Query 010113
Match_columns 518
No_of_seqs 164 out of 443
Neff 3.5
Searched_HMMs 46136
Date Thu Mar 28 21:12:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010113.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010113hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00249 Myb_DNA-binding: Myb- 99.1 7.8E-11 1.7E-15 88.4 3.2 47 401-451 1-48 (48)
2 PLN03212 Transcription repress 99.0 1.1E-09 2.3E-14 108.8 7.1 63 396-462 20-83 (249)
3 PF13921 Myb_DNA-bind_6: Myb-l 98.8 5.8E-09 1.2E-13 80.7 4.9 53 404-461 1-53 (60)
4 smart00717 SANT SANT SWI3, AD 98.8 7.2E-09 1.6E-13 74.0 5.0 48 401-452 1-48 (49)
5 PLN03091 hypothetical protein; 98.8 6.4E-09 1.4E-13 110.1 5.7 64 396-462 9-72 (459)
6 cd00167 SANT 'SWI3, ADA2, N-Co 98.7 2.7E-08 5.9E-13 70.2 4.7 45 403-451 1-45 (45)
7 KOG0048 Transcription factor, 98.6 2.9E-08 6.2E-13 96.8 5.3 57 401-461 9-66 (238)
8 PLN03212 Transcription repress 98.1 2.1E-06 4.6E-11 85.7 4.5 53 399-456 76-128 (249)
9 PLN03091 hypothetical protein; 98.0 5.2E-06 1.1E-10 88.5 4.8 50 400-454 66-115 (459)
10 TIGR01557 myb_SHAQKYF myb-like 97.5 0.00027 5.9E-09 56.4 5.7 47 399-448 1-51 (57)
11 KOG0049 Transcription factor, 97.4 0.00016 3.5E-09 80.4 4.5 59 399-461 358-416 (939)
12 KOG0048 Transcription factor, 97.4 0.00018 3.8E-09 70.6 4.3 53 399-456 60-112 (238)
13 KOG0457 Histone acetyltransfer 97.3 0.00027 5.9E-09 75.4 5.6 68 402-481 73-141 (438)
14 PF13837 Myb_DNA-bind_4: Myb/S 96.9 0.00047 1E-08 56.5 2.1 53 401-453 1-66 (90)
15 KOG0051 RNA polymerase I termi 96.9 0.00064 1.4E-08 75.3 3.5 56 400-461 383-440 (607)
16 KOG0049 Transcription factor, 96.5 0.0015 3.3E-08 73.0 2.5 52 397-452 408-459 (939)
17 PF13873 Myb_DNA-bind_5: Myb/S 95.9 0.0095 2.1E-07 48.4 3.7 53 401-453 2-71 (78)
18 COG5114 Histone acetyltransfer 94.9 0.037 8E-07 58.2 5.1 47 403-453 65-111 (432)
19 PF13325 MCRS_N: N-terminal re 94.3 0.034 7.4E-07 54.7 3.2 59 399-457 71-132 (199)
20 PF09111 SLIDE: SLIDE; InterP 94.3 0.037 8E-07 50.2 3.0 53 401-453 49-112 (118)
21 KOG0050 mRNA splicing protein 93.7 0.028 6E-07 61.9 1.4 58 401-462 7-64 (617)
22 COG5147 REB1 Myb superfamily p 93.6 0.069 1.5E-06 58.8 4.1 60 398-461 17-76 (512)
23 KOG1279 Chromatin remodeling f 93.4 0.087 1.9E-06 58.0 4.5 48 399-451 251-298 (506)
24 COG5259 RSC8 RSC chromatin rem 91.9 0.14 3E-06 56.1 3.5 47 400-451 278-324 (531)
25 COG5147 REB1 Myb superfamily p 91.1 0.071 1.5E-06 58.8 0.4 49 401-455 291-339 (512)
26 KOG4282 Transcription factor G 89.5 0.53 1.2E-05 48.3 5.1 81 401-488 54-143 (345)
27 PLN03142 Probable chromatin-re 88.9 0.47 1E-05 56.3 4.7 53 401-453 926-986 (1033)
28 PF11149 DUF2924: Protein of u 85.7 0.71 1.5E-05 43.3 3.0 39 108-146 7-45 (136)
29 KOG0051 RNA polymerase I termi 84.0 1.1 2.3E-05 50.6 4.0 59 399-461 434-518 (607)
30 PF08914 Myb_DNA-bind_2: Rap1 82.9 1.8 4E-05 35.7 3.9 50 401-453 2-59 (65)
31 KOG2656 DNA methyltransferase 77.3 1.8 4E-05 46.8 2.8 54 402-456 131-190 (445)
32 PF08074 CHDCT2: CHDCT2 (NUC03 73.8 2.1 4.5E-05 41.7 2.0 47 401-447 3-58 (173)
33 PF12776 Myb_DNA-bind_3: Myb/S 73.6 5.6 0.00012 33.0 4.3 50 403-452 1-63 (96)
34 COG5118 BDP1 Transcription ini 69.3 6.4 0.00014 42.8 4.5 52 397-453 361-412 (507)
35 KOG0384 Chromodomain-helicase 61.7 4 8.7E-05 49.6 1.5 53 400-452 1132-1192(1373)
36 PF04504 DUF573: Protein of un 53.8 30 0.00064 30.4 5.2 55 400-454 3-65 (98)
37 KOG0050 mRNA splicing protein 47.5 17 0.00037 41.1 3.3 50 400-455 58-107 (617)
38 PF09420 Nop16: Ribosome bioge 38.2 60 0.0013 30.6 5.0 52 399-451 112-163 (164)
39 KOG4468 Polycomb-group transcr 35.4 67 0.0015 37.2 5.5 27 400-427 87-113 (782)
40 PRK13923 putative spore coat p 27.0 39 0.00085 33.1 1.8 51 400-452 4-57 (170)
41 PLN03162 golden-2 like transcr 22.7 2.7E+02 0.0058 30.9 7.1 55 397-453 233-292 (526)
No 1
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.07 E-value=7.8e-11 Score=88.38 Aligned_cols=47 Identities=36% Similarity=0.653 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCC-CCChhhHHHHHHHhh
Q 010113 401 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYS-YRTSVDLKDKWRNLL 451 (518)
Q Consensus 401 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~-~RT~VDLKDKWRNLl 451 (518)
|++||+||++.|+++|.+||.++|..|... ++ +||..+|+++|++++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~----~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKR----MPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHH----HSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHH----cCCCCCHHHHHHHHHhhC
Confidence 578999999999999999999889999843 45 999999999999975
No 2
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.96 E-value=1.1e-09 Score=108.84 Aligned_cols=63 Identities=25% Similarity=0.399 Sum_probs=55.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccC-CCCChhhHHHHHHHhhccccCCCCCCc
Q 010113 396 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASY-SYRTSVDLKDKWRNLLKASLAQTPPDS 462 (518)
