BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010114
(518 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 140/527 (26%), Positives = 221/527 (41%), Gaps = 40/527 (7%)
Query: 1 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
++Y+EL V AN L D KGD +AI MPM A + LA G V I F+
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 60 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDV 112
+A R+ S ++ + T D +R GR PL V A + IVL G+D+
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 113 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS 172
+DL W+D + P + N D + IL++SG+TG+PK + T
Sbjct: 228 DW-QEGRDLWWRDLIEKAS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGY 281
Query: 173 IRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGK 230
+ A + ++ D GD+Y ++GWV G +L+ GAT +++G P + +
Sbjct: 282 LVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPAR 341
Query: 231 FVQ---DAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 285
Q V +L T P+ ++A +EG D + +R S GE N + W
Sbjct: 342 MCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY--- 398
Query: 286 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYP 338
W E C + G + GA +A ++D G +P
Sbjct: 399 -WKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HP 455
Query: 339 DDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV 398
+ G + + + G + R L DHE +K M GD +R GY +
Sbjct: 456 QEGATEGNLVITDSWPGQA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWI 512
Query: 399 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT 458
GR DD +N+ G + + EIE A I E A + + A G + + +V L G
Sbjct: 513 TGRVDDVLNVSGHRLGTAEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEE 570
Query: 459 SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 505
P+ L ++ ++ PL ++ P+T S K++RR+LR
Sbjct: 571 PSPE-LYAEVRNWVEKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 140/527 (26%), Positives = 221/527 (41%), Gaps = 40/527 (7%)
Query: 1 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
++Y+EL V AN L D KGD +AI MPM A + LA G V I F+
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 60 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDV 112
+A R+ S ++ + T D +R GR PL V A + IVL G+D+
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 113 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS 172
+DL W+D + P + N D + IL++SG+TG+PK + T
Sbjct: 228 DW-QEGRDLWWRDLIEKAS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGY 281
Query: 173 IRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGK 230
+ A + ++ D GD+Y ++GWV G +L+ GAT +++G P + +
Sbjct: 282 LVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPAR 341
Query: 231 FVQ---DAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 285
Q V +L T P+ ++A +EG D + +R S GE N + W
Sbjct: 342 MCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWY--- 398
Query: 286 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYP 338
W E C + G + GA +A ++D G +P
Sbjct: 399 -WKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HP 455
Query: 339 DDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV 398
+ G + + + G + R L DHE +K M GD +R GY +
Sbjct: 456 QEGATEGNLVITDSWPGQA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWI 512
Query: 399 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT 458
GR DD +N+ G + + EIE A I E A + + A G + + +V L G
Sbjct: 513 TGRVDDVLNVSGHRLGTAEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEE 570
Query: 459 SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 505
P+ L ++ ++ PL ++ P+T S K++RR+LR
Sbjct: 571 PSPE-LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 140/527 (26%), Positives = 221/527 (41%), Gaps = 40/527 (7%)
Query: 1 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
++Y+EL V AN L D KGD +AI MPM A + LA G V I F+
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 60 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDV 112
+A R+ S ++ + T D +R GR PL V A + IVL G+D+
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 113 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS 172
+DL W+D + P + N D + IL++SG+TG+PK + T
Sbjct: 228 DW-QEGRDLWWRDLIEKAS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGY 281
Query: 173 IRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGK 230
+ A + ++ D GD+Y ++GWV G +L+ GAT +++G P + +
Sbjct: 282 LVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPAR 341
Query: 231 FVQ---DAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 285
Q V +L T P+ ++A +EG D + +R S GE N + W
Sbjct: 342 MCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY--- 398
Query: 286 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYP 338
W E C + G + GA +A ++D G +P
Sbjct: 399 -WKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HP 455
Query: 339 DDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV 398
+ G + + + G + R L DHE +K M GD +R GY +
Sbjct: 456 QEGATEGNLVITDSWPGQA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWI 512
Query: 399 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT 458
GR DD +N+ G + + EIE A I E A + + A G + + +V L G
Sbjct: 513 TGRVDDVLNVSGHRLGTAEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEE 570
Query: 459 SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 505
P+ L ++ ++ PL ++ P+T S K++RR+LR
Sbjct: 571 PSPE-LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 140/527 (26%), Positives = 220/527 (41%), Gaps = 40/527 (7%)
Query: 1 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
++Y+EL V AN L D KGD +AI MPM A + LA G V I F+
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 60 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDV 112
+A R+ S ++ + T D +R GR PL V A + IVL G+D+
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 113 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS 172
+DL W+D + P + N D + IL++SG+TG+PK + T
Sbjct: 228 DW-QEGRDLWWRDLIEKAS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGY 281
Query: 173 IRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGK 230
+ A + ++ D GD+Y ++GWV G +L+ GAT +++G P + +
Sbjct: 282 LVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPAR 341
Query: 231 FVQ---DAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 285
Q V +L T P+ ++A +EG D + +R S GE N + W
Sbjct: 342 MCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY--- 398
Query: 286 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYP 338
W E C + G + GA +A ++D G +P
Sbjct: 399 -WKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HP 455
Query: 339 DDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV 398
+ G + + + G + R L DHE +K M GD +R GY +
Sbjct: 456 QEGATEGNLVITDSWPGQA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWI 512
Query: 399 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT 458
GR DD +N+ G + + EIE A I E A + + A G + + +V L G
Sbjct: 513 TGRVDDVLNVSGHRLGTAEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEE 570
Query: 459 SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 505
P+ L + ++ PL ++ P+T S K++RR+LR
Sbjct: 571 PSPE-LYAEVRNWVAKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 139/527 (26%), Positives = 220/527 (41%), Gaps = 40/527 (7%)
Query: 1 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
