Query 010114
Match_columns 518
No_of_seqs 134 out of 1283
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 20:12:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 3.2E-75 1.1E-79 601.7 39.9 474 1-510 50-535 (536)
2 4fuq_A Malonyl COA synthetase; 100.0 1.3E-74 4.3E-79 592.1 40.4 470 1-512 29-502 (503)
3 1pg4_A Acetyl-COA synthetase; 100.0 2.8E-74 9.6E-79 606.3 42.6 495 1-512 108-623 (652)
4 3g7s_A Long-chain-fatty-acid-- 100.0 2.1E-74 7.3E-79 597.2 38.4 481 1-514 53-546 (549)
5 2d1s_A Luciferase, luciferin 4 100.0 5.9E-74 2E-78 593.0 41.6 484 1-514 53-547 (548)
6 3etc_A AMP-binding protein; ad 100.0 1.5E-73 5.2E-78 592.7 42.4 482 1-511 87-580 (580)
7 3r44_A Fatty acyl COA syntheta 100.0 7.2E-74 2.5E-78 588.6 37.0 470 1-513 44-516 (517)
8 3e7w_A D-alanine--poly(phospho 100.0 6.2E-73 2.1E-77 581.4 42.6 471 1-513 27-506 (511)
9 1ry2_A Acetyl-coenzyme A synth 100.0 2.2E-73 7.6E-78 599.6 39.9 495 1-511 114-638 (663)
10 3fce_A D-alanine--poly(phospho 100.0 7.6E-74 2.6E-78 588.6 35.5 474 1-514 27-508 (512)
11 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.4E-73 4.7E-78 589.4 37.3 478 1-514 51-535 (539)
12 1v25_A Long-chain-fatty-acid-C 100.0 1.3E-73 4.3E-78 590.0 34.8 477 1-514 48-540 (541)
13 3rix_A Luciferase, luciferin 4 100.0 5.3E-74 1.8E-78 594.4 31.4 486 1-514 51-545 (550)
14 1t5h_X 4-chlorobenzoyl COA lig 100.0 4.1E-72 1.4E-76 574.4 43.3 460 1-509 30-503 (504)
15 3c5e_A Acyl-coenzyme A synthet 100.0 2.6E-71 8.8E-76 575.2 44.1 475 1-510 74-562 (570)
16 3l8c_A D-alanine--poly(phospho 100.0 2.3E-72 7.9E-77 579.1 34.8 474 1-514 30-516 (521)
17 3o83_A Peptide arylation enzym 100.0 5.6E-73 1.9E-77 585.5 28.0 480 1-511 56-541 (544)
18 1amu_A GRSA, gramicidin synthe 100.0 1.6E-71 5.4E-76 575.9 38.0 458 1-509 65-528 (563)
19 2v7b_A Benzoate-coenzyme A lig 100.0 7.8E-71 2.7E-75 568.5 41.8 474 1-506 49-528 (529)
20 4gr5_A Non-ribosomal peptide s 100.0 2.8E-72 9.6E-77 583.6 31.2 459 1-507 101-568 (570)
21 3ivr_A Putative long-chain-fat 100.0 7.5E-72 2.6E-76 573.4 29.3 469 1-513 32-504 (509)
22 3rg2_A Enterobactin synthase c 100.0 2.2E-70 7.4E-75 574.4 40.3 477 1-512 51-536 (617)
23 4dg8_A PA1221; ANL superfamily 100.0 1.2E-70 4.1E-75 574.0 37.7 455 1-513 53-516 (620)
24 3tsy_A Fusion protein 4-coumar 100.0 3.8E-71 1.3E-75 609.4 33.6 485 1-513 89-585 (979)
25 3ipl_A 2-succinylbenzoate--COA 100.0 3.2E-69 1.1E-73 553.0 38.3 470 1-511 27-498 (501)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 6.8E-70 2.3E-74 557.1 32.1 446 1-506 49-504 (505)
27 3kxw_A Saframycin MX1 syntheta 100.0 6.5E-68 2.2E-72 554.8 34.6 475 1-511 41-568 (590)
28 2vsq_A Surfactin synthetase su 100.0 5.7E-68 1.9E-72 598.1 35.7 463 1-509 490-959 (1304)
29 3ite_A SIDN siderophore synthe 100.0 1.5E-68 5.1E-73 555.6 28.4 467 1-511 56-544 (562)
30 3gqw_A Fatty acid AMP ligase; 100.0 1.7E-66 5.9E-71 542.8 36.0 467 1-515 50-568 (576)
31 4gs5_A Acyl-COA synthetase (AM 100.0 2.3E-54 7.8E-59 421.3 23.7 317 147-512 37-356 (358)
32 3t5a_A Long-chain-fatty-acid-- 100.0 3.3E-52 1.1E-56 425.0 22.9 368 1-401 59-480 (480)
33 3qov_A Phenylacetate-coenzyme 100.0 1.2E-48 4.2E-53 393.1 22.4 323 144-502 82-429 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 4E-47 1.4E-51 382.8 21.2 327 144-504 89-438 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 8.6E-47 2.9E-51 379.7 21.6 328 144-503 87-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 9.5E-31 3.2E-35 256.8 17.3 237 144-411 88-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.6 1.8E-15 6.3E-20 119.4 7.4 96 400-501 1-101 (109)
38 3gxs_A Phenylacetate-coenzyme 99.6 5.6E-15 1.9E-19 116.4 7.1 96 400-502 1-102 (109)
39 4eql_A 4-substituted benzoates 98.9 2.3E-08 7.7E-13 100.7 14.3 144 261-436 296-465 (581)
40 4epl_A Jasmonic acid-amido syn 98.9 3E-08 1E-12 99.6 14.7 163 243-436 276-472 (581)
41 4b2g_A GH3-1 auxin conjugating 98.9 5E-08 1.7E-12 98.4 16.3 55 382-436 412-477 (609)
42 2y27_A Phenylacetate-coenzyme 87.3 2.8 9.6E-05 40.8 10.2 79 2-81 111-192 (437)
43 2y4o_A Phenylacetate-coenzyme 86.4 3.1 0.00011 40.5 10.0 79 2-81 113-194 (443)
44 3qov_A Phenylacetate-coenzyme 86.0 3.1 0.00011 40.5 9.6 80 2-82 107-189 (436)
45 3g7s_A Long-chain-fatty-acid-- 74.5 20 0.00069 35.9 11.3 103 146-251 33-139 (549)
46 3ivr_A Putative long-chain-fat 70.3 18 0.00061 35.8 9.7 95 146-250 20-117 (509)
47 3ni2_A 4-coumarate:COA ligase; 69.0 16 0.00056 36.4 9.1 98 145-250 35-135 (536)
48 1t5h_X 4-chlorobenzoyl COA lig 66.9 28 0.00094 34.4 10.2 97 146-250 16-117 (504)
49 3t5a_A Long-chain-fatty-acid-- 65.7 36 0.0012 33.1 10.8 107 145-253 37-149 (480)
50 3c5e_A Acyl-coenzyme A synthet 64.4 36 0.0012 34.2 10.6 102 145-251 56-161 (570)
51 3vc3_A Beta-cyanoalnine syntha 63.9 29 0.00098 32.4 9.0 69 11-79 72-141 (344)
52 1v25_A Long-chain-fatty-acid-C 63.5 22 0.00075 35.5 8.8 100 146-251 32-134 (541)
53 3rix_A Luciferase, luciferin 4 63.4 17 0.00058 36.4 7.9 85 166-251 50-137 (550)
54 3hgu_A EHPF; phenazine, antibi 63.4 19 0.00066 33.8 7.9 79 2-82 112-216 (369)
55 1ry2_A Acetyl-coenzyme A synth 59.7 30 0.001 35.6 9.1 96 146-245 96-195 (663)
56 1pg4_A Acetyl-COA synthetase; 59.4 31 0.0011 35.4 9.2 95 146-244 90-187 (652)
57 2v7b_A Benzoate-coenzyme A lig 59.2 25 0.00084 35.0 8.2 84 166-250 48-134 (529)
58 3etc_A AMP-binding protein; ad 59.2 34 0.0011 34.6 9.3 96 145-245 69-167 (580)
59 3tbh_A O-acetyl serine sulfhyd 58.3 41 0.0014 31.1 9.0 67 13-79 59-126 (334)
60 2d1s_A Luciferase, luciferin 4 57.9 25 0.00087 35.1 8.1 84 166-250 52-138 (548)
61 3r44_A Fatty acyl COA syntheta 56.1 32 0.0011 34.0 8.4 97 146-250 30-129 (517)
62 4fuq_A Malonyl COA synthetase; 54.3 33 0.0011 33.8 8.1 80 166-246 28-110 (503)
63 3ezx_A MMCP 1, monomethylamine 53.1 52 0.0018 28.2 8.1 90 190-281 95-194 (215)
64 3tsy_A Fusion protein 4-coumar 52.8 41 0.0014 36.5 9.2 96 145-248 74-172 (979)
65 3kxw_A Saframycin MX1 syntheta 52.8 82 0.0028 31.6 11.0 101 145-251 24-130 (590)
66 1amu_A GRSA, gramicidin synthe 52.4 42 0.0014 33.7 8.6 84 166-250 64-150 (563)
67 3ipl_A 2-succinylbenzoate--COA 50.6 37 0.0013 33.4 7.8 79 166-245 26-104 (501)
68 4gr5_A Non-ribosomal peptide s 45.8 50 0.0017 33.2 8.0 92 145-246 88-182 (570)
69 3o83_A Peptide arylation enzym 42.0 53 0.0018 32.7 7.4 91 145-245 43-136 (544)
70 1mdb_A 2,3-dihydroxybenzoate-A 41.0 55 0.0019 32.5 7.4 79 165-244 49-130 (539)
71 3l8c_A D-alanine--poly(phospho 40.6 51 0.0018 32.5 7.0 78 166-244 29-109 (521)
72 4aec_A Cysteine synthase, mito 40.4 1.1E+02 0.0039 29.3 9.0 67 13-79 162-229 (430)
73 1z7w_A Cysteine synthase; tran 39.2 1.3E+02 0.0043 27.5 9.0 67 13-79 54-121 (322)
74 3gqw_A Fatty acid AMP ligase; 37.9 99 0.0034 30.8 8.8 85 165-250 48-142 (576)
75 3e7w_A D-alanine--poly(phospho 37.4 87 0.003 30.8 8.1 61 21-81 181-244 (511)
76 2q3b_A Cysteine synthase A; py 36.4 1.6E+02 0.0055 26.6 9.2 58 21-79 64-121 (313)
77 3dwg_A Cysteine synthase B; su 36.2 1.4E+02 0.0049 27.2 8.8 66 13-79 61-127 (325)
78 1wy5_A TILS, hypothetical UPF0 35.5 2.2E+02 0.0074 25.9 9.9 70 9-78 7-91 (317)
79 3fce_A D-alanine--poly(phospho 34.8 69 0.0024 31.5 6.9 77 166-243 26-105 (512)
80 4h1h_A LMO1638 protein; MCCF-l 34.0 1.4E+02 0.0046 27.5 8.2 59 21-79 9-86 (327)
81 3rg2_A Enterobactin synthase c 33.4 93 0.0032 31.5 7.7 90 146-245 39-131 (617)
82 4eez_A Alcohol dehydrogenase 1 33.0 97 0.0033 28.5 7.3 60 17-79 156-216 (348)
83 2pqm_A Cysteine synthase; OASS 32.6 2.1E+02 0.007 26.4 9.4 58 21-79 75-132 (343)
84 2v03_A Cysteine synthase B; py 32.0 2.3E+02 0.0078 25.5 9.4 58 21-79 58-115 (303)
85 3ri6_A O-acetylhomoserine sulf 32.0 1.5E+02 0.0052 28.4 8.6 55 21-77 118-173 (430)
86 2egu_A Cysteine synthase; O-ac 31.7 1.7E+02 0.0058 26.4 8.5 58 21-79 62-119 (308)
87 3sr3_A Microcin immunity prote 31.4 1.6E+02 0.0054 27.2 8.2 59 21-79 10-87 (336)
88 3dzz_A Putative pyridoxal 5'-p 31.3 1.5E+02 0.005 27.5 8.3 55 21-78 106-167 (391)
89 3ju7_A Putative PLP-dependent 30.5 82 0.0028 29.5 6.3 62 14-78 67-136 (377)
90 1eg5_A Aminotransferase; PLP-d 30.3 1.7E+02 0.0057 27.0 8.5 33 22-54 87-119 (384)
91 4dg8_A PA1221; ANL superfamily 29.9 1.1E+02 0.0039 31.0 7.6 90 145-244 40-132 (620)
92 1yj7_A ESCJ; mixed alpha/beta, 28.3 1.6E+02 0.0055 24.0 6.8 71 415-490 92-164 (171)
93 3tla_A MCCF; serine protease, 28.3 1.7E+02 0.0059 27.3 7.9 59 21-79 40-117 (371)
94 3a2k_A TRNA(Ile)-lysidine synt 28.0 2E+02 0.0068 27.9 8.7 67 12-78 4-85 (464)
95 1ve1_A O-acetylserine sulfhydr 26.9 3E+02 0.01 24.6 9.3 59 21-80 57-117 (304)
96 3ppl_A Aspartate aminotransfer 26.9 4E+02 0.014 25.0 11.8 53 24-79 133-188 (427)
97 3nyq_A Malonyl-COA ligase; A/B 26.7 1.1E+02 0.0039 29.9 6.8 78 165-245 47-124 (505)
98 3a2b_A Serine palmitoyltransfe 26.7 2.7E+02 0.0093 25.8 9.4 55 21-79 124-181 (398)
99 4e5s_A MCCFLIKE protein (BA_56 26.4 1.7E+02 0.0058 26.9 7.4 59 21-79 9-86 (331)
100 4eb5_A Probable cysteine desul 26.1 1.5E+02 0.0052 27.2 7.4 33 46-78 86-119 (382)
101 2z61_A Probable aspartate amin 26.0 3.8E+02 0.013 24.4 11.4 52 21-78 110-161 (370)
102 4hvk_A Probable cysteine desul 25.9 2E+02 0.0068 26.3 8.2 12 67-78 108-119 (382)
103 3kki_A CAI-1 autoinducer synth 25.4 1.7E+02 0.0057 27.5 7.6 56 21-80 140-195 (409)
104 3ite_A SIDN siderophore synthe 25.2 1.6E+02 0.0056 29.1 7.8 97 145-244 33-134 (562)
105 3zrp_A Serine-pyruvate aminotr 24.9 1.7E+02 0.0058 26.9 7.5 58 21-79 74-135 (384)
106 1h2b_A Alcohol dehydrogenase; 24.6 1.9E+02 0.0067 26.6 7.7 56 20-78 182-238 (359)
107 3pc3_A CG1753, isoform A; CBS, 24.3 2.7E+02 0.0093 27.4 9.1 58 21-79 110-167 (527)
108 1xng_A NH(3)-dependent NAD(+) 24.2 1.8E+02 0.006 25.7 7.0 72 7-78 6-86 (268)
109 1y7l_A O-acetylserine sulfhydr 23.4 1.7E+02 0.0058 26.5 6.9 58 21-79 59-116 (316)
110 3s2e_A Zinc-containing alcohol 22.5 2.1E+02 0.0073 26.0 7.5 59 16-78 158-217 (340)
111 4h27_A L-serine dehydratase/L- 22.5 1.7E+02 0.0057 27.3 6.7 60 21-80 89-148 (364)
112 2e7j_A SEP-tRNA:Cys-tRNA synth 22.2 3.6E+02 0.012 24.4 9.2 56 21-79 90-155 (371)
113 2rkb_A Serine dehydratase-like 21.9 1.8E+02 0.0063 26.3 6.8 56 24-80 54-109 (318)
114 1zsy_A Mitochondrial 2-enoyl t 21.8 2.6E+02 0.0087 25.8 7.9 58 21-79 165-224 (357)
115 3ndn_A O-succinylhomoserine su 21.3 2.9E+02 0.0098 26.1 8.3 55 21-77 117-172 (414)
116 3lvm_A Cysteine desulfurase; s 21.2 3.1E+02 0.011 25.6 8.6 30 23-52 112-141 (423)
117 3isl_A Purine catabolism prote 21.1 2.6E+02 0.0089 26.0 8.1 15 63-77 101-115 (416)
118 2hjv_A ATP-dependent RNA helic 20.9 3.1E+02 0.011 21.6 7.7 69 9-79 22-93 (163)
119 3n75_A LDC, lysine decarboxyla 20.6 3.7E+02 0.013 27.8 9.3 56 21-79 232-306 (715)
120 1d2f_A MALY protein; aminotran 20.5 3.1E+02 0.011 25.2 8.4 54 21-77 108-168 (390)
121 3euc_A Histidinol-phosphate am 20.5 4.8E+02 0.016 23.6 11.4 55 21-78 106-164 (367)
122 3kax_A Aminotransferase, class 20.4 3.3E+02 0.011 24.8 8.6 53 21-77 103-162 (383)
123 2zsj_A Threonine synthase; PLP 20.4 2.1E+02 0.0072 26.4 7.0 59 22-80 76-135 (352)
124 3aey_A Threonine synthase; PLP 20.2 2E+02 0.0068 26.6 6.7 59 22-80 74-133 (351)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=3.2e-75 Score=601.65 Aligned_cols=474 Identities=20% Similarity=0.236 Sum_probs=395.4
Q ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++
T Consensus 50 ~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~ 129 (536)
T 3ni2_A 50 YTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQA 129 (536)
T ss_dssp EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECG
T ss_pred EEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEECh
Confidence 59999999999999999999 99999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114 80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT 159 (518)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT 159 (518)
... ..+...........+.+.. ...+...+.++...... ..+.....++++++++||||||
T Consensus 130 ~~~------~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTT 190 (536)
T 3ni2_A 130 CYY------EKVKDFARESDVKVMCVDS--------APDGCLHFSELTQADEN-----EAPQVDISPDDVVALPYSSGTT 190 (536)
T ss_dssp GGT------HHHHHHHHHHTCEEEESSC--------CCTTCEETHHHHTSCGG-----GCCCCCCCTTSEEECCEECTTS
T ss_pred HHH------HHHHHHHhhcCceEEEecC--------CCCCccCHHHHhhcccc-----ccccCCCCccCEEEEEcCCCcc
Confidence 543 2222222222222222211 11233455555443221 1122334679999999999999
Q ss_pred CCCceEEeccchhHHHhhhccc----cccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHH
Q 010114 160 GEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQD 234 (518)
Q Consensus 160 G~pK~v~~s~~~~~~~~~~~~~----~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~ 234 (518)
|.||||+++|.+++.++..... .+.+.++|++++.+|++|.+++.. ++.++..|+++++.+ ..++..+++.+++
T Consensus 191 G~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~ 269 (536)
T 3ni2_A 191 GLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMP-KFEIGSLLGLIEK 269 (536)
T ss_dssp SSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECS-SCCHHHHHHHHHH
T ss_pred ccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcC-CCCHHHHHHHHHH
Confidence 9999999999999887654432 456789999999999999999966 889999999999987 5778999999999
Q ss_pred cCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCC----C
Q 010114 235 AGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL----L 310 (518)
Q Consensus 235 ~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~----~ 310 (518)
+++|++.++|+++..+++.......++++||.+++|||++++++.+++.+.++++++++.||+||+++++..+.. .
T Consensus 270 ~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~ 349 (536)
T 3ni2_A 270 YKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEP 349 (536)
T ss_dssp HTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSC
T ss_pred hCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCcc
Confidence 999999999999999999887777889999999999999999999999998888999999999999976554421 2
Q ss_pred CCcccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceE
Q 010114 311 QPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDII 388 (518)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~ 388 (518)
.....+++|.|+++++++|+| ++|++++.|+ .|||++ ++.++.+| +.+++.+...+ ..++||+|||+|
T Consensus 350 ~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~--~GEl~v~g~~v~~GY--~~~p~~t~~~~------~~~g~~~TGDl~ 419 (536)
T 3ni2_A 350 FDIKPGACGTVVRNAEMKIVDPETGASLPRNQ--PGEICIRGDQIMKGY--LNDPEATSRTI------DKEGWLHTGDIG 419 (536)
T ss_dssp CCCCTTCCCEECSSCEEEEECTTTCCBCCTTC--CEEEEEESTTSCSEE--TTCHHHHHHHB------CTTSCEEEEEEE
T ss_pred ccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCC--ccEEEEeCcccchhh--cCChhHHHhhc------cCCCceEcccEE
Confidence 234668899999999999999 7799999999 699999 77777653 22333333333 356799999999
Q ss_pred EEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHH
Q 010114 389 KRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIF 468 (518)
Q Consensus 389 ~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~ 468 (518)
++|+||+++++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.++++|+..++...+.++++++
T Consensus 420 ~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~l~~~- 496 (536)
T 3ni2_A 420 YIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-AHPEISDAAVVGLKDEDAG-EVPVAFVVKSEKSQATEDEIKQY- 496 (536)
T ss_dssp EECTTSCEEEEEECSCCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCCCHHHHHHH-
T ss_pred EEcCCceEEEEecccceEEECCEEECHHHHHHHHH-hCCCcceEEEEeeecCCCC-ceeEEEEEecCCCCCCHHHHHHH-
Confidence 99999999999999999999999999999999997 9999999999999998888 89999999988766666665555
Q ss_pred HHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhc
Q 010114 469 SKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH 510 (518)
Q Consensus 469 ~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~ 510 (518)
++++|+.|++|..++++++||+|++||++|++|++++.+
T Consensus 497 ---l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 497 ---ISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp ---HHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred ---HHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 678999999999999999999999999999999988753
No 2
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.3e-74 Score=592.15 Aligned_cols=470 Identities=21% Similarity=0.219 Sum_probs=391.3
Q ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++
T Consensus 29 ~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~ 108 (503)
T 4fuq_A 29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDP 108 (503)
T ss_dssp EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECG
T ss_pred EEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECc
Confidence 59999999999999999999 99999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114 80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT 159 (518)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT 159 (518)
... ................+... ....+.+...... .........++++++++||||||
T Consensus 109 ~~~------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-----~~~~~~~~~~~d~a~i~~TSGTT 167 (503)
T 4fuq_A 109 SKR------DGIAAIAAKVGATVETLGPD----------GRGSLTDAAAGAS-----EAFATIDRGADDLAAILYTSGTT 167 (503)
T ss_dssp GGT------TTTHHHHHHHTCEEEECCTT----------SCSHHHHHHHTSC-----SCCCCCCCCTTSEEEEEECC--C
T ss_pred hhh------HHHHHHHhhcCceEEEecCC----------cccccchhhhcCC-----CCcCcCCCCCCCeEEEEECCCcc
Confidence 543 12222222111111111100 0011222111111 11222344679999999999999
Q ss_pred CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHcCcc
Q 010114 160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVT 238 (518)
Q Consensus 160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t 238 (518)
|.||||+++|.++..+.......+++.++|++++.+|++|.+++.. .+.+++.|+++++.+ ..++..+++.++ ++|
T Consensus 168 G~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~--~~t 244 (503)
T 4fuq_A 168 GRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLP-KFDPDKILDLMA--RAT 244 (503)
T ss_dssp CSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECS-SCCHHHHHHHHT--TCC
T ss_pred cCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcC-CCCHHHHHHHHh--hcC
Confidence 9999999999999999888888889999999999999999999765 778899999999887 578889999987 899
Q ss_pred EEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCCC
Q 010114 239 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAF 318 (518)
Q Consensus 239 ~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~ 318 (518)
+++++|+++..+++.......+++++|.+++||+++++++.+.+.+.+ ++++++.||+||++..+. .........+++
T Consensus 245 ~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~-~~~~~~~~~~~~ 322 (503)
T 4fuq_A 245 VLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTS-NPYDGDRVPGAV 322 (503)
T ss_dssp EEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBC-CCSSSCCCTTEE
T ss_pred EEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEcccccCcccc-cCCCCCCcCCcc
Confidence 999999999999998877777889999999999999999999998776 678999999999987643 333344567889
Q ss_pred CcccccccEEEEC-CCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceE
Q 010114 319 STATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI 396 (518)
Q Consensus 319 g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l 396 (518)
|+|+++++++|+| ++|++++.|+ .|||++ ++.++.+| +.+++.+...| ..++||+|||+|++|+||++
T Consensus 323 G~p~~~~~~~i~d~~~g~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~f------~~~g~~~TGDl~~~~~dG~l 392 (503)
T 4fuq_A 323 GPALPGVSARVTDPETGKELPRGD--IGMIEVKGPNVFKGY--WRMPEKTKSEF------RDDGFFITGDLGKIDERGYV 392 (503)
T ss_dssp EEBCTTCEEEEECTTTCCBCCTTC--CEEEEEESTTSCCCB--TTCHHHHHHTB------CTTSCEEEEEEEEECTTCEE
T ss_pred ccCCCCeEEEEEECCCCCCCcCCC--ceEEEEECCchhhhh--cCChhhhHhhh------CCCCCeEcceeEEEcCCCcE
Confidence 9999999999999 8999999999 699999 77777654 23333333333 34579999999999999999
Q ss_pred EEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhcc
Q 010114 397 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKL 476 (518)
Q Consensus 397 ~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l 476 (518)
+++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.+.++|+++++...+.+++.+. ++++|
T Consensus 393 ~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~v~~~~~~~~~~~~l~~~----l~~~L 466 (503)
T 4fuq_A 393 HILGRGKDLVITGGFNVYPKEIESEID-AMPGVVESAVIGVPHADFG-EGVTAVVVRDKGATIDEAQVLHG----LDGQL 466 (503)
T ss_dssp EECCSSTTCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCCCHHHHHHH----HBTTB
T ss_pred EEEecCCCEEEECCEEECHHHHHHHHH-hCCCeeEEEEEEeEchhcC-ceeEEEEEeCCCCCCCHHHHHHH----HHhhc
Confidence 999999999999999999999999997 9999999999999998888 89999999988776676665555 77899
Q ss_pred CCccccceEEEecCCCCCCCchhHHHHHHHHHhccc
Q 010114 477 NPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 512 (518)
Q Consensus 477 ~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~ 512 (518)
+.|++|..|+++++||+|++||++|++|++++++..
T Consensus 467 ~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 502 (503)
T 4fuq_A 467 AKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDIY 502 (503)
T ss_dssp CGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTTT
T ss_pred ccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHhh
Confidence 999999999999999999999999999999998654
No 3
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=2.8e-74 Score=606.34 Aligned_cols=495 Identities=25% Similarity=0.362 Sum_probs=396.6
Q ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+||+||.++++++|+.|++. +++||+|+++++|++|+++++|||+++|++++|+++.++++++.+++++++++++|+++
T Consensus 108 lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp EEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred EeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 59999999999999999999 99999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhccCCCCc---chhhhhccCC---Cc-eeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEE
Q 010114 80 FILRGGRKFP---LYSKVLGAAP---LK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI 152 (518)
Q Consensus 80 ~~~~~~~~~~---~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 152 (518)
......+..+ .+........ .. .+++......... .......|.+++..... ...+....++++++|
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i 261 (652)
T 1pg4_A 188 EGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKASP-----EHQPEAMNAEDPLFI 261 (652)
T ss_dssp EEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC-CBTTEEEHHHHHTTSCS-----CCCCCCEETTSEEEE
T ss_pred ccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccc-cCCCceeHHHHHhhcCC-----CCCccccCCCCCEEE
Confidence 5432221111 1222222221 11 2222111111100 11123456676654322 112223456899999
Q ss_pred EeccCCCCCCceEEeccchhHHHhh-hccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCC---CChhH
Q 010114 153 LFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---PLERS 227 (518)
Q Consensus 153 ~~TSGtTG~pK~v~~s~~~~~~~~~-~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~---~~~~~ 227 (518)
+|||||||.||||+++|.+++.+.. .....+++.++|++++..|++|++|+.. ++.+|+.|+++++.+.. .++..
T Consensus 262 lyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~ 341 (652)
T 1pg4_A 262 LYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPAR 341 (652)
T ss_dssp EEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTH
T ss_pred EeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHH
Confidence 9999999999999999999877654 3334578899999999999999999854 88999999999998753 46889
Q ss_pred HHHHHHHcCccEEEechHHHHHHHhccc--CCCCCccchhhhhccCCCCCchhhhHhhhccc--cCceecccccccccee
Q 010114 228 FGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAIIESCGGTELSSA 303 (518)
Q Consensus 228 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~--~~~i~~~yg~tE~~~~ 303 (518)
+++.|+++++|+++++|++++.|++... ....++++||.++++||++++++.+++.+.++ .+++++.||+||+++.
T Consensus 342 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~ 421 (652)
T 1pg4_A 342 MCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGF 421 (652)
T ss_dssp HHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSC
T ss_pred HHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccc
Confidence 9999999999999999999999998754 34567899999999999999999999988764 2789999999999876
Q ss_pred EeecCC-CCCcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-c--ccccCCccccccccccceeeeCCCCCCCc
Q 010114 304 YIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F--PLYLGASDRLLNADHEEVYFRGMPMYKGM 379 (518)
Q Consensus 304 ~~~~~~-~~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (518)
++.... ......+++|.|++|++++|+|++|++++.|+ .|||++ + ++++.+|. .+.+.+...+ +...+
T Consensus 422 ~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~--~GEl~i~g~~p~~~~gY~--~~~e~~~~~~----~~~~~ 493 (652)
T 1pg4_A 422 MITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGAT--EGNLVITDSWPGQARTLF--GDHERFEQTY----FSTFK 493 (652)
T ss_dssp SBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSE--EEEEEECSCCTTCCCEET--TCHHHHHHHH----HSSST
T ss_pred eecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCc--eEEEEEccCCCchhhhhc--CCHHHHHhhh----hhcCC
Confidence 554432 23456789999999999999999999999988 699999 5 34444322 1221111111 11235
Q ss_pred eeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCC
Q 010114 380 CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS 459 (518)
Q Consensus 380 ~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~ 459 (518)
+||+|||+|++|+||+|+++||.||+||++|++|+|.|||++|. +||+|.+++|++.+++..| +.+++||+++++...
T Consensus 494 g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~~~~~g-~~l~a~Vv~~~~~~~ 571 (652)
T 1pg4_A 494 NMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEP 571 (652)
T ss_dssp TSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCC
T ss_pred CEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEEcCCCC-eEEEEEEEECCCCCC
Confidence 69999999999999999999999999999999999999999997 9999999999999988888 899999999876543
Q ss_pred ChhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhccc
Q 010114 460 QPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 512 (518)
Q Consensus 460 ~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~ 512 (518)
+ +++.+.++++++++|++|++|..|+++++||+|++||++|+.|++++.+++
T Consensus 572 ~-~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~ 623 (652)
T 1pg4_A 572 S-PELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDT 623 (652)
T ss_dssp C-HHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC-
T ss_pred C-HHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCCC
Confidence 3 456777888899999999999999999999999999999999999998764
No 4
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=2.1e-74 Score=597.17 Aligned_cols=481 Identities=19% Similarity=0.185 Sum_probs=359.6
Q ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++
T Consensus 53 ~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~ 132 (549)
T 3g7s_A 53 MNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHS 132 (549)
T ss_dssp EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEG
T ss_pred eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEECh
Confidence 59999999999999999999 99999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114 80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT 159 (518)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT 159 (518)
... ..+...........++... ....++.++........ .......++++++|+||||||
T Consensus 133 ~~~------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~----~~~~~~~~~d~a~i~~TSGTT 192 (549)
T 3g7s_A 133 MLY------ENFKPVLEKTGVERVFVVG----------GEVNSLSEVMDSGSEDF----ENVKVNPEEDVALIPYTGGTT 192 (549)
T ss_dssp GGH------HHHHHHHTTSCCCEEEEET----------CSSSCHHHHHHHSCSCC----CCCCCCTTTSEEECCEECCCC
T ss_pred HHH------HHHHHHHhhCCCcEEEEeC----------CCCcCHHHHHhcCcccc----ccccCCCCCCEEEEEECCCcc
Confidence 543 2233333333322222211 12234555554433211 111122348999999999999
Q ss_pred CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccE
Q 010114 160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTV 239 (518)
Q Consensus 160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~ 239 (518)
|.||||+++|.+++.++......+++.++|++++.+|++|.+++..++.++..|+++++.+ ..++..+++.|+++++|+
T Consensus 193 G~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~ 271 (549)
T 3g7s_A 193 GMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG-MFNQEMLAENIEKYKGTF 271 (549)
T ss_dssp C-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-SCCHHHHHHHHHHTTCCE
T ss_pred CCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-CCCHHHHHHHHHHhCCeE
Confidence 9999999999999999888878889999999999999999999888888999999999987 678899999999999999
Q ss_pred EEechHHHHHHHhcccCCC--CCccchhhhhccCCCCCchhhhHhhhc----cc--cCceeccccccccceeEeecCCCC
Q 010114 240 LGTVPSLVKAWRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSK----AW--YNAIIESCGGTELSSAYIQGSLLQ 311 (518)
Q Consensus 240 l~~~P~~~~~l~~~~~~~~--~~l~~lr~i~~~Ge~l~~~~~~~~~~~----~~--~~~i~~~yg~tE~~~~~~~~~~~~ 311 (518)
++++|+++..|++...... .+++++|.+++||+++++++.+++.+. +. ..++++.||+||+++++.......
T Consensus 272 ~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~ 351 (549)
T 3g7s_A 272 SWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR 351 (549)
T ss_dssp EEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGG
T ss_pred EEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccc
Confidence 9999999999988754443 678999999999999999999988766 42 278999999999998877766655
Q ss_pred CcccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEE
Q 010114 312 PQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIK 389 (518)
Q Consensus 312 ~~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~ 389 (518)
....+++|.|+++++++|+| ++|++++.|+ .|||++ ++.++.+| +.+++.+...|..+ .++.+||+|||+|+
T Consensus 352 ~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~f~~~--~~g~~~~~TGDl~~ 425 (549)
T 3g7s_A 352 LDKSTTQGVPMSDIELKVISLEDGRELGVGE--SGEIVIRGPNIFKGY--WKREKENQECWWYD--EKGRKFFRTGDVGF 425 (549)
T ss_dssp GGGTTSCCEECTTCEEEEECSSSCCEECTTC--CEEEEEESTTSCSEE--TTCTTGGGTSEEEC--TTCCEEEEEEEEEE
T ss_pred cCcCCCccccCCCCEEEEEeCCCCcCCCCCC--ceEEEEECcchhhhh--CCChhhhhhhhhcc--CCCCceEccCcEEE
Confidence 56778999999999999999 8999999999 699999 77776654 33444444443211 24566999999999
Q ss_pred EecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCC--CCCChhHHHHH
Q 010114 390 RTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG--FTSQPDKLKMI 467 (518)
Q Consensus 390 ~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~--~~~~~~~l~~~ 467 (518)
+|+||+|+++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.+.++|+++++ ...+.++++++
T Consensus 426 ~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~~~l~~~ 503 (549)
T 3g7s_A 426 IDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLM-KHEAVMDVAVIGKPDEEAG-EVPKAFIVLKPEYRGKVDEEDIIEW 503 (549)
T ss_dssp ECTTSCEEEEEEC------------CHHHHHHHT-TSTTEEEEEEECCCC-------CEEEEEECSTTTTSCCHHHHHHH
T ss_pred EcCCceEEEeccccceEEECCEEECHHHHHHHHH-hCCCeeeEEEEeeEccccC-ceEEEEEEECCCccCcCCHHHHHHH
Confidence 9999999999999999999999999999999997 9999999999999998888 899999999876 34455555544
Q ss_pred HHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhccccc
Q 010114 468 FSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSV 514 (518)
Q Consensus 468 ~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~~ 514 (518)
++++|+.|++|..|+++++||+|++||++|++|++.+.++-..