Q Consensus 396 krRK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f-~~RT~VDLKDKWRNLlK~s~~q~p~~~ 462 (518)
|.--++++||+||++.|++.|++||.++|..|... + .+||+.+|++||.|.+++.+.+++|-.
T Consensus 20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~----~g~gRT~KQCReRW~N~L~P~I~kgpWT~ 83 (249)
T PLN03212 20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKR----AGLLRCGKSCRLRWMNYLRPSVKRGGITS 83 (249)
T ss_pred cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHh----hhcCCCcchHHHHHHHhhchhcccCCCCh
Confidence 44455889999999999999999999999999742 3 589999999999999999999999953
No 3
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.81 E-value=5.8e-09 Score=80.70 Aligned_cols=53 Identities=34% Similarity=0.648 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 010113 404 WTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 461 (518)
Q Consensus 404 WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 461 (518)
||.+|++.|+.+|++||. +|+.|.. .|++||..+|++||++.+++....++|.
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~----~l~~Rt~~~~~~r~~~~l~~~~~~~~wt 53 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAE----HLGNRTPKQCRNRWRNHLRPKISRGPWT 53 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHH----HSTTS-HHHHHHHHHHTTSTTSTSSSSS
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHH----HHCcCCHHHHHHHHHHHCcccccCCCcC
Confidence 999999999999999996 9999974 3567999999999999877777777775
No 4
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.81 E-value=7.2e-09 Score=74.01 Aligned_cols=48 Identities=38% Similarity=0.694 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 010113 401 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 452 (518)
Q Consensus 401 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 452 (518)
+.+||++|++.|+.+|++||.++|..|.. .+++||..+|+++|+++++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~----~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAK----ELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHH----HcCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999779999984 3679999999999999875
No 5
>PLN03091 hypothetical protein; Provisional
Probab=98.78 E-value=6.4e-09 Score=110.12 Aligned_cols=64 Identities=23% Similarity=0.451 Sum_probs=56.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCc
Q 010113 396 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDS 462 (518)
Q Consensus 396 krRK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~ 462 (518)
|++.++++||+|||+.|++.|++||.++|..|.+. .-.+||+.+|++||.|.+.+.+.+++|-+
T Consensus 9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~---~g~gRT~KQCRERW~NyLdP~IkKgpWT~ 72 (459)
T PLN03091 9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQ---AGLQRCGKSCRLRWINYLRPDLKRGTFSQ 72 (459)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhh---hccCcCcchHhHHHHhccCCcccCCCCCH
Confidence 45566789999999999999999999999999742 12589999999999999999999999963
No 6
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.68 E-value=2.7e-08 Score=70.23 Aligned_cols=45 Identities=40% Similarity=0.777 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhh
Q 010113 403 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 451 (518)
Q Consensus 403 ~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLl 451 (518)
+||.+|++.|+.++++||.++|..|.. .+++||..+|+++|.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~----~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAK----ELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHh----HcCCCCHHHHHHHHHHhC
Confidence 599999999999999999889999984 367799999999999874
No 7
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.64 E-value=2.9e-08 Score=96.79 Aligned_cols=57 Identities=18% Similarity=0.386 Sum_probs=52.7
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCC-CCChhhHHHHHHHhhccccCCCCCC
Q 010113 401 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYS-YRTSVDLKDKWRNLLKASLAQTPPD 461 (518)
Q Consensus 401 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~-~RT~VDLKDKWRNLlK~s~~q~p~~ 461 (518)
+++||+|||+.|++-|++||.|+|..|.+. +. +|++.+|+-||.|.+++.+.+++|-
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~----~gl~R~GKSCRlRW~NyLrP~ikrg~fT 66 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKL----AGLRRCGKSCRLRWTNYLRPDLKRGNFS 66 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhh----cCCCccchHHHHHhhcccCCCccCCCCC
Confidence 699999999999999999999999999854 33 9999999999999999999988885
No 8
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.13 E-value=2.1e-06 Score=85.74 Aligned_cols=53 Identities=25% Similarity=0.318 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccC
Q 010113 399 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLA 456 (518)
Q Consensus 399 K~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~ 456 (518)
-.+.+||.||++.|++.+.+||. +|+.|.. .|++||..++|.||.++++....
