Query 010112
Match_columns 518
No_of_seqs 418 out of 1412
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 20:09:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010112.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010112hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 3.2E-46 1.1E-50 374.4 30.0 451 17-516 6-476 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 1.6E-38 5.5E-43 314.9 23.1 400 18-503 23-433 (451)
3 3o7q_A L-fucose-proton symport 100.0 3.3E-36 1.1E-40 297.1 30.3 395 19-502 22-431 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 9.6E-33 3.3E-37 276.4 25.3 390 64-508 50-477 (491)
5 2gfp_A EMRD, multidrug resista 100.0 1.8E-32 6.1E-37 264.5 10.0 346 26-465 3-351 (375)
6 2xut_A Proton/peptide symporte 100.0 2.4E-28 8.4E-33 246.5 22.3 142 65-235 51-197 (524)
7 2cfq_A Lactose permease; trans 100.0 3.2E-28 1.1E-32 237.7 16.4 362 64-510 39-407 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 1.8E-12 6E-17 127.7 16.8 171 28-235 257-432 (451)
9 3o7q_A L-fucose-proton symport 99.4 1.5E-12 5.1E-17 127.7 16.2 192 297-508 27-236 (438)
10 2cfq_A Lactose permease; trans 99.4 2.6E-12 8.7E-17 125.0 13.1 145 67-240 258-404 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.4 3E-12 1E-16 127.6 12.7 172 297-501 14-194 (491)
12 2gfp_A EMRD, multidrug resista 99.3 1.5E-12 5.2E-17 124.8 8.9 173 304-509 8-181 (375)
13 4gc0_A D-xylose-proton symport 99.3 2.9E-11 9.8E-16 120.4 13.7 182 32-241 286-468 (491)
14 2xut_A Proton/peptide symporte 99.3 4.6E-11 1.6E-15 120.0 15.2 170 301-502 17-197 (524)
15 2g9p_A Antimicrobial peptide l 58.2 3.6 0.00012 19.8 0.8 14 87-100 2-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=3.2e-46 Score=374.40 Aligned_cols=451 Identities=20% Similarity=0.264 Sum_probs=326.8
Q ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 010112 17 TQLYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGAKKPGTLPPNVSAAVNGVALCGTLAGQLFFGWLGDKLG 96 (518)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~G~l~dr~G 96 (518)
.+++.+.+.++.+++.++.++|...++..+|.+.+++... .+.+.+.+..+.|++.+++.+|..+|++++|+++||+|
T Consensus 6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~G 83 (491)
T 4gc0_A 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAP--QNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFG 83 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGG--GCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTC
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456677777778899999999999999999998887221 11122345668899999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhh------------------ccCCchhhHHHHHHHHHHHhhhccccccchhhHHhhhhccc
Q 010112 97 RKKVYGITLILMVISSIASGL------------------SFGKSAKGVIATLCFFRFWLGFGIGGDYPLSATIMSEYANK 158 (518)
Q Consensus 97 rr~~~~~~~~l~~i~~~~~~~------------------~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~ 158 (518)
||+++.++.+++.++++++++ +++ +++++++|+++|++.|+..+....+++|+.|+
T Consensus 84 Rk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~------~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~ 157 (491)
T 4gc0_A 84 RRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGY------VPEFVIYRIIGGIGVGLASMLSPMYIAELAPA 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGC------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence 999999999999999999985 556 89999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCcchHHHHhhhHHHHHHHHHHhcCCC
Q 010112 159 KTRGAFIAAVFAMQGFGILAGGIVALIVSSAFDHHFKAPPYSVDPVGSTAPEADYVWRIVLMVGALPAALTYYWRMRMPE 238 (518)
Q Consensus 159 ~~rg~~~~~~~~~~~lG~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 238 (518)
++|++..++.+.+..+|.++++.++..+....+.. ....+.||+.+.+.+++.++.++..+++||
T Consensus 158 ~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 222 (491)
T 4gc0_A 158 HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDAS---------------WLNTDGWRYMFASECIPALLFLMLLYTVPE 222 (491)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT---------------TTTTTHHHHHHHTTHHHHHHHHHHGGGSCC
T ss_pred HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccc---------------cccchhhHHHhhhhhhhhhhhhhhhhcCCC
Confidence 99999999999999999999999988876443310 123456999999988888888888888999
Q ss_pred CcchhhhhhccHHHHHHHHHHHHhhhcchhhhH-hhhhhhccCCcccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHh
Q 010112 239 TARYTALVAKNAKQAAADMSKVLQVELEAEEDK-VAKLSQRDSNSFGLFSREFLKRHGLHLFGTTSTWFLLDIAFYSQNL 317 (518)
Q Consensus 239 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (518)
||+|+ ..+++.+++.+.+++....+..+++.. .++...+.++.. ......+..+.........+......+....
T Consensus 223 Sp~~L-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (491)
T 4gc0_A 223 SPRWL-MSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTG---GRLLMFGVGVIVIGVMLSIFQQFVGINVVLY 298 (491)
T ss_dssp CHHHH-HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---THHHHSCCTHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ChHHH-HHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhh---hHHHHhcccHHHHHHHHHHHHHHhhhhHHHh
Confidence 99997 444555666665555544332222111 111111100000 0111111112233333333333444555666
Q ss_pred hHHHHHHHhcCCCCCcchhhhHHHHHHHHHHHHHHHhhcccchhhhhhhhhhccChhHHHHHHHHHHHHHHHHhhccccc
Q 010112 318 FQKDIFSAIGWIPPAATMNAIHEVYKIARAQTLIALCSTVPGYWFTVAFIDYMGRFAIQMMGFFFMTVFMFALAIPYHHW 397 (518)
Q Consensus 318 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 397 (518)
+.+.+.+..+.+... .........+..+++.++++++.||+|||+.++.+.....++++.+......
T Consensus 299 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~- 365 (491)
T 4gc0_A 299 YAPEVFKTLGASTDI------------ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT- 365 (491)
T ss_dssp HHHHHHHHSSCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred cchHHHHhcCCCccc------------hhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc-
Confidence 777777765543321 2224455566777888899999999999999999988888877766544321
Q ss_pred cCCCchhHHHHHHHHHHHHHhcCccceeeeccccccchhhhhhHHHHHHHHHHHHHHHHHhhhHhhhhcCCCCcCCCCCC
Q 010112 398 TLKPNRIGFVIMYSLTFFFANFGPNATTFVVPAEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSKDPTKRDAGYP 477 (518)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 477 (518)
.......+....+....+..+..++.+.+.+|++|++.|++++|+.+..+++++++++.+.+.+.+.... .
