.08 Aligned_cols=79 Identities=15% Similarity=0.244 Sum_probs=50.5
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHh--ccccCceEEEeecC--------CchHHHHHHhhcCCccccCccCCchhHHHhhc
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAI--APAVGLSVGLAVGQ--------SSIADEISELIKRPKLEAGICYDPEDVLQELQ 170 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~--~~~~~~~v~~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (518)
+.++||.++++..+..+.+.+... +...|+++..++|+ .+...+...+.. ...
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~-----------------F~~ 462 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISK-----------------FRT 462 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHH-----------------HCC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHH-----------------Hhc
Confidence 568999999999999999988875 23336888899998 665554333221 222
Q ss_pred CCCcEEEeCChHHHHhHhcCCCCCCCcccEEEE
Q 010111 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (518)
Q Consensus 171 ~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vVi 203 (518)
...+|+||| +.+. .++++.++++||.
T Consensus 463 g~~~VLVaT-----~~~~--~GIDip~v~~VI~ 488 (699)
T 4gl2_A 463 GKINLLIAT-----TVAE--EGLDIKECNIVIR 488 (699)
T ss_dssp ---CCSEEE-----CSCC--TTSCCCSCCCCEE
T ss_pred CCCcEEEEc-----cccc--cCCccccCCEEEE
Confidence 457899999 2333 3578888888874
No 310
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=67.62 E-value=2.1 Score=35.71 Aligned_cols=20 Identities=20% Similarity=0.112 Sum_probs=16.3
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
.|.-+.+.||+|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 46678899999999998543
No 311
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=67.43 E-value=2.8 Score=36.07 Aligned_cols=21 Identities=33% Similarity=0.185 Sum_probs=16.5
Q ss_pred CCCCCCCEEEECCCCchHHHH
Q 010111 65 PGLFERDLCINSPTGSGKTLS 85 (518)
Q Consensus 65 ~~~~~~~~li~apTGsGKT~~ 85 (518)
.+..+.-+.+.|++|||||..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHH
Confidence 333466788999999999985
No 312
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=67.42 E-value=2.1 Score=35.61 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=15.8
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
+..+++.|+.|||||..+-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 5678899999999998643
No 313
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=67.32 E-value=2.9 Score=35.74 Aligned_cols=20 Identities=20% Similarity=0.091 Sum_probs=16.5
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
.+..+++.|+.|||||...-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 46778999999999998643
No 314
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=66.86 E-value=13 Score=34.35 Aligned_cols=75 Identities=13% Similarity=0.140 Sum_probs=50.0
Q ss_pred CCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeC
Q 010111 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (518)
Q Consensus 100 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~T 179 (518)
.+.++||.+++++-+..+++.+. .+..++|+.+...+...+. .......+|+|+|
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~-----------------~f~~~~~~vlv~T 273 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNID-----------------AFREGEYDMLITT 273 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHH-----------------HHHTTSCSEEEEC
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHH-----------------HHHcCCCcEEEEc
Confidence 34579999999998877665444 3567788877665543221 1223457999999
Q ss_pred ChHHHHhHhcCCCCCCCcccEEEEech
Q 010111 180 PGRLMDHINATRGFTLEHLCYLVVDET 206 (518)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vViDEa 206 (518)
+.+.. ++++.++++||.-..
T Consensus 274 -----~~~~~--Gid~~~~~~Vi~~~~ 293 (337)
T 2z0m_A 274 -----DVASR--GLDIPLVEKVINFDA 293 (337)
T ss_dssp -----HHHHT--TCCCCCBSEEEESSC
T ss_pred -----Ccccc--CCCccCCCEEEEecC
Confidence 44444 578888998886443
No 315
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=66.10 E-value=2.4 Score=35.88 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
+.-+++.|++|||||..+-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998643
No 316
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=66.09 E-value=3 Score=40.97 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=15.5
Q ss_pred CCEEEECCCCchHHHHhH
Q 010111 70 RDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (518)
.++++.||+|+|||..+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 579999999999998644
No 317
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=66.08 E-value=2.5 Score=41.91 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=17.1
Q ss_pred CCCCEEEECCCCchHHHHhHH
Q 010111 68 FERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l 88 (518)
...++++.||+|+|||..+-.
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHH
Confidence 357899999999999986443
No 318
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=66.08 E-value=3.9 Score=37.19 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=14.5
Q ss_pred CCEEEECCCCchHHHHh
Q 010111 70 RDLCINSPTGSGKTLSY 86 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (518)
+.+++.||+|+|||..+
T Consensus 45 ~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp SEEEEESSTTSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 45999999999999853
No 319
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=65.97 E-value=3.8 Score=39.15 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=24.2
Q ss_pred cchhhHHHHHHhh----CCCCCCCCE--EEECCCCchHHHH
Q 010111 51 LFPVQVAVWQETI----GPGLFERDL--CINSPTGSGKTLS 85 (518)
Q Consensus 51 ~~~~Q~~a~~~~~----~~~~~~~~~--li~apTGsGKT~~ 85 (518)
+..-|.+.+..+. ..++.|.|+ +..|+||||||.+
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyT 115 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHT 115 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeE
Confidence 3456777776533 334567764 5699999999987
No 320
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=65.59 E-value=4.1 Score=39.85 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=16.2
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
.+++++.+|+|+|||..+-
T Consensus 50 ~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4789999999999998643
No 321
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=65.37 E-value=8.9 Score=32.17 Aligned_cols=60 Identities=5% Similarity=-0.049 Sum_probs=39.6
Q ss_pred hhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHH
Q 010111 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (518)
Q Consensus 53 ~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~ 117 (518)
+-|..|+..++.. ..+-.++.++-|++||...+.-++.... ..|.++.+|+|+..-....
T Consensus 37 ~~~~~a~~~l~~s--~~~~~iv~g~ggs~~~~~~~a~L~~~a~---~~Gr~V~vLAp~~~s~~~l 96 (189)
T 2l8b_A 37 AGYSDAVSVLAQD--RPSLAIVSGQGGAAGQRERVAELVMMAR---EQGREVQIIAADRRSQMNM 96 (189)
T ss_dssp HHHHHHHHHHHHH--SCCEECCBCSSCSHHHHHHHHHHHHHHH---HTTCCEEEECSTTHHHHHH
T ss_pred ccchhHHHHHhcc--CCceEEEecccchHHHHHHHHHHHHHHH---hcCeEEEEEcCchHHHHHH
Confidence 4577777766531 1244577999999999885444433222 2466899999998765543
No 322
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=65.32 E-value=3.2 Score=36.23 Aligned_cols=23 Identities=22% Similarity=-0.080 Sum_probs=17.9
Q ss_pred CCCCCCEEEECCCCchHHHHhHH
Q 010111 66 GLFERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~~l 88 (518)
+..|.-+.+.+|+|+|||..+..
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHH
Confidence 33567789999999999976443
No 323
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=65.32 E-value=3.6 Score=38.60 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=15.4
Q ss_pred CCEEEECCCCchHHHHhH
Q 010111 70 RDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (518)
..+++.||+|+|||..+-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 679999999999998633
No 324
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=65.14 E-value=3.9 Score=35.73 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=16.1
Q ss_pred CCCCCEEEECCCCchHHHH
Q 010111 67 LFERDLCINSPTGSGKTLS 85 (518)
Q Consensus 67 ~~~~~~li~apTGsGKT~~ 85 (518)
..|+-+++.||.|+|||..
T Consensus 14 ~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp -CCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 3578889999999999985
No 325
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=64.88 E-value=22 Score=35.29 Aligned_cols=78 Identities=15% Similarity=0.091 Sum_probs=50.1
Q ss_pred cEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChH
Q 010111 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 182 (518)
Q Consensus 103 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~ 182 (518)
..++++.+..-+..+.+.+... +.++..++|+.+...+..-+. .......+|+|||+..
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~-----------------~f~~g~~~vLv~T~~~ 407 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKT-----------------LAENGKGIIIVASYGV 407 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHH-----------------HHHHCCSCEEEEEHHH
T ss_pred CeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHH-----------------HHhCCCCCEEEEEcCh
Confidence 3444444456565566666654 457889999887665432211 1223557899999665
Q ss_pred HHHhHhcCCCCCCCcccEEEEechh
Q 010111 183 LMDHINATRGFTLEHLCYLVVDETD 207 (518)
Q Consensus 183 l~~~l~~~~~~~~~~~~~vViDEah 207 (518)
+-. ++++.++++||+..+.
T Consensus 408 ~~~------GiDip~v~~vi~~~~~ 426 (510)
T 2oca_A 408 FST------GISVKNLHHVVLAHGV 426 (510)
T ss_dssp HHH------SCCCCSEEEEEESSCC
T ss_pred hhc------ccccccCcEEEEeCCC
Confidence 533 5778889999988876
No 326
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=64.73 E-value=2.9 Score=34.48 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=15.5
Q ss_pred CCEEEECCCCchHHHHhH
Q 010111 70 RDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (518)
+++++.++.|||||.++-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 578999999999998644
No 327
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=64.71 E-value=3.5 Score=37.49 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.5
Q ss_pred CCEEEECCCCchHHHHh
Q 010111 70 RDLCINSPTGSGKTLSY 86 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (518)
+.+++.+|+|+|||..+
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 45999999999999753
No 328
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=64.69 E-value=12 Score=39.51 Aligned_cols=76 Identities=11% Similarity=0.034 Sum_probs=55.1
Q ss_pred HhcCCCcEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc-c----------
Q 010111 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M---------- 395 (518)
Q Consensus 328 ~~~~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-~---------- 395 (518)
....+..++|.++|+.-|...++++.... ..++.+.++.|+++...|.... .++|+++|+- +
T Consensus 120 ~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~ 193 (844)
T 1tf5_A 120 NALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMV 193 (844)
T ss_dssp HHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhh
Confidence 44557789999999999998888876542 2458999999999987665442 3799999962 1
Q ss_pred --ccCCCCCCCCEEEE
Q 010111 396 --TRGMDVEGVNNVVN 409 (518)
Q Consensus 396 --~~GiDip~v~~VI~ 409 (518)
...++...+.++|.
T Consensus 194 ~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 194 LYKEQMVQRPLHFAVI 209 (844)
T ss_dssp SSGGGCCCCCCCEEEE
T ss_pred cchhhhcccCCCEEEE
Confidence 12356667777764
No 329
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=64.35 E-value=4.2 Score=35.02 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=15.9
Q ss_pred CCCCEEEECCCCchHHHH
Q 010111 68 FERDLCINSPTGSGKTLS 85 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (518)
.|+-+.+.+|+|+|||..
T Consensus 19 ~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp CCCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578889999999999975
No 330
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=64.18 E-value=4.9 Score=34.63 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=15.1
Q ss_pred CCCCEEEECCCCchHHHH
Q 010111 68 FERDLCINSPTGSGKTLS 85 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (518)
.|.-+.|.+|+|||||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 466778999999999974
No 331
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=64.10 E-value=5.6 Score=34.16 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=38.6
Q ss_pred CCcEEEEcCChhhHHH-HHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc
Q 010111 332 EEKCIVFTSSVESTHR-LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (518)
Q Consensus 332 ~~~~lVf~~s~~~~~~-l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 394 (518)
..++||.|+++..+.. +.+.+......++.+..++|+.+...+...+. +..+|+|+|.-
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~ 141 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQ 141 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHH
Confidence 5799999999998887 66677665444578888998776543222221 14688998853
No 332
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=64.07 E-value=8.3 Score=35.54 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=20.9
Q ss_pred HHHHHhhCCCCCCCCEEEECCCCchHHHH
Q 010111 57 AVWQETIGPGLFERDLCINSPTGSGKTLS 85 (518)
Q Consensus 57 ~a~~~~~~~~~~~~~~li~apTGsGKT~~ 85 (518)
.++..+.-.+..|+-+.|.+|+|+|||..