T Consensus 76 I~kgpWT~EED~lLlel~~~~Gn-KWs~IAk----~LpGRTDnqIKNRWns~LrK~l~ 128 (249)
T PLN03212 76 VKRGGITSDEEDLILRLHRLLGN-RWSLIAG----RIPGRTDNEIKNYWNTHLRKKLL 128 (249)
T ss_pred cccCCCChHHHHHHHHHHHhccc-cHHHHHh----hcCCCCHHHHHHHHHHHHhHHHH
Confidence 34679999999999999999997 9999973 47999999999999998887654
No 9
>PLN03091 hypothetical protein; Provisional
Probab=98.01 E-value=5.2e-06 Score=88.51 Aligned_cols=50 Identities=26% Similarity=0.456 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 010113 400 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 454 (518)
Q Consensus 400 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s 454 (518)
++.+||.||++.|++.+++||. +|+.|.. .|++||..+||.||..+++..
T Consensus 66 kKgpWT~EED~lLLeL~k~~Gn-KWskIAk----~LPGRTDnqIKNRWnslLKKk 115 (459)
T PLN03091 66 KRGTFSQQEENLIIELHAVLGN-RWSQIAA----QLPGRTDNEIKNLWNSCLKKK 115 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhCc-chHHHHH----hcCCCCHHHHHHHHHHHHHHH
Confidence 3579999999999999999998 9999983 479999999999999988764
No 10
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.47 E-value=0.00027 Score=56.44 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=37.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCc---hhhhhhhcccCCCC-ChhhHHHHHH
Q 010113 399 KHHRAWTLSEVMKLVEGVSKYGAGRW---SEIKRLAFASYSYR-TSVDLKDKWR 448 (518)
Q Consensus 399 K~rr~WT~EEveaLv~GVeKyG~GkW---k~Il~~~f~~f~~R-T~VDLKDKWR 448 (518)
|+|..||+||.+.+++||+.||.|+| +.|+... ...| |..+++....
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~---~~~~lT~~qV~SH~Q 51 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELM---VVDGLTRDQVASHLQ 51 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHc---CCCCCCHHHHHHHHH
Confidence 46789999999999999999999999 9997421 1245 9999886544
No 11
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.37 E-value=0.00016 Score=80.40 Aligned_cols=59 Identities=27% Similarity=0.487 Sum_probs=53.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 010113 399 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 461 (518)
Q Consensus 399 K~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 461 (518)
-++.+||++|+..|+.+|++||...|.+|. ..|++|+..||++||-|.+..+...+-|.
T Consensus 358 ikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R----~~vPnRSdsQcR~RY~nvL~~s~K~~rW~ 416 (939)
T KOG0049|consen 358 VKHGRWTDQEDVLLVCAVSRYGAKDWAKVR----QAVPNRSDSQCRERYTNVLNRSAKVERWT 416 (939)
T ss_pred ccCCCCCCHHHHHHHHHHHHhCccchhhHH----HhcCCccHHHHHHHHHHHHHHhhccCcee
Confidence 457899999999999999999999999997 45799999999999999999888878885
No 12
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.37 E-value=0.00018 Score=70.56 Aligned_cols=53 Identities=25% Similarity=0.373 Sum_probs=46.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccC
Q 010113 399 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLA 456 (518)
Q Consensus 399 K~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~ 456 (518)
-+++.||+|||+.|+++-.+||. +|+.|+ ..|++||.-++|.-|...+|..+.