++Y+EL V AN L D KGD +AI MPM A + LA G V I F+
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 60 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDV 112
+A R+ S ++ + T D +R GR PL V A + IVL G+D+
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 113 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS 172
+DL W+D + P + N D + IL++SG+TG+PK + T
Sbjct: 228 DW-QEGRDLWWRDLIEKAS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGY 281
Query: 173 IRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGK 230
+ A + ++ D GD+Y ++GWV G +L+ GAT +++G P + +
Sbjct: 282 LVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPAR 341
Query: 231 FVQ---DAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 285
Q V +L T P+ ++A +EG D + +R S GE N + W
Sbjct: 342 MCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY--- 398
Query: 286 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYP 338
W E C + G + GA +A ++D G +P
Sbjct: 399 -WKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HP 455
Query: 339 DDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV 398
+ G + + + G + R L DHE +K M GD +R GY +
Sbjct: 456 QEGATEGNLVITDSWPGQA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWI 512
Query: 399 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT 458
GR DD +N+ G + + EIE A I E A + + A G + + +V L G
Sbjct: 513 TGRVDDVLNVSGHRLGTAEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEE 570
Query: 459 SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 505
P+ L ++ ++ PL ++ P+T S ++RR+LR
Sbjct: 571 PSPE-LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGAIMRRILR 616
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 141 bits (355), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 139/527 (26%), Positives = 220/527 (41%), Gaps = 40/527 (7%)
Query: 1 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
++Y+EL V AN L D KGD +AI MPM A + LA G V I F+
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 60 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDV 112
+A R+ S ++ + T D +R G PL V A + IVL G+D+
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGASIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 113 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS 172
+DL W+D + P + N D + IL++SG+TG+PK + T
Sbjct: 228 DW-QEGRDLWWRDLIEKAS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGY 281
Query: 173 IRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGK 230
+ A + ++ D GD+Y ++GWV G +L+ GAT +++G P + +
Sbjct: 282 LVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPAR 341
Query: 231 FVQ---DAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 285
Q V +L T P+ ++A +EG D + +R S GE N + W
Sbjct: 342 MCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY--- 398
Query: 286 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYP 338
W E C + G + GA +A ++D G +P
Sbjct: 399 -WKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HP 455
Query: 339 DDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV 398
+ G + + + G + R L DHE +K M GD +R GY +
Sbjct: 456 QEGATEGNLVITDSWPGQA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWI 512
Query: 399 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT 458
GR DD +N+ G + + EIE A I E A + + A G + + +V L G
Sbjct: 513 TGRVDDVLNVSGHRLGTAEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEE 570
Query: 459 SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 505
P+ L ++ ++ PL ++ P+T S K++RR+LR
Sbjct: 571 PSPE-LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 139/527 (26%), Positives = 220/527 (41%), Gaps = 40/527 (7%)
Query: 1 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
++Y+EL V AN L D KGD +AI MPM A + LA G V I F+
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 60 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDV 112
+A + S ++ + T D +R GR PL V A + IVL G+D+
Sbjct: 168 PEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 113 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS 172
+DL W+D + P + N D + IL++SG+TG+PK + T
Sbjct: 228 DW-QEGRDLWWRDLIEKAS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGY 281
Query: 173 IRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGK 230
+ A + ++ D GD+Y ++GWV G +L+ GAT +++G P + +
Sbjct: 282 LVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPAR 341
Query: 231 FVQ---DAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 285
Q V +L T P+ ++A +EG D + +R S GE N + W
Sbjct: 342 MCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY--- 398
Query: 286 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYP 338
W E C + G + GA +A ++D G +P
Sbjct: 399 -WKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HP 455
Query: 339 DDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV 398
+ G + + + G + R L DHE +K M GD +R GY +
Sbjct: 456 QEGATEGNLVITDSWPGQA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWI 512
Query: 399 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT 458
GR DD +N+ G + + EIE A I E A + + A G + + +V L G
Sbjct: 513 TGRVDDVLNVSGHRLGTAEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEE 570
Query: 459 SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 505
P+ L ++ ++ PL ++ P+T S K++RR+LR
Sbjct: 571 PSPE-LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 128/537 (23%), Positives = 229/537 (42%), Gaps = 50/537 (9%)
Query: 1 MTYKELREQVMLVANALDTMFS--KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF 58
+TYKEL E+V VA L KGD +A+ MPM A+I LAI G + + F
Sbjct: 114 ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 173
Query: 59 AAREIATRLRVSKAKGIFTQDFILRGGRKFP---LYSKVLGAAP-LKAIVLPAIGNDVGI 114
++ + R+ +K + T D RGG+ + L P ++ +++ N+ +
Sbjct: 174 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV 233
Query: 115 PLRE-QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAV--VNILFSSGTTGEPKAIPWTQ-- 169
+DL W + + YY PVD+ + +L++SG+TG PK + +
Sbjct: 234 AFHAPRDLDW-----ATEKKKYKTYYP--CTPVDSEDPLFLLYTSGSTGAPKGVQHSTAG 286
Query: 170 -----LSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQGSP 223
L ++R T D DV+ ++GW+ G +++ L G +++G+P
Sbjct: 287 YLLGALLTMRYT------FDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTP 340
Query: 224 LERSFGKF---VQDAGVTVLGTVPSLVKAWRNT--NCLEGLDWTKIRSFASTGETSNVDD 278
++ ++ + + VT P+ ++ + + +E +R S GE +
Sbjct: 341 AYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEV 400
Query: 279 DLWLSSKAWYNA--IIESCGGTELSSAYIQ--GSLLQPQAFGAFSTATMTAGLVILDECG 334
W S K N I+++ TE S + + P G+ S V+LD
Sbjct: 401 WEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNT 460
Query: 335 VPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGG 394
+ G + + + + R + +H+ + Y G GD + G
Sbjct: 461 GEELNTSHAEGVLAVKAAWPSFA-RTIWKNHDRYLDTYLNPYPGYYFT--GDGAAKDKDG 517
Query: 395 YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLK 454
YI + GR DD +N+ G + S+ EIE + D + E A + + G + + FVVLK
Sbjct: 518 YIWILGRVDDVVNVSGHRLSTAEIEAAIIE-DPIVAECAVVGFNDDLTG-QAVAAFVVLK 575
Query: 455 KG---FTSQPDKLKMIFSK---AIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 505
T+ D+L+ I ++ + P L+ +V + P+T S K++RR+LR
Sbjct: 576 NKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILR 632