T Consensus 366 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~-------~ 436 (491)
T 4gc0_A 366 --QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL-------V 436 (491)
T ss_dssp --TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH-------H
T ss_pred --ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 1122333334444445556667788899999999999999999999999999999999998877531110 0
Q ss_pred CcccchhHHHHHHHHHHHHHHHHh-hcccCCCCChhhhcc
Q 010112 478 AGIGVKNSLIMLGVVNFVGMICTL-CVPESKGRSLEELSR 516 (518)
Q Consensus 478 ~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 516 (518)
...++...|++++++++++.++.+ ++||||+|++||+|+
T Consensus 437 ~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~ 476 (491)
T 4gc0_A 437 AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEA 476 (491)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGG
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHH
Confidence 123455678888999888888776 899999999999874
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=1.6e-38 Score=314.91 Aligned_cols=400 Identities=14% Similarity=0.119 Sum_probs=293.5
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHhhhhhhhhhhhhcch
Q 010112 18 QLYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGAKKPGTLPPNVSAAVNGVALCGTLAGQLFFGWLGDKLGR 97 (518)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~G~l~dr~Gr 97 (518)
++.+++.+..++++.+..+++...+++..|.+.+++ .+..+.|++.+++.++..++++++|+++||+||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~ 91 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-----------FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNP 91 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-----------TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCc
Confidence 455677788888889999999999999999887665 577889999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhh----ccCCchhhHHHHHHHHHHHhhhccccccchhhHHhhhhcccccchhHHHHHHHHHH
Q 010112 98 KKVYGITLILMVISSIASGL----SFGKSAKGVIATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQG 173 (518)
Q Consensus 98 r~~~~~~~~l~~i~~~~~~~----~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~ 173 (518)
|+++..+.++.+++.+++++ +++ ++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..
T Consensus 92 r~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 165 (451)
T 1pw4_A 92 RVFLPAGLILAAAVMLFMGFVPWATSS------IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHN 165 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHSS------SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhcccc------HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHH
Confidence 99999999999999999999 888 68999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCc-chHHHHhhhHHHHHHHH-HHhcCCCCcchhhhhhccHH
Q 010112 174 FGILAGGIVALIVSSAFDHHFKAPPYSVDPVGSTAPEADYV-WRIVLMVGALPAALTYY-WRMRMPETARYTALVAKNAK 251 (518)
Q Consensus 174 lG~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-wr~~f~~~~~~~~~~~~-~~~~~~esp~~~~~~~~~~~ 251 (518)
+|.++++.+++.+.+. .+ ||+.|++.++++++..+ ..+++||+|++....+.++.
T Consensus 166 ~g~~~g~~~~~~l~~~-----------------------~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (451)
T 1pw4_A 166 VGGGIPPLLFLLGMAW-----------------------FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY 222 (451)
T ss_dssp HHHTSHHHHHHHHHHH-----------------------TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT
T ss_pred HHHHHHHHHHHHHHHH-----------------------hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh
Confidence 9999999999987643 33 99999998887766544 45678888765211111100
Q ss_pred HHHHHHHHHHhhhcchhhhHhhhhhhccCCcccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHhhHHHHHHH-hcCCC
Q 010112 252 QAAADMSKVLQVELEAEEDKVAKLSQRDSNSFGLFSREFLKRHGLHLFGTTSTWFLLDIAFYSQNLFQKDIFSA-IGWIP 330 (518)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~ 330 (518)
+.. ..++.++.++++.+.++.......++ +.++...+..++....++....+.|.++++ .|+++
T Consensus 223 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 287 (451)
T 1pw4_A 223 KND-------------YPDDYNEKAEQELTAKQIFMQYVLPN--KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFAL 287 (451)
T ss_dssp CCC--------------------------CCTHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCH
T ss_pred ccc-------------ccccchhhhhcccccccchHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 000 00000000001111111111111111 234445555556666677777888888776 55544
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHhhcccchhhhhhhhhhc--cChhHHHHHHHHHH-HHHHHHhhccccccCCCchhHHH
Q 010112 331 PAATMNAIHEVYKIARAQTLIALCSTVPGYWFTVAFIDYM--GRFAIQMMGFFFMT-VFMFALAIPYHHWTLKPNRIGFV 407 (518)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 407 (518)
.+ .........++.+++.++.+++.||+ +||+.+..+..+.. ++.+++.... ..+.+...
T Consensus 288 ~~------------~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 350 (451)
T 1pw4_A 288 DK------------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP-----AGNPTVDM 350 (451)
T ss_dssp HH------------HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCC-----TTCHHHHH
T ss_pred HH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhc-----ccCHHHHH
Confidence 32 22356666778888999999999999 99998887776665 5555544332 11222222
Q ss_pred HHHHHHHHHHhcCccceeeeccccccchhhhhhHHHHHHHHHHH-HHHHHHhhhHhhhhcCCCCcCCCCCCCcccchhHH
Q 010112 408 IMYSLTFFFANFGPNATTFVVPAEIFPARLRSTCHGISAAAGKA-GAIVGAFGFLYAAQSKDPTKRDAGYPAGIGVKNSL 486 (518)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~~~~~~~~~~~~~~g~~~~~ 486 (518)
... +..+.......+....+..|.+|++.|+++.|+.+...++ |..++|.+.|.+.+ ..|+...|
T Consensus 351 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~-------------~~g~~~~~ 416 (451)
T 1pw4_A 351 ICM-IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD-------------FFGWDGGF 416 (451)
T ss_dssp HHH-HHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------SSCSHHHH
T ss_pred HHH-HHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hcCcHHHH
Confidence 222 2333333334556668889999999999999999999999 99999999999984 55788899
Q ss_pred HHHHHHHHHHHHHHhhc
Q 010112 487 IMLGVVNFVGMICTLCV 503 (518)
Q Consensus 487 ~~~~~~~~~~~~~~~~~ 503 (518)
++.+++.+++.++.++.