T Consensus 60 ikrg~fT~eEe~~Ii~lH~~~GN-rWs~IA----~~LPGRTDNeIKN~Wnt~lkkkl~ 112 (238)
T KOG0048|consen 60 LKRGNFSDEEEDLIIKLHALLGN-RWSLIA----GRLPGRTDNEVKNHWNTHLKKKLL 112 (238)
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-HHHHHH----hhCCCcCHHHHHHHHHHHHHHHHH
Confidence 44889999999999999999999 899998 458999999999999888775544
No 13
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.33 E-value=0.00027 Score=75.41 Aligned_cols=68 Identities=21% Similarity=0.363 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcc-ccCCCCCCcccccccCCCCCCCChHHH
Q 010113 402 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA-SLAQTPPDSRMGARKHASSVPIPMPVL 480 (518)
Q Consensus 402 r~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~-s~~q~p~~~g~~~Rk~~~~~piP~~iL 480 (518)
--||.+||-.|++|++.||.|||.+|++. ...||.-+||+.|.++.-. .+.+-||-. -.+++|+..+
T Consensus 73 ~~WtadEEilLLea~~t~G~GNW~dIA~h----IGtKtkeeck~hy~k~fv~s~~~~~~~i~--------~~~~~~q~e~ 140 (438)
T KOG0457|consen 73 PSWTADEEILLLEAAETYGFGNWQDIADH----IGTKTKEECKEHYLKHFVNSPIFPLPDIS--------LGIGVNQDED 140 (438)
T ss_pred CCCChHHHHHHHHHHHHhCCCcHHHHHHH----HcccchHHHHHHHHHHHhcCccccccccc--------cccCcchHHH
Confidence 35999999999999999999999999843 4589999999999988764 344444431 2455666554
Q ss_pred H
Q 010113 481 L 481 (518)
Q Consensus 481 ~ 481 (518)
+
T Consensus 141 ~ 141 (438)
T KOG0457|consen 141 A 141 (438)
T ss_pred h
Confidence 4
No 14
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.94 E-value=0.00047 Score=56.48 Aligned_cols=53 Identities=30% Similarity=0.460 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHHHh------hCC-----C--CchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 010113 401 HRAWTLSEVMKLVEGVSK------YGA-----G--RWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 453 (518)
Q Consensus 401 rr~WT~EEveaLv~GVeK------yG~-----G--kWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 453 (518)
|..||.+|+..|++.+.. |+. + .|..|...-...=-.||+.+|++||.||.+.
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~ 66 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKK 66 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 568999999999999887 321 1 5999985311111279999999999999984
No 15
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=96.92 E-value=0.00064 Score=75.31 Aligned_cols=56 Identities=27% Similarity=0.452 Sum_probs=49.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccc--CCCCCC
Q 010113 400 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL--AQTPPD 461 (518)
Q Consensus 400 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~--~q~p~~ 461 (518)
.+..||+||++.|...|.++|. .|+.|.+ .-+|.+.+|+|+||+.++.+. ..++|-
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~-----~lgr~P~~crd~wr~~~~~g~~~~r~~Ws 440 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGK-----ALGRMPMDCRDRWRQYVKCGSKRNRGAWS 440 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcc-cHHHHHH-----HHccCcHHHHHHHHHhhccccccccCcch
Confidence 5778999999999999999998 9999964 358999999999999999875 556774
No 16
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.47 E-value=0.0015 Score=73.00 Aligned_cols=52 Identities=29% Similarity=0.498 Sum_probs=43.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 010113 397 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 452 (518)
Q Consensus 397 rRK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 452 (518)
++-+...||..|++.|+..|++||.|+|.+|+ ..+++||..++..+-+.++.
T Consensus 408 ~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA----~~Lp~~t~~q~~rrR~R~~~ 459 (939)
T KOG0049|consen 408 RSAKVERWTLVEDEQLLYAVKVYGKGNWAKCA----MLLPKKTSRQLRRRRLRLIA 459 (939)
T ss_pred HhhccCceeecchHHHHHHHHHHccchHHHHH----HHccccchhHHHHHHHHHHH
Confidence 44557789999999999999999999999997 34789999888776655554
No 17
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=95.86 E-value=0.0095 Score=48.36 Aligned_cols=53 Identities=32% Similarity=0.341 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHhh-----CC-----------CCchhhhhhhcccC-CCCChhhHHHHHHHhhcc
Q 010113 401 HRAWTLSEVMKLVEGVSKY-----GA-----------GRWSEIKRLAFASY-SYRTSVDLKDKWRNLLKA 453 (518)
Q Consensus 401 rr~WT~EEveaLv~GVeKy-----G~-----------GkWk~Il~~~f~~f-~~RT~VDLKDKWRNLlK~ 453 (518)
...||.+|.+.|++.|++| |. ..|..|........ ..||..+|+.+|.||...
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~ 71 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK 71 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999998 31 36999986433222 489999999999999764
No 18
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.88 E-value=0.037 Score=58.18 Aligned_cols=47 Identities=21% Similarity=0.541 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 010113 403 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 453 (518)
Q Consensus 403 ~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 453 (518)
.|+..|+-.|+++.+..|.|+|.+|.+. ...|+.-++|+.|-.+.-.