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 130/557 (23%), Positives = 212/557 (38%), Gaps = 104/557 (18%)
Query: 2 TYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
++EL E AN L +GD +A+ +P ++ L I AG + +
Sbjct: 75 NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134
Query: 60 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
+ +I RL++SKAK I D +V+ A P++ + + +
Sbjct: 135 STDILYRLQMSKAKAIVAGD-------------EVIQEVDTVASECPSLRIKLLVSEKSC 181
Query: 120 D--LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA 177
D L++K L+ + V I F+SGT+G PK SS+ A
Sbjct: 182 DGWLNFKKLLNEAS-----TTHHCVETGSQEASAIYFTSGTSGLPKMAE-HSYSSLGLKA 235
Query: 178 E---GWAHIDLKVGDVYCWPTNLGWV-------MGPVIL-----------FSSFLNGATL 216
+ GW L+ D+ ++ GW+ M P L F + TL
Sbjct: 236 KMDAGWT--GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTL 293
Query: 217 ALY-----QGSPL--------ERSFGKFVQDAGVTVLGT--VPSLVKAWRNTNCLEGLDW 261
+ Y G+P+ + S KF +G +P ++ WR GLD
Sbjct: 294 SSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQT---GLDI 350
Query: 262 TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA 321
+ TG T V + + K Y SC ++ +G++L P G
Sbjct: 351 RESYGQTETGLTCMVSKTMKI--KPGYMGTAASCYDVQIIDD--KGNVLPPGTEG----- 401
Query: 322 TMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCL 381
+ G+ +P +G+F Y+ N D RG
Sbjct: 402 ----------DIGIRVKPIRP----IGIFSGYVD------NPDKTAANIRGD-------F 434
Query: 382 RRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG 441
GD + GY GRADD +N G + E+E + +++ETA IS SP
Sbjct: 435 WLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALME-HPAVVETAVIS-SPDP 492
Query: 442 GGPEVLVIFVVLKKGFTSQ-PDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLL 500
EV+ FVVL F S P++L + ++S P ++ V P+T + K+
Sbjct: 493 VRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQ 552
Query: 501 RRVLRDQIKHELSVRSR 517
R LRD+ + ++S ++R
Sbjct: 553 RAKLRDK-EWKMSGKAR 568
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 128/521 (24%), Positives = 200/521 (38%), Gaps = 68/521 (13%)
Query: 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
MTY ++ A+ L + +KGD +A+ MP +V ++ G V V I A
Sbjct: 44 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103
Query: 60 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
A E++ L S +K ++ G P+ + A V IG D L E+
Sbjct: 104 APEVSFILSDSGSK------VVIYGAPSAPVIDAIRAQADPPGTVTDWIGAD---SLAER 154
Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 179
S +V+ N + I+++SGTTG PK + T S+ A
Sbjct: 155 LRSAAADEPAVECGGDDNLF------------IMYTSGTTGHPKGVVHTH-ESVHSAASS 201
Query: 180 WAH-IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVT 238
WA ID++ D P + V + S + G TL + + V++ V
Sbjct: 202 WASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEER-VC 260
Query: 239 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN-------AI 291
+ G VP+++ R LD R F + G + + A N A+
Sbjct: 261 IGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPM---PEALIKIYAAKNIEVVQGYAL 317
Query: 292 IESCGGTELSSAYIQGSLLQPQAF---GAFSTATMTAGLVILDECGVPYPDDQPCVGEVG 348
ESCGG L LL A G+ ATM + + + GV + GEV
Sbjct: 318 TESCGGGTL--------LLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHGE---GEVV 366
Query: 349 LFPLYLGASDRLLNADHEEVYFRGMPMYKGM--CLRRHGDIIKRTVGGYIIVQGRADDTM 406
+ SD LL +E + R R GDI + GY+ ++ R D +
Sbjct: 367 I------KSDILL----KEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMI 416
Query: 407 NLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKM 466
GG EIE V + E A I + G E+ VV + S+ ++
Sbjct: 417 ISGGENVYPAEIESVIIGV-PGVSEVAVIGLPDEKWG-EIAAAIVVADQNEVSEQQIVEY 474
Query: 467 IFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ 507
++ + KL KV + +P P + K+L+ VLR+Q
Sbjct: 475 CGTRLARYKLPK--KVIFAEAIPRNP---TGKILKTVLREQ 510
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 130/557 (23%), Positives = 212/557 (38%), Gaps = 104/557 (18%)
Query: 2 TYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
++EL E AN L +GD +A+ +P ++ L I AG + +
Sbjct: 75 NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134
Query: 60 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
+ +I RL++SKAK I D +V+ A P++ + + +
Sbjct: 135 STDILYRLQMSKAKAIVAGD-------------EVIQEVDTVASECPSLRIKLLVSEKSC 181
Query: 120 D--LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA 177
D L++K L+ + V I F+SGT+G PK SS+ A
Sbjct: 182 DGWLNFKKLLNEAS-----TTHHCVETGSQEASAIYFTSGTSGLPKMAE-HSYSSLGLKA 235
Query: 178 E---GWAHIDLKVGDVYCWPTNLGWV-------MGPVIL-----------FSSFLNGATL 216
+ GW L+ D+ ++ GW+ M P L F + TL
Sbjct: 236 KMDAGWT--GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTL 293
Query: 217 ALY-----QGSPL--------ERSFGKFVQDAGVTVLGT--VPSLVKAWRNTNCLEGLDW 261
+ Y G+P+ + S KF +G +P ++ WR GLD
Sbjct: 294 SSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQT---GLDI 350
Query: 262 TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA 321
+ TG T V + + K Y SC ++ +G++L P G
Sbjct: 351 RESYGQTETGLTCMVSKTMKI--KPGYMGTAASCYDVQIIDD--KGNVLPPGTEG----- 401
Query: 322 TMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCL 381
+ G+ +P +G+F Y+ N D RG
Sbjct: 402 ----------DIGIRVKPIRP----IGIFSGYVD------NPDKTAANIRGD-------F 434
Query: 382 RRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG 441
GD + GY GRADD +N G + E+E + +++ETA IS SP
Sbjct: 435 WLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALME-HPAVVETAVIS-SPDP 492
Query: 442 GGPEVLVIFVVLKKGFTSQ-PDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLL 500
EV+ FVVL F S P++L + ++S P ++ V P+T + K+
Sbjct: 493 VRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQ 552
Query: 501 RRVLRDQIKHELSVRSR 517
R LRD+ + ++S ++R
Sbjct: 553 RAKLRDK-EWKMSGKAR 568
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 95/367 (25%), Positives = 156/367 (42%), Gaps = 26/367 (7%)
Query: 147 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVYCWPTNL--GWVMG 202
D + L+SSG+TG+PK T +++ TAE +A L + DV L + +G
Sbjct: 183 DDIAFWLYSSGSTGKPKGTVHTH-ANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLG 241
Query: 203 PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT 262
+ F + + + + + F + V+ TV VP+L + L
Sbjct: 242 NGLTFPLSVGATAILMAERPTADAIFARLVEHRP-TVFYGVPTLYANMLVSPNLPARADV 300
Query: 263 KIRSFASTGETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSLLQPQAFGAFSTA 321
IR S GE + ++ A + I++ G TE+ ++ + +G
Sbjct: 301 AIRICTSAGEA--LPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVE-YGTTGRP 357
Query: 322 TMTAGLVILDECGVPYPDDQPCVGEVGLFPLYL-GASDRLLNADHEEVYFRGMPMYKGMC 380
+ + DE G PD GEVG LY+ G S ++ ++ E + + G
Sbjct: 358 VPGYEIELRDEAGHAVPD-----GEVG--DLYIKGPSAAVMYWNNRE---KSRATFLGEW 407
Query: 381 LRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPA 440
+R GD R G + GR+DD + + G S VE+E V Q D ++LE A + V
Sbjct: 408 IRS-GDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHD-AVLEAAVVGVD-- 463
Query: 441 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLL 500
GG FVVLK+ F + L ++ +L P + V + P+TA+ K+
Sbjct: 464 HGGLVKTRAFVVLKREFAPS-EILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQ 522
Query: 501 RRVLRDQ 507
R LR+Q
Sbjct: 523 RFKLREQ 529
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 377 KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAIS 436