T Consensus 504 ----l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~~ 546 (549)
T 3g7s_A 504 ----VRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEGHHH 546 (549)
T ss_dssp ----HHTTCC-----CCCCEEEECC----------------------
T ss_pred ----HHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhccccc
Confidence 7789999999999999999999999999999999998765433
No 5
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=5.9e-74 Score=593.04 Aligned_cols=484 Identities=19% Similarity=0.182 Sum_probs=394.4
Q ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+||+||.++++++|+.|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++
T Consensus 53 ~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 132 (548)
T 2d1s_A 53 YSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSK 132 (548)
T ss_dssp EEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECT
T ss_pred eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcH
Confidence 59999999999999999999 99999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhccCCCCcchhhhhccCC-CceeeccccccCCCCCCcccccchhhhhccCCCCCCC-CCCCCCCC-CCCCEEEEEecc
Q 010114 80 FILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP-NYYSPVYN-PVDAVVNILFSS 156 (518)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~i~~TS 156 (518)
... ..+....+..+ ...++.... .. ...+...+.+++........+ ....+... .++++++++|||
T Consensus 133 ~~~------~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TS 201 (548)
T 2d1s_A 133 KGL------DKVITVQKTVTTIKTIVILDS-KV----DYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSS 201 (548)
T ss_dssp TTH------HHHHHHHHHSTTCCEEEETTC-SS----CBTTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCS
T ss_pred HHH------HHHHHHhcCCCCCCEEEEeCC-cc----cccccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCC
Confidence 532 22222222221 111221111 00 001223455555433210000 00110011 238999999999
Q ss_pred CCCCCCceEEeccchhHHHhhhcccc---ccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHH
Q 010114 157 GTTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFV 232 (518)
Q Consensus 157 GtTG~pK~v~~s~~~~~~~~~~~~~~---~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i 232 (518)
||||.||||+++|.++..++...... +++.++|++++.+|++|.+++.. ++.++ .|+++++.+ .+++..+++.|
T Consensus 202 GTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~~~~~~~~~~i 279 (548)
T 2d1s_A 202 GSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-KFDEETFLKTL 279 (548)
T ss_dssp SCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-CCCHHHHHHHH
T ss_pred CCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-CCCHHHHHHHH
Confidence 99999999999999999887766555 67889999999999999999877 66777 999999987 56889999999
Q ss_pred HHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCC
Q 010114 233 QDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQP 312 (518)
Q Consensus 233 ~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~ 312 (518)
+++++|+++++|+++..|.+.......+++++|.+++|||++++++.+++.+.++++++++.||+||++..+..... ..
T Consensus 280 ~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~-~~ 358 (548)
T 2d1s_A 280 QDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPE-GD 358 (548)
T ss_dssp HHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCT-TC
T ss_pred HHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCc-cc
Confidence 99999999999999999998776666788999999999999999999999988877889999999999876655432 33
Q ss_pred cccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEE
Q 010114 313 QAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR 390 (518)
Q Consensus 313 ~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~ 390 (518)
...+++|.|+++++++|+| ++|++++.|+ .|||++ ++.++.+| +.+++.+...+ ..++||+|||+|++
T Consensus 359 ~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~f------~~~g~~~TGDl~~~ 428 (548)
T 2d1s_A 359 DKPGASGKVVPLFKAKVIDLDTKKSLGPNR--RGEVCVKGPMLMKGY--VNNPEATKELI------DEEGWLHTGDIGYY 428 (548)
T ss_dssp CCTTCCBEECTTCEEEEECTTTCCBCCTTC--CEEEEEESTTSCSEE--TTCHHHHHHHB------CTTSCEEEEEEEEE
T ss_pred CCCCCCCccCCCceEEEEeCCcCccCCCCC--CeEEEECCHHHhhhh--cCChHHhhhcc------cCCcEEEccCEEEE
Confidence 5678999999999999999 8999999999 699999 77666653 22333333333 24679999999999
Q ss_pred ecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHH
Q 010114 391 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSK 470 (518)
Q Consensus 391 ~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~ 470 (518)
|+||+++++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.++++|+++++...+.+++.++
T Consensus 429 ~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~V~~~~~~~~g-~~~~a~vv~~~~~~~~~~~l~~~--- 503 (548)
T 2d1s_A 429 DEEKHFFIVDRLKSLIKYKGYQVPPAELESVLL-QHPSIFDAGVAGVPDPVAG-ELPGAVVVLESGKNMTEKEVMDY--- 503 (548)
T ss_dssp CTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCCCHHHHHHH---
T ss_pred cCCCeEEEeccccceEEECCEEECHHHHHHHHH-hCCCccEEEEEEEEcCCCC-eeeEEEEEEcCCCCCCHHHHHHH---
Confidence 999999999999999999999999999999998 9999999999999988888 89999999987665666555555
Q ss_pred HHHhccCCccccc-eEEEecCCCCCCCchhHHHHHHHHHhccccc
Q 010114 471 AIQSKLNPLFKVS-LVKVVPEFPRTASNKLLRRVLRDQIKHELSV 514 (518)
Q Consensus 471 ~~~~~l~~~~~p~-~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~~ 514 (518)
++++|+.|++|. .|+++++||+|++||++|++|++++++.++.
T Consensus 504 -~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~ 547 (548)
T 2d1s_A 504 -VASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPVAK 547 (548)
T ss_dssp -HHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC--
T ss_pred -HHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhhhc
Confidence 678999999998 9999999999999999999999999988763
No 6
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.5e-73 Score=592.66 Aligned_cols=482 Identities=19% Similarity=0.205 Sum_probs=375.3
Q ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.
T Consensus 87 ~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 87 FTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEES
T ss_pred EeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEec
Confidence 59999999999999999999 99999999999999999999999999999999999999999999999999999999976
Q ss_pred hhhccCCCCcchhhhhccCCC---ceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEecc
Q 010114 80 FILRGGRKFPLYSKVLGAAPL---KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSS 156 (518)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS 156 (518)
+.. ....+......... ..+.+. .. ...+..++.+.+......... ........++++++++|||
T Consensus 167 ~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TS 234 (580)
T 3etc_A 167 EDD----VPEQVDEAHAECGDIPLKKAKVG--GD-----VLEGWIDFRKELEESSPIFER-PTGEVSTKNEDICLVYFSS 234 (580)
T ss_dssp STT----HHHHHHHHHHHHCSCCCEEEEES--SS-----CCTTCEEHHHHHHHSCSCCCC-CCGGGSCCTTSEEEEEEEC
T ss_pred chh----HHHHHHHHhhhCCCcceEEEEeC--Cc-----cccccccHHHHHhhCCccccc-CccccCCCCCCcEEEEEeC
Confidence 421 00122222222211 111111 10 123345566655543321110 1111235679999999999
Q ss_pred CCCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEec-CCCChhHHHHHHHH
Q 010114 157 GTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQ-GSPLERSFGKFVQD 234 (518)
Q Consensus 157 GtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~-~~~~~~~~~~~i~~ 234 (518)
||||.||+|.++|.+++..+.......++.+++++++..|++|..+... ++.++..|+++++.+ ..+++..+++.|++
T Consensus 235 GTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~ 314 (580)
T 3etc_A 235 GTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASK 314 (580)
T ss_dssp CSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHH
T ss_pred CCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHH
Confidence 9999999999999998887766555677899999999999999998876 888999999998885 45678999999999
Q ss_pred cCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcc
Q 010114 235 AGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA 314 (518)
Q Consensus 235 ~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~ 314 (518)
+++|+++++|++++.|++.. ....++++||.+++|||++++++.+++.+.+ ++++++.||+||+++.+...+. ....
T Consensus 315 ~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~-~~~~ 391 (580)
T 3etc_A 315 YGVTTFCAPPTIYRFLIKED-LSHYNFSTLKYAVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATFPW-MEPK 391 (580)
T ss_dssp HTCCEEEECHHHHHHHHTSC-C---CCTTCCEEEECSSCCCHHHHHHHHHHH-SCCCEEEECCTTSSCCEECCTT-SCCC
T ss_pred HCCeEEEccHHHHHHHHhcc-cccCCCccceEEEEccCCCCHHHHHHHHHHh-CCeEecccccccccceeecCCC-CCCC
Confidence 99999999999999998863 4556789999999999999999999998776 6889999999999876554433 3456
Q ss_pred cCCCCcccccccEEEECCCCCCCCCCCCeeeeeeec------ccccCCccccccccccceeeeCCCCCCCceeccccceE
Q 010114 315 FGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF------PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDII 388 (518)
Q Consensus 315 ~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~ 388 (518)
.+++|+|+++++++|+|++|++++.|+ .|||+++ +.++.+ ++.+++.+...+. ++||+|||+|
T Consensus 392 ~~~~G~p~~~~~v~ivd~~g~~~~~g~--~GEl~v~~~~g~~~~~~~g--Y~~~p~~t~~~f~-------~gwy~TGDlg 460 (580)
T 3etc_A 392 PGSIGKPTPGYKIELMDRDGRLCEVGE--EGEIVINTMEGKPVGLFVH--YGKDPERTEETWH-------DGYYHTGDMA 460 (580)
T ss_dssp TTCCBEECTTCEEEEECTTSCBCCTTC--CEEEEEECTTCCCTTCCCE--ETTCHHHHHHHEE-------TTEEEEEEEE
T ss_pred CCccccCCCCCEEEEECCCCCCCCCCC--ceEEEEecCCCCCCeeecc--ccCCHhHHHhhcC-------CCEEecCcEE
Confidence 789999999999999999999999999 6999994 334333 2334444444442 4699999999
Q ss_pred EEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHH
Q 010114 389 KRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIF 468 (518)
Q Consensus 389 ~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~ 468 (518)
++|+||+|+++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.+.++|++.++... .+++.+.+
T Consensus 461 ~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~-~~p~V~~a~Vvg~~~~~~g-~~~~a~vv~~~~~~~-~~~~~~~l 537 (580)
T 3etc_A 461 WMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALI-QHPAVLECAITGVPDPVRG-QVIKATIVLTKDYTP-SDSLKNEL 537 (580)
T ss_dssp EECTTSCEEEEEESSSCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCC-CHHHHHHH
T ss_pred EECCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCCCeeeEEEEeeeccCCC-cEEEEEEEECCCCCC-CHHHHHHH
Confidence 99999999999999999999999999999999997 9999999999999999888 999999999886543 35667778
Q ss_pred HHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114 469 SKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 511 (518)
Q Consensus 469 ~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~ 511 (518)
+++++++|++|++|..|+++++||+|++|||+|++|++++.++
T Consensus 538 ~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~q 580 (580)
T 3etc_A 538 QDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQSQ 580 (580)
T ss_dssp HHHHHHHSCGGGCCSEEEEECC---------------------
T ss_pred HHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhcC
Confidence 8889999999999999999999999999999999999988753
No 7
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=7.2e-74 Score=588.55 Aligned_cols=470 Identities=22% Similarity=0.218 Sum_probs=386.4
Q ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++
T Consensus 44 ~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 123 (517)
T 3r44_A 44 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGA 123 (517)
T ss_dssp EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECG
T ss_pred eeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECC
Confidence 59999999999999999999 99999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114 80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT 159 (518)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT 159 (518)
... +....+.........++. ......+.+.+..... ........++++++++||||||
T Consensus 124 ~~~------~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTT 182 (517)
T 3r44_A 124 PSA------PVIDAIRAQADPPGTVTD----------WIGADSLAERLRSAAA-----DEPAVECGGDDNLFIMYTSGTT 182 (517)
T ss_dssp GGH------HHHHHHHHSSSCCTTCCE----------EEEHHHHHHHHHHCCC-----CCCCCCCCTTSEEEEEEECC--
T ss_pred chH------HHHHHHHhccCCccEEEE----------ccCcccHHHHhhccCc-----CCCCCCCCCCCeEEEEECCccc
Confidence 543 222222221111100000 0011123333332221 1122334679999999999999
Q ss_pred CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccE
Q 010114 160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTV 239 (518)
Q Consensus 160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~ 239 (518)
|.||||+++|.++...+......+++.++|++++.+|++|.+++...+.++..|+++++.+ ..++..+++.++++++|+
T Consensus 183 G~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 261 (517)
T 3r44_A 183 GHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMP-QFDATKVWSLIVEERVCI 261 (517)
T ss_dssp -CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCCE
T ss_pred ccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeC-CCCHHHHHHHHHHhCCeE
Confidence 9999999999999999888878889999999999999999999987555555999999886 578899999999999999
Q ss_pred EEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCC-CCcccCCC
Q 010114 240 LGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL-QPQAFGAF 318 (518)
Q Consensus 240 l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~-~~~~~~~~ 318 (518)
+.++|+++..|.+.......+++++|.+++|||++++++.+++.+. ++++++.||+||+++..+..... .....+++
T Consensus 262 ~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~ 339 (517)
T 3r44_A 262 GGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGGTLLLSEDALRKAGSA 339 (517)
T ss_dssp EEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGTTCEEEECGGGTTTTTTCC
T ss_pred EEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEeecccccccceeecCCccccccCCCC
Confidence 9999999999998776666788999999999999999999998866 68899999999998755443332 34567899
Q ss_pred CcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceEE
Q 010114 319 STATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYII 397 (518)
Q Consensus 319 g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~ 397 (518)
|.|.++++++|+|++|.+++.| .|||++ ++.++.+| +.+++.+...+ .++||+|||+|++|+||+++
T Consensus 340 G~~~~~~~~~i~d~~~~~~~~g---~GEl~v~g~~v~~GY--~~~p~~t~~~f-------~~g~~~TGDl~~~~~dG~l~ 407 (517)
T 3r44_A 340 GRATMFTDVAVRGDDGVIREHG---EGEVVIKSDILLKEY--WNRPEATRDAF-------DNGWFRTGDIGEIDDEGYLY 407 (517)
T ss_dssp BEECTTEEEEEECTTSCEESSE---EEEEEEEETTSCSEE--TTCHHHHHHTE-------ETTEEEEEEEEEECTTSCEE
T ss_pred CcCCCCeEEEEECCCCCCCCCC---CeEEEEeCcchhhhh--CCChhhhHhhh-------cCCCEecceeEEEcCCeeEE
Confidence 9999999999999999999888 399999 77776653 23333444333 34699999999999999999
Q ss_pred EeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhccC
Q 010114 398 VQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLN 477 (518)
Q Consensus 398 ~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~ 477 (518)
++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.+.+++ ..++...+.++++++ ++++|+
T Consensus 408 ~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~~Vv~~~~~~~g-~~~~a~v-~~~~~~~~~~~l~~~----l~~~L~ 480 (517)
T 3r44_A 408 IKDRLKDMIISGGENVYPAEIESVII-GVPGVSEVAVIGLPDEKWG-EIAAAIV-VADQNEVSEQQIVEY----CGTRLA 480 (517)
T ss_dssp EEECGGGCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEE-EECTTTCCHHHHHHH----HHHHSC
T ss_pred EecCCcCEEEECCEEECHHHHHHHHH-hCCCEeEEEEEeccccccC-ceEEEEE-ECCCCCCCHHHHHHH----HHHhCC
Confidence 99999999999999999999999997 9999999999999988888 8888887 555555666665555 667899
Q ss_pred CccccceEEEecCCCCCCCchhHHHHHHHHHhcccc
Q 010114 478 PLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 513 (518)
Q Consensus 478 ~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~ 513 (518)
.|++|..|+++++||+|++||++|++|++++.+++.
T Consensus 481 ~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~ 516 (517)
T 3r44_A 481 RYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATVP 516 (517)
T ss_dssp GGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGCC
T ss_pred CCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhcc
Confidence 999999999999999999999999999999988764
No 8
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=6.2e-73 Score=581.42 Aligned_cols=471 Identities=20% Similarity=0.193 Sum_probs=398.9
Q ss_pred CCHHHHHHHHHHHHHHHhhc--cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114 1 MTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ 78 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~--v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~ 78 (518)
+||+||.++++++|++|++. .++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++
T Consensus 27 ~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~ 106 (511)
T 3e7w_A 27 LTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHA 106 (511)
T ss_dssp EEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEES
T ss_pred eeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEec
Confidence 69999999999999999885 7899999999999999999999999999999999999999999999999999999997
Q ss_pred hhhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCC
Q 010114 79 DFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGT 158 (518)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt 158 (518)
+.... .. . . .....+.+.++....... ........++++++++|||||
T Consensus 107 ~~~~~-----~~----~---~----------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~i~~TSGT 154 (511)
T 3e7w_A 107 AGLSI-----DA----V---G----------------QQIQTVSAEELLENEGGS----VSQDQWVKEHETFYIIYTSGS 154 (511)
T ss_dssp SSCCT-----TC----C---C----------------CSSCEEEHHHHHTSCSCC----CCGGGSCCTTSEEEEEEECCT
T ss_pred ccccc-----hh----c---c----------------cccceecHhhhhccccCC----ccccccCCCCCeEEEEECCCC
Confidence 53210 00 0 0 001122344443322210 111222456899999999999
Q ss_pred CCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCC--CChhHHHHHHHHcC
Q 010114 159 TGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAG 236 (518)
Q Consensus 159 TG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~ 236 (518)
||.||+|+++|.++...+......+++.++|++++.+|++|.+++..++.++..|+++++.+.. .++..+++.+++++
T Consensus 155 TG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~ 234 (511)
T 3e7w_A 155 TGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSG 234 (511)
T ss_dssp TSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHC
T ss_pred CCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcC
Confidence 9999999999999999988887888899999999999999999988899999999999987643 46788999999999
Q ss_pred ccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCC----CC
Q 010114 237 VTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL----QP 312 (518)
Q Consensus 237 ~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~----~~ 312 (518)
+|++.++|+++..++.........++++|.++++||++++++.+++.+.++++++++.||+||+++.++..... ..
T Consensus 235 ~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~ 314 (511)
T 3e7w_A 235 LNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISR 314 (511)
T ss_dssp CSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTT
T ss_pred CcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEecccccccc
Confidence 99999999999999988777777889999999999999999999999998889999999999998765433322 22
Q ss_pred cccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEe
Q 010114 313 QAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 391 (518)
Q Consensus 313 ~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~ 391 (518)
....++|.|.++++++|+|++|++++.|+ .|||++ ++.++.+| +.+++.+...+.. .++.+||+|||+|++
T Consensus 315 ~~~~~~G~~~~~~~~~i~d~~g~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~f~~---~~g~~~~~TGDlg~~- 386 (511)
T 3e7w_A 315 SESLPVGFAKPDMNIFIMDEEGQPLPEGE--KGEIVIAGPSVSRGY--LGEPELTEKAFFS---HEGQWAYRTGDAGFI- 386 (511)
T ss_dssp CSSCCCBEECTTCEEEEECTTSCBCCTTC--CEEEEEESTTSCCCB--TTCHHHHHHHEEE---SSSSEEEEEEEEEEE-
T ss_pred CCcCCCcceeCCCEEEEECCCCCCCCCCC--ceEEEEecCccChhh--CCCcccchhhhcC---CCCCEEEeCCCeEEc-
Confidence 34567999999999999999999999999 699999 77777654 3344444433322 245668999999999
Q ss_pred cCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHH
Q 010114 392 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKA 471 (518)
Q Consensus 392 ~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 471 (518)
+||+++++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..+ +.++++++++++...+..++.+.++++
T Consensus 387 ~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~vv~~~~~~~~~~~~~~~l~~~ 464 (511)
T 3e7w_A 387 QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVR-QSQYVRSAVVIPYQPNGTV-EYLIAAIVPEEHEFEKEFQLTSAIKKE 464 (511)
T ss_dssp ETTEEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEECSSSSC-CEEEEEEEECCCCCSSHHHHHHHHHHH
T ss_pred cCCeEEEEccccCEEEECCEEeCHHHHHHHHH-hCCCcceEEEEEEcCCCCc-eEEEEEEEeccccccchhhHHHHHHHH
Confidence 59999999999999999999999999999998 9999999999999988777 899999999887666677788889999
Q ss_pred HHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcccc
Q 010114 472 IQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 513 (518)
Q Consensus 472 ~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~ 513 (518)
+.++|+.|++|..++++++||+|++||++|++|++.+.++-.
T Consensus 465 l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~~ 506 (511)
T 3e7w_A 465 LAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRSH 506 (511)
T ss_dssp HHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHHT
T ss_pred HHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhcc
Confidence 999999999999999999999999999999999999986543
No 9
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=2.2e-73 Score=599.63 Aligned_cols=495 Identities=24% Similarity=0.372 Sum_probs=390.9
Q ss_pred CCHHHHHHHHHHHHHHHh-hc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114 1 MTYKELREQVMLVANALD-TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ 78 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~-~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~ 78 (518)
+||+||.++++++|+.|+ +. +++||+|+++++|++|+++++|||+++|++++|+++.++++++.+++++++++++|++
T Consensus 114 ~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~ 193 (663)
T 1ry2_A 114 ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITT 193 (663)
T ss_dssp EEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEE
T ss_pred EEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEc
Confidence 599999999999999999 88 9999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhccCCCCcc---hhhhhccCCC-ceeecccccc--CCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEE
Q 010114 79 DFILRGGRKFPL---YSKVLGAAPL-KAIVLPAIGN--DVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI 152 (518)
Q Consensus 79 ~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 152 (518)
+......+.... +.......+. ..++...... .... .......|.+++..... ...+....++++++|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i 267 (663)
T 1ry2_A 194 DESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAF-HAPRDLDWATEKKKYKT-----YYPCTPVDSEDPLFL 267 (663)
T ss_dssp SBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCC-CSSSEEEHHHHHTTSCS-----CCCCCCEETTSCCEE
T ss_pred cccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCcccc-CCCccccHHHHHhhcCC-----CCCccccCCCCceEE
Confidence 764332222222 2222222221 1222111110 0100 01123456666553321 122233457899999
Q ss_pred EeccCCCCCCceEEeccchhHHHhh-hccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCC---CChhH
Q 010114 153 LFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---PLERS 227 (518)
Q Consensus 153 ~~TSGtTG~pK~v~~s~~~~~~~~~-~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~---~~~~~ 227 (518)
+|||||||.||||+++|.+++.+.. .....+++.++|++++..|++|++|... ++.++..|+++++.+.. .++..
T Consensus 268 lyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~ 347 (663)
T 1ry2_A 268 LYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSR 347 (663)
T ss_dssp EEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTH
T ss_pred EeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHH
Confidence 9999999999999999999876654 3334578899999999999999999854 88999999999998753 46789
Q ss_pred HHHHHHHcCccEEEechHHHHHHHhccc--CCCCCccchhhhhccCCCCCchhhhHhhhccc--cCceecccccccccee
Q 010114 228 FGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAIIESCGGTELSSA 303 (518)
Q Consensus 228 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~--~~~i~~~yg~tE~~~~ 303 (518)
+++.|+++++|+++++|++++.|.+... ....++++||.++++||++++++.+++.+.++ .+++++.||+||+++.
T Consensus 348 ~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~ 427 (663)
T 1ry2_A 348 YWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSH 427 (663)
T ss_dssp HHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSC
T ss_pred HHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCe
Confidence 9999999999999999999999988754 34567899999999999999999999988764 3789999999999876
Q ss_pred EeecCC--CCCcccCCCCcccccccEEEECC-CCCCCCC-CCCeeeeeee-cc--cccCCccccccccccceeeeCCCCC
Q 010114 304 YIQGSL--LQPQAFGAFSTATMTAGLVILDE-CGVPYPD-DQPCVGEVGL-FP--LYLGASDRLLNADHEEVYFRGMPMY 376 (518)
Q Consensus 304 ~~~~~~--~~~~~~~~~g~~~~~~~~~i~~~-~g~~~~~-~~~~~Gel~v-~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (518)
++.... ......+++|.|++|++++|+|+ +|++++. |+ .|||++ ++ +++.+| +.+++.+...+ ..
T Consensus 428 ~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~--~Gel~i~g~~p~~~~gy--~~~~~~~~~~~----~~ 499 (663)
T 1ry2_A 428 LVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHA--EGVLAVKAAWPSFARTI--WKNHDRYLDTY----LN 499 (663)
T ss_dssp SEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSC--EEEEEESSCCTTSCCEE--TTCHHHHHHHH----TS
T ss_pred eeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCc--ceEEEEecCCCchhccc--ccChHHHHHhh----hc
Confidence 554432 23456789999999999999998 9999988 77 699999 53 444432 12221111111 11
Q ss_pred CCceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCC
Q 010114 377 KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG 456 (518)
Q Consensus 377 ~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~ 456 (518)
..++||+|||+|++|+||+++++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.+++||+++++
T Consensus 500 ~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~~~~~g-~~~~a~Vv~~~~ 577 (663)
T 1ry2_A 500 PYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAII-EDPIVAECAVVGFNDDLTG-QAVAAFVVLKNK 577 (663)
T ss_dssp SSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHH-SSTTEEEEEEECCCCCTTS-CCCEEEEEEC--
T ss_pred CCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHH-hCCCcceEEEEEEecCCCC-eEEEEEEEEcCC
Confidence 23569999999999999999999999999999999999999999997 9999999999999988888 889999999875
Q ss_pred CC---CChh---HHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114 457 FT---SQPD---KLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 511 (518)
Q Consensus 457 ~~---~~~~---~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~ 511 (518)
.. ...+ ++.+.++++++++|++|++|..|+++++||+|++||++|+.|++++.++
T Consensus 578 ~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 578 SSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp ----------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred CccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC
Confidence 43 2122 5677888889999999999999999999999999999999999998775
No 10
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=7.6e-74 Score=588.65 Aligned_cols=474 Identities=18% Similarity=0.192 Sum_probs=394.0
Q ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++.
T Consensus 27 ~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~ 106 (512)
T 3fce_A 27 ITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSAT 106 (512)
T ss_dssp EEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESS
T ss_pred EEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecC
Confidence 59999999999999999999 99999999999999999999999999999999999999999999999999999999975
Q ss_pred hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114 80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT 159 (518)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT 159 (518)
.... . .... .... ...+.++...... ..........++++++++||||||
T Consensus 107 ~~~~-----~-------~~~~--~~~~-------------~~~~~~~~~~~~~---~~~~~~~~~~~~d~a~i~~TSGTT 156 (512)
T 3fce_A 107 AVTV-----T-------DLPV--RIVS-------------EDNLKDIFFTHKG---NTPNPEHAVKGDENFYIIYTSGST 156 (512)
T ss_dssp CCCS-----S-------CCSS--EEEE-------------THHHHHHHHHTTT---CCCCGGGSCCTTSEEEEEEECC--
T ss_pred cccc-----c-------cccc--ceec-------------hhhhhhhcccccc---cCCCccccCCCCCeEEEEECCCCC
Confidence 3210 0 0000 0000 0011121111111 011112234579999999999999
Q ss_pred CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCC--CChhHHHHHHHHcCc
Q 010114 160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGV 237 (518)
Q Consensus 160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~~ 237 (518)
|.||||+++|.++...+......+++.++|++++.+|++|.+++..++.+++.|+++++.+.. .++..+++.++++++
T Consensus 157 G~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~ 236 (512)
T 3fce_A 157 GNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDI 236 (512)
T ss_dssp --CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCC
T ss_pred CCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCC
Confidence 999999999999999988888888999999999999999999998899999999999998753 467899999999999
Q ss_pred cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC----Cc
Q 010114 238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----PQ 313 (518)
Q Consensus 238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~----~~ 313 (518)
|++.++|++++.++........+++++|.++++||++++++.+++.+.++++++++.||+||+++.++...... ..
T Consensus 237 t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~ 316 (512)
T 3fce_A 237 QVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQY 316 (512)
T ss_dssp CEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHC
T ss_pred cEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccccc
Confidence 99999999999999887777788999999999999999999999999988899999999999987654333221 23
Q ss_pred ccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEec
Q 010114 314 AFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV 392 (518)
Q Consensus 314 ~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~ 392 (518)
...++|.|.++++++|+|++|++++.|+ .|||++ ++.++.+| +.+++.+...+. ..++++||+|||+|++ +
T Consensus 317 ~~~~~G~~~~~~~~~i~d~~g~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~f~---~~~~~~~~~TGDlg~~-~ 388 (512)
T 3fce_A 317 KSLPVGYCKSDCRLLIMKEDGTIAPDGE--KGEIVIVGPSVSVGY--LGSPELTEKAFT---MIDGERAYKTGDAGYV-E 388 (512)
T ss_dssp SSCCCEEECTTCEEEEECSSSCBCCTTS--CEEEEEESTTSCSCB--TTCHHHHHHHEE---EETTEEEEEEEEEEEE-E
T ss_pred CCCccccccCCcEEEEECCCCCCCCCCC--eEEEEEeccccChhh--cCCchhhhhccc---cCCCCEEEeCCceEEe-c
Confidence 4568999999999999999999999999 699999 77777664 334444443332 1357789999999999 7
Q ss_pred CceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHH
Q 010114 393 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI 472 (518)
Q Consensus 393 ~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 472 (518)
||++++.||.||+||++|++|+|.+||++|. +||+|.+++|++.++...+ +.++++|++.++...+..++.+.+++++
T Consensus 389 dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~vv~~~~~~~~~~~~~~~l~~~l 466 (512)
T 3fce_A 389 NGLLFYNGRLDFQIKLHGYRMELEEIEHHLR-ACSYVEGAVIVPIKKGEKY-DYLLAVVVPGEHSFEKEFKLTSAIKKEL 466 (512)
T ss_dssp TTEEEEEEEGGGCEEETTEEECHHHHHHHHH-HSTTEEEEEEEEEEETTEE-EEEEEEEEECSCCCSSHHHHHHHHHHHH
T ss_pred CCEEEEecccCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEecCCCc-eEEEEEEecCCccccchhhhHHHHHHHH
Confidence 9999999999999999999999999999997 9999999999999887777 8899999998776666667888899999
Q ss_pred HhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhccccc
Q 010114 473 QSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSV 514 (518)
Q Consensus 473 ~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~~ 514 (518)
+++|+.|++|..++++++||+|++||++|++|++.++++-..
T Consensus 467 ~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~~ 508 (512)
T 3fce_A 467 NERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEHH 508 (512)
T ss_dssp HTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC----
T ss_pred HhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhcccc
Confidence 999999999999999999999999999999999999876544
No 11
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.4e-73 Score=589.43 Aligned_cols=478 Identities=19% Similarity=0.211 Sum_probs=387.6
Q ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++
T Consensus 51 ~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 130 (539)
T 1mdb_A 51 WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPD 130 (539)
T ss_dssp EEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEES
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEecc
Confidence 59999999999999999999 99999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhccCCCCcchhhhhccCCCc-eeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCC
Q 010114 80 FILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGT 158 (518)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt 158 (518)
..... ........+....+.. .++... .. ..+.++...... ........++++++++|||||
T Consensus 131 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~---------~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGT 193 (539)
T 1mdb_A 131 AYSGF-DYRSLARQVQSKLPTLKNIIVAG--EA---------EEFLPLEDLHTE-----PVKLPEVKSSDVAFLQLSGGS 193 (539)
T ss_dssp EETTE-EHHHHHHHHHHHCTTCCCEEEES--CC---------TTSEEGGGCCCC-----CCCCCCCCTTSEEEEEECCCS
T ss_pred ccccc-cHHHHHHHHHhcCCCccEEEEcC--Cc---------cchhhhhhcccc-----ccccCCCCcCceEEEEeCCCc
Confidence 42100 0000111222211111 111111 00 012222221111 111123456899999999999
Q ss_pred CCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhH--HHHHhhhcCcEEEEecCCCChhHHHHHHHHcC
Q 010114 159 TGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFLNGATLALYQGSPLERSFGKFVQDAG 236 (518)
Q Consensus 159 TG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~--~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~ 236 (518)
||.||||+++|++++..+......+++.++|++++.+|++|.+++. .++.+++.|+++++.+ ..++..+++.|++++
T Consensus 194 TG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~ 272 (539)
T 1mdb_A 194 TGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP-SPSPDDAFPLIEREK 272 (539)
T ss_dssp SSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECC-CCCHHHHHHHHHHcC
Confidence 9999999999999999888777778899999999999999999986 4889999999999987 568899999999999
Q ss_pred ccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccC
Q 010114 237 VTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFG 316 (518)
Q Consensus 237 ~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~ 316 (518)
+|++.++|+++..+++.......++++||.+++|||++++++.+++.+.+ ++++++.||+||++..+...........+
T Consensus 273 ~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 351 (539)
T 1mdb_A 273 VTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAEGLVNYTRLDDPEEIIVN 351 (539)
T ss_dssp CSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECTTSCEEECCTTSCHHHHHH
T ss_pred CeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEEEEEcCCCCcccccCCCCcHHhcCC
Confidence 99999999999999987666667889999999999999999999998776 68899999999976443322211223457
Q ss_pred CCCcccccc-cEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCc
Q 010114 317 AFSTATMTA-GLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGG 394 (518)
Q Consensus 317 ~~g~~~~~~-~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g 394 (518)
++|+|+++. +++|+|++|++++.|+ .|||++ ++.++.+|. .+++.+...| ..++||+|||+|++|+||
T Consensus 352 ~~G~p~~~~~~~~i~d~~~~~~~~g~--~GEl~v~g~~v~~GY~--~~~~~t~~~f------~~~g~~~TGDlg~~~~dG 421 (539)
T 1mdb_A 352 TQGKPMSPYDESRVWDDHDRDVKPGE--TGHLLTRGPYTIRGYY--KAEEHNAASF------TEDGFYRTGDIVRLTRDG 421 (539)
T ss_dssp CCCEESSTTCEEEEECTTSCBCCTTC--CEEEEEECTTSCSSCT--TCHHHHHHHB------CTTSCEEEEEEEEECTTS
T ss_pred CCCcccCCCceEEEECCCCCCCcCCC--cceEEeeCcccchhhc--CChhhhhhhc------cCCCCeecCceEEECCCC
Confidence 899999764 7999999999999999 699999 777776542 3333333333 235799999999999999
Q ss_pred eEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHh
Q 010114 395 YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS 474 (518)
Q Consensus 395 ~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~ 474 (518)
+|++.||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.++++|++++ ...+.+++.+. +.+
T Consensus 422 ~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g-~~~~a~vv~~~-~~~~~~~l~~~----l~~ 494 (539)
T 1mdb_A 422 YIVVEGRAKDQINRGGEKVAAEEVENHLL-AHPAVHDAAMVSMPDQFLG-ERSCVFIIPRD-EAPKAAELKAF----LRE 494 (539)
T ss_dssp CEEEEEEGGGCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEESS-SCCCHHHHHHH----HHH
T ss_pred cEEEeccccceEEECCEEECHHHHHHHHH-hCCCcceEEEEeccccccC-ceEEEEEEECC-CCCCHHHHHHH----HHh
Confidence 99999999999999999999999999997 9999999999999988888 89999999874 34455555555 556
Q ss_pred c-cCCccccceEEEecCCCCCCCchhHHHHHHHHHhccccc
Q 010114 475 K-LNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSV 514 (518)
Q Consensus 475 ~-l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~~ 514 (518)
+ |+.|++|..|+++++||+|++||++|++|++++.++++.