T Consensus 417 ~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 417 MVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99988888887777644
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=3.3e-36 Score=297.13 Aligned_cols=395 Identities=11% Similarity=-0.000 Sum_probs=280.5
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHhhhhhhhhhhhhcchh
Q 010112 19 LYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGAKKPGTLPPNVSAAVNGVALCGTLAGQLFFGWLGDKLGRK 98 (518)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~G~l~dr~Grr 98 (518)
++++..+..+++..+..+++....++..|.+.+++ +++..+.|++.+.+.+++.+++++.|+++||+|||
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r 91 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAF----------TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK 91 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----------CCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch
Confidence 34455666777788889999999999999999999 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHh---hhccCCchhhHHHHHHHHHHHhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHHH
Q 010112 99 KVYGITLILMVISSIAS---GLSFGKSAKGVIATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFG 175 (518)
Q Consensus 99 ~~~~~~~~l~~i~~~~~---~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG 175 (518)
++++.+.++.+++.+++ +++++ ++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 165 (438)
T 3o7q_A 92 AGIITGLFLYALGAALFWPAAEIMN------YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFG 165 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccc------HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHH
Confidence 99999999999999999 88888 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hhcccCCCCCCCCCCCCCCCCCCCC------CcchHHHHhhhHHHHHHHHHHhc--CCCCcchhhhh
Q 010112 176 ILAGGIVALIVS-SAFDHHFKAPPYSVDPVGSTAPEAD------YVWRIVLMVGALPAALTYYWRMR--MPETARYTALV 246 (518)
Q Consensus 176 ~~lg~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~wr~~f~~~~~~~~~~~~~~~~--~~esp~~~~~~ 246 (518)
.++++.+++.+. +..+...+...... +...... .+||+.|++.+++.++..+..++ .||+++.. +
T Consensus 166 ~~~g~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~ 239 (438)
T 3o7q_A 166 AIIAVVFGQSLILSNVPHQSQDVLDKM----SPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN--H 239 (438)
T ss_dssp HHHHHHHTTHHHHTSSCCCCHHHHHHS----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC--C
T ss_pred HHHHHHHHHHHHhcccccccccccccC----CcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc--c
Confidence 999999999887 32210000000000 0000000 11999998877666554443333 45554321 0
Q ss_pred hccHHHHHHHHHHHHhhhcchhhhHhhhhhhccCCcccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHhhHHHH-HHH
Q 010112 247 AKNAKQAAADMSKVLQVELEAEEDKVAKLSQRDSNSFGLFSREFLKRHGLHLFGTTSTWFLLDIAFYSQNLFQKDI-FSA 325 (518)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 325 (518)
+++++ . +...+.++.++++ .++......++..........+.|.+ +++
T Consensus 240 ~~~~~-----------------~-------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (438)
T 3o7q_A 240 SDAKQ-----------------G-------SFSASLSRLARIR-------HWRWAVLAQFCYVGAQTACWSYLIRYAVEE 288 (438)
T ss_dssp CCSST-----------------T-------SHHHHHHHHTTCS-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccc-----------------c-------chhhhHHHHHhCh-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 00000 0 0000111122222 22334444445555666677788888 776
Q ss_pred h-cCCCCCcchhhhHHHHHHHHHHHHHHHhhcccchhhhhhhhhhccChhHHHHHHHHHHHHHHHHhhccccccCCCchh
Q 010112 326 I-GWIPPAATMNAIHEVYKIARAQTLIALCSTVPGYWFTVAFIDYMGRFAIQMMGFFFMTVFMFALAIPYHHWTLKPNRI 404 (518)
Q Consensus 326 ~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (518)
. |+++.+ .........++.+++.++.+++.||++||+.+..+.++..++.+++.... +..
T Consensus 289 ~~g~~~~~------------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 349 (438)
T 3o7q_A 289 IPGMTAGF------------AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG-------GHV 349 (438)
T ss_dssp STTCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC-------HHH
T ss_pred cCCcchhH------------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC-------CcH
Confidence 4 655443 22355666777888999999999999999999998888877777666544 222
Q ss_pred HHHHHHHHHHHHHhcCccceeeeccccccchhhhhhHHHHHHHHHHHHHHHHHhhhHhhhhcCCCCcCCCCCCCccc-ch
Q 010112 405 GFVIMYSLTFFFANFGPNATTFVVPAEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSKDPTKRDAGYPAGIG-VK 483 (518)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~g-~~ 483 (518)
......+.+ ++.....+..+++..|.+|++ ++.+.++.. .+.+|+.++|.+.|.+.+ ..| ++
T Consensus 350 -~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~-------------~~g~~~ 412 (438)
T 3o7q_A 350 -GLIALTLCS-AFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD-------------AAGNIP 412 (438)
T ss_dssp -HHHHHHHHH-HHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH-------------HHTSSG
T ss_pred -HHHHHHHHH-HHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH-------------HhcchH
Confidence 222233333 333345677888888998877 888888877 678999999999999985 345 77
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q 010112 484 NSLIMLGVVNFVGMICTLC 502 (518)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~ 502 (518)
..|.+.+++.++..++.+.
T Consensus 413 ~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 413 TAELIPALCFAVIFIFARF 431 (438)
T ss_dssp GGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7787766665555444333
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=9.6e-33 Score=276.44 Aligned_cols=390 Identities=10% Similarity=0.000 Sum_probs=246.3
Q ss_pred CCCchhhHHHHHHHHHHHHhhhhhhhhhhhh-cchhhHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHhhhccc
Q 010112 64 TLPPNVSAAVNGVALCGTLAGQLFFGWLGDK-LGRKKVYGITLILMVISSIASGLSFGKSAKGVIATLCFFRFWLGFGIG 142 (518)
Q Consensus 64 ~~s~~~~g~~~s~~~lg~~i~~~~~G~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 142 (518)
|.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.++++++++ ++.++++|+++|++.+
T Consensus 50 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~~~ 123 (491)
T 4aps_A 50 HITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFG------ASALFGSIILIIIGTG 123 (491)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCS------TTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 89999999999999999999999998 6999999999999999
Q ss_pred cccchhhHHhhhhccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCcchHHHH
Q 010112 143 GDYPLSATIMSEYANKKT--RGAFIAAVFAMQGFGILAGGIVALIVSSAFDHHFKAPPYSVDPVGSTAPEADYVWRIVLM 220 (518)
Q Consensus 143 ~~~~~~~~~i~e~~~~~~--rg~~~~~~~~~~~lG~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~ 220 (518)
...+...+++.|++|+++ |++++++++.+.++|..++|.+++.+.+..+ ||+.|+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-----------------------~~~~f~ 180 (491)
T 4aps_A 124 FLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG-----------------------YHVAFS 180 (491)
T ss_dssp HHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-----------------------HHHHHH
T ss_pred hccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh-----------------------HHHHHH
Confidence 999999999999999988 7778888999999999999999999975444 999999
Q ss_pred hhhHHHHHHHHHHhc-CCCCcc---hhhhhhccHHHHHHHHHH---------------HHhhhcchhhhHhh-hh-----
Q 010112 221 VGALPAALTYYWRMR-MPETAR---YTALVAKNAKQAAADMSK---------------VLQVELEAEEDKVA-KL----- 275 (518)
Q Consensus 221 ~~~~~~~~~~~~~~~-~~esp~---~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~-~~----- 275 (518)
+.++..++..+...+ .|+..+ ..+..+.++++.++..+. ....+.+.+..... ..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (491)
T 4aps_A 181 LAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAI 260 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHH
Confidence 987766655444322 121110 000111122222221111 00000000000000 00
Q ss_pred --hhccCCcccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHhhHHHHHHH-hcCCCCCcchhhhHHHHHHHHHHHHHH
Q 010112 276 --SQRDSNSFGLFSREFLKRHGLHLFGTTSTWFLLDIAFYSQNLFQKDIFSA-IGWIPPAATMNAIHEVYKIARAQTLIA 352 (518)
Q Consensus 276 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (518)
........+....+..++.....+......+.....+.....+.+.+..+ .+.+....+. .....
