Query 010115
Match_columns 518
No_of_seqs 427 out of 3440
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 21:13:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010115.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010115hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02193 nitrile-specifier pro 100.0 8.7E-45 1.9E-49 380.5 41.0 336 40-388 119-469 (470)
2 PLN02153 epithiospecifier prot 100.0 2.9E-43 6.4E-48 355.9 37.3 305 72-387 5-339 (341)
3 KOG4441 Proteins containing BT 100.0 1.6E-42 3.4E-47 367.8 31.4 287 25-342 266-555 (571)
4 KOG4693 Uncharacterized conser 100.0 5.7E-42 1.2E-46 310.4 24.6 336 75-474 3-357 (392)
5 KOG4441 Proteins containing BT 100.0 5.7E-41 1.2E-45 355.9 28.9 269 96-394 282-553 (571)
6 PLN02193 nitrile-specifier pro 100.0 1.2E-38 2.6E-43 334.1 38.4 287 91-394 113-417 (470)
7 PLN02153 epithiospecifier prot 100.0 9.2E-39 2E-43 323.1 32.6 294 29-334 20-340 (341)
8 PHA02713 hypothetical protein; 100.0 1.8E-38 4E-43 338.2 29.8 262 100-394 259-540 (557)
9 KOG4693 Uncharacterized conser 100.0 4.3E-39 9.4E-44 291.7 20.4 275 33-320 15-313 (392)
10 PHA02713 hypothetical protein; 100.0 1.9E-38 4.2E-43 338.0 28.4 242 72-341 280-541 (557)
11 KOG0379 Kelch repeat-containin 100.0 8.2E-37 1.8E-41 319.4 33.0 300 81-389 53-359 (482)
12 TIGR03547 muta_rot_YjhT mutatr 100.0 1.6E-36 3.4E-41 307.7 31.5 274 84-385 3-344 (346)
13 PRK14131 N-acetylneuraminic ac 100.0 9.6E-36 2.1E-40 304.5 30.6 287 72-392 15-373 (376)
14 TIGR03548 mutarot_permut cycli 100.0 1.9E-35 4.1E-40 296.8 30.1 262 87-376 2-315 (323)
15 PHA03098 kelch-like protein; P 100.0 1.7E-35 3.6E-40 317.4 30.0 246 72-343 272-521 (534)
16 TIGR03547 muta_rot_YjhT mutatr 100.0 6.1E-35 1.3E-39 296.1 28.3 264 36-331 12-344 (346)
17 PHA03098 kelch-like protein; P 100.0 2.7E-34 6E-39 308.0 30.4 262 100-394 252-518 (534)
18 PRK14131 N-acetylneuraminic ac 100.0 1.9E-34 4E-39 295.0 27.6 272 36-339 33-374 (376)
19 TIGR03548 mutarot_permut cycli 100.0 3.1E-34 6.7E-39 288.0 28.0 261 36-320 8-314 (323)
20 KOG4152 Host cell transcriptio 100.0 7.7E-34 1.7E-38 277.6 20.8 303 72-388 15-364 (830)
21 PHA02790 Kelch-like protein; P 100.0 8.6E-33 1.9E-37 290.7 28.3 211 94-340 267-477 (480)
22 KOG0379 Kelch repeat-containin 100.0 6.4E-33 1.4E-37 290.1 25.3 246 143-394 57-308 (482)
23 KOG1230 Protein containing rep 100.0 3.5E-33 7.7E-38 267.4 20.5 247 84-341 62-348 (521)
24 PHA02790 Kelch-like protein; P 100.0 3.2E-31 6.9E-36 278.8 28.2 209 152-393 267-476 (480)
25 KOG1230 Protein containing rep 100.0 1.7E-31 3.7E-36 255.8 22.8 238 41-292 78-349 (521)
26 KOG4152 Host cell transcriptio 100.0 8.1E-31 1.8E-35 256.5 20.3 286 33-333 34-363 (830)
27 COG3055 Uncharacterized protei 99.8 3.9E-18 8.5E-23 162.5 22.1 264 36-332 41-373 (381)
28 COG3055 Uncharacterized protei 99.8 6E-17 1.3E-21 154.5 23.4 273 84-386 32-373 (381)
29 KOG2437 Muskelin [Signal trans 99.7 3.4E-17 7.5E-22 161.1 7.9 269 123-393 238-540 (723)
30 KOG2437 Muskelin [Signal trans 99.7 3.8E-18 8.3E-23 167.8 -0.9 295 71-376 236-595 (723)
31 PF13964 Kelch_6: Kelch motif 99.1 1.6E-10 3.4E-15 81.8 6.5 50 197-249 1-50 (50)
32 PF13964 Kelch_6: Kelch motif 99.1 2E-10 4.4E-15 81.2 6.2 50 146-198 1-50 (50)
33 PF03089 RAG2: Recombination a 99.0 2.9E-08 6.4E-13 92.5 16.8 207 194-414 19-274 (337)
34 PLN02772 guanylate kinase 98.9 8.5E-09 1.8E-13 103.0 11.8 90 194-285 21-110 (398)
35 PF13415 Kelch_3: Galactose ox 98.9 3.9E-09 8.5E-14 74.2 6.1 48 207-257 1-49 (49)
36 PF01344 Kelch_1: Kelch motif; 98.9 6.2E-09 1.4E-13 72.5 5.9 45 146-190 1-45 (47)
37 PF01344 Kelch_1: Kelch motif; 98.8 4.5E-09 9.7E-14 73.2 4.9 44 197-240 1-44 (47)
38 PF13415 Kelch_3: Galactose ox 98.8 8.1E-09 1.8E-13 72.6 5.6 48 156-206 1-49 (49)
39 PF13418 Kelch_4: Galactose ox 98.8 5.2E-09 1.1E-13 73.6 4.6 47 197-246 1-48 (49)
40 PLN02772 guanylate kinase 98.8 5.2E-08 1.1E-12 97.5 11.6 88 144-234 22-110 (398)
41 PF07646 Kelch_2: Kelch motif; 98.7 2.8E-08 6E-13 69.8 6.3 44 197-240 1-46 (49)
42 PF07646 Kelch_2: Kelch motif; 98.7 3.7E-08 8.1E-13 69.2 6.0 45 248-293 1-48 (49)
43 PF03089 RAG2: Recombination a 98.7 1.9E-06 4E-11 80.7 18.6 171 145-320 20-230 (337)
44 PF13418 Kelch_4: Galactose ox 98.7 1.8E-08 3.9E-13 70.8 4.0 45 146-190 1-46 (49)
45 PF07250 Glyoxal_oxid_N: Glyox 98.6 2.9E-06 6.3E-11 80.2 18.8 151 175-346 48-211 (243)
46 PF13854 Kelch_5: Kelch motif 98.6 1.2E-07 2.7E-12 64.0 5.4 40 85-124 1-42 (42)
47 PF13854 Kelch_5: Kelch motif 98.6 1.4E-07 3.1E-12 63.7 5.6 40 194-233 1-41 (42)
48 smart00612 Kelch Kelch domain. 98.5 2.6E-07 5.7E-12 64.0 4.6 47 209-259 1-47 (47)
49 smart00612 Kelch Kelch domain. 98.4 6.7E-07 1.5E-11 61.9 4.7 46 262-310 2-47 (47)
50 TIGR01640 F_box_assoc_1 F-box 98.2 0.00052 1.1E-08 65.3 22.3 204 174-389 15-230 (230)
51 TIGR01640 F_box_assoc_1 F-box 98.1 0.0011 2.3E-08 63.1 23.5 202 114-335 14-230 (230)
52 PF07250 Glyoxal_oxid_N: Glyox 98.0 0.00012 2.6E-09 69.3 14.1 143 225-391 47-201 (243)
53 PRK11138 outer membrane biogen 97.8 0.06 1.3E-06 55.7 30.1 255 72-390 44-315 (394)
54 PRK11138 outer membrane biogen 97.5 0.09 2E-06 54.3 26.5 227 91-390 113-356 (394)
55 TIGR03300 assembly_YfgL outer 97.3 0.24 5.2E-06 50.7 28.1 227 92-390 59-300 (377)
56 PF13360 PQQ_2: PQQ-like domai 97.1 0.28 6.1E-06 46.3 25.8 185 95-336 33-233 (238)
57 PF08450 SGL: SMP-30/Gluconola 97.1 0.31 6.7E-06 46.6 24.9 222 98-370 11-243 (246)
58 PRK13684 Ycf48-like protein; P 96.9 0.48 1E-05 47.7 24.0 243 72-374 74-323 (334)
59 TIGR03300 assembly_YfgL outer 96.9 0.67 1.4E-05 47.4 25.9 188 93-339 100-305 (377)
60 TIGR03866 PQQ_ABC_repeats PQQ- 96.6 0.73 1.6E-05 44.7 27.5 186 100-337 2-191 (300)
61 PF14870 PSII_BNR: Photosynthe 96.6 0.81 1.8E-05 45.1 23.7 257 72-394 4-268 (302)
62 PF12768 Rax2: Cortical protei 96.6 0.026 5.6E-07 55.0 11.5 125 160-292 2-130 (281)
63 PF07893 DUF1668: Protein of u 96.3 0.18 3.8E-06 51.0 15.9 120 155-292 75-216 (342)
64 PF12768 Rax2: Cortical protei 96.3 0.14 3E-06 50.0 14.4 124 211-342 2-130 (281)
65 PF07893 DUF1668: Protein of u 96.2 0.18 3.9E-06 50.9 15.4 117 206-341 75-215 (342)
66 PF14870 PSII_BNR: Photosynthe 96.2 1.5 3.3E-05 43.2 24.9 243 72-374 45-296 (302)
67 PF02191 OLF: Olfactomedin-lik 96.1 1.2 2.7E-05 42.6 19.9 189 156-371 30-237 (250)
68 cd00216 PQQ_DH Dehydrogenases 95.8 3.2 6.9E-05 44.2 24.2 144 72-239 39-192 (488)
69 PF13360 PQQ_2: PQQ-like domai 95.7 1.8 3.9E-05 40.7 27.7 212 115-390 4-233 (238)
70 KOG2055 WD40 repeat protein [G 95.7 0.45 9.6E-06 48.2 15.4 153 99-286 225-377 (514)
71 KOG2055 WD40 repeat protein [G 95.6 0.98 2.1E-05 45.9 17.2 151 156-337 224-378 (514)
72 PRK13684 Ycf48-like protein; P 95.5 3.2 7E-05 41.8 25.7 243 71-374 32-280 (334)
73 PRK04792 tolB translocation pr 95.5 4 8.7E-05 42.9 26.7 148 173-341 242-390 (448)
74 smart00284 OLF Olfactomedin-li 95.2 3.1 6.7E-05 39.8 20.6 162 156-338 34-213 (255)
75 PF02897 Peptidase_S9_N: Proly 94.3 7.5 0.00016 40.2 21.1 255 98-393 134-410 (414)
76 cd00094 HX Hemopexin-like repe 94.2 4.6 9.9E-05 37.1 17.2 152 151-336 11-178 (194)
77 TIGR02800 propeller_TolB tol-p 93.9 8.8 0.00019 39.6 26.2 148 173-341 214-362 (417)
78 PRK05137 tolB translocation pr 93.9 9.6 0.00021 39.8 22.2 193 114-341 226-420 (435)
79 cd00200 WD40 WD40 domain, foun 93.8 5.8 0.00013 37.1 25.6 188 156-390 62-252 (289)
80 KOG0310 Conserved WD40 repeat- 93.7 9.4 0.0002 39.2 20.6 221 97-376 78-302 (487)
81 PF08450 SGL: SMP-30/Gluconola 93.7 6.6 0.00014 37.3 18.9 187 92-315 43-243 (246)
82 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.3 14 0.0003 39.8 24.8 217 152-390 65-336 (527)
83 PF05096 Glu_cyclase_2: Glutam 93.2 3.4 7.3E-05 39.7 14.3 160 150-340 48-210 (264)
84 cd00216 PQQ_DH Dehydrogenases 93.1 14 0.00031 39.3 25.7 124 152-291 57-193 (488)
85 PF08268 FBA_3: F-box associat 92.9 3.9 8.6E-05 34.7 13.3 85 256-342 3-89 (129)
86 cd00094 HX Hemopexin-like repe 92.9 7.6 0.00016 35.7 18.3 151 93-286 11-178 (194)
87 PLN00033 photosystem II stabil 92.7 14 0.0003 38.2 25.9 220 72-341 118-364 (398)
88 PRK00178 tolB translocation pr 92.4 15 0.00033 38.2 26.2 146 173-342 223-372 (430)
89 PRK11028 6-phosphogluconolacto 92.4 13 0.00028 37.1 26.7 240 100-389 3-260 (330)
90 PF10282 Lactonase: Lactonase, 91.8 16 0.00034 36.9 25.3 270 72-389 23-324 (345)
91 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.8 21 0.00046 38.4 23.3 129 92-239 63-198 (527)
92 PRK04922 tolB translocation pr 91.3 21 0.00045 37.3 25.8 146 173-341 228-376 (433)
93 PRK00178 tolB translocation pr 91.2 21 0.00045 37.2 22.9 144 224-392 223-368 (430)
94 PRK11028 6-phosphogluconolacto 91.0 18 0.00039 36.0 21.3 194 158-388 3-206 (330)
95 PRK05137 tolB translocation pr 90.9 23 0.00049 37.0 27.0 188 173-390 226-415 (435)
96 PRK04792 tolB translocation pr 90.8 24 0.00052 37.1 23.8 148 114-292 242-391 (448)
97 PRK04922 tolB translocation pr 90.8 23 0.00051 36.9 21.6 145 224-392 228-373 (433)
98 TIGR02800 propeller_TolB tol-p 90.7 22 0.00048 36.6 23.1 149 114-292 214-363 (417)
99 PF13088 BNR_2: BNR repeat-lik 90.6 17 0.00037 35.1 17.9 231 72-314 28-275 (275)
100 TIGR03866 PQQ_ABC_repeats PQQ- 90.4 17 0.00037 34.9 30.5 232 99-390 43-282 (300)
101 PF05096 Glu_cyclase_2: Glutam 90.4 4.9 0.00011 38.6 11.9 108 206-337 54-161 (264)
102 PF02191 OLF: Olfactomedin-lik 90.3 18 0.00038 34.8 18.7 149 148-316 70-237 (250)
103 PF12217 End_beta_propel: Cata 90.3 17 0.00037 34.6 15.6 131 72-217 113-259 (367)
104 PF08268 FBA_3: F-box associat 89.7 4.3 9.3E-05 34.5 10.2 85 154-240 3-88 (129)
105 PTZ00421 coronin; Provisional 89.3 34 0.00073 36.5 22.9 154 157-340 138-297 (493)
106 PLN00033 photosystem II stabil 89.0 30 0.00065 35.7 27.7 262 72-394 73-363 (398)
107 COG1520 FOG: WD40-like repeat 88.9 29 0.00063 35.3 21.5 200 95-339 65-276 (370)
108 PLN00181 protein SPA1-RELATED; 88.1 53 0.0012 37.3 23.6 140 157-334 545-691 (793)
109 PTZ00421 coronin; Provisional 87.4 44 0.00095 35.6 20.7 63 208-286 138-201 (493)
110 PRK04043 tolB translocation pr 87.0 42 0.00091 35.0 21.1 185 174-390 214-403 (419)
111 cd00200 WD40 WD40 domain, foun 86.9 26 0.00057 32.5 24.4 188 98-336 62-252 (289)