T Consensus 495 ~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~ 535 (539)
T 1mdb_A 495 RGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLA 535 (539)
T ss_dssp TTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHHHT
T ss_pred CCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHHhc
Confidence 6 999999999999999999999999999999999988764
No 12
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1.3e-73 Score=590.00 Aligned_cols=477 Identities=22% Similarity=0.233 Sum_probs=355.8
Q ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++
T Consensus 48 ~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 127 (541)
T 1v25_A 48 TTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDP 127 (541)
T ss_dssp EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECG
T ss_pred ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEECh
Confidence 59999999999999999999 99999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhccCCCCcchhhhhccCCCc-eeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCC
Q 010114 80 FILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGT 158 (518)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt 158 (518)
... ..+.......+.. .++.... .. ......+.+++..... .....++++++++|||||
T Consensus 128 ~~~------~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~--------~~~~~~~~~a~i~~TSGT 187 (541)
T 1v25_A 128 NLL------PLVEAIRGELKTVQHFVVMDE-KA-----PEGYLAYEEALGEEAD--------PVRVPERAACGMAYTTGT 187 (541)
T ss_dssp GGH------HHHHHHGGGCSSCCEEEESSS-CC-----CTTCEEHHHHCCSCCC--------CCCCCTTSEEEEEEECSS
T ss_pred hHH------HHHHHHHhhCCCccEEEEecC-CC-----CcccccHHHHhhccCC--------cccCCCCCcEEEEECCCC
Confidence 543 2222222222211 1111111 00 0123355555443221 022356899999999999
Q ss_pred CCCCceEEeccchhHHHhhh--ccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcC
Q 010114 159 TGEPKAIPWTQLSSIRCTAE--GWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAG 236 (518)
Q Consensus 159 TG~pK~v~~s~~~~~~~~~~--~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~ 236 (518)
||.||||+++|++++.+... ....+++.++|++++.+|++|.+++..++.+++.|+++++.+...++..+++.+++++
T Consensus 188 TG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~ 267 (541)
T 1v25_A 188 TGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEG 267 (541)
T ss_dssp SSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTT
T ss_pred CCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcC
Confidence 99999999999999877654 2345678899999999999999998777889999999999876678899999999999
Q ss_pred ccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC-----
Q 010114 237 VTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----- 311 (518)
Q Consensus 237 ~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~----- 311 (518)
+|+++++|+++..|++.......+++++|.+++|||++++++.+++ +.+ ++++++.||+||++++++......
T Consensus 268 ~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 345 (541)
T 1v25_A 268 VTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQGYGLTETSPVVVQNFVKSHLESL 345 (541)
T ss_dssp CCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEEEECGGGSSEEEECCCCGGGTTS
T ss_pred eeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCceeecccccccccceeccccccccccc
Confidence 9999999999999988765556678999999999999999999988 454 788999999999987766553321
Q ss_pred -----CcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceecccc
Q 010114 312 -----PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHG 385 (518)
Q Consensus 312 -----~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TG 385 (518)
....+++|.|+++++++|+|++|++++.+....|||++ ++.++.+|. .+++.+...+ ..++||+||
T Consensus 346 ~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~~v~~GY~--~~p~~t~~~f------~~~g~~~TG 417 (541)
T 1v25_A 346 SEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYY--GNEEATRSAL------TPDGFFRTG 417 (541)
T ss_dssp CHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCB--TCHHHHHTTB------CTTSCEEEE
T ss_pred CccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCcceEEEEeCcchhcccc--CChhhhhhhc------cCCCCeEcC
Confidence 12357899999999999999999999853111699999 777776642 3333333333 235799999
Q ss_pred ceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHH
Q 010114 386 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLK 465 (518)
Q Consensus 386 D~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~ 465 (518)
|+|++|+||+++++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..+ +.++++|++. +...+.+++.
T Consensus 418 Dlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~~-~~~~a~vv~~-~~~~~~~~l~ 494 (541)
T 1v25_A 418 DIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALM-GHPKVKEAAVVAIPHPKWQ-ERPLAVVVPR-GEKPTPEELN 494 (541)
T ss_dssp EEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC-----------CEEEEECSSSS-EEEEECC--------------
T ss_pred CEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHH-hCCCceEEEEEEecCCCcC-ceEEEEEEEC-CCCCCHHHHH
Confidence 99999999999999999999999999999999999997 8999999999999998888 8899999876 3233444444
Q ss_pred HHHHHHHHh-ccCCccccceEEEecCCCCCCCchhHHHHHHHHHhccccc
Q 010114 466 MIFSKAIQS-KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSV 514 (518)
Q Consensus 466 ~~~~~~~~~-~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~~ 514 (518)
++ +.+ +|+.|++|..++++++||+|++||++|++|++++.+++++
T Consensus 495 ~~----~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~ 540 (541)
T 1v25_A 495 EH----LLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYYGG 540 (541)
T ss_dssp ----------CCCTTTSCSBC--------------CCTTHHHHSTTSSCC
T ss_pred HH----HHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHhhCC
Confidence 44 556 8999999999999999999999999999999999887764
No 13
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=5.3e-74 Score=594.37 Aligned_cols=486 Identities=17% Similarity=0.194 Sum_probs=297.0
Q ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++
T Consensus 51 ~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 130 (550)
T 3rix_A 51 ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSK 130 (550)
T ss_dssp EEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECG
T ss_pred eEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcH
Confidence 59999999999999999999 99999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCC-C-CCCCCCCCCCCCEEEEEeccC
Q 010114 80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR-P-NYYSPVYNPVDAVVNILFSSG 157 (518)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~~TSG 157 (518)
... ..........+....++...... ......++.+++........ . ...+.....++++++++||||
T Consensus 131 ~~~------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSG 200 (550)
T 3rix_A 131 KGL------QKILNVQKKLPIIQKIIIMDSKT----DYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSG 200 (550)
T ss_dssp GGH------HHHHHHHHHCTTCCEEEETTCSS----CBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC--
T ss_pred HHH------HHHHHHHhhCCCcceEEEEcCCc----cccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCC
Confidence 543 22223332222222222111110 11233445555443222111 0 111112234578999999999
Q ss_pred CCCCCceEEeccchhHHHhhhcccc---ccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHH
Q 010114 158 TTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQD 234 (518)
Q Consensus 158 tTG~pK~v~~s~~~~~~~~~~~~~~---~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~ 234 (518)
|||.||||+++|.+++.++...... .++.++|++++.+|++|.+++...+.+++.|+++++.+ ..++..+++.|++
T Consensus 201 TTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~ 279 (550)
T 3rix_A 201 STGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-RFEEELFLRSLQD 279 (550)
T ss_dssp ---CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHH
T ss_pred cccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHH
Confidence 9999999999999998877655544 46788999999999999999988889999999999986 5778999999999
Q ss_pred cCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcc
Q 010114 235 AGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA 314 (518)
Q Consensus 235 ~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~ 314 (518)
+++|+++++|+++..+++.....+.++++||.+++|||++++++.+++.+.++...+++.||+||+++.++.... ....
T Consensus 280 ~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~-~~~~ 358 (550)
T 3rix_A 280 YKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPE-GDDK 358 (550)
T ss_dssp TTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCT-TCCC
T ss_pred cCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCC-CCCC
Confidence 999999999999999999887777889999999999999999999999988865569999999999987665554 3456
Q ss_pred cCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEec
Q 010114 315 FGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV 392 (518)
Q Consensus 315 ~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~ 392 (518)
.+++|.|+++++++|+| ++|++++.|+ .|||++ ++.++.+| +.+++.+...+ ..++||+|||+|++|+
T Consensus 359 ~~~vG~~~~~~~~~i~d~~~~~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~~------~~~g~~~TGDl~~~~~ 428 (550)
T 3rix_A 359 PGAVGKVVPFFEAKVVDLDTGKTLGVNQ--RGELCVRGPMIMSGY--VNNPEATNALI------DKDGWLHSGDIAYWDE 428 (550)
T ss_dssp TTEEEEECTTCEEEEECTTTCCBCCTTC--CEEEEEESTTSCSEE--TTCHHHHHHHB------CTTSCEEEEEEEEECT
T ss_pred CCCcccccCCcEEEEEeCCCCcCCCCCC--CeEEEEeCCCcchhh--cCChhhhhhhc------CCCCCeecCcEEEEeC
Confidence 78999999999999999 6799999999 699999 77776653 22333333333 3567999999999999
Q ss_pred CceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHH
Q 010114 393 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI 472 (518)
Q Consensus 393 ~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 472 (518)
||+++++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.++++|+++++...+.+++.++ +
T Consensus 429 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~l~~~----~ 502 (550)
T 3rix_A 429 DEHFFIVDRLKSLIKYKGYQVAPAELESILL-QHPNIFDAGVAGLPDDDAG-ELPAAVVVLEHGKTMTEKEIVDY----V 502 (550)
T ss_dssp TCCEEEC-------------------------------------------------------------------------
T ss_pred CceEEEEecchheeEECCEEECHHHHHHHHH-hCCCcceEEEEEeecCCCC-ceEEEEEEecCCCCCCHHHHHHH----H
Confidence 9999999999999999999999999999997 9999999999999998888 89999999887666666666655 5
Q ss_pred HhccCCcccc-ceEEEecCCCCCCCchhHHHHHHHHHhccccc
Q 010114 473 QSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQIKHELSV 514 (518)
Q Consensus 473 ~~~l~~~~~p-~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~~ 514 (518)
.+++++++.| ..|+++++||+|++||++|++|++++.+..+.
T Consensus 503 ~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~ 545 (550)
T 3rix_A 503 ASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKKG 545 (550)
T ss_dssp -------------------------------------------
T ss_pred HHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhccc
Confidence 5677787666 57999999999999999999999999776544
No 14
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=4.1e-72 Score=574.35 Aligned_cols=460 Identities=20% Similarity=0.176 Sum_probs=373.8
Q ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEe--
Q 010114 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT-- 77 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~-- 77 (518)
+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus 30 ~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~ 109 (504)
T 1t5h_X 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAV 109 (504)
T ss_dssp EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC
T ss_pred eEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEec
Confidence 59999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccC
Q 010114 78 QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG 157 (518)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG 157 (518)
++... ..+........+ +.+.+++..................++++++++||||
T Consensus 110 ~~~~~---------~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSG 163 (504)
T 1t5h_X 110 GRQVA---------DAIFQSGSGARI-----------------IFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSG 163 (504)
T ss_dssp --CHH---------HHHHHHCCCCEE-----------------EEGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC
T ss_pred chhhh---------hhhhhcccccee-----------------EEecchhhcCcccccCCccCCCCCCCCCeEEEEeCCC
Confidence 65321 111011111111 1222332221000000011112345689999999999
Q ss_pred CCCCCceEEeccchhHHHhhhccccccC--CCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHH
Q 010114 158 TTGEPKAIPWTQLSSIRCTAEGWAHIDL--KVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQD 234 (518)
Q Consensus 158 tTG~pK~v~~s~~~~~~~~~~~~~~~~~--~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~ 234 (518)
|||.||||+++|+++...+......+++ .++|++++.+|++|.+++.. ++.++..|+++++.+ ..++..+++.|++
T Consensus 164 TTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~ 242 (504)
T 1t5h_X 164 TTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE-EFRPVDALQLVQQ 242 (504)
T ss_dssp ---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECS-SCCHHHHHHHHHH
T ss_pred CCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCC-CCCHHHHHHHHHH
Confidence 9999999999999999888776666777 88899999999999999854 889999999999987 4778999999999
Q ss_pred cCccEEEechHHHHHHHhccc--CCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCC
Q 010114 235 AGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQP 312 (518)
Q Consensus 235 ~~~t~l~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~ 312 (518)
+++|+++++|++++.|++... ....++++||.+++|||++++++.+.+.+.+ ++++++.||+||++..+... .
T Consensus 243 ~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~----~ 317 (504)
T 1t5h_X 243 EQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEAMNSLYMR----Q 317 (504)
T ss_dssp HTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEEEEEETTTEEEEEEE----S
T ss_pred hCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceeeeecccccccccccc----C
Confidence 999999999999999988652 2455789999999999999999999998877 57899999999994332221 2
Q ss_pred cccCCCCcccccccEEEECCCC---CCCCCCCCeeeeeeec-c-cccCCccccccccccceeeeCCCCCCCceeccccce
Q 010114 313 QAFGAFSTATMTAGLVILDECG---VPYPDDQPCVGEVGLF-P-LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDI 387 (518)
Q Consensus 313 ~~~~~~g~~~~~~~~~i~~~~g---~~~~~~~~~~Gel~v~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~ 387 (518)
...+++|.|.++++++++|+++ ++++.|+ .|||+++ . ..+.+| +.+++.+...+. ++||+|||+
T Consensus 318 ~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~--~GEl~v~gg~~~~~GY--~~~~~~t~~~f~-------~g~~~TGDl 386 (504)
T 1t5h_X 318 PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGE--EGELIVAASDSAFVGY--LNQPQATAEKLQ-------DGWYRTSDV 386 (504)
T ss_dssp CSSSSEEBCCTTCCEEEECTTSCTTCBCCTTC--CEEEEEECCTTSCCCB--TTCHHHHHHHEE-------TTEEEEEEE
T ss_pred CCCCccccCCCCCceeEEeccCCCCCcCCCCC--cceEEEeCCceeecee--cCCchhhhhhhc-------CCccccCcE
Confidence 4457889999999999999887 8999998 6999994 3 443332 333333333332 469999999
Q ss_pred EEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHH
Q 010114 388 IKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMI 467 (518)
Q Consensus 388 ~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~ 467 (518)
|++|+||+++++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.++++|+++++...+.+++.++
T Consensus 387 g~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~l~~~ 464 (504)
T 1t5h_X 387 AVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG-TAPGVTEVVVIGLADQRWG-QSVTACVVPRLGETLSADALDTF 464 (504)
T ss_dssp EEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEECSSSS-EEEEEEEEECTTCCCCHHHHHHH
T ss_pred EEECCCceEEEeCcccCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEeecCCCC-cEEEEEEEecCCcCcCHHHHHHH
Confidence 999999999999999999999999999999999997 9999999999999998888 89999999987766666666555
Q ss_pred HHHHHHh-ccCCccccceEEEecCCCCCCCchhHHHHHHHHHh
Q 010114 468 FSKAIQS-KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIK 509 (518)
Q Consensus 468 ~~~~~~~-~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~ 509 (518)
+++ +|+.|++|+.|+++++||+|++||++|++|+++++
T Consensus 465 ----~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 465 ----CRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp ----HHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred ----HhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 666 89999999999999999999999999999999875
No 15
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=2.6e-71 Score=575.19 Aligned_cols=475 Identities=23% Similarity=0.286 Sum_probs=387.9
Q ss_pred CCHHHHHHHHHHHHHHHhhc--cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114 1 MTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ 78 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~--v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~ 78 (518)
+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++
T Consensus 74 ~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~ 153 (570)
T 3c5e_A 74 WNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAG 153 (570)
T ss_dssp EEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEE
T ss_pred EeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEec
Confidence 59999999999999999986 9999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhccCCCCcchhhhhccCCCc-eeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccC
Q 010114 79 DFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG 157 (518)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG 157 (518)
+... ..+..+....+.. .++... ... ..+...+.+++..... ........++++++|+||||
T Consensus 154 ~~~~------~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSG 216 (570)
T 3c5e_A 154 DEVI------QEVDTVASECPSLRIKLLVS-EKS-----CDGWLNFKKLLNEAST-----THHCVETGSQEASAIYFTSG 216 (570)
T ss_dssp TTTH------HHHHHHGGGCTTCCEEEEES-SSC-----CTTSEEHHHHHHHSCS-----CCCCCCCBTTSEEEEEECCC
T ss_pred hHHH------HHHHHHhhcCCceeEEEEec-ccC-----ccccccHHHHhhcccc-----cccccCCCCCCcEEEEECCC
Confidence 7532 2222222222221 111111 100 1123345555543322 11122345689999999999
Q ss_pred CCCCCceEEeccchhHH--HhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecC-CCChhHHHHHHH
Q 010114 158 TTGEPKAIPWTQLSSIR--CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQG-SPLERSFGKFVQ 233 (518)
Q Consensus 158 tTG~pK~v~~s~~~~~~--~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~-~~~~~~~~~~i~ 233 (518)
|||.||||+++|. ++. ..... ..+++.++|++++.+|++|.+++.. ++.++..|+++++.+. .+++..+++.|+
T Consensus 217 TTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~ 294 (570)
T 3c5e_A 217 TSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLS 294 (570)
T ss_dssp SSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHH
T ss_pred CCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHH
Confidence 9999999999999 554 33333 5678899999999999999999875 8899999999999864 567899999999
Q ss_pred HcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCc
Q 010114 234 DAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQ 313 (518)
Q Consensus 234 ~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~ 313 (518)
++++|+++++|++++.|++.. ....+++++|.++++||++++++.+.+.+.+ ++++++.||+||++..+.... ....
T Consensus 295 ~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-~~~~ 371 (570)
T 3c5e_A 295 SYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVSK-TMKI 371 (570)
T ss_dssp HSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCT-TSCC
T ss_pred HhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecCc-cccc
Confidence 999999999999999998763 3445688999999999999999999998776 688999999999987654433 2345
Q ss_pred ccCCCCcccccccEEEECCCCCCCCCCCCeeeeeeec------ccccCCccccccccccceeeeCCCCCCCceeccccce
Q 010114 314 AFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF------PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDI 387 (518)
Q Consensus 314 ~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~ 387 (518)
..+++|.|+++++++|+|++|++++.|+ .|||+++ +.++.+| +.+++.+...+. ++||+|||+
T Consensus 372 ~~~~vG~p~~~~~v~i~d~~g~~~~~G~--~GEl~v~~~~~~g~~v~~GY--~~~~~~t~~~f~-------~~~~~TGDl 440 (570)
T 3c5e_A 372 KPGYMGTAASCYDVQIIDDKGNVLPPGT--EGDIGIRVKPIRPIGIFSGY--VDNPDKTAANIR-------GDFWLLGDR 440 (570)
T ss_dssp CTTCCCEECTTCCEEEECTTSCBCCTTC--CEEEEEECSSBCCTTCCCEE--TTCHHHHHHTEE-------TTEEEEEEE
T ss_pred CCCcccccCCCceEEEECCCCCCCCCCC--CCeeEEeccCCCCchhhccc--cCChhHhhhhhc-------CCcccccee
Confidence 6689999999999999999999999999 6999994 3333332 223333333332 469999999
Q ss_pred EEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCC-CChhHHHH
Q 010114 388 IKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT-SQPDKLKM 466 (518)
Q Consensus 388 ~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~-~~~~~l~~ 466 (518)
|++|+||+|+++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.+.++|++.++.. .+.+.+.+
T Consensus 441 g~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~~~~~ 518 (570)
T 3c5e_A 441 GIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALM-EHPAVVETAVISSPDPVRG-EVVKAFVVLASQFLSHDPEQLTK 518 (570)
T ss_dssp EEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECGGGTTSCHHHHHH
T ss_pred EEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEeeeCCCCC-eEEEEEEEECCcccCcchHHHHH
Confidence 999999999999999999999999999999999998 9999999999999988877 89999999876432 34456777
Q ss_pred HHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhc
Q 010114 467 IFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH 510 (518)
Q Consensus 467 ~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~ 510 (518)
.++++++++|+.|++|..|+++++||+|++||++|++|++.+.+
T Consensus 519 ~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 562 (570)
T 3c5e_A 519 ELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWK 562 (570)
T ss_dssp HHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC
T ss_pred HHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHh
Confidence 88888999999999999999999999999999999999998864
No 16
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=2.3e-72 Score=579.12 Aligned_cols=474 Identities=16% Similarity=0.144 Sum_probs=379.0
Q ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++
T Consensus 30 ~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~ 109 (521)
T 3l8c_A 30 RTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIE 109 (521)
T ss_dssp EEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESS
T ss_pred ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecC
Confidence 59999999999999999999 99999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114 80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT 159 (518)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT 159 (518)
+....... . ....+.++...... ...........++++++++||||||
T Consensus 110 ~~~~~~~~-------------~-----------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~i~~TSGTT 157 (521)
T 3l8c_A 110 EFPLTIEG-------------I-----------------SLVSLSEIESAKLA--EMPYERTHSVKGDDNYYIIFTSGTT 157 (521)
T ss_dssp CCCSCCTT-------------S-----------------EEEEHHHHHHHHHH--TCCCCCSSCCCTTSEEEEEECCC--
T ss_pred cccccccc-------------C-----------------cccchhhhhhcccc--cCCcccCCCCCCCCcEEEEEcCCCC
Confidence 43211000 0 00111111110000 0001112234579999999999999
Q ss_pred CCCceEEeccchhHHHhhhcccc--ccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCC--CChhHHHHHHHHc
Q 010114 160 GEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDA 235 (518)
Q Consensus 160 G~pK~v~~s~~~~~~~~~~~~~~--~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~ 235 (518)
|.||||+++|.++++........ +.+.+++++++..|++|..++..++.++..|+++++.+.. .++..+++.++++
T Consensus 158 G~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~ 237 (521)
T 3l8c_A 158 GQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQL 237 (521)
T ss_dssp -CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHS
T ss_pred CCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHc
Confidence 99999999999999877655444 6778899999999999999988889999999999988753 3678999999999
Q ss_pred CccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC----
Q 010114 236 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ---- 311 (518)
Q Consensus 236 ~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~---- 311 (518)
++|++.++|+++..++........+++++|.++++|+++++++.+.+.+.++++++++.||+||+++.+.......
T Consensus 238 ~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 317 (521)
T 3l8c_A 238 PVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVD 317 (521)
T ss_dssp CCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHH
T ss_pred CCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccccc
Confidence 9999999999999998887767778999999999999999999999998988899999999999987654433221
Q ss_pred CcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEE
Q 010114 312 PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR 390 (518)
Q Consensus 312 ~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~ 390 (518)
.....++|+|+++++++|+|++|.+++.|+ .|||++ ++.++.+| +.+++.+...|.. .++++||+|||+|++
T Consensus 318 ~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~f~~---~~~~~~~~TGDlg~~ 390 (521)
T 3l8c_A 318 NYTRLPIGYPKPDSPTYIIDEDGKELSSGE--QGEIIVTGPAVSKGY--LNNPEKTAEAFFT---FKGQPAYHTGDIGSL 390 (521)
T ss_dssp HCSSCEEEEECTTSCEEEECTTSCBCCTTC--CEEEEEESTTSCSCB--TTCHHHHHHHEEE---ETTEEEEEEEEEEEE
T ss_pred CCCccccccccCCCEEEEECCCcCCCCCCC--ceEEEecccccChhh--cCCchHhhccCcC---CCCceeeeCCCEEEE
Confidence 234568999999999999999999999999 699999 77777664 2344444333321 256789999999999
Q ss_pred ecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCC---ChhHHHHH
Q 010114 391 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS---QPDKLKMI 467 (518)
Q Consensus 391 ~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~---~~~~l~~~ 467 (518)
|+||++++.||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..+.+.++++|+++++... ...++.+.
T Consensus 391 d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~ 469 (521)
T 3l8c_A 391 TEDNILLYGGRLDFQIKYAGYRIELEDVSQQLN-QSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKA 469 (521)
T ss_dssp CSSSCEEEEEEGGGBCC-----CBHHHHHHHHH-TSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHH
T ss_pred eCCCeEEEeCcccceEeECCEEeCHHHHHHHHH-cCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHH
Confidence 999999999999999999999999999999998 99999999999887654433789999999875322 22356778
Q ss_pred HHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhccccc
Q 010114 468 FSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSV 514 (518)
Q Consensus 468 ~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~~ 514 (518)
++++++++|+.|++|..|+++++||+|++||++|++|++++.++-..
T Consensus 470 l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~~ 516 (521)
T 3l8c_A 470 IKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNREGH 516 (521)
T ss_dssp HHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC-----
T ss_pred HHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCCcc
Confidence 88889999999999999999999999999999999999999876543
No 17
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=5.6e-73 Score=585.54 Aligned_cols=480 Identities=18% Similarity=0.203 Sum_probs=301.2
Q ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++
T Consensus 56 ~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~ 135 (544)
T 3o83_A 56 LSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSR 135 (544)
T ss_dssp EEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEET
T ss_pred eeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEcc
Confidence 69999999999999999999 99999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114 80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT 159 (518)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT 159 (518)
..... ........+.........++..... .....+.++...... .........++++++++||||||
T Consensus 136 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~~~~~d~a~i~~TSGTT 203 (544)
T 3o83_A 136 QHEVF-SNNQFIDSLHDVNLSPEIILMLNHQ-------ATDFGLLDWIETPAE----TFVDFSSTPADEVAFFQLSGGST 203 (544)
T ss_dssp TSGGG-SSSHHHHHHHHTTCCCSEEEEETCC-------TTSEEHHHHHHSCCS----SCCCCCCCCTTSEEEEEECCC--
T ss_pred ccccc-cHHHHHHHHhhcccCcceEEEecCC-------ccccchhhhhhcccc----cccccccCCccceEEEEECCCcc
Confidence 43210 0011122222222211111111100 011233333332221 11111334579999999999999
Q ss_pred CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhH--HHHHhhhcCcEEEEecCCCChhHHHHHHHHcCc
Q 010114 160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFLNGATLALYQGSPLERSFGKFVQDAGV 237 (518)
Q Consensus 160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~--~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~ 237 (518)
|.||||+++|.++..++......+++.++|++++.+|++|.+++. .++.++..|+++++.+ ..++..+++.|+++++
T Consensus 204 G~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~ 282 (544)
T 3o83_A 204 GTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP-NPEPLNCFSIIQRHQV 282 (544)
T ss_dssp CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SCCHHHHHHHHHHHTC
T ss_pred cCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC-CCCHHHHHHHHHHHCC
Confidence 999999999999999998888888999999999999999999886 3888999999999987 5688999999999999
Q ss_pred cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCC
Q 010114 238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA 317 (518)
Q Consensus 238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~ 317 (518)
|++.++|+++..+++.......++++||.+++||+++++++.+++.+.+ ++++++.||+||++..+............+
T Consensus 283 t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 361 (544)
T 3o83_A 283 NMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVFGMAEGLVNYTRLDDSDEQIFTT 361 (544)
T ss_dssp CEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEEEEECTTSCEEECCTTSCHHHHHHC
T ss_pred CEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEeeeccccccceeecCCCchhhccCC
Confidence 9999999999999988766667789999999999999999999998876 689999999999886554443333345678
Q ss_pred CCccc-ccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCce
Q 010114 318 FSTAT-MTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY 395 (518)
Q Consensus 318 ~g~~~-~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~ 395 (518)
+|.|+ ++.+++|+|++|++++.|+ +|||++ ++.++.+| +.+++.+...+ ..++||+|||+|++|+||+
T Consensus 362 ~G~p~~~~~~~~i~d~~~~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~f------~~~g~~~TGDlg~~~~dG~ 431 (544)
T 3o83_A 362 QGRPISSDDEIKIVDEQYREVPEGE--IGMLATRGPYTFCGY--YQSPEHNSQVF------DEDNYYYSGDLVQRTPDGN 431 (544)
T ss_dssp CCEESCTTCEEEEECTTSCBCCTTC--CEEEEEECTTSCSCC--TTCHHHHHHHB------CTTCCEEEEEEEEECTTSC
T ss_pred CceecCCCcEEEEECCCCCCCCCCC--eeEEEEecCCcchhh--cCChhhhhhhC------CCCCCeEcCCEEEEcCCCC
Confidence 99996 8999999999999999999 699999 77776653 23333333333 3467999999999999999
Q ss_pred EEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHh-
Q 010114 396 IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS- 474 (518)
Q Consensus 396 l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~- 474 (518)
++++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.++++++.++. ..+.+++.+. +.+
T Consensus 432 l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g-~~~~a~vv~~~~-~~~~~~l~~~----~~~~ 504 (544)
T 3o83_A 432 LRVVGRIKDQINRGGEKIASEEIEKLIL-LHPEVMHAALVAIVDEQFG-EKSCAFIVSRNP-ELKAVVLRRH----LMEL 504 (544)
T ss_dssp EEEEEEEC------------------------------------------------------------------------
T ss_pred EEEEeecCCEEEeCCEEECHHHHHHHHH-hCCCccEEEEEeccCCCCC-ceEEEEEEeCCC-CCCHHHHHHH----HHhC
Confidence 9999999999999999999999999997 9999999999999998888 889999987752 3344444444 555
Q ss_pred ccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114 475 KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 511 (518)
Q Consensus 475 ~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~ 511 (518)
+|+.|++|..|+++++||+|++||++|++|++++.+.
T Consensus 505 ~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 505 GIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp -------------------------------------
T ss_pred CCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhc
Confidence 7999999999999999999999999999999988753
No 18
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=1.6e-71 Score=575.93 Aligned_cols=458 Identities=18% Similarity=0.163 Sum_probs=373.0
Q ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++
T Consensus 65 ~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~ 144 (563)
T 1amu_A 65 LTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQK 144 (563)
T ss_dssp EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECG
T ss_pred ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcC
Confidence 59999999999999999999 99999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114 80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT 159 (518)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT 159 (518)
..... ...+. . ......+.. . .+... . .........++++++++||||||
T Consensus 145 ~~~~~------~~~~~-~-~~~~~~~~~--~--------------~~~~~-~-----~~~~~~~~~~~d~a~i~~TSGTT 194 (563)
T 1amu_A 145 HLVHL------IHNIQ-F-NGQVEIFEE--D--------------TIKIR-E-----GTNLHVPSKSTDLAYVIYTSGTT 194 (563)
T ss_dssp GGHHH------HTTSC-C-CSEEEECCC--S--------------TTTTS-C-----CSCCCCCCCTTSEEEEEEEC---
T ss_pred chhhh------hhhcc-c-cCceeeecc--h--------------hhccc-c-----CccCCCCCCCCCeEEEEECCCCC
Confidence 53211 00000 0 000111100 0 00000 0 00111223568999999999999
Q ss_pred CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCC--CChhHHHHHHHHcCc
Q 010114 160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGV 237 (518)
Q Consensus 160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~~ 237 (518)
|.||||+++|+++..........+++.++|++++.+|++|..++..++.+++.|+++++.+.. .++..+++.++++++
T Consensus 195 G~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~ 274 (563)
T 1amu_A 195 GNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEI 274 (563)
T ss_dssp --CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTC
T ss_pred CCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCC
Confidence 999999999999998887777778899999999999999999988888999999999998643 467889999999999
Q ss_pred cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCC--CCccc
Q 010114 238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL--QPQAF 315 (518)
Q Consensus 238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~--~~~~~ 315 (518)
|++.++|+++..+... .++++|.+++||+++++++.+.+.+. .++++.||+||+++.++..... .....
T Consensus 275 t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 345 (563)
T 1amu_A 275 TVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK---VTYINAYGPTETTICATTWVATKETIGHS 345 (563)
T ss_dssp CEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT---SEEEEEECCGGGSSCSEEEECCSSCCCSS
T ss_pred cEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC---CeEEEEECcCHHhHhheeeecccccCCCC
Confidence 9999999998877432 46789999999999999999988754 6799999999998654433222 22355
Q ss_pred CCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCc
Q 010114 316 GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGG 394 (518)
Q Consensus 316 ~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g 394 (518)
.++|+|+++++++|+|++|++++.|+ .|||++ ++.++.+| +.+++.+...+...+..++++||+|||+|++|+||
T Consensus 346 ~~vG~p~~~~~v~i~d~~~~~~~~g~--~GEl~v~g~~v~~GY--~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG 421 (563)
T 1amu_A 346 VPIGAPIQNTQIYIVDENLQLKSVGE--AGELCIGGEGLARGY--WKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDG 421 (563)
T ss_dssp CCCBEECTTEEEEEECTTSCBCCTTC--EEEEEEEETTCCCEE--TTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTS
T ss_pred CcccceeCCCEEEEECCCcCCCCCCC--cEEEEEechhhChhh--CCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCC
Confidence 78999999999999999999999999 699999 77777654 34555555566655666788999999999999999
Q ss_pred eEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHh
Q 010114 395 YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS 474 (518)
Q Consensus 395 ~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~ 474 (518)
+|+++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..+ +.++++++... ..+.+++++ ++++
T Consensus 422 ~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~~-~~~~a~vv~~~--~~~~~~l~~----~l~~ 493 (563)
T 1amu_A 422 NIEYLGRIDNQVKIRGHRVELEEVESILL-KHMYISETAVSVHKDHQEQ-PYLCAYFVSEK--HIPLEQLRQ----FSSE 493 (563)
T ss_dssp CEEEEEEGGGEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEECTTSC-EEEEEEEEESS--CCCHHHHHH----HHHH
T ss_pred eEEEeccccCEEEECCEEeCHHHHHHHHH-hCCCcceEEEEEeecCCCC-eEEEEEEEeCC--CCCHHHHHH----HHHh
Confidence 99999999999999999999999999997 9999999999999988877 88999998764 334455544 4677
Q ss_pred ccCCccccceEEEecCCCCCCCchhHHHHHHHHHh
Q 010114 475 KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIK 509 (518)
Q Consensus 475 ~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~ 509 (518)
+|+.|++|..|+++++||+|++||++|++|++...
T Consensus 494 ~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 528 (563)
T 1amu_A 494 ELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDL 528 (563)
T ss_dssp HSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCCC
T ss_pred hCchhhCCcEEEEecccCCCCCcChhHHhcCCccc
Confidence 89999999999999999999999999999987543
No 19
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=7.8e-71 Score=568.52 Aligned_cols=474 Identities=23% Similarity=0.257 Sum_probs=374.8
Q ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++
T Consensus 49 ~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 128 (529)
T 2v7b_A 49 TTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASG 128 (529)
T ss_dssp EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEG
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEech
Confidence 59999999999999999999 99999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhccCCCCcchhhhhccCCC--ceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccC
Q 010114 80 FILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG 157 (518)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG 157 (518)
... ..+....+.... ..++....... .......+.++...... ........++++++++||||
T Consensus 129 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSG 193 (529)
T 2v7b_A 129 ALV------QNVTQALESAEHDGCQLIVSQPRES----EPRLAPLFEELIDAAAP-----AAKAAATGCDDIAFWLYSSG 193 (529)
T ss_dssp GGH------HHHHHHHHCC---CCEEEEECC----------CCCBHHHHHHTSCC-----CSSCCCCCTTSEEEEEEC--
T ss_pred hhh------hHHHHHHhhccccCceEEEeccccc----ccccccchhhhhccCCC-----cccccCCCCCCeEEEEECCC
Confidence 543 122222221111 11111111000 00011245555442221 11122345789999999999
Q ss_pred CCCCCceEEeccchh-HHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHc
Q 010114 158 TTGEPKAIPWTQLSS-IRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDA 235 (518)
Q Consensus 158 tTG~pK~v~~s~~~~-~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~ 235 (518)
|||.||||+++|.++ ..........+++.++|++++.+|++|.+++.. ++.++..|+++++.+...++..+++.++++
T Consensus 194 TTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~ 273 (529)
T 2v7b_A 194 STGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEH 273 (529)
T ss_dssp ---CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHS
T ss_pred CCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHh
Confidence 999999999999999 666666556678899999999999999999876 778999999999886677889999999999
Q ss_pred CccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCccc
Q 010114 236 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAF 315 (518)
Q Consensus 236 ~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~ 315 (518)
++|+++++|+++..+++..........++|.+++|||++++++.+.+.+.+ ++++++.||+||++.++...... ....