T Consensus 65 ~WgadEEllli~~~~TlGlGNW~dIady----iGsr~kee~k~HylK~y~e 111 (432)
T COG5114 65 GWGADEELLLIECLDTLGLGNWEDIADY----IGSRAKEEIKSHYLKMYDE 111 (432)
T ss_pred CcCchHHHHHHHHHHhcCCCcHHHHHHH----HhhhhhHHHHHHHHHHHhh
Confidence 5999999999999999999999999842 4589999999999877763
No 19
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=94.34 E-value=0.034 Score=54.66 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=49.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhC--CCCchhhhhhhcccC-CCCChhhHHHHHHHhhccccCC
Q 010113 399 KHHRAWTLSEVMKLVEGVSKYG--AGRWSEIKRLAFASY-SYRTSVDLKDKWRNLLKASLAQ 457 (518)
Q Consensus 399 K~rr~WT~EEveaLv~GVeKyG--~GkWk~Il~~~f~~f-~~RT~VDLKDKWRNLlK~s~~q 457 (518)
..+-+||.+|++.|........ ...+.+|+..+...| ..||+.+|.+.|+.|.+....+
T Consensus 71 q~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~ 132 (199)
T PF13325_consen 71 QSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLP 132 (199)
T ss_pred cccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhh
Confidence 3478999999999999877764 468999998777777 6899999999999988776664
No 20
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=94.28 E-value=0.037 Score=50.18 Aligned_cols=53 Identities=28% Similarity=0.481 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHhhCC---CCchhhhhh-----h--cc-cCCCCChhhHHHHHHHhhcc
Q 010113 401 HRAWTLSEVMKLVEGVSKYGA---GRWSEIKRL-----A--FA-SYSYRTSVDLKDKWRNLLKA 453 (518)
Q Consensus 401 rr~WT~EEveaLv~GVeKyG~---GkWk~Il~~-----~--f~-~f~~RT~VDLKDKWRNLlK~ 453 (518)
.+.||.+||..|+..+.+||. |.|..|+.. . |+ .|..||+.+|..|-..|++.
T Consensus 49 ~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~ 112 (118)
T PF09111_consen 49 KKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL 112 (118)
T ss_dssp -SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence 678999999999999999999 999999863 1 22 13699999999999998874
No 21
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=93.72 E-value=0.028 Score=61.90 Aligned_cols=58 Identities=26% Similarity=0.458 Sum_probs=52.3
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCc
Q 010113 401 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDS 462 (518)
Q Consensus 401 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~ 462 (518)
-.-|+..|++.|..+|.+||...|+.|.. .++..|..+|+.+|--.+.+++....|.+
T Consensus 7 ggvwrntEdeilkaav~kyg~nqws~i~s----ll~~kt~rqC~~rw~e~ldp~i~~tews~ 64 (617)
T KOG0050|consen 7 GGVWRNTEDEVLKAAVMKYGKNQWSRIAS----LLNRKTARQCKARWEEWLDPAIKKTEWSR 64 (617)
T ss_pred cceecccHHHHHHHHHHHcchHHHHHHHH----HHhhcchhHHHHHHHHHhCHHHhhhhhhh
Confidence 45799999999999999999999999973 46789999999999999999999888864
No 22
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=93.59 E-value=0.069 Score=58.85 Aligned_cols=60 Identities=22% Similarity=0.399 Sum_probs=52.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 010113 398 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 461 (518)
Q Consensus 398 RK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 461 (518)
.+....|+..||+.|.-+|++||.-+|+.|. ..|..||+.|++-+|-|.+.+.+.+..|.
T Consensus 17 ~~k~gsw~~~EDe~l~~~vk~l~~nnws~va----s~~~~~~~kq~~~rw~~~lnp~lk~~~~~ 76 (512)
T COG5147 17 KRKGGSWKRTEDEDLKALVKKLGPNNWSKVA----SLLISSTGKQSSNRWNNHLNPQLKKKNWS 76 (512)
T ss_pred eecCCCCCCcchhHHHHHHhhcccccHHHHH----HHhcccccccccchhhhhhchhccccccc
Confidence 3446699999999999999999999999997 44667999999999999888887777664
No 23
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=93.41 E-value=0.087 Score=58.00 Aligned_cols=48 Identities=21% Similarity=0.425 Sum_probs=42.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhh
Q 010113 399 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 451 (518)
Q Consensus 399 K~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLl 451 (518)
..+..||.+|.-.|++||++||- .|.+|.. ....||.-||-.|+..|=
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~----hVg~ks~eqCI~kFL~LP 298 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMYGD-DWNKVAD----HVGTKSQEQCILKFLRLP 298 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHhcc-cHHHHHh----ccCCCCHHHHHHHHHhcC
Confidence 44678999999999999999999 9999973 356999999999998763
No 24
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=91.94 E-value=0.14 Score=56.09 Aligned_cols=47 Identities=23% Similarity=0.543 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhh
Q 010113 400 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 451 (518)
Q Consensus 400 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLl 451 (518)
.-.+||.+|.-.|++||+.||. .|.+|+. ...++|--||--||-+|=
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~----HVgtKt~EqCIl~FL~LP 324 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGD-DWDKVAR----HVGTKTKEQCILHFLQLP 324 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhh-hHHHHHH----HhCCCCHHHHHHHHHcCC
Confidence 3569999999999999999999 9999984 356999999999987653
No 25
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=91.12 E-value=0.071 Score=58.75 Aligned_cols=49 Identities=31% Similarity=0.562 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccc
Q 010113 401 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL 455 (518)
Q Consensus 401 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~ 455 (518)
+..||.+|+..|..-+.++|. .|+.|.. ..+|-+.+|.|+||+.++.+.