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 328 (491)
T 4aps_A 261 PVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSW------------FQSLN 328 (491)
T ss_dssp HHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGG------------GTTHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHH------------Hhccc
Confidence 00000000000001111111122233333333344555556666777665 3444333222 34444
Q ss_pred HhhcccchhhhhhhhhhccChhHHH-----HHHHHHHHHHHHHhhcccccc-CCCchhHHHHHHHHHHHHHhcCccceee
Q 010112 353 LCSTVPGYWFTVAFIDYMGRFAIQM-----MGFFFMTVFMFALAIPYHHWT-LKPNRIGFVIMYSLTFFFANFGPNATTF 426 (518)
Q Consensus 353 ~~~~~~~~~~~g~l~dr~g~r~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (518)
.+..+++.++.+++.||++||+... .+..+.+++.+++........ .............+..+.+.....+..+
T Consensus 329 ~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 408 (491)
T 4aps_A 329 PLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGL 408 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5555666778899999999987654 565666655555444321100 0111222333333333444444567778
Q ss_pred eccccccchhhhhhHHHHHHHHHHHHHHHHHhhhHhhhhcCCCCcCCCCCCCcccchhHHHHHHHHHHHHHHHHh-hccc
Q 010112 427 VVPAEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSKDPTKRDAGYPAGIGVKNSLIMLGVVNFVGMICTL-CVPE 505 (518)
Q Consensus 427 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 505 (518)
.++.|.+|++.|+++.|+.+...++|..++|.+.+.+.+ .++...|.+++++++++.+..+ +.++
T Consensus 409 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 409 SVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA--------------KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG--------------SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999998863 2566778888888877777666 4444
Q ss_pred CCC
Q 010112 506 SKG 508 (518)
Q Consensus 506 ~~~ 508 (518)
.++
T Consensus 475 ~~~ 477 (491)
T 4aps_A 475 IQG 477 (491)
T ss_dssp ---
T ss_pred HHH
Confidence 443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.97 E-value=1.8e-32 Score=264.52 Aligned_cols=346 Identities=13% Similarity=0.075 Sum_probs=245.9
Q ss_pred HHHHHHHhhhhhhhHHHHHHHhhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHhhhhhhhhhhhhcchhhHHHHHH
Q 010112 26 VIAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGAKKPGTLPPNVSAAVNGVALCGTLAGQLFFGWLGDKLGRKKVYGITL 105 (518)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~G~l~dr~Grr~~~~~~~ 105 (518)
..+++..+..+++...+.+..|.+.+++ +.+..+.+++.+.+.++..+++++.|+++||+|||+++..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 72 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDL----------NVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGM 72 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS----------SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 4456677788888899999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCchhhHHHHHHHHHHHhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 010112 106 ILMVISSIASGLSFGKSAKGVIATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGIVALI 185 (518)
Q Consensus 106 ~l~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~lg~~l~~~ 185 (518)
++.+++.++.+++++ ++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++++
T Consensus 73 ~~~~~~~~~~~~~~~------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 146 (375)
T 2gfp_A 73 SIFMLATLVAVTTSS------LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGL 146 (375)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999988 79999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhcccCCCCCCCCCCCCCCCCCCCCCcchHHHHhhhHHHHHHHH-HHhcCCCCcchhhhhhccHHHHHHHHHHHHhhh
Q 010112 186 VSSAFDHHFKAPPYSVDPVGSTAPEADYVWRIVLMVGALPAALTYY-WRMRMPETARYTALVAKNAKQAAADMSKVLQVE 264 (518)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~ 264 (518)
+.+.. +||+.|++.++..++..+ ..+++||++++. +++
T Consensus 147 l~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------------- 185 (375)
T 2gfp_A 147 LDTMW-----------------------NWRACYLFLLVLCAGVTFSMARWMPETRPVD--APR---------------- 185 (375)
T ss_dssp SSCHH-----------------------HHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT--CCC----------------
T ss_pred HHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHCcccCCCC--ccc----------------
Confidence 86443 499999988887766655 345678776531 100
Q ss_pred cchhhhHhhhhhhccCCcccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHhhHHHHHHH-hcCCCCCcchhhhHHHHH
Q 010112 265 LEAEEDKVAKLSQRDSNSFGLFSREFLKRHGLHLFGTTSTWFLLDIAFYSQNLFQKDIFSA-IGWIPPAATMNAIHEVYK 343 (518)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~ 343 (518)
++..++.++.++++. ++......+...........+.|.++++ .|+++ .
T Consensus 186 -----------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------------~ 235 (375)
T 2gfp_A 186 -----------TRLLTSYKTLFGNSG-------FNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSS------------M 235 (375)
T ss_dssp -----------CCTTTCSTHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHH------------H
T ss_pred -----------ccHHHHHHHHhcCcc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH------------H
Confidence 000112222333322 2223333333334444444444444433 23221 1
Q ss_pred HHHHHHHHHHhhcccchhhhhhhhhhccChhHHHHHHHH-HHHHHHHHhhccccccCCCchhHHHHHHHHHHHHHhcCcc
Q 010112 344 IARAQTLIALCSTVPGYWFTVAFIDYMGRFAIQMMGFFF-MTVFMFALAIPYHHWTLKPNRIGFVIMYSLTFFFANFGPN 422 (518)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (518)
..........++.+++.++.+++.||.+++. ..+... ...+..++..... ...+.+.......+.+.. .....