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHH
Confidence 34443333455688899999999999975
No 333
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=63.88 E-value=4.6 Score=36.10 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=15.5
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
+..+++.|++|||||..+-
T Consensus 32 ~~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp CEEEEEESCGGGTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998543
No 334
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=63.79 E-value=3.7 Score=34.47 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=15.0
Q ss_pred CCEEEECCCCchHHHHhH
Q 010111 70 RDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (518)
..+++.+++|||||.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458899999999998643
No 335
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=63.66 E-value=3.6 Score=38.83 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=17.9
Q ss_pred hCCCCCCCCE--EEECCCCchHHHHh
Q 010111 63 IGPGLFERDL--CINSPTGSGKTLSY 86 (518)
Q Consensus 63 ~~~~~~~~~~--li~apTGsGKT~~~ 86 (518)
+..++.|.|+ +..++||||||.+.
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 77 VQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhcCCceeEEEEECCCCCCCcEec
Confidence 3445568764 56999999999984
No 336
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=63.55 E-value=3.1 Score=35.62 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=15.2
Q ss_pred CCEEEECCCCchHHHHhH
Q 010111 70 RDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (518)
.-+++.|+.|||||..+-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 578999999999998643
No 337
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=63.50 E-value=33 Score=25.36 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=40.9
Q ss_pred EEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEE
Q 010111 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389 (518)
Q Consensus 335 ~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vL 389 (518)
.+||.+.-+-...+...+...| ..+..+.++.+.+.|.+-++.|.....++-
T Consensus 5 fvvfssdpeilkeivreikrqg---vrvvllysdqdekrrrerleefekqgvdvr 56 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQG---VRVVLLYSDQDEKRRRERLEEFEKQGVDVR 56 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTT---CEEEEEECCSCHHHHHHHHHHHHTTTCEEE
T ss_pred EEEecCCHHHHHHHHHHHHhCC---eEEEEEecCchHHHHHHHHHHHHHcCCcee
Confidence 4567777777777777777766 889999999999999999999987655543
No 338
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=63.45 E-value=17 Score=37.73 Aligned_cols=69 Identities=12% Similarity=0.136 Sum_probs=47.3
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
+.++||++|+++-++.+++.++.. ++++..++|.. ...... .......+|+|||
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~e-R~~v~~--------------------~F~~g~~~VLVaT- 463 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKS-YDTEYP--------------------KCKNGDWDFVITT- 463 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSS-HHHHGG--------------------GGGTCCCSEEEEC-
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHH-HHHHHH--------------------HHHCCCceEEEEC-
Confidence 457999999999999888888765 78889999842 111111 1123457999999
Q ss_pred hHHHHhHhcCCCCCCCcccEEE
Q 010111 181 GRLMDHINATRGFTLEHLCYLV 202 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vV 202 (518)
+.+.. .+++. +++||
T Consensus 464 ----dv~e~--GIDip-v~~VI 478 (673)
T 2wv9_A 464 ----DISEM--GANFG-ASRVI 478 (673)
T ss_dssp ----GGGGT--TCCCC-CSEEE
T ss_pred ----chhhc--ceeeC-CcEEE
Confidence 44444 46676 77766
No 339
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=63.33 E-value=2.9 Score=41.41 Aligned_cols=19 Identities=32% Similarity=0.558 Sum_probs=15.9
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
.+.+++.+|+|+|||..+-
T Consensus 49 p~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp CSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999998643
No 340
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=63.27 E-value=7.1 Score=44.93 Aligned_cols=49 Identities=18% Similarity=0.085 Sum_probs=33.5
Q ss_pred HHHHhhC--CCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCc
Q 010111 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (518)
Q Consensus 58 a~~~~~~--~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt 110 (518)
.++.++. .+..|+.+++.+|+|+|||..++-.+.+.+.. +.+++|++-.
T Consensus 21 ~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~----G~~vlYI~te 71 (1706)
T 3cmw_A 21 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAE 71 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEECTT
T ss_pred HHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhhC----CCceEEEEec
Confidence 3444443 34467899999999999998766656655543 3468888644
No 341
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=63.15 E-value=5.8 Score=34.25 Aligned_cols=28 Identities=25% Similarity=0.065 Sum_probs=20.6
Q ss_pred hhHHHHHHhhCCCCCCCCEEEECCCCchHHHH
Q 010111 54 VQVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (518)
Q Consensus 54 ~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~ 85 (518)
.|..++..+ ..|.-+.+.+|.|+|||..
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHH
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHH
Confidence 355555443 2578889999999999975
No 342
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=63.00 E-value=12 Score=39.54 Aligned_cols=76 Identities=7% Similarity=-0.067 Sum_probs=54.1
Q ss_pred HhcCCCcEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCcc------ccC--
Q 010111 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM------TRG-- 398 (518)
Q Consensus 328 ~~~~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~~G-- 398 (518)
....+.+++|.++|+.-|...++.+.... ..++.+.++.|+++...|.... .++|+|+|+-- ..+
T Consensus 111 ~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~ 184 (853)
T 2fsf_A 111 NALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMA 184 (853)
T ss_dssp HHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhh
Confidence 34456789999999999988888776542 2358899999999986555433 37999999631 222
Q ss_pred -----CCCCCCCEEEE
Q 010111 399 -----MDVEGVNNVVN 409 (518)
Q Consensus 399 -----iDip~v~~VI~ 409 (518)
++...+.++|.
T Consensus 185 ~~~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 185 FSPEERVQRKLHYALV 200 (853)
T ss_dssp SSGGGCCCCSCCEEEE
T ss_pred ccHhHhcccCCcEEEE
Confidence 45567777764
No 343
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=62.76 E-value=3.9 Score=34.96 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=16.4
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
.|.-+.+.||.|||||..+-
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46778899999999997643
No 344
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=62.66 E-value=6.6 Score=45.89 Aligned_cols=55 Identities=16% Similarity=0.054 Sum_probs=37.4
Q ss_pred HHHhhC--CCCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHH
Q 010111 59 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (518)
Q Consensus 59 ~~~~~~--~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~ 118 (518)
++.++. .+..++++++.+|+|+|||..+...+.+.+.. +.+++|++- -++..++.
T Consensus 1069 Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea~k~----Ge~~~Fit~-ee~~~~L~ 1125 (2050)
T 3cmu_A 1069 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDA-EHALDPIY 1125 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT----TCCEEEECT-TSCCCHHH
T ss_pred HHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEEc-cccHHHHH
Confidence 344553 45568999999999999999877666665544 346888863 34444444
No 345
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=62.66 E-value=3.9 Score=41.11 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=16.4
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 010111 69 ERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l 88 (518)
.+.+++.||+|+|||..+-.
T Consensus 77 ~~~lLL~GppGtGKTtla~~ 96 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHL 96 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 36799999999999986443
No 346
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=62.65 E-value=4.7 Score=33.49 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=14.5
Q ss_pred CEEEECCCCchHHHHhH
Q 010111 71 DLCINSPTGSGKTLSYA 87 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (518)
.+++.+++|||||..+-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 68999999999998643
No 347
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=62.60 E-value=3.2 Score=35.14 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=15.9
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
+..+++.|++|||||..+-
T Consensus 9 ~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp SCEEEEEECTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5678999999999998643
No 348
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=62.54 E-value=3.4 Score=39.01 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=17.9
Q ss_pred hCCCCCCCCE--EEECCCCchHHHHh
Q 010111 63 IGPGLFERDL--CINSPTGSGKTLSY 86 (518)
Q Consensus 63 ~~~~~~~~~~--li~apTGsGKT~~~ 86 (518)
+..++.|.|+ +..++||||||.+.
T Consensus 78 v~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 78 VQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHCCcceeEEEeCCCCCCCceEe
Confidence 3344568765 56899999999984
No 349
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=62.39 E-value=3.8 Score=33.85 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=14.9
Q ss_pred CCEEEECCCCchHHHHhH
Q 010111 70 RDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (518)
+.+++.+++|||||.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458899999999998643
No 350
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=62.36 E-value=3.4 Score=35.78 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=14.2
Q ss_pred CEEEECCCCchHHHHhH
Q 010111 71 DLCINSPTGSGKTLSYA 87 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (518)
.+++.|++|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998644
No 351
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=62.28 E-value=3.4 Score=34.90 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=15.3
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
+..+++.|++|||||..+-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3457899999999998643
No 352
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=62.22 E-value=3.9 Score=35.64 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=15.9
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
...+++.|++|||||..+-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4678999999999998644
No 353
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=62.02 E-value=9.4 Score=31.66 Aligned_cols=24 Identities=21% Similarity=-0.022 Sum_probs=16.4
Q ss_pred CEEEECCCCchHHHHhHHHHHHHhh
Q 010111 71 DLCINSPTGSGKTLSYALPIVQTLS 95 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~l~~~~~l~ 95 (518)
-+.+.++.|||||... ..++..+.
T Consensus 6 ~i~i~G~sGsGKTTl~-~~L~~~l~ 29 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM-EKWVAAAV 29 (169)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHhhH
Confidence 4678999999999753 33444444
No 354
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=61.96 E-value=19 Score=35.33 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=47.0
Q ss_pred ccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCCh
Q 010111 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (518)
Q Consensus 102 ~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~ 181 (518)
.++||++|++.-++++++.+... ++++..++|.... .... .......+|+|||
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~-~~~~--------------------~f~~g~~~vLVaT-- 241 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFD-TEYP--------------------KTKLTDWDFVVTT-- 241 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHH-HHGG--------------------GGGSSCCSEEEEC--
T ss_pred CCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHH-HHHH--------------------hhccCCceEEEEC--
Confidence 37999999999999988888764 6778888876541 1111 1123457999999
Q ss_pred HHHHhHhcCCCCCCCcccEEE
Q 010111 182 RLMDHINATRGFTLEHLCYLV 202 (518)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~vV 202 (518)
+.+.. ++++.. ++||
T Consensus 242 ---~v~~~--GiDip~-~~VI 256 (451)
T 2jlq_A 242 ---DISEM--GANFRA-GRVI 256 (451)
T ss_dssp ---GGGGS--SCCCCC-SEEE
T ss_pred ---CHHHh--CcCCCC-CEEE
Confidence 44454 467777 6666
No 355
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=61.92 E-value=3.3 Score=36.32 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=15.3
Q ss_pred CCCEEEECCCCchHHHHh
Q 010111 69 ERDLCINSPTGSGKTLSY 86 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (518)
...+++.|++|||||..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 467899999999999864
No 356
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=61.91 E-value=21 Score=34.75 Aligned_cols=34 Identities=9% Similarity=0.003 Sum_probs=29.2
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQ 138 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~ 138 (518)
+.+++|++|++.-++.+++.++.. +.++..++|+
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~ 204 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRK 204 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCc
Confidence 347999999999999999988876 6788899886
No 357
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=61.83 E-value=3.1 Score=38.12 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=15.2
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
+.-++++||+|||||..+-
T Consensus 33 ~~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp CEEEEEECCTTSCTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4567899999999998533
No 358
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=61.77 E-value=3.8 Score=35.61 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=15.8
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
+..+++.|++|||||..+-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5678999999999998643
No 359
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=61.76 E-value=4.5 Score=35.08 Aligned_cols=76 Identities=9% Similarity=0.130 Sum_probs=50.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcCCC-----ceeEEEccccCChHHHHHHHHHHhcCCceEEEEcC-----cccc-CCC
Q 010111 332 EEKCIVFTSSVESTHRLCTLLNHFGEL-----RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTR-GMD 400 (518)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~-----~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-GiD 400 (518)
+.++||.++++..+..+++.+...... +..+..++|+.+..... +.+ ....+|+|+|. .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 468999999999999998887765321 46788888887653321 111 24578999995 2222 355
Q ss_pred CCCCCEEEEcC
Q 010111 401 VEGVNNVVNYD 411 (518)
Q Consensus 401 ip~v~~VI~~~ 411 (518)
+..+++||.-.