T Consensus 291 ~~~wt~e~~~eL~~~~~~~~~-~w~~ig~-----~~~rmp~~crd~wr~~~~~g~ 339 (512)
T COG5147 291 RGKWTKEEEQELAKLVVEHGG-SWTEIGK-----LLGRMPNDCRDRWRDYVKCGD 339 (512)
T ss_pred hccCccccccccccccccccc-hhhHhhh-----hhccCcHHHHHHHhhhccccC
Confidence 567999999999999999998 9999964 348999999999999999863
No 26
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=89.49 E-value=0.53 Score=48.32 Aligned_cols=81 Identities=21% Similarity=0.242 Sum_probs=53.3
Q ss_pred CCCCCHHHHHHHHHHHHhh----CCCC-----chhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCcccccccCCC
Q 010113 401 HRAWTLSEVMKLVEGVSKY----GAGR-----WSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHAS 471 (518)
Q Consensus 401 rr~WT~EEveaLv~GVeKy----G~Gk-----Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~g~~~Rk~~~ 471 (518)
...|+.+|+.+|++...+. ..|+ |..|.......=..||+.+||.||.||.+..-. ... ++..+
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~--~k~-----~~~~~ 126 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKK--EKA-----KKEGS 126 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH--Hhc-----ccCCC
Confidence 6899999999999887643 4455 999986222222479999999999999985321 100 11001
Q ss_pred CCCCChHHHHHHHHHHh
Q 010113 472 SVPIPMPVLLRVRELAE 488 (518)
Q Consensus 472 ~~piP~~iL~RVreLA~ 488 (518)
...-+..+..++-.|.-
T Consensus 127 ~~~s~~~ff~~le~~~~ 143 (345)
T KOG4282|consen 127 GEGSSWKFFSELEALLI 143 (345)
T ss_pred CCCccchHHHHHHHHHh
Confidence 23446677777666664
No 27
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=88.94 E-value=0.47 Score=56.31 Aligned_cols=53 Identities=23% Similarity=0.330 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhh-------hcc-cCCCCChhhHHHHHHHhhcc
Q 010113 401 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRL-------AFA-SYSYRTSVDLKDKWRNLLKA 453 (518)
Q Consensus 401 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~-------~f~-~f~~RT~VDLKDKWRNLlK~ 453 (518)
.+.||.+|+..|+..+.+||.|+|..|+.. .|+ .|..||+..|+.|-..|++.
T Consensus 926 ~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~~ 986 (1033)
T PLN03142 926 GKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIRL 986 (1033)
T ss_pred CCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHHH
Confidence 457999999999999999999999999752 122 24799999999999888874
No 28
>PF11149 DUF2924: Protein of unknown function (DUF2924); InterPro: IPR021322 This entry is represented by Bacteriophage WO, Gp30. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This bacterial family of proteins has no known function.
Probab=85.65 E-value=0.71 Score=43.27 Aligned_cols=39 Identities=26% Similarity=0.575 Sum_probs=36.7
Q ss_pred eccCcCHHHHHHHHhhhcCCccccchhHHHHHHhhhccc
Q 010113 108 CLDNLSIKELHETFKATFGRETTVKDKQWLKRRIAMGLT 146 (518)
Q Consensus 108 ~LDnLsireL~E~FratFGReTtVKDK~WLKRrI~mGL~ 146 (518)
-|..|++.||.+.++..||.++---.++||.+||+.-++
T Consensus 7 ~L~~l~~~eL~~~W~~~fg~~pp~~~r~~L~~rlAyriQ 45 (136)
T PF11149_consen 7 ALPDLPMPELRARWRRLFGSPPPHHNRDFLERRLAYRIQ 45 (136)
T ss_pred hcccCCHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999998775
No 29
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=83.95 E-value=1.1 Score=50.65 Aligned_cols=59 Identities=20% Similarity=0.443 Sum_probs=47.1
Q ss_pred CCCCCCCHHHHHHHHHHHH-------hh------------------CCCCchhhhhhhcccCCCCChhhHHHHHHHhhc-
Q 010113 399 KHHRAWTLSEVMKLVEGVS-------KY------------------GAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK- 452 (518)
Q Consensus 399 K~rr~WT~EEveaLv~GVe-------Ky------------------G~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK- 452 (518)
+.+.+||.||++.|++.|+ .| -.-+|..|.. .+..|+.++|+-||-.|+.
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse----~~~TR~~~qCr~Kw~kl~~~ 509 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSE----MLGTRSRIQCRYKWYKLTTS 509 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhH----hhcCCCcchHHHHHHHHHhh
Confidence 5689999999999999996 44 1238999974 4679999999999999988
Q ss_pred cccCCCCCC
Q 010113 453 ASLAQTPPD 461 (518)
Q Consensus 453 ~s~~q~p~~ 461 (518)
+++.+.+|.