112 PF10282 Lactonase: Lactonase, 86.5 39 0.00084 34.1 26.1 248 103-388 3-276 (345)
113 KOG0310 Conserved WD40 repeat- 84.7 52 0.0011 34.0 18.4 173 97-320 121-301 (487)
114 PLN00181 protein SPA1-RELATED; 84.4 80 0.0017 35.9 26.2 144 156-334 587-739 (793)
115 PRK04043 tolB translocation pr 83.7 59 0.0013 33.8 23.9 191 114-341 213-408 (419)
116 PRK02889 tolB translocation pr 83.6 60 0.0013 33.8 25.4 146 173-341 220-368 (427)
117 KOG2048 WD40 repeat protein [G 82.0 81 0.0017 34.1 20.7 117 254-390 388-508 (691)
118 PRK03629 tolB translocation pr 80.7 77 0.0017 33.1 26.8 147 173-341 223-371 (429)
119 PRK02889 tolB translocation pr 80.1 79 0.0017 32.9 21.0 188 173-391 176-364 (427)
120 PF03178 CPSF_A: CPSF A subuni 79.6 68 0.0015 31.8 15.5 138 157-317 42-190 (321)
121 COG4946 Uncharacterized protei 77.5 95 0.0021 32.3 17.6 186 171-393 105-301 (668)
122 PF09910 DUF2139: Uncharacteri 76.5 80 0.0017 30.9 20.6 143 172-333 77-230 (339)
123 PF12217 End_beta_propel: Cata 75.6 77 0.0017 30.3 22.8 266 94-374 21-334 (367)
124 KOG2321 WD40 repeat protein [G 75.6 28 0.00061 36.8 10.6 124 247-390 132-261 (703)
125 PRK03629 tolB translocation pr 75.0 1.1E+02 0.0024 31.8 22.5 191 114-341 223-414 (429)
126 PLN02919 haloacid dehalogenase 74.9 1.8E+02 0.004 34.3 26.9 219 92-337 627-892 (1057)
127 KOG0772 Uncharacterized conser 74.3 1.2E+02 0.0026 31.9 18.5 240 99-390 179-448 (641)
128 PF02897 Peptidase_S9_N: Proly 73.4 1.2E+02 0.0025 31.3 20.3 147 172-341 251-412 (414)
129 TIGR02658 TTQ_MADH_Hv methylam 72.6 1.1E+02 0.0025 30.9 28.6 261 99-390 13-333 (352)
130 PTZ00420 coronin; Provisional 71.4 1.6E+02 0.0034 32.0 22.1 153 157-341 138-301 (568)
131 PRK01742 tolB translocation pr 71.2 1.4E+02 0.0029 31.2 20.9 140 173-341 228-369 (429)
132 COG4880 Secreted protein conta 71.2 1E+02 0.0022 31.7 13.0 190 109-341 401-598 (603)
133 PRK10115 protease 2; Provision 70.6 1.8E+02 0.004 32.5 24.8 211 98-341 137-354 (686)
134 KOG2048 WD40 repeat protein [G 70.4 1.7E+02 0.0036 31.9 21.4 121 244-388 423-549 (691)
135 COG4257 Vgb Streptogramin lyas 69.6 1.1E+02 0.0025 29.6 17.1 61 275-342 254-314 (353)
136 PF03178 CPSF_A: CPSF A subuni 68.9 1.3E+02 0.0027 29.9 16.9 117 208-342 42-168 (321)
137 PF06433 Me-amine-dh_H: Methyl 68.9 1.3E+02 0.0029 30.2 13.8 116 99-238 3-132 (342)
138 KOG0281 Beta-TrCP (transducin 68.9 71 0.0015 31.8 11.1 225 94-390 202-431 (499)
139 KOG0646 WD40 repeat protein [G 68.8 1.4E+02 0.0031 30.8 13.6 201 90-339 83-313 (476)
140 COG4257 Vgb Streptogramin lyas 66.9 1.3E+02 0.0028 29.3 14.8 114 154-291 197-313 (353)
141 KOG4378 Nuclear protein COP1 [ 66.8 1.1E+02 0.0024 32.0 12.4 91 277-390 189-283 (673)
142 KOG0649 WD40 repeat protein [G 66.5 1.2E+02 0.0026 28.8 18.1 133 155-316 125-263 (325)
143 PF09910 DUF2139: Uncharacteri 66.3 1.4E+02 0.003 29.4 19.4 160 90-283 38-230 (339)
144 PLN02919 haloacid dehalogenase 64.9 2.9E+02 0.0063 32.7 33.4 259 98-390 579-891 (1057)
145 PTZ00420 coronin; Provisional 64.6 2.2E+02 0.0047 31.0 21.9 149 209-389 139-295 (568)
146 smart00284 OLF Olfactomedin-li 64.1 1.4E+02 0.003 28.7 19.4 153 147-315 74-241 (255)
147 KOG2321 WD40 repeat protein [G 63.3 2E+02 0.0044 30.8 13.7 74 195-286 131-208 (703)
148 KOG0315 G-protein beta subunit 61.4 1.5E+02 0.0033 28.3 19.5 191 156-388 51-246 (311)
149 COG3386 Gluconolactonase [Carb 61.1 1.8E+02 0.0039 28.9 21.3 176 175-374 87-277 (307)
150 KOG0649 WD40 repeat protein [G 60.1 1.6E+02 0.0035 28.0 15.2 137 183-341 99-243 (325)
151 KOG0316 Conserved WD40 repeat- 57.4 1.8E+02 0.0038 27.7 13.7 110 206-339 69-179 (307)
152 COG0823 TolB Periplasmic compo 55.3 2.7E+02 0.0058 29.1 13.6 149 174-342 219-368 (425)
153 PRK01742 tolB translocation pr 54.4 2.7E+02 0.0059 28.9 22.1 119 173-318 272-391 (429)
154 KOG0296 Angio-associated migra 51.8 2.7E+02 0.0058 28.1 16.2 147 156-336 75-223 (399)
155 PF02239 Cytochrom_D1: Cytochr 50.9 2.9E+02 0.0062 28.2 18.5 247 98-390 48-305 (369)
156 COG1520 FOG: WD40-like repeat 50.3 2.9E+02 0.0062 28.0 22.6 200 98-332 111-319 (370)
157 COG3823 Glutamine cyclotransfe 49.2 2.3E+02 0.0049 26.5 12.7 57 150-215 49-108 (262)
158 KOG0266 WD40 repeat-containing 48.9 3.4E+02 0.0074 28.5 19.3 94 174-287 226-322 (456)
159 KOG0296 Angio-associated migra 47.5 3.1E+02 0.0068 27.6 21.3 147 98-286 75-223 (399)
160 PF02239 Cytochrom_D1: Cytochr 47.5 2.2E+02 0.0048 29.0 11.3 184 114-340 16-209 (369)
161 TIGR02658 TTQ_MADH_Hv methylam 47.3 3.2E+02 0.007 27.7 25.6 121 157-289 13-142 (352)
162 TIGR03074 PQQ_membr_DH membran 47.1 4.8E+02 0.01 29.6 25.2 80 42-131 136-223 (764)
163 PF14583 Pectate_lyase22: Olig 46.9 3.4E+02 0.0073 27.9 19.3 110 225-342 217-337 (386)
164 PF13088 BNR_2: BNR repeat-lik 45.3 2.8E+02 0.006 26.4 19.3 205 156-369 58-275 (275)
165 COG4946 Uncharacterized protei 45.2 3.9E+02 0.0085 28.1 22.5 58 224-291 382-439 (668)
166 PF15525 DUF4652: Domain of un 44.7 2.5E+02 0.0054 25.6 11.1 72 111-190 85-157 (200)
167 PRK10115 protease 2; Provision 43.6 5.1E+02 0.011 29.0 19.2 126 151-293 274-404 (686)
168 PF07734 FBA_1: F-box associat 41.9 2.4E+02 0.0052 24.7 13.7 86 256-344 3-94 (164)
169 KOG0289 mRNA splicing factor [ 40.1 4.5E+02 0.0097 27.3 14.0 80 174-267 412-494 (506)
170 COG4447 Uncharacterized protei 38.7 3.9E+02 0.0084 26.2 12.7 143 149-318 47-190 (339)
171 KOG0316 Conserved WD40 repeat- 38.1 3.6E+02 0.0078 25.6 12.4 102 155-286 69-176 (307)
172 KOG0646 WD40 repeat protein [G 37.7 4.1E+02 0.009 27.6 11.0 59 149-219 84-146 (476)
173 KOG0266 WD40 repeat-containing 36.7 5.2E+02 0.011 27.1 20.6 146 156-334 257-410 (456)
174 PLN03215 ascorbic acid mannose 36.5 4.8E+02 0.01 26.7 15.2 103 73-191 189-304 (373)
175 KOG0281 Beta-TrCP (transducin 36.5 3.6E+02 0.0077 27.1 9.9 86 225-332 341-427 (499)
176 KOG0289 mRNA splicing factor [ 35.7 5.2E+02 0.011 26.8 12.8 120 199-344 349-473 (506)
177 KOG3881 Uncharacterized conser 32.4 5.6E+02 0.012 26.1 12.3 96 173-284 226-321 (412)
178 PF15525 DUF4652: Domain of un 32.0 4E+02 0.0087 24.3 12.1 77 215-293 79-158 (200)
179 KOG3545 Olfactomedin and relat 31.9 4.6E+02 0.01 25.0 19.1 162 156-340 30-209 (249)
180 KOG0263 Transcription initiati 31.8 4.6E+02 0.01 29.0 10.8 104 208-333 546-649 (707)
181 PF13570 PQQ_3: PQQ-like domai 28.4 1.2E+02 0.0026 19.4 3.9 26 150-182 15-40 (40)
182 PF07433 DUF1513: Protein of u 26.6 6.4E+02 0.014 25.0 12.9 118 246-376 2-123 (305)
183 PLN03215 ascorbic acid mannose 26.6 7.1E+02 0.015 25.5 15.1 98 233-343 189-304 (373)
184 PF06433 Me-amine-dh_H: Methyl 26.5 6.8E+02 0.015 25.2 18.0 72 309-391 249-324 (342)
185 KOG1036 Mitotic spindle checkp 25.8 6.5E+02 0.014 24.8 15.8 129 174-335 36-165 (323)
186 PF14583 Pectate_lyase22: Olig 24.5 6.9E+02 0.015 25.7 10.2 104 156-269 199-303 (386)
187 PF08950 DUF1861: Protein of u 22.8 2.7E+02 0.0058 27.1 6.4 61 204-268 33-95 (298)
188 COG4880 Secreted protein conta 21.8 9.3E+02 0.02 25.1 13.4 64 164-235 397-460 (603)
189 KOG1036 Mitotic spindle checkp 20.6 8.3E+02 0.018 24.1 14.2 102 155-285 63-165 (323)
190 COG3391 Uncharacterized conser 20.5 9.1E+02 0.02 24.6 19.9 161 97-289 84-245 (381)
191 PF05262 Borrelia_P83: Borreli 20.3 6.7E+02 0.014 26.7 9.4 87 168-265 370-456 (489)
192 COG4447 Uncharacterized protei 20.0 8.4E+02 0.018 23.9 12.7 259 41-373 54-323 (339)
No 1
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=8.7e-45 Score=380.50 Aligned_cols=336 Identities=20% Similarity=0.300 Sum_probs=266.0
Q ss_pred CCCceEeccCCCCCCcceecccccccccCCCCCCCCeEEeccCCCCCCCccceEEEEECCEEEEEcCcCC-C-CCCCcEE
Q 010115 40 NSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESG-N-GLLDDVQ 117 (518)
Q Consensus 40 ~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~-~-~~~~~v~ 117 (518)
.+.+|+.|+|+..+.... ..+|..........++|..++..+.+|.+|.+|++++++++|||+||... . ...+++|
T Consensus 119 ~~~~ivgf~G~~~~~~~~--ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~ 196 (470)
T PLN02193 119 QGGKIVGFHGRSTDVLHS--LGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLY 196 (470)
T ss_pred cCCeEEEEeccCCCcEEe--eEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEE
Confidence 466699999977654222 22232211101124899999876678999999999999999999999753 2 2347899
Q ss_pred EEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCC
Q 010115 118 VLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVA 197 (518)
Q Consensus 118 ~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~ 197 (518)
+||+.+++|+.++.+.. .|.++|.+|++++++++|||+||.... ...+++|+||+.+++|+.+++.+..|.+
T Consensus 197 ~yD~~~~~W~~~~~~g~-------~P~~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~~~P~~ 268 (470)
T PLN02193 197 VFDLETRTWSISPATGD-------VPHLSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEGPTP 268 (470)
T ss_pred EEECCCCEEEeCCCCCC-------CCCCcccceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcCCCCCCC
Confidence 99999999998765321 222346789999999999999998653 3568999999999999999874445899
Q ss_pred CcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcE
Q 010115 198 RSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDL 277 (518)
Q Consensus 198 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v 277 (518)
|+.|++++.+++|||+||.+.. ..++++++||+.+++|+.++..+.+|.+|..|++++++++ ||++||.++. ..+++
T Consensus 269 R~~h~~~~~~~~iYv~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gk-iyviGG~~g~-~~~dv 345 (470)
T PLN02193 269 RSFHSMAADEENVYVFGGVSAT-ARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGK-VWVVYGFNGC-EVDDV 345 (470)
T ss_pred ccceEEEEECCEEEEECCCCCC-CCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCc-EEEEECCCCC-ccCce
Confidence 9999999999999999999765 4578999999999999999866668899999999999998 9999998654 36899
Q ss_pred EEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCC---------CCCcCeEEEEECCCCceEEeecCCC--C
Q 010115 278 YSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR---------KKRHAETLIFDILKGEWSVAITSPS--S 346 (518)
Q Consensus 278 ~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~~~~--~ 346 (518)
++||+++++|+++..++..|.+|..|++++++++|||+||... ....+++++||+.+++|+.+...+. .