T Consensus 236 ~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~g~~-~~~~~ 309 (375)
T 2gfp_A 236 TVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWF---GVMNVWTLLVPAALFFFG-AGMLF 309 (375)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHH---HHHHHHHHHHHHHHHHHH-HHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhh---ccccHHHHHHHHHHHHHH-HHHhh
Confidence 2333555666777888888899999988722 222222 1111111111000 000112222223333333 33346
Q ss_pred ceeeeccccccchhhhhhHHHHHHHHHHHHHHHHHhhhHhhhh
Q 010112 423 ATTFVVPAEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQ 465 (518)
Q Consensus 423 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 465 (518)
+....+..|..| ++|+++.|+.+...++|..++|.+.+.+.+
T Consensus 310 ~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 351 (375)
T 2gfp_A 310 PLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ 351 (375)
T ss_dssp STTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH
T ss_pred HHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677788899988 889999999999999999999999999873
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=2.4e-28 Score=246.47 Aligned_cols=142 Identities=13% Similarity=0.191 Sum_probs=128.3
Q ss_pred CCchhhHHHHHHHHHHHHhhhhhhhhhhhhc-chhhHHHHHHHHHHHHHHHhhhcc-CCchhhHHHHHHHHHHHhhhccc
Q 010112 65 LPPNVSAAVNGVALCGTLAGQLFFGWLGDKL-GRKKVYGITLILMVISSIASGLSF-GKSAKGVIATLCFFRFWLGFGIG 142 (518)
Q Consensus 65 ~s~~~~g~~~s~~~lg~~i~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~g 142 (518)
++..+.+++.+.+.++..+++++.|+++||+ |||+++..+.++.+++.+++++++ + ++.++++|++.|++.+
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~~~ 124 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHS------VQGFYTGLFLIALGSG 124 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSC------HHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccc------HHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999 999999999999999999999998 7 7999999999999999
Q ss_pred cccchhhHHhhhhcccccchhHHHH---HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCcchHHH
Q 010112 143 GDYPLSATIMSEYANKKTRGAFIAA---VFAMQGFGILAGGIVALIVSSAFDHHFKAPPYSVDPVGSTAPEADYVWRIVL 219 (518)
Q Consensus 143 ~~~~~~~~~i~e~~~~~~rg~~~~~---~~~~~~lG~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f 219 (518)
...+...+++.|++|+++|+++.+. .+.+.++|.+++|.+++.+.+. .+||+.|
T Consensus 125 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-----------------------~g~~~~f 181 (524)
T 2xut_A 125 GIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN-----------------------FGAAVAF 181 (524)
T ss_dssp TTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT-----------------------SCHHHHH
T ss_pred ccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------------ccHHHHH
Confidence 9999999999999999999877666 8899999999999999988743 3499999
Q ss_pred HhhhHHHHHHHHHHhc
Q 010112 220 MVGALPAALTYYWRMR 235 (518)
Q Consensus 220 ~~~~~~~~~~~~~~~~ 235 (518)
++.++..++..+...+
T Consensus 182 ~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 182 GIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9988776665554433
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.95 E-value=3.2e-28 Score=237.74 Aligned_cols=362 Identities=14% Similarity=0.065 Sum_probs=220.2
Q ss_pred CCCchhhHHHHHHHHHHHHhhhhhhhhhhhhcchhhHHHHHHHHHHHHHH---HhhhccCCchhhHHHHHHHHHHHhhhc
Q 010112 64 TLPPNVSAAVNGVALCGTLAGQLFFGWLGDKLGRKKVYGITLILMVISSI---ASGLSFGKSAKGVIATLCFFRFWLGFG 140 (518)
Q Consensus 64 ~~s~~~~g~~~s~~~lg~~i~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~---~~~~~~~~~~~~~~~~l~~~r~l~G~~ 140 (518)
|++..+.|++.+.+.++..++++++|+++||+|||++++.+..+++++.. ...+.+.. ...+...+++.|++
T Consensus 39 g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 113 (417)
T 2cfq_A 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL-----QYNILVGSIVGGIY 113 (417)
T ss_dssp CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHH-----HTTCCHHHHGGGSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988887755322 11222210 01234566777776
Q ss_pred cccccchhhHHhhhhccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCcchHH
Q 010112 141 IGGDYPLSATIMSEYANK--KTRGAFIAAVFAMQGFGILAGGIVALIVSSAFDHHFKAPPYSVDPVGSTAPEADYVWRIV 218 (518)
Q Consensus 141 ~g~~~~~~~~~i~e~~~~--~~rg~~~~~~~~~~~lG~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~ 218 (518)
.+...+.....+.++.++ ++|+...+....+..+|..++|.+++++.+ .+||..
T Consensus 114 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~------------------------~~~~~~ 169 (417)
T 2cfq_A 114 LGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT------------------------INNQFV 169 (417)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH------------------------HCSHHH
T ss_pred HHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH------------------------hchhHH
Confidence 665555555555555543 356777788877788899999999998863 239999
Q ss_pred HHhhhHHHHHHHHHHhcCCCCcchhhhhhccHHHHHHHHHHHHhhhcchhhhHhhhhhhccCCcccchhhhhhhhhhhHH
Q 010112 219 LMVGALPAALTYYWRMRMPETARYTALVAKNAKQAAADMSKVLQVELEAEEDKVAKLSQRDSNSFGLFSREFLKRHGLHL 298 (518)
Q Consensus 219 f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (518)
|++.++..++..+..++.+|+++.. .+++++ +++ ++.+...++.++.++++. .