T Consensus 510 ~s~n~~~~~ 518 (607)
T KOG0051|consen 510 PSFNKRQES 518 (607)
T ss_pred HHhhccccc
Confidence 555555554
No 30
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=82.89 E-value=1.8 Score=35.66 Aligned_cols=50 Identities=18% Similarity=0.310 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHHHHHHhhCC------C--CchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 010113 401 HRAWTLSEVMKLVEGVSKYGA------G--RWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 453 (518)
Q Consensus 401 rr~WT~EEveaLv~GVeKyG~------G--kWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 453 (518)
|.+||.+||.+|++-|.++.. | -|+.+... ....+|--.++|+|+.-++.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~---~~t~HtwQSwR~Ry~K~L~~ 59 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEK---HPTRHTWQSWRDRYLKHLRG 59 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS----SSS--SHHHHHHHHHHT--
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhc
Confidence 678999999999999966532 2 25555421 22489999999999776654
No 31
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=77.27 E-value=1.8 Score=46.83 Aligned_cols=54 Identities=30% Similarity=0.437 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCchhhhhhhc-ccC-CCCChhhHHHHH----HHhhccccC
Q 010113 402 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAF-ASY-SYRTSVDLKDKW----RNLLKASLA 456 (518)
Q Consensus 402 r~WT~EEveaLv~GVeKyG~GkWk~Il~~~f-~~f-~~RT~VDLKDKW----RNLlK~s~~ 456 (518)
..||.+|.+.|.+..++|-. +|-.|.+.+- ..| .+||--|||||| |+|+++.-.
T Consensus 131 n~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~ 190 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAP 190 (445)
T ss_pred ccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHccCC
Confidence 57999999999999999999 9999986432 235 459999999998 566665443
No 32
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=73.79 E-value=2.1 Score=41.66 Aligned_cols=47 Identities=30% Similarity=0.642 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhh-cccC--CCCCh------hhHHHHH
Q 010113 401 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLA-FASY--SYRTS------VDLKDKW 447 (518)
Q Consensus 401 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~-f~~f--~~RT~------VDLKDKW 447 (518)
..-|-..-|=.|+.||-+||-|+|.+|.++. |.++ +-++. -++|.||
T Consensus 3 ~~iw~r~hdywll~gi~~hgy~rwqdi~nd~~f~IiNEPFk~e~~kgnfle~KNkF 58 (173)
T PF08074_consen 3 YEIWHRRHDYWLLAGIVKHGYGRWQDIQNDPRFAIINEPFKTESQKGNFLEMKNKF 58 (173)
T ss_pred hhhhhhhhhHHHHhHHhhccchhHHHHhcCCceeeecccccccccccchHHHHHHH
Confidence 4568888889999999999999999999753 3333 22333 4888876
No 33
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=73.57 E-value=5.6 Score=32.97 Aligned_cols=50 Identities=26% Similarity=0.389 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHhh-------CCCC-----chhhhhhhcccC-CCCChhhHHHHHHHhhc
Q 010113 403 AWTLSEVMKLVEGVSKY-------GAGR-----WSEIKRLAFASY-SYRTSVDLKDKWRNLLK 452 (518)
Q Consensus 403 ~WT~EEveaLv~GVeKy-------G~Gk-----Wk~Il~~~f~~f-~~RT~VDLKDKWRNLlK 452 (518)
.||+++++.|++.+... +.|. |..|.......+ ..-|..+||.||..|.+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 59999999999988654 2333 666664322223 45678899999887766
No 34
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=69.34 E-value=6.4 Score=42.85 Aligned_cols=52 Identities=23% Similarity=0.397 Sum_probs=45.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 010113 397 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 453 (518)
Q Consensus 397 rRK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 453 (518)
+++..-+||.+|.+.+..++..+|. .+..|.. .|++|...++|-||.+-.|.
T Consensus 361 ~~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~----lfP~R~RkqIKaKfi~Eek~ 412 (507)
T COG5118 361 KKKGALRWSKKEIEKFYKALSIWGT-DFSLISS----LFPNRERKQIKAKFIKEEKV 412 (507)
T ss_pred CCCCCCcccHHHHHHHHHHHHHhcc-hHHHHHH----hcCchhHHHHHHHHHHHhhh
Confidence 3566789999999999999999999 8999974 47899999999999876664
No 35
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=61.68 E-value=4 Score=49.57 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCC--------CCChhhHHHHHHHhhc
Q 010113 400 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYS--------YRTSVDLKDKWRNLLK 452 (518)
Q Consensus 400 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~--------~RT~VDLKDKWRNLlK 452 (518)
.---|..+|+..|+-||-+||-|+|..|+.+..--|. .=++++|.-|=.-|+.