KG R GD+ G++ Q R + + G + E+E + + E++ + A I
Sbjct: 413 KGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXK-HEAVXDVAVIG 471
Query: 437 VSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTAS 496
P EV F+VLK + + D+ +I + ++ +++ +V V+ V E PRTAS
Sbjct: 472 -KPDEEAGEVPKAFIVLKPEYRGKVDEEDII--EWVRERISGYKRVREVEFVEELPRTAS 528
Query: 497 NKLLRRVLRDQ 507
KLLRR+LR++
Sbjct: 529 GKLLRRLLREK 539
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 111/318 (34%), Gaps = 65/318 (20%)
Query: 133 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGD 189
HP ++ + +P D V S GTTG PK IP T S+R + E +
Sbjct: 171 HPAEDF-TATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE-ICQFTQQTRY 228
Query: 190 VYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKA 249
+ P + M FL G T+ L F ++ V V VP V
Sbjct: 229 LCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCF-PLIEKHQVNVTALVPPAVSL 287
Query: 250 WRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ--- 306
W +EG ++ S + GG LS+
Sbjct: 288 WLQA-LIEGESRAQLASLK-----------------------LLQVGGARLSATLAARIP 323
Query: 307 ---GSLLQPQAFGAFSTATMTAGLV-----------ILDECGVPY-PDDQPCVGEVGLFP 351
G LQ Q FG M GLV I+ G P PDD+ V + P
Sbjct: 324 AEIGCQLQ-QVFG------MAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNP 376
Query: 352 LYLGASDRLLNADHEEVYFRGM---PMYKGMCLRRHG-----DIIKRTVGGYIIVQGRAD 403
L G RL+ FRG P + +G D+I GYI VQGR
Sbjct: 377 LPQGEVGRLMT--RGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREK 434
Query: 404 DTMNLGGIKTSSVEIERV 421
D +N GG K ++ EIE +
Sbjct: 435 DQINRGGEKIAAEEIENL 452
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 69/162 (42%), Gaps = 18/162 (11%)
Query: 347 VGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTM 406
VGLF Y +R H+ Y GD+ GY+ GRADD +
Sbjct: 432 VGLFVHYGKDPERTEETWHDGYY-------------HTGDMAWMDEDGYLWFVGRADDII 478
Query: 407 NLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLK 465
G K E+E Q ++LE A V P G +V+ +VL K +T D LK
Sbjct: 479 KTSGYKVGPFEVESALIQH-PAVLECAITGVPDPVRG--QVIKATIVLTKDYTPS-DSLK 534
Query: 466 MIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ 507
+++ P +++ VPE P+T S K+ R +RD+
Sbjct: 535 NELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDK 576
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 119/309 (38%), Gaps = 35/309 (11%)
Query: 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
MTY ++ A+ L + +KGD +A+ MP +V ++ G V V I A
Sbjct: 30 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 89
Query: 60 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
A E++ L S +K ++ G P+ + A V IG D L E+
Sbjct: 90 APEVSFILSDSGSK------VVIYGAPSAPVIDAIRAQADPPGTVTDWIGAD---SLAER 140
Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 179
S +V+ N + I+++SGTTG PK + T S+ A
Sbjct: 141 LRSAAADEPAVECGGDDNLF------------IMYTSGTTGHPKGVVHTH-ESVHSAASS 187
Query: 180 WAH-IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVT 238
WA ID++ D P + V + S + G TL + + V++ V
Sbjct: 188 WASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEER-VC 246
Query: 239 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN-------AI 291
+ G VP+++ R LD R F + G + + A N A+
Sbjct: 247 IGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMP---EALIKIYAAKNIEVVQGYAL 303
Query: 292 IESCGGTEL 300
ESCGG L
Sbjct: 304 TESCGGGTL 312
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 95/405 (23%), Positives = 150/405 (37%), Gaps = 104/405 (25%)
Query: 149 VVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 208
V ++F+SG+TG PK + + ++ T G + +V+ + + W + LF
Sbjct: 216 VACVMFTSGSTGRPKGV-MSPHRALTGTYLGQDYAGFGPDEVFLQCSPVSWDAFGLELFG 274
Query: 209 SFLNGATLALYQGS---PLERSFGKFVQDAGVTVL------------------------- 240
+ L GA L G PLE G+ V GVT+L
Sbjct: 275 ALLFGARCVLQSGQNPDPLE--IGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAI 332
Query: 241 -----GTVPSLVKAWRNTNCLE-GLDWTKIRSFASTGETSNVDDDLW---------LSSK 285
+VP + KA R+ L G + S T + V DL L+ K
Sbjct: 333 TGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGK 392
Query: 286 AWY--NAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPC 343
Y + ++ L Y+ G+ L A G S +TA + D P
Sbjct: 393 RAYVLDDDLKPAANGALGELYVAGAGL---AHGYVSRPALTAERFVAD----------PF 439
Query: 344 VGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRAD 403
G G E +Y R GD+ +R G + GRAD
Sbjct: 440 AGPGG-----------------ERMY-------------RTGDLARRRADGVLEYVGRAD 469
Query: 404 DTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPD- 462
D + + G + E+E + AA+ + G + LV +VV ++ + PD
Sbjct: 470 DQVKIRGFRVEPGEVE--ARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERA-DAPPDA 526
Query: 463 -KLKMIFSKAIQSKLNPLFKVSLVKVVP--EFPRTASNKLLRRVL 504
+L+ ++A+ + + P V+ VP E PRT + KL RR L
Sbjct: 527 AELRRHVAEALPAYMVP------VECVPVDELPRTPNGKLDRRAL 565
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 6/130 (4%)
Query: 383 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 442
R GDI++ T GYI+V+GRA D +N GG K ++ E+E A ++ + A +S+
Sbjct: 410 RTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHL-LAHPAVHDAAMVSMPDQFL 468
Query: 443 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRR 502
G E +F++ + + + + + + P V+ V FP+T K+ ++
Sbjct: 469 G-ERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIP----DRVEFVESFPQTGVGKVSKK 523
Query: 503 VLRDQIKHEL 512
LR+ I +L
Sbjct: 524 ALREAISEKL 533
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Query: 383 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 442
R GDI++ T GYI+V+GRA D +N GG K ++ E+E A ++ + A +S
Sbjct: 410 RTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHL-LAHPAVHDAAXVSXPDQFL 468
Query: 443 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRR 502
G E +F++ + + + + + + P V+ V FP+T K+ ++
Sbjct: 469 G-ERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIP----DRVEFVESFPQTGVGKVSKK 523
Query: 503 VLRDQIKHEL 512
LR+ I +L
Sbjct: 524 ALREAISEKL 533
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 107/526 (20%), Positives = 200/526 (38%), Gaps = 62/526 (11%)
Query: 2 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
TY ++ VA+ L+ + +GD I + +P + V+ +L G ++ +
Sbjct: 51 TYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTP 110
Query: 61 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV----LGAAPLKAIVLPAIGNDVGIPL 116
E+A + S+AK + TQ + F S V + +AP D +
Sbjct: 111 AELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAP-----------DGCLHF 159
Query: 117 REQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT 176
E + ++ VD P D VV + +SSGTTG PK + T I
Sbjct: 160 SELTQADENEAPQVDISP------------DDVVALPYSSGTTGLPKGVMLTHKGLITSV 207
Query: 177 AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE-------RSFG 229
A+ +D ++Y ++ + P+ + + L G+P+ S
Sbjct: 208 AQ---QVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLL 264
Query: 230 KFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 289
++ V++ VP ++ + + L+ D + +R S G + + + +K
Sbjct: 265 GLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQA 324
Query: 290 AIIESCGGTELSSAYIQGSLLQPQAF----GAFSTATMTAGLVILD-ECGVPYPDDQPCV 344
+ + G TE + F GA T A + I+D E G P +QP
Sbjct: 325 RLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP-- 382
Query: 345 GEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADD 404