T Consensus 274 ~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~-~~~~ 351 (529)
T 2v7b_A 274 RPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHF-GCEILDGIGSTEMLHIFLSNRAG-AVEY 351 (529)
T ss_dssp CCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHH-SCCEEEEEECTTTSSEEEECCTT-CCCT
T ss_pred CCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHh-CCceeeeEchhhcCceeeccccC-CCcc
Confidence 999999999999999886543333234899999999999999999998876 68899999999997665544332 2566
Q ss_pred CCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCc
Q 010114 316 GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGG 394 (518)
Q Consensus 316 ~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g 394 (518)
+++|.|+++++++|+|++|++++.|+ .|||++ ++.++.+| +.+++.+...+. ++||+|||+|++++||
T Consensus 352 ~~~G~p~~~~~~~i~d~~g~~~~~g~--~GEl~v~g~~~~~gY--~~~~~~t~~~f~-------~~~~~TGDl~~~~~~G 420 (529)
T 2v7b_A 352 GTTGRPVPGYEIELRDEAGHAVPDGE--VGDLYIKGPSAAVMY--WNNREKSRATFL-------GEWIRSGDKYCRLPNG 420 (529)
T ss_dssp TSCCEECTTCEEEEECTTSCBCCTTS--CEEEEEECTTCCCCB--TTCHHHHHHHEE-------TTEEEEEEEEEECTTS
T ss_pred CCcccCCCCCEEEEECCCCCCCCCCC--ccEEEEecCCccccc--CCChHHHHHhhh-------cCCcccCceEEECCCc
Confidence 89999999999999999999999999 699999 77766653 333333433342 4699999999999999
Q ss_pred eEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHh
Q 010114 395 YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS 474 (518)
Q Consensus 395 ~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~ 474 (518)
++++.||.||+||++|++|+|.+||++|. +||+|.+++|++. ++..+ +.+.+++++.++... .+.+.+.+++++++
T Consensus 421 ~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~~vv~~-~~~~~-~~~~a~vv~~~~~~~-~~~~~~~l~~~l~~ 496 (529)
T 2v7b_A 421 CYVYAGRSDDMLKVSGQYVSPVEVEMVLV-QHDAVLEAAVVGV-DHGGL-VKTRAFVVLKREFAP-SEILAEELKAFVKD 496 (529)
T ss_dssp CEEEEEEGGGCBC----CBCHHHHHHHHT-TSTTEEEEEEEEE-EETTE-EEEEEEEEECTTCCC-CHHHHHHHHHHHHT
T ss_pred cEEEeCccCCeEEECCEEECHHHHHHHHH-hCCCcceEEEEEe-cCCCc-eEEEEEEEecCCCCc-chhHHHHHHHHHHh
Confidence 99999999999999999999999999997 9999999999998 55556 788999998765321 23355678888899
Q ss_pred ccCCccccceEEEecCCCCCCCchhHHHHHHH
Q 010114 475 KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 506 (518)
Q Consensus 475 ~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~ 506 (518)
+|+.|++|..|+++++||+|++||++|++|++
T Consensus 497 ~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 497 RLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp TSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred hcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 99999999999999999999999999999985
No 20
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=2.8e-72 Score=583.61 Aligned_cols=459 Identities=20% Similarity=0.219 Sum_probs=292.4
Q ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++
T Consensus 101 ~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~ 180 (570)
T 4gr5_A 101 LTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSR 180 (570)
T ss_dssp EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECT
T ss_pred EeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecc
Confidence 69999999999999999999 99999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114 80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT 159 (518)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT 159 (518)
........ ......... .... ...........++++++++||||||
T Consensus 181 ~~~~~~~~------------~~~~~~~~~-----------------~~~~-----~~~~~~~~~~~~~d~a~i~~TSGTT 226 (570)
T 4gr5_A 181 PLSGRLTG------------TTTLYVEDE-----------------AASD-----APAGNLATGVGPEDVACVMFTSGST 226 (570)
T ss_dssp TTTTSSCS------------SEEEECCC-----------------------------CCCCCCCCCTTSEEEEECCSSCC
T ss_pred hhhhcccC------------Ccceeeecc-----------------cccc-----ccccccCCCCCCCCeEEEEECCcCC
Confidence 53211000 000111000 0000 0111112234579999999999999
Q ss_pred CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecC-CCChhHHHHHHHHcCcc
Q 010114 160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVT 238 (518)
Q Consensus 160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~~i~~~~~t 238 (518)
|.||||+++|+++.+.... ...+++.++|++++.+|++|..+...++.+++.|+++++.+. ..++..+++.|+++++|
T Consensus 227 G~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt 305 (570)
T 4gr5_A 227 GRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVT 305 (570)
T ss_dssp SSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCC
T ss_pred CCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCc
Confidence 9999999999999877665 455678999999999999998887778899999999999864 45788999999999999
Q ss_pred EEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCC---CCccc
Q 010114 239 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL---QPQAF 315 (518)
Q Consensus 239 ~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~---~~~~~ 315 (518)
++.++|+++..|++... .++++||.+++|||+++++..+.+.+.++++++++.||+||+++..+..... .....
T Consensus 306 ~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~ 382 (570)
T 4gr5_A 306 MLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTA 382 (570)
T ss_dssp EEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSS
T ss_pred EEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCc
Confidence 99999999999987643 3588999999999999999999988888889999999999998754433222 22345
Q ss_pred CCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCC--CCCceeccccceEEEec
Q 010114 316 GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPM--YKGMCLRRHGDIIKRTV 392 (518)
Q Consensus 316 ~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~TGD~~~~~~ 392 (518)
.++|+|+++++++|+|+++++++.|+ +|||++ ++.++.+| +.+++.+...|..+++ .++++||+|||+|++|+
T Consensus 383 ~~iG~p~~~~~v~i~d~~~~~~~~G~--~GEl~v~g~~v~~GY--~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~ 458 (570)
T 4gr5_A 383 LPIGVPLAGKRAYVLDDDLKPAANGA--LGELYVAGAGLAHGY--VSRPALTAERFVADPFAGPGGERMYRTGDLARRRA 458 (570)
T ss_dssp CCCBEECTTEEEEEECTTSCBCCTTC--EEEEEEEETTCCCEE--TTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECT
T ss_pred cccceeeCCCEEEEECCCCCCCCCCC--cEEEEEeecccchhc--CCCchhhhcccccCCCCCCCCCEEEeCCCeEEECC
Confidence 67999999999999999999999999 799999 77777654 3445555555544433 35678999999999999
Q ss_pred CceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCC-CCChhHHHHHHHHH
Q 010114 393 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF-TSQPDKLKMIFSKA 471 (518)
Q Consensus 393 ~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~-~~~~~~l~~~~~~~ 471 (518)
||+|+++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..+ +.++++|+.++.. ..+.+++ +++
T Consensus 459 dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~~-~~~~a~vv~~~~~~~~~~~~l----~~~ 532 (570)
T 4gr5_A 459 DGVLEYVGRADDQVKIRGFRVEPGEVEARLV-GHPAVRQAAVLAQDSRLGD-KQLVAYVVAERADAPPDAAEL----RRH 532 (570)
T ss_dssp TSCEEEEEC-----------------------------------------------------------------------
T ss_pred CCeEEEEcccCCEEEECcEEeCHHHHHHHHh-cCCCcceEEEEEeeCCCCC-eEEEEEEEecCCCCCcCHHHH----HHH
Confidence 9999999999999999999999999999997 9999999999999888777 8899999876532 2344444 444
Q ss_pred HHhccCCccccceEEEecCCCCCCCchhHHHHHHHH
Q 010114 472 IQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ 507 (518)
Q Consensus 472 ~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~ 507 (518)
+.++|+.|++|..++++++||+|++||++|++|++.
T Consensus 533 l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 533 VAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp ------------------------------------
T ss_pred HHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 677899999999999999999999999999999875
No 21
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=7.5e-72 Score=573.38 Aligned_cols=469 Identities=16% Similarity=0.138 Sum_probs=288.7
Q ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++
T Consensus 32 ~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 111 (509)
T 3ivr_A 32 LTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGT 111 (509)
T ss_dssp EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECS
T ss_pred EcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECc
Confidence 69999999999999999999 99999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114 80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT 159 (518)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT 159 (518)
... ...............++.... ....+.++...... .........++++++++||||||
T Consensus 112 ~~~------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~----~~~~~~~~~~~d~a~i~~TSGTT 172 (509)
T 3ivr_A 112 DYR------DIVAGVLPSLGGVKKAYAIGD---------GSGPFAPFKDLASD----TPFSAPEFGAADGFVIIHTAAVG 172 (509)
T ss_dssp TTH------HHHHHHGGGCSSCCEEEESSC---------CCSSCEEGGGTCCC----SCCCCCCCCTTSEEEEEEEEC--
T ss_pred chh------hhHHhhhcccCCceEEEEcCC---------CCcChhhHhhccCC----CCCCcCCCCccccEEEEeCCCCC
Confidence 543 121222222222111111111 11122222221111 11222345679999999999999
Q ss_pred CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccE
Q 010114 160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTV 239 (518)
Q Consensus 160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~ 239 (518)
|.||||+++|.+++..+......+++.++|++++.+|++|.+++...+.++..|++.++.. ..++..+++.|+++++|+
T Consensus 173 G~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~-~~~~~~~~~~i~~~~~t~ 251 (509)
T 3ivr_A 173 GRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA-KFDPAQAARDIEAHKVTV 251 (509)
T ss_dssp CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHHTCCE
T ss_pred CCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEec-ccCHHHHHHHHHHHCCcE
Confidence 9999999999999999888888889999999999999999999988666666677766666 678899999999999999
Q ss_pred EEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCCCC
Q 010114 240 LGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFS 319 (518)
Q Consensus 240 l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g 319 (518)
+.++|+++..+++.. ...+++++|.++.+|++ +..+.+.+.++++++++.||+||++++.+...... ...++|
T Consensus 252 ~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~--~~~~~G 324 (509)
T 3ivr_A 252 MAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRD--RPKSAG 324 (509)
T ss_dssp EEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGG--STTSCC
T ss_pred EEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCcccc--CCCccc
Confidence 999999999999876 45568899999999987 77778888887899999999999998765544322 234599
Q ss_pred cccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceEEE
Q 010114 320 TATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV 398 (518)
Q Consensus 320 ~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~ 398 (518)
.|+++++++|+|++|++++.|+ .|||++ ++.++.+| +.+++.+...+ .++||+|||+|++|+||++++
T Consensus 325 ~p~~~~~~~i~d~~~~~~~~g~--~GEl~v~g~~~~~gY--~~~~~~t~~~f-------~~g~~~TGDl~~~~~dG~l~~ 393 (509)
T 3ivr_A 325 RPLFWRTVAVVDAEDRPLPPGE--VGEIVLRGPTVFKGY--WNNAAATQHAF-------RNGWHHTGDMGRFDADGYLFY 393 (509)
T ss_dssp EECTTCEEEEECTTSCBCCTTC--CEEEEEESTTSCCEE--TTCHHHHHHHT-------GGGSEEEEEEEEECTTSCEEE
T ss_pred ccCCCcEEEEECCCCCCCCCCC--ceEEEEecCCccccc--cCCHHHhHHHh-------hcCCcccccEEEECCCceEEE
Confidence 9999999999999999999999 699999 77666653 22333333333 257999999999999999999
Q ss_pred eecc--CCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhcc
Q 010114 399 QGRA--DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKL 476 (518)
Q Consensus 399 ~gR~--~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l 476 (518)
.||. +|+||++|++|+|.+||++|. +||+|.+++|++.+++..+ +.+.+++++.++...+.+++.++ ++++|
T Consensus 394 ~GR~d~~d~ik~~G~~v~p~eiE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~v~~~~~~~~~~~~l~~~----l~~~L 467 (509)
T 3ivr_A 394 AGRAPEKELIKTGGENVYPAEVEGALK-QHPAIADAVVIGVPDPQWS-EAIKAVCVCKPGESIAADALAEF----VASLI 467 (509)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred eCCCCcceeEEECCEEECHHHHHHHHH-hCCCceeEEEEeccccccC-cEEEEEEEeCCCCCCCHHHHHHH----HHhhC
Confidence 9999 999999999999999999997 9999999999999998888 88999999887655555555555 66789
Q ss_pred CCccccceEEEecCCCCCCCchhHHHHHHHHHhcccc
Q 010114 477 NPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 513 (518)
Q Consensus 477 ~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~ 513 (518)
+.|++|..|+++++||+|++||++|++|++++++.-.
T Consensus 468 ~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~ 504 (509)
T 3ivr_A 468 ARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGH 504 (509)
T ss_dssp -------------------------------------
T ss_pred cccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhccc
Confidence 9999999999999999999999999999999976543
No 22
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=2.2e-70 Score=574.41 Aligned_cols=477 Identities=18% Similarity=0.203 Sum_probs=387.7
Q ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.+++++++++.
T Consensus 51 lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~ 130 (617)
T 3rg2_A 51 LSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADR 130 (617)
T ss_dssp EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEET
T ss_pred EeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecc
Confidence 69999999999999999999 99999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhccCCCCcchhhhhccCCCc-eeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCC
Q 010114 80 FILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGT 158 (518)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt 158 (518)
...... ............... ....... .....+.+....... ........++++++++|||||
T Consensus 131 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~ii~TSGS 195 (617)
T 3rg2_A 131 QHALFS-GDDFLNTFVTEHSSIRVVQLLND---------SGEHNLQDAINHPAE-----DFTATPSPADEVAYFQLSGGT 195 (617)
T ss_dssp TSGGGS-SSHHHHHHHHHSTTCCEEEEETC---------CSTTBHHHHHHSCCS-----SCCCCCCCTTSEEEEEECCCS
T ss_pred cccccc-cHHHHHHHhhcCCccceeeeccc---------ccccchhhhhccccc-----ccCCCCCCCCCeEEEEECCCc
Confidence 532100 001111222211111 1111110 111123333332221 112233457899999999999
Q ss_pred CCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhH--HHHHhhhcCcEEEEecCCCChhHHHHHHHHcC
Q 010114 159 TGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFLNGATLALYQGSPLERSFGKFVQDAG 236 (518)
Q Consensus 159 TG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~--~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~ 236 (518)
||.||||+++|.+++..+......+++.++|++++.+|++|.+++. .++.+++.|+++++.+ ..++..+++.+++++
T Consensus 196 TG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~ 274 (617)
T 3rg2_A 196 TGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA-DPSATLCFPLIEKHQ 274 (617)
T ss_dssp SSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTT
T ss_pred CCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHhC
Confidence 9999999999999999998888888999999999999999998876 4889999999999987 467888999999999
Q ss_pred ccEEEechHHHHHHHhcccCC--CCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcc
Q 010114 237 VTVLGTVPSLVKAWRNTNCLE--GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA 314 (518)
Q Consensus 237 ~t~l~~~P~~~~~l~~~~~~~--~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~ 314 (518)
+|++.++|+++..|++..... ..+++++|.+++|||++++++.+++.+.+ ++++++.||+||++..+..........
T Consensus 275 ~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~ 353 (617)
T 3rg2_A 275 VNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQVFGMAEGLVNYTRLDDSAEKI 353 (617)
T ss_dssp CCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEEEEETTEEEEECCTTSCHHHH
T ss_pred CcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEEeccCcceeecccCCCccccc
Confidence 999999999999998764332 33788999999999999999999998776 689999999999986554443333334
Q ss_pred cCCCCccc-ccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEec
Q 010114 315 FGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV 392 (518)
Q Consensus 315 ~~~~g~~~-~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~ 392 (518)
..++|.|+ ++.+++|+|+++++++.|+ +|||++ ++.+..+| +.+++.+...| ..++||+|||+|++++
T Consensus 354 ~~~~G~p~~~~~~~~i~d~~~~~~p~G~--~GEl~i~G~~v~~GY--~~~p~~t~~~f------~~~~~yrTGDl~~~~~ 423 (617)
T 3rg2_A 354 IHTQGYPMCPDDEVWVADAEGNPLPQGE--VGRLMTRGPYTFRGY--YKSPQHNASAF------DANGFYCSGDLISIDP 423 (617)
T ss_dssp HHCCCEESCTTCEEEEECTTSCBCCTTC--CEEEEEECSSSCSCC--TTCHHHHHHHB------CTTSCEEEEEEEEECT
T ss_pred ccCCCccCCCCceEEEECCCCCCCCCCC--ceEEEecCccccchh--cCChhhhhhcc------CCCCceecCceEEEcC
Confidence 56889997 7889999999999999999 699999 77776653 33444444444 3457999999999999
Q ss_pred CceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHH
Q 010114 393 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI 472 (518)
Q Consensus 393 ~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 472 (518)
||+|+++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.++++++..+ ..+.+++.+. +
T Consensus 424 dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~vv~~~--~~~~~~l~~~----l 495 (617)
T 3rg2_A 424 EGYITVQGREKDQINRGGEKIAAEEIENLLL-RHPAVIYAALVSMEDELMG-EKSCAYLVVKE--PLRAVQVRRF----L 495 (617)
T ss_dssp TSCEEEEEECSSEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEESS--CCCHHHHHHH----H
T ss_pred CceEEEEeecCCEEEECCEEeCHHHHHHHHH-hCCCeeEEEEEeccCcccC-eeEEEEEEeCC--CCCHHHHHHH----H
Confidence 9999999999999999999999999999997 9999999999999888877 88999998876 3455555555 5
Q ss_pred Hh-ccCCccccceEEEecCCCCCCCchhHHHHHHHHHhccc
Q 010114 473 QS-KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 512 (518)
Q Consensus 473 ~~-~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~ 512 (518)
.+ .|+.|++|..++++++||+|++||++|++|++++.+..
T Consensus 496 ~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~~ 536 (617)
T 3rg2_A 496 REQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 536 (617)
T ss_dssp HTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHHH
T ss_pred HhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhccc
Confidence 55 69999999999999999999999999999999887654
No 23
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.2e-70 Score=573.96 Aligned_cols=455 Identities=19% Similarity=0.171 Sum_probs=365.0
Q ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++
T Consensus 53 lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~ 132 (620)
T 4dg8_A 53 VDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCS 132 (620)
T ss_dssp EEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECC
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecC
Confidence 69999999999999999999 99999999999999999999999999999999999999999999999999999999765
Q ss_pred hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114 80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT 159 (518)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT 159 (518)
........ .... .+..... ...........++++++++||||||
T Consensus 133 ~~~~~~~~------------~~~~------------------~~~~~~~------~~~~~~~~~~~~~d~a~iiyTSGST 176 (620)
T 4dg8_A 133 TTPTPANG------------LPCV------------------PVRHLPA------APASVARPCFAADQIAYINFSSGTT 176 (620)
T ss_dssp SSCCCCTT------------SCEE------------------EGGGCCC------CCCCSSCCCCCTTSEEEEEEEBSSS
T ss_pred cccccccC------------Ccee------------------eeccCCc------CCccccCCCCCCCCeEEEEECCCcc
Confidence 32100000 0000 0000000 0111112234579999999999999
Q ss_pred CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecC-CCChhHHHHHHHHcCcc
Q 010114 160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVT 238 (518)
Q Consensus 160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~~i~~~~~t 238 (518)
|.||||+++|.++.+.+.. ...+++.++|++++.+|++|+.++..++.++..|+++++.+. ..++..+.+.|+++++|
T Consensus 177 G~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt 255 (620)
T 4dg8_A 177 GRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGAD 255 (620)
T ss_dssp SSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCC
T ss_pred ccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCc
Confidence 9999999999999887765 456788999999999999999999889999999999998743 45788999999999999
Q ss_pred EEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCC---CCCccc
Q 010114 239 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL---LQPQAF 315 (518)
Q Consensus 239 ~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~---~~~~~~ 315 (518)
++.++|++++.+++.. ..++++||.+++|||+++++..+.+.+.+++++++|.||+||+++.++.... ......
T Consensus 256 ~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~ 332 (620)
T 4dg8_A 256 SAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDD 332 (620)
T ss_dssp EEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSS
T ss_pred EEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCC
Confidence 9999999999998753 3468899999999999999988888777778899999999999875443222 123456
Q ss_pred CCCCcccccccEEEECCCCCC-CCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCc--eeccccceEEEe
Q 010114 316 GAFSTATMTAGLVILDECGVP-YPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGM--CLRRHGDIIKRT 391 (518)
Q Consensus 316 ~~~g~~~~~~~~~i~~~~g~~-~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~TGD~~~~~ 391 (518)
.++|+|+++++++|+|+++.+ ++.|+ .|||++ ++++..+| +.+++.+...|..++. .+. +||+|||+|+++
T Consensus 333 ~~iG~p~~~~~~~i~d~~~~~~~~~g~--~GEl~i~G~~v~~GY--~~~p~~t~~~f~~~p~-~~~~~~~yrTGDl~~~~ 407 (620)
T 4dg8_A 333 IPIGKAIAGTAVLLLDEHGQEIAEPDR--AGEIVAFGAGLAQGY--RNDAARTRASFVELPY-RGRLLRAYRTGDRARYD 407 (620)
T ss_dssp CCCBEECTTEEEEEECTTSCBCCSSSC--CEEEEEEETTCCSEE--TTCHHHHHHHEEEEEE-TTEEEEEEEEEEEEEEC
T ss_pred CCceecccCcEEEEECccCCCCCCCCC--ceEEEEecccccccc--CCChhhhhhhhccCCC-CCCCceEEeCCCEEEEC
Confidence 789999999999999999888 78888 699999 77777654 3344555555544332 333 799999999999
Q ss_pred cCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHH
Q 010114 392 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKA 471 (518)
Q Consensus 392 ~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 471 (518)
+||+|+++||.||+||++|++|+|.|||++|. +||+|.+++|++.+++..+ .++++++... +++.+ .
T Consensus 408 ~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~-~~p~V~~a~Vv~~~~~~~~--~lv~~~~~~~------~~~~~----~ 474 (620)
T 4dg8_A 408 EQGRLRFIGRGDGQVKLNGYRLDLPALEQRFR-RQPGILDCALLVRERNGVK--QLLCAWTGKA------DASPQ----A 474 (620)
T ss_dssp TTSCEEEEECSSSEEEETTEEEEHHHHHHHHH-TSTTEEEEEEEEEEETTEE--EEEEEEEECT------TCCCH----H
T ss_pred CCCeEEEEccCCCEEEECCEEcCHHHHHHHHH-hCCCccEEEEEEEeCCCce--EEEEEEecCh------HHHHH----H
Confidence 99999999999999999999999999999998 9999999999998776443 4444444322 12222 3
Q ss_pred HHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcccc
Q 010114 472 IQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 513 (518)
Q Consensus 472 ~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~ 513 (518)
+.++|+.|++|..++++++||+|++||++|++|++++.+...
T Consensus 475 l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~~~ 516 (620)
T 4dg8_A 475 LLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEPLE 516 (620)
T ss_dssp HHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSCC-
T ss_pred HHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhccccccc
Confidence 556899999999999999999999999999999998865543
No 24
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=3.8e-71 Score=609.42 Aligned_cols=485 Identities=20% Similarity=0.236 Sum_probs=309.9
Q ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++|.++++++.++++.++++++|+++
T Consensus 89 ~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 168 (979)
T 3tsy_A 89 YTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEA 168 (979)
T ss_dssp EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECS
T ss_pred EEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEECh
Confidence 59999999999999999999 99999999999999999999999999999999999999999999999999999999997
Q ss_pred hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114 80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT 159 (518)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT 159 (518)
... ..+...........+.+. .....+...+...+.++...... ...........++++++|+||||||
T Consensus 169 ~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~i~~TSGTT 237 (979)
T 3tsy_A 169 RYV------DKIKPLQNDDGVVIVCID---DNESVPIPEGCLRFTELTQSTTE--ASEVIDSVEISPDDVVALPYSSGTT 237 (979)
T ss_dssp TTT------TTSHHHHHTSCCEEEECC---CCTTSCCCTTEEEGGGTSSCCSG--GGGGSCCSCCCTTSEEECCBCCCSS
T ss_pred HHH------HHHHHHhhcCCceEEEeC---CcccccCCcccccHHHHhhcccc--ccccCCcCCCCccceEEEEeCCCCC
Confidence 543 233333322222222221 11112223344556665543321 1112223345679999999999999
Q ss_pred CCCceEEeccchhHHHhhhccc----cccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHH
Q 010114 160 GEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQD 234 (518)
Q Consensus 160 G~pK~v~~s~~~~~~~~~~~~~----~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~ 234 (518)
|.||||+++|++++.++..... .+.+.++|++++.+|++|.+++.. ++.++..|+++++.+ ..++..+++.+++
T Consensus 238 G~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~ 316 (979)
T 3tsy_A 238 GLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMP-KFEINLLLELIQR 316 (979)
T ss_dssp SSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECS-SCCHHHHHHHHHH
T ss_pred CCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeC-CCCHHHHHHHHHH
Confidence 9999999999999887765432 456789999999999999999966 788999999999987 5678999999999
Q ss_pred cCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecC----CC
Q 010114 235 AGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGS----LL 310 (518)
Q Consensus 235 ~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~----~~ 310 (518)
+++|++.++|+++..|++.......++++||.+++||+++++++.+++.+.++++++++.||+||+++++..+. ..
T Consensus 317 ~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~ 396 (979)
T 3tsy_A 317 CKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEP 396 (979)
T ss_dssp HTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSC
T ss_pred hCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCc
Confidence 99999999999999999988777888999999999999999999999999888899999999999997655442 12
Q ss_pred CCcccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceE
Q 010114 311 QPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDII 388 (518)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~ 388 (518)
.....+++|.|+++++++|+| ++|++++.|+ .|||++ ++.+..+| +.+++.+...+ ..++||+|||+|
T Consensus 397 ~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~--~GEl~i~g~~v~~GY--~~~p~~t~~~f------~~~g~~~TGDl~ 466 (979)
T 3tsy_A 397 FPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQ--PGEICIRGHQIMKGY--LNNPAATAETI------DKDGWLHTGDIG 466 (979)
T ss_dssp CCCCTTCCCEECSSCEEEEECTTSCCBCCTTC--CEEEEEESTTSCSEE--TTCHHHHHHHB------CTTSCEEEEEEE
T ss_pred cccCCCCcCcccCCcEEEEEeCCCCCCCCCCC--ccEEEEECCCccccc--cCChhhhhhhc------cCCCcEEcCCEE
Confidence 234568899999999999999 6799999999 599999 77776653 23333333333 356799999999
Q ss_pred EEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHH
Q 010114 389 KRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIF 468 (518)
Q Consensus 389 ~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~ 468 (518)
++|+||+|+++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.++++|+..++...+.++++++
T Consensus 467 ~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~-~~p~V~~~~Vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~l~~~- 543 (979)
T 3tsy_A 467 LIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-GHPDITDVAVVAMKEEAAG-EVPVAFVVKSKDSELSEDDVKQF- 543 (979)
T ss_dssp EECTTSCEEEEEESCC----------------------------------------------------------------
T ss_pred EEcCCceEEEecCCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEecccCCC-cEEEEEEEECCCCCCCHHHHHHH-
Confidence 99999999999999999999999999999999997 9999999999999988888 89999999877655555555554
Q ss_pred HHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcccc
Q 010114 469 SKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 513 (518)
Q Consensus 469 ~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~ 513 (518)
++++|+.|++|..++++++||+|++||++|++|++++.+.+.
T Consensus 544 ---l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 585 (979)
T 3tsy_A 544 ---VSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGLG 585 (979)
T ss_dssp ---------------------------------------------
T ss_pred ---HHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhcC
Confidence 667899999999999999999999999999999999987654
No 25
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3.2e-69 Score=553.03 Aligned_cols=470 Identities=16% Similarity=0.182 Sum_probs=352.1
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEechh
Q 010114 1 MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 80 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~ 80 (518)
+||+||.++++++|++|++. +||+|+++++|++++++++|||+++|++++|+++.++++++.++++.++++++|+++.
T Consensus 27 ~Ty~eL~~~~~~lA~~L~~~--~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~ 104 (501)
T 3ipl_A 27 YTYQNLYCEASLLAKRLKAY--QQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLP 104 (501)
T ss_dssp EEHHHHHHHHHHHHHHHHTT--CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSC
T ss_pred EEHHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccc
Confidence 69999999999999999986 9999999999999999999999999999999999999999999999999999999875
Q ss_pred hhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCCC
Q 010114 81 ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 160 (518)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG 160 (518)
..... .................... .........+......................++++++++|||||||
T Consensus 105 ~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG 176 (501)
T 3ipl_A 105 LELRG------FQIVSLDDIEFAGRDITTNG--LLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTG 176 (501)
T ss_dssp CCCTT------SEEEETTC----------------------------------CCHHHHTCCCCCTTSEEEEEECCTTTS
T ss_pred ccccc------ccccccccceeeeeeccccc--ccccccccccccchhhccccCCcccccccCCCCCCeEEEEECCCCCC
Confidence 43211 11110000000000000000 00000000000000000000000011122346799999999999999
Q ss_pred CCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccEE
Q 010114 161 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVL 240 (518)
Q Consensus 161 ~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l 240 (518)
.||+|+++|.++...+......+++.++|++++.+|++|.+|+..++.+++.|+++++.+ ..++..+++.++++++|++
T Consensus 177 ~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~ 255 (501)
T 3ipl_A 177 PQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD-KFNAEQILTMIKNERITHI 255 (501)
T ss_dssp CCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHSCCCEE
T ss_pred CCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-CCCHHHHHHHHHHcCCcEE
Confidence 999999999999999888888889999999999999999999988899999999999987 5788999999999999999
Q ss_pred EechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCC-CCcccCCCC
Q 010114 241 GTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL-QPQAFGAFS 319 (518)
Q Consensus 241 ~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~-~~~~~~~~g 319 (518)
+++|++++.|++....... ++|.+++|||++++++.+++.+. ++++++.||+||+++.+...... .....+++|
T Consensus 256 ~~~P~~~~~l~~~~~~~~~---~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G 330 (501)
T 3ipl_A 256 SLVPQTLNWLMQQGLHEPY---NLQKILLGGAKLSATMIETALQY--NLPIYNSFGMTETCSQFLTATPEMLHARPDTVG 330 (501)
T ss_dssp EECHHHHHHHHHHTCCSCT---TCCEEEECSSCCCHHHHHHHHHT--TCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCB
T ss_pred EchHHHHHHHHhcCCCCcC---cccEEEEeCCCCCHHHHHHHHHh--CCCEeccccccccccceeecCccccccCCCCCC
Confidence 9999999999987644332 89999999999999999988763 78899999999998765544332 234567899
Q ss_pred cccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceEEE
Q 010114 320 TATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV 398 (518)
Q Consensus 320 ~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~ 398 (518)
.|+++++++|+|++ .++ .|||++ ++.++.+|. .+++.+.. + .++||+|||+|++|+||++++
T Consensus 331 ~p~~~~~~~i~d~~-----~~~--~GEl~v~g~~~~~gY~--~~~~~t~~-~-------~~g~~~TGDl~~~~~~G~l~~ 393 (501)
T 3ipl_A 331 MPSANVDVKIKNPN-----KEG--HGELMIKGANVMNGYL--YPTDLTGT-F-------ENGYFNTGDIAEIDHEGYVMI 393 (501)
T ss_dssp EECTTCEEEEESCC-----SSC--CEEEEEESTTSCSCCS--BSTTCCCS-E-------ETTEEEEEEEEEECTTSCEEE
T ss_pred CCCCCcEEEEecCC-----CCC--ccEEEEeccchhhhhC--cChhhcch-h-------cCCceecCCEEEEcCCCeEEE
Confidence 99999999999975 344 599999 777766543 23333322 2 356999999999999999999
Q ss_pred eeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhccCC
Q 010114 399 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP 478 (518)
Q Consensus 399 ~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~ 478 (518)
+||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.++++++... ..+.+++.++ +.++|+.
T Consensus 394 ~GR~dd~ik~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~g-~~~~a~v~~~~--~~~~~~l~~~----l~~~L~~ 465 (501)
T 3ipl_A 394 YDRRKDLIISGGENIYPYQIETVAK-QFPGISDAVCVGHPDDTWG-QVPKLYFVSES--DISKAQLIAY----LSKHLAK 465 (501)
T ss_dssp EEECCCCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEESS--CCCHHHHHHH----HHHHSCG
T ss_pred EccccceEEECCEEECHHHHHHHHH-hCCCccEEEEEEEecccCC-ceEEEEEEeCC--CCCHHHHHHH----HHhhCcc
Confidence 9999999999999999999999997 9999999999999998888 88999988644 3455555555 6678999
Q ss_pred ccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114 479 LFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 511 (518)
Q Consensus 479 ~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~ 511 (518)
|++|..|+++++||+|++||++|++|++..+++
T Consensus 466 ~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 466 YKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp GGSCSEEEECSSCC-------------------
T ss_pred ccCCCEEEEecccCCCCCCCEeHHHHhhccccc
Confidence 999999999999999999999999999988765
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=6.8e-70 Score=557.05 Aligned_cols=446 Identities=21% Similarity=0.233 Sum_probs=348.5
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEechh
Q 010114 1 MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 80 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~ 80 (518)
+||+||.++++++|+.|. .|++|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.