T Consensus 346 ~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~ 425 (470)
T PLN02193 346 HYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEE 425 (470)
T ss_pred EEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCC
Confidence 9999999999999988778999999999999999999999753 1245789999999999999875432 3
Q ss_pred CCCCCCCceEEEEeeCCccEEEEEcCCCC--CCCCcEEEEEccc
Q 010115 347 SVTSNKGFTLVLVQHKEKDFLVAFGGIKK--EPSNQVEVLSIEK 388 (518)
Q Consensus 347 ~~~~r~~~s~~~~~~~~~~~l~v~GG~~~--~~~~~v~~yd~~~ 388 (518)
.|.+|..++++.....+++.|++|||... +.++|+|+|++++
T Consensus 426 ~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 426 TPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred CCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecCC
Confidence 45666666554333334566999999964 3489999998764
No 2
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=2.9e-43 Score=355.94 Aligned_cols=305 Identities=21% Similarity=0.365 Sum_probs=243.6
Q ss_pred CCCCeEEeccC-CCCCCCccceEEEEECCEEEEEcCcCC--CCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCcc
Q 010115 72 NSENWMVLSIA-GDKPIPRFNHAAAVIGNKMIVVGGESG--NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACR 148 (518)
Q Consensus 72 ~~~~W~~l~~~-~~~p~~R~~~~~~~~~~~lyv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~ 148 (518)
....|..+... +.+|.+|.+|++++++++|||+||... ....+++++||+.+++|+.++++.. .+.+.+.
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~-------~p~~~~~ 77 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGD-------VPRISCL 77 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCC-------CCCCccC
Confidence 56789999753 357899999999999999999999853 2346899999999999999887421 1122345
Q ss_pred ceEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeec--CCCCCCCcceEEEEECCEEEEEcccCCCC-----c
Q 010115 149 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK--GDIPVARSGHTVVRASSVLILFGGEDGKR-----R 221 (518)
Q Consensus 149 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-----~ 221 (518)
+|++++++++||+|||.... ...+++++||+.+++|+.+++. ...|.+|.+|++++.+++|||+||.+... .
T Consensus 78 ~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 156 (341)
T PLN02153 78 GVRMVAVGTKLYIFGGRDEK-REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPE 156 (341)
T ss_pred ceEEEEECCEEEEECCCCCC-CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCc
Confidence 78999999999999998653 3467899999999999998752 12388999999999999999999986432 2
Q ss_pred ccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCC--------CCCCcEEEEEcCCCeEEEeecC
Q 010115 222 KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS--------KTLNDLYSLDFETMIWTRIKIR 293 (518)
Q Consensus 222 ~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~--------~~~~~v~~yd~~~~~W~~v~~~ 293 (518)
.++++++||+++++|+.++..+..|.+|..|++++++++ |||+||.... ...+++++||+++++|+++...
T Consensus 157 ~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~-iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~ 235 (341)
T PLN02153 157 RFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGK-IWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETT 235 (341)
T ss_pred ccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCe-EEEEeccccccccCCccceecCceEEEEcCCCcEEecccc
Confidence 357899999999999999866556789999999999998 9999986421 2357899999999999999887
Q ss_pred CCCCCCCcceEEEEECCEEEEEcccCC---------CCCcCeEEEEECCCCceEEeecCC-CCCCCCCCCceEEEEeeCC
Q 010115 294 GFHPSPRAGCCGVLCGTKWYIAGGGSR---------KKRHAETLIFDILKGEWSVAITSP-SSSVTSNKGFTLVLVQHKE 363 (518)
Q Consensus 294 ~~~p~~r~~~~~~~~~~~iyv~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~~~-~~~~~~r~~~s~~~~~~~~ 363 (518)
+..|.+|..|++++++++|||+||... ....+++|+||+.+++|+.+.... ++.|+.+.+++.+.+. +
T Consensus 236 g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~--~ 313 (341)
T PLN02153 236 GAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVY--G 313 (341)
T ss_pred CCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccC--C
Confidence 777999999999999999999999742 224578999999999999986421 2334555555666554 4
Q ss_pred ccEEEEEcCCCCC--CCCcEEEEEcc
Q 010115 364 KDFLVAFGGIKKE--PSNQVEVLSIE 387 (518)
Q Consensus 364 ~~~l~v~GG~~~~--~~~~v~~yd~~ 387 (518)
++.|||+||.... ..+++++|+..
T Consensus 314 ~~~~~~~gG~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 314 KNGLLMHGGKLPTNERTDDLYFYAVN 339 (341)
T ss_pred cceEEEEcCcCCCCccccceEEEecc
Confidence 5679999999653 48999999764
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.6e-42 Score=367.78 Aligned_cols=287 Identities=24% Similarity=0.361 Sum_probs=254.0
Q ss_pred cccCCCCCCCCccCC--CCCceEeccCCCCCCcceecccccccccCCCCCCCCeEEeccCCCCCCCccceEEEEECCEEE
Q 010115 25 AIRSPIRPPKRNSNP--NSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMI 102 (518)
Q Consensus 25 ~~~~p~~~~~r~~~~--~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~R~~~~~~~~~~~ly 102 (518)
+..+|..+.+|+..+ ..+.|+++||...........+.|++ .++.|..++ ++|.+|..+++++++|+||
T Consensus 266 ~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~~~~~~~~ve~yd~------~~~~w~~~a---~m~~~r~~~~~~~~~~~lY 336 (571)
T KOG4441|consen 266 PQRRPVMQSPRTRPRRSVSGKLVAVGGYNRQGQSLRSVECYDP------KTNEWSSLA---PMPSPRCRVGVAVLNGKLY 336 (571)
T ss_pred cccCccccCCCcccCcCCCCeEEEECCCCCCCcccceeEEecC------CcCcEeecC---CCCcccccccEEEECCEEE
Confidence 333444455565555 34669999997764444444445555 899999998 8999999999999999999
Q ss_pred EEcCcC-CCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEEEEECC
Q 010115 103 VVGGES-GNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTE 181 (518)
Q Consensus 103 v~GG~~-~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~ 181 (518)
++||++ +...++++++||+.+++|..+++| ..+|..++++++++.||++||.++ ....+++++||+.
T Consensus 337 v~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M-----------~~~R~~~~v~~l~g~iYavGG~dg-~~~l~svE~YDp~ 404 (571)
T KOG4441|consen 337 VVGGYDSGSDRLSSVERYDPRTNQWTPVAPM-----------NTKRSDFGVAVLDGKLYAVGGFDG-EKSLNSVECYDPV 404 (571)
T ss_pred EEccccCCCcccceEEEecCCCCceeccCCc-----------cCccccceeEEECCEEEEEecccc-ccccccEEEecCC
Confidence 999999 678899999999999999999985 347789999999999999999984 4557789999999
Q ss_pred CCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcE
Q 010115 182 TECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKN 261 (518)
Q Consensus 182 t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~ 261 (518)
+++|+.+++ |+.+|++|++++++++||++||.+.....++++++|||.+++|+.++ +|+.+|.++++++++++
T Consensus 405 ~~~W~~va~---m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~---~M~~~R~~~g~a~~~~~- 477 (571)
T KOG4441|consen 405 TNKWTPVAP---MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA---PMNTRRSGFGVAVLNGK- 477 (571)
T ss_pred CCcccccCC---CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC---CcccccccceEEEECCE-
Confidence 999999997 99999999999999999999999988668999999999999999998 99999999999999999
Q ss_pred EEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEee
Q 010115 262 LLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (518)
Q Consensus 262 lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 341 (518)
||++||+++......+++|||++++|+.+.++ +.+|..++++++++++|++||.++...++.+.+|||.+++|+.+.
T Consensus 478 iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m---~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~ 554 (571)
T KOG4441|consen 478 IYVVGGFDGTSALSSVERYDPETNQWTMVAPM---TSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVT 554 (571)
T ss_pred EEEECCccCCCccceEEEEcCCCCceeEcccC---ccccccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCC
Confidence 99999998877778899999999999999777 889999999999999999999999999999999999999999976
Q ss_pred c
Q 010115 342 T 342 (518)
Q Consensus 342 ~ 342 (518)
.
T Consensus 555 ~ 555 (571)
T KOG4441|consen 555 E 555 (571)
T ss_pred C
Confidence 3
No 4
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=5.7e-42 Score=310.44 Aligned_cols=336 Identities=26% Similarity=0.439 Sum_probs=274.5
Q ss_pred CeEEeccCCCCCCCccceEEEEECCEEEEEcCcCCC-----CCCCcEEEEEcCCCcEEEcccccc--cCCCCCCCCCCCc
Q 010115 75 NWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGN-----GLLDDVQVLNFDRFSWTAASSKLY--LSPSSLPLKIPAC 147 (518)
Q Consensus 75 ~W~~l~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~-----~~~~~v~~yd~~~~~W~~~~~~~~--~~~~~~~~~~~~r 147 (518)
.|+.-- +--+.|.+|+++.++..||-|||+-.. ...-||+++|..+.+|.++++... ..+..-|.-+-.|
T Consensus 3 ~WTVHL---eGGPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqR 79 (392)
T KOG4693|consen 3 TWTVHL---EGGPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQR 79 (392)
T ss_pred eEEEEe---cCCcccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhh
Confidence 465543 344579999999999999999996322 223489999999999999998432 2233333455678
Q ss_pred cceEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCC-CcccCcE
Q 010115 148 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK-RRKLNDL 226 (518)
Q Consensus 148 ~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~ 226 (518)
++|+.+.+++++|+.||.++.....+.++.||+++++|.+....|-+|.+|.+|+++++++.+|||||+..+ ....+++
T Consensus 80 YGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~ 159 (392)
T KOG4693|consen 80 YGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDT 159 (392)
T ss_pred cCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccc
Confidence 999999999999999999988888899999999999999999889999999999999999999999999654 3467899
Q ss_pred EEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCC---------CCCCCcEEEEEcCCCeEEEeecCCCCC
Q 010115 227 HMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK---------SKTLNDLYSLDFETMIWTRIKIRGFHP 297 (518)
Q Consensus 227 ~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~---------~~~~~~v~~yd~~~~~W~~v~~~~~~p 297 (518)
+.+|..|.+|+.+...|..|.=|..|+++++++. +|||||... ..+.+.+..+|+.++.|..-+..+..|
T Consensus 160 h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~-MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P 238 (392)
T KOG4693|consen 160 HVLDFATMTWREMHTKGDPPRWRDFHTASVIDGM-MYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKP 238 (392)
T ss_pred eeEeccceeeeehhccCCCchhhhhhhhhhccce-EEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCC
Confidence 9999999999999999999999999999999977 999999853 235678999999999999998888889
Q ss_pred CCCcceEEEEECCEEEEEcccCC--CCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCC
Q 010115 298 SPRAGCCGVLCGTKWYIAGGGSR--KKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK 375 (518)
Q Consensus 298 ~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~ 375 (518)
..|..|++.+.+++||||||+.+ +.-.+++|+|||.+..|+.+.. ....|.+|+.+++++++ +++|+|||...
T Consensus 239 ~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~-~Gk~P~aRRRqC~~v~g----~kv~LFGGTsP 313 (392)
T KOG4693|consen 239 GGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISV-RGKYPSARRRQCSVVSG----GKVYLFGGTSP 313 (392)
T ss_pred CcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeec-cCCCCCcccceeEEEEC----CEEEEecCCCC
Confidence 99999999999999999999986 4567899999999999999875 34556778888888876 78999999753
Q ss_pred CCCCcEEEEEcccCCccccccCCCCCCCCceEeecCCCCCcccccccCCCCCCCCcchhhhhhhHhhhhhcCCCCccccc
Q 010115 376 EPSNQVEVLSIEKNESSMGRRSTPNAKGPGQLLFEKRSSSTGLACQLGNGAPQRSVDSVARQNLASAIEQHGSGRKSLSE 455 (518)
Q Consensus 376 ~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~vfgG~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 455 (518)
.+ ++...+.. .-| +- +++.+.++|+
T Consensus 314 ~~-----------------~~~~Spt~------~~G-------------------------------~~-~~~~LiD~SD 338 (392)
T KOG4693|consen 314 LP-----------------CHPLSPTN------YNG-------------------------------MI-SPSGLIDLSD 338 (392)
T ss_pred CC-----------------CCCCCccc------cCC-------------------------------CC-Cccccccccc
Confidence 32 11111100 000 00 3466889999
Q ss_pred ccccCCCCCCCCccccccc
Q 010115 456 FALVDPNPISGNVSLGKQF 474 (518)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~ 474 (518)
.|++|..|+|+++++....
T Consensus 339 LHvLDF~PsLKTLa~~~Vl 357 (392)
T KOG4693|consen 339 LHVLDFAPSLKTLAMQSVL 357 (392)
T ss_pred ceeeecChhHHHHHHHHHH
Confidence 9999999999998877644
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=5.7e-41 Score=355.85 Aligned_cols=269 Identities=24% Similarity=0.358 Sum_probs=242.8
Q ss_pred EECCEEEEEcCcCC-CCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcee
Q 010115 96 VIGNKMIVVGGESG-NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVS 174 (518)
Q Consensus 96 ~~~~~lyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 174 (518)
...+.||++||... ....+.+..||+.++.|..++++ + .+|..+++++++++||++||.+......++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m----------~-~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ 350 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM----------P-SPRCRVGVAVLNGKLYVVGGYDSGSDRLSS 350 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCC----------C-cccccccEEEECCEEEEEccccCCCcccce
Confidence 45688999999886 56788999999999999999984 3 456689999999999999999854456789
Q ss_pred EEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEE
Q 010115 175 VWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (518)
Q Consensus 175 v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (518)
+|+||+.+++|+.+++ |+.+|.+++++++++.||++||.++. ..++++++||+.+++|+.++ +|+.+|+.|++
T Consensus 351 ve~YD~~~~~W~~~a~---M~~~R~~~~v~~l~g~iYavGG~dg~-~~l~svE~YDp~~~~W~~va---~m~~~r~~~gv 423 (571)
T KOG4441|consen 351 VERYDPRTNQWTPVAP---MNTKRSDFGVAVLDGKLYAVGGFDGE-KSLNSVECYDPVTNKWTPVA---PMLTRRSGHGV 423 (571)
T ss_pred EEEecCCCCceeccCC---ccCccccceeEEECCEEEEEeccccc-cccccEEEecCCCCcccccC---CCCcceeeeEE
Confidence 9999999999999987 99999999999999999999999976 57899999999999999998 89999999999
Q ss_pred EEECCcEEEEEcCCCCCC-CCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECC
Q 010115 255 ALYDDKNLLIFGGSSKSK-TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 333 (518)
Q Consensus 255 ~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 333 (518)
++++++ ||++||.++.. .++.+++|||.+++|+.++++ +.+|.++++++++++||++||+++......+++|||.