GE+ + D+++ + + K L IV R +
Sbjct: 383 GEICI------RGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVD-RLKE 435
Query: 405 TMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKL 464
+ G + + E+E + A I + A + + G EV V FVV + + D++
Sbjct: 436 LIKYKGFQVAPAELEALL-IAHPEISDAAVVGLKDEDAG-EVPVAFVVKSEKSQATEDEI 493
Query: 465 KMIFSKAIQSKLNPLF--KVSLVKVVPEFPRTASNKLLRRVLRDQI 508
K SK + +F ++ V + P+ S K+LR+ L++++
Sbjct: 494 KQYISKQV------IFYKRIKRVFFIEAIPKAPSGKILRKNLKEKL 533
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 96/391 (24%), Positives = 149/391 (38%), Gaps = 45/391 (11%)
Query: 141 PVYNPVDAVVNILFSSGTTGEPKAIPWTQ----LSSIRCT-AEGWAHIDLKVGDVYCWPT 195
PV P A + +++GTTG PK + ++ L S+ + +G A L DV
Sbjct: 170 PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA---LSEKDVVLPVV 226
Query: 196 NLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC 255
+ V + +++ L GA L S + GVT VP++ A +
Sbjct: 227 PMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLE 286
Query: 256 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQG-------S 308
G +R G S L + + + G TE S +Q S
Sbjct: 287 STGHRLKTLRRLVVGG--SAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLES 344
Query: 309 LLQPQAFGAFSTATMTAGLVIL---DECGVPYPDDQPCVGEVGLFPL-----YLGASDRL 360
L + + + + LV L DE G P P D +GEV L Y G +
Sbjct: 345 LSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEAT 404
Query: 361 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 420
+A + +FR GDI GY+ ++ R D + GG SSV++E
Sbjct: 405 RSALTPDGFFRT------------GDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLEN 452
Query: 421 VCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLN-PL 479
+ E A +++ L VV+ +G P++L KA +K P
Sbjct: 453 AL-MGHPKVKEAAVVAIPHPKWQERPLA--VVVPRGEKPTPEELNEHLLKAGFAKWQLPD 509
Query: 480 FKVSLVKVVPEFPRTASNKLLRRVLRDQIKH 510
V E PRT++ K L+R LR+Q K+
Sbjct: 510 AYV----FAEEIPRTSAGKFLKRALREQYKN 536
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 114/526 (21%), Positives = 200/526 (38%), Gaps = 65/526 (12%)
Query: 1 MTYKELREQVMLVANALDTMFS-KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
++Y+EL E+ +A L + KG +A+ ++ VI L ++ AG + +
Sbjct: 490 LSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLP 549
Query: 60 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
I+ L S A + T + + P L D EQ
Sbjct: 550 EDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFI-------------DDQTRFEEQ 596
Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 179
D +++D PN P Y I+++SGTTG+PK T ++I+ +
Sbjct: 597 ---ASDPATAID----PN--DPAY--------IMYTSGTTGKPKGNITTH-ANIQGLVKH 638
Query: 180 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL---ERSFGKFVQDAG 236
++ D + +N + ++S LN A L + L ER +Q+
Sbjct: 639 VDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQE-N 697
Query: 237 VTVLGTVPSLVKAWRNTNCLEGLDWTK-IRSFASTGETSNVDDDLWLSSKAWYNAIIESC 295
V V+ +L + G DW K +R GE ++V +I
Sbjct: 698 VNVMFATTALFNLLTDA----GEDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCY 753
Query: 296 GGTE---LSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPL 352
G TE ++A++ L + A + IL+E P G VG +
Sbjct: 754 GPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQP-----FGAVGELCI 808
Query: 353 Y-LGASDRLLN-ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 410
+G S +N AD + F P G L R GD+ + G I GR DD + + G
Sbjct: 809 SGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRG 868
Query: 411 IKTSSVEIERVCDQADESI-LETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFS 469
+ +E+E + Q E ++ A + G + ++V + +++ +K
Sbjct: 869 HR---IELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLSAE--DVKAHLK 923
Query: 470 KAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL----RDQIKHE 511
K + + + P + E P T + K+ +R+L +DQ+ E
Sbjct: 924 KQLPAYMVP----QTFTFLDELPLTTNGKVNKRLLPKPDQDQLAEE 965
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 108/533 (20%), Positives = 191/533 (35%), Gaps = 81/533 (15%)
Query: 12 LVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSK 71
+ AN ++ D + + +P V+ +LA G + F EIA + + S
Sbjct: 101 IAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASN 160
Query: 72 AKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVD 131
K I T+ + + PL + +V+ I ++ +P+ E L + + S
Sbjct: 161 TKLIITEARYVDKIK--PLQND-------DGVVIVCIDDNESVPIPEGCLRFTELTQST- 210
Query: 132 YHPRPNYYSPVYNPV----DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV 187
S V + V D VV + +SSGTTG PK + T + A+ +D +
Sbjct: 211 -----TEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQ---QVDGEN 262
Query: 188 GDVYCWPTNLGWVMGPV--------ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTV 239
++Y ++ + P+ I+ GA + + + + +Q VTV
Sbjct: 263 PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLL-ELIQRCKVTV 321
Query: 240 LGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE 299
VP +V A ++ E D + IR S + + +++K + + G TE
Sbjct: 322 APMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTE 381
Query: 300 LSSAYIQGSLLQPQAF----GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLG 355
+ F GA T A + I+D PD
Sbjct: 382 AGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD------PD---------------- 419
Query: 356 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY--------------IIVQGR 401
D L E+ RG + KG G+ + + R
Sbjct: 420 TGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDR 479
Query: 402 ADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP 461
+ + G + + E+E + I + A +++ G EV V FVV K
Sbjct: 480 LKELIKYKGFQVAPAELEALL-IGHPDITDVAVVAMKEEAAG-EVPVAFVVKSKDSELSE 537
Query: 462 DKLKMIFSKAI--QSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 512
D +K SK + ++N +F P+ S K+LR+ LR ++ + L
Sbjct: 538 DDVKQFVSKQVVFYKRINKVF------FTESIPKAPSGKILRKDLRAKLANGL 584
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 106/490 (21%), Positives = 176/490 (35%), Gaps = 111/490 (22%)
Query: 2 TYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAR 61
TYK+L E VAN + G AIA+ + ++ A I + I +G V I
Sbjct: 57 TYKKLNETANQVANLIIHASLHGRAIAVSLDRSLIAFAIIVGIXKSGNTYVPIEAGLPND 116
Query: 62 EIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDL 121
+ LR S+A F D G + P +KVL ++
Sbjct: 117 RKSFLLRDSRAAXAFVCDNNF-DGVELPPETKVLDT---------------------KNQ 154
Query: 122 SWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA 181
S+ + LS+ D N Y P + +L++SG+TG PK + ++ ++ ++ W
Sbjct: 155 SFIENLSTQDTSDILNNY-----PENLDAYLLYTSGSTGTPKGVRVSR-HNLSSFSDAWG 208
Query: 182 HI-------DLKVG-------------DVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 221
+ L++G DV+ L W G + G L+
Sbjct: 209 KLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEXFLAWRFGLCA-----VTGERLSXLDD 263
Query: 222 SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSN-VDDDL 280
P R+F ++ GVT G VPSL+ + L D + GE +
Sbjct: 264 LP--RTF----RELGVTHAGIVPSLL----DQTGLVPEDAPHLVYLGVGGEKXTPRTQQI 313
Query: 281 WLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDD 340
W SS A++ G TE+ T +AG ++ D D
Sbjct: 314 WSSSDRV--ALVNVYGPTEV-------------------TIGCSAGRILPDS-------D 345
Query: 341 QPCV----GEVGLFPLYLGASDRLLNADHEEVYFRG---------MPMYKGMC------L 381
C+ G+ L G+++ + E+ G P KG C
Sbjct: 346 TRCIGHPLGDSVAHVLAPGSNEHVKKGXAGELVIEGSLVANGYLNRPDAKGFCDINGRKX 405