T Consensus 148 ~~~~~~lViDE 158 (219)
T 1q0u_A 148 VHTAHILVVDE 158 (219)
T ss_dssp GGGCCEEEECS
T ss_pred cCcceEEEEcC
Confidence 66777766533
No 360
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=61.70 E-value=8.9 Score=39.59 Aligned_cols=66 Identities=14% Similarity=0.151 Sum_probs=47.8
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
..++||+++|+.-++++++.+++. ++++..++|+.+... +...+.+|+|+|
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~e------------------------r~~~~~~VLVAT- 446 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSV------------------------IPTIGDVVVVAT- 446 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGG------------------------SCSSSCEEEEEC-
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHH------------------------HHhCCCcEEEEC-
Confidence 457999999999999998888764 788999999876432 112345899999
Q ss_pred hHHHHhHhcCCCCCCCcccEEE
Q 010111 181 GRLMDHINATRGFTLEHLCYLV 202 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vV 202 (518)
+.+.. .++++ +++||
T Consensus 447 ----dVaer--GIDId-V~~VI 461 (666)
T 3o8b_A 447 ----DALMT--GYTGD-FDSVI 461 (666)
T ss_dssp ----TTHHH--HCCCC-BSEEE
T ss_pred ----ChHHc--cCCCC-CcEEE
Confidence 34444 34554 77777
No 361
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=61.60 E-value=3.6 Score=34.71 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=14.4
Q ss_pred CCEEEECCCCchHHHHhH
Q 010111 70 RDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (518)
.-+++.+|+|+|||..+-
T Consensus 3 ~ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 456889999999998533
No 362
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=61.57 E-value=4.1 Score=34.82 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=15.5
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
+..+++.|++|||||..+-
T Consensus 20 ~~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998643
No 363
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=61.44 E-value=3.6 Score=36.17 Aligned_cols=18 Identities=39% Similarity=0.541 Sum_probs=11.6
Q ss_pred CCCCEEEECCCCchHHHH
Q 010111 68 FERDLCINSPTGSGKTLS 85 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (518)
.|+-+.+.||+|+|||..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp CCCEEEEECSCC----CH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999975
No 364
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=61.41 E-value=5 Score=34.94 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=16.0
Q ss_pred CCCCEEEECCCCchHHHHhHH
Q 010111 68 FERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l 88 (518)
..+-+++.+|+||||+..+-.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 345678899999999876443
No 365
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=61.36 E-value=15 Score=38.97 Aligned_cols=77 Identities=9% Similarity=0.089 Sum_probs=55.5
Q ss_pred HHhcCCCcEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc-c-----c---
Q 010111 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----T--- 396 (518)
Q Consensus 327 l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-~-----~--- 396 (518)
+....+.+++|.++|+.-|...++++.... ..++.+.++.|+++..+|.... .++|+++|+- + .
T Consensus 147 l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m 220 (922)
T 1nkt_A 147 LNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNM 220 (922)
T ss_dssp HHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTT
T ss_pred HHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhh
Confidence 345557789999999999988888876542 2458999999999987665543 3799999962 1 1
Q ss_pred ----cCCCCCCCCEEEE
Q 010111 397 ----RGMDVEGVNNVVN 409 (518)
Q Consensus 397 ----~GiDip~v~~VI~ 409 (518)
..++...+.++|.
T Consensus 221 ~~~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 221 AHSLDDLVQRGHHYAIV 237 (922)
T ss_dssp CSSGGGCCCCCCCEEEE
T ss_pred hccHhhhccCCCCEEEE
Confidence 1355667777764
No 366
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=61.23 E-value=5.7 Score=35.12 Aligned_cols=77 Identities=13% Similarity=0.218 Sum_probs=51.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc-----ccc---CCCCC
Q 010111 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTR---GMDVE 402 (518)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~---GiDip 402 (518)
+.++||.++++..+..+++.+.... ..++.+..++|+.....+ ......+..+|+|+|.- +.. .+++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 4479999999999999999887753 234677777765432211 11223466799999942 212 46777
Q ss_pred CCCEEEEcC
Q 010111 403 GVNNVVNYD 411 (518)
Q Consensus 403 ~v~~VI~~~ 411 (518)
.+++||.-.
T Consensus 175 ~~~~lViDE 183 (245)
T 3dkp_A 175 SVEWLVVDE 183 (245)
T ss_dssp TCCEEEESS
T ss_pred cCcEEEEeC
Confidence 888877644
No 367
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=61.19 E-value=3.7 Score=35.58 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=14.2
Q ss_pred CEEEECCCCchHHHHhH
Q 010111 71 DLCINSPTGSGKTLSYA 87 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (518)
.+++.|++|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998644
No 368
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=61.09 E-value=1.9 Score=45.81 Aligned_cols=17 Identities=35% Similarity=0.395 Sum_probs=14.9
Q ss_pred CEEEECCCCchHHHHhH
Q 010111 71 DLCINSPTGSGKTLSYA 87 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (518)
++++.||||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999998644
No 369
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=61.09 E-value=2.5 Score=39.47 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=21.8
Q ss_pred hhhHHHHHHh----hCCCCCCCC--EEEECCCCchHHHH
Q 010111 53 PVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLS 85 (518)
Q Consensus 53 ~~Q~~a~~~~----~~~~~~~~~--~li~apTGsGKT~~ 85 (518)
.-|.+.+..+ +..++.|.| ++..|+||||||.+
T Consensus 56 ~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 56 TSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp CCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred CCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceE
Confidence 3466655443 223345766 46699999999998
No 370
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=61.05 E-value=2.3 Score=40.34 Aligned_cols=32 Identities=25% Similarity=0.232 Sum_probs=22.1
Q ss_pred hhHHHHHHhh----CCCCCCCCE--EEECCCCchHHHH
Q 010111 54 VQVAVWQETI----GPGLFERDL--CINSPTGSGKTLS 85 (518)
Q Consensus 54 ~Q~~a~~~~~----~~~~~~~~~--li~apTGsGKT~~ 85 (518)
-|.+.+..+. ..++.|.|+ +.-++||||||.+
T Consensus 84 sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 84 SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp CHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 3766665442 334567664 5689999999998
No 371
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=61.01 E-value=3.2 Score=39.30 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=22.0
Q ss_pred hhhHHHHHH----hhCCCCCCCCE--EEECCCCchHHHH
Q 010111 53 PVQVAVWQE----TIGPGLFERDL--CINSPTGSGKTLS 85 (518)
Q Consensus 53 ~~Q~~a~~~----~~~~~~~~~~~--li~apTGsGKT~~ 85 (518)
.-|.+.+.. ++..++.|.|+ +..|+||||||.+
T Consensus 59 ~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 59 CKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp CCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred CccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceE
Confidence 346655543 23334567664 5699999999997
No 372
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=61.01 E-value=37 Score=30.45 Aligned_cols=62 Identities=13% Similarity=0.202 Sum_probs=41.7
Q ss_pred CCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHH
Q 010111 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEIS 146 (518)
Q Consensus 78 TGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 146 (518)
..+||... +.-++..+.. .+.++||.+.++..+..+.+.+... .++.+..+.|+.+...+..
T Consensus 93 ~~s~K~~~-L~~ll~~~~~---~~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~ 154 (271)
T 1z5z_A 93 RRSGKMIR-TMEIIEEALD---EGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDD 154 (271)
T ss_dssp TTCHHHHH-HHHHHHHHHH---TTCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHH
T ss_pred ccCHHHHH-HHHHHHHHHh---CCCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHH
Confidence 45777764 3334444332 3458999999999888888877653 2567788899887665533
No 373
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=60.79 E-value=5.5 Score=32.26 Aligned_cols=15 Identities=33% Similarity=0.213 Sum_probs=13.1
Q ss_pred CEEEECCCCchHHHH
Q 010111 71 DLCINSPTGSGKTLS 85 (518)
Q Consensus 71 ~~li~apTGsGKT~~ 85 (518)
-.+|.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 468899999999975
No 374
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=60.38 E-value=15 Score=39.06 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=48.3
Q ss_pred HHhcCCCcEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc
Q 010111 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (518)
Q Consensus 327 l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 394 (518)
+....+.+++|.++|..-|...++.+.... ..++.+.++.|+++...|.... .++|+++|..
T Consensus 115 L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 115 LNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp HHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred HHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 445566789999999999998888876542 3468999999999987666654 3799999963
No 375
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=60.37 E-value=5.6 Score=33.43 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=21.7
Q ss_pred EEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHH
Q 010111 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (518)
Q Consensus 72 ~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~ 112 (518)
++|.+++|||||.-+.- +... +..++|+++...
T Consensus 2 ilV~Gg~~SGKS~~A~~-----la~~---~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEA-----LIGD---APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHH-----HHCS---CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHH-----HHhc---CCCeEEEecCCC
Confidence 68999999999975332 2221 335788877543
No 376
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=60.28 E-value=3.5 Score=34.78 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=14.0
Q ss_pred CEEEECCCCchHHHHhH
Q 010111 71 DLCINSPTGSGKTLSYA 87 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (518)
.+++.|+.|||||..+-
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 377
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=59.91 E-value=3.1 Score=39.34 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=23.2
Q ss_pred chhhHHHHHHh----hCCCCCCCCE--EEECCCCchHHHH
Q 010111 52 FPVQVAVWQET----IGPGLFERDL--CINSPTGSGKTLS 85 (518)
Q Consensus 52 ~~~Q~~a~~~~----~~~~~~~~~~--li~apTGsGKT~~ 85 (518)
..-|.+.+..+ +..++.|.|+ +..|+||||||.+
T Consensus 83 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 83 TSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp TCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred CCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceee
Confidence 34576666543 3344568764 5689999999998
No 378
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=59.75 E-value=9.4 Score=40.41 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=16.2
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
.+.+|+.+|+|||||+.+-
T Consensus 511 ~~gvLl~GPPGtGKT~lAk 529 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAK 529 (806)
T ss_dssp CSCCEEESSTTSSHHHHHH
T ss_pred CceEEEecCCCCCchHHHH
Confidence 5789999999999998643
No 379
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=59.69 E-value=4.4 Score=34.80 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=16.6
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
.+.-+++.|+.|||||..+-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 46778999999999998644
No 380
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=59.54 E-value=3.8 Score=34.81 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
+.-+++.|++|||||..+-
T Consensus 12 ~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp SCEEEEEECTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4568899999999998643
No 381
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=59.39 E-value=3.8 Score=34.21 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=16.1
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
.|..+++.++.|||||.++-
T Consensus 4 ~g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 36678899999999998633
No 382
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=59.29 E-value=3.8 Score=34.54 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=14.8
Q ss_pred CCEEEECCCCchHHHHhH
Q 010111 70 RDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (518)
..+++.|++|||||.++-
T Consensus 7 ~~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 457899999999998643
No 383
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=59.26 E-value=5 Score=37.26 Aligned_cols=24 Identities=17% Similarity=-0.058 Sum_probs=18.0
Q ss_pred CCCCEEEECCCCchHHHHhHHHHH
Q 010111 68 FERDLCINSPTGSGKTLSYALPIV 91 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~ 91 (518)
.+..+++.+|+|+|||..+...+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356679999999999986554443
No 384
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=59.19 E-value=6.2 Score=35.23 Aligned_cols=19 Identities=32% Similarity=0.336 Sum_probs=16.8
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
|+.+++.+++|+|||.++-
T Consensus 48 g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TCCEEEECSTTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 8899999999999998643
No 385
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=58.95 E-value=6.4 Score=33.41 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=18.9
Q ss_pred CCcccEEEEechhHh--hhHhHHhHHHHHHH
Q 010111 195 LEHLCYLVVDETDRL--LREAYQAWLPTVLQ 223 (518)
Q Consensus 195 ~~~~~~vViDEah~~--~~~~~~~~~~~i~~ 223 (518)
....+++|+||+..+ .+..+.+.+..++.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 466789999998766 44445555555443
No 386
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=58.89 E-value=5.5 Score=34.35 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=14.2
Q ss_pred CEEEECCCCchHHHHhHH
Q 010111 71 DLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~l 88 (518)
.+++.||+||||+..+-.