T Consensus 424 ~~~~g~-iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M---~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~ 499 (571)
T KOG4441|consen 424 AVLGGK-LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM---NTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPE 499 (571)
T ss_pred EEECCE-EEEEcCcCCCccccceEEEEcCCCCceeecCCc---ccccccceEEEECCEEEEECCccCCCccceEEEEcCC
Confidence 999999 99999998766 899999999999999999988 8999999999999999999999986667789999999
Q ss_pred CCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCC-CCcEEEEEcccCCcccc
Q 010115 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMG 394 (518)
Q Consensus 334 ~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~-~~~v~~yd~~~~~w~~~ 394 (518)
+++|+.+.. +..+|..+++++++ +.||++||.++.. .+.|++||+.+++|...
T Consensus 500 ~~~W~~v~~----m~~~rs~~g~~~~~----~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~ 553 (571)
T KOG4441|consen 500 TNQWTMVAP----MTSPRSAVGVVVLG----GKLYAVGGFDGNNNLNTVECYDPETDTWTEV 553 (571)
T ss_pred CCceeEccc----CccccccccEEEEC----CEEEEEecccCccccceeEEcCCCCCceeeC
Confidence 999999852 34677778888886 8899999988765 99999999999999875
No 6
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.2e-38 Score=334.14 Aligned_cols=287 Identities=24% Similarity=0.331 Sum_probs=234.6
Q ss_pred ceEEEEECCEEEEEcCcCCCCCCCcE--EEEEcCC----CcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcC
Q 010115 91 NHAAAVIGNKMIVVGGESGNGLLDDV--QVLNFDR----FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGG 164 (518)
Q Consensus 91 ~~~~~~~~~~lyv~GG~~~~~~~~~v--~~yd~~~----~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG 164 (518)
+...+..+++|+.|+|..... ++.+ +.+++.+ ++|.++.++. ..+.+|.+|++++++++|||+||
T Consensus 113 g~~f~~~~~~ivgf~G~~~~~-~~~ig~y~~~~~~~~~~~~W~~~~~~~--------~~P~pR~~h~~~~~~~~iyv~GG 183 (470)
T PLN02193 113 GVKFVLQGGKIVGFHGRSTDV-LHSLGAYISLPSTPKLLGKWIKVEQKG--------EGPGLRCSHGIAQVGNKIYSFGG 183 (470)
T ss_pred CCEEEEcCCeEEEEeccCCCc-EEeeEEEEecCCChhhhceEEEcccCC--------CCCCCccccEEEEECCEEEEECC
Confidence 344444688999999976543 4444 4446544 7999988642 12447889999999999999999
Q ss_pred cCCCCC-CceeEEEEECCCCcEEEeeecCCCCC-CCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecC
Q 010115 165 KTDSGS-DRVSVWTFDTETECWSVVEAKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT 242 (518)
Q Consensus 165 ~~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 242 (518)
...... ..+++|+||+.+++|+.+++.+++|. .|.+|++++++++||||||.+.. ..++++|+||+.+++|++++..
T Consensus 184 ~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~ 262 (470)
T PLN02193 184 EFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPV 262 (470)
T ss_pred cCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcC
Confidence 864333 34679999999999998876655665 46789999999999999999765 4689999999999999999855
Q ss_pred CCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCC
Q 010115 243 GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK 322 (518)
Q Consensus 243 g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 322 (518)
+..|.+|..|++++++++ |||+||.+....++++++||+.+++|+.++..+..|.+|..|++++++++|||+||....
T Consensus 263 ~~~P~~R~~h~~~~~~~~-iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~- 340 (470)
T PLN02193 263 EEGPTPRSFHSMAADEEN-VYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC- 340 (470)
T ss_pred CCCCCCccceEEEEECCE-EEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-
Confidence 555899999999999888 999999987777899999999999999998766668899999999999999999998653
Q ss_pred CcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCC----------CCCCcEEEEEcccCCcc
Q 010115 323 RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK----------EPSNQVEVLSIEKNESS 392 (518)
Q Consensus 323 ~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~----------~~~~~v~~yd~~~~~w~ 392 (518)
..+++++||+.+++|+.+... ...|.+|..|++++++ ++||||||... ...+++|+||+.+++|.
T Consensus 341 ~~~dv~~yD~~t~~W~~~~~~-g~~P~~R~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 341 EVDDVHYYDPVQDKWTQVETF-GVRPSERSVFASAAVG----KHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred ccCceEEEECCCCEEEEeccC-CCCCCCcceeEEEEEC----CEEEEECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence 468899999999999998743 2346788899998886 78999999753 12579999999999997
Q ss_pred cc
Q 010115 393 MG 394 (518)
Q Consensus 393 ~~ 394 (518)
..
T Consensus 416 ~~ 417 (470)
T PLN02193 416 RL 417 (470)
T ss_pred Ec
Confidence 54
No 7
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=9.2e-39 Score=323.12 Aligned_cols=294 Identities=18% Similarity=0.256 Sum_probs=225.5
Q ss_pred CCCCCCCccCCCCCceEeccCCCCCCcceecccccccccCCCCCCCCeEEeccCCCCCCC-ccceEEEEECCEEEEEcCc
Q 010115 29 PIRPPKRNSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIP-RFNHAAAVIGNKMIVVGGE 107 (518)
Q Consensus 29 p~~~~~r~~~~~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~-R~~~~~~~~~~~lyv~GG~ 107 (518)
|.++..++.+..++.||++||...... ...++++.++. .+++|..++..+..|.. +.+|++++++++||||||.
T Consensus 20 P~pR~~h~~~~~~~~iyv~GG~~~~~~-~~~~~~~~yd~----~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~ 94 (341)
T PLN02153 20 PGPRCSHGIAVVGDKLYSFGGELKPNE-HIDKDLYVFDF----NTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGR 94 (341)
T ss_pred CCCCCcceEEEECCEEEEECCccCCCC-ceeCcEEEEEC----CCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCC
Confidence 444444466666888999999643211 22234444443 88999999754444432 4578999999999999998
Q ss_pred CCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCC-----CCceeEEEEECCC
Q 010115 108 SGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG-----SDRVSVWTFDTET 182 (518)
Q Consensus 108 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~-----~~~~~v~~yd~~t 182 (518)
.....++++++||+.+++|+.++++... ..+.+|..|++++.+++|||+||..... ...+++++||+++
T Consensus 95 ~~~~~~~~v~~yd~~t~~W~~~~~~~~~------~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~ 168 (341)
T PLN02153 95 DEKREFSDFYSYDTVKNEWTFLTKLDEE------GGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIAD 168 (341)
T ss_pred CCCCccCcEEEEECCCCEEEEeccCCCC------CCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCC
Confidence 7777789999999999999998764210 1245778999999999999999986432 1346899999999
Q ss_pred CcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCC-------CcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEE
Q 010115 183 ECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK-------RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (518)
Q Consensus 183 ~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-------~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~ 255 (518)
++|+.++..+..|.+|.+|++++++++|||+||.+.. ...++++++||+.+++|+++...+.+|.+|..|+++
T Consensus 169 ~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~ 248 (341)
T PLN02153 169 GKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHA 248 (341)
T ss_pred CeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeE
Confidence 9999998755567899999999999999999997521 123688999999999999998777789999999999
Q ss_pred EECCcEEEEEcCCC---------CCCCCCcEEEEEcCCCeEEEeecCCCCCCC--CcceEEEEE--CCEEEEEcccCCC-
Q 010115 256 LYDDKNLLIFGGSS---------KSKTLNDLYSLDFETMIWTRIKIRGFHPSP--RAGCCGVLC--GTKWYIAGGGSRK- 321 (518)
Q Consensus 256 ~~~~~~lyv~GG~~---------~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~- 321 (518)
+++++ ||||||.. .....+++|+||+++++|+.+...+.+|.| |..++++.+ +++|||+||....
T Consensus 249 ~~~~~-iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~ 327 (341)
T PLN02153 249 VVGKY-IIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTN 327 (341)
T ss_pred EECCE-EEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCC
Confidence 99988 99999973 233567999999999999999765444444 444444443 4589999999764
Q ss_pred CCcCeEEEEECCC
Q 010115 322 KRHAETLIFDILK 334 (518)
Q Consensus 322 ~~~~~v~~yd~~~ 334 (518)
..+.++|+|+..+
T Consensus 328 ~~~~~~~~~~~~~ 340 (341)
T PLN02153 328 ERTDDLYFYAVNS 340 (341)
T ss_pred ccccceEEEeccc
Confidence 6789999998653
No 8
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-38 Score=338.20 Aligned_cols=262 Identities=11% Similarity=0.154 Sum_probs=221.5
Q ss_pred EEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEEEEE
Q 010115 100 KMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFD 179 (518)
Q Consensus 100 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd 179 (518)
.+++.||... .....+++||+.+++|..+++ +|. +|..|++++++++||++||........+++++||
T Consensus 259 ~l~~~~g~~~-~~~~~v~~yd~~~~~W~~l~~----------mp~-~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd 326 (557)
T PHA02713 259 CLVCHDTKYN-VCNPCILVYNINTMEYSVIST----------IPN-HIINYASAIVDNEIIIAGGYNFNNPSLNKVYKIN 326 (557)
T ss_pred EEEEecCccc-cCCCCEEEEeCCCCeEEECCC----------CCc-cccceEEEEECCEEEEEcCCCCCCCccceEEEEE
Confidence 3555665321 233578999999999999987 333 4567899999999999999864444567899999
Q ss_pred CCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECC
Q 010115 180 TETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 259 (518)
Q Consensus 180 ~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~ 259 (518)
+.+++|..+++ ||.+|..+++++++++||++||.++. ..++++++||+.+++|+.++ ++|.+|..++++++++
T Consensus 327 ~~~n~W~~~~~---m~~~R~~~~~~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g 399 (557)
T PHA02713 327 IENKIHVELPP---MIKNRCRFSLAVIDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQ 399 (557)
T ss_pred CCCCeEeeCCC---CcchhhceeEEEECCEEEEECCcCCC-CCCceEEEEECCCCeEEECC---CCCcccccccEEEECC
Confidence 99999999987 99999999999999999999998755 45789999999999999998 8999999999999998
Q ss_pred cEEEEEcCCCCC------------------CCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCC
Q 010115 260 KNLLIFGGSSKS------------------KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK 321 (518)
Q Consensus 260 ~~lyv~GG~~~~------------------~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 321 (518)
+ ||++||.+.. ...+.+++|||++++|+.++++ +.+|..+++++++++|||+||.++.
T Consensus 400 ~-IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m---~~~r~~~~~~~~~~~IYv~GG~~~~ 475 (557)
T PHA02713 400 Y-IYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF---WTGTIRPGVVSHKDDIYVVCDIKDE 475 (557)
T ss_pred E-EEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC---CcccccCcEEEECCEEEEEeCCCCC
Confidence 8 9999998642 1357899999999999999877 8899999999999999999998754
Q ss_pred CCc-CeEEEEECCC-CceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCcccc
Q 010115 322 KRH-AETLIFDILK-GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMG 394 (518)
Q Consensus 322 ~~~-~~v~~yd~~~-~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~w~~~ 394 (518)
... ..+++|||.+ ++|+.++. ++.+|..+++++++ ++||++||.++. ..+++||+.+++|+..
T Consensus 476 ~~~~~~ve~Ydp~~~~~W~~~~~----m~~~r~~~~~~~~~----~~iyv~Gg~~~~--~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 476 KNVKTCIFRYNTNTYNGWELITT----TESRLSALHTILHD----NTIMMLHCYESY--MLQDTFNVYTYEWNHI 540 (557)
T ss_pred CccceeEEEecCCCCCCeeEccc----cCcccccceeEEEC----CEEEEEeeecce--eehhhcCcccccccch
Confidence 333 4579999999 89999873 45688889999997 889999998764 4899999999998875
No 9
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=4.3e-39 Score=291.75 Aligned_cols=275 Identities=24% Similarity=0.419 Sum_probs=234.6
Q ss_pred CCCccCCCCCceEeccCCCCCCcce--ecccccccccCCCCCCCCeEEeccC----------CCCCCCccceEEEEECCE
Q 010115 33 PKRNSNPNSECVAPSSNHADDRDCE--CTIAGPEVSNGTSGNSENWMVLSIA----------GDKPIPRFNHAAAVIGNK 100 (518)
Q Consensus 33 ~~r~~~~~~~~i~~~GG~~~~~~~~--~~~~~~~~~~~~~~~~~~W~~l~~~----------~~~p~~R~~~~~~~~~~~ 100 (518)
..++++.++.+||.|||...+-.+. ...++-.+|. .+.+|+.+++. ...|..|++|+++.++++
T Consensus 15 VNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa----~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~ 90 (392)
T KOG4693|consen 15 VNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNA----ENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDK 90 (392)
T ss_pred ccceeeeecceEEecCCcccccccccCCcceeEEeec----cceeEEecCcccccccccCCCCccchhhcCceEEEEcce
Confidence 5569999999999999965543332 2233333433 88999999751 123456999999999999
Q ss_pred EEEEcCcCC-CCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCC-CCceeEEEE
Q 010115 101 MIVVGGESG-NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG-SDRVSVWTF 178 (518)
Q Consensus 101 lyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~v~~y 178 (518)
+||.||.++ .+..|-++.||++++.|.+....+ .-+++|.+|++|++++.+|||||+.... ...++++.+
T Consensus 91 ~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G--------~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~l 162 (392)
T KOG4693|consen 91 AYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEG--------FVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVL 162 (392)
T ss_pred EEEEcCccCcccccceeeeeccccccccccceee--------ecCCccCCceeeEECcEEEEecChHHHHHhhhccceeE
Confidence 999999876 567899999999999999887654 3466889999999999999999997633 346789999
Q ss_pred ECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCC--------CcccCcEEEEEcCCCcEEEeecCCCCCCCCC
Q 010115 179 DTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK--------RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (518)
Q Consensus 179 d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~ 250 (518)
|+.|.+|+.+..++..|.-|..|+++++++.+|||||+.+. .++.+.+..+|+.|..|+..+..+-.|.+|.