T Consensus 170 f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------------~~~----~~~~~~~~~~~~~~~~~~-------~ 222 (417)
T 2cfq_A 170 FWLGSGCALILAVLLFFAKTDAPSS-ATVANA---------------VGA----NHSAFSLKLALELFRQPK-------L 222 (417)
T ss_dssp HTTTTTTTTTHHHHSCSSCCCCSCS-SCSSSS---------------SSS----CCCCCCHHHHHHHTTCHH-------H
T ss_pred HHHHHHHHHHHHHHHHHcCcccccc-cccccc---------------ccc----ccccccHHHHHHHhcCCc-------h
Confidence 9987776555544444444433210 000000 000 000000000111222221 1
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHhcCCCCCcchhhhHHHHHHHHHHHHHHHhhcccchhhhhhhhhhccChhHHHH
Q 010112 299 FGTTSTWFLLDIAFYSQNLFQKDIFSAIGWIPPAATMNAIHEVYKIARAQTLIALCSTVPGYWFTVAFIDYMGRFAIQMM 378 (518)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 378 (518)
+......+.....++....+.|.++.+. +... + .... ..........++.+++.++.+++.||+|||+.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~----~~~~-~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~ 294 (417)
T 2cfq_A 223 WFLSLYVIGVSCTYDVFDQQFANFFTSF-FATG--E----QGTR-VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLL 294 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSSH--H----HHTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc--C----CChh-HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHH
Confidence 1122222222223333334456665442 1110 0 0011 11224445556677788899999999999999888
Q ss_pred HHHHHHHHHHHHhhccccccCCCchhHHHHHHHHHHHHHhcCccceeeeccccccchhhhhhHHHHH-HHHHHHHHHHHH
Q 010112 379 GFFFMTVFMFALAIPYHHWTLKPNRIGFVIMYSLTFFFANFGPNATTFVVPAEIFPARLRSTCHGIS-AAAGKAGAIVGA 457 (518)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~ 457 (518)
+..+.+++.+++.... +....+....+..... ....+..+.+.+|.+|++.|+++.++. +...++|++++|
T Consensus 295 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp 366 (417)
T 2cfq_A 295 AGTIMSVRIIGSSFAT-------SALEVVILKTLHMFEV-PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMS 366 (417)
T ss_dssp HHHHHHHHHHHHTTCC-------SHHHHHHHTTHHHHHH-HHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc-------cHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 8877777665554332 2222222222222111 112234467889999999999999994 788889999999
Q ss_pred hhhHhhhhcCCCCcCCCCCCCcccchhHHHHHHHHHHHHHHHHh-hcccCCCCC
Q 010112 458 FGFLYAAQSKDPTKRDAGYPAGIGVKNSLIMLGVVNFVGMICTL-CVPESKGRS 510 (518)
Q Consensus 458 ~~~g~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 510 (518)
.+.|.+.+ ..|+...|.+.+++.+++.+..+ ..+|+++.+
T Consensus 367 ~l~G~l~~-------------~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 367 VLAGNMYE-------------SIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHTHHH-------------HSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred hhHHHHHH-------------hcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 99999984 45778888888888888887766 556555443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.44 E-value=1.8e-12 Score=127.72 Aligned_cols=171 Identities=18% Similarity=0.130 Sum_probs=137.8
Q ss_pred HHHHHhhhhhhhHHHHHHHhhhhhh-hcccCCCCCCCCCCchhhHHHHHHHHHHHHhhhhhhhhhhhhc--chhhHHHHH
Q 010112 28 AGMGFFTDAYDLFCISLVTKLLGRI-YYHVDGAKKPGTLPPNVSAAVNGVALCGTLAGQLFFGWLGDKL--GRKKVYGIT 104 (518)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~G~l~dr~--Grr~~~~~~ 104 (518)
..+..++............|.+.++ + +.+..+.+++.+...++..++.++.|++.||+ |||+.+..+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~ 326 (451)
T 1pw4_A 257 IAIANVFVYLLRYGILDWSPTYLKEVK----------HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVF 326 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHBTTBS----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 3344444444455555666665554 6 89999999999999999999999999999999 999998888
Q ss_pred HHHHH-HHHHHhhhccCCchhhHHHHHHHHHHHhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHH-HHHHHHHH
Q 010112 105 LILMV-ISSIASGLSFGKSAKGVIATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGF-GILAGGIV 182 (518)
Q Consensus 105 ~~l~~-i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~l-G~~lg~~l 182 (518)
..+.. ++.++..+.++. +.+.+.+..++.|++.+...+....++.|.+|+++|+++.++......+ |..+++.+
T Consensus 327 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~ 402 (451)
T 1pw4_A 327 FMTLVTIATIVYWMNPAG----NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAI 402 (451)
T ss_dssp HHHHHHHHHHHTTSCCTT----CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc----CHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 77776 777777666421 1677888889999988888888899999999999999999999999999 99999999
Q ss_pred HHHHHhhcccCCCCCCCCCCCCCCCCCCCCCcchHHHHhhhHHHHHHHHHHhc
Q 010112 183 ALIVSSAFDHHFKAPPYSVDPVGSTAPEADYVWRIVLMVGALPAALTYYWRMR 235 (518)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 235 (518)
.+.+.+..+ |+..|++.+++.++..+...+
T Consensus 403 ~g~l~~~~g-----------------------~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 403 VGYTVDFFG-----------------------WDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHSSC-----------------------SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-----------------------cHHHHHHHHHHHHHHHHHHHH
Confidence 999985443 999999888777766555433
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.44 E-value=1.5e-12 Score=127.68 Aligned_cols=192 Identities=9% Similarity=-0.022 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHhcCCCCCcchhhhHHHHHHHHHHHHHHHhhcccchhhhhhhhhhccChhHH