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368899999999976443
No 387
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=58.86 E-value=17 Score=36.51 Aligned_cols=76 Identities=11% Similarity=0.171 Sum_probs=49.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc-----cccC-C-CCCC
Q 010111 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTRG-M-DVEG 403 (518)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~G-i-Dip~ 403 (518)
+.++||.++++..+..+.+.+.... ..++.+..+||+.+...+...+. ...+|+|+|.- +..+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 6789999999999998888887652 12488999999987655433222 13689999963 2233 3 5677
Q ss_pred CCEEEEcC
Q 010111 404 VNNVVNYD 411 (518)
Q Consensus 404 v~~VI~~~ 411 (518)
+++||.-.
T Consensus 131 ~~~vViDE 138 (556)
T 4a2p_A 131 FTLMIFDE 138 (556)
T ss_dssp CSEEEEET
T ss_pred CCEEEEEC
Confidence 88887643
No 388
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=58.82 E-value=8.7 Score=37.00 Aligned_cols=42 Identities=10% Similarity=-0.164 Sum_probs=25.2
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhhc--ccCCccEEEEcC
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLP 109 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~~--~~~~~~~lil~P 109 (518)
.|.-+.|.+|+|+|||..+...++..+... ...+.+++|+.-
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 356788999999999986553333332211 112345777753
No 389
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=58.81 E-value=5.6 Score=33.37 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=13.0
Q ss_pred CEEEECCCCchHHHH
Q 010111 71 DLCINSPTGSGKTLS 85 (518)
Q Consensus 71 ~~li~apTGsGKT~~ 85 (518)
.+.+.+|.|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999975
No 390
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=58.71 E-value=8.9 Score=35.66 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=15.4
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 010111 69 ERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l 88 (518)
++-+.+.+++|+|||.....
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34577899999999976443
No 391
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=58.65 E-value=12 Score=33.46 Aligned_cols=60 Identities=8% Similarity=-0.077 Sum_probs=33.8
Q ss_pred HHhhCC-CCCCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHh
Q 010111 60 QETIGP-GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (518)
Q Consensus 60 ~~~~~~-~~~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 124 (518)
+.++.- +..|..+++.+.+|+|||..++--+.+.+.+ +-+++|++-. +-..++.+.++.+
T Consensus 11 D~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~----Ge~~~~~~~~-e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 11 DREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKS----DNLVGMFSIS-YPLQLIIRILSRF 71 (260)
T ss_dssp HHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHT----TCEEEEEECS-SCHHHHHHHHHHT
T ss_pred HHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHC----CCcEEEEEEe-CCHHHHHHHHHHc
Confidence 334432 3356788888777777774333334444443 3367777643 3345566666665
No 392
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=58.64 E-value=2.9 Score=39.70 Aligned_cols=34 Identities=26% Similarity=0.179 Sum_probs=22.5
Q ss_pred chhhHHHHHHh----hCCCCCCCCE--EEECCCCchHHHH
Q 010111 52 FPVQVAVWQET----IGPGLFERDL--CINSPTGSGKTLS 85 (518)
Q Consensus 52 ~~~Q~~a~~~~----~~~~~~~~~~--li~apTGsGKT~~ 85 (518)
..-|.+.+..+ +..++.|.|+ +..|+||||||.+
T Consensus 62 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 62 NASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp TCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred CCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceE
Confidence 34566665443 2233457664 6699999999998
No 393
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=58.63 E-value=5.2 Score=38.15 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=14.9
Q ss_pred CEEEECCCCchHHHHhH
Q 010111 71 DLCINSPTGSGKTLSYA 87 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (518)
.+++.||+|+|||..+-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 79999999999998643
No 394
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=58.62 E-value=2.7 Score=39.95 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=22.1
Q ss_pred chhhHHHHHHh----hCCCCCCCCE--EEECCCCchHHHH
Q 010111 52 FPVQVAVWQET----IGPGLFERDL--CINSPTGSGKTLS 85 (518)
Q Consensus 52 ~~~Q~~a~~~~----~~~~~~~~~~--li~apTGsGKT~~ 85 (518)
..-|.+.+..+ +..++.|.|+ +..|+||||||.+
T Consensus 79 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 79 NAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp TCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred cCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 34566655442 2233457664 5689999999997
No 395
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=58.54 E-value=4.4 Score=34.64 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=14.3
Q ss_pred CCEEEECCCCchHHHHh
Q 010111 70 RDLCINSPTGSGKTLSY 86 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (518)
..+++.|++|||||..+
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45788999999999864
No 396
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=58.52 E-value=5.3 Score=40.42 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=17.1
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
.+..+++.+|+|+|||..+-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57889999999999998643
No 397
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=58.52 E-value=4.2 Score=34.92 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
+.-+++.|+.|||||..+-
T Consensus 4 ~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 5568899999999998643
No 398
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=58.44 E-value=4 Score=43.30 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=17.2
Q ss_pred CCCCEEEECCCCchHHHHhHH
Q 010111 68 FERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l 88 (518)
...++++.||+|+|||..+-.
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHH
Confidence 356899999999999986543
No 399
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=58.42 E-value=20 Score=38.16 Aligned_cols=76 Identities=11% Similarity=0.171 Sum_probs=49.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcCc-----cccC-C-CCCC
Q 010111 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTRG-M-DVEG 403 (518)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~G-i-Dip~ 403 (518)
+.++||.|+++..+....+.+.... ..++.+..+||+.+...+...+. +..+|+|+|.- +..+ + ++..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 6789999999999999888887652 12489999999997655433322 25789999953 2222 3 5567
Q ss_pred CCEEEEcC
Q 010111 404 VNNVVNYD 411 (518)
Q Consensus 404 v~~VI~~~ 411 (518)
+++||.-.
T Consensus 372 ~~~iViDE 379 (797)
T 4a2q_A 372 FTLMIFDE 379 (797)
T ss_dssp CSEEEETT
T ss_pred CCEEEEEC
Confidence 78887643
No 400
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=58.29 E-value=3 Score=39.32 Aligned_cols=35 Identities=29% Similarity=0.189 Sum_probs=22.8
Q ss_pred chhhHHHHHHh----hCCCCCCCCE--EEECCCCchHHHHh
Q 010111 52 FPVQVAVWQET----IGPGLFERDL--CINSPTGSGKTLSY 86 (518)
Q Consensus 52 ~~~Q~~a~~~~----~~~~~~~~~~--li~apTGsGKT~~~ 86 (518)
..-|.+.+..+ +..++.|.|+ +..++||||||.+.
T Consensus 61 ~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 61 DAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp TCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEee
Confidence 34566665543 2333467664 56899999999983
No 401
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=58.09 E-value=39 Score=33.52 Aligned_cols=36 Identities=14% Similarity=0.144 Sum_probs=22.5
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEcC
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~P 109 (518)
..+++++++|+|||..+.--+ ..+.. .+.+++++..
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA-~~l~~---~G~kVllVd~ 137 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLA-YYYQR---KGWKTCLICA 137 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHH-HHHHH---TTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHh---CCCeEEEEec
Confidence 357889999999998644433 23332 2345666653
No 402
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=57.98 E-value=43 Score=34.93 Aligned_cols=79 Identities=19% Similarity=0.053 Sum_probs=52.6
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccc--------------------------------cCceEEEeecCCchHHHHHHh
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPA--------------------------------VGLSVGLAVGQSSIADEISEL 148 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~--------------------------------~~~~v~~~~g~~~~~~~~~~~ 148 (518)
+.++||.+|++.-+..+++.+...... ....+..++|+.+..++..-+
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 457999999999999998888775322 012477888888766553322
Q ss_pred hcCCccccCccCCchhHHHhhcCCCcEEEeCChHHHHhHhcCCCCCCCcccEEEE
Q 010111 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (518)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vVi 203 (518)
. .......+|+||| +.+.. ++++..+++||-
T Consensus 332 ~-----------------~f~~g~~~vlvaT-----~~l~~--Gidip~~~~VI~ 362 (715)
T 2va8_A 332 E-----------------GFRQRKIKVIVAT-----PTLAA--GVNLPARTVIIG 362 (715)
T ss_dssp H-----------------HHHTTCSCEEEEC-----GGGGG--SSCCCBSEEEEC
T ss_pred H-----------------HHHcCCCeEEEEC-----hHHhc--ccCCCceEEEEe
Confidence 1 1122457999999 34443 477778877664
No 403
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=57.96 E-value=8.9 Score=37.37 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=22.4
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~ 108 (518)
..+++.+++|+|||..+...+.. +... +.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~-l~~~---G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARY-IQKR---GLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHH-HHHH---HCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHHc---CCeEEEEe
Confidence 47889999999999765443332 2222 23566664
No 404
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=57.83 E-value=3.2 Score=39.51 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=21.5
Q ss_pred hhHHHHHHh----hCCCCCCCCE--EEECCCCchHHHH
Q 010111 54 VQVAVWQET----IGPGLFERDL--CINSPTGSGKTLS 85 (518)
Q Consensus 54 ~Q~~a~~~~----~~~~~~~~~~--li~apTGsGKT~~ 85 (518)
-|.+.+..+ +..++.|.|+ +..|+||||||.+
T Consensus 69 sQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 69 SQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp CHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 466665543 2233467664 5699999999987
No 405
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=57.75 E-value=3.8 Score=35.30 Aligned_cols=17 Identities=35% Similarity=0.214 Sum_probs=14.4
Q ss_pred CCCEEEECCCCchHHHH
Q 010111 69 ERDLCINSPTGSGKTLS 85 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~ 85 (518)
+.-+.+.||+|||||..
T Consensus 6 ~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred cEEEEEECCCCCCHHHH
Confidence 55678999999999985
No 406
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=57.68 E-value=4.6 Score=33.14 Aligned_cols=17 Identities=18% Similarity=0.087 Sum_probs=14.0
Q ss_pred CEEEECCCCchHHHHhH
Q 010111 71 DLCINSPTGSGKTLSYA 87 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (518)
.+++.+++|||||.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 407
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=57.58 E-value=5.7 Score=33.15 Aligned_cols=16 Identities=31% Similarity=0.189 Sum_probs=13.5
Q ss_pred CEEEECCCCchHHHHh
Q 010111 71 DLCINSPTGSGKTLSY 86 (518)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (518)
-.+|.+|+|+|||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5678999999999753
No 408
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=57.50 E-value=4.8 Score=34.62 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=16.5
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
.+.-+++.|+.|||||..+-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 36678999999999998644
No 409
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=57.41 E-value=4.7 Score=35.66 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCchHHHH
Q 010111 68 FERDLCINSPTGSGKTLS 85 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (518)
.|.-+.+.+|.|||||..