T Consensus 163 d~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRR 242 (392)
T KOG4693|consen 163 DFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRR 242 (392)
T ss_pred eccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccc
Confidence 99999999999999999999999999999999999999653 2356788999999999999987778999999
Q ss_pred CcEEEEECCcEEEEEcCCCC--CCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCC
Q 010115 251 NHVAALYDDKNLLIFGGSSK--SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR 320 (518)
Q Consensus 251 ~~~~~~~~~~~lyv~GG~~~--~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 320 (518)
.|++.+++++ +|+|||+++ ..-++++|.|||.+..|+.+...|.-|.+|..+++++.++++|+|||.+-
T Consensus 243 SHS~fvYng~-~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 243 SHSTFVYNGK-MYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred ccceEEEcce-EEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 9999999999 999999986 34579999999999999999999999999999999999999999999753
No 10
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-38 Score=338.05 Aligned_cols=242 Identities=16% Similarity=0.222 Sum_probs=213.1
Q ss_pred CCCCeEEeccCCCCCCCccceEEEEECCEEEEEcCcC-CCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccce
Q 010115 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGES-GNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGH 150 (518)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~ 150 (518)
.+++|..++ ++|.+|.++++++++++|||+||.. .....+++++||+.+++|..++++ + .+|..+
T Consensus 280 ~~~~W~~l~---~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m----------~-~~R~~~ 345 (557)
T PHA02713 280 NTMEYSVIS---TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM----------I-KNRCRF 345 (557)
T ss_pred CCCeEEECC---CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC----------c-chhhce
Confidence 899999998 8999999999999999999999975 344578999999999999999873 3 467789
Q ss_pred EEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCC----------
Q 010115 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR---------- 220 (518)
Q Consensus 151 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~---------- 220 (518)
++++++++||++||..+. ...+++++||+.+++|+.+++ ||.+|.++++++++++||++||.+...
T Consensus 346 ~~~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~~---mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~ 421 (557)
T PHA02713 346 SLAVIDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLPD---MPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNS 421 (557)
T ss_pred eEEEECCEEEEECCcCCC-CCCceEEEEECCCCeEEECCC---CCcccccccEEEECCEEEEEeCCCccccccccccccc
Confidence 999999999999998643 346789999999999999987 999999999999999999999986431
Q ss_pred -------cccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCC-CCCcEEEEEcCC-CeEEEee
Q 010115 221 -------RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSLDFET-MIWTRIK 291 (518)
Q Consensus 221 -------~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~~-~~W~~v~ 291 (518)
..++++++|||.+++|+.++ +++.+|..+++++++++ |||+||.+... ..+.+++|||++ ++|+.++
T Consensus 422 ~~~~~~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 422 IDMEEDTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHKDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred ccccccccccceEEEECCCCCeEeecC---CCCcccccCcEEEECCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 12678999999999999998 89999999999999999 99999986433 335689999999 8999998
Q ss_pred cCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEee
Q 010115 292 IRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (518)
Q Consensus 292 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 341 (518)
++ |.+|..+++++++++||++||.++. ..+.+||+.+++|+.+.
T Consensus 498 ~m---~~~r~~~~~~~~~~~iyv~Gg~~~~---~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 498 TT---ESRLSALHTILHDNTIMMLHCYESY---MLQDTFNVYTYEWNHIC 541 (557)
T ss_pred cc---CcccccceeEEECCEEEEEeeecce---eehhhcCcccccccchh
Confidence 77 8999999999999999999998763 36889999999999987
No 11
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=8.2e-37 Score=319.37 Aligned_cols=300 Identities=32% Similarity=0.519 Sum_probs=261.9
Q ss_pred cCCCCCCCccceEEEEECCEEEEEcCcCCCCCCCc--EEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCE
Q 010115 81 IAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDD--VQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKK 158 (518)
Q Consensus 81 ~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~--v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 158 (518)
..+..|.+|.+|+++.+++++|||||........+ +|++|..+..|......+ ..+.+|.+|++++++++
T Consensus 53 ~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g--------~~p~~r~g~~~~~~~~~ 124 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATG--------DEPSPRYGHSLSAVGDK 124 (482)
T ss_pred cCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccC--------CCCCcccceeEEEECCe
Confidence 45678999999999999999999999876655555 999999999999988754 23468899999999999
Q ss_pred EEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEE
Q 010115 159 VLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP 238 (518)
Q Consensus 159 iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 238 (518)
||+|||........++++.||+.|++|+.+.+.+++|.+|.+|+++++++++|||||.+......+++|+||+++.+|.+
T Consensus 125 l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~ 204 (482)
T KOG0379|consen 125 LYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSE 204 (482)
T ss_pred EEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeecccccccee
Confidence 99999998756668899999999999999999998999999999999999999999999887689999999999999999
Q ss_pred eecCCCCCCCCCCcEEEEECCcEEEEEcCCC-CCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcc
Q 010115 239 LHCTGTGPSPRSNHVAALYDDKNLLIFGGSS-KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGG 317 (518)
Q Consensus 239 ~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG 317 (518)
+...|..|.||++|++++++++ ++|+||.+ +..+++|+|.+|+.+.+|+.+...+..|.+|++|++++.+.+++|+||
T Consensus 205 ~~~~g~~P~pR~gH~~~~~~~~-~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG 283 (482)
T KOG0379|consen 205 LDTQGEAPSPRYGHAMVVVGNK-LLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGG 283 (482)
T ss_pred cccCCCCCCCCCCceEEEECCe-EEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcC
Confidence 9999999999999999999999 67777666 788999999999999999999999999999999999988999999999
Q ss_pred cCCC-C-CcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCC--CCCcEEEEEcccC
Q 010115 318 GSRK-K-RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE--PSNQVEVLSIEKN 389 (518)
Q Consensus 318 ~~~~-~-~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~--~~~~v~~yd~~~~ 389 (518)
.... . .+.++|.||+.+..|+++.......+.++..++...+...++..+.++||.... ..++++.......
T Consensus 284 ~~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (482)
T KOG0379|consen 284 GTDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVFSLQIKLL 359 (482)
T ss_pred CcccccccccccccccccccceeeeeccccccccccccccceeeccCCccceeeecCccccccchhhccccccccc
Confidence 8774 2 689999999999999999865535577888899998887777888888885433 3555555544443
No 12
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1.6e-36 Score=307.75 Aligned_cols=274 Identities=17% Similarity=0.221 Sum_probs=213.0
Q ss_pred CCCCCccceEEEEECCEEEEEcCcCCCCCCCcEEEEEc--CCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEE
Q 010115 84 DKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNF--DRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLL 161 (518)
Q Consensus 84 ~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~--~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv 161 (518)
++|.+|..+++++++++|||+||... +++++||+ .+++|..+++ ++..+|..|++++++++|||
T Consensus 3 ~lp~~~~~~~~~~~~~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~----------~p~~~R~~~~~~~~~~~iYv 68 (346)
T TIGR03547 3 DLPVGFKNGTGAIIGDKVYVGLGSAG----TSWYKLDLKKPSKGWQKIAD----------FPGGPRNQAVAAAIDGKLYV 68 (346)
T ss_pred CCCccccCceEEEECCEEEEEccccC----CeeEEEECCCCCCCceECCC----------CCCCCcccceEEEECCEEEE
Confidence 68889999999899999999999743 67899996 5689999987 44457788999999999999
Q ss_pred EcCcCCCC-----CCceeEEEEECCCCcEEEeeecCCCCCCCcceEEE-EECCEEEEEcccCCCC---------------
Q 010115 162 VGGKTDSG-----SDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV-RASSVLILFGGEDGKR--------------- 220 (518)
Q Consensus 162 ~GG~~~~~-----~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~--------------- 220 (518)
+||..... ...+++|+||+.+++|+.++. .+|.+|.+|+++ +++++||++||.+...
T Consensus 69 ~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 146 (346)
T TIGR03547 69 FGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDS 146 (346)
T ss_pred EeCCCCCCCCCcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccc
Confidence 99986422 135789999999999999873 368888888877 7899999999986320
Q ss_pred ------------------cccCcEEEEEcCCCcEEEeecCCCCCC-CCCCcEEEEECCcEEEEEcCCCCCC-CCCcEEEE
Q 010115 221 ------------------RKLNDLHMFDLKSLTWLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSL 280 (518)
Q Consensus 221 ------------------~~~~~~~~yd~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~y 280 (518)
..++++++||+.+++|+.++ ++|. +|..+++++++++ |||+||..... ...+++.|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~y 222 (346)
T TIGR03547 147 EPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHKGNK-LLLINGEIKPGLRTAEVKQY 222 (346)
T ss_pred hhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEECCE-EEEEeeeeCCCccchheEEE
Confidence 02478999999999999997 7885 6889998899988 99999985432 23456666
Q ss_pred E--cCCCeEEEeecCCCC----CCCCcceEEEEECCEEEEEcccCCCC-----------------CcCeEEEEECCCCce
Q 010115 281 D--FETMIWTRIKIRGFH----PSPRAGCCGVLCGTKWYIAGGGSRKK-----------------RHAETLIFDILKGEW 337 (518)
Q Consensus 281 d--~~~~~W~~v~~~~~~----p~~r~~~~~~~~~~~iyv~GG~~~~~-----------------~~~~v~~yd~~~~~W 337 (518)
+ +++++|+.++.++.+ +..+.+|++++++++|||+||.+... ....+.+||+++++|
T Consensus 223 ~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W 302 (346)
T TIGR03547 223 LFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKW 302 (346)
T ss_pred EecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcc
Confidence 5 477899999887321 11234566778899999999975211 123578999999999
Q ss_pred EEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCC--CCcEEEEE
Q 010115 338 SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP--SNQVEVLS 385 (518)
Q Consensus 338 ~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~--~~~v~~yd 385 (518)
+.+... |.+|..+++++++ ++|||+||..... .++|+.|-
T Consensus 303 ~~~~~l----p~~~~~~~~~~~~----~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 303 SKVGKL----PQGLAYGVSVSWN----NGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred cccCCC----CCCceeeEEEEcC----CEEEEEeccCCCCCEeeeEEEEE
Confidence 998743 4567777776665 8899999987543 77887664
No 13
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=9.6e-36 Score=304.49 Aligned_cols=287 Identities=17% Similarity=0.254 Sum_probs=221.9
Q ss_pred CCCCeEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCCcEEEEEcC--CCcEEEcccccccCCCCCCCCCCCccc
Q 010115 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFD--RFSWTAASSKLYLSPSSLPLKIPACRG 149 (518)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~~~~~~~~~~~~~~~r~~ 149 (518)
..-.++.++ ++|.+|..+++++++++|||+||... +.+++||+. +++|..+++ ++.++|.+
T Consensus 15 ~~~~~~~l~---~lP~~~~~~~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~----------~p~~~r~~ 77 (376)
T PRK14131 15 FAANAEQLP---DLPVPFKNGTGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAA----------FPGGPREQ 77 (376)
T ss_pred cceecccCC---CCCcCccCCeEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCc----------CCCCCccc
Confidence 345677777 89999988899999999999999643 458999987 478999887 44457788
Q ss_pred eEEEEECCEEEEEcCcCC-C----CCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCC---
Q 010115 150 HSLISWGKKVLLVGGKTD-S----GSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKR--- 220 (518)
Q Consensus 150 ~~~~~~~~~iyv~GG~~~-~----~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~--- 220 (518)
|++++++++|||+||... . ....+++|+||+.+++|+.+++ ..|.++.+|++++ .+++||++||.+...
T Consensus 78 ~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~ 155 (376)
T PRK14131 78 AVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDG 155 (376)
T ss_pred ceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHH
Confidence 999999999999999864 1 1235789999999999999874 3577888888877 899999999986320
Q ss_pred ------------------------------cccCcEEEEEcCCCcEEEeecCCCCCC-CCCCcEEEEECCcEEEEEcCCC
Q 010115 221 ------------------------------RKLNDLHMFDLKSLTWLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSS 269 (518)
Q Consensus 221 ------------------------------~~~~~~~~yd~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~~lyv~GG~~ 269 (518)
...+++++||+.+++|+.+. ++|. +|..|+++.++++ |||+||..
T Consensus 156 ~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~~~~-iYv~GG~~ 231 (376)
T PRK14131 156 YFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVIKGNK-LWLINGEI 231 (376)
T ss_pred HHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEEECCE-EEEEeeeE
Confidence 12478999999999999986 7785 7888888888888 99999974
Q ss_pred CC-CCCCcEE--EEEcCCCeEEEeecCCCCCCCCc--------ceEEEEECCEEEEEcccCCCC----------------
Q 010115 270 KS-KTLNDLY--SLDFETMIWTRIKIRGFHPSPRA--------GCCGVLCGTKWYIAGGGSRKK---------------- 322 (518)
Q Consensus 270 ~~-~~~~~v~--~yd~~~~~W~~v~~~~~~p~~r~--------~~~~~~~~~~iyv~GG~~~~~---------------- 322 (518)
.. ....+++ .||+++++|+.++.+ |.+|. ++.+++++++|||+||.+...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~W~~~~~~---p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~ 308 (376)
T PRK14131 232 KPGLRTDAVKQGKFTGNNLKWQKLPDL---PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGL 308 (376)
T ss_pred CCCcCChhheEEEecCCCcceeecCCC---CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCC
Confidence 32 2334455 457789999999877 44442 333567899999999975321
Q ss_pred -CcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCC--CCCcEEEEEcccCCcc
Q 010115 323 -RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE--PSNQVEVLSIEKNESS 392 (518)
Q Consensus 323 -~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~--~~~~v~~yd~~~~~w~ 392 (518)
....+++||+++++|+.+.. +|.+|..++++++. +.|||+||.... ..++|++|+++.+.+.