Q 010112 297 HLFGTTSTWFLLDIAFYSQNLFQKDIFSAIGWIPPAATMNAIHEVYKIARAQTLIALCSTVPGYWFTVAFIDYMGRFAIQ 376 (518)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 376 (518)
.++.....++.............|.+.++.|+++.+.+. ......++..++.++.|+++||+|||+.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~i~~~~~G~l~dr~g~r~~l 94 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGL------------IQSAFYFGYFIIPIPAGILMKKLSYKAGI 94 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHH------------HHHHHHHHHHTTHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHhHHHHHHHhcchHHH
Confidence 344455555555566666777788888888887765333 66677778888999999999999999999
Q ss_pred HHHHHHHHHHHHHH---hhccccccCCCchhHHHHHHHHHHHHHhcCccceeeeccccccchhhhhhHHHHHHHHHHHHH
Q 010112 377 MMGFFFMTVFMFAL---AIPYHHWTLKPNRIGFVIMYSLTFFFANFGPNATTFVVPAEIFPARLRSTCHGISAAAGKAGA 453 (518)
Q Consensus 377 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 453 (518)
..+.++.+++.++. .... +.+..++...+ .+.+.....+...+++.|.+|+++|+.++++.+....+|.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~l-~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 166 (438)
T 3o7q_A 95 ITGLFLYALGAALFWPAAEIM-------NYTLFLVGLFI-IAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGA 166 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHH-HHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccc-------cHHHHHHHHHH-HHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 99999998888877 3333 23333333333 3333333456777899999999999999999999999999
Q ss_pred HHHHhhhHhhh-hcCCCCc------CCCCC------CCcccchhHHHHHHHHHHHHHHHHhh--cccCCC
Q 010112 454 IVGAFGFLYAA-QSKDPTK------RDAGY------PAGIGVKNSLIMLGVVNFVGMICTLC--VPESKG 508 (518)
Q Consensus 454 ~~~~~~~g~l~-~~~~~~~------~~~~~------~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 508 (518)
.++|.+.+.+. +..+... .+... ....+|+..|.+.+++.++..+..++ .||+++
T Consensus 167 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 236 (438)
T 3o7q_A 167 IIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS 236 (438)
T ss_dssp HHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT
T ss_pred HHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 99999999988 3222000 00000 00001888887777776666555543 354433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.38 E-value=2.6e-12 Score=125.05 Aligned_cols=145 Identities=9% Similarity=0.027 Sum_probs=119.7
Q ss_pred chhhHHHHHHHHHHHHhhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHhhhccccccc
Q 010112 67 PNVSAAVNGVALCGTLAGQLFFGWLGDKLGRKKVYGITLILMVISSIASGLSFGKSAKGVIATLCFFRFWLGFGIGGDYP 146 (518)
Q Consensus 67 ~~~~g~~~s~~~lg~~i~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 146 (518)
....+++.+...++..++.++.|+++||+|||+++..+.++.+++.++.++.++ .+.+++..++.+++.+...+
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~ 331 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS------ALEVVILKTLHMFEVPFLLV 331 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCS------HHHHHHHTTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHH
Confidence 456688888888899999999999999999999999999988888888877776 57777888888887776667
Q ss_pred hhhHHhhhhcccccchhHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCcchHHHHhhhHH
Q 010112 147 LSATIMSEYANKKTRGAFIAA-VFAMQGFGILAGGIVALIVSSAFDHHFKAPPYSVDPVGSTAPEADYVWRIVLMVGALP 225 (518)
Q Consensus 147 ~~~~~i~e~~~~~~rg~~~~~-~~~~~~lG~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~ 225 (518)
....++.|.+|++.|+++.+. ++....+|..++|.+++.+.+..+ ++..|.+.+++
T Consensus 332 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-----------------------~~~~f~~~~~~ 388 (417)
T 2cfq_A 332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-----------------------FQGAYLVLGLV 388 (417)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-----------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-----------------------cHHHHHHHHHH
Confidence 778999999999999999998 477888999999999998875443 88888888877
Q ss_pred HHHHHHHH-hcCCCCc
Q 010112 226 AALTYYWR-MRMPETA 240 (518)
Q Consensus 226 ~~~~~~~~-~~~~esp 240 (518)
+++..+.. ...||.+
T Consensus 389 ~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 389 ALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHTTSSCCSC
T ss_pred HHHHHHHHHhhhcCCC
Confidence 77766554 3456543
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.36 E-value=3e-12 Score=127.58 Aligned_cols=172 Identities=12% Similarity=0.049 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHH------hcCCCCCcchhhhHHHHHHHHHHHHHHHhhcccchhhhhhhhhh-
Q 010112 297 HLFGTTSTWFLLDIAFYSQNLFQKDIFSA------IGWIPPAATMNAIHEVYKIARAQTLIALCSTVPGYWFTVAFIDY- 369 (518)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr- 369 (518)
..+......+.....++....+.+.++.+ .|+++.+ .........++..++.+++|+++||
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------------~~~~~~~~~~~~~~~~~~~g~l~dr~ 81 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRAT------------AASIMAIYASMVYLSGTIGGFVADRI 81 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34555556666667777776777777665 4555443 2235666777888899999999999
Q ss_pred ccChhHHHHHHHHHHHHHHHHhhccccccCCCchhHHHHHHHHHHHHHhcCccceeeeccccccchhh--hhhHHHHHHH
Q 010112 370 MGRFAIQMMGFFFMTVFMFALAIPYHHWTLKPNRIGFVIMYSLTFFFANFGPNATTFVVPAEIFPARL--RSTCHGISAA 447 (518)
Q Consensus 370 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~ 447 (518)
+|||+.+..+.++.+++.++..... +.....+...+. +.+.....+...+++.|.+|+++ |+.+.++.+.