T Consensus 30 ~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 578889999999999973
No 410
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=57.34 E-value=4 Score=34.13 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=11.7
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
+.-+++.|+.|||||..+-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998644
No 411
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=57.31 E-value=7.8 Score=36.01 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=12.9
Q ss_pred CEEEECCCCchHHHH
Q 010111 71 DLCINSPTGSGKTLS 85 (518)
Q Consensus 71 ~~li~apTGsGKT~~ 85 (518)
-+++.++.|+|||..
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 467899999999985
No 412
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=57.18 E-value=11 Score=34.77 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=22.0
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc
Q 010111 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~ 108 (518)
+.-+.+.+|+|+|||.... .+..+... .+.++++..
T Consensus 102 g~vi~lvG~nGsGKTTll~--~Lagll~~--~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIA--KLGRYYQN--LGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHH--HHHHHHHT--TTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHH--HHHHHHHh--cCCEEEEEe
Confidence 4567889999999997533 33333332 233566553
No 413
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=57.06 E-value=6.5 Score=34.51 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=15.9
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
+..+++.|++|||||..+-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4678999999999998644
No 414
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=57.04 E-value=14 Score=38.46 Aligned_cols=80 Identities=16% Similarity=0.229 Sum_probs=43.6
Q ss_pred CCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeec--------CCchHHHHHHhhcCCccccCccCCchhHHHhhc-
Q 010111 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG--------QSSIADEISELIKRPKLEAGICYDPEDVLQELQ- 170 (518)
Q Consensus 100 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 170 (518)
.+.++||.++++.-+..+++.+.......++++..++| +.+..++... .+...
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v------------------~~~F~~ 458 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCI------------------LDAFKA 458 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC---------------------------------------------
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHH------------------HHHHHh
Confidence 34589999999999999999998864333477777765 3333222211 11222
Q ss_pred -CCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEe
Q 010111 171 -SAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204 (518)
Q Consensus 171 -~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViD 204 (518)
...+|+|+| +.+. .++++.++++||.-
T Consensus 459 ~g~~~vLVaT-----~v~~--~GiDip~v~~VI~~ 486 (696)
T 2ykg_A 459 SGDHNILIAT-----SVAD--EGIDIAQCNLVILY 486 (696)
T ss_dssp --CCSCSEEE-----ESSC--CC---CCCSEEEEE
T ss_pred cCCccEEEEe-----chhh--cCCcCccCCEEEEe
Confidence 357899999 2333 35788888888853
No 415
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=56.88 E-value=8.4 Score=36.76 Aligned_cols=20 Identities=30% Similarity=0.189 Sum_probs=16.9
Q ss_pred CCCCCCEEEECCCCchHHHH
Q 010111 66 GLFERDLCINSPTGSGKTLS 85 (518)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~ 85 (518)
+..++.+++.||+|+|||..
T Consensus 166 i~~~~~i~l~G~~GsGKSTl 185 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTL 185 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 44578899999999999975
No 416
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=56.87 E-value=6 Score=34.41 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=15.2
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
+..+.+.||+|||||..+-
T Consensus 5 ~~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3467899999999998643
No 417
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=56.80 E-value=4.4 Score=33.79 Aligned_cols=17 Identities=35% Similarity=0.300 Sum_probs=13.5
Q ss_pred CEEEECCCCchHHHHhH
Q 010111 71 DLCINSPTGSGKTLSYA 87 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (518)
-+.|.+++|||||....
T Consensus 4 ~v~IvG~SGsGKSTL~~ 20 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLIT 20 (171)
T ss_dssp EEEEEESCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999997533
No 418
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=56.72 E-value=11 Score=34.72 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=22.3
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc
Q 010111 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~ 108 (518)
.|.-+.+.+|+|+|||...-. +..+... .+.++++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~--Lag~l~~--~~g~V~l~g 135 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGK--LAHRLKN--EGTKVLMAA 135 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHH--HHHHHHH--TTCCEEEEC
T ss_pred CCcEEEEEcCCCCCHHHHHHH--HHHHHHH--cCCeEEEEe
Confidence 355678999999999985333 3333322 233566653
No 419
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=56.58 E-value=3 Score=39.49 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=21.5
Q ss_pred hhHHHHHHh----hCCCCCCCCE--EEECCCCchHHHH
Q 010111 54 VQVAVWQET----IGPGLFERDL--CINSPTGSGKTLS 85 (518)
Q Consensus 54 ~Q~~a~~~~----~~~~~~~~~~--li~apTGsGKT~~ 85 (518)
-|.+.+..+ +..++.|.|+ +..++||||||.+
T Consensus 83 sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 83 SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp CHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceE
Confidence 466655543 2333467765 5689999999998
No 420
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=56.51 E-value=5.8 Score=36.01 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=19.3
Q ss_pred CCCCCCEEEECCCCchHHHHhHHHH
Q 010111 66 GLFERDLCINSPTGSGKTLSYALPI 90 (518)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~~l~~ 90 (518)
+..|.-+++.||+|+|||..+...+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3357889999999999998655433
No 421
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=56.48 E-value=5.8 Score=33.29 Aligned_cols=21 Identities=24% Similarity=0.115 Sum_probs=16.7
Q ss_pred CCCCEEEECCCCchHHHHhHH
Q 010111 68 FERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l 88 (518)
.+..+++.|+.|||||..+-.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~ 32 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATR 32 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 356788999999999986443
No 422
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=56.41 E-value=3.3 Score=39.13 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=22.0
Q ss_pred hhhHHHHHHh----hCCCCCCCCE--EEECCCCchHHHH
Q 010111 53 PVQVAVWQET----IGPGLFERDL--CINSPTGSGKTLS 85 (518)
Q Consensus 53 ~~Q~~a~~~~----~~~~~~~~~~--li~apTGsGKT~~ 85 (518)
.-|.+.+..+ +..++.|.|+ +..|+||||||.+
T Consensus 71 a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyT 109 (354)
T 3gbj_A 71 AGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYT 109 (354)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHH
T ss_pred ccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceE
Confidence 3466655433 3334467765 5689999999998
No 423
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=56.09 E-value=4.8 Score=38.36 Aligned_cols=34 Identities=29% Similarity=0.276 Sum_probs=22.7
Q ss_pred chhhHHHHHH---hhCCCCCCCCE--EEECCCCchHHHH
Q 010111 52 FPVQVAVWQE---TIGPGLFERDL--CINSPTGSGKTLS 85 (518)
Q Consensus 52 ~~~Q~~a~~~---~~~~~~~~~~~--li~apTGsGKT~~ 85 (518)
..-|.+.+.. ++..++.|.|+ +..++||||||.+
T Consensus 94 ~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 94 GSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp TCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred cccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceE
Confidence 3456665543 23444567664 5689999999997
No 424
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=55.92 E-value=75 Score=31.36 Aligned_cols=36 Identities=17% Similarity=-0.026 Sum_probs=26.7
Q ss_pred ccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHh
Q 010111 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (518)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~ 86 (518)
+|-.-=.++++.++ .+-.|+..+|.|+.|+|||..+
T Consensus 144 epl~TGikaID~l~-PigrGQR~~Ifg~~g~GKT~l~ 179 (513)
T 3oaa_A 144 QPVQTGYKAVDSMI-PIGRGQRELIIGDRQTGKTALA 179 (513)
T ss_dssp CBCCCSCHHHHHHS-CCBTTCBCEEEESSSSSHHHHH
T ss_pred cccccceeeecccc-ccccCCEEEeecCCCCCcchHH
Confidence 44444456777655 4557899999999999999874
No 425
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=55.80 E-value=5 Score=36.05 Aligned_cols=19 Identities=16% Similarity=0.095 Sum_probs=15.3
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
..-++++|++|||||..+-
T Consensus 4 ~~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHH
Confidence 3467899999999998644
No 426
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=55.60 E-value=5.2 Score=34.29 Aligned_cols=16 Identities=31% Similarity=0.279 Sum_probs=13.4
Q ss_pred CEEEECCCCchHHHHh
Q 010111 71 DLCINSPTGSGKTLSY 86 (518)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (518)
.+.+.|+.|||||.++
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999853
No 427
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=55.28 E-value=5.3 Score=33.66 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=13.5
Q ss_pred EEEECCCCchHHHHhH
Q 010111 72 LCINSPTGSGKTLSYA 87 (518)
Q Consensus 72 ~li~apTGsGKT~~~~ 87 (518)
+++.|+.|||||..+-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998643
No 428
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=55.18 E-value=5.4 Score=33.74 Aligned_cols=17 Identities=29% Similarity=0.474 Sum_probs=13.9
Q ss_pred EEEECCCCchHHHHhHH
Q 010111 72 LCINSPTGSGKTLSYAL 88 (518)
Q Consensus 72 ~li~apTGsGKT~~~~l 88 (518)
+++.|+.|||||..+-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999986443
No 429
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=54.92 E-value=4.9 Score=34.35 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.6
Q ss_pred CEEEECCCCchHHHHh
Q 010111 71 DLCINSPTGSGKTLSY 86 (518)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (518)
.+.+.|+.|||||..+
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999853
No 430
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=54.88 E-value=6.2 Score=42.06 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=17.0
Q ss_pred CCCCCEEEECCCCchHHHHh
Q 010111 67 LFERDLCINSPTGSGKTLSY 86 (518)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~ 86 (518)
..++.+++.+|+|||||..+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHH
Confidence 35788999999999999853
No 431
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=54.87 E-value=5.4 Score=35.27 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=15.9
Q ss_pred CCCCEEEECCCCchHHHH
Q 010111 68 FERDLCINSPTGSGKTLS 85 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (518)
.|+-+.+.+|.|+|||..
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578889999999999974
No 432
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=54.78 E-value=5.4 Score=34.42 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=16.4
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
.+.-+++.|++|||||..+-
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46778899999999998643
No 433
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=54.69 E-value=6.9 Score=33.24 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=13.9
Q ss_pred CEEEECCCCchHHHHhH
Q 010111 71 DLCINSPTGSGKTLSYA 87 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (518)
.+++.|++|||||..+-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 36899999999998533
No 434
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=54.68 E-value=5 Score=34.71 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=14.1
Q ss_pred CEEEECCCCchHHHHhH
Q 010111 71 DLCINSPTGSGKTLSYA 87 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (518)
.+++.|++|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 435
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=54.37 E-value=6 Score=36.55 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=16.4
Q ss_pred CCCCCEEEECCCCchHHHH
Q 010111 67 LFERDLCINSPTGSGKTLS 85 (518)
Q Consensus 67 ~~~~~~li~apTGsGKT~~ 85 (518)
..|+-+.+.+|+|+|||..
T Consensus 78 ~~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp CTTCEEEEESSSCHHHHHH
T ss_pred cCCCEEEEECCCCchHHHH
Confidence 3578899999999999984
No 436
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=54.31 E-value=26 Score=38.10 Aligned_cols=101 Identities=17% Similarity=0.187 Sum_probs=51.1
Q ss_pred CchHHHHhHHHHHHHhhhcccCCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecC--------CchHHHHHHhhc
Q 010111 79 GSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQ--------SSIADEISELIK 150 (518)
Q Consensus 79 GsGKT~~~~l~~~~~l~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~--------~~~~~~~~~~~~ 150 (518)
.++|... +.-++...... ..+.++||.++++..+..+.+.+.......++++..+.|. .+..++...