T Consensus 49 ~Ty~eL~~~~~~~A~~L~----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~ 124 (505)
T 3nyq_A 49 LTYAELAAAAGATAGRIG----GAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPD 124 (505)
T ss_dssp EEHHHHHHHHHHHHTTCC-------CEEEECCSSHHHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTT
T ss_pred eeHHHHHHHHHHHHhhcc----CCCEEEEEcCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCc
Confidence 699999999999998874 4899999999999999999999999999999999999999999999999999999864
Q ss_pred hhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCCC
Q 010114 81 ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 160 (518)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG 160 (518)
.. .. ..... .....+. .. ...........++++++++|||||||
T Consensus 125 ~~-----~~---~~~~~--~~~~~~~-----------------------~~---~~~~~~~~~~~~~d~a~i~~TSGTTG 168 (505)
T 3nyq_A 125 AE-----LP---PALGA--LERVDVD-----------------------VR---ARGAVPEDGADDGDPALVVYTSGTTG 168 (505)
T ss_dssp CC-----CC---GGGTT--SEEEECC-----------------------TT---CCCCCCCCCCCTTSEEEEEEECCSSS
T ss_pred cc-----cc---hhhcc--ccccccc-----------------------cc---cccCCCCCCCCCCCeEEEEeCCCCcC
Confidence 10 00 00000 0000000 00 00011122345689999999999999
Q ss_pred CCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHcCccE
Q 010114 161 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTV 239 (518)
Q Consensus 161 ~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~ 239 (518)
.||||+++|.++...+......+++.++|++++.+|++|..++.. ++.++..|+++++.+ ..++..+++.+ ++++|+
T Consensus 169 ~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i-~~~~t~ 246 (505)
T 3nyq_A 169 PPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG-RFSTEGAAREL-NDGATM 246 (505)
T ss_dssp SCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS-SCCHHHHHHHH-TTTCCE
T ss_pred CCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC-CCChHHHHHHH-hhCCeE
Confidence 999999999999999888888889999999999999999999875 889999999999876 56778888888 889999
Q ss_pred EEechHHHHHHHhcccCC---CCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccC
Q 010114 240 LGTVPSLVKAWRNTNCLE---GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFG 316 (518)
Q Consensus 240 l~~~P~~~~~l~~~~~~~---~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~ 316 (518)
++++|+++..+++..... ...++++|.+++||+++++++.+++.+.+ ++++++.||+||+++.+.... ......+
T Consensus 247 ~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~-~~~~~~~ 324 (505)
T 3nyq_A 247 LFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTETLMNTSVRA-DGEPRAG 324 (505)
T ss_dssp EEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCT-TSCCCTT
T ss_pred EEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeecccchhhcccccccCC-CCCCCCC
Confidence 999999999998753221 23577899999999999999999998775 688999999999987655433 3445678
Q ss_pred CCCcccccccEEEECCCCCCCCC---CCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEec
Q 010114 317 AFSTATMTAGLVILDECGVPYPD---DQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV 392 (518)
Q Consensus 317 ~~g~~~~~~~~~i~~~~g~~~~~---~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~ 392 (518)
++|+|+++++++|+|++|++++. |+ +|||++ ++.++.+| +.+++.+...| ..++||+|||+|++|+
T Consensus 325 ~vG~p~~~~~~~i~d~~g~~~~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~f------~~~g~y~TGDl~~~~~ 394 (505)
T 3nyq_A 325 TVGVPLPGVELRLVEEDGTPIAALDGES--VGEIQVRGPNLFTEY--LNRPDATAAAF------TEDGFFRTGDMAVRDP 394 (505)
T ss_dssp CCCEECTTCEEEEC-----CCCCCCSCC--CEEEEEESTTSCCEE--TTCHHHHHHTB------CTTSCEEEEEEEEECT
T ss_pred CcccCCCCCEEEEECCCCCCcccCCCCc--eEEEEEecCchhhhh--CCChhHhhhhh------cCCCCCccCCeEEECC
Confidence 99999999999999999999886 66 699999 77766653 22333333333 2457999999999999
Q ss_pred CceEEEeecc-CCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCC-CCCChhHHHHHHHH
Q 010114 393 GGYIIVQGRA-DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG-FTSQPDKLKMIFSK 470 (518)
Q Consensus 393 ~g~l~~~gR~-~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~-~~~~~~~l~~~~~~ 470 (518)
||+++++||. ||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.++++|++.+. ...+.+++.+
T Consensus 395 dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~l~a~vv~~~~~~~~~~~~l~~---- 468 (505)
T 3nyq_A 395 DGYVRIVGRKATDLIKSGGYKIGAGEIENALL-EHPEVREAAVTGEPDPDLG-ERIVAWIVPADPAAPPALGTLAD---- 468 (505)
T ss_dssp TSCEEEEEESSCCCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEESSTTSCCCHHHHHH----
T ss_pred CccEEEeCCccCceEEeCCEEECHHHHHHHHH-HCcCccEEEEEeeECCCCC-cEEEEEEEECCCCCCCCHHHHHH----
Confidence 9999999998 599999999999999999997 9999999999999998888 899999998763 3344445444
Q ss_pred HHHhccCCccccceEEEecCCCCCCCchhHHHHHHH
Q 010114 471 AIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 506 (518)
Q Consensus 471 ~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~ 506 (518)
+++++|+.|++|..|+++++||+|++||++|++|++
T Consensus 469 ~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 469 HVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp HHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred HHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 467789999999999999999999999999999986
No 27
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=6.5e-68 Score=554.78 Aligned_cols=475 Identities=15% Similarity=0.128 Sum_probs=371.5
Q ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccch---hHHHHHHHHHhcCceEEE
Q 010114 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF---AAREIATRLRVSKAKGIF 76 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~---~~~~i~~~l~~~~~~~ii 76 (518)
+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.+ +.+++.++++.++++++|
T Consensus 41 ~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi 120 (590)
T 3kxw_A 41 MTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVL 120 (590)
T ss_dssp EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEE
T ss_pred EcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEE
Confidence 59999999999999999999 99999999999999999999999999999999999987 567899999999999999
Q ss_pred echhhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEecc
Q 010114 77 TQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSS 156 (518)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS 156 (518)
++........... ..... .... ...+....+.... .....+....++++++++|||
T Consensus 121 ~~~~~~~~~~~~~-----~~~~~---~~~~-----------~~~~~~~~~~~~~-----~~~~~~~~~~~~d~a~i~~TS 176 (590)
T 3kxw_A 121 MIADHIKKFTADE-----LNTNP---KFLK-----------IPAIALESIELNR-----SSSWQPTSIKSNDIAFLQYTS 176 (590)
T ss_dssp ECHHHHHHHCC----------CC---EETT-----------EEEEEGGGCCGGG-----GGGCCCCCCCTTSEEEEEECS
T ss_pred eCHHHHHHHHHhh-----hhhcc---cccc-----------cceeechhccccc-----cccCCCCCCCCCCeEEEEeCc
Confidence 9875432111000 00000 0000 0000111111000 011122334678999999999
Q ss_pred CCCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCC---ChhHHHHHH
Q 010114 157 GTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSP---LERSFGKFV 232 (518)
Q Consensus 157 GtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~---~~~~~~~~i 232 (518)
||||.||||+++|.+++.++......+++.++|++++.+|++|.+|+.. ++.+++.|+++++.++.. ++..+++.|
T Consensus 177 GTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i 256 (590)
T 3kxw_A 177 GSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHI 256 (590)
T ss_dssp SCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHH
T ss_pred CCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHH
Confidence 9999999999999999999988888889999999999999999999987 889999999999987432 678999999
Q ss_pred HHcCccEEEechHHHHHHHhc---ccCCCCCccchhhhhccCCCCCchhhhHhhhccc-----cCceeccccccccceeE
Q 010114 233 QDAGVTVLGTVPSLVKAWRNT---NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAW-----YNAIIESCGGTELSSAY 304 (518)
Q Consensus 233 ~~~~~t~l~~~P~~~~~l~~~---~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~-----~~~i~~~yg~tE~~~~~ 304 (518)
+++++|++.++|+++..+++. ......+++++|.+++||+++++++.+++.+.++ +.++++.||+||+++.+
T Consensus 257 ~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~ 336 (590)
T 3kxw_A 257 TKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLV 336 (590)
T ss_dssp HHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEE
T ss_pred HHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccccccccccccccee
Confidence 999999999999999998875 3345667899999999999999999999887763 34799999999999876
Q ss_pred eecCCC--------------------------CCcccCCCCcccccccEEEECCC-CCCCCCCCCeeeeeee-cccccCC
Q 010114 305 IQGSLL--------------------------QPQAFGAFSTATMTAGLVILDEC-GVPYPDDQPCVGEVGL-FPLYLGA 356 (518)
Q Consensus 305 ~~~~~~--------------------------~~~~~~~~g~~~~~~~~~i~~~~-g~~~~~~~~~~Gel~v-~~~~~~~ 356 (518)
+..... ......++|.|+++ ++|+|++ +.+++.|+ +|||++ ++.++.+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~--~GEl~v~g~~v~~G 412 (590)
T 3kxw_A 337 TGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQ--VGEIWVQSNSVAKG 412 (590)
T ss_dssp EECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTB--CEEEEEESTTSCCC
T ss_pred ecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCC--EEEEEEeCCccccc
Confidence 644321 11234688999998 8888966 89999998 699999 7777766
Q ss_pred ccccccccccceeeeCCCCCC--CceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccc--ee
Q 010114 357 SDRLLNADHEEVYFRGMPMYK--GMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL--ET 432 (518)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~--~~ 432 (518)
| +.+++.+...|.+.+... +.+||+|||+|++| ||+|+++||.||+||++|++|+|.+||++|...+|.|. ++
T Consensus 413 Y--~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~ 489 (590)
T 3kxw_A 413 Y--WNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKC 489 (590)
T ss_dssp B--TTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEE
T ss_pred c--cCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccccCccE
Confidence 4 345555555555433333 44599999999999 99999999999999999999999999999943899998 79
Q ss_pred eEEEeCCCCCCccEEEEEEEecCCC--CCChhHHHHHHHHHHHhccCCccccc-eEEEe--cCCCCCCCchhHHHHHHHH
Q 010114 433 AAISVSPAGGGPEVLVIFVVLKKGF--TSQPDKLKMIFSKAIQSKLNPLFKVS-LVKVV--PEFPRTASNKLLRRVLRDQ 507 (518)
Q Consensus 433 ~vv~~~~~~~g~~~~~~~v~~~~~~--~~~~~~l~~~~~~~~~~~l~~~~~p~-~i~~v--~~~P~t~~GKv~R~~l~~~ 507 (518)
+|++++++. + +.+++++++.++. ..+.+++.+.+++.+.+. ++.|. .++++ ++||+|++||++|++|+++
T Consensus 490 ~v~~~~~~~-~-~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~ 564 (590)
T 3kxw_A 490 AAFVIQEEH-E-YKLTVMCEVKNRFMDDVAQDNLFNEIFELVYEN---HQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKH 564 (590)
T ss_dssp EEEEEEETT-E-EEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHH---HSCCCCEEEEEETTCSCCCSCHHHHHHHHHHH
T ss_pred EEEEecCCC-C-ceEEEEEEeccccccchhHHHHHHHHHHHHHHH---cCCceeEEEEECCCccCcCCCcHHHHHHHHHH
Confidence 999988765 4 7788888887653 234456666666555432 45553 45555 7999999999999999999
Q ss_pred Hhcc
Q 010114 508 IKHE 511 (518)
Q Consensus 508 ~~~~ 511 (518)
+.++
T Consensus 565 ~~~~ 568 (590)
T 3kxw_A 565 LLDK 568 (590)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 8754
No 28
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=5.7e-68 Score=598.10 Aligned_cols=463 Identities=18% Similarity=0.200 Sum_probs=384.2
Q ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+||+||+++++++|+.|++. +++||+|+++++|++++++++|||+++|++++||+|.++.+++.+++++++++++|+++
T Consensus 490 lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~ 569 (1304)
T 2vsq_A 490 LSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQ 569 (1304)
T ss_dssp EEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECS
T ss_pred EcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECc
Confidence 59999999999999999999 99999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114 80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT 159 (518)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT 159 (518)
.........+ . ....+.+.. .... .... ........++++++|+||||||
T Consensus 570 ~~~~~~~~~~-------~-~~~~~~~~~---------------~~~~-~~~~------~~~~~~~~~~~~ayiiyTSGST 619 (1304)
T 2vsq_A 570 EMKEQAAELP-------Y-TGTTLFIDD---------------QTRF-EEQA------SDPATAIDPNDPAYIMYTSGTT 619 (1304)
T ss_dssp TTCTTSTTCC-------C-CSEEEESSC---------------GGGG-GSCS------SCCCCCCCTTSEEEEEEECCSS
T ss_pred chhhhhhccC-------C-CCcEEEecc---------------cccc-cccc------CCCCCCCCCCCeEEEEeCCCCC
Confidence 5321110000 0 001111100 0000 0000 1112234578999999999999
Q ss_pred CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCC--CChhHHHHHHHHcCc
Q 010114 160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGV 237 (518)
Q Consensus 160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~~ 237 (518)
|.||||+++|+++.+. ......+++.++|+++...|++|+.+...++.++..|+++++.+.. .++..+.+.|+++++
T Consensus 620 G~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~v 698 (1304)
T 2vsq_A 620 GKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENV 698 (1304)
T ss_dssp SSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTC
T ss_pred CCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCC
Confidence 9999999999999876 4455677889999999999999999988899999999999998753 467899999999999
Q ss_pred cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCC---CCcc
Q 010114 238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL---QPQA 314 (518)
Q Consensus 238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~---~~~~ 314 (518)
|+++++|++++.+.+.. ...+++||.+++|||+++++..+.+.+.+++.+++|.||+||+++.++..... ....
T Consensus 699 t~~~~~p~~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~ 775 (1304)
T 2vsq_A 699 NVMFATTALFNLLTDAG---EDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSIS 775 (1304)
T ss_dssp CEEEEEHHHHHHHHHHC---SHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCS
T ss_pred cEEEccHHHHHHHHhhc---hhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCC
Confidence 99999999999997653 23467899999999999999999888887778899999999998754433222 2234
Q ss_pred cCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecC
Q 010114 315 FGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG 393 (518)
Q Consensus 315 ~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~ 393 (518)
..++|+|+++++++|+|++++++|.|+ .|||+| |+++..+| +.+++.+...|..+++.++++||+|||+|++++|
T Consensus 776 ~~~iG~p~~~~~~~i~d~~~~~~p~G~--~GEl~i~G~~v~~GY--~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~d 851 (1304)
T 2vsq_A 776 SLPIGKPISNASVYILNEQSQLQPFGA--VGELCISGMGVSKGY--VNRADLTKEKFIENPFKPGETLYRTGDLARWLPD 851 (1304)
T ss_dssp SCCCBEECTTEEEEEECTTSCBCCTTC--CEEEEEEETTCCCCB--TTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTT
T ss_pred CCCCceeeCCCEEEEECCCcCCCCCCC--ceEEEEeccccCccc--cCCcccchhhhccCCCCCCCeeEecCCeEEEcCC
Confidence 568999999999999999999999999 699999 77777664 3455666666776777788999999999999999
Q ss_pred ceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHH
Q 010114 394 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ 473 (518)
Q Consensus 394 g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~ 473 (518)
|.|+++||.||+||++|++|+|.|||.+|. +||+|.+++|++.+++..+ +.+++|++..+ ..+.+++++ ++.
T Consensus 852 G~l~~~GR~d~qvki~G~rie~~eIE~~l~-~~p~V~~a~V~~~~~~~~~-~~l~a~vv~~~--~~~~~~l~~----~l~ 923 (1304)
T 2vsq_A 852 GTIEYAGRIDDQVKIRGHRIELEEIEKQLQ-EYPGVKDAVVVADRHESGD-ASINAYLVNRT--QLSAEDVKA----HLK 923 (1304)
T ss_dssp SCEEEEEEGGGEEEETTEEEEHHHHHHHHH-HSSSCCEEEEEEECCSSSC-CEEEEEEECSS--SSCHHHHHH----HHH
T ss_pred CeEEEEcCCCCEEEECCEeeCHHHHHHHHH-hCCCCceEEEEEEecCCCC-EEEEEEEeCCC--CCCHHHHHH----HHH
Confidence 999999999999999999999999999997 9999999999999887777 89999998765 344455544 467
Q ss_pred hccCCccccceEEEecCCCCCCCchhHHHHHHHHHh
Q 010114 474 SKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIK 509 (518)
Q Consensus 474 ~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~ 509 (518)
++||.||+|..++++++||+|++||++|++|++...
T Consensus 924 ~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~~ 959 (1304)
T 2vsq_A 924 KQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQ 959 (1304)
T ss_dssp HHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCCG
T ss_pred HhChHhhhccEEEEecccCCCCCcccCHhhcCCcch
Confidence 789999999999999999999999999999876544
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.5e-68 Score=555.57 Aligned_cols=467 Identities=19% Similarity=0.210 Sum_probs=281.6
Q ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+||+||.++++++|+.|++. + +||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++
T Consensus 56 ~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~ 134 (562)
T 3ite_A 56 WTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCD 134 (562)
T ss_dssp EEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECT
T ss_pred CCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcc
Confidence 59999999999999999999 8 799999999999999999999999999999999999999999999999999999986
Q ss_pred hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114 80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT 159 (518)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT 159 (518)
........ .....++. .....+.+.+..... ........++++++++||||||
T Consensus 135 ~~~~~~~~-----------~~~~~~~~-----------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTT 187 (562)
T 3ite_A 135 NNFDGVEL-----------PPETKVLD-----------TKNQSFIENLSTQDT-----SDILNNYPENLDAYLLYTSGST 187 (562)
T ss_dssp TTTTTCCC-----------CTTCEEEE-----------TTCHHHHHHHHHSCC-----SCCCCCCCTTSEEEEEEECC--
T ss_pred cccccccc-----------Cccceeec-----------ccchhhhhhcccccc-----cccccCCCCCCcEEEEECCCCC
Confidence 43211100 00001110 011122222222211 1111223468899999999999
Q ss_pred CCCceEEeccchhHHHhhhccc--------cccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHH
Q 010114 160 GEPKAIPWTQLSSIRCTAEGWA--------HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKF 231 (518)
Q Consensus 160 G~pK~v~~s~~~~~~~~~~~~~--------~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~ 231 (518)
|.||||+++|.++...+..... .+.+...+++++..|++|..++..++.++..|+++++.+....+..+.+.
T Consensus 188 G~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~ 267 (562)
T 3ite_A 188 GTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRT 267 (562)
T ss_dssp -CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHH
T ss_pred CCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHH
Confidence 9999999999999887654332 24577889999999999999988888999999999887644445778899
Q ss_pred HHHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC
Q 010114 232 VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ 311 (518)
Q Consensus 232 i~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~ 311 (518)
++++++|++.++|++++.+... ..++++||.+++||+++++++.+++.+.+ ++++++.||+||++..+.......
T Consensus 268 i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~ 342 (562)
T 3ite_A 268 FRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQQIWSSSD-RVALVNVYGPTEVTIGCSAGRILP 342 (562)
T ss_dssp HHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHHHHHTTCS-SCEEEEEECCGGGCSCSEEEECCT
T ss_pred HHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHHHHHhhCC-CcEEEEeeccchheeeeeeeeecC
Confidence 9999999999999998877433 34688999999999999999999988654 789999999999987655555545
Q ss_pred CcccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEE
Q 010114 312 PQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIK 389 (518)
Q Consensus 312 ~~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~ 389 (518)
.....++|.|+++++++|+| +.+.+++.|+ .|||++ ++.++.+| +.+++.+...+ .++++||+|||+|+
T Consensus 343 ~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~--~GEl~v~g~~v~~GY--~~~p~~t~~~~-----~~g~~w~~TGDlg~ 413 (562)
T 3ite_A 343 DSDTRCIGHPLGDSVAHVLAPGSNEHVKKGM--AGELVIEGSLVANGY--LNRPDAKGFCD-----INGRKMYRTGDIVR 413 (562)
T ss_dssp TSCTTEEEEECTTCEEEEECTTSSCBCCTTS--CEEEEEESTTSCCEE--SSCTTCCSEEE-----ETTEEEEEEEEEEE
T ss_pred CCCCccccccCCCCeEEEEeCCCCCCCCCCC--ceEEEEeccccchhh--CCCcccccccc-----CCCCEEEecCCEEE
Confidence 55667899999999999999 5688899999 699999 77766653 22333333222 35678999999999
Q ss_pred EecCceEEEeeccCCeeeeCceecchhHHHHHHhhcC-cccceeeEEEeCCCCCCccEEEEEEEecCCCCC---------
Q 010114 390 RTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD-ESILETAAISVSPAGGGPEVLVIFVVLKKGFTS--------- 459 (518)
Q Consensus 390 ~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~-~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~--------- 459 (518)
+|+||+|+++||.||+||++|++|+|.+||++|. ++ |.+.+++|++.+++..+ +...++++...+...
T Consensus 414 ~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~-~~~~~~~~~~v~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~ 491 (562)
T 3ite_A 414 MDADSSILFLGRKDEQVKVRGQRLELGEVSEVIR-SLSPTDIDVVTLLLNHPGTS-KQFLVSFVASSGAAVRGELRWINE 491 (562)
T ss_dssp ECTTSCEEEEEEC-------------------------------------------------------------------
T ss_pred EcCCCeEEEEccccCEEeECcEEECHHHHHHHHH-hcCCCceeEEEEEecCCCCc-ceEEEEEEeccccccccccccccc
Confidence 9999999999999999999999999999999998 65 88888888888887777 444444444432221
Q ss_pred ChhHHHHHHHHHHHhccCCccccceEEEecCCCCC-CCchhHHHHHHHHHhcc
Q 010114 460 QPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRT-ASNKLLRRVLRDQIKHE 511 (518)
Q Consensus 460 ~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t-~~GKv~R~~l~~~~~~~ 511 (518)
+.+.+.+.++++++++|+.|++|+.|+++++||+| ++||++|++|++++++.
T Consensus 492 ~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~~ 544 (562)
T 3ite_A 492 NYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHTL 544 (562)
T ss_dssp -----------------------------------------------------
T ss_pred chhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhcc
Confidence 12234456777788999999999999999999998 89999999999998753
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1.7e-66 Score=542.79 Aligned_cols=467 Identities=18% Similarity=0.201 Sum_probs=368.8
Q ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchh-------HHHHHHHHHhcCc
Q 010114 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA-------AREIATRLRVSKA 72 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~-------~~~i~~~l~~~~~ 72 (518)
+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++ .+++.++++.+++
T Consensus 50 ~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~ 129 (576)
T 3gqw_A 50 LEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQP 129 (576)
T ss_dssp EEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCC
T ss_pred EcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCC
Confidence 59999999999999999999 999999999999999999999999999999999999988 7899999999999
Q ss_pred eEEEechhhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEE
Q 010114 73 KGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI 152 (518)
Q Consensus 73 ~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 152 (518)
+++|+++... .................. .+.+..... ........+++++++
T Consensus 130 ~~ii~~~~~~------~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~-------~~~~~~~~~~d~a~i 181 (576)
T 3gqw_A 130 AAIITGDEWL------PLVNAATHDNPELHVLSH---------------AWFKALPEA-------DVALQRPVPNDIAYL 181 (576)
T ss_dssp SEEEECGGGH------HHHHHHGGGCTTCEEEEH---------------HHHHTSCCC-------CCCCCCCCTTSEEEE
T ss_pred CEEEecHHHH------HHHHHhhccCCcceecch---------------hhhhccccc-------ccccCCCCCCCeEEE
Confidence 9999987543 222222222111111100 011111100 111222356899999
Q ss_pred EeccCCCCCCceEEeccchhHHHhhhcccc-ccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCC---CChhH
Q 010114 153 LFSSGTTGEPKAIPWTQLSSIRCTAEGWAH-IDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---PLERS 227 (518)
Q Consensus 153 ~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~-~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~---~~~~~ 227 (518)
+|||||||.||||+++|.+++.++...... +++.++|++++.+|++|.+|+.. ++.++..|+++++.+.. .++..
T Consensus 182 ~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~ 261 (576)
T 3gqw_A 182 QYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQ 261 (576)
T ss_dssp ECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTH
T ss_pred EeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHH
Confidence 999999999999999999999887765443 78899999999999999999976 77889999998887642 36788
Q ss_pred HHHHHHHcCccEEEechHHHHHHHhccc---CCCCCccchhhhhccCCCCCchhhhHhhhccc-----cCceeccccccc
Q 010114 228 FGKFVQDAGVTVLGTVPSLVKAWRNTNC---LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW-----YNAIIESCGGTE 299 (518)
Q Consensus 228 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~---~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~-----~~~i~~~yg~tE 299 (518)
+++.++++++|+++++|++++.+.+... ....+++++|.+++|||++++++.+++.+.++ +.++++.||+||
T Consensus 262 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE 341 (576)
T 3gqw_A 262 WLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAE 341 (576)
T ss_dssp HHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGG
T ss_pred HHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCccc
Confidence 9999999999999999999988866533 34567899999999999999999999887764 678999999999
Q ss_pred cceeEeecCCCCC---------------------------cccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cc
Q 010114 300 LSSAYIQGSLLQP---------------------------QAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FP 351 (518)
Q Consensus 300 ~~~~~~~~~~~~~---------------------------~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~ 351 (518)
+++.+........ ....++|+|+++++++|+|++|++++.|+ +|||++ ++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~--~GEl~v~g~ 419 (576)
T 3gqw_A 342 NALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRNEAGMPVAERV--VGHICISGP 419 (576)
T ss_dssp GSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEECTTSCBCCTTB--CEEEEEEST
T ss_pred ccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEECCCCCCCCCCC--eEEEEEeCc
Confidence 9987665543211 01237899999999999999999999999 699999 77
Q ss_pred cccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccce
Q 010114 352 LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE 431 (518)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~ 431 (518)
.++.+|. .++..+.. ...++||+|||+|++ +||+++++||.||+||++|++|+|.+||++|. +||+|.+
T Consensus 420 ~~~~gY~--~~~~~~~~-------~~~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~ 488 (576)
T 3gqw_A 420 SLMSGYF--GDQVSQDE-------IAATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAE-QEPEIHS 488 (576)
T ss_dssp TSCCCBT--TCHHHHHH-------HHHHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHHHHT-TSSSCCT
T ss_pred ccccccc--CCcccccc-------ccCCCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHHHHHH-hCccccc
Confidence 7666532 22222211 134679999999999 79999999999999999999999999999997 9999999
Q ss_pred eeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhcc-CCccccceEEEec--CCCCCCCchhHHHHHHHHH
Q 010114 432 TAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKL-NPLFKVSLVKVVP--EFPRTASNKLLRRVLRDQI 508 (518)
Q Consensus 432 ~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l-~~~~~p~~i~~v~--~~P~t~~GKv~R~~l~~~~ 508 (518)
++|++..++.. ...+++..... .+...+.+.+.+.+++ +.++.|..+.+++ +||+|++||++|++|++++
T Consensus 489 ~~vv~~~~~~~---~~~~~~~~~~~----~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~~GKi~r~~l~~~~ 561 (576)
T 3gqw_A 489 GDAIAFVTAQE---KIILQIQCRIS----DEERRGQLIHALAARIQSEFGVTAAIDLLPPHSIPRTSSGKPARAEAKKRY 561 (576)
T ss_dssp TSEEEEECTTS---CEEEEEECCCC----CHHHHHHHHHHHHHHHHHHHSCCEEEEEECSSCSCBCTTSSBCHHHHHHHH
T ss_pred ccEEEEEcCCc---cEEEEEEEecC----chhHHHHHHHHHHHHHHHHhCCceeEEEECCCCcCcCCCccchHHHHHHHH
Confidence 99998876643 34445554432 2233344444455556 5688898888887 8999999999999999999
Q ss_pred hcccccc
Q 010114 509 KHELSVR 515 (518)
Q Consensus 509 ~~~~~~~ 515 (518)
.+++...
T Consensus 562 ~~~~~~~ 568 (576)
T 3gqw_A 562 QKAYAAS 568 (576)
T ss_dssp HHHHTCC
T ss_pred HHHhhhc
Confidence 8877654
No 31
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=2.3e-54 Score=421.28 Aligned_cols=317 Identities=17% Similarity=0.142 Sum_probs=266.8
Q ss_pred CCEEEEEeccCCCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChh
Q 010114 147 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLER 226 (518)
Q Consensus 147 ~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~ 226 (518)
|++++|+|||||||.||||+++|+++++++......++++++|++++.+|++|++|+..++.++..|+++++.++..+
T Consensus 37 d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~-- 114 (358)
T 4gs5_A 37 GAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN-- 114 (358)
T ss_dssp TCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC--
T ss_pred CCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc--
Confidence 789999999999999999999999999998888888999999999999999999999888889999999999876543
Q ss_pred HHHHHHHHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEee
Q 010114 227 SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ 306 (518)
Q Consensus 227 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~ 306 (518)
.++.|+++++|++.++|++++.+++... ...++++||.+++||+++++++.+++.+. +.++++.||+||+++.+..
T Consensus 115 -~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~~ 190 (358)
T 4gs5_A 115 -PLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVAL 190 (358)
T ss_dssp -TTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEEE
T ss_pred -HHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceeec
Confidence 3567889999999999999999988764 44578999999999999999999998764 6889999999999876554
Q ss_pred cCCCCCcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeeecccccCCccccccccccceeeeCCCCCCCceeccccc
Q 010114 307 GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGD 386 (518)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD 386 (518)
... .....+.+|.+.|++.+.+.+ .||+++.... ..++||+|||
T Consensus 191 ~~~-~~~~~g~~~~~~pgv~~~~~~------------~Gel~~~g~~-----------------------~~~g~~~TGD 234 (358)
T 4gs5_A 191 KAL-NGPEASELYVFLPGIQYGVDE------------RGCLHISGAV-----------------------TNGQTVQTND 234 (358)
T ss_dssp EEC-SSTTCCSCEEECTTCEEEECT------------TSEEEEESGG-----------------------GTTCCEEEEE
T ss_pred ccc-cccccceeeccCCCeEEEecC------------cCceEEeccc-----------------------ccCcceecCC
Confidence 443 334567888999999887644 3898873211 2346899999
Q ss_pred eEEEecCceEEEeeccCCeeeeCceecchhHHHHHHh--hcCcccceeeEE-EeCCCCCCccEEEEEEEecCCCCCChhH
Q 010114 387 IIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD--QADESILETAAI-SVSPAGGGPEVLVIFVVLKKGFTSQPDK 463 (518)
Q Consensus 387 ~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~--~~~~~v~~~~vv-~~~~~~~g~~~~~~~v~~~~~~~~~~~~ 463 (518)
+|++|+|| ++++||.||+||++|++|+|.+||++|. ..||.|.+++|+ +.+++..| +.++++|+..+ .+.
T Consensus 235 lg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~g-e~~~a~v~~~~-----~~~ 307 (358)
T 4gs5_A 235 LVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLG-QKLVLVIENAM-----PEA 307 (358)
T ss_dssp EEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTE-EEEEEEEESCC-----CHH
T ss_pred ccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCC-EEEEEEEECCC-----CCc
Confidence 99999988 5567999999999999999999998773 158999999887 56677777 88888887543 244
Q ss_pred HHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhccc
Q 010114 464 LKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 512 (518)
Q Consensus 464 l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~ 512 (518)
..+.++++++++|+.|++|+.|+++++||+|++|||+|++|++++++..
T Consensus 308 ~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~~ 356 (358)
T 4gs5_A 308 LTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDSS 356 (358)
T ss_dssp HHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC---
T ss_pred CHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhhc
Confidence 5566777788899999999999999999999999999999999987654
No 32
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=3.3e-52 Score=425.05 Aligned_cols=368 Identities=17% Similarity=0.144 Sum_probs=280.5
Q ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEeccc---chhHHHHHHHHHhcCceEEE
Q 010114 1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD---SFAAREIATRLRVSKAKGIF 76 (518)
Q Consensus 1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~---~~~~~~i~~~l~~~~~~~ii 76 (518)
+||+||.++++++|++|++. + +||+|+++++|++++++++|||+++|++++|+++ .++.+++.+++++++++++|
T Consensus 59 ~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi 137 (480)
T 3t5a_A 59 LTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAIL 137 (480)
T ss_dssp EEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEE
T ss_pred EcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEE
Confidence 59999999999999999999 8 9999999999999999999999999999999999 78899999999999999999
Q ss_pred echhhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEecc
Q 010114 77 TQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSS 156 (518)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS 156 (518)
+++... ..+........... ....+.+..+... ...........++++++|+|||
T Consensus 138 ~~~~~~------~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~d~a~i~~TS 192 (480)
T 3t5a_A 138 TTSSAV------DDVVQHVARRPGES--------------PPSIIEVDLLDLD-----APNGYTFKEDEYPSTAYLQYTS 192 (480)
T ss_dssp ECTTTH------HHHHHTCC--------------------CCEEEEGGGSCTT-----CC---CCCCSSCCSEEEEECC-
T ss_pred eChhHH------HHHHHHHhcccccc--------------ccceeEecccccc-----cccCCCCCCCCCCceEEEEecC
Confidence 987532 11111111110000 0000011111000 0111222334678999999999
Q ss_pred CCCCCCceEEeccchhHHHhhhccccccCCC------CcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCC---CChh
Q 010114 157 GTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV------GDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---PLER 226 (518)
Q Consensus 157 GtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~------~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~---~~~~ 226 (518)
||||.||||+++|.+++.++......+.+.. +|++++.+|++|.+|+.. ++.+++.|+++++.++. .++.
T Consensus 193 GTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~ 272 (480)
T 3t5a_A 193 GSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPA 272 (480)
T ss_dssp -----CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTH
T ss_pred CCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHH
Confidence 9999999999999999998887777777776 899999999999999865 88999999999998643 3678
Q ss_pred HHHHHHHHcCccEEEechHHHHHHHhc----ccCCCCCccchhhhhccCCCCCchhhhHhhhccc-----cCceeccccc
Q 010114 227 SFGKFVQDAGVTVLGTVPSLVKAWRNT----NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAW-----YNAIIESCGG 297 (518)
Q Consensus 227 ~~~~~i~~~~~t~l~~~P~~~~~l~~~----~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~-----~~~i~~~yg~ 297 (518)
.+++.++++++| +.++|+++..++.. ......++++||.+++|||++++++.+++.+.++ +.++++.||+
T Consensus 273 ~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~ 351 (480)
T 3t5a_A 273 RWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWL 351 (480)
T ss_dssp HHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEE
T ss_pred HHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccc
Confidence 999999999999 88889888887764 3345677899999999999999999999988763 4579999999
Q ss_pred cccceeEeecCCCC------------------------CcccCCCCcccccccEEEECCC-CCCCCCCCCeeeeeee-cc
Q 010114 298 TELSSAYIQGSLLQ------------------------PQAFGAFSTATMTAGLVILDEC-GVPYPDDQPCVGEVGL-FP 351 (518)
Q Consensus 298 tE~~~~~~~~~~~~------------------------~~~~~~~g~~~~~~~~~i~~~~-g~~~~~~~~~~Gel~v-~~ 351 (518)
||+++.++...... .....++|+|++ ++++|+|++ |++++.|+ +|||++ ++
T Consensus 352 TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~--~GEl~v~g~ 428 (480)
T 3t5a_A 352 AEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGT--VGEIWVHGD 428 (480)
T ss_dssp TTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTB--CEEEEEEST
T ss_pred cccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCC--EEEEEEeCC
Confidence 99998766554332 134468999999 999999965 79999999 699999 77
Q ss_pred cccCCccccccccccceeeeCC-----CCCCCceeccccceEEEecCceEEEeec
Q 010114 352 LYLGASDRLLNADHEEVYFRGM-----PMYKGMCLRRHGDIIKRTVGGYIIVQGR 401 (518)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~TGD~~~~~~~g~l~~~gR 401 (518)
.++.+| +.+++.+...|... ...++++||+|||+|++| ||+|+|+||
T Consensus 429 ~v~~GY--~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 429 NVANGY--WQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp TSCCCB--TTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred cccccc--ccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 777664 33444454444321 122367899999999997 999999998
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=1.2e-48 Score=393.05 Aligned_cols=323 Identities=19% Similarity=0.217 Sum_probs=257.8
Q ss_pred CCC-CCEEEEEeccCCCCCCceEEeccchhHHHhhhc---cccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEE
Q 010114 144 NPV-DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLAL 218 (518)
Q Consensus 144 ~~~-~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~---~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~ 218 (518)
.++ +++++++|||||||.||+|+++|.++..+.... ...+++.++|+++..+|+.|..+... ++.++..|+++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 345 889999999999999999999999997766544 33457899999999999987666654 7888999999988
Q ss_pred ecCCCChhHHHHHHHHcCccEEEechHHHHHHHhcccCCCCC--ccchhhhhccCCCCCchhhhHhhhccccCceecccc
Q 010114 219 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD--WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 296 (518)
Q Consensus 219 ~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~--l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg 296 (518)
.+ ..++..+++.|+++++|+++++|+++..|++.....+.+ ++++|.+++|||++++++.+++.+.+ ++++++.||
T Consensus 162 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 239 (436)
T 3qov_A 162 AA-AGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSFG 239 (436)
T ss_dssp CC-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred CC-CCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecCc
Confidence 76 457899999999999999999999999998876545444 78999999999999999999999887 789999999
Q ss_pred cccccee-EeecCCCCCcccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeeecccccCCccccccccccceeeeCCC
Q 010114 297 GTELSSA-YIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 374 (518)
Q Consensus 297 ~tE~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (518)
+||+++. +..... .....+.+.+++.++|+| ++|++++.|+ .|||+++..... .