T Consensus 82 ~g~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~-g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 153 (491)
T 4aps_A 82 IGARPAVFWGGVLIMLGHIVLALPF-------GASALFGSIILI-IIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVF 153 (491)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSCC-------STTHHHHHHHHH-HHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHH-HHHHHhccchHHHHHHHHcCcccccceeeehHHHH
Confidence 8999999999999988888777654 223333333333 33333345677789999999988 7888888999
Q ss_pred HHHHHHHHHHhhhHhhhhcCCCCcCCCCCCCcccchhHHHHHHHHHHHHHHHHh
Q 010112 448 AGKAGAIVGAFGFLYAAQSKDPTKRDAGYPAGIGVKNSLIMLGVVNFVGMICTL 501 (518)
Q Consensus 448 ~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 501 (518)
..++|..++|.+.+.+. +..||+..|.+.++..+++.+..+
T Consensus 154 ~~~~g~~~~~~~~~~l~-------------~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 154 GINLGAFIAPLIVGAAQ-------------EAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHHHHHHHHHH-------------HHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------------hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 456899999998887777766655
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.34 E-value=1.5e-12 Score=124.84 Aligned_cols=173 Identities=9% Similarity=-0.040 Sum_probs=126.4
Q ss_pred HHHHHHHHHHhHHhhHHHHHHHhcCCCCCcchhhhHHHHHHHHHHHHHHHhhcccchhhhhhhhhhccChhHHHHHHHHH
Q 010112 304 TWFLLDIAFYSQNLFQKDIFSAIGWIPPAATMNAIHEVYKIARAQTLIALCSTVPGYWFTVAFIDYMGRFAIQMMGFFFM 383 (518)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 383 (518)
..+.............|.+.++.|.++.+.+. ......++..++.++.|+++||+|||+.+..+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 75 (375)
T 2gfp_A 8 LVAVGQMAQTIYIPAIADMARDLNVREGAVQS------------VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIF 75 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHH------------HHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 33344444444555667777777776654322 566666777788999999999999999999999998
Q ss_pred HHHHHHHhhccccccCCCchhHHHHHHHHHHHHHhcCccceeeeccccccchhhhhhHHHHHHHHHHHHHHHHHhhhHhh
Q 010112 384 TVFMFALAIPYHHWTLKPNRIGFVIMYSLTFFFANFGPNATTFVVPAEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYA 463 (518)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 463 (518)
.++.++..... +...... ..+..+.......+...++..|.+|+++|++++++.+....+|..++|.+.+.+
T Consensus 76 ~~~~~~~~~~~-------~~~~l~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 147 (375)
T 2gfp_A 76 MLATLVAVTTS-------SLTVLIA-ASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLL 147 (375)
T ss_dssp HHHHHHHHHHH-------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhc-------cHHHHHH-HHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 88887777654 2222333 333333333334567778889999999999999999999999999999999998
Q ss_pred hhcCCCCcCCCCCCCcccchhHHHHHHHHHHHHHHHHh-hcccCCCC
Q 010112 464 AQSKDPTKRDAGYPAGIGVKNSLIMLGVVNFVGMICTL-CVPESKGR 509 (518)
Q Consensus 464 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 509 (518)
. +..+|+..|.+.+++.++..+... ++||++++
T Consensus 148 ~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 148 D-------------TMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp S-------------CHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred H-------------HhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 7 456899999988888887776444 66766543
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.27 E-value=2.9e-11 Score=120.43 Aligned_cols=182 Identities=16% Similarity=0.114 Sum_probs=124.0
Q ss_pred HhhhhhhhHHHHHHHhhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHhhhhhhhhhhhhcchhhHHHHHHHHHHHH
Q 010112 32 FFTDAYDLFCISLVTKLLGRIYYHVDGAKKPGTLPPNVSAAVNGVALCGTLAGQLFFGWLGDKLGRKKVYGITLILMVIS 111 (518)
Q Consensus 32 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~G~l~dr~Grr~~~~~~~~l~~i~ 111 (518)
.+........+....+.+.+.. +.+............+...++.++.+++.||+|||+.++.+....+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 286 IFQQFVGINVVLYYAPEVFKTL----------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS----------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHhcchHHHHhc----------CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHH
Confidence 3333334444555566676666 777778888888888999999999999999999999999998888887
Q ss_pred HHHhhhccCCchhhHHHHHHHHHHHhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010112 112 SIASGLSFGKSAKGVIATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGIVALIVSSAFD 191 (518)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~lg~~l~~~l~~~~~ 191 (518)
.+..+........+....+...-+..+.+.+ ..+....+.+|.+|.+.|++++++......+|..+++.+...+.+...
T Consensus 356 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~ 434 (491)
T 4gc0_A 356 MFSLGTAFYTQAPGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSW 434 (491)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766543221111112222223233333333 347778999999999999999999999999999988887766543211
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCcchHHHHhhhHHHHHHHHH-HhcCCCCcc
Q 010112 192 HHFKAPPYSVDPVGSTAPEADYVWRIVLMVGALPAALTYYW-RMRMPETAR 241 (518)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~ 241 (518)
. ....++...|++.+.++++..+. ++++||+..
T Consensus 435 ~-----------------~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 435 L-----------------VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp H-----------------HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred H-----------------HhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 0 01122556777777777766544 577999854
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.27 E-value=4.6e-11 Score=119.99 Aligned_cols=170 Identities=11% Similarity=-0.014 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHhHHhhHHHHHHH-hc------CCCCCcchhhhHHHHHHHHHHHHHHHhhcccchhhhhhhhhhc-cC
Q 010112 301 TTSTWFLLDIAFYSQNLFQKDIFSA-IG------WIPPAATMNAIHEVYKIARAQTLIALCSTVPGYWFTVAFIDYM-GR 372 (518)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~ 372 (518)
.....++....++....+.+.++.+ .| +++.+.+. ......++..++.+++|+++||+ ||
T Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~------------~~~~~~~~~~~~~~~~G~l~dr~~g~ 84 (524)
T 2xut_A 17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKD------------VFHSFVIGVYFFPLLGGWIADRFFGK 84 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHH------------HHHHHHHHHHHTHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445555556666676777776654 66 66665333 55666677788899999999999 99
Q ss_pred hhHHHHHHHHHHHHHHHHhhccccccCCCchhHHHHHHHHHHHHHhcCccceeeeccccccchhhhhhHHHH---HHHHH
Q 010112 373 FAIQMMGFFFMTVFMFALAIPYHHWTLKPNRIGFVIMYSLTFFFANFGPNATTFVVPAEIFPARLRSTCHGI---SAAAG 449 (518)
Q Consensus 373 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~ 449 (518)
|+.+..+.++.+++.++...... +.. .+.+..+..+.+.....+...+++.|.+|+++|+++.+. .+...
T Consensus 85 r~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 157 (524)
T 2xut_A 85 YNTILWLSLIYCVGHAFLAIFEH------SVQ-GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTI 157 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSS------CHH-HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcc------cHH-HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHH
Confidence 99999998888888777665430 122 233333333444444567778899999999999876666 88889
Q ss_pred HHHHHHHHhhhHhhhhcCCCCcCCCCCCCcccchhHHHHHHHHHHHHHHHHhh
Q 010112 450 KAGAIVGAFGFLYAAQSKDPTKRDAGYPAGIGVKNSLIMLGVVNFVGMICTLC 502 (518)
Q Consensus 450 ~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 502 (518)
++|..++|.+.+.+. +..||+..|.+.+++.+++.+..++
T Consensus 158 ~~g~~~g~~~~~~l~-------------~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 158 NFGSFFASLSMPLLL-------------KNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHTSTHHH-------------HTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHh-------------ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987 3458999999888887777665543
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=58.24 E-value=3.6 Score=19.82 Aligned_cols=14 Identities=50% Similarity=0.821 Sum_probs=11.3
Q ss_pred hhhhhhhhcchhhH
Q 010112 87 FFGWLGDKLGRKKV 100 (518)
Q Consensus 87 ~~G~l~dr~Grr~~ 100 (518)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35789999999865
Done!