T Consensus 611 ~~~K~~~-L~~lL~~~~~~-~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~i--- 685 (936)
T 4a2w_A 611 ENPKLEE-LVCILDDAYRY-NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGV--- 685 (936)
T ss_dssp CCHHHHH-HHHHHHHTTTS-CTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-----------------------
T ss_pred CCHHHHH-HHHHHHHHhcc-CCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHH---
Confidence 4666654 22233322211 2456899999999999999999988633334555555443 333322211
Q ss_pred CCccccCccCCchhHHHhhc--CCCcEEEeCChHHHHhHhcCCCCCCCcccEEEEech
Q 010111 151 RPKLEAGICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206 (518)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~--~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEa 206 (518)
.+... ...+|+|+| +.+. .++++..+++||.=+.
T Consensus 686 ---------------l~~Fr~~g~~~VLVaT-----~~~~--eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 686 ---------------LDAFKTSKDNRLLIAT-----SVAD--EGIDIVQCNLVVLYEY 721 (936)
T ss_dssp -----------------------CCSEEEEE-----CC--------CCCCSEEEEESC
T ss_pred ---------------HHHhhccCCeeEEEEe-----Cchh--cCCcchhCCEEEEeCC
Confidence 11222 357899999 3333 3578888999886443
No 437
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=54.29 E-value=4.2 Score=39.72 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=22.7
Q ss_pred hhhHHHHHHh----hCCCCCCCCE--EEECCCCchHHHH
Q 010111 53 PVQVAVWQET----IGPGLFERDL--CINSPTGSGKTLS 85 (518)
Q Consensus 53 ~~Q~~a~~~~----~~~~~~~~~~--li~apTGsGKT~~ 85 (518)
.-|.+.+..+ +..++.|.|+ +..|.||||||.+
T Consensus 115 asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyT 153 (443)
T 2owm_A 115 ATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYT 153 (443)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred CCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEE
Confidence 4577766543 2333467664 6699999999998
No 438
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=54.16 E-value=40 Score=34.95 Aligned_cols=79 Identities=19% Similarity=0.255 Sum_probs=53.9
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCChHH
Q 010111 104 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183 (518)
Q Consensus 104 ~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp~~l 183 (518)
.+++++++.-+.++++.+... +..+..++|+.+...+...... ++.-....+|+|||
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~---------------F~~~~g~~~VLVAT---- 379 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKK---------------FNDPNDPCKILVAT---- 379 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHH---------------HHCTTSSCCEEEEC----
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHH---------------HHccCCCeEEEEeC----
Confidence 466688888888888888774 6889999999987654332211 00001347999999
Q ss_pred HHhHhcCCCCCCCcccEEEEechhHh
Q 010111 184 MDHINATRGFTLEHLCYLVVDETDRL 209 (518)
Q Consensus 184 ~~~l~~~~~~~~~~~~~vViDEah~~ 209 (518)
+.+.. ++++ .+++||.-.....
T Consensus 380 -di~e~--GlDi-~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 380 -DAIGM--GLNL-SIRRIIFYSLIKP 401 (677)
T ss_dssp -GGGGS--SCCC-CBSEEEESCSBC-
T ss_pred -cHHHC--CcCc-CccEEEECCcccc
Confidence 34444 5778 8999998877654
No 439
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=54.03 E-value=5.8 Score=37.54 Aligned_cols=17 Identities=35% Similarity=0.294 Sum_probs=14.7
Q ss_pred CCC--EEEECCCCchHHHH
Q 010111 69 ERD--LCINSPTGSGKTLS 85 (518)
Q Consensus 69 ~~~--~li~apTGsGKT~~ 85 (518)
|.+ ++..|+||||||.+
T Consensus 83 G~n~tifAYGqTGSGKTyT 101 (360)
T 1ry6_A 83 GCVCSCFAYGQTGSGKTYT 101 (360)
T ss_dssp CCEEEEEEECCTTSSHHHH
T ss_pred CceeEEEeeCCCCCCCCEE
Confidence 666 57899999999998
No 440
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=53.87 E-value=7.2 Score=37.08 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=14.1
Q ss_pred CEEEECCCCchHHHHhH
Q 010111 71 DLCINSPTGSGKTLSYA 87 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (518)
-.+|.||+|+|||..+-
T Consensus 25 ~~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 56799999999997643
No 441
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=53.83 E-value=5.6 Score=34.68 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=14.0
Q ss_pred CEEEECCCCchHHHHhH
Q 010111 71 DLCINSPTGSGKTLSYA 87 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (518)
.+++.|++|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36899999999998643
No 442
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=53.64 E-value=6.5 Score=39.13 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=15.2
Q ss_pred CCEEEECCCCchHHHHhH
Q 010111 70 RDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (518)
+.+++.+|+|+|||..+-
T Consensus 65 ~GvLL~GppGtGKTtLar 82 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLAR 82 (499)
T ss_dssp SEEEEECSSSSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 569999999999998643
No 443
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=53.37 E-value=5.8 Score=35.18 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=15.8
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
+..+++.||.|||||..+-
T Consensus 29 ~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4578999999999998644
No 444
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=53.12 E-value=8 Score=34.49 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCchHHHHh
Q 010111 68 FERDLCINSPTGSGKTLSY 86 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (518)
.+..+.|.+|+|||||..+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567889999999999853
No 445
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=52.87 E-value=14 Score=34.26 Aligned_cols=15 Identities=20% Similarity=0.322 Sum_probs=12.8
Q ss_pred EEEECCCCchHHHHh
Q 010111 72 LCINSPTGSGKTLSY 86 (518)
Q Consensus 72 ~li~apTGsGKT~~~ 86 (518)
+.+.||+|||||..+
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 568999999999763
No 446
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=52.61 E-value=5.5 Score=42.16 Aligned_cols=18 Identities=39% Similarity=0.658 Sum_probs=15.9
Q ss_pred CCCEEEECCCCchHHHHh
Q 010111 69 ERDLCINSPTGSGKTLSY 86 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (518)
.+.+|+.+|+|||||+.+
T Consensus 238 p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 478999999999999864
No 447
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=52.52 E-value=38 Score=34.74 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=46.8
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
..++||.++|+.-++.+++.+... ++++..++|... ...... ......+|+|||
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R-~~~l~~--------------------F~~g~~~VLVaT- 408 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTF-DTEYPK--------------------TKLTDWDFVVTT- 408 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTH-HHHTTH--------------------HHHSCCSEEEEC-
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHH-HHHHHh--------------------hcCCCcEEEEEC-
Confidence 347999999999999999988875 678888887521 111111 123457999999
Q ss_pred hHHHHhHhcCCCCCCCcccEEE
Q 010111 181 GRLMDHINATRGFTLEHLCYLV 202 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vV 202 (518)
+.+.. .+++. +++||
T Consensus 409 ----dv~~r--GiDi~-v~~VI 423 (618)
T 2whx_A 409 ----DISEM--GANFR-AGRVI 423 (618)
T ss_dssp ----GGGGT--TCCCC-CSEEE
T ss_pred ----cHHHc--CcccC-ceEEE
Confidence 44454 46664 77764
No 448
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=52.26 E-value=7.6 Score=33.64 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=15.5
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
+..+++.+++|||||..+-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568899999999998643
No 449
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=52.22 E-value=15 Score=44.47 Aligned_cols=19 Identities=37% Similarity=0.630 Sum_probs=16.8
Q ss_pred CCCCEEEECCCCchHHHHh
Q 010111 68 FERDLCINSPTGSGKTLSY 86 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (518)
.++.++++||||||||..+
T Consensus 1266 ~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4799999999999999863
No 450
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=52.15 E-value=7 Score=32.57 Aligned_cols=20 Identities=15% Similarity=0.041 Sum_probs=16.8
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
.|+-+++.++.|+|||..++
T Consensus 15 ~G~gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSL 34 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHH
Confidence 47889999999999997644
No 451
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=51.72 E-value=5.6 Score=37.95 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=13.6
Q ss_pred CCEEEECCCCchHHHH
Q 010111 70 RDLCINSPTGSGKTLS 85 (518)
Q Consensus 70 ~~~li~apTGsGKT~~ 85 (518)
.-.+|.|+||+|||..
T Consensus 26 gl~vi~G~NGaGKT~i 41 (371)
T 3auy_A 26 GIVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4468999999999986
No 452
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=51.65 E-value=6.4 Score=36.97 Aligned_cols=34 Identities=26% Similarity=0.181 Sum_probs=22.3
Q ss_pred hhhHHHHHHhh----CCCCCCCCE--EEECCCCchHHHHh
Q 010111 53 PVQVAVWQETI----GPGLFERDL--CINSPTGSGKTLSY 86 (518)
Q Consensus 53 ~~Q~~a~~~~~----~~~~~~~~~--li~apTGsGKT~~~ 86 (518)
.-|.+.+..+. ..++.|.|+ +..|+||||||.+.
T Consensus 73 ~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 73 ISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp CCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred CCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 45666655432 233457664 66899999999983
No 453
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=51.34 E-value=6.6 Score=35.28 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=16.0
Q ss_pred CCCCEEEECCCCchHHHH
Q 010111 68 FERDLCINSPTGSGKTLS 85 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (518)
.|.-+.+.+|.|+|||..
T Consensus 45 ~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578889999999999974
No 454
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=51.24 E-value=8.7 Score=34.00 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=15.1
Q ss_pred CCCEEEECCCCchHHHHh
Q 010111 69 ERDLCINSPTGSGKTLSY 86 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (518)
+..+++.||.|||||..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 467889999999999853
No 455
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=51.21 E-value=15 Score=34.82 Aligned_cols=19 Identities=32% Similarity=0.343 Sum_probs=15.3
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
|.-+.+.+|+|+|||....
T Consensus 157 g~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHH
Confidence 4567899999999998643
No 456
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=51.17 E-value=11 Score=39.31 Aligned_cols=74 Identities=9% Similarity=0.149 Sum_probs=54.3
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCChHHHHHHHHHHhcCCceEEEEcC-----ccccCCC-CCCC
Q 010111 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTRGMD-VEGV 404 (518)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~GiD-ip~v 404 (518)
.+.++++.+|++.-+...++.++.....+..+..++|+....++ ..+..+|+|+|+ .+..+.. +..+
T Consensus 67 ~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~ 139 (702)
T 2p6r_A 67 KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRASWIKAV 139 (702)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCSGGGGC
T ss_pred hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChhHHhhc
Confidence 36799999999999999999986655556899999998876443 124789999996 2333333 5677
Q ss_pred CEEEEcC
Q 010111 405 NNVVNYD 411 (518)
Q Consensus 405 ~~VI~~~ 411 (518)
++||.-.