Query: 382 RRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG 441
R GDI++ I+ GR D+ + + G + E+ V + ++ + ++ G
Sbjct: 406 YRTGDIVRXDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPG 465
Query: 442 GGPEVLVIFV 451
+ LV FV
Sbjct: 466 TSKQFLVSFV 475
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 75/184 (40%), Gaps = 20/184 (10%)
Query: 1 MTYKEL-REQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
++Y EL R L + KGD + +P I++ A++ AG VV++ S
Sbjct: 56 LSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHR 115
Query: 60 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
E+ ++ + K +L G R+ ++S L + L ++ + L Q
Sbjct: 116 QYELNAFIKQIQPK-------LLIGSRQHEVFSNNQFIDSLHDVNLSP---EIILMLNHQ 165
Query: 120 --DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLS---SIR 174
D D++ + P + P D V S G+TG PK IP T S+R
Sbjct: 166 ATDFGLLDWIET----PAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVR 221
Query: 175 CTAE 178
+AE
Sbjct: 222 ASAE 225
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 385 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 444
GD+++RT G + V GR D +N GG K +S EIE++ E ++ A +++ G
Sbjct: 421 GDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPE-VMHAALVAIVDEQFG- 478
Query: 445 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRV 503
E F+V + P+ ++ + + +K+ +K++ P TA K+ ++
Sbjct: 479 EKSCAFIV-----SRNPELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQ 533
Query: 504 LR 505
LR
Sbjct: 534 LR 535
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 121/522 (23%), Positives = 194/522 (37%), Gaps = 64/522 (12%)
Query: 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
++Y EL + VAN L GD +A +V A+++YLA + AG V + + ++
Sbjct: 29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 60 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
E+ D+ + K++ P K + AI VG +
Sbjct: 89 LHEL---------------DYFITDAE-----PKIVVCDPSKRDGIAAIAAKVGATVETL 128
Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKA--IPWTQLSSIRCT- 176
+ L+ + + + D + IL++SGTTG K + L+S T
Sbjct: 129 GPDGRGSLTDAAAGASEAFAT-IDRGADDLAAILYTSGTTGRSKGAXLSHDNLASNSLTL 187
Query: 177 AEGWAHI--DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQ- 233
+ W D+ + + + T+ +V V LF+ G+ + L + P K +
Sbjct: 188 VDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFA---RGSXIFLPKFDP-----DKILDL 239
Query: 234 DAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 293
A TVL VP+ + L R F S D S+K + A++E
Sbjct: 240 XARATVLXGVPTFYTRLLQSPRLTKETTGHXRLFISGSAPLLADTHREWSAKTGH-AVLE 298
Query: 294 SCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPL 352
G TE ++ + GA A + D E G P EV +
Sbjct: 299 RYGXTE-TNXNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGXIEVKGPNV 357
Query: 353 YLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG-----GYIIVQGRADDTMN 407
+ G Y+R P R G I +G GY+ + GR D +
Sbjct: 358 FKG-------------YWR-XPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVI 403
Query: 408 LGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMI 467
GG EIE D A ++E+A I V A G V + VV KG T D+ +++
Sbjct: 404 TGGFNVYPKEIESEID-AXPGVVESAVIGVPHADFGEGVTAV-VVRDKGATI--DEAQVL 459
Query: 468 FSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIK 509
+ +L V V + PR K+ + VLR+ K
Sbjct: 460 --HGLDGQLAKFKXPKKVIFVDDLPRNTXGKVQKNVLRETYK 499
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 98/488 (20%), Positives = 181/488 (37%), Gaps = 58/488 (11%)
Query: 1 MTYKELREQVMLVANALDTMFSKGDA-IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
+TYK+L+E +A+ + + + + I + M +I +L + AG+ + + S
Sbjct: 27 ITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDLSIP 86
Query: 60 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
A + S AK + + + L +++ LK I GN P E
Sbjct: 87 ADRVQRIAENSGAKLLLSATAVTVTD----LPVRIVSEDNLKDIFFTHKGN---TPNPEH 139
Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 179
+ + N+Y I+++SG+TG PK + T + T
Sbjct: 140 AVKGDE-----------NFY------------IIYTSGSTGNPKGVQITYNCLVSFTKWA 176
Query: 180 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKF--VQDAGV 237
+L+ G V+ + + + ++ S + G TL + R F ++ + +
Sbjct: 177 VEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDI 236
Query: 238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGG 297
V + PS + +++F GE + L + I+ + G
Sbjct: 237 QVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGP 296
Query: 298 TELSSAYIQGSLLQPQAFGAFST-----ATMTAGLVILDECGVPYPDDQPCVGEVGLFPL 352
TE + A + G + + + + L+I+ E G PD + GE+ +
Sbjct: 297 TEATVA-VTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEK--GEI----V 349
Query: 353 YLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 412
+G S + E+ + M G + GD G + GR D + L G +
Sbjct: 350 IVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGD-AGYVENGLLFYNGRLDFQIKLHGYR 408
Query: 413 TSSVEIE---RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFS 469
EIE R C S +E A I P G + + V+ G S + K+ +
Sbjct: 409 MELEEIEHHLRAC-----SYVEGAVI--VPIKKGEKYDYLLAVVVPGEHSFEKEFKL--T 459
Query: 470 KAIQSKLN 477
AI+ +LN
Sbjct: 460 SAIKKELN 467
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 95/390 (24%), Positives = 152/390 (38%), Gaps = 45/390 (11%)
Query: 137 NYYSPVYNPVDAVVN---ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVY 191
+Y P+ +P I ++SGTTG PKA Q ++ + L+ G +V
Sbjct: 140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVV 199
Query: 192 CWPTNLGWVMG--PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKA 249
L V+G V++ + L+G + + + P++ + VQ VT L P+ + A
Sbjct: 200 LGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL--QLVQQEQVTSLFATPTHLDA 257
Query: 250 WRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE-LSSAYIQ 306
G L +R G T D L + + + G TE ++S Y++
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMP-DAVLETVHQHLPGEKVNAYGTTEAMNSLYMR 316
Query: 307 ----GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLN 362
G+ + P F + G+ D+ GE G L + ASD
Sbjct: 317 QPKTGTEMAPGFFSEVRIVRIGGGV-----------DEIVANGEEG--ELIVAASDSAF- 362
Query: 363 ADHEEVYFRGMPMYKGMCLR----RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 418
V + P L+ R D+ T G + + GR DD + GG EI
Sbjct: 363 -----VGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEI 417
Query: 419 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP 478
ERV A + E I ++ G V VV + G T D L F ++ S+L
Sbjct: 418 ERVLGTA-PGVTEVVVIGLADQRWGQSVTAC-VVPRLGETLSADALD-TFCRS--SELAD 472
Query: 479 LFKVSLVKVVPEFPRTASNKLLRRVLRDQI 508
+ ++ + P+ A NK+LRR L Q+
Sbjct: 473 FKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 98/488 (20%), Positives = 181/488 (37%), Gaps = 58/488 (11%)
Query: 1 MTYKELREQVMLVANALDTMFSKGDA-IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
+TYK+L+E +A+ + + + + I + M +I +L + AG+ + + S
Sbjct: 27 ITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDLSIP 86
Query: 60 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
A + S AK + + + L +++ LK I GN P E
Sbjct: 87 ADRVQRIAENSGAKLLLSATAVTVTD----LPVRIVSEDNLKDIFFTHKGN---TPNPEH 139
Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 179
+ + N+Y I+++SG+TG PK + T + T
Sbjct: 140 AVKGDE-----------NFY------------IIYTSGSTGNPKGVQITYNCLVSFTKWA 176
Query: 180 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKF--VQDAGV 237