T Consensus 240 ~TE~~~~~~~~~~~----~~~g~~~~~~~~~v~i~d~~~g~~~~~g~--~Gel~v~~~~~~-------------~----- 295 (436)
T 3qov_A 240 MTEMNGPGVAFECQ----EQNGMHFWEDCYLVEIIDPETGEPVPEGE--IGELVLTTLDRE-------------M----- 295 (436)
T ss_dssp EGGGTEEEEEEECT----TCSSEEECTTTEEEEEECTTTCSBCSTTC--CEEEEEEESSCC-------------S-----
T ss_pred chhhcCCeeEEecC----CCCeeEEccCceEEEEEECCCCCCCCCCC--ceEEEEeccCcC-------------C-----
Confidence 9999543 222211 112356677899999999 8999999999 699999431100 0
Q ss_pred CCCCceeccccceEEEecCc------e---EEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCcc
Q 010114 375 MYKGMCLRRHGDIIKRTVGG------Y---IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 445 (518)
Q Consensus 375 ~~~~~~~~~TGD~~~~~~~g------~---l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~ 445 (518)
-..+||+|||+|+++++| + +++.||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..+ +
T Consensus 296 --~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~-~~p~v~~~~vv~~~~~~~~-~ 371 (436)
T 3qov_A 296 --MPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILV-QFPELGSNYLITLETVNNQ-D 371 (436)
T ss_dssp --SCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHT-TCTTEEEEEEEEEEEETTE-E
T ss_pred --ceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHH-hCcCcCCcEEEEEEcCCCC-c
Confidence 123589999999999998 5 6999999999999999999999999997 9999999999999887767 8
Q ss_pred EEEEEEEecCCCCCC----hhHHHHHHHHHHHhccCCc-cccceEEEec--CCCCCCCchhHHH
Q 010114 446 VLVIFVVLKKGFTSQ----PDKLKMIFSKAIQSKLNPL-FKVSLVKVVP--EFPRTASNKLLRR 502 (518)
Q Consensus 446 ~~~~~v~~~~~~~~~----~~~l~~~~~~~~~~~l~~~-~~p~~i~~v~--~~P~t~~GKv~R~ 502 (518)
.+.++|++. +...+ .+++.+.+++ .|+.+ +.|..+.+++ +||+|+ ||++|.
T Consensus 372 ~l~a~v~~~-~~~~~~~~~~~~l~~~l~~----~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 372 EMIVEVELS-DLSTDNYIELEKIRRDIIR----QLKDEILVTPKVKLVKKGSLPQSE-GKAVRV 429 (436)
T ss_dssp EEEEEEEEC-TTCCCCHHHHHHHHHHHHH----HHHHHHSSCCEEEEECTTCCC--------CE
T ss_pred EEEEEEEEc-CccccchhhHHHHHHHHHH----HHHHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence 899999998 54444 3455555554 44455 6788999998 999999 999985
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=4e-47 Score=382.78 Aligned_cols=327 Identities=18% Similarity=0.144 Sum_probs=260.2
Q ss_pred CCCCCEEEEEeccCCCCCCceEEeccchhHHHhhhcc---ccccCCCCcEEEeecCch-hhhhhHHHHHhhhcCcEEEEe
Q 010114 144 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLG-WVMGPVILFSSFLNGATLALY 219 (518)
Q Consensus 144 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~-~~~~~~~~~~~l~~G~~~~~~ 219 (518)
.+++++++++|||||||.||+|+++|.++..+..... ..+++.++|++++.+|+. |..++...+.++..|+++++.
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 3568899999999999999999999999877654332 356789999999999985 666666688889999999887
Q ss_pred cCCCChhHHHHHHHHcCccEEEechHHHHHHHhcccCCCCC--ccchhhhhccCCCCCchhhhHhhhccccCceeccccc
Q 010114 220 QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD--WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGG 297 (518)
Q Consensus 220 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~--l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~ 297 (518)
+. .++..+++.|+++++|+++++|+++..|++.....+.+ ++++|.+++|||++++++.+++.+.+ ++++++.||+
T Consensus 169 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~ 246 (443)
T 2y4o_A 169 SG-GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGL 246 (443)
T ss_dssp CS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEEE
T ss_pred CC-CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccCc
Confidence 64 57899999999999999999999999998865444443 47999999999999999999998777 7889999999
Q ss_pred ccc-ce-eEeecCCCCCcccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeeecccccCCccccccccccceeeeCCC
Q 010114 298 TEL-SS-AYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 374 (518)
Q Consensus 298 tE~-~~-~~~~~~~~~~~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (518)
||+ +. +...+... ....+.+.+++.++|+| ++|++++.|+ .|||+++..... .+
T Consensus 247 TE~~g~~~~~~~~~~----~~g~~~~~~~~~~~i~d~~~g~~~~~G~--~Gel~v~~~t~~-------------~~---- 303 (443)
T 2y4o_A 247 SEVMGPGVACECVET----KDGPVIWEDHFYPEIIDPVTGEVLPDGS--QGELVFTSLTKE-------------AM---- 303 (443)
T ss_dssp TTTTEEEEEEECTTT----CCSEEECTTTEEEEEECTTTCCBCCTTC--CEEEEEEESSCS-------------SS----
T ss_pred hhhcCCeEEeccCCC----CCceEEccCCeEEEEEcCCCCCCCCCCC--ceEEEEeCCCcc-------------cC----
Confidence 997 43 33333221 11244567899999999 5799999999 699999431000 01
Q ss_pred CCCCceeccccceEEEecC-ceE-----EEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEE
Q 010114 375 MYKGMCLRRHGDIIKRTVG-GYI-----IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 448 (518)
Q Consensus 375 ~~~~~~~~~TGD~~~~~~~-g~l-----~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~ 448 (518)
..+||+|||+|+++++ |++ ++.||.||+||++|++|+|.+||++|. +||+|.++++++.+++..+ +.+.
T Consensus 304 ---p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~~~ 378 (443)
T 2y4o_A 304 ---PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVV-ALPLLSGQFQITLSRDGHM-DRLD 378 (443)
T ss_dssp ---CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEEETTE-EEEE
T ss_pred ---hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHH-hCcCcCccEEEEEecCCCC-ceEE
Confidence 2358999999999999 986 899999999999999999999999998 9999999999988776666 7888
Q ss_pred EEEEecC--CCC---CChhHHHHHHHHHHHhccCCc-cccceEEEe--cCCCCCCCchhHHHHH
Q 010114 449 IFVVLKK--GFT---SQPDKLKMIFSKAIQSKLNPL-FKVSLVKVV--PEFPRTASNKLLRRVL 504 (518)
Q Consensus 449 ~~v~~~~--~~~---~~~~~l~~~~~~~~~~~l~~~-~~p~~i~~v--~~~P~t~~GKv~R~~l 504 (518)
++|++.+ +.. .+.+++.+. +.++|+.+ ..|..|.++ ++||+|++||++|...
T Consensus 379 a~v~~~~~~~~~~~~~~~~~l~~~----l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~ 438 (443)
T 2y4o_A 379 LAVELRSEAAASVTDGERAALARE----LQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVID 438 (443)
T ss_dssp EEEEECHHHHTTCCHHHHHHHHHH----HHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEE
T ss_pred EEEEECCcccccchhhHHHHHHHH----HHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEe
Confidence 9998865 221 122344444 55556655 377788888 5999999999998653
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=8.6e-47 Score=379.72 Aligned_cols=328 Identities=18% Similarity=0.154 Sum_probs=260.6
Q ss_pred CCCCCEEEEEeccCCCCCCceEEeccchhHHHhhhcc---ccccCCCCcEEEeecCc-hhhhhhHHHHHhhhcCcEEEEe
Q 010114 144 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNL-GWVMGPVILFSSFLNGATLALY 219 (518)
Q Consensus 144 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl-~~~~~~~~~~~~l~~G~~~~~~ 219 (518)
.+++++++++|||||||.||+|+++|.++..+..... ..+++.++|++++.+|+ .|..++...+.++..|+++++.
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 3568899999999999999999999999877654322 34678899999999998 5777766688899999999876
Q ss_pred cCCCChhHHHHHHHHcCccEEEechHHHHHHHhcccCCCCC--ccchhhhhccCCCCCchhhhHhhhccccCceeccccc
Q 010114 220 QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD--WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGG 297 (518)
Q Consensus 220 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~--l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~ 297 (518)
+ ..++..+++.|+++++|+++++|+++..|++.....+.+ ++++|.+++|||++++++.+++.+.+ ++++++.||+
T Consensus 167 ~-~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~ 244 (437)
T 2y27_A 167 G-GGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYGL 244 (437)
T ss_dssp C-SCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEE
T ss_pred C-CCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCCc
Confidence 6 457899999999999999999999999998865444443 47999999999999999999998777 7889999999
Q ss_pred ccc-ce-eEeecCCCCCcccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeeecccccCCccccccccccceeeeCCC
Q 010114 298 TEL-SS-AYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 374 (518)
Q Consensus 298 tE~-~~-~~~~~~~~~~~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (518)
||+ +. +...+.. .. ..++.+.+++.++|+| ++|++++.|+ .|||+++.... ..+
T Consensus 245 TE~~g~~~~~~~~~-~~---~g~~~~~~~~~~~i~d~~~g~~~~~g~--~Gel~v~~~t~-------------~~~---- 301 (437)
T 2y27_A 245 SEVMGPGVASECVE-TK---DGPTIWEDHFYPEIIDPETGEVLPDGE--LGELVFTSLTK-------------EAL---- 301 (437)
T ss_dssp TTTTEEEEEECCTT-TC---SSCEECTTTEEEEEECTTTCCBCCTTC--CEEEEEEESSC-------------SSS----
T ss_pred hhhcCCeeEEecCC-CC---CceeEccCceEEEEEcCCCCCCCCCCC--ccEEEEecCCc-------------CCc----
Confidence 998 43 3333322 11 1255677899999999 5699999999 69999943100 001
Q ss_pred CCCCceeccccceEEEec-CceE-----EEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEE
Q 010114 375 MYKGMCLRRHGDIIKRTV-GGYI-----IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 448 (518)
Q Consensus 375 ~~~~~~~~~TGD~~~~~~-~g~l-----~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~ 448 (518)
..+||+|||+|++++ +|++ ++.||.||+|+++|++|+|.+||++|. +||+|.++++++.+++..+ +.+.
T Consensus 302 ---~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~l~ 376 (437)
T 2y27_A 302 ---PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLL-KQRALAPHYQIVLTKEGPL-DVLT 376 (437)
T ss_dssp ---CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHT-TCTTBCSCCEEEEEEETTE-EEEE
T ss_pred ---hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHH-hCcCcCccEEEEEeecCCC-ceEE
Confidence 235899999999999 6985 899999999999999999999999997 9999999999988776666 8899
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHHhccCCc-cccceEEEe--cCCCCCCCchhHHHH
Q 010114 449 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVSLVKVV--PEFPRTASNKLLRRV 503 (518)
Q Consensus 449 ~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~-~~p~~i~~v--~~~P~t~~GKv~R~~ 503 (518)
++|++.++...+. .-.+.+++.++++|+.+ ..|..|.++ ++||+|+ ||++|..
T Consensus 377 a~v~~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 377 LNVEPCPETAPDT-AAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EEECBCTTTTTCH-HHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEEEECCCccchh-hhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 9998876543111 11223444455666666 477888888 5999999 9999864
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=9.5e-31 Score=256.80 Aligned_cols=237 Identities=15% Similarity=0.078 Sum_probs=179.6
Q ss_pred CCCCCEEEEEeccCCCCCCceEEeccchhHHHhh---hccccccCCCCcEEEeecCc-hhhhhhHHHHHhhhcCcEEEEe
Q 010114 144 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNL-GWVMGPVILFSSFLNGATLALY 219 (518)
Q Consensus 144 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~---~~~~~~~~~~~d~~l~~~pl-~~~~~~~~~~~~l~~G~~~~~~ 219 (518)
.+++++++++|||||||.||+|.++|.++..+.. ......++.++|++++.+|+ .|..++...+.++..|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 3668899999999999999999999999988877 34455678899999999999 89999888777788999 4444
Q ss_pred cCCCChh-----------------------HHHHHHHHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCc
Q 010114 220 QGSPLER-----------------------SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNV 276 (518)
Q Consensus 220 ~~~~~~~-----------------------~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~ 276 (518)
. .+++. .+++.|+++++|++.++|+++..|++.......+++++|.+++|||++++
T Consensus 167 ~-~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 167 I-DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL 245 (369)
T ss_dssp C-CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred c-cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence 3 44555 77789999999999999999999988754344567899999999999999
Q ss_pred hhhhHhh-hccccCceeccccccccceeEeecCCCCCcccCCCCcc------cccccEEEECC-CCCCCCCCCCeeeeee
Q 010114 277 DDDLWLS-SKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA------TMTAGLVILDE-CGVPYPDDQPCVGEVG 348 (518)
Q Consensus 277 ~~~~~~~-~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~i~~~-~g~~~~~~~~~~Gel~ 348 (518)
++.+++. +.++++++++.||+||+++++..+.. .++|.| .++++++|+|+ +|++++.|+ .|||+
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~------~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~--~GEl~ 317 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRSLLI------TSESQQVIYDSFSPFITYDVVDSITAQTVEYGE--RGNVI 317 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB------CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTC--EEEEE
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceecccc------ccCCCcccccCCCCCeEEEEECCCCCcCCCCCC--ceEEE
Confidence 9999999 88878999999999999877644332 147888 99999999997 999999999 69999
Q ss_pred ecccccCCccccccccccceeeeCCCCCCCceeccccceEEEecC--c-------eEEEeeccCCeeeeCce
Q 010114 349 LFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG--G-------YIIVQGRADDTMNLGGI 411 (518)
Q Consensus 349 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~--g-------~l~~~gR~~d~i~~~G~ 411 (518)
++...... .+ ..|+|||++++.+. | .+..++|.++..++.|.
T Consensus 318 vt~l~~~~------------~l---------~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 318 VTHLSPWA------------FY---------PRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEETTE------------EE---------EEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEcCccc------------cc---------ccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 94321110 11 13899999988643 2 34567777777777764
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.59 E-value=1.8e-15 Score=119.42 Aligned_cols=96 Identities=22% Similarity=0.335 Sum_probs=74.4
Q ss_pred eccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChh---HHHHHHHHHHHhcc
Q 010114 400 GRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPD---KLKMIFSKAIQSKL 476 (518)
Q Consensus 400 gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~---~l~~~~~~~~~~~l 476 (518)
+|.||+|+++|.||+|.+||++|. +||+|.++++++++++..+ +.+.++|+..++...+.. ++.+.+++.+.+.+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~-~~p~v~~~~vv~v~~~~~~-~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~ 78 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILL-QFKELGSDYLITLETAESN-DEMTVEVELSQLFTDDYGRLQALTREITRQLKDEI 78 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHH-TCTTEEEEEEEEEEEETTE-EEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCEEEEECCEEECHHHHHHHHH-hCCCcccceEEEEeccccc-eeEEEEEEEeeccccccchhhhhHHHHHHHHHHHh
Confidence 599999999999999999999997 9999999999999988888 889999998886655543 34555555555444
Q ss_pred CCccccceEEEec--CCCCCCCchhHH
Q 010114 477 NPLFKVSLVKVVP--EFPRTASNKLLR 501 (518)
Q Consensus 477 ~~~~~p~~i~~v~--~~P~t~~GKv~R 501 (518)
. .|..+.+++ +|||| +||++|
T Consensus 79 g---v~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 79 L---VTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp S---SCCEEEEECTTCSCCC----CCC
T ss_pred C---CccceEEEcCCeecCC-CCCcch
Confidence 2 344577774 89998 799987
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.55 E-value=5.6e-15 Score=116.35 Aligned_cols=96 Identities=20% Similarity=0.312 Sum_probs=75.4
Q ss_pred eccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCC----ChhHHHHHHHHHHHhc
Q 010114 400 GRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS----QPDKLKMIFSKAIQSK 475 (518)
Q Consensus 400 gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~----~~~~l~~~~~~~~~~~ 475 (518)
||.||+|+++|.+|+|.+||++|. .||+|.++++++++++.++ +.+.+++++ ++... +.+++.+.+++.+.+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~-~~p~v~~~~~v~v~~~~~~-e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~ 77 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILL-QFKELGSDYLITLETAESN-DEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDE 77 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHH-TCTTEEEEEEEEEEEETTE-EEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHH-hCCCcCCcEEEEEEcCCCc-eEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHh
Confidence 799999999999999999999998 8999998988888877666 889999998 54322 3456777888777665
Q ss_pred cCCccccceEEEec--CCCCCCCchhHHH
Q 010114 476 LNPLFKVSLVKVVP--EFPRTASNKLLRR 502 (518)
Q Consensus 476 l~~~~~p~~i~~v~--~~P~t~~GKv~R~ 502 (518)
+. .+..+.+++ +||+| +||++|.
T Consensus 78 ~~---~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 78 IL---VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp HS---SCCEEEEECTTCSCCC----CCCE
T ss_pred hC---CceEEEEECCCCccCC-CCceEEE
Confidence 53 234788897 99999 9999873
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.87 E-value=2.3e-08 Score=100.73 Aligned_cols=144 Identities=13% Similarity=0.057 Sum_probs=82.4
Q ss_pred ccc---hhhhhccCCCCCchhhhHhhhccccCcee-ccccccccceeEeecCCCCCcccCCCCc-cccc-ccEEEEC--C
Q 010114 261 WTK---IRSFASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQPQAFGAFST-ATMT-AGLVILD--E 332 (518)
Q Consensus 261 l~~---lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~-~~yg~tE~~~~~~~~~~~~~~~~~~~g~-~~~~-~~~~i~~--~ 332 (518)
+|+ +..++.|| + ......++..+++.+++ ..|++||... .+.. .....++..+. .+++ .-.+.++ +
T Consensus 296 WPnl~~l~~~~~G~--~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~-gi~~--~p~~~~~~~~~~L~~~~~ffEFip~~~ 369 (581)
T 4eql_A 296 WPNTKYIETVVTGS--M-GQYVPMLNYYCNDLPLVSTTYGSSETTF-GINL--DPLCKPEDVSYTFMPNMSYFEFIPMDG 369 (581)
T ss_dssp STTCCEEEEECSGG--G-GGGHHHHHHHHTTCCEECCEEECSSCEE-EECS--CTTSCGGGCCEEECTTSSEEEEEECST
T ss_pred CCCCcEEEEEcCCC--h-HHHHHHHHHHcCCCccccCcccccccee-eecc--CCCCCcccCceeecCCcEEEEEEeccc
Confidence 567 44456666 2 33334455555566766 9999999532 2211 11111111121 1222 2233443 2
Q ss_pred C--C-----CCCCCCCCeeeeeeecccccCCccccccccccceeeeCCCCCCCceeccccceEEEec----CceEEEeec
Q 010114 333 C--G-----VPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV----GGYIIVQGR 401 (518)
Q Consensus 333 ~--g-----~~~~~~~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~~~gR 401 (518)
. . ..+..|+ .+|++++.. ++ .|+ |++||++++.. ..++.|+||
T Consensus 370 ~~~~~~v~l~eVe~G~--~YelViTt~--~G------------L~R----------Yr~GD~v~v~~f~~~~p~i~f~gR 423 (581)
T 4eql_A 370 GDKNDVVDLEDVKLGC--TYEPVVTNF--AG------------LYR----------MRVGDIVLVTGFYNNAPQFKFVRR 423 (581)
T ss_dssp TCCSSCEEGGGCCTTC--EEEEEEECS--SS------------CCS----------EECCEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCcEeCHHHcCCCc--eEEEEEeec--cc------------eee----------EEcCCEEEEcccCCCCcEEEEEEe
Confidence 1 1 1244565 588877322 11 233 89999999986 468999999
Q ss_pred cCCeeeeCceecchhHHHHHHhhcC-----c--ccceeeEEE
Q 010114 402 ADDTMNLGGIKTSSVEIERVCDQAD-----E--SILETAAIS 436 (518)
Q Consensus 402 ~~d~i~~~G~~v~~~~iE~~l~~~~-----~--~v~~~~vv~ 436 (518)
.++++.+.|++++..+||+++.+.. . .|.|..+..
T Consensus 424 ~~~~l~~~Gekl~~~~v~~al~~a~~~l~~~g~~l~eft~~~ 465 (581)
T 4eql_A 424 ENVVLSIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYA 465 (581)
T ss_dssp TTEEECSSSCCEEHHHHHHHHHHC--------------CEEE
T ss_pred cCCEEEeeeeECCHHHHHHHHHHHHHhhhhcCCEEEEEEEec
Confidence 9999999999999999999997433 1 256666654
No 40
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.85 E-value=3e-08 Score=99.56 Aligned_cols=163 Identities=13% Similarity=0.041 Sum_probs=92.4
Q ss_pred chHHHHHHHhcccCC-------CCCccchhhh--hccCCCCCchhhhHhhhccccCcee-ccccccccceeEeecCCCCC
Q 010114 243 VPSLVKAWRNTNCLE-------GLDWTKIRSF--ASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQP 312 (518)
Q Consensus 243 ~P~~~~~l~~~~~~~-------~~~l~~lr~i--~~~Ge~l~~~~~~~~~~~~~~~~i~-~~yg~tE~~~~~~~~~~~~~ 312 (518)
.|..++.+.+..... ..-+|++|++ +.+|.. ......++..+++.+++ ..|++||... .+.. .+.
T Consensus 276 ~~~~a~~l~~~~~~~~~~~g~i~~lWPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~-gi~~--~p~ 350 (581)
T 4epl_A 276 NPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEGWI-AANV--TPR 350 (581)
T ss_dssp CHHHHHHHHHHHHHSSTTTTHHHHHCTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTEEE-EECC--CTT
T ss_pred CHHHHHHHHHHhCCCCccccCHHHhCCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceeccceee-eeec--CCC
Confidence 455566665443222 1126677643 444532 22334455444566766 9999999533 2222 121
Q ss_pred cccCCCCc-cccc-ccEEEE--CCCC---------CCCCCCCCeeeeeeecccccCCccccccccccceeeeCCCCCCCc
Q 010114 313 QAFGAFST-ATMT-AGLVIL--DECG---------VPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGM 379 (518)
Q Consensus 313 ~~~~~~g~-~~~~-~~~~i~--~~~g---------~~~~~~~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (518)
..++..+. .+|+ .-++.+ ++.+ ..++.|+ .+|++++.. ++ .|+
T Consensus 351 ~~~~~~~~~L~p~~~ffEFiP~~~~~~~~~~~v~l~eve~G~--~YelviTt~--~G------------L~R-------- 406 (581)
T 4epl_A 351 LSPEEATFAVIPNLGYFEFLPVSETGEGEEKPVGLTQVKIGE--EYEVVITNY--AG------------LYR-------- 406 (581)
T ss_dssp SCTTTCCEEECTTSCEEEEEEC-------CCCEEGGGCCTTC--EEEEEEEST--TS------------CSS--------
T ss_pred CCccccceeecCCcEEEEEEecccccCCCCceeeHHHcCCCC--eEEEEEeec--cc------------eee--------
Confidence 11111111 1222 122233 3221 2455666 588887322 11 233
Q ss_pred eeccccceEEEecC----ceEEEeeccCCeeeeCceecchhHHHHHHhhcC-------cccceeeEEE
Q 010114 380 CLRRHGDIIKRTVG----GYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD-------ESILETAAIS 436 (518)
Q Consensus 380 ~~~~TGD~~~~~~~----g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~-------~~v~~~~vv~ 436 (518)
|++||++++..- ..+.|+||.++++++.|+++++.+||+++.+.. -.|.|..+..
T Consensus 407 --Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~ 472 (581)
T 4epl_A 407 --YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYI 472 (581)
T ss_dssp --EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEE
T ss_pred --EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEec
Confidence 899999999752 578999999999999999999999999997322 2366776665
No 41
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.85 E-value=5e-08 Score=98.38 Aligned_cols=55 Identities=24% Similarity=0.331 Sum_probs=45.4
Q ss_pred ccccceEEEec----CceEEEeeccCCeeeeCceecchhHHHHHHhhcC-----c--ccceeeEEE
Q 010114 382 RRHGDIIKRTV----GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD-----E--SILETAAIS 436 (518)
Q Consensus 382 ~~TGD~~~~~~----~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~-----~--~v~~~~vv~ 436 (518)
|++||+++++. ...+.|+||.++++++.|+++++.+||+++.+.. . .|.+..+..
T Consensus 412 Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~ 477 (609)
T 4b2g_A 412 YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFA 477 (609)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEE
T ss_pred eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEec
Confidence 89999999974 4689999999999999999999999999997322 2 356666654
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=87.32 E-value=2.8 Score=40.81 Aligned_cols=79 Identities=13% Similarity=0.129 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCC--CHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114 2 TYKELREQVMLVANALDTM-FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ 78 (518)
Q Consensus 2 Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~--~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~ 78 (518)
|.+.+...+..+++.+... +.++|++...++. ....+...++++..|+..++++.. +.+.+...+++.++.+++..
T Consensus 111 t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l~~~ 189 (437)
T 2y27_A 111 TAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGG-QTEKQVQLIQDFRPDIIMVT 189 (437)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCSC-CHHHHHHHHHHHCCSEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHhCCCEEEEC
Confidence 5667777776677766667 8999999998885 344455678888999998877654 67888999999999999988
Q ss_pred hhh
Q 010114 79 DFI 81 (518)
Q Consensus 79 ~~~ 81 (518)
+..
T Consensus 190 Ps~ 192 (437)
T 2y27_A 190 PSY 192 (437)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 43
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=86.45 E-value=3.1 Score=40.55 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCC--HHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114 2 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMT--VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ 78 (518)
Q Consensus 2 Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~--~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~ 78 (518)
|.+.+...+..+++.+... +.++|++...++-+ ...+...++++..|+..++++.. ..+.+...+++.++.+++..
T Consensus 113 t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l~~~ 191 (443)
T 2y4o_A 113 TARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKIILVT 191 (443)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEEEEC
Confidence 6677777777777767667 89999999988853 44455678888899998887654 77888899999999999988
Q ss_pred hhh
Q 010114 79 DFI 81 (518)
Q Consensus 79 ~~~ 81 (518)
+..
T Consensus 192 Ps~ 194 (443)
T 2y4o_A 192 PSY 194 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 44
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=85.98 E-value=3.1 Score=40.52 Aligned_cols=80 Identities=14% Similarity=0.062 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCC--CHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114 2 TYKELREQVMLVANALDTM-FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ 78 (518)
Q Consensus 2 Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~--~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~ 78 (518)
|.+.+...+..+++.+... +.++|++...++- ....+..+++++..|+..++.+.. .+..+...+++.++.+++..
T Consensus 107 th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~~~~~ 185 (436)
T 3qov_A 107 SQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTALHAI 185 (436)
T ss_dssp EHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCEEECC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCEEEEC
Confidence 5677777777777777777 9999999999874 345555678888999998877554 66888999999999999988
Q ss_pred hhhh
Q 010114 79 DFIL 82 (518)
Q Consensus 79 ~~~~ 82 (518)
+...
T Consensus 186 P~~~ 189 (436)
T 3qov_A 186 PSYA 189 (436)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 45
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=74.45 E-value=20 Score=35.88 Aligned_cols=103 Identities=11% Similarity=-0.006 Sum_probs=73.3
Q ss_pred CCCEEEEEeccC-CCCCCceEEeccchhHHHhhhc---cccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecC
Q 010114 146 VDAVVNILFSSG-TTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 221 (518)
Q Consensus 146 ~~~~~~i~~TSG-tTG~pK~v~~s~~~~~~~~~~~---~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~ 221 (518)
++.++++....+ ..+.. -.+|...+...+... ....++.++|++...++-+.. ....+++++..|+..+.+++
T Consensus 33 p~~~A~~~~~~~~~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~ 109 (549)
T 3g7s_A 33 GEKTAIISAEPKFPSEFP--ESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSID-YVMTIYALWRVAATPVPINP 109 (549)
T ss_dssp TTSEEEEEESSCCCCSSC--SEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECCT
T ss_pred CCceEEEeCCCccccccc--ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHhCCEEEccCC
Confidence 477777654322 12222 346666665544433 334578999999988886533 33448899999999999998
Q ss_pred CCChhHHHHHHHHcCccEEEechHHHHHHH
Q 010114 222 SPLERSFGKFVQDAGVTVLGTVPSLVKAWR 251 (518)
Q Consensus 222 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~ 251 (518)
.....++...+++.++..++..+.....+.
T Consensus 110 ~~~~~~l~~il~~~~~~~~i~~~~~~~~~~ 139 (549)
T 3g7s_A 110 MYKSFELEHILNDSEATTLVVHSMLYENFK 139 (549)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred CCCHHHHHHHHHhcCCCEEEEChHHHHHHH
Confidence 888899999999999999999887766554
No 46
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=70.34 E-value=18 Score=35.83 Aligned_cols=95 Identities=11% Similarity=-0.047 Sum_probs=71.6
Q ss_pred CCCEEEEEeccCCCCCCceEEeccchhHHHhhhccc---cccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCC
Q 010114 146 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 222 (518)
Q Consensus 146 ~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~---~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~ 222 (518)
++.++++. . +-.+|...+...+..... ..++.++|++...++-+.. ....+++++..|+..+.+++.
T Consensus 20 pd~~Al~~--~-------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~~~ 89 (509)
T 3ivr_A 20 PDRTAFMV--D-------GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSE-MIELIGAVALIGAILLPVNYR 89 (509)
T ss_dssp TTSEEEEE--T-------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEECCTT
T ss_pred CCceEEEE--C-------CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH-HHHHHHHHHHhCCEEEecCCC
Confidence 47777654 1 245787777665544333 4578899999988886533 334588999999999999988
Q ss_pred CChhHHHHHHHHcCccEEEechHHHHHH
Q 010114 223 PLERSFGKFVQDAGVTVLGTVPSLVKAW 250 (518)
Q Consensus 223 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l 250 (518)
...+.+...+++.++..++..+.....+
T Consensus 90 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 117 (509)
T 3ivr_A 90 LNADEIAFVLGDGAPSVVVAGTDYRDIV 117 (509)
T ss_dssp SCHHHHHHHHHHHCEEEEEECSTTHHHH
T ss_pred CCHHHHHHHHHhcCceEEEECcchhhhH
Confidence 8889999999999999999988766653
No 47
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=69.05 E-value=16 Score=36.43 Aligned_cols=98 Identities=12% Similarity=-0.022 Sum_probs=71.3
Q ss_pred CCCCEEEEEeccCCCCCCceEEeccchhHHHhhhcc---ccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecC
Q 010114 145 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 221 (518)
Q Consensus 145 ~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~ 221 (518)
.++.++++... +| -.+|...+...+.... ...++.++|++...++-+.. ....+++++..|+..+.+++
T Consensus 35 ~p~~~a~~~~~---~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLINGA---NG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPE-FVLAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEECC---CC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCEEeccCC
Confidence 35777765422 22 3467776655544333 34578999999988886533 33458899999999999998
Q ss_pred CCChhHHHHHHHHcCccEEEechHHHHHH
Q 010114 222 SPLERSFGKFVQDAGVTVLGTVPSLVKAW 250 (518)
Q Consensus 222 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l 250 (518)
.....++...+++.++..++..+.....+
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~ 135 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEKV 135 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHHH
Confidence 88889999999999999999887655544
No 48
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=66.88 E-value=28 Score=34.39 Aligned_cols=97 Identities=9% Similarity=-0.063 Sum_probs=69.0
Q ss_pred CCCEEEEEeccCCCCCCceEEeccchhHHHhhhcc---ccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCC
Q 010114 146 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 222 (518)
Q Consensus 146 ~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~ 222 (518)
++.++++.. .+ +..+|...+...+.... ...++.++|++...++-+.. ....+++++..|+..+.+++.
T Consensus 16 p~~~a~~~~---~~----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~~ 87 (504)
T 1t5h_X 16 PDHCALAVP---AR----GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD-VVIAILALHRLGAVPALLNPR 87 (504)
T ss_dssp TTSEEEEET---TT----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH-HHHHHHHHHHHTCEEEEECTT
T ss_pred CCceEEEEc---CC----CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH-HHHHHHHHHHhCcEEEecCCc
Confidence 466766542 11 24578777665544333 34578899999988886543 234488999999999999988
Q ss_pred CChhHHHHHHHHcCccEEEe--chHHHHHH
Q 010114 223 PLERSFGKFVQDAGVTVLGT--VPSLVKAW 250 (518)
Q Consensus 223 ~~~~~~~~~i~~~~~t~l~~--~P~~~~~l 250 (518)
...+++...+++.++..++. .+.....+
T Consensus 88 ~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 88 LKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp SCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred cChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 88899999999999999988 66555544
No 49
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=65.71 E-value=36 Score=33.12 Aligned_cols=107 Identities=13% Similarity=0.007 Sum_probs=72.9
Q ss_pred CCCCEEEEEeccCCCCCCceEEeccchhHHHhhhcccc---ccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecC
Q 010114 145 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 221 (518)
Q Consensus 145 ~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~---~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~ 221 (518)
.++.++++.........-....+|...+...+...... .+. ++|++...++-+.. ....+++++..|+..+.+.+
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e-~~~~~lA~~~~G~v~vpl~~ 114 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLE-YVVAFLGALQAGRIAVPLSV 114 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEECS
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHH-HHHHHHHHHHhCcEEEeeCC
Confidence 35778776654221111123567887776655444333 354 88999888876533 33448899999999998876
Q ss_pred ---CCChhHHHHHHHHcCccEEEechHHHHHHHhc
Q 010114 222 ---SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT 253 (518)
Q Consensus 222 ---~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 253 (518)
....+++...+++.++..++..+.....+...