T Consensus 309 ~~~~~~e~yd~~~~~W~~~~~----lp~~r~~~~av~~~----~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 309 KKSWSDEIYALVNGKWQKVGE----LPQGLAYGVSVSWN----NGVLLIGGETAGGKAVSDVTLLSWDGKKLT 373 (376)
T ss_pred cceeehheEEecCCcccccCc----CCCCccceEEEEeC----CEEEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence 01246799999999998763 34567778777776 789999998543 4889999998876653
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.9e-35 Score=296.79 Aligned_cols=262 Identities=19% Similarity=0.332 Sum_probs=206.0
Q ss_pred CCccceEEEEECCEEEEEcCcCCCC----------CCCcEEEEE-cCC-CcEEEcccccccCCCCCCCCCCCccceEEEE
Q 010115 87 IPRFNHAAAVIGNKMIVVGGESGNG----------LLDDVQVLN-FDR-FSWTAASSKLYLSPSSLPLKIPACRGHSLIS 154 (518)
Q Consensus 87 ~~R~~~~~~~~~~~lyv~GG~~~~~----------~~~~v~~yd-~~~-~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 154 (518)
..+.++.++++++.|||+||.+... ..+++++|+ +.. .+|..+++ +|. +|..+++++
T Consensus 2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~----------lp~-~r~~~~~~~ 70 (323)
T TIGR03548 2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQ----------LPY-EAAYGASVS 70 (323)
T ss_pred CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEccc----------CCc-cccceEEEE
Confidence 4578899999999999999975432 346888886 332 37999887 444 455677788
Q ss_pred ECCEEEEEcCcCCCCCCceeEEEEECCCCcE----EEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEE
Q 010115 155 WGKKVLLVGGKTDSGSDRVSVWTFDTETECW----SVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFD 230 (518)
Q Consensus 155 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W----~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd 230 (518)
++++||++||... ....+++|+||+.+++| +.++ ++|.+|..|++++++++||++||.... ..++++++||
T Consensus 71 ~~~~lyviGG~~~-~~~~~~v~~~d~~~~~w~~~~~~~~---~lp~~~~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd 145 (323)
T TIGR03548 71 VENGIYYIGGSNS-SERFSSVYRITLDESKEELICETIG---NLPFTFENGSACYKDGTLYVGGGNRNG-KPSNKSYLFN 145 (323)
T ss_pred ECCEEEEEcCCCC-CCCceeEEEEEEcCCceeeeeeEcC---CCCcCccCceEEEECCEEEEEeCcCCC-ccCceEEEEc
Confidence 8999999999864 33467999999999998 4444 599999999999999999999998643 4579999999
Q ss_pred cCCCcEEEeecCCCCC-CCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCC--CCCCCcceEEEE
Q 010115 231 LKSLTWLPLHCTGTGP-SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF--HPSPRAGCCGVL 307 (518)
Q Consensus 231 ~~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~--~p~~r~~~~~~~ 307 (518)
+.+++|++++ ++| .+|..|++++++++ |||+||.+... ..++++||+++++|+.++.+.. .|..+..+++++
T Consensus 146 ~~~~~W~~~~---~~p~~~r~~~~~~~~~~~-iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~ 220 (323)
T TIGR03548 146 LETQEWFELP---DFPGEPRVQPVCVKLQNE-LYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIK 220 (323)
T ss_pred CCCCCeeECC---CCCCCCCCcceEEEECCE-EEEEcCCCCcc-ccceEEEecCCCeeEECCCCCCCCCceeccceeEEE
Confidence 9999999997 666 47999988889988 99999986543 4678999999999999987632 234444455444
Q ss_pred -ECCEEEEEcccCCCC--------------------------------CcCeEEEEECCCCceEEeecCCCCCCCCCCCc
Q 010115 308 -CGTKWYIAGGGSRKK--------------------------------RHAETLIFDILKGEWSVAITSPSSSVTSNKGF 354 (518)
Q Consensus 308 -~~~~iyv~GG~~~~~--------------------------------~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~ 354 (518)
.+++|||+||.+... ..+++++||+.+++|+.++..| ..+|.++
T Consensus 221 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p---~~~r~~~ 297 (323)
T TIGR03548 221 INESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSP---FFARCGA 297 (323)
T ss_pred ECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccc---ccccCch
Confidence 478999999986421 1367999999999999987322 2478889
Q ss_pred eEEEEeeCCccEEEEEcCCCCC
Q 010115 355 TLVLVQHKEKDFLVAFGGIKKE 376 (518)
Q Consensus 355 s~~~~~~~~~~~l~v~GG~~~~ 376 (518)
+++.++ +.||++||....
T Consensus 298 ~~~~~~----~~iyv~GG~~~p 315 (323)
T TIGR03548 298 ALLLTG----NNIFSINGELKP 315 (323)
T ss_pred heEEEC----CEEEEEeccccC
Confidence 998886 789999998544
No 15
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.7e-35 Score=317.44 Aligned_cols=246 Identities=17% Similarity=0.279 Sum_probs=211.6
Q ss_pred CCCCeEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCC-CCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccce
Q 010115 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNG-LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGH 150 (518)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~ 150 (518)
..++|..++ +.|. +..+++++++++||++||..... ..+++++||+.+++|..++++ + .+|..|
T Consensus 272 ~~~~~~~~~---~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~----------~-~~R~~~ 336 (534)
T PHA03098 272 PLSEINTII---DIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPEL----------I-YPRKNP 336 (534)
T ss_pred hhhhccccc---Cccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCC----------C-cccccc
Confidence 677888885 4443 45578889999999999986543 467999999999999998763 3 367789
Q ss_pred EEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEE
Q 010115 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFD 230 (518)
Q Consensus 151 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd 230 (518)
++++.+++||++||... ....+++++||+.+++|+.+++ +|.+|.+|+++.++++||++||.......++++++||
T Consensus 337 ~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~---lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd 412 (534)
T PHA03098 337 GVTVFNNRIYVIGGIYN-SISLNTVESWKPGESKWREEPP---LIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFS 412 (534)
T ss_pred eEEEECCEEEEEeCCCC-CEecceEEEEcCCCCceeeCCC---cCcCCccceEEEECCEEEEECCcCCCCcccceEEEEe
Confidence 99999999999999863 3456789999999999999886 9999999999999999999999866555689999999
Q ss_pred cCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCC---CCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEE
Q 010115 231 LKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK---TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL 307 (518)
Q Consensus 231 ~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~---~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~ 307 (518)
+.+++|+.++ ++|.+|..|++++++++ |||+||.+... .++.+++||+++++|+.++.+ |.+|..+++++
T Consensus 413 ~~t~~W~~~~---~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~ 485 (534)
T PHA03098 413 LNTNKWSKGS---PLPISHYGGCAIYHDGK-IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSL---NFPRINASLCI 485 (534)
T ss_pred CCCCeeeecC---CCCccccCceEEEECCE-EEEECCccCCCCCcccceEEEecCCCCceeeCCCC---CcccccceEEE
Confidence 9999999987 89999999999999988 99999986432 356799999999999999766 77899999999
Q ss_pred ECCEEEEEcccCCCCCcCeEEEEECCCCceEEeecC
Q 010115 308 CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITS 343 (518)
Q Consensus 308 ~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 343 (518)
++++|||+||.......+++++||+.+++|+.+...
T Consensus 486 ~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 521 (534)
T PHA03098 486 FNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKF 521 (534)
T ss_pred ECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCC
Confidence 999999999998766678899999999999998643
No 16
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=6.1e-35 Score=296.12 Aligned_cols=264 Identities=20% Similarity=0.286 Sum_probs=201.9
Q ss_pred ccCCCCCceEeccCCCCCCcceecccccccccCCCCCCCCeEEeccCCCCC-CCccceEEEEECCEEEEEcCcCCCC---
Q 010115 36 NSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKP-IPRFNHAAAVIGNKMIVVGGESGNG--- 111 (518)
Q Consensus 36 ~~~~~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p-~~R~~~~~~~~~~~lyv~GG~~~~~--- 111 (518)
.++..+++||++||.... ..+.+++ ...+++|..++ ++| .+|.++++++++++|||+||.....
T Consensus 12 ~~~~~~~~vyv~GG~~~~-------~~~~~d~--~~~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~ 79 (346)
T TIGR03547 12 TGAIIGDKVYVGLGSAGT-------SWYKLDL--KKPSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEG 79 (346)
T ss_pred eEEEECCEEEEEccccCC-------eeEEEEC--CCCCCCceECC---CCCCCCcccceEEEECCEEEEEeCCCCCCCCC
Confidence 444568889999996321 2233322 12578899998 788 5899999999999999999975322
Q ss_pred ---CCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEE-EECCEEEEEcCcCCCC------------------
Q 010115 112 ---LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLI-SWGKKVLLVGGKTDSG------------------ 169 (518)
Q Consensus 112 ---~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~------------------ 169 (518)
.++++++||+.+++|+.++. ..+..|.+|+++ +.+++||++||.....
T Consensus 80 ~~~~~~~v~~Yd~~~~~W~~~~~----------~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 149 (346)
T TIGR03547 80 SPQVFDDVYRYDPKKNSWQKLDT----------RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPK 149 (346)
T ss_pred cceecccEEEEECCCCEEecCCC----------CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhh
Confidence 46899999999999999874 123345667766 6899999999986310
Q ss_pred ---------------CCceeEEEEECCCCcEEEeeecCCCCC-CCcceEEEEECCEEEEEcccCCCCcccCcEEEEEc--
Q 010115 170 ---------------SDRVSVWTFDTETECWSVVEAKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL-- 231 (518)
Q Consensus 170 ---------------~~~~~v~~yd~~t~~W~~~~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~-- 231 (518)
...+++++||+.+++|+.+++ ||. +|.+++++.++++|||+||.........+++.||+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~---~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~ 226 (346)
T TIGR03547 150 DKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGE---NPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTG 226 (346)
T ss_pred hhhHHHHhCCChhHcCccceEEEEECCCCceeECcc---CCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecC
Confidence 013689999999999999986 885 68999999999999999998654333456766664
Q ss_pred CCCcEEEeecCCCCCCCC-------CCcEEEEECCcEEEEEcCCCCCC-----------------CCCcEEEEEcCCCeE
Q 010115 232 KSLTWLPLHCTGTGPSPR-------SNHVAALYDDKNLLIFGGSSKSK-----------------TLNDLYSLDFETMIW 287 (518)
Q Consensus 232 ~t~~W~~~~~~g~~p~~r-------~~~~~~~~~~~~lyv~GG~~~~~-----------------~~~~v~~yd~~~~~W 287 (518)
++++|+.++ ++|.+| ..|++++++++ |||+||.+... ....+++||+++++|
T Consensus 227 ~~~~W~~~~---~m~~~r~~~~~~~~~~~a~~~~~~-Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W 302 (346)
T TIGR03547 227 GKLEWNKLP---PLPPPKSSSQEGLAGAFAGISNGV-LLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKW 302 (346)
T ss_pred CCceeeecC---CCCCCCCCccccccEEeeeEECCE-EEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcc
Confidence 677999997 676654 35557788888 99999985211 124689999999999
Q ss_pred EEeecCCCCCCCCcceEEEEECCEEEEEcccCC-CCCcCeEEEEE
Q 010115 288 TRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR-KKRHAETLIFD 331 (518)
Q Consensus 288 ~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd 331 (518)
+.+..+ |.+|..+++++++++|||+||.+. ...+++++.|-
T Consensus 303 ~~~~~l---p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 303 SKVGKL---PQGLAYGVSVSWNNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred cccCCC---CCCceeeEEEEcCCEEEEEeccCCCCCEeeeEEEEE
Confidence 999776 888998888889999999999875 35567777653
No 17
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=2.7e-34 Score=308.03 Aligned_cols=262 Identities=18% Similarity=0.212 Sum_probs=217.9
Q ss_pred EEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEEEEE
Q 010115 100 KMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFD 179 (518)
Q Consensus 100 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd 179 (518)
.+++.||.. .....+..|+...++|..++. .+.+..|++++.+++||++||........+++++||
T Consensus 252 ~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd 317 (534)
T PHA03098 252 IIYIHITMS--IFTYNYITNYSPLSEINTIID------------IHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYD 317 (534)
T ss_pred ceEeecccc--hhhceeeecchhhhhcccccC------------ccccccceEEEECCEEEEECCCcCCCCeeccEEEEe
Confidence 355556543 223445678888888988764 223445789999999999999976555667899999
Q ss_pred CCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECC
Q 010115 180 TETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 259 (518)
Q Consensus 180 ~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~ 259 (518)
+.+++|..+++ +|.+|.+|+++.++++||++||.+.. ..++++++||+.+++|+.++ ++|.+|..|+++++++
T Consensus 318 ~~~~~W~~~~~---~~~~R~~~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~ 390 (534)
T PHA03098 318 TKTKSWNKVPE---LIYPRKNPGVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNN 390 (534)
T ss_pred CCCCeeeECCC---CCcccccceEEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCC---CcCcCCccceEEEECC
Confidence 99999999876 99999999999999999999999854 56889999999999999987 8999999999999998
Q ss_pred cEEEEEcCCCC-CCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCC---CcCeEEEEECCCC
Q 010115 260 KNLLIFGGSSK-SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK---RHAETLIFDILKG 335 (518)
Q Consensus 260 ~~lyv~GG~~~-~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~v~~yd~~~~ 335 (518)
+ |||+||... ...++++++||+.+++|+.++++ |.+|.+++++.++++|||+||.+... ..+.+++||+.++
T Consensus 391 ~-iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 391 L-IYVIGGISKNDELLKTVECFSLNTNKWSKGSPL---PISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred E-EEEECCcCCCCcccceEEEEeCCCCeeeecCCC---CccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 8 999999743 34578999999999999999766 88999999999999999999976433 2567999999999
Q ss_pred ceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCC-CCcEEEEEcccCCcccc
Q 010115 336 EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMG 394 (518)
Q Consensus 336 ~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~-~~~v~~yd~~~~~w~~~ 394 (518)
+|+.++.. +.+|.+++++.++ ++||++||..... .+++++||+.+++|...
T Consensus 467 ~W~~~~~~----~~~r~~~~~~~~~----~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 518 (534)
T PHA03098 467 KWTELSSL----NFPRINASLCIFN----NKIYVVGGDKYEYYINEIEVYDDKTNTWTLF 518 (534)
T ss_pred ceeeCCCC----CcccccceEEEEC----CEEEEEcCCcCCcccceeEEEeCCCCEEEec
Confidence 99998632 3567778887775 7899999997655 78999999999999765
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.9e-34 Score=295.02 Aligned_cols=272 Identities=20% Similarity=0.260 Sum_probs=207.2
Q ss_pred ccCCCCCceEeccCCCCCCcceecccccccccCCCCCCCCeEEeccCCCCC-CCccceEEEEECCEEEEEcCcCC-----
Q 010115 36 NSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKP-IPRFNHAAAVIGNKMIVVGGESG----- 109 (518)
Q Consensus 36 ~~~~~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p-~~R~~~~~~~~~~~lyv~GG~~~----- 109 (518)
..+..+++||++||..... ...++++ ..+++|..++ ++| .+|.++++++++++|||+||...