+L+ G V+ + + + ++ S + G TL + R F ++ + +
Sbjct: 177 VEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDI 236
Query: 238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGG 297
V + PS + +++F GE + L + I+ + G
Sbjct: 237 QVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGP 296
Query: 298 TELSSAYIQGSLLQPQAFGAFST-----ATMTAGLVILDECGVPYPDDQPCVGEVGLFPL 352
TE + A + G + + + + L+I+ E G PD + GE+ +
Sbjct: 297 TEATVA-VTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEK--GEI----V 349
Query: 353 YLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 412
+G S + E+ + M G + GD G + GR D + L G +
Sbjct: 350 IVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGD-AGYVENGLLFYNGRLDFQIKLHGYR 408
Query: 413 TSSVEIE---RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFS 469
EIE R C S +E A I P G + + V+ G S + K+ +
Sbjct: 409 MELEEIEHHLRAC-----SYVEGAVI--VPIKKGEKYDYLLAVVVPGEHSFEKEFKL--T 459
Query: 470 KAIQSKLN 477
AI+ +LN
Sbjct: 460 SAIKKELN 467
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 95/390 (24%), Positives = 151/390 (38%), Gaps = 45/390 (11%)
Query: 137 NYYSPVYNPVDAVVN---ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVY 191
+Y P+ +P I ++SGTTG PKA Q ++ + L+ G +V
Sbjct: 140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVV 199
Query: 192 CWPTNLGWVMG--PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKA 249
L V+G V++ + L+G + + + P++ + VQ VT L P+ + A
Sbjct: 200 LGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL--QLVQQEQVTSLFATPTHLDA 257
Query: 250 WRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE-LSSAYIQ 306
G L +R G T D L + + G TE ++S Y++
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMP-DAVLETVHQHLPGEKVNGYGTTEAMNSLYMR 316
Query: 307 ----GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLN 362
G+ + P F + G+ D+ GE G L + ASD
Sbjct: 317 QPKTGTEMAPGFFSEVRIVRIGGGV-----------DEIVANGEEG--ELIVAASDSAF- 362
Query: 363 ADHEEVYFRGMPMYKGMCLR----RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 418
V + P L+ R D+ T G + + GR DD + GG EI
Sbjct: 363 -----VGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEI 417
Query: 419 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP 478
ERV A + E I ++ G V VV + G T D L F ++ S+L
Sbjct: 418 ERVLGTA-PGVTEVVVIGLADQRWGQSVTAC-VVPRLGETLSADALD-TFCRS--SELAD 472
Query: 479 LFKVSLVKVVPEFPRTASNKLLRRVLRDQI 508
+ ++ + P+ A NK+LRR L Q+
Sbjct: 473 FKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 12/143 (8%)
Query: 369 YFRGMPMYKGMCLRRHGDIIKRTVG-----GYIIVQGRADDTMNLGGIKTSSVEIERVCD 423
Y+R MP R G I +G GY+ + GR D + GG EIE D
Sbjct: 361 YWR-MPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEID 419
Query: 424 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVS 483
A ++E+A I V A G E + FVVL + F P + +++ + +L
Sbjct: 420 -AMPGVVESAVIGVPHADFG-EGVTAFVVLXREFA--PSEAQVL--HGLDGQLAXFXMPX 473
Query: 484 LVKVVPEFPRTASNKLLRRVLRD 506
V V + PR + VLR+
Sbjct: 474 XVIFVDDLPRNTMGAVQXNVLRE 496
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
++Y EL + VAN L GD +A +V A+++YLA + AG V + + ++
Sbjct: 29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 60 AREI 63
E+
Sbjct: 89 LHEL 92
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 95/390 (24%), Positives = 151/390 (38%), Gaps = 45/390 (11%)
Query: 137 NYYSPVYNPVDAVVN---ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVY 191
+Y P+ +P I ++SGTTG PKA Q ++ + L+ G +V
Sbjct: 140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVV 199
Query: 192 CWPTNLGWVMG--PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKA 249
L V+G V++ + L+G + + + P++ + VQ VT L P+ + A
Sbjct: 200 LGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL--QLVQQEQVTSLFATPTHLDA 257
Query: 250 WRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE-LSSAYIQ 306
G L +R G T D L + + G TE ++S Y++
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMP-DAVLETVHQHLPGEKVNIYGTTEAMNSLYMR 316
Query: 307 ----GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLN 362
G+ + P F + G+ D+ GE G L + ASD
Sbjct: 317 QPKTGTEMAPGFFSEVRIVRIGGGV-----------DEIVANGEEG--ELIVAASDSAF- 362
Query: 363 ADHEEVYFRGMPMYKGMCLR----RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 418
V + P L+ R D+ T G + + GR DD + GG EI
Sbjct: 363 -----VGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEI 417
Query: 419 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP 478
ERV A + E I ++ G V VV + G T D L F ++ S+L
Sbjct: 418 ERVLGTA-PGVTEVVVIGLADQRWGQSVTAC-VVPRLGETLSADALDT-FCRS--SELAD 472
Query: 479 LFKVSLVKVVPEFPRTASNKLLRRVLRDQI 508
+ ++ + P+ A NK+LRR L Q+
Sbjct: 473 FKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 95/390 (24%), Positives = 151/390 (38%), Gaps = 45/390 (11%)
Query: 137 NYYSPVYNPVDAVVN---ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVY 191
+Y P+ +P I ++SGTTG PKA Q ++ + L+ G +V
Sbjct: 140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVV 199
Query: 192 CWPTNLGWVMG--PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKA 249
L V+G V++ + L+G + + + P++ + VQ VT L P+ + A
Sbjct: 200 LGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDAL--QLVQQEQVTSLFATPTHLDA 257
Query: 250 WRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE-LSSAYIQ 306
G L +R G T D L + + G TE ++S Y++
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMP-DAVLETVHQHLPGEKVNIYGTTEAMNSLYMR 316
Query: 307 ----GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLN 362
G+ + P F + G+ D+ GE G L + ASD
Sbjct: 317 QPKTGTEMAPGFFSEVRIVRIGGGV-----------DEIVANGEEG--ELIVAASDSAF- 362
Query: 363 ADHEEVYFRGMPMYKGMCLR----RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 418
V + P L+ R D+ T G + + GR DD + GG EI
Sbjct: 363 -----VGYLNQPEATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEI 417
Query: 419 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP 478
ERV A + E I ++ G V VV + G T D L F ++ S+L
Sbjct: 418 ERVLGTA-PGVTEVVVIGLADQRWGQSVTAC-VVPRLGETLSADALDT-FCRS--SELAD 472
Query: 479 LFKVSLVKVVPEFPRTASNKLLRRVLRDQI 508
+ ++ + P+ A NK+LRR L Q+
Sbjct: 473 FKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 57/143 (39%), Gaps = 9/143 (6%)
Query: 369 YFRGMPMYKGMCLRRHGDIIKRTVG-----GYIIVQGRADDTMNLGGIKTSSVEIERVCD 423
Y+R MP R G I +G GY+ + GR D + GG EIE D
Sbjct: 361 YWR-MPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEID 419
Query: 424 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVS 483
A ++E+A I V A G E + FVVL + F + L + +L
Sbjct: 420 -AMPGVVESAVIGVPHADFG-EGVTAFVVLXREFAPS-EILAEELXAFVXDRLAXFXMPX 476
Query: 484 LVKVVPEFPRTASNKLLRRVLRD 506
V V + PR + VLR+
Sbjct: 477 XVIFVDDLPRNTMGAVQXNVLRE 499
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
++Y EL + VAN L GD +A +V A+++YLA + AG V + + ++
Sbjct: 29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 60 AREI 63
E+
Sbjct: 89 LHEL 92
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 5/126 (3%)
Query: 383 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 442
R D+ T G + + GR DD + GG EIERV A + E I ++
Sbjct: 382 RTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTA-PGVTEVVVIGLADQRW 440
Query: 443 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRR 502
G V VV + G T D L F ++ S+L + ++ + P+ A NK+LRR