T Consensus 115 ~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 115 PQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp CCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred CCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 44567899999999999999998887776554
No 50
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=64.40 E-value=36 Score=34.20 Aligned_cols=102 Identities=8% Similarity=-0.052 Sum_probs=72.4
Q ss_pred CCCCEEEEEeccCCCCCCceEEeccchhHHHhhhcc---ccc-cCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEec
Q 010114 145 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHI-DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 220 (518)
Q Consensus 145 ~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~---~~~-~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~ 220 (518)
.++.++++.... .| ....+|...+...+.... ... ++.++|++...++-+.. ....+++++..|+..+.++
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Ga~~vpl~ 130 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPE-WWLVILGCIRAGLIFMPGT 130 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHH-HHHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHH-HHHHHHHHHHcCeEEEecC
Confidence 346777665421 12 134577777655544333 334 78899999988886543 2344889999999999998
Q ss_pred CCCChhHHHHHHHHcCccEEEechHHHHHHH
Q 010114 221 GSPLERSFGKFVQDAGVTVLGTVPSLVKAWR 251 (518)
Q Consensus 221 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~ 251 (518)
+....+++...+++.++..++..+.....+.
T Consensus 131 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 161 (570)
T 3c5e_A 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEVD 161 (570)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEETTTHHHHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEechHHHHHHH
Confidence 8888899999999999999998877665553
No 51
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=63.93 E-value=29 Score=32.39 Aligned_cols=69 Identities=17% Similarity=0.246 Sum_probs=54.7
Q ss_pred HHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 11 MLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 11 ~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+.+.....+. +++|.+..+....+-.-..+-++|.++|..+..+-|...+..-...++.+++++++++.
T Consensus 72 ~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~ 141 (344)
T 3vc3_A 72 AMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDP 141 (344)
T ss_dssp HHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC
Confidence 4455555555 88888766777778888888899999999887777777777778899999999999865
No 52
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=63.47 E-value=22 Score=35.52 Aligned_cols=100 Identities=15% Similarity=-0.010 Sum_probs=71.8
Q ss_pred CCCEEEEEeccCCCCCCceEEeccchhHHHhhhc---cccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCC
Q 010114 146 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 222 (518)
Q Consensus 146 ~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~---~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~ 222 (518)
++.++++....+ ..-.+|...+...+... ....++.++|++...++-+.. ....+++++..|+..+.+++.
T Consensus 32 p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~~ 105 (541)
T 1v25_A 32 GRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFR-HLEAYFAVPGMGAVLHTANPR 105 (541)
T ss_dssp TTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECCTT
T ss_pred CCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHhcCcEEEecCcc
Confidence 366666543211 23457777665554433 334578999999988886533 334488999999999999988
Q ss_pred CChhHHHHHHHHcCccEEEechHHHHHHH
Q 010114 223 PLERSFGKFVQDAGVTVLGTVPSLVKAWR 251 (518)
Q Consensus 223 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~ 251 (518)
...+++...+++.++..++..+.....+.
T Consensus 106 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 134 (541)
T 1v25_A 106 LSPKEIAYILNHAEDKVLLFDPNLLPLVE 134 (541)
T ss_dssp SCHHHHHHHHHHHTCSEEEECGGGHHHHH
T ss_pred cCHHHHHHHHHhCCCcEEEEChhHHHHHH
Confidence 88899999999999999999887665543
No 53
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=63.38 E-value=17 Score=36.44 Aligned_cols=85 Identities=9% Similarity=-0.088 Sum_probs=66.0
Q ss_pred EeccchhHHHhhhcc---ccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccEEEe
Q 010114 166 PWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGT 242 (518)
Q Consensus 166 ~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~ 242 (518)
.+|...+...+.... ...++.++|++...++-+.. ....+++++..|+..+.+++....+++...+++.++..++.
T Consensus 50 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~ 128 (550)
T 3rix_A 50 NITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQ-FFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFV 128 (550)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTT-THHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCccc-HHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEE
Confidence 577777655544333 34578999999988886533 33458899999999999998888899999999999999999
Q ss_pred chHHHHHHH
Q 010114 243 VPSLVKAWR 251 (518)
Q Consensus 243 ~P~~~~~l~ 251 (518)
.+.....+.
T Consensus 129 ~~~~~~~~~ 137 (550)
T 3rix_A 129 SKKGLQKIL 137 (550)
T ss_dssp CGGGHHHHH
T ss_pred cHHHHHHHH
Confidence 887766554
No 54
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=63.36 E-value=19 Score=33.75 Aligned_cols=79 Identities=11% Similarity=0.057 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCC--HHHHHHHHHHHHcCceeEecccchhHH-----------------
Q 010114 2 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMT--VRAVIIYLAIILAGYVVVSIADSFAAR----------------- 61 (518)
Q Consensus 2 Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~--~e~~v~~lA~~~~G~~~v~l~~~~~~~----------------- 61 (518)
|.+.+...+..+++.+... +.++|++..+++-+ .--+...++++..|+..++.. ..+.
T Consensus 112 t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~~~~ 189 (369)
T 3hgu_A 112 YDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATVRKY 189 (369)
T ss_dssp CHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhhHHH
Confidence 4555655555555555666 89999999998862 222334455588899655543 2222
Q ss_pred ------HHHHHHHhcCceEEEechhhh
Q 010114 62 ------EIATRLRVSKAKGIFTQDFIL 82 (518)
Q Consensus 62 ------~i~~~l~~~~~~~ii~~~~~~ 82 (518)
.+...+++.++.+++..+...
T Consensus 190 ~~~~~~~~~~~i~~~~~t~l~~~Ps~~ 216 (369)
T 3hgu_A 190 THHLVDQVQNTLMNQDIRFLVTTPPVL 216 (369)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEeCHHHH
Confidence 566689999999999887643
No 55
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=59.72 E-value=30 Score=35.64 Aligned_cols=96 Identities=13% Similarity=0.046 Sum_probs=69.2
Q ss_pred CCCEEEEEeccCCCCCCceEEeccchhHHHhh---hccc-cccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecC
Q 010114 146 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWA-HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 221 (518)
Q Consensus 146 ~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~---~~~~-~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~ 221 (518)
++.++++... ..+|. ...+|...+...+. .... ..++.++|++...+|.... ....+++++..|+..+.+.+
T Consensus 96 pd~~Al~~~~-~~~~~--~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e-~v~a~lA~~~~Gav~vpl~~ 171 (663)
T 1ry2_A 96 PNKKAIIFEG-DEPGQ--GYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPE-AIITLLAISRIGAIHSVVFA 171 (663)
T ss_dssp TTSEEEEEEC-SSTTC--CEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHH-HHHHHHHHHHTTCEEEECCT
T ss_pred CCceEEEEEc-CCCCc--eEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH-HHHHHHHHHHcCCEEEeeCC
Confidence 4777766542 22222 24577766655443 3333 5678899999999987543 33448899999999999998
Q ss_pred CCChhHHHHHHHHcCccEEEechH
Q 010114 222 SPLERSFGKFVQDAGVTVLGTVPS 245 (518)
Q Consensus 222 ~~~~~~~~~~i~~~~~t~l~~~P~ 245 (518)
......+...+++.++.+++....
T Consensus 172 ~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 172 GFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp TSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCHHHHHHHHHhcCCeEEEEccc
Confidence 888899999999999999988654
No 56
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=59.42 E-value=31 Score=35.40 Aligned_cols=95 Identities=15% Similarity=0.034 Sum_probs=68.6
Q ss_pred CCCEEEEEeccCCCCCCceEEeccchhHHHhhhcc---ccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCC
Q 010114 146 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 222 (518)
Q Consensus 146 ~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~ 222 (518)
++.++++.. +..+| ..-.+|...+...+.... ...++.++|++...+|.+.. ....+++++..|+..+.+.+.
T Consensus 90 pd~~Al~~~-~~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e-~vva~lA~~~~Gav~vpl~~~ 165 (652)
T 1pg4_A 90 GDRTAIIWE-GDDTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPE-AAVAMLACARIGAVHSVIFGG 165 (652)
T ss_dssp TTSEEEEEE-CSSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECCTT
T ss_pred CCceEEEEE-cCCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHcCcEEEecCCC
Confidence 477776643 22222 234577777655544333 34578999999999887643 234488999999999999988
Q ss_pred CChhHHHHHHHHcCccEEEech
Q 010114 223 PLERSFGKFVQDAGVTVLGTVP 244 (518)
Q Consensus 223 ~~~~~~~~~i~~~~~t~l~~~P 244 (518)
...+.+...+++.++..++...
T Consensus 166 ~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 166 FSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp SCHHHHHHHHHHHTCSEEEEES
T ss_pred CCHHHHHHHHHhcCCCEEEEcC
Confidence 8889999999999999988754
No 57
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=59.21 E-value=25 Score=35.02 Aligned_cols=84 Identities=7% Similarity=-0.072 Sum_probs=63.9
Q ss_pred EeccchhHHHhhhcc---ccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccEEEe
Q 010114 166 PWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGT 242 (518)
Q Consensus 166 ~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~ 242 (518)
.+|...+...+.... ...++.++|++...++-+.. ....+++++..|+..+.+++.....++...+++.++..++.
T Consensus 48 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~ 126 (529)
T 2v7b_A 48 STTYGELEERARRFASALRTLGVHPEERILLVMLDTVA-LPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIA 126 (529)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTH-HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEE
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEe
Confidence 467766655544333 34578899999988886543 23448899999999999988888899999999999999998
Q ss_pred chHHHHHH
Q 010114 243 VPSLVKAW 250 (518)
Q Consensus 243 ~P~~~~~l 250 (518)
.+.....+
T Consensus 127 ~~~~~~~~ 134 (529)
T 2v7b_A 127 SGALVQNV 134 (529)
T ss_dssp EGGGHHHH
T ss_pred chhhhhHH
Confidence 87765444
No 58
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=59.20 E-value=34 Score=34.57 Aligned_cols=96 Identities=10% Similarity=0.036 Sum_probs=69.9
Q ss_pred CCCCEEEEEeccCCCCCCceEEeccchhHHHhhhc---cccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecC
Q 010114 145 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 221 (518)
Q Consensus 145 ~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~---~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~ 221 (518)
.++.++++.... .| ....+|...+....... ....++.++|++...++-+.. ....+++++..|+..+.+.+
T Consensus 69 ~pd~~Al~~~~~--~g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e-~~~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDD--YG--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYD-FWYCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEES--SS--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTH-HHHHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcC--CC--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH-HHHHHHHHHhCCEEEEeCCc
Confidence 457888776532 12 23457776665544433 334588999999988886543 23448899999999999988
Q ss_pred CCChhHHHHHHHHcCccEEEechH
Q 010114 222 SPLERSFGKFVQDAGVTVLGTVPS 245 (518)
Q Consensus 222 ~~~~~~~~~~i~~~~~t~l~~~P~ 245 (518)
....+++...+++.++..+++.+.
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~~ 167 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIAE 167 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEESS
T ss_pred cCCHHHHHHHHHhcCCCEEEEecc
Confidence 888899999999999999987553
No 59
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=58.30 E-value=41 Score=31.11 Aligned_cols=67 Identities=19% Similarity=0.148 Sum_probs=49.5
Q ss_pred HHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 13 VANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 13 la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+.....+- +++|+.|.+....+-.-..+.++|.++|..++.+-|...+......++..++++++++.
T Consensus 59 i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 126 (334)
T 3tbh_A 59 YDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPA 126 (334)
T ss_dssp HHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC
Confidence 33333343 68888865555667777778888888898877666665566667889999999999975
No 60
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=57.87 E-value=25 Score=35.14 Aligned_cols=84 Identities=7% Similarity=-0.116 Sum_probs=64.4
Q ss_pred EeccchhHHHhhhcc---ccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccEEEe
Q 010114 166 PWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGT 242 (518)
Q Consensus 166 ~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~ 242 (518)
.+|...+...+.... ...++.++|++...++-+.. ....+++++..|+..+.+++....+++...+++.++..++.
T Consensus 52 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e-~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~ 130 (548)
T 2d1s_A 52 DYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEE-FFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFS 130 (548)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTT-THHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEE
T ss_pred EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh-HHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEE
Confidence 477776655544333 34578999999988886533 23448899999999999998888899999999999999998
Q ss_pred chHHHHHH
Q 010114 243 VPSLVKAW 250 (518)
Q Consensus 243 ~P~~~~~l 250 (518)
.+.....+
T Consensus 131 ~~~~~~~~ 138 (548)
T 2d1s_A 131 SKKGLDKV 138 (548)
T ss_dssp CTTTHHHH
T ss_pred cHHHHHHH
Confidence 87665544
No 61
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=56.10 E-value=32 Score=34.04 Aligned_cols=97 Identities=8% Similarity=-0.065 Sum_probs=70.4
Q ss_pred CCCEEEEEeccCCCCCCceEEeccchhHHHhhhcc---ccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCC
Q 010114 146 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 222 (518)
Q Consensus 146 ~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~ 222 (518)
++.++++.. | +...+|...+...+.... ...++.++|++...++-+.. ....+++++..|+..+.+++.
T Consensus 30 p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~~ 101 (517)
T 3r44_A 30 PRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVE-FCCLFYGAAKLGAVAVPINTR 101 (517)
T ss_dssp TTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECCTT
T ss_pred CCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHH-HHHHHHHHHHhCcEEEecCcc
Confidence 467776543 1 124577777655544333 34578999999988886532 334488999999999999988
Q ss_pred CChhHHHHHHHHcCccEEEechHHHHHH
Q 010114 223 PLERSFGKFVQDAGVTVLGTVPSLVKAW 250 (518)
Q Consensus 223 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l 250 (518)
...+++...+++.++..++..+.....+
T Consensus 102 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 129 (517)
T 3r44_A 102 LAAPEVSFILSDSGSKVVIYGAPSAPVI 129 (517)
T ss_dssp SCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred cCHHHHHHHHHhcCceEEEECCchHHHH
Confidence 8889999999999999999876654443
No 62
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=54.26 E-value=33 Score=33.84 Aligned_cols=80 Identities=15% Similarity=0.095 Sum_probs=61.9
Q ss_pred EeccchhHHHhhhcc---ccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccEEEe
Q 010114 166 PWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGT 242 (518)
Q Consensus 166 ~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~ 242 (518)
.+|...+...+.... ...++.++|++...++-+.. ....+++++..|+..+.+++.....++...+++.++..++.
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVE-ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 467766655544333 34578999999988886532 33448899999999999998888899999999999999998
Q ss_pred chHH
Q 010114 243 VPSL 246 (518)
Q Consensus 243 ~P~~ 246 (518)
.+..
T Consensus 107 ~~~~ 110 (503)
T 4fuq_A 107 DPSK 110 (503)
T ss_dssp CGGG
T ss_pred Cchh
Confidence 7654
No 63
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=53.08 E-value=52 Score=28.17 Aligned_cols=90 Identities=10% Similarity=-0.113 Sum_probs=54.7
Q ss_pred EEEeecCc-hhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHcCccEEEe--ch----HH--HHHHHhcccCCCC
Q 010114 190 VYCWPTNL-GWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGT--VP----SL--VKAWRNTNCLEGL 259 (518)
Q Consensus 190 ~~l~~~pl-~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~--~P----~~--~~~l~~~~~~~~~ 259 (518)
+++.+.+- .|..|... ...--..|..++.......++++.+.+.++++.++.. +- .+ +..+.+..+..+.
T Consensus 95 vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~ 174 (215)
T 3ezx_A 95 AITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKL 174 (215)
T ss_dssp EEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTC
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcCC
Confidence 33434333 38888755 4444557888888877788899999999999997766 22 11 2223332222221
Q ss_pred CccchhhhhccCCCCCchhhhH
Q 010114 260 DWTKIRSFASTGETSNVDDDLW 281 (518)
Q Consensus 260 ~l~~lr~i~~~Ge~l~~~~~~~ 281 (518)
. ..++ ++.||.+++++..+.
T Consensus 175 ~-~~v~-v~vGG~~~~~~~a~~ 194 (215)
T 3ezx_A 175 R-DSVK-CMFGGAPVSDKWIEE 194 (215)
T ss_dssp G-GGSE-EEEESSSCCHHHHHH
T ss_pred C-CCCE-EEEECCCCCHHHHHH
Confidence 1 2344 678888888764443
No 64
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=52.84 E-value=41 Score=36.53 Aligned_cols=96 Identities=13% Similarity=-0.031 Sum_probs=70.2
Q ss_pred CCCCEEEEEeccCCCCCCceEEeccchhHHHhhhc---cccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecC
Q 010114 145 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 221 (518)
Q Consensus 145 ~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~---~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~ 221 (518)
.++.++++... +| -.+|...+....... ....++.++|++...++-+. -....+++++..|+..+.+++
T Consensus 74 ~pd~~Al~~~~---~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~-e~~v~~lA~~~~Ga~~vpl~~ 145 (979)
T 3tsy_A 74 FATKPCLINGP---TG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCP-EFVLSFLAASFRGATATAANP 145 (979)
T ss_dssp TTTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCH-HHHHHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEECC---CC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCH-HHHHHHHHHHHcCCEEEeeCC
Confidence 45778766422 22 346776665544433 33457899999998888653 233448899999999999998
Q ss_pred CCChhHHHHHHHHcCccEEEechHHHH
Q 010114 222 SPLERSFGKFVQDAGVTVLGTVPSLVK 248 (518)
Q Consensus 222 ~~~~~~~~~~i~~~~~t~l~~~P~~~~ 248 (518)
...++++...+++.++..++..+....
T Consensus 146 ~~~~~~l~~~l~~~~~~~vi~~~~~~~ 172 (979)
T 3tsy_A 146 FFTPAEIAKQAKASNTKLIITEARYVD 172 (979)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECSTTTT
T ss_pred CCCHHHHHHHHHHcCCeEEEEChHHHH
Confidence 888999999999999999998776543
No 65
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=52.83 E-value=82 Score=31.57 Aligned_cols=101 Identities=9% Similarity=-0.027 Sum_probs=71.2
Q ss_pred CCCCEEEEEeccCCCCCCceEEeccchhHHHhhhcc---ccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecC
Q 010114 145 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 221 (518)
Q Consensus 145 ~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~ 221 (518)
.++.++++....+ ..-.+|...+...+.... ...++.++|++...++-+.. ....+++++..|+..+.+.+
T Consensus 24 ~p~~~a~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~ 97 (590)
T 3kxw_A 24 SPNKKSCTFLNKE-----LEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLP-LIQAFLGCLYAGCIAVPIYP 97 (590)
T ss_dssp CTTSEEEEEEETT-----EEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEECC
T ss_pred CCCCeEEEEEcCC-----eeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchh-HHHHHHHHHHhCcEEEEecC
Confidence 3477776654411 234577777765544333 34578899999988886543 33448899999999998876
Q ss_pred CC---ChhHHHHHHHHcCccEEEechHHHHHHH
Q 010114 222 SP---LERSFGKFVQDAGVTVLGTVPSLVKAWR 251 (518)
Q Consensus 222 ~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~ 251 (518)
.. ....+...++..++..++..+.....+.
T Consensus 98 ~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 98 PAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp CCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred CCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 54 2467788899999999999888777654
No 66
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=52.41 E-value=42 Score=33.71 Aligned_cols=84 Identities=8% Similarity=-0.102 Sum_probs=64.3
Q ss_pred EeccchhHHHhhhcc---ccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccEEEe
Q 010114 166 PWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGT 242 (518)
Q Consensus 166 ~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~ 242 (518)
.+|...+...+.... ...++.++|++...++-+.. ....+++++..|+..+.+++....+++...+++.++..++.
T Consensus 64 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~ 142 (563)
T 1amu_A 64 QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSID-LFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLT 142 (563)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEE
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEE
Confidence 477776655444333 34578899999988886533 33448899999999999998888899999999999999999
Q ss_pred chHHHHHH
Q 010114 243 VPSLVKAW 250 (518)
Q Consensus 243 ~P~~~~~l 250 (518)
.+.....+
T Consensus 143 ~~~~~~~~ 150 (563)
T 1amu_A 143 QKHLVHLI 150 (563)
T ss_dssp CGGGHHHH
T ss_pred cCchhhhh
Confidence 88665544
No 67
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=50.61 E-value=37 Score=33.40 Aligned_cols=79 Identities=5% Similarity=-0.031 Sum_probs=61.5
Q ss_pred EeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccEEEechH
Q 010114 166 PWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPS 245 (518)
Q Consensus 166 ~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~ 245 (518)
.+|...+...+......+.-.++|++...++-+.. ....+++++..|+..+.+++....+++...+++.++..++....
T Consensus 26 ~~Ty~eL~~~~~~lA~~L~~~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~ 104 (501)
T 3ipl_A 26 SYTYQNLYCEASLLAKRLKAYQQSRVGLYIDNSIQ-SIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLP 104 (501)
T ss_dssp EEEHHHHHHHHHHHHHHHHTTCCSEEEEECCSSHH-HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSC
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCHH-HHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccc
Confidence 57887777766655555544489999988886532 33458899999999999998888899999999999999887643
No 68
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=45.79 E-value=50 Score=33.15 Aligned_cols=92 Identities=16% Similarity=0.076 Sum_probs=67.8
Q ss_pred CCCCEEEEEeccCCCCCCceEEeccchhHHHhhhcc---ccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecC
Q 010114 145 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 221 (518)
Q Consensus 145 ~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~ 221 (518)
.++.++++. . .-.+|...+...+.... ...++.++|++...++-+.. ....+++++..|+..+.+++
T Consensus 88 ~pd~~A~~~-~--------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl~~ 157 (570)
T 4gr5_A 88 APDAVALLH-E--------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFD-MVVALLAVLKAGGGYTMLDP 157 (570)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEC-C--------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHHCCEEEEcCC
Confidence 457777654 1 12477766655544333 34578999999988886543 23448899999999999998
Q ss_pred CCChhHHHHHHHHcCccEEEechHH
Q 010114 222 SPLERSFGKFVQDAGVTVLGTVPSL 246 (518)
Q Consensus 222 ~~~~~~~~~~i~~~~~t~l~~~P~~ 246 (518)
....+++...+++.++..++.....
T Consensus 158 ~~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 158 QFPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred CChHHHHHHHHHhcCCCEEEecchh
Confidence 8888999999999999999887654
No 69
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=42.05 E-value=53 Score=32.72 Aligned_cols=91 Identities=13% Similarity=0.009 Sum_probs=66.3
Q ss_pred CCCCEEEEEeccCCCCCCceEEeccchhHHHhhhcc---ccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecC
Q 010114 145 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 221 (518)
Q Consensus 145 ~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~ 221 (518)
.++.++++. + .-.+|...+...+.... ...++.++|++...++-+.. ....+++++..|+..+.+.+
T Consensus 43 ~p~~~Al~~---~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~Gav~vpl~~ 112 (544)
T 3o83_A 43 HPHSLAIIC---G------ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAE-FYIVFFALLKAGVVVLNALY 112 (544)
T ss_dssp CTTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHH-HHHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEc---C------CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHH-HHHHHHHHHHhCcEEecCCC
Confidence 357777653 1 23477776655544333 34578999999988876532 33448899999999998888
Q ss_pred CCChhHHHHHHHHcCccEEEechH
Q 010114 222 SPLERSFGKFVQDAGVTVLGTVPS 245 (518)
Q Consensus 222 ~~~~~~~~~~i~~~~~t~l~~~P~ 245 (518)
.....++...+++.++..++..+.
T Consensus 113 ~~~~~~l~~~l~~~~~~~li~~~~ 136 (544)
T 3o83_A 113 SHRQYELNAFIKQIQPKLLIGSRQ 136 (544)
T ss_dssp TCCHHHHHHHHHHHCCSEEEEETT
T ss_pred CCCHHHHHHHHHhcCeeEEEEccc
Confidence 888899999999999999987653
No 70
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=40.97 E-value=55 Score=32.51 Aligned_cols=79 Identities=11% Similarity=-0.064 Sum_probs=60.2
Q ss_pred EEeccchhHHHhhhcc---ccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccEEE
Q 010114 165 IPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLG 241 (518)
Q Consensus 165 v~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~ 241 (518)
-.+|...+...+.... ...++.++|++...++-+.. ....+++++..|+..+.+.+....+++...+++.++..++
T Consensus 49 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi 127 (539)
T 1mdb_A 49 THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKE-FFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYI 127 (539)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHH-HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEE
T ss_pred CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEE
Confidence 3577776655544333 34578999999988886543 2344889999999999888888889999999999999988
Q ss_pred ech
Q 010114 242 TVP 244 (518)
Q Consensus 242 ~~P 244 (518)
..+
T Consensus 128 ~~~ 130 (539)
T 1mdb_A 128 IPD 130 (539)
T ss_dssp EES
T ss_pred ecc
Confidence 765
No 71
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=40.60 E-value=51 Score=32.52 Aligned_cols=78 Identities=6% Similarity=-0.139 Sum_probs=59.3
Q ss_pred EeccchhHHHhhhcc---ccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccEEEe
Q 010114 166 PWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGT 242 (518)
Q Consensus 166 ~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~ 242 (518)
.+|...+...+.... ...++.++|++...++-+.. .+..+++++..|+..+.+++....+++...+++.++..++.
T Consensus 29 ~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~-~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~ 107 (521)
T 3l8c_A 29 RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYD-MLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIA 107 (521)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHH-HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEE
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEe
Confidence 367766655544333 34578899998888776532 33448899999999999988888899999999999999887
Q ss_pred ch
Q 010114 243 VP 244 (518)
Q Consensus 243 ~P 244 (518)
..
T Consensus 108 ~~ 109 (521)
T 3l8c_A 108 IE 109 (521)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 72
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=40.42 E-value=1.1e+02 Score=29.32 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=49.0
Q ss_pred HHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 13 VANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 13 la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+.....+- +++|....+....+-.-..+-+||.++|..++.+-|...+......++.+++++++++.
T Consensus 162 i~~A~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 162 VTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHHHHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 33333334 77886555555667777777888999999877766666666778889999999999974
No 73
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=39.24 E-value=1.3e+02 Score=27.53 Aligned_cols=67 Identities=13% Similarity=0.138 Sum_probs=46.6
Q ss_pred HHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 13 VANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 13 la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+.....+- +++|+...+....+-.-..+.++|.++|..++.+-|...+..-...++.+++++++++.
T Consensus 54 l~~a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 121 (322)
T 1z7w_A 54 ISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDP 121 (322)
T ss_dssp HHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHHHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Confidence 33333344 67775334445567666777788889999877766655556667889999999999875
No 74
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=37.85 E-value=99 Score=30.81 Aligned_cols=85 Identities=9% Similarity=-0.059 Sum_probs=62.8
Q ss_pred EEeccchhHHHhhhcc---ccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCC-------hhHHHHHHHH
Q 010114 165 IPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL-------ERSFGKFVQD 234 (518)
Q Consensus 165 v~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~-------~~~~~~~i~~ 234 (518)
-.+|...+...+.... ...++.++|++...++-+.. ....+++++..|+..+.+++... ...+...+++
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~ 126 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSE-FVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLAS 126 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHh
Confidence 4577777765554433 34578899999988886543 33448899999999998876555 5778888999
Q ss_pred cCccEEEechHHHHHH
Q 010114 235 AGVTVLGTVPSLVKAW 250 (518)
Q Consensus 235 ~~~t~l~~~P~~~~~l 250 (518)
.++..++........+
T Consensus 127 ~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 127 CQPAAIITGDEWLPLV 142 (576)
T ss_dssp HCCSEEEECGGGHHHH
T ss_pred cCCCEEEecHHHHHHH
Confidence 9999999887765554
No 75
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=37.38 E-value=87 Score=30.75 Aligned_cols=61 Identities=11% Similarity=0.115 Sum_probs=48.2
Q ss_pred cCCCCEEEEEcCCCHHH-HHHHHHHHHcCceeEecccc--hhHHHHHHHHHhcCceEEEechhh
Q 010114 21 FSKGDAIAIDMPMTVRA-VIIYLAIILAGYVVVSIADS--FAAREIATRLRVSKAKGIFTQDFI 81 (518)
Q Consensus 21 v~~g~~V~i~~~~~~e~-~v~~lA~~~~G~~~v~l~~~--~~~~~i~~~l~~~~~~~ii~~~~~ 81 (518)
+.++|++...+|-+..+ +..+++++..|+..+.++.. ..+..+...+++.++.+++..+..
T Consensus 181 ~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~ 244 (511)
T 3e7w_A 181 VSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSF 244 (511)
T ss_dssp TTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHH
T ss_pred CCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHH
Confidence 78999999988866433 34578888899998877654 467788999999999999988754
No 76
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=36.45 E-value=1.6e+02 Score=26.64 Aligned_cols=58 Identities=17% Similarity=0.085 Sum_probs=42.7
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 21 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 21 v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+++|+.|.. ...+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++.
T Consensus 64 ~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 121 (313)
T 2q3b_A 64 IKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPG 121 (313)
T ss_dssp CCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred CCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCC
Confidence 567776655 5556666666777788999877766655556667788999999999875
No 77
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=36.17 E-value=1.4e+02 Score=27.24 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=47.1
Q ss_pred HHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 13 VANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 13 la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+...+.+. +++|+.|... ..+-.-..+-++|.++|..++.+-|...+......++..++++++++.
T Consensus 61 l~~a~~~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 127 (325)
T 3dwg_A 61 IEQAEADGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAA 127 (325)
T ss_dssp HHHHHHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECS
T ss_pred HHHHHHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECC
Confidence 33344444 6777877665 456666667777888898877666665666667888999999999975
No 78
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=35.48 E-value=2.2e+02 Score=25.86 Aligned_cols=70 Identities=10% Similarity=0.050 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhc--cCCCCEEEEEcCCCHHHHHHHHHHHHc----C---ceeEecccchh------HHHHHHHHHhcCce
Q 010114 9 QVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILA----G---YVVVSIADSFA------AREIATRLRVSKAK 73 (518)
Q Consensus 9 ~~~~la~~L~~~--v~~g~~V~i~~~~~~e~~v~~lA~~~~----G---~~~v~l~~~~~------~~~i~~~l~~~~~~ 73 (518)
-..++.+.+.+. +.+|++|++.++-++|..+++..+.+. | ..++.++..+. .+....+.+..+.+
T Consensus 7 ~~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~~s~~~~~~v~~~a~~lgi~ 86 (317)
T 1wy5_A 7 VIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERNMK 86 (317)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCcccHHHHHHHHHHHHHcCCc
Confidence 345666677765 899999999999999999988877764 4 44566666542 22356667777887
Q ss_pred EEEec
Q 010114 74 GIFTQ 78 (518)
Q Consensus 74 ~ii~~ 78 (518)
+.+.+
T Consensus 87 ~~v~~ 91 (317)
T 1wy5_A 87 IFVGK 91 (317)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77665
No 79
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=34.80 E-value=69 Score=31.49 Aligned_cols=77 Identities=6% Similarity=-0.134 Sum_probs=58.2
Q ss_pred EeccchhHHHhhhcc---ccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccEEEe
Q 010114 166 PWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGT 242 (518)
Q Consensus 166 ~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~ 242 (518)
.+|...+...+.... ...++.++|++...++.+.. ....+++++..|+..+.+++....+++...+++.++..++.
T Consensus 26 ~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e-~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~ 104 (512)
T 3fce_A 26 KITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPE-MIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLS 104 (512)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHH-HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEE
T ss_pred eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEe
Confidence 467766655544333 33578889998887776432 33458899999999999988888899999999999998876
Q ss_pred c
Q 010114 243 V 243 (518)
Q Consensus 243 ~ 243 (518)
.
T Consensus 105 ~ 105 (512)
T 3fce_A 105 A 105 (512)
T ss_dssp S
T ss_pred c
Confidence 5
No 80
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=34.02 E-value=1.4e+02 Score=27.50 Aligned_cols=59 Identities=24% Similarity=0.232 Sum_probs=37.5
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHH-HHHcCceeEeccc------------chhHHHHHHHHHhcCceEEEech
Q 010114 21 FSKGDAIAIDMPMTV------RAVIIYLA-IILAGYVVVSIAD------------SFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 21 v~~g~~V~i~~~~~~------e~~v~~lA-~~~~G~~~v~l~~------------~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+++||+|+++.|.+. +-+-.-.+ +-..|..++.-.. ...++++..++.+-..+.|++..
T Consensus 9 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 9 LKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 799999999999752 22222122 2345776654322 12355778888888888888865
No 81
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=33.42 E-value=93 Score=31.50 Aligned_cols=90 Identities=11% Similarity=-0.022 Sum_probs=65.3
Q ss_pred CCCEEEEEeccCCCCCCceEEeccchhHHHhhhcc---ccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCC
Q 010114 146 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 222 (518)
Q Consensus 146 ~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~ 222 (518)
++.++.+. | .-.+|...+........ ...++.++|++...++-+.. ....+++.+..|+..+.+++.
T Consensus 39 pd~~Av~~---~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~-~vva~lA~l~aG~~~vpl~~~ 108 (617)
T 3rg2_A 39 SDSIAVID---G------ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAE-LYITFFALLKLGVAPVLALFS 108 (617)
T ss_dssp CCSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEEECTT
T ss_pred CCCeEEec---C------CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHH-HHHHHHHHHhcCeEEccCCcc
Confidence 47777653 1 13477766655544333 34578899999988886532 234488999999999988888
Q ss_pred CChhHHHHHHHHcCccEEEechH
Q 010114 223 PLERSFGKFVQDAGVTVLGTVPS 245 (518)
Q Consensus 223 ~~~~~~~~~i~~~~~t~l~~~P~ 245 (518)
.....+...+++.++..+.....
T Consensus 109 ~~~~~l~~~l~~~~~~~vl~~~~ 131 (617)
T 3rg2_A 109 HQRSELNAYASQIEPALLIADRQ 131 (617)
T ss_dssp CCHHHHHHHHHHHCCSEEEEETT
T ss_pred ccHHHHHHHHhhcCceEEEeccc
Confidence 88889999999999999887653
No 82
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=33.02 E-value=97 Score=28.50 Aligned_cols=60 Identities=13% Similarity=0.041 Sum_probs=42.1
Q ss_pred Hhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 17 LDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 17 L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+... +++|++|+++..-+.-...+.+|....|+..+.++.+ ++-..+++..++..+|-..
T Consensus 156 l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~---~~r~~~~~~~Ga~~~i~~~ 216 (348)
T 4eez_A 156 IKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN---QDKLNLAKKIGADVTINSG 216 (348)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC---HHHHHHHHHTTCSEEEEC-
T ss_pred ecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc---HHHhhhhhhcCCeEEEeCC
Confidence 4444 9999999999987777777777766667776666544 2334567788888887543
No 83
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=32.64 E-value=2.1e+02 Score=26.39 Aligned_cols=58 Identities=19% Similarity=0.115 Sum_probs=42.2
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 21 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 21 v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+++|+.|..... +-.-..+.++|.++|..++.+-|...+..-...++..++++++++.