T Consensus 140 ~~vIiDE 146 (702)
T 2p6r_A 140 SCLVVDE 146 (702)
T ss_dssp CEEEETT
T ss_pred CEEEEee
Confidence 8877543
No 457
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=51.05 E-value=6.7 Score=36.64 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=14.9
Q ss_pred CCCC--EEEECCCCchHHHH
Q 010111 68 FERD--LCINSPTGSGKTLS 85 (518)
Q Consensus 68 ~~~~--~li~apTGsGKT~~ 85 (518)
.|.| ++..++||||||.+
T Consensus 78 ~G~n~tifAYGqTGSGKTyT 97 (330)
T 2h58_A 78 DGFNVCIFAYGQTGAGKTYT 97 (330)
T ss_dssp TTCCEEEEEESSTTSSHHHH
T ss_pred CCCEEEEEeECCCCCCCcEE
Confidence 5766 45699999999987
No 458
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=50.91 E-value=90 Score=30.77 Aligned_cols=38 Identities=16% Similarity=0.029 Sum_probs=27.7
Q ss_pred CccchhhHHHHHHhhCCCCCCCCEEEECCCCchHHHHhH
Q 010111 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~ 87 (518)
.+|-..=.++++.++ ++-.|+..+|.|+.|+|||..++
T Consensus 143 ~epl~TGiraID~l~-PigrGQR~~Ifg~~g~GKT~Lal 180 (502)
T 2qe7_A 143 HEPLQTGIKAIDSMI-PIGRGQRELIIGDRQTGKTTIAI 180 (502)
T ss_dssp CSBCCCSCHHHHHSS-CCBTTCBCEEEECSSSCHHHHHH
T ss_pred CCccccceeeccccc-ccccCCEEEEECCCCCCchHHHH
Confidence 344444457777654 45579999999999999998643
No 459
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=50.78 E-value=8.3 Score=33.43 Aligned_cols=31 Identities=13% Similarity=0.029 Sum_probs=22.1
Q ss_pred CCcccEEEEechhHhhhHhHHhHHHHHHHhc
Q 010111 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (518)
Q Consensus 195 ~~~~~~vViDEah~~~~~~~~~~~~~i~~~~ 225 (518)
..+.+++++||--.-+|......+..++..+
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~ 179 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEI 179 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 4557789999988888877666666655544
No 460
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=50.77 E-value=7 Score=37.67 Aligned_cols=20 Identities=35% Similarity=0.418 Sum_probs=15.9
Q ss_pred CCCCCE--EEECCCCchHHHHh
Q 010111 67 LFERDL--CINSPTGSGKTLSY 86 (518)
Q Consensus 67 ~~~~~~--li~apTGsGKT~~~ 86 (518)
+.|.|+ +..|+||||||.+.
T Consensus 137 l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 137 LDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HTTCCEEEEEESCTTSSHHHHH
T ss_pred hCCcceEEEEECCCCCCCceEe
Confidence 357765 56899999999984
No 461
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=50.75 E-value=6.4 Score=37.89 Aligned_cols=34 Identities=24% Similarity=0.188 Sum_probs=21.8
Q ss_pred hhhHHHHHHh----hCCCCCCCC--EEEECCCCchHHHHh
Q 010111 53 PVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (518)
Q Consensus 53 ~~Q~~a~~~~----~~~~~~~~~--~li~apTGsGKT~~~ 86 (518)
.-|.+.+..+ +..++.|.| ++..|.||||||.+.
T Consensus 133 ~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 133 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp CCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred CChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 4466555432 223345765 466899999999983
No 462
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=50.44 E-value=68 Score=32.44 Aligned_cols=82 Identities=12% Similarity=0.116 Sum_probs=50.8
Q ss_pred CCccEEEEcCcHHHHHHHHHHHHHhccc----cCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcC----
Q 010111 100 RCLRALVVLPTRDLALQVKDVFAAIAPA----VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS---- 171 (518)
Q Consensus 100 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~----~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 171 (518)
.+.++||+|+++.-+..+++.+...... .+-.+..++|..+. .+... .+....
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~------------------l~~F~~~~~~ 498 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGH------------------LSRFQELETS 498 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHH------------------HHHHHCTTCC
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHH------------------HHHHhCCCCC
Confidence 4468999999999999999999876432 12235667776543 11111 111222
Q ss_pred CCcEEEeCChHHHHhHhcCCCCCCCcccEEEEechh
Q 010111 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (518)
Q Consensus 172 ~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah 207 (518)
.+.|+||| +.+.. ++++..+++||++..-
T Consensus 499 ~~~ilvtt-----~~l~~--GiDip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 499 TPVILTTS-----QLLTT--GVDAPTCKNVVLARVV 527 (590)
T ss_dssp CCCEEEES-----STTTT--TCCCTTEEEEEEESCC
T ss_pred CCEEEEEC-----Chhhc--CccchheeEEEEEecC
Confidence 12366776 33333 5788899999987653
No 463
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=50.04 E-value=15 Score=27.63 Aligned_cols=37 Identities=16% Similarity=0.301 Sum_probs=31.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCCh
Q 010111 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 371 (518)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~ 371 (518)
..+++++|.+-..+...+..|...| +.+..+.|++..
T Consensus 55 ~~~ivvyC~~G~rs~~aa~~L~~~G---~~v~~l~GG~~~ 91 (108)
T 3gk5_A 55 DKKYAVICAHGNRSAAAVEFLSQLG---LNIVDVEGGIQS 91 (108)
T ss_dssp TSCEEEECSSSHHHHHHHHHHHTTT---CCEEEETTHHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcC---CCEEEEcCcHHH
Confidence 5689999999888999999999877 688889998754
No 464
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=49.93 E-value=9.9 Score=32.57 Aligned_cols=17 Identities=29% Similarity=0.169 Sum_probs=13.8
Q ss_pred CCEEEECCCCchHHHHh
Q 010111 70 RDLCINSPTGSGKTLSY 86 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (518)
.-.+|.+|+|+|||...
T Consensus 24 ~~~~I~G~NgsGKStil 40 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 34688999999999763
No 465
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=49.74 E-value=8.3 Score=32.69 Aligned_cols=18 Identities=33% Similarity=0.298 Sum_probs=14.5
Q ss_pred CCEEEECCCCchHHHHhH
Q 010111 70 RDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (518)
..+.|.+++|||||.++-
T Consensus 9 ~~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAA 26 (203)
T ss_dssp EEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357889999999998643
No 466
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=49.58 E-value=16 Score=26.87 Aligned_cols=37 Identities=11% Similarity=0.196 Sum_probs=31.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCCh
Q 010111 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 371 (518)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~ 371 (518)
..+++++|.+-..+...+..|...| +.+..+.|++..
T Consensus 56 ~~~ivvyC~~g~rs~~a~~~L~~~G---~~v~~l~GG~~~ 92 (100)
T 3foj_A 56 NETYYIICKAGGRSAQVVQYLEQNG---VNAVNVEGGMDE 92 (100)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTT---CEEEEETTHHHH
T ss_pred CCcEEEEcCCCchHHHHHHHHHHCC---CCEEEecccHHH
Confidence 5689999999888999999998876 678888888653
No 467
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=49.51 E-value=17 Score=26.28 Aligned_cols=36 Identities=8% Similarity=0.009 Sum_probs=30.2
Q ss_pred CcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCCh
Q 010111 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 371 (518)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~ 371 (518)
.+++++|.+-..+...+..|...| +.+..+.|++..
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G---~~v~~l~GG~~~ 89 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEG---YEAMSLEGGLQA 89 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHT---CCEEEETTGGGC
T ss_pred CCEEEEcCCCChHHHHHHHHHHcC---CcEEEEcccHHH
Confidence 689999999888899999999877 567788888753
No 468
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=49.49 E-value=7.3 Score=33.69 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=14.5
Q ss_pred CCEEEECCCCchHHHHhH
Q 010111 70 RDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (518)
..+.+.++.|||||.++-
T Consensus 5 ~~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVAN 22 (218)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999998533
No 469
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=49.46 E-value=7.7 Score=32.99 Aligned_cols=18 Identities=17% Similarity=0.291 Sum_probs=14.4
Q ss_pred CCEEEECCCCchHHHHhH
Q 010111 70 RDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (518)
..+.+.|+.|||||.++-
T Consensus 13 ~iIgltG~~GSGKSTva~ 30 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 356789999999998643
No 470
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=49.40 E-value=11 Score=37.92 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=26.4
Q ss_pred HHHHhhC-CCCCCCCEEEECCCCchHHHHhHHHHHHHhhh
Q 010111 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (518)
Q Consensus 58 a~~~~~~-~~~~~~~~li~apTGsGKT~~~~l~~~~~l~~ 96 (518)
++..+.- .+..|.-+++.+|+|||||..+..-++.-+..
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 4444443 45568899999999999998655543444444
No 471
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=49.33 E-value=13 Score=35.00 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=20.2
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCc
Q 010111 27 CPLDHLPCLDPRLKVALQNMGISS 50 (518)
Q Consensus 27 ~~~~~~~~l~~~~~~~l~~~g~~~ 50 (518)
.+++.++|+++...+.|++.||.+
T Consensus 35 ~~l~~l~Gi~~~~~~kL~~ag~~t 58 (349)
T 1pzn_A 35 RSIEDLPGVGPATAEKLREAGYDT 58 (349)
T ss_dssp CCSSCCTTCCHHHHHHHHTTTCCS
T ss_pred ccHHHcCCCCHHHHHHHHHcCCCc
Confidence 356777899999999999999974
No 472
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=49.29 E-value=10 Score=31.03 Aligned_cols=19 Identities=26% Similarity=0.202 Sum_probs=15.7
Q ss_pred CCCCCEEEECCCCchHHHH
Q 010111 67 LFERDLCINSPTGSGKTLS 85 (518)
Q Consensus 67 ~~~~~~li~apTGsGKT~~ 85 (518)
..|.-+.+.+|.|+|||..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567788999999999974
No 473
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=49.24 E-value=31 Score=37.55 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=56.6
Q ss_pred CCccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcC---CCcEE
Q 010111 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS---AVDIL 176 (518)
Q Consensus 100 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Ii 176 (518)
.+.+++|+|+++.-+..+.+.+... .++++..++|+.+...+...+. .+.. .++|+
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~---~g~~~~~lhG~~~~~~R~~~l~------------------~F~~g~~~~~vL 560 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRER---EGIRAAVFHEGMSIIERDRAAA------------------WFAEEDTGAQVL 560 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTT---TCCCEEEECTTSCTTHHHHHHH------------------HHHSTTSSCEEE
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHH------------------HHhCCCCcccEE
Confidence 4558999999999988888877742 3788999999987655433221 2222 38999
Q ss_pred EeCChHHHHhHhcCCCCCCCcccEEEEechh
Q 010111 177 VATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (518)
Q Consensus 177 v~Tp~~l~~~l~~~~~~~~~~~~~vViDEah 207 (518)
|+| .. +. .++++..+++||+-+..
T Consensus 561 vaT-~v----~~--~GlDl~~~~~VI~~d~p 584 (968)
T 3dmq_A 561 LCS-EI----GS--EGRNFQFASHMVMFDLP 584 (968)
T ss_dssp ECS-CC----TT--CSSCCTTCCEEECSSCC
T ss_pred Eec-ch----hh--cCCCcccCcEEEEecCC
Confidence 999 22 22 46788889999987765
No 474
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=49.22 E-value=15 Score=27.19 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=30.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcCCCceeEEEccccCCh
Q 010111 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 371 (518)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~ 371 (518)
..+++++|.+-..+...+..|...| +.+..+.|++..
T Consensus 56 ~~~iv~yC~~g~rs~~a~~~L~~~G---~~v~~l~GG~~~ 92 (103)
T 3eme_A 56 NEIYYIVCAGGVRSAKVVEYLEANG---IDAVNVEGGMHA 92 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTT---CEEEEETTHHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHCC---CCeEEeCCCHHH
Confidence 5689999999888999999998876 678888888653
No 475
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=49.13 E-value=16 Score=35.50 Aligned_cols=43 Identities=26% Similarity=0.184 Sum_probs=25.1
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHhhhcccCCccEEEEc--CcHHHHH
Q 010111 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLAL 115 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~~l~~~~~l~~~~~~~~~~lil~--Pt~~La~ 115 (518)
+.+++++++|+|||.+..--+. .+... .+.+++++. |.+..+.