Sbjct: 441 GQSVTAC-VVPRLGETLSADALDT-FCRS--SELADFKRPKRYFILDQLPKNALNKVLRR 496
Query: 503 VLRDQI 508
L Q+
Sbjct: 497 QLVQQV 502
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 150/390 (38%), Gaps = 45/390 (11%)
Query: 137 NYYSPVYNPVDAVVN---ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVY 191
+Y P+ +P I ++SGTTG PKA Q ++ + L+ G +V
Sbjct: 140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVV 199
Query: 192 CWPTNLGWVMG--PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKA 249
L V+G V++ + L+G + + + P++ + VQ VT L P+ + A
Sbjct: 200 LGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL--QLVQQEQVTSLFATPTHLDA 257
Query: 250 WRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE-LSSAYIQ 306
G L +R G T D L + + G TE ++S Y++
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMP-DAVLETVHQHLPGEKVNIYGTTEAMNSLYMR 316
Query: 307 ----GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLN 362
G+ + P F + G+ D+ GE G L + ASD
Sbjct: 317 QPKTGTEMAPGFFSEVRIVRIGGGV-----------DEIVANGEEG--ELIVAASDSAF- 362
Query: 363 ADHEEVYFRGMPMYKGMCLR----RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 418
V + P L+ R D+ T G + + GR D + GG EI
Sbjct: 363 -----VGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEI 417
Query: 419 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP 478
ERV A + E I ++ G V VV + G T D L F ++ S+L
Sbjct: 418 ERVLGTAP-GVTEVVVIGLADQRWGQSVTAC-VVPRLGETLSADALDT-FCRS--SELAD 472
Query: 479 LFKVSLVKVVPEFPRTASNKLLRRVLRDQI 508
+ ++ + P+ A NK+LRR L Q+
Sbjct: 473 FKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 12/110 (10%)
Query: 370 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESI 429
F+G P Y GDI T ++ GR D + G + +E+E V Q ++S
Sbjct: 376 FKGQPAY------HTGDIGSLTEDNILLYGGRLDFQIKYAGYR---IELEDVSQQLNQSP 426
Query: 430 LETAAISVSPAGGGPEV--LVIFVVLKKGFTSQPDKLKMIFSKAIQSKLN 477
+ +A++V +V L+ ++V+K G + D+ ++ +KAI++ +
Sbjct: 427 MVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDR-ELELTKAIKASVK 475
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 149 VVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 208
V ++F+SG+TG PK + + ++ T G + +V+ + + W + LF
Sbjct: 216 VACVMFTSGSTGRPKGV-MSPHRALTGTYLGQDYAGFGPDEVFLQCSPVSWDAFGLELFG 274
Query: 209 SFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSL 246
+ L GA L G PLE G+ V GVT+L SL
Sbjct: 275 ALLFGARCVLQSGQNPDPLE--IGELVARHGVTMLQLSASL 313
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 3/144 (2%)
Query: 131 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDV 190
D P P +P D + ++++SGTTG PK +P + + A + D D
Sbjct: 160 DAEPGPVTGAPGPGAED-MAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDR 218
Query: 191 YCWPTNLGWVMGPVILFSSFLNGATLAL--YQGSPLERSFGKFVQDAGVTVLGTVPSLVK 248
+ +L + ++ +F GA L + + + + + D GVTV+ P+
Sbjct: 219 WLLFHSLSFDFSVWEIWGAFSTGAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFL 278
Query: 249 AWRNTNCLEGLDWTKIRSFASTGE 272
A G D + +R GE
Sbjct: 279 ALTEAAVRGGRDVSGLRYVIFGGE 302
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 112/540 (20%), Positives = 203/540 (37%), Gaps = 85/540 (15%)
Query: 1 MTYKELREQVMLVANALDTMFS--KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF 58
+TY+EL EQ A A+ S K I + M ++ +L + AG+ + + S
Sbjct: 27 LTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVDLSI 86
Query: 59 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLRE 118
+ IA + S A+ ++ AA L + A+G +
Sbjct: 87 PSERIAKIIESSGAE-------------------LLIHAAGLS---IDAVGQQI------ 118
Query: 119 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA- 177
Q +S ++ L + + + + I+++SG+TG PK + Q+S+ +
Sbjct: 119 QTVSAEELLENEGGSVSQDQWVKEHE----TFYIIYTSGSTGNPKGV---QISAANLQSF 171
Query: 178 EGWAHIDLKV--GDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKF--VQ 233
W D V G ++ + + + L+ +G TL + + F ++
Sbjct: 172 TDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELK 231
Query: 234 DAGVTVLGTVPSLVKAWRNTNCLEGLDWTK-----IRSFASTGETSNVDDDLWLSSKAWY 288
+G+ V + PS V+ CL +++ +F GE V L +
Sbjct: 232 KSGLNVWTSTPSFVQM-----CLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPK 286
Query: 289 NAIIESCGGTE----LSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCV 344
I + G TE ++S I ++ A + I+DE G P P+
Sbjct: 287 AKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPE----- 341
Query: 345 GEVGLFPL--------YLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI 396
GE G + YLG + E+ +F ++G R GD G I
Sbjct: 342 GEKGEIVIAGPSVSRGYLGEPELT-----EKAFFS----HEGQWAYRTGD-AGFIQDGQI 391
Query: 397 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG 456
QGR D + L G + EIE Q+ + + I P G E L+ +V ++
Sbjct: 392 FCQGRLDFQIKLHGYRMELEEIEFHVRQS-QYVRSAVVIPYQP-NGTVEYLIAAIVPEEH 449
Query: 457 FTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRS 516
+ +L K + + L P + + + + + +N ++ R +I E+ VRS
Sbjct: 450 EFEKEFQLTSAIKKELAASL-PAYMIPRKFIYQDHIQMTANG---KIDRKRIGEEVLVRS 505
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 12/168 (7%)
Query: 2 TYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAR 61
TY+ L + L+A L + ID +++++I+ A LA + I
Sbjct: 28 TYQNLYCEASLLAKRLKAYQQSRVGLYIDN--SIQSIILIHACWLANIEIAMINTRLTPN 85
Query: 62 EIATRLRVSKAKGIF-TQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 120
E+ ++R + IF T LRG + L + L + N +GI + D
Sbjct: 86 EMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGL--LDNTMGI---QYD 140
Query: 121 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWT 168
S + + V N + +N +D + +I+F+SGTTG KA+P T
Sbjct: 141 TSNE---TVVPKESPSNILNTSFN-LDDIASIMFTSGTTGPQKAVPQT 184
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 58/143 (40%), Gaps = 12/143 (8%)
Query: 369 YFRGMPMYKGMCLRRHGDIIKRTVG-----GYIIVQGRADDTMNLGGIKTSSVEIERVCD 423
Y+R MP R G I +G GY+ + GR D + GG EIE D
Sbjct: 361 YWR-MPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEID 419
Query: 424 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVS 483
A ++E+A I V A G V + VV G T D+ +++ + +L
Sbjct: 420 -AMPGVVESAVIGVPHADFGEGVTAV-VVRDXGATI--DEAQVL--HGLDGQLAXFXMPX 473
Query: 484 LVKVVPEFPRTASNKLLRRVLRD 506
V V + PR + VLR+
Sbjct: 474 XVIFVDDLPRNTMGAVQXNVLRE 496
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
++Y EL + VAN L GD +A +V A+++YLA + AG V + + ++
Sbjct: 29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 60 AREI 63
E+
Sbjct: 89 LHEL 92
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 146 VDAVVNILFSSGTTGEPKAIPWTQLSSIR-CTAEGWAHIDLKVGDVYCWPTNLGWVMGPV 204
D + I FSSGTTG PKAI T R C + + ++ + P L + +
Sbjct: 163 ADQIAYINFSSGTTGRPKAIACTHAGITRLCLGQSFLAFAPQMRFLVNSP--LSFDAATL 220
Query: 205 ILFSSFLNGATLALYQGSPLE 225
++ + LNG L PL+
Sbjct: 221 EIWGALLNGGCCVLNDLGPLD 241
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,170,612
Number of Sequences: 62578
Number of extensions: 663645
Number of successful extensions: 1370
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1252
Number of HSP's gapped (non-prelim): 76
length of query: 518
length of database: 14,973,337
effective HSP length: 103
effective length of query: 415
effective length of database: 8,527,803
effective search space: 3539038245
effective search space used: 3539038245
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)