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~l~dKi~~~e~~P~a~~L~~R~~yLls 1192 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLGLTDKIFLVETVPQAKHLQRRADYLLS 1192 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccCccccchhhhcccccCCchHHHHHHHHHHHH
Confidence 4567999999999999999999999999976442222 3345667666555554
No 36
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=53.85 E-value=30 Score=30.45 Aligned_cols=55 Identities=20% Similarity=0.331 Sum_probs=37.9
Q ss_pred CCCCCCHHHHHHHHHHHHhh----CCCCchhhhhhh---cccC-CCCChhhHHHHHHHhhccc
Q 010113 400 HHRAWTLSEVMKLVEGVSKY----GAGRWSEIKRLA---FASY-SYRTSVDLKDKWRNLLKAS 454 (518)
Q Consensus 400 ~rr~WT~EEveaLv~GVeKy----G~GkWk~Il~~~---f~~f-~~RT~VDLKDKWRNLlK~s 454 (518)
-.|-||+++|-.|++|+-.| |.....++-..+ ...+ .+=+..||.||-|.|.+.-
T Consensus 3 ~qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky 65 (98)
T PF04504_consen 3 FQRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKY 65 (98)
T ss_pred CcCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Confidence 35779999999999999888 765444443211 1112 2347789999999988853
No 37
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=47.51 E-value=17 Score=41.07 Aligned_cols=50 Identities=22% Similarity=0.349 Sum_probs=42.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccc
Q 010113 400 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL 455 (518)
Q Consensus 400 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~ 455 (518)
++--|+.||++.|+....-+-. .|..|+. +-+||+-+|-.||-+|+-...
T Consensus 58 ~~tews~eederlLhlakl~p~-qwrtIa~-----i~gr~~~qc~eRy~~ll~~~~ 107 (617)
T KOG0050|consen 58 KKTEWSREEDERLLHLAKLEPT-QWRTIAD-----IMGRTSQQCLERYNNLLDVYV 107 (617)
T ss_pred hhhhhhhhHHHHHHHHHHhcCC-ccchHHH-----HhhhhHHHHHHHHHHHHHHHH
Confidence 3567999999999999888877 9999974 458999999999999987433
No 38
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=38.16 E-value=60 Score=30.62 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=40.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhh
Q 010113 399 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 451 (518)
Q Consensus 399 K~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLl 451 (518)
++.++=|..|.+.+...|++||. .+.....+.--..--.|..+|+.+.+.+.
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhGd-Dy~aMarD~KLN~~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHGD-DYKAMARDRKLNYMQHTPGQLRRKIRKYK 163 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-cHHHHhccCCCCcccCCHHHHHHHHHHhc
Confidence 56778899999999999999997 77777654322334689999998877653
No 39
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=35.40 E-value=67 Score=37.18 Aligned_cols=27 Identities=19% Similarity=0.471 Sum_probs=24.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhh
Q 010113 400 HHRAWTLSEVMKLVEGVSKYGAGRWSEI 427 (518)
Q Consensus 400 ~rr~WT~EEveaLv~GVeKyG~GkWk~I 427 (518)
.++.||-.|++.+.+|+..||. ....|
T Consensus 87 ~ktaWt~~E~~~Ffdal~~~GK-dFe~V 113 (782)
T KOG4468|consen 87 AKTAWTHQEEESFFDALRQVGK-DFEKV 113 (782)
T ss_pred cccccchhhHHHHHHHHHHhcc-cHHHH
Confidence 3779999999999999999999 77777
No 40
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=26.96 E-value=39 Score=33.05 Aligned_cols=51 Identities=24% Similarity=0.292 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcc---cCCCCChhhHHHHHHHhhc
Q 010113 400 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFA---SYSYRTSVDLKDKWRNLLK 452 (518)
Q Consensus 400 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~---~f~~RT~VDLKDKWRNLlK 452 (518)
+...||.||+..|-+-|-+|+.--=+.+. .|. ..-.||+..|.+||-..++
T Consensus 4 rqdawt~e~d~llae~vl~~i~eg~tql~--afe~~g~~L~rt~aac~fRwNs~vr 57 (170)
T PRK13923 4 RQDAWTQERDGLLAEVVLRHIREGGTQLK--AFEEVGDALKRTAAACGFRWNSVVR 57 (170)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhccchHHH--HHHHHHHHHhhhHHHHHhHHHHHHH
Confidence 35689999999999999999763323343 222 2358999999999955555
No 41
>PLN03162 golden-2 like transcription factor; Provisional
Probab=22.72 E-value=2.7e+02 Score=30.95 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=40.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCC--CchhhhhhhcccCCCCChhhHH---HHHHHhhcc
Q 010113 397 RRKHHRAWTLSEVMKLVEGVSKYGAG--RWSEIKRLAFASYSYRTSVDLK---DKWRNLLKA 453 (518)
Q Consensus 397 rRK~rr~WT~EEveaLv~GVeKyG~G--kWk~Il~~~f~~f~~RT~VDLK---DKWRNLlK~ 453 (518)
++|.|-.||+|=-+.++++|++.|.- .-+.|++. -...+=|.-++| .|||..++.
T Consensus 233 ~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILel--MnV~GLTRenVKSHLQKYRl~rk~ 292 (526)
T PLN03162 233 KKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILEL--MGVQCLTRHNIASHLQKYRSHRRH 292 (526)
T ss_pred CCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHH--cCCCCcCHHHHHHHHHHHHHhccc
Confidence 45778999999999999999999952 34566642 123556666665 678888773
Done!