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~-~l~~~--~G~kVllvd~D~~r~~a~ 145 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGK-FLREK--HKKKVLVVSADVYRPAAI 145 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH-HHHHT--SCCCEEEEECCCSSTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHHh--cCCeEEEEecCCCCccHH
Confidence 4577889999999987554333 33321 134677664 4444443
No 476
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=48.95 E-value=7.5 Score=36.63 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=22.7
Q ss_pred cchhhHHHHHHh----hCCCCCCCCE--EEECCCCchHHHH
Q 010111 51 LFPVQVAVWQET----IGPGLFERDL--CINSPTGSGKTLS 85 (518)
Q Consensus 51 ~~~~Q~~a~~~~----~~~~~~~~~~--li~apTGsGKT~~ 85 (518)
+..-|.+.+..+ +..++.|.|+ +..|+||||||.+
T Consensus 66 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 66 QTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEE
Confidence 334566665442 2333457664 5699999999997
No 477
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=48.79 E-value=8.3 Score=34.30 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.9
Q ss_pred CCCCEEEECCCCchHHHH
Q 010111 68 FERDLCINSPTGSGKTLS 85 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (518)
.|.-+.+.+|.|+|||..
T Consensus 34 ~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578889999999999984
No 478
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=48.75 E-value=16 Score=34.12 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=15.0
Q ss_pred CCCEEEECCCCchHHHHh
Q 010111 69 ERDLCINSPTGSGKTLSY 86 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (518)
|.-+.+.+|+|+|||...
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 566789999999999753
No 479
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=48.74 E-value=6.4 Score=34.93 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCchHHHH
Q 010111 68 FERDLCINSPTGSGKTLS 85 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (518)
.|.-+.+.+|.|+|||..
T Consensus 27 ~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp TTEEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577889999999999974
No 480
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=48.57 E-value=8.4 Score=33.79 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=15.9
Q ss_pred CCCCEEEECCCCchHHHH
Q 010111 68 FERDLCINSPTGSGKTLS 85 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (518)
.|+-+.+.+|.|+|||..
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578889999999999974
No 481
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=48.44 E-value=9.7 Score=34.83 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=13.8
Q ss_pred CCEEEECCCCchHHHHh
Q 010111 70 RDLCINSPTGSGKTLSY 86 (518)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (518)
.-+.|.|++|||||..+
T Consensus 32 ~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45678999999999764
No 482
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=48.40 E-value=8.2 Score=34.99 Aligned_cols=30 Identities=17% Similarity=-0.001 Sum_probs=20.2
Q ss_pred CcccEEEEechhHhhhHhHHhHHHHHHHhc
Q 010111 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (518)
Q Consensus 196 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~ 225 (518)
.+.+++++||-=.-+|......+..++..+
T Consensus 160 ~~P~lLlLDEPts~LD~~~~~~i~~~l~~l 189 (275)
T 3gfo_A 160 MEPKVLILDEPTAGLDPMGVSEIMKLLVEM 189 (275)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 456788888877777776666655555544
No 483
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=48.21 E-value=3.8 Score=40.67 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=0.0
Q ss_pred CccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhcCCccccCccCCchhHHHhhcCCCcEEEeCC
Q 010111 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (518)
Q Consensus 101 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 180 (518)
..++||.||++.-+..+++.+... +..+..++|+.+...+...+.. ......+|+|||
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~-----------------f~~g~~~iLv~T- 390 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIER-----------------FREGKEKVLVTT- 390 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHH-----------------HHcCCCcEEEEc-
Confidence 347999999999888888877764 6778888888765544222111 112346899999
Q ss_pred hHHHHhHhcCCCCCCCcccEEE
Q 010111 181 GRLMDHINATRGFTLEHLCYLV 202 (518)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vV 202 (518)
+.+.. ++++.++++||
T Consensus 391 ----~~~~~--GlDip~v~~VI 406 (479)
T 3fmp_B 391 ----NVCAR--GIDVEQVSVVI 406 (479)
T ss_dssp ----------------------
T ss_pred ----ccccc--CCccccCCEEE
Confidence 33433 57777888886
No 484
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=48.20 E-value=7.9 Score=34.82 Aligned_cols=30 Identities=17% Similarity=0.087 Sum_probs=20.4
Q ss_pred CcccEEEEechhHhhhHhHHhHHHHHHHhc
Q 010111 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (518)
Q Consensus 196 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~ 225 (518)
.+.+++++||--.-+|......+..++..+
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l 199 (262)
T 1b0u_A 170 MEPDVLLFDEPTSALDPELVGEVLRIMQQL 199 (262)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 446688888877777776666666655544
No 485
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=48.13 E-value=14 Score=33.93 Aligned_cols=20 Identities=20% Similarity=0.213 Sum_probs=15.2
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 010111 69 ERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~l 88 (518)
++-+++.+++|+|||..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34567899999999976443
No 486
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=48.06 E-value=8.4 Score=40.79 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=14.9
Q ss_pred CEEEECCCCchHHHHhH
Q 010111 71 DLCINSPTGSGKTLSYA 87 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (518)
++++.||||+|||..+-
T Consensus 490 ~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 68999999999998654
No 487
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=47.97 E-value=7.2 Score=36.75 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=21.2
Q ss_pred hhhHHHHHHhh----CCCCCCCCE--EEECCCCchHHHH
Q 010111 53 PVQVAVWQETI----GPGLFERDL--CINSPTGSGKTLS 85 (518)
Q Consensus 53 ~~Q~~a~~~~~----~~~~~~~~~--li~apTGsGKT~~ 85 (518)
.-|.+.+..+. ..++.|.|+ +..|+||||||.+
T Consensus 56 ~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 94 (349)
T 1t5c_A 56 ETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYT 94 (349)
T ss_dssp SCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeE
Confidence 34555554332 233457664 5699999999997
No 488
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=47.94 E-value=7.1 Score=37.07 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=14.7
Q ss_pred CCCCE--EEECCCCchHHHH
Q 010111 68 FERDL--CINSPTGSGKTLS 85 (518)
Q Consensus 68 ~~~~~--li~apTGsGKT~~ 85 (518)
.|.|+ +..|+||||||.+
T Consensus 77 ~G~n~tifAYGqTGSGKTyT 96 (369)
T 3cob_A 77 DGYNVCIFAYGQTGSGKTFT 96 (369)
T ss_dssp TTCEEEEEEEECTTSSHHHH
T ss_pred cCCceEEEEECCCCCCCeEe
Confidence 57664 5689999999997
No 489
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=47.66 E-value=7.2 Score=36.91 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=21.7
Q ss_pred hhhHHHHHHh----hCCCCCCCCE--EEECCCCchHHHH
Q 010111 53 PVQVAVWQET----IGPGLFERDL--CINSPTGSGKTLS 85 (518)
Q Consensus 53 ~~Q~~a~~~~----~~~~~~~~~~--li~apTGsGKT~~ 85 (518)
.-|.+.+..+ +..++.|.|+ +..|+||||||.+
T Consensus 67 ~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 67 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred CchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceE
Confidence 4466655443 2233457664 5699999999997
No 490
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=47.63 E-value=8 Score=36.92 Aligned_cols=34 Identities=24% Similarity=0.188 Sum_probs=22.0
Q ss_pred hhhHHHHHHh----hCCCCCCCC--EEEECCCCchHHHHh
Q 010111 53 PVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (518)
Q Consensus 53 ~~Q~~a~~~~----~~~~~~~~~--~li~apTGsGKT~~~ 86 (518)
.-|.+.+..+ +..++.|.| ++..|+||||||.+.
T Consensus 113 ~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 113 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp CCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred CCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 4466655432 223345765 466999999999983
No 491
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=47.62 E-value=8.2 Score=34.92 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=21.3
Q ss_pred CCcccEEEEechhHhhhHhHHhHHHHHHHhc
Q 010111 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (518)
Q Consensus 195 ~~~~~~vViDEah~~~~~~~~~~~~~i~~~~ 225 (518)
+.+.+++++||.-.-+|......+..++..+
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 202 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYES 202 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHC
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 3456788888888777777766666666544
No 492
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=47.59 E-value=8.2 Score=34.57 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=21.4
Q ss_pred CCcccEEEEechhHhhhHhHHhHHHHHHHhc
Q 010111 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (518)
Q Consensus 195 ~~~~~~vViDEah~~~~~~~~~~~~~i~~~~ 225 (518)
..+.+++++||--.-+|......+..++..+
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l 192 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQA 192 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 3456788888888777777766666665544
No 493
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=47.57 E-value=17 Score=33.17 Aligned_cols=20 Identities=30% Similarity=0.184 Sum_probs=15.3
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 010111 68 FERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (518)
.++-+.+.+++|+|||..+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~ 116 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAA 116 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35567788999999997544
No 494
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=47.49 E-value=9.6 Score=40.35 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=17.3
Q ss_pred CCCCEEEECCCCchHHHHhHH
Q 010111 68 FERDLCINSPTGSGKTLSYAL 88 (518)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~l 88 (518)
.+.++++.||+|+|||..+-.
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~ 226 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEG 226 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHH
Confidence 457899999999999986443
No 495
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=47.44 E-value=8.1 Score=36.77 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=21.5
Q ss_pred hhhHHHHHHh----hCCCCCCCC--EEEECCCCchHHHH
Q 010111 53 PVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLS 85 (518)
Q Consensus 53 ~~Q~~a~~~~----~~~~~~~~~--~li~apTGsGKT~~ 85 (518)
.-|.+.+..+ +..++.|.| ++..++||||||.+
T Consensus 79 ~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 79 SKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCccee
Confidence 3466655443 223345766 46699999999997
No 496
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=47.26 E-value=8.1 Score=35.39 Aligned_cols=17 Identities=24% Similarity=0.084 Sum_probs=14.1
Q ss_pred CEEEECCCCchHHHHhH
Q 010111 71 DLCINSPTGSGKTLSYA 87 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (518)
-+++.|++|||||..+-
T Consensus 4 ~I~l~G~~GsGKST~a~ 20 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAR 20 (301)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 497
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=47.15 E-value=9.8 Score=32.42 Aligned_cols=19 Identities=32% Similarity=0.190 Sum_probs=15.0
Q ss_pred CCCEEEECCCCchHHHHhH
Q 010111 69 ERDLCINSPTGSGKTLSYA 87 (518)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (518)
+.-+.+.|+.|||||..+-
T Consensus 22 ~~~i~i~G~~GsGKstl~~ 40 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLAN 40 (201)
T ss_dssp SEEEEEEECTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4557889999999997533
No 498
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=47.09 E-value=8.3 Score=37.24 Aligned_cols=19 Identities=37% Similarity=0.426 Sum_probs=15.2
Q ss_pred CCCCCE--EEECCCCchHHHH
Q 010111 67 LFERDL--CINSPTGSGKTLS 85 (518)
Q Consensus 67 ~~~~~~--li~apTGsGKT~~ 85 (518)
+.|.|+ +..|+||||||.+
T Consensus 135 l~G~n~tifAYGqTGSGKTyT 155 (412)
T 3u06_A 135 LDGYNICIFAYGQTGSGKTYT 155 (412)
T ss_dssp HTTCCEEEEEESSTTSSHHHH
T ss_pred HCCCceEEEEecCCCCCCeeE
Confidence 357664 5689999999998
No 499
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=46.73 E-value=8.6 Score=34.22 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=14.1
Q ss_pred CEEEECCCCchHHHHhH
Q 010111 71 DLCINSPTGSGKTLSYA 87 (518)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (518)
.+.|.|+.|||||.++-
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47789999999998643
No 500
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=46.72 E-value=11 Score=34.00 Aligned_cols=19 Identities=32% Similarity=0.293 Sum_probs=16.3
Q ss_pred CCCCCEEEECCCCchHHHH
Q 010111 67 LFERDLCINSPTGSGKTLS 85 (518)
Q Consensus 67 ~~~~~~li~apTGsGKT~~ 85 (518)
..|.-+.+.+|.|+|||..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3578889999999999974
Done!