T Consensus 33 ~~~~~~~~iyv~gG~~~~~-----~~~~d~~----~~~~~W~~l~---~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~ 100 (376)
T PRK14131 33 TGAIDNNTVYVGLGSAGTS-----WYKLDLN----APSKGWTKIA---AFPGGPREQAVAAFIDGKLYVFGGIGKTNSEG 100 (376)
T ss_pred eEEEECCEEEEEeCCCCCe-----EEEEECC----CCCCCeEECC---cCCCCCcccceEEEECCEEEEEcCCCCCCCCC
Confidence 4555578899999953321 1123331 1467899997 666 58999999999999999999764
Q ss_pred -CCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEcCcCCCC------------------
Q 010115 110 -NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSG------------------ 169 (518)
Q Consensus 110 -~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~------------------ 169 (518)
...++++++||+.+++|+.++. ..+..+.+|++++ .+++||++||.....
T Consensus 101 ~~~~~~~v~~YD~~~n~W~~~~~----------~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~ 170 (376)
T PRK14131 101 SPQVFDDVYKYDPKTNSWQKLDT----------RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPK 170 (376)
T ss_pred ceeEcccEEEEeCCCCEEEeCCC----------CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhh
Confidence 1236899999999999999975 2233456777776 799999999985310
Q ss_pred ---------------CCceeEEEEECCCCcEEEeeecCCCCC-CCcceEEEEECCEEEEEcccCCCCcccCcEE--EEEc
Q 010115 170 ---------------SDRVSVWTFDTETECWSVVEAKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLH--MFDL 231 (518)
Q Consensus 170 ---------------~~~~~v~~yd~~t~~W~~~~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~--~yd~ 231 (518)
...+++++||+.+++|+.+.+ +|. +|.+|+++.++++|||+||....+....+++ .||+
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~---~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~ 247 (376)
T PRK14131 171 DKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGE---SPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTG 247 (376)
T ss_pred hhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCc---CCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecC
Confidence 024689999999999999876 885 7889999999999999999865433345555 4567
Q ss_pred CCCcEEEeecCCCCCCCCCC--------cEEEEECCcEEEEEcCCCCCC-----------------CCCcEEEEEcCCCe
Q 010115 232 KSLTWLPLHCTGTGPSPRSN--------HVAALYDDKNLLIFGGSSKSK-----------------TLNDLYSLDFETMI 286 (518)
Q Consensus 232 ~t~~W~~~~~~g~~p~~r~~--------~~~~~~~~~~lyv~GG~~~~~-----------------~~~~v~~yd~~~~~ 286 (518)
++++|+.++ .+|.+|.. +.+++++++ |||+||.+... ....+++||+++++
T Consensus 248 ~~~~W~~~~---~~p~~~~~~~~~~~~~~~a~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~ 323 (376)
T PRK14131 248 NNLKWQKLP---DLPPAPGGSSQEGVAGAFAGYSNGV-LLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGK 323 (376)
T ss_pred CCcceeecC---CCCCCCcCCcCCccceEeceeECCE-EEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCc
Confidence 899999997 67776642 235667887 99999975311 01246799999999
Q ss_pred EEEeecCCCCCCCCcceEEEEECCEEEEEcccCC-CCCcCeEEEEECCCCceEE
Q 010115 287 WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR-KKRHAETLIFDILKGEWSV 339 (518)
Q Consensus 287 W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~~~~W~~ 339 (518)
|+.+..+ |.+|..+++++++++|||+||... ....+++++|+++.+.++.
T Consensus 324 W~~~~~l---p~~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 324 WQKVGEL---PQGLAYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred ccccCcC---CCCccceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 9999766 889999999999999999999864 3567899999999888765
No 19
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=3.1e-34 Score=288.01 Aligned_cols=261 Identities=16% Similarity=0.200 Sum_probs=201.4
Q ss_pred ccCCCCCceEeccCCCCC-------CcceecccccccccCCCCCCCCeEEeccCCCCCCCccceEEEEECCEEEEEcCcC
Q 010115 36 NSNPNSECVAPSSNHADD-------RDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGES 108 (518)
Q Consensus 36 ~~~~~~~~i~~~GG~~~~-------~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~R~~~~~~~~~~~lyv~GG~~ 108 (518)
.+...++.||++||.... ....+..++|.++. ...+.+|..++ ++|.+|..+++++++++||++||..
T Consensus 8 ~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~--~~~~~~W~~~~---~lp~~r~~~~~~~~~~~lyviGG~~ 82 (323)
T TIGR03548 8 YAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKD--ENSNLKWVKDG---QLPYEAAYGASVSVENGIYYIGGSN 82 (323)
T ss_pred eeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEec--CCCceeEEEcc---cCCccccceEEEEECCEEEEEcCCC
Confidence 444567889999995332 12234455564431 01234799987 8899998888899999999999988
Q ss_pred CCCCCCcEEEEEcCCCcE----EEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCc
Q 010115 109 GNGLLDDVQVLNFDRFSW----TAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC 184 (518)
Q Consensus 109 ~~~~~~~v~~yd~~~~~W----~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 184 (518)
....++++++||+.+++| +.+++ +| .+|..|++++++++|||+||... ....+++++||+.+++
T Consensus 83 ~~~~~~~v~~~d~~~~~w~~~~~~~~~----------lp-~~~~~~~~~~~~~~iYv~GG~~~-~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 83 SSERFSSVYRITLDESKEELICETIGN----------LP-FTFENGSACYKDGTLYVGGGNRN-GKPSNKSYLFNLETQE 150 (323)
T ss_pred CCCCceeEEEEEEcCCceeeeeeEcCC----------CC-cCccCceEEEECCEEEEEeCcCC-CccCceEEEEcCCCCC
Confidence 777789999999999998 45544 33 35567999999999999999753 3446899999999999
Q ss_pred EEEeeecCCCC-CCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCC--CCCCCCCCcEEEEECCcE
Q 010115 185 WSVVEAKGDIP-VARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTG--TGPSPRSNHVAALYDDKN 261 (518)
Q Consensus 185 W~~~~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g--~~p~~r~~~~~~~~~~~~ 261 (518)
|+.+++ +| .+|..|++++++++|||+||.+.. ...++++||+++++|+.++... ..|.++..++++++.+..
T Consensus 151 W~~~~~---~p~~~r~~~~~~~~~~~iYv~GG~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~ 225 (323)
T TIGR03548 151 WFELPD---FPGEPRVQPVCVKLQNELYVFGGGSNI--AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESL 225 (323)
T ss_pred eeECCC---CCCCCCCcceEEEECCEEEEEcCCCCc--cccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCE
Confidence 999885 76 479999999999999999998754 3467899999999999997432 244455556655555444
Q ss_pred EEEEcCCCCCC--------------------------------CCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEEC
Q 010115 262 LLIFGGSSKSK--------------------------------TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCG 309 (518)
Q Consensus 262 lyv~GG~~~~~--------------------------------~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~ 309 (518)
|||+||.+... +.+++++||+.+++|+.++.+ +..+|.++++++++
T Consensus 226 iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~--p~~~r~~~~~~~~~ 303 (323)
T TIGR03548 226 LLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNS--PFFARCGAALLLTG 303 (323)
T ss_pred EEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccc--cccccCchheEEEC
Confidence 99999986421 246799999999999999865 12589999999999
Q ss_pred CEEEEEcccCC
Q 010115 310 TKWYIAGGGSR 320 (518)
Q Consensus 310 ~~iyv~GG~~~ 320 (518)
++||++||...
T Consensus 304 ~~iyv~GG~~~ 314 (323)
T TIGR03548 304 NNIFSINGELK 314 (323)
T ss_pred CEEEEEecccc
Confidence 99999999754
No 20
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=7.7e-34 Score=277.56 Aligned_cols=303 Identities=26% Similarity=0.493 Sum_probs=251.0
Q ss_pred CCCCeEEecc-CCCCCCCccceEEEEECCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccce
Q 010115 72 NSENWMVLSI-AGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGH 150 (518)
Q Consensus 72 ~~~~W~~l~~-~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~ 150 (518)
.--+|+.+.. .|+.|.||.+|-++++.+-|+|||| .+.+..+.+++||..+|+|..-+..+ .-+|++..|
T Consensus 15 ~~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGG-GNEGiiDELHvYNTatnqWf~PavrG--------DiPpgcAA~ 85 (830)
T KOG4152|consen 15 NVVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGG-GNEGIIDELHVYNTATNQWFAPAVRG--------DIPPGCAAF 85 (830)
T ss_pred cccceEEEecccCCCCCccccchheeeeeeEEEecC-CcccchhhhhhhccccceeecchhcC--------CCCCchhhc
Confidence 4467998865 5688899999999999999999999 44567899999999999998766543 345566789
Q ss_pred EEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeec----CCCCCCCcceEEEEECCEEEEEcccCCC-------
Q 010115 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK----GDIPVARSGHTVVRASSVLILFGGEDGK------- 219 (518)
Q Consensus 151 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~----~~~p~~r~~~~~~~~~~~iyv~GG~~~~------- 219 (518)
.++..+.+||+|||+..-+...+++|.+....-.|+++.+. |..|.+|.+|+...++++.|+|||..++
T Consensus 86 GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknN 165 (830)
T KOG4152|consen 86 GFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNN 165 (830)
T ss_pred ceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccc
Confidence 99999999999999999888899988887777778887653 6789999999999999999999998432
Q ss_pred -CcccCcEEEEEcCCC----cEEEeecCCCCCCCCCCcEEEEECC-----cEEEEEcCCCCCCCCCcEEEEEcCCCeEEE
Q 010115 220 -RRKLNDLHMFDLKSL----TWLPLHCTGTGPSPRSNHVAALYDD-----KNLLIFGGSSKSKTLNDLYSLDFETMIWTR 289 (518)
Q Consensus 220 -~~~~~~~~~yd~~t~----~W~~~~~~g~~p~~r~~~~~~~~~~-----~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 289 (518)
.++++|+|++++.-. .|......|.+|.+|..|+++++.. .++||+||.++- .+.|+|.+|+++..|.+
T Consensus 166 vPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~Tl~W~k 244 (830)
T KOG4152|consen 166 VPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDTLTWNK 244 (830)
T ss_pred cchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc-cccceeEEecceeeccc
Confidence 247999999998743 5999888899999999999999832 259999998763 57899999999999999
Q ss_pred eecCCCCCCCCcceEEEEECCEEEEEcccCC------C--------CCcCeEEEEECCCCceEEeecC---CCCCCCCCC
Q 010115 290 IKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR------K--------KRHAETLIFDILKGEWSVAITS---PSSSVTSNK 352 (518)
Q Consensus 290 v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~------~--------~~~~~v~~yd~~~~~W~~~~~~---~~~~~~~r~ 352 (518)
....|-.|.||.-|+++.+++++|||||.-- . +..+.+-++|+++..|..+-.. ....|++|+
T Consensus 245 p~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RA 324 (830)
T KOG4152|consen 245 PSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARA 324 (830)
T ss_pred ccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccc
Confidence 9999999999999999999999999999531 0 1345677999999999987432 223679999
Q ss_pred CceEEEEeeCCccEEEEEcCCCCCC--------CCcEEEEEccc
Q 010115 353 GFTLVLVQHKEKDFLVAFGGIKKEP--------SNQVEVLSIEK 388 (518)
Q Consensus 353 ~~s~~~~~~~~~~~l~v~GG~~~~~--------~~~v~~yd~~~ 388 (518)
||++++++ .+||+..|+++-. ..|+|.+|.+.
T Consensus 325 GHCAvAig----tRlYiWSGRDGYrKAwnnQVCCkDlWyLdTek 364 (830)
T KOG4152|consen 325 GHCAVAIG----TRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEK 364 (830)
T ss_pred cceeEEec----cEEEEEeccchhhHhhccccchhhhhhhcccC
Confidence 99999998 7899999997643 45666666543
No 21
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=8.6e-33 Score=290.66 Aligned_cols=211 Identities=16% Similarity=0.235 Sum_probs=186.9
Q ss_pred EEEECCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCce
Q 010115 94 AAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRV 173 (518)
Q Consensus 94 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 173 (518)
++..++.||++||.......+++++||+.+++|..++++ + .+|..+++++.+++||++||... .+
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m----------~-~~r~~~~~v~~~~~iYviGG~~~----~~ 331 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPM----------N-SPRLYASGVPANNKLYVVGGLPN----PT 331 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCC----------C-chhhcceEEEECCEEEEECCcCC----CC
Confidence 345899999999987666778999999999999999983 3 35667888999999999999853 24
Q ss_pred eEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcE
Q 010115 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (518)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~ 253 (518)
++++||+.+++|+.+++ ||.+|.+|++++++++||++||.+.. .+.+++||+.+++|+.++ ++|.+|..|+
T Consensus 332 sve~ydp~~n~W~~~~~---l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~---~m~~~r~~~~ 402 (480)
T PHA02790 332 SVERWFHGDAAWVNMPS---LLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGP---STYYPHYKSC 402 (480)
T ss_pred ceEEEECCCCeEEECCC---CCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCC---CCCCccccce
Confidence 68999999999999987 99999999999999999999998643 367999999999999997 8999999999
Q ss_pred EEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECC
Q 010115 254 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 333 (518)
Q Consensus 254 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 333 (518)
+++++++ |||+||. +++||+++++|+.++++ |.+|..+++++++++||++||.+.....+.+++||+.
T Consensus 403 ~~~~~~~-IYv~GG~--------~e~ydp~~~~W~~~~~m---~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 403 ALVFGRR-LFLVGRN--------AEFYCESSNTWTLIDDP---IYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred EEEECCE-EEEECCc--------eEEecCCCCcEeEcCCC---CCCccccEEEEECCEEEEECCcCCCcccceEEEEECC
Confidence 9999998 9999983 68899999999999876 8899999999999999999998765556789999999
Q ss_pred CCceEEe
Q 010115 334 KGEWSVA 340 (518)
Q Consensus 334 ~~~W~~~ 340 (518)
+++|+..