T Consensus 75 ~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 132 (343)
T 2pqm_A 75 LKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEG 132 (343)
T ss_dssp SCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC
Confidence 677776666544 5555556677778998777666655556667789999999999875
No 84
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=32.04 E-value=2.3e+02 Score=25.47 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=42.9
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 21 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 21 v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+++|+.|.... .+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++.
T Consensus 58 ~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 115 (303)
T 2v03_A 58 IKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTK 115 (303)
T ss_dssp CCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred CCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 66777666655 45555566677788999877766665556667789999999999875
No 85
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=32.02 E-value=1.5e+02 Score=28.37 Aligned_cols=55 Identities=11% Similarity=0.097 Sum_probs=22.6
Q ss_pred cCCCCEEEEEcCCCHHHHHHHH-HHHHcCceeEecccchhHHHHHHHHHhcCceEEEe
Q 010114 21 FSKGDAIAIDMPMTVRAVIIYL-AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT 77 (518)
Q Consensus 21 v~~g~~V~i~~~~~~e~~v~~l-A~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~ 77 (518)
+++||.|.+.-+.-....-.+- .+.+.|+.++.++.. ..+.++..++. ++++|+.
T Consensus 118 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-d~~~l~~ai~~-~t~~v~~ 173 (430)
T 3ri6_A 118 ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-DSLAVEHACDE-TTKLLFL 173 (430)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHCCT-TEEEEEE
T ss_pred hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhhCC-CCeEEEE
Confidence 4555555444443333222221 333445554444433 33444444432 3444443
No 86
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=31.70 E-value=1.7e+02 Score=26.40 Aligned_cols=58 Identities=19% Similarity=0.178 Sum_probs=41.2
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 21 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 21 v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+++|+.|.. ...+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++.
T Consensus 62 ~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 119 (308)
T 2egu_A 62 LKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPG 119 (308)
T ss_dssp CCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECG
T ss_pred CCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 567766655 4445555556777788998777665555555667788999999999875
No 87
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=31.37 E-value=1.6e+02 Score=27.15 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=36.8
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHHHH-HcCceeEeccc------------chhHHHHHHHHHhcCceEEEech
Q 010114 21 FSKGDAIAIDMPMTV------RAVIIYLAII-LAGYVVVSIAD------------SFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 21 v~~g~~V~i~~~~~~------e~~v~~lA~~-~~G~~~v~l~~------------~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+++||+|+++.|.+. +-+-.-.+.+ ..|..++.-.. ....+++..++.+-.++.|++..
T Consensus 10 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 10 LKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 899999999999883 1222222222 35776664211 11245677777777888888764
No 88
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=31.26 E-value=1.5e+02 Score=27.51 Aligned_cols=55 Identities=20% Similarity=0.167 Sum_probs=37.6
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccc-------hhHHHHHHHHHhcCceEEEec
Q 010114 21 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS-------FAAREIATRLRVSKAKGIFTQ 78 (518)
Q Consensus 21 v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~-------~~~~~i~~~l~~~~~~~ii~~ 78 (518)
+++||.|.+..+....+ ..++...|+.++.++.. ...+.+...++..++++|+..
T Consensus 106 ~~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~ 167 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMF---YSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFC 167 (391)
T ss_dssp SCTTCEEEECSSCCHHH---HHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEE
T ss_pred CCCCCeEEECCCCcHHH---HHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEE
Confidence 67888888777655543 33555678877766543 567788888876677877654
No 89
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=30.47 E-value=82 Score=29.52 Aligned_cols=62 Identities=16% Similarity=0.028 Sum_probs=39.3
Q ss_pred HHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccc-----hhHHHHHHHHHhcC--ceEEEec
Q 010114 14 ANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS-----FAAREIATRLRVSK--AKGIFTQ 78 (518)
Q Consensus 14 a~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~-----~~~~~i~~~l~~~~--~~~ii~~ 78 (518)
...|+.. +++||.|.+-.+....+ .-++...|+.++.++.+ ...+++...+..-+ +++|+..
T Consensus 67 ~~al~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 67 MAAIQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 3344555 78999988877765543 34556778876665432 46777877774444 7777643
No 90
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=30.30 E-value=1.7e+02 Score=26.96 Aligned_cols=33 Identities=9% Similarity=0.057 Sum_probs=14.1
Q ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHcCceeEec
Q 010114 22 SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 54 (518)
Q Consensus 22 ~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l 54 (518)
++||.|.+..+...-+.-...++...|+.++.+
T Consensus 87 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v 119 (384)
T 1eg5_A 87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYV 119 (384)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEE
Confidence 455555554444333333333333445544433
No 91
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=29.85 E-value=1.1e+02 Score=30.96 Aligned_cols=90 Identities=4% Similarity=-0.163 Sum_probs=64.9
Q ss_pred CCCCEEEEEeccCCCCCCceEEeccchhHHHhhhcc---ccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecC
Q 010114 145 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 221 (518)
Q Consensus 145 ~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~ 221 (518)
.++.++.+.. . -.+|...+........ ...++.++|++...++-+.. ....+++.+..|+..+.+++
T Consensus 40 ~Pd~~Av~~~-~--------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~-~vva~lailkaGa~~vpld~ 109 (620)
T 4dg8_A 40 HPHREAIRDR-F--------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRE-SITCLLAILLSGHHYLYIDL 109 (620)
T ss_dssp CTTSEEEEET-T--------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHH-HHHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEcC-C--------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEeeCc
Confidence 3477776531 1 2477776655544333 34578999999988886533 33448899999999999998
Q ss_pred CCChhHHHHHHHHcCccEEEech
Q 010114 222 SPLERSFGKFVQDAGVTVLGTVP 244 (518)
Q Consensus 222 ~~~~~~~~~~i~~~~~t~l~~~P 244 (518)
....+.+...+++.++..++...
T Consensus 110 ~~p~~~l~~il~~~~~~~vl~~~ 132 (620)
T 4dg8_A 110 KQPAAWNAELCRQVDCRLILDCS 132 (620)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECC
T ss_pred cChHHHHHHHHHhCCCcEEEecC
Confidence 88888999999999999888543
No 92
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=28.33 E-value=1.6e+02 Score=24.01 Aligned_cols=71 Identities=11% Similarity=0.165 Sum_probs=44.5
Q ss_pred hhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEE--ecCCCCCChhHHHHHHHHHHHhccCCccccceEEEecC
Q 010114 415 SVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVV--LKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPE 490 (518)
Q Consensus 415 ~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~--~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~ 490 (518)
-.|+++.|. ..++|..+-|...-++... ..+.|-|+ ++++...+.... .|+..+..-++. +.|..|-++|.
T Consensus 92 egELartI~-~i~~V~~ARVhl~lP~~~~-~~~sASV~l~~~~g~~l~~~q~--~I~~LVa~SV~g-L~~enVtVvdq 164 (171)
T 1yj7_A 92 EQDIERLLS-KIPGVIDCSVSLNVNNNES-QPSSAAVLVISSPEVNLAPSVI--QIKNLVKNSVDD-LKLENISVVIK 164 (171)
T ss_dssp HHHHHHHHT-TSTTEEEEEEEEEC--------CEEEEEEEECTTCCCGGGHH--HHHHHHHHHSTT-CCGGGEEEEEE
T ss_pred HHHHHHHHH-cCCCeeEEEEEEECCCCCC-CCceEEEEEEeCCCCCCcHhHH--HHHHHHHHhcCC-CCcccEEEEeC
Confidence 568999997 9999999988666444333 34444444 555666666542 477767666654 66788888874
No 93
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=28.31 E-value=1.7e+02 Score=27.35 Aligned_cols=59 Identities=15% Similarity=0.101 Sum_probs=36.5
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHHHH-HcCceeEeccc------------chhHHHHHHHHHhcCceEEEech
Q 010114 21 FSKGDAIAIDMPMTV------RAVIIYLAII-LAGYVVVSIAD------------SFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 21 v~~g~~V~i~~~~~~------e~~v~~lA~~-~~G~~~v~l~~------------~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+++||+|+|+.|.+. +-+-.-.+.+ ..|..++.-.. ....+++..++.+-.++.|++..
T Consensus 40 Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 40 LAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 899999999999873 2222222222 35776664321 12245667777777788888764
No 94
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=28.00 E-value=2e+02 Score=27.92 Aligned_cols=67 Identities=9% Similarity=0.056 Sum_probs=49.2
Q ss_pred HHHHHHhhc--cCCCCEEEEEcCCCHHHHHHHHHHHH----cC--ceeEecccchh-H------HHHHHHHHhcCceEEE
Q 010114 12 LVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIIL----AG--YVVVSIADSFA-A------REIATRLRVSKAKGIF 76 (518)
Q Consensus 12 ~la~~L~~~--v~~g~~V~i~~~~~~e~~v~~lA~~~----~G--~~~v~l~~~~~-~------~~i~~~l~~~~~~~ii 76 (518)
++.+.+.+. +.+|++|++.++-++|..+++..+.. .| ..++.++..+. + +.+..+.+..+..+.+
T Consensus 4 kv~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v 83 (464)
T 3a2k_A 4 KVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCET 83 (464)
T ss_dssp HHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEE
Confidence 455666665 89999999999999999998887776 34 45566676653 2 2456677888888777
Q ss_pred ec
Q 010114 77 TQ 78 (518)
Q Consensus 77 ~~ 78 (518)
.+
T Consensus 84 ~~ 85 (464)
T 3a2k_A 84 AQ 85 (464)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 95
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=26.93 E-value=3e+02 Score=24.60 Aligned_cols=59 Identities=14% Similarity=0.099 Sum_probs=42.2
Q ss_pred cCCCC--EEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEechh
Q 010114 21 FSKGD--AIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 80 (518)
Q Consensus 21 v~~g~--~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~ 80 (518)
+++|+ .|.. ...+-.-..+.++|.++|..++.+-|...+..-...++..++++++++..
T Consensus 57 ~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 57 LRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp CCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred CCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 66666 4444 45566666667778899987776666555566677899999999998753
No 96
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=26.87 E-value=4e+02 Score=24.96 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=34.4
Q ss_pred CCEEEEEcCCCHHHHHHHHHHHHcCceeEecccc---hhHHHHHHHHHhcCceEEEech
Q 010114 24 GDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS---FAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 24 g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~---~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
||.|++--|.-..+. -++...|+.+++++.. +..+.+...++..++++|++.+
T Consensus 133 gd~V~v~~p~y~~~~---~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~p 188 (427)
T 3ppl_A 133 TVKWICPVPGYDRHF---SITERFGFEMISVPMNEDGPDMDAVEELVKNPQVKGMWVVP 188 (427)
T ss_dssp CCEEEEEESCCHHHH---HHHHHTTCEEEEEEEETTEECHHHHHHHTTSTTEEEEEECC
T ss_pred CCEEEEcCCCcHHHH---HHHHHcCCEEEEeCCCCCCCCHHHHHHHHhcCCCeEEEECC
Confidence 899888877665543 3445567766555432 4566777777656788887654
No 97
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=26.70 E-value=1.1e+02 Score=29.90 Aligned_cols=78 Identities=9% Similarity=0.048 Sum_probs=57.7
Q ss_pred EEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccEEEech
Q 010114 165 IPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVP 244 (518)
Q Consensus 165 v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P 244 (518)
-.+|...+..........+ ..++++...++.+.. ....+++++..|+..+.+++....+++...+++.++..++..+
T Consensus 47 ~~~Ty~eL~~~~~~~A~~L--~~~~~V~i~~~~~~~-~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~ 123 (505)
T 3nyq_A 47 RSLTYAELAAAAGATAGRI--GGAGRVAVWATPAME-TGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPP 123 (505)
T ss_dssp EEEEHHHHHHHHHHHHTTC--C---CEEEECCSSHH-HHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECT
T ss_pred eeeeHHHHHHHHHHHHhhc--cCCCEEEEEcCCCHH-HHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECC
Confidence 3578888777666555544 457788877776432 3344889999999999999888889999999999999998865
Q ss_pred H
Q 010114 245 S 245 (518)
Q Consensus 245 ~ 245 (518)
.
T Consensus 124 ~ 124 (505)
T 3nyq_A 124 D 124 (505)
T ss_dssp T
T ss_pred c
Confidence 3
No 98
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=26.68 E-value=2.7e+02 Score=25.77 Aligned_cols=55 Identities=18% Similarity=0.132 Sum_probs=35.9
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhc---CceEEEech
Q 010114 21 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVS---KAKGIFTQD 79 (518)
Q Consensus 21 v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~---~~~~ii~~~ 79 (518)
+++||.|.+..+....+. .++...|+.++.++. ...++++..++.. ++++|++..
T Consensus 124 ~~~gd~V~~~~p~~~~~~---~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~ 181 (398)
T 3a2b_A 124 MGRNDYILLDERDHASII---DGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDG 181 (398)
T ss_dssp SCTTCEEEEETTCCHHHH---HHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEES
T ss_pred hCCCCEEEECCccCHHHH---HHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeC
Confidence 578888887777655443 345557877776654 4566777777765 566766654
No 99
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=26.42 E-value=1.7e+02 Score=26.89 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=36.7
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHHHH-HcCceeEeccc------------chhHHHHHHHHHhcCceEEEech
Q 010114 21 FSKGDAIAIDMPMTV------RAVIIYLAII-LAGYVVVSIAD------------SFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 21 v~~g~~V~i~~~~~~------e~~v~~lA~~-~~G~~~v~l~~------------~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+++||+|+++.|.+. +-+-.-.+.+ ..|..++.-.. ....+++..++.+-.++.|++..
T Consensus 9 L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 9 LKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 899999999999874 2222222222 35776664321 12245677777777888888764
No 100
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=26.08 E-value=1.5e+02 Score=27.25 Aligned_cols=33 Identities=12% Similarity=-0.021 Sum_probs=15.2
Q ss_pred HcCceeEecccchhHH-HHHHHHHhcCceEEEec
Q 010114 46 LAGYVVVSIADSFAAR-EIATRLRVSKAKGIFTQ 78 (518)
Q Consensus 46 ~~G~~~v~l~~~~~~~-~i~~~l~~~~~~~ii~~ 78 (518)
.-|-.++..++....- .....+...+.+++.++
T Consensus 86 ~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~ 119 (382)
T 4eb5_A 86 RKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIP 119 (382)
T ss_dssp GGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEEC
T ss_pred CCCCEEEECCCcchHHHHHHHHHHhCCcEEEEec
Confidence 3454444444444322 22333445666666654
No 101
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=26.04 E-value=3.8e+02 Score=24.41 Aligned_cols=52 Identities=23% Similarity=0.232 Sum_probs=33.7
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114 21 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ 78 (518)
Q Consensus 21 v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~ 78 (518)
+++||.|.+.-+....+. .++...|+.++.++ .+.+++...++. ++++|+..
T Consensus 110 ~~~gd~vl~~~p~~~~~~---~~~~~~g~~~~~v~--~d~~~l~~~l~~-~~~~v~~~ 161 (370)
T 2z61_A 110 IDDGDEVLIQNPCYPCYK---NFIRFLGAKPVFCD--FTVESLEEALSD-KTKAIIIN 161 (370)
T ss_dssp CCTTCEEEEESSCCTHHH---HHHHHTTCEEEEEC--SSHHHHHHHCCS-SEEEEEEE
T ss_pred cCCCCEEEEeCCCchhHH---HHHHHcCCEEEEeC--CCHHHHHHhccc-CceEEEEc
Confidence 578888888777655433 34556788777775 556677776654 56665553
No 102
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=25.93 E-value=2e+02 Score=26.28 Aligned_cols=12 Identities=8% Similarity=0.005 Sum_probs=5.9
Q ss_pred HHhcCceEEEec
Q 010114 67 LRVSKAKGIFTQ 78 (518)
Q Consensus 67 l~~~~~~~ii~~ 78 (518)
+...+++++.++
T Consensus 108 ~~~~g~~~~~v~ 119 (382)
T 4hvk_A 108 LQKQGFEVEYIP 119 (382)
T ss_dssp HHHTTCEEEEEC
T ss_pred HHhcCCEEEEec
Confidence 344455555543
No 103
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=25.44 E-value=1.7e+02 Score=27.49 Aligned_cols=56 Identities=7% Similarity=0.010 Sum_probs=40.4
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEechh
Q 010114 21 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 80 (518)
Q Consensus 21 v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~ 80 (518)
+++||.|.+--+....+ .-++...|+..++++. ...++++..++..++++|++..-
T Consensus 140 ~~~gd~Vl~~~~~~~~~---~~~~~~~g~~~~~~~~-~d~~~le~~l~~~~~~~vi~~~~ 195 (409)
T 3kki_A 140 CQPNTNVYIDFFAHMSL---WEGARYANAQAHPFMH-NNCDHLRMLIQRHGPGIIVVDSI 195 (409)
T ss_dssp CCTTCEEEEETTSCHHH---HHHHHHTTCEEEEECT-TCHHHHHHHHHHHCSCEEEEESB
T ss_pred cCCCCEEEECCCcCHHH---HHHHHHcCCeEEEecC-CCHHHHHHHHHhcCCeEEEECCC
Confidence 78999998876665443 3456667888887644 45678888888777788887753
No 104
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=25.19 E-value=1.6e+02 Score=29.13 Aligned_cols=97 Identities=12% Similarity=0.081 Sum_probs=65.4
Q ss_pred CCCCEEEEEeccCCCCCCc--eEEeccchhHHHhhhccc---cccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEe
Q 010114 145 PVDAVVNILFSSGTTGEPK--AIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALY 219 (518)
Q Consensus 145 ~~~~~~~i~~TSGtTG~pK--~v~~s~~~~~~~~~~~~~---~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~ 219 (518)
.++.++++... +..+..+ .-.+|...+...+..... ..+. ++|++...++-+.. ....+++++..|+..+.+
T Consensus 33 ~p~~~A~~~~~-~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~-~~~~~lA~~~~Gav~vpl 109 (562)
T 3ite_A 33 HPEWKAVEVAT-GFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLI-AFAIIVGIMKSGNTYVPI 109 (562)
T ss_dssp CTTSEEEEEEE-CC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCchhhhccc-ccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEec
Confidence 34777766543 2222222 245777776555443333 3455 68999888886543 234488999999999999
Q ss_pred cCCCChhHHHHHHHHcCccEEEech
Q 010114 220 QGSPLERSFGKFVQDAGVTVLGTVP 244 (518)
Q Consensus 220 ~~~~~~~~~~~~i~~~~~t~l~~~P 244 (518)
++.....++...+++.++..++...
T Consensus 110 ~~~~~~~~l~~~l~~~~~~~~i~~~ 134 (562)
T 3ite_A 110 EAGLPNDRKSFLLRDSRAAMAFVCD 134 (562)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECT
T ss_pred CCcCHHHHHHHHHHhcCCCEEEEcc
Confidence 9888889999999999999887654
No 105
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=24.85 E-value=1.7e+02 Score=26.90 Aligned_cols=58 Identities=14% Similarity=-0.011 Sum_probs=35.0
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccc----hhHHHHHHHHHhcCceEEEech
Q 010114 21 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS----FAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 21 v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~----~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+++||.|.+.-+...-. ...-.+...|+.++.++.. ...++++..++..++++|+...
T Consensus 74 ~~~gd~vi~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 135 (384)
T 3zrp_A 74 LKPNDKILVVSNGVFGD-RWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTH 135 (384)
T ss_dssp CCTTCEEEEECSSHHHH-HHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEES
T ss_pred cCCCCEEEEecCCcchH-HHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeC
Confidence 78888887775533221 1122234557766655433 3567888888876777777654
No 106
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=24.61 E-value=1.9e+02 Score=26.64 Aligned_cols=56 Identities=11% Similarity=0.061 Sum_probs=38.5
Q ss_pred c-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114 20 M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ 78 (518)
Q Consensus 20 ~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~ 78 (518)
. +++|++|++...-.+-.+.+.+|-...|+..+.+..+ ++. ..+++..+++.++..
T Consensus 182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~--~~~-~~~~~~lGa~~vi~~ 238 (359)
T 1h2b_A 182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK--EEK-LKLAERLGADHVVDA 238 (359)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS--HHH-HHHHHHTTCSEEEET
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC--HHH-HHHHHHhCCCEEEec
Confidence 6 8999999999986667777777665438865555433 333 344567888887743
No 107
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=24.30 E-value=2.7e+02 Score=27.42 Aligned_cols=58 Identities=21% Similarity=0.169 Sum_probs=44.6
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 21 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 21 v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+++|+.|.. ...+-.-..+.+||.++|..++.+-|.-.+......++.++++++++..
T Consensus 110 ~~~g~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 110 LKPGYTIIE-PTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167 (527)
T ss_dssp CCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred CCCCCEEEE-eCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCC
Confidence 778887765 4556666667778888899877766666566777889999999999875
No 108
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=24.17 E-value=1.8e+02 Score=25.69 Aligned_cols=72 Identities=3% Similarity=-0.081 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhhc--cCCCCEEEEEcCCCHHHHHHHHHHHHcC---ceeEecccch----hHHHHHHHHHhcCceEEEe
Q 010114 7 REQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAG---YVVVSIADSF----AAREIATRLRVSKAKGIFT 77 (518)
Q Consensus 7 ~~~~~~la~~L~~~--v~~g~~V~i~~~~~~e~~v~~lA~~~~G---~~~v~l~~~~----~~~~i~~~l~~~~~~~ii~ 77 (518)
.+..+++..+|++. -..++.|++.++-++|..++..-+.+++ ...+.++... ..+....+.+..+.++.+.
T Consensus 6 ~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~~~l~~~~~~~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~~i 85 (268)
T 1xng_A 6 QKLIVYLCDFLEKEVQKRGFKKVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSSVSMPENKTDALNLCEKFSIPYTEY 85 (268)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHHGGGEEEEECCCSSSCHHHHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEccCcHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 34456666777666 3345789999999999988766666654 4455555432 2234566777888888776
Q ss_pred c
Q 010114 78 Q 78 (518)
Q Consensus 78 ~ 78 (518)
+
T Consensus 86 ~ 86 (268)
T 1xng_A 86 S 86 (268)
T ss_dssp C
T ss_pred e
Confidence 5
No 109
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=23.39 E-value=1.7e+02 Score=26.53 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=42.1
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114 21 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 21 v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+++|+.|... ..+-.-..+.++|.++|..++.+-|...+..-...++..++++++++.
T Consensus 59 ~~~~~~vv~~-ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 116 (316)
T 1y7l_A 59 LTKGKEIVDA-TSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEG 116 (316)
T ss_dssp SCTTCEEEES-CCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred CCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Confidence 5666665554 456666666777788998777666655556667789999999999875
No 110
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=22.51 E-value=2.1e+02 Score=26.04 Aligned_cols=59 Identities=15% Similarity=0.054 Sum_probs=40.9
Q ss_pred HHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114 16 ALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ 78 (518)
Q Consensus 16 ~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~ 78 (518)
.|... +++|++|++.....+-.+.+.+|-. .|+..+.++.+ ++. ...++..+++.++..
T Consensus 158 ~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~-~Ga~Vi~~~~~--~~~-~~~~~~lGa~~~i~~ 217 (340)
T 3s2e_A 158 GLKVTDTRPGQWVVISGIGGLGHVAVQYARA-MGLRVAAVDID--DAK-LNLARRLGAEVAVNA 217 (340)
T ss_dssp HHHTTTCCTTSEEEEECCSTTHHHHHHHHHH-TTCEEEEEESC--HHH-HHHHHHTTCSEEEET
T ss_pred HHHHcCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC--HHH-HHHHHHcCCCEEEeC
Confidence 34444 9999999999887777777766664 68876665443 333 345677888887754
No 111
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=22.49 E-value=1.7e+02 Score=27.35 Aligned_cols=60 Identities=12% Similarity=-0.015 Sum_probs=43.3
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEechh
Q 010114 21 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 80 (518)
Q Consensus 21 v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~ 80 (518)
.+.|....+....+-.-..+.++|.+.|..++.+-|...+......++.+++++++++..
T Consensus 89 ~~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~ 148 (364)
T 4h27_A 89 AKQGCAHFVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGEL 148 (364)
T ss_dssp HHTTCCEEEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECSS
T ss_pred HhcCCCEEEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 334544444455566666677788889988776666666677788899999999999753
No 112
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=22.21 E-value=3.6e+02 Score=24.45 Aligned_cols=56 Identities=11% Similarity=0.086 Sum_probs=35.3
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecc--cc----hhHHHHHHHHHh----cCceEEEech
Q 010114 21 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA--DS----FAAREIATRLRV----SKAKGIFTQD 79 (518)
Q Consensus 21 v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~--~~----~~~~~i~~~l~~----~~~~~ii~~~ 79 (518)
+++||.|.+.-+....+... +...|+.++.++ .. ...++++..++. -++++++...
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~ 155 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITY 155 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEES
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEEC
Confidence 67888888877766554433 566777766655 22 256777777764 3566666554
No 113
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=21.95 E-value=1.8e+02 Score=26.31 Aligned_cols=56 Identities=11% Similarity=-0.010 Sum_probs=39.8
Q ss_pred CCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEechh
Q 010114 24 GDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 80 (518)
Q Consensus 24 g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~ 80 (518)
++.|. ....+-.-..+.++|.+.|..++.+-|...+......++.+++++++++..
T Consensus 54 ~~~vv-~~ssGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 109 (318)
T 2rkb_A 54 CRHLV-CSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKV 109 (318)
T ss_dssp CCEEE-ECCCSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSS
T ss_pred CCEEE-EECCchHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHhcCCEEEEECCC
Confidence 34444 444566666667778899987776666555566678889999999998754
No 114
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=21.82 E-value=2.6e+02 Score=25.76 Aligned_cols=58 Identities=19% Similarity=0.355 Sum_probs=38.7
Q ss_pred cCCCCEEEEEcC-CCHHHHHHHHHHHHcCceeEe-cccchhHHHHHHHHHhcCceEEEech
Q 010114 21 FSKGDAIAIDMP-MTVRAVIIYLAIILAGYVVVS-IADSFAAREIATRLRVSKAKGIFTQD 79 (518)
Q Consensus 21 v~~g~~V~i~~~-~~~e~~v~~lA~~~~G~~~v~-l~~~~~~~~i~~~l~~~~~~~ii~~~ 79 (518)
+++|++|++... -.+-.+.+.+|-. .|+..+. ....-...+....++..+++.++...
T Consensus 165 ~~~g~~VlV~Ga~G~vG~~aiqlak~-~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~ 224 (357)
T 1zsy_A 165 LQPGDSVIQNASNSGVGQAVIQIAAA-LGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEE 224 (357)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHH-HTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHH
T ss_pred cCCCCEEEEeCCcCHHHHHHHHHHHH-cCCEEEEEecCccchHHHHHHHHhcCCcEEEecC
Confidence 899999999997 4566666666654 6875443 33333334445567788998887543
No 115
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=21.31 E-value=2.9e+02 Score=26.14 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=27.6
Q ss_pred cCCCCEEEEEcCCCHHHHHHHH-HHHHcCceeEecccchhHHHHHHHHHhcCceEEEe
Q 010114 21 FSKGDAIAIDMPMTVRAVIIYL-AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT 77 (518)
Q Consensus 21 v~~g~~V~i~~~~~~e~~v~~l-A~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~ 77 (518)
+++||.|.+.-+.-......+- .+.+.|+.++.++.. ..++++..++. ++++|+.
T Consensus 117 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~ai~~-~t~~v~l 172 (414)
T 3ndn_A 117 LGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD-DLSQWERALSV-PTQAVFF 172 (414)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHTSS-CCSEEEE
T ss_pred hCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC-CHHHHHHhcCC-CCeEEEE
Confidence 5677776666554444332221 123456665555443 34555555543 4555554
No 116
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=21.23 E-value=3.1e+02 Score=25.58 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=12.9
Q ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCceeE
Q 010114 23 KGDAIAIDMPMTVRAVIIYLAIILAGYVVV 52 (518)
Q Consensus 23 ~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v 52 (518)
+||.|.+.-+....+.-.+..+...|+.++
T Consensus 112 ~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~ 141 (423)
T 3lvm_A 112 KGKHIITSKTEHKAVLDTCRQLEREGFEVT 141 (423)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHHHTTCEEE
T ss_pred CCCEEEECCccchHHHHHHHHHHHcCCEEE
Confidence 455555554444443333322233344433
No 117
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=21.11 E-value=2.6e+02 Score=25.98 Aligned_cols=15 Identities=7% Similarity=-0.150 Sum_probs=6.8
Q ss_pred HHHHHHhcCceEEEe
Q 010114 63 IATRLRVSKAKGIFT 77 (518)
Q Consensus 63 i~~~l~~~~~~~ii~ 77 (518)
....++..+.+++.+
T Consensus 101 ~~~~~~~~g~~~~~v 115 (416)
T 3isl_A 101 LTEIAERYGANVHML 115 (416)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHhcCCeeEEE
Confidence 344444445444444
No 118
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=20.94 E-value=3.1e+02 Score=21.57 Aligned_cols=69 Identities=13% Similarity=0.077 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhccCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHH---HhcCceEEEech
Q 010114 9 QVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRL---RVSKAKGIFTQD 79 (518)
Q Consensus 9 ~~~~la~~L~~~v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l---~~~~~~~ii~~~ 79 (518)
+...+...|.+. ++.++.+++++.-+.-.+.-.+...|..+..++..++..+....+ +....+++++.+
T Consensus 22 K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~ 93 (163)
T 2hjv_A 22 KFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD 93 (163)
T ss_dssp HHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG
T ss_pred HHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 344555555543 445677777765544444455556788888898888776554444 455677777765
No 119
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=20.64 E-value=3.7e+02 Score=27.81 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=39.4
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccc---------h-----hHHHHHHHHHhc-Cce----EEEech
Q 010114 21 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS---------F-----AAREIATRLRVS-KAK----GIFTQD 79 (518)
Q Consensus 21 v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~---------~-----~~~~i~~~l~~~-~~~----~ii~~~ 79 (518)
+++||.|.+--+...... -|+...|+.++.+++. . +.+.++..++.. +.+ ++++++
T Consensus 232 ~~pGD~VLv~r~~H~S~~---~~l~lsGa~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p 306 (715)
T 3n75_A 232 APAGSTILIDRNCHKSLT---HLMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS 306 (715)
T ss_dssp CCTTCEEEEESSCCHHHH---HHHHHSCCEEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS
T ss_pred CCCCCEEEECCCccHHHH---HHHHHcCCEEEEEeccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC
Confidence 789999988877665543 3677889998877753 1 477888888763 333 555555
No 120
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=20.48 E-value=3.1e+02 Score=25.21 Aligned_cols=54 Identities=17% Similarity=0.120 Sum_probs=29.8
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccc-------hhHHHHHHHHHhcCceEEEe
Q 010114 21 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS-------FAAREIATRLRVSKAKGIFT 77 (518)
Q Consensus 21 v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~-------~~~~~i~~~l~~~~~~~ii~ 77 (518)
.++||.|.+.-+.-..+. .++...|+..+.++.. ...+++...++..++++|+.
T Consensus 108 ~~~gd~vl~~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l 168 (390)
T 1d2f_A 108 SETGEGVVIHTPAYDAFY---KAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLL 168 (390)
T ss_dssp SCTTCEEEEEESCCHHHH---HHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEE
T ss_pred cCCCCEEEEcCCCcHHHH---HHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEE
Confidence 467777777666544432 3334556655444321 44566666665545666554
No 121
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=20.47 E-value=4.8e+02 Score=23.59 Aligned_cols=55 Identities=11% Similarity=0.188 Sum_probs=37.1
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecc--c--chhHHHHHHHHHhcCceEEEec
Q 010114 21 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA--D--SFAAREIATRLRVSKAKGIFTQ 78 (518)
Q Consensus 21 v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~--~--~~~~~~i~~~l~~~~~~~ii~~ 78 (518)
+++||.|.+..+.-..+. .++...|+.++.++ + ....+++...++..++++|+..
T Consensus 106 ~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 164 (367)
T 3euc_A 106 ARPGAKVMAPVPGFVMYA---MSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLA 164 (367)
T ss_dssp CCTTCEEEEEESCSCCSC---HHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCEEEEcCCCHHHHH---HHHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEc
Confidence 689999988766554332 33556787666544 3 3467888888887678887764
No 122
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=20.43 E-value=3.3e+02 Score=24.80 Aligned_cols=53 Identities=4% Similarity=0.036 Sum_probs=31.0
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccc-------hhHHHHHHHHHhcCceEEEe
Q 010114 21 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS-------FAAREIATRLRVSKAKGIFT 77 (518)
Q Consensus 21 v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~-------~~~~~i~~~l~~~~~~~ii~ 77 (518)
+++||.|.+..+....+. .++...|+.++.++.. ...+++...+ ..++++++.
T Consensus 103 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~i 162 (383)
T 3kax_A 103 TKENESVLVQPPIYPPFF---EMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQF-QQGVKLMLL 162 (383)
T ss_dssp CCTTCEEEECSSCCHHHH---HHHHHTTCEEEECCCEEETTEEECCHHHHHHHH-TTTCCEEEE
T ss_pred CCCCCEEEEcCCCcHHHH---HHHHHcCCEEEeccceecCCcEEEcHHHHHHHh-CcCCeEEEE
Confidence 567787776666554433 3455567766655432 3556666666 445666554
No 123
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}
Probab=20.40 E-value=2.1e+02 Score=26.40 Aligned_cols=59 Identities=14% Similarity=-0.048 Sum_probs=40.9
Q ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccch-hHHHHHHHHHhcCceEEEechh
Q 010114 22 SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF-AAREIATRLRVSKAKGIFTQDF 80 (518)
Q Consensus 22 ~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~-~~~~i~~~l~~~~~~~ii~~~~ 80 (518)
+.|....+....+-.-..+.++|.+.|..++.+-|.. .+..-...++..++++++++..
T Consensus 76 ~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~~ 135 (352)
T 2zsj_A 76 EAGKRAVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQGT 135 (352)
T ss_dssp HTTCCEEEECCSSHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHHHTTCEEEEESSC
T ss_pred hcCCCEEEEeCCchHHHHHHHHHHhcCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3444444445566655656688889999877666654 4555667899999999998764
No 124
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Probab=20.21 E-value=2e+02 Score=26.57 Aligned_cols=59 Identities=12% Similarity=-0.036 Sum_probs=40.7
Q ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccch-hHHHHHHHHHhcCceEEEechh
Q 010114 22 SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF-AAREIATRLRVSKAKGIFTQDF 80 (518)
Q Consensus 22 ~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~-~~~~i~~~l~~~~~~~ii~~~~ 80 (518)
+.|....+....+-.-..+.++|.+.|..++.+-|.. .+..-...++..++++++++..
T Consensus 74 ~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~V~~v~~~ 133 (351)
T 3aey_A 74 EGGAQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGN 133 (351)
T ss_dssp HTTCSEEEESCSSHHHHHHHHHHHHHTSEEEEEEETTCSCHHHHHHHHHTTCEEEEEESC
T ss_pred hcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3444444445566555656688888999877665654 4555667889999999998764
Done!