T Consensus 471 ~~~W~~~ 477 (480)
T PHA02790 471 TYSWNIW 477 (480)
T ss_pred CCeEEec
Confidence 9999864
No 22
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=6.4e-33 Score=290.12 Aligned_cols=246 Identities=33% Similarity=0.539 Sum_probs=222.5
Q ss_pred CCCCccceEEEEECCEEEEEcCcCCCCCCce-eEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCc
Q 010115 143 KIPACRGHSLISWGKKVLLVGGKTDSGSDRV-SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRR 221 (518)
Q Consensus 143 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~-~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 221 (518)
.+.+|.+|+++.+++++|||||......... ++|++|..+..|......+..|.+|++|+++.++++||+|||.+....
T Consensus 57 ~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~ 136 (482)
T KOG0379|consen 57 GPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYR 136 (482)
T ss_pred CcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCC
Confidence 4667899999999999999999976554433 699999999999999999999999999999999999999999997556
Q ss_pred ccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCC-CCCcEEEEEcCCCeEEEeecCCCCCCCC
Q 010115 222 KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSLDFETMIWTRIKIRGFHPSPR 300 (518)
Q Consensus 222 ~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~v~~~~~~p~~r 300 (518)
.+++++.||+.+.+|+.+...+..|.+|.+|++++++++ ||||||.+... ..|++|+||+++.+|+++...+..|.||
T Consensus 137 ~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~-l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR 215 (482)
T KOG0379|consen 137 NLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTK-LVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPR 215 (482)
T ss_pred ChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCE-EEEECCccCcccceeeeeeeccccccceecccCCCCCCCC
Confidence 789999999999999999999899999999999999977 99999998766 8999999999999999999999999999
Q ss_pred cceEEEEECCEEEEEcccC-CCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCC---
Q 010115 301 AGCCGVLCGTKWYIAGGGS-RKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE--- 376 (518)
Q Consensus 301 ~~~~~~~~~~~iyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~--- 376 (518)
.+|++++++++++|+||.. ....++|+|.||+.+.+|..+.. ....|.+|.+|+++... .+++++||....
T Consensus 216 ~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~-~g~~p~~R~~h~~~~~~----~~~~l~gG~~~~~~~ 290 (482)
T KOG0379|consen 216 YGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPT-GGDLPSPRSGHSLTVSG----DHLLLFGGGTDPKQE 290 (482)
T ss_pred CCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccc-cCCCCCCcceeeeEEEC----CEEEEEcCCcccccc
Confidence 9999999999999999988 67789999999999999996554 45668899999999665 789999998763
Q ss_pred CCCcEEEEEcccCCcccc
Q 010115 377 PSNQVEVLSIEKNESSMG 394 (518)
Q Consensus 377 ~~~~v~~yd~~~~~w~~~ 394 (518)
...++|.|++++..|...
T Consensus 291 ~l~~~~~l~~~~~~w~~~ 308 (482)
T KOG0379|consen 291 PLGDLYGLDLETLVWSKV 308 (482)
T ss_pred cccccccccccccceeee
Confidence 689999999999988663
No 23
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=3.5e-33 Score=267.35 Aligned_cols=247 Identities=30% Similarity=0.518 Sum_probs=211.9
Q ss_pred CCCCCccceEEEEE--CCEEEEEcCcCCC----CCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEEC-
Q 010115 84 DKPIPRFNHAAAVI--GNKMIVVGGESGN----GLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG- 156 (518)
Q Consensus 84 ~~p~~R~~~~~~~~--~~~lyv~GG~~~~----~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~- 156 (518)
++|.||.+.++++. .+.|++|||.--+ ...|++|.||..+++|+++... ..+|+|..|.+|++-
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~sp---------n~P~pRsshq~va~~s 132 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSP---------NAPPPRSSHQAVAVPS 132 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccC---------CCcCCCccceeEEecc
Confidence 67889999998876 4679999996322 2479999999999999999763 467788899998885
Q ss_pred CEEEEEcCcCCCCC-----CceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCC---CcccCcEEE
Q 010115 157 KKVLLVGGKTDSGS-----DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK---RRKLNDLHM 228 (518)
Q Consensus 157 ~~iyv~GG~~~~~~-----~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~ 228 (518)
+.+|+|||.-.... ...++|.||+.+++|+++...+ .|.+|++|-|++.+.+|++|||+... ..++||+|+
T Consensus 133 ~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~ 211 (521)
T KOG1230|consen 133 NILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYA 211 (521)
T ss_pred CeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEE
Confidence 89999999764322 2568999999999999999766 79999999999999999999998543 347899999
Q ss_pred EEcCCCcEEEeecCCCCCCCCCCcEEEEE-CCcEEEEEcCCCC---------CCCCCcEEEEEcCC-----CeEEEeecC
Q 010115 229 FDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSK---------SKTLNDLYSLDFET-----MIWTRIKIR 293 (518)
Q Consensus 229 yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~---------~~~~~~v~~yd~~~-----~~W~~v~~~ 293 (518)
||+.+-+|+++.+.|..|.||.+|++.+. ++. |||+||++. ....+|+|.++++. ..|.++.+.
T Consensus 212 FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~-i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~ 290 (521)
T KOG1230|consen 212 FDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGG-IVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPS 290 (521)
T ss_pred EeccceeeeeccCCCCCCCCCCcceEEecCCCc-EEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCC
Confidence 99999999999998889999999999998 566 999999953 35678999999988 789999999
Q ss_pred CCCCCCCcceEEEEE-CCEEEEEcccCC---------CCCcCeEEEEECCCCceEEee
Q 010115 294 GFHPSPRAGCCGVLC-GTKWYIAGGGSR---------KKRHAETLIFDILKGEWSVAI 341 (518)
Q Consensus 294 ~~~p~~r~~~~~~~~-~~~iyv~GG~~~---------~~~~~~v~~yd~~~~~W~~~~ 341 (518)
|..|.||.++++++. +++-|.|||..+ ....+++|.||++.++|....
T Consensus 291 g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~q 348 (521)
T KOG1230|consen 291 GVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQ 348 (521)
T ss_pred CCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhh
Confidence 999999999998887 669999999865 125689999999999998764
No 24
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=3.2e-31 Score=278.79 Aligned_cols=209 Identities=16% Similarity=0.274 Sum_probs=182.7
Q ss_pred EEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEc
Q 010115 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL 231 (518)
Q Consensus 152 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~ 231 (518)
.+..++.||++||... ....+++++||+.+++|..+++ ||.+|..++++.++++||++||.+.. +++++||+
T Consensus 267 ~~~~~~~lyviGG~~~-~~~~~~v~~Ydp~~~~W~~~~~---m~~~r~~~~~v~~~~~iYviGG~~~~----~sve~ydp 338 (480)
T PHA02790 267 STHVGEVVYLIGGWMN-NEIHNNAIAVNYISNNWIPIPP---MNSPRLYASGVPANNKLYVVGGLPNP----TSVERWFH 338 (480)
T ss_pred eEEECCEEEEEcCCCC-CCcCCeEEEEECCCCEEEECCC---CCchhhcceEEEECCEEEEECCcCCC----CceEEEEC
Confidence 3458999999999854 3345689999999999999997 99999999999999999999998632 56999999
Q ss_pred CCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCE
Q 010115 232 KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTK 311 (518)
Q Consensus 232 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~ 311 (518)
.+++|+.++ ++|.+|..|++++++++ ||++||.... .+.+++|||++++|+.++++ |.+|..+++++++++
T Consensus 339 ~~n~W~~~~---~l~~~r~~~~~~~~~g~-IYviGG~~~~--~~~ve~ydp~~~~W~~~~~m---~~~r~~~~~~~~~~~ 409 (480)
T PHA02790 339 GDAAWVNMP---SLLKPRCNPAVASINNV-IYVIGGHSET--DTTTEYLLPNHDQWQFGPST---YYPHYKSCALVFGRR 409 (480)
T ss_pred CCCeEEECC---CCCCCCcccEEEEECCE-EEEecCcCCC--CccEEEEeCCCCEEEeCCCC---CCccccceEEEECCE
Confidence 999999997 89999999999999999 9999998643 36799999999999999877 889999999999999
Q ss_pred EEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCC-CCcEEEEEcccCC
Q 010115 312 WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNE 390 (518)
Q Consensus 312 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~-~~~v~~yd~~~~~ 390 (518)
|||+||. +.+||+.+++|+.++. ++.+|.++++++++ ++||++||.++.. .+.+++||+++++
T Consensus 410 IYv~GG~--------~e~ydp~~~~W~~~~~----m~~~r~~~~~~v~~----~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 410 LFLVGRN--------AEFYCESSNTWTLIDD----PIYPRDNPELIIVD----NKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred EEEECCc--------eEEecCCCCcEeEcCC----CCCCccccEEEEEC----CEEEEECCcCCCcccceEEEEECCCCe
Confidence 9999983 5789999999999863 34678889998886 7899999986443 6789999999999
Q ss_pred ccc
Q 010115 391 SSM 393 (518)
Q Consensus 391 w~~ 393 (518)
|+.
T Consensus 474 W~~ 476 (480)
T PHA02790 474 WNI 476 (480)
T ss_pred EEe
Confidence 975
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=1.7e-31 Score=255.81 Aligned_cols=238 Identities=23% Similarity=0.436 Sum_probs=200.0
Q ss_pred CCceEeccC-CCCCCcceecccccccccCCCCCCCCeEEeccCCCCCCCccceEEEEEC-CEEEEEcCcCCC------CC
Q 010115 41 SECVAPSSN-HADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIG-NKMIVVGGESGN------GL 112 (518)
Q Consensus 41 ~~~i~~~GG-~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~R~~~~~~~~~-~~lyv~GG~~~~------~~ 112 (518)
.+-+++||| ..++......++.|..+. .+++|+.+.. ...|+||+.|+++++. |.+|+|||.-.. ..
T Consensus 78 keELilfGGEf~ngqkT~vYndLy~Yn~----k~~eWkk~~s-pn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~H 152 (521)
T KOG1230|consen 78 KEELILFGGEFYNGQKTHVYNDLYSYNT----KKNEWKKVVS-PNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHH 152 (521)
T ss_pred cceeEEecceeecceeEEEeeeeeEEec----cccceeEecc-CCCcCCCccceeEEeccCeEEEeccccCCcchhhhhh
Confidence 345999999 334445555666677666 9999999964 3678899999999986 899999996321 13
Q ss_pred CCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCC---CceeEEEEECCCCcEEEee
Q 010115 113 LDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGS---DRVSVWTFDTETECWSVVE 189 (518)
Q Consensus 113 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~---~~~~v~~yd~~t~~W~~~~ 189 (518)
..|+|+||+.+++|+++... ..+.+|.+|-++++.++|++|||+.+... ..||||+||+.|-+|+++.
T Consensus 153 YkD~W~fd~~trkweql~~~---------g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Kle 223 (521)
T KOG1230|consen 153 YKDLWLFDLKTRKWEQLEFG---------GGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLE 223 (521)
T ss_pred hhheeeeeeccchheeeccC---------CCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeecc
Confidence 68999999999999999875 34568899999999999999999977543 3789999999999999999
Q ss_pred ecCCCCCCCcceEEEEE-CCEEEEEcccCC--------CCcccCcEEEEEcCC-----CcEEEeecCCCCCCCCCCcEEE
Q 010115 190 AKGDIPVARSGHTVVRA-SSVLILFGGEDG--------KRRKLNDLHMFDLKS-----LTWLPLHCTGTGPSPRSNHVAA 255 (518)
Q Consensus 190 ~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~--------~~~~~~~~~~yd~~t-----~~W~~~~~~g~~p~~r~~~~~~ 255 (518)
+.+..|.+|++|++++. .+.|||+||+.. .+...+|+|.+++.. ..|+++.+.|.-|.||.+++++
T Consensus 224 psga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~ 303 (521)
T KOG1230|consen 224 PSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVA 303 (521)
T ss_pred CCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEE
Confidence 98888999999999998 899999999953 345689999999988 6899999999999999999999
Q ss_pred EECCcEEEEEcCCCC---------CCCCCcEEEEEcCCCeEEEeec
Q 010115 256 LYDDKNLLIFGGSSK---------SKTLNDLYSLDFETMIWTRIKI 292 (518)
Q Consensus 256 ~~~~~~lyv~GG~~~---------~~~~~~v~~yd~~~~~W~~v~~ 292 (518)
+..+..-|.|||... ..++||+|.||+..++|.....
T Consensus 304 va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ql 349 (521)
T KOG1230|consen 304 VAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQL 349 (521)
T ss_pred EecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhhh
Confidence 998865899999742 4588999999999999987654
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=8.1e-31 Score=256.48 Aligned_cols=286 Identities=24% Similarity=0.397 Sum_probs=232.2
Q ss_pred CCCccCCCCCceEeccCCCCCCcceecccccccccCCCCCCCCeEEeccCCCCCCCccceEEEEECCEEEEEcCcCCC-C
Q 010115 33 PKRNSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGN-G 111 (518)
Q Consensus 33 ~~r~~~~~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~-~ 111 (518)
..|.++...|.|++|||..+++ .+--+.|...+++|..-++-|+.|++-..|+++..+.+||+|||..+- .
T Consensus 34 HGHRAVaikELiviFGGGNEGi--------iDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGk 105 (830)
T KOG4152|consen 34 HGHRAVAIKELIVIFGGGNEGI--------IDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGK 105 (830)
T ss_pred ccchheeeeeeEEEecCCcccc--------hhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeecc
Confidence 5558888899999999977776 222233344999999999999999998899999999999999997654 4
Q ss_pred CCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCC--------CceeEEEEECCCC
Q 010115 112 LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGS--------DRVSVWTFDTETE 183 (518)
Q Consensus 112 ~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~--------~~~~v~~yd~~t~ 183 (518)
.+||+|-+....=.|+++.+..... ..++.+|.+|+....+++.|+|||...... .++|+|++++.-+
T Consensus 106 YsNdLYELQasRWeWkrlkp~~p~n----G~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~G 181 (830)
T KOG4152|consen 106 YSNDLYELQASRWEWKRLKPKTPKN----GPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPG 181 (830)
T ss_pred ccchHHHhhhhhhhHhhcCCCCCCC----CCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccC
Confidence 5788877766666788887742211 145668899999999999999999864222 3678999988744
Q ss_pred ----cEEEeeecCCCCCCCcceEEEEE------CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcE
Q 010115 184 ----CWSVVEAKGDIPVARSGHTVVRA------SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (518)
Q Consensus 184 ----~W~~~~~~~~~p~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~ 253 (518)
.|......|.+|.+|..|+++++ ..++||+||..+- .+.|+|.+|+++.+|.+....|-.|.||..|+
T Consensus 182 sgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~--RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHs 259 (830)
T KOG4152|consen 182 SGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC--RLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHS 259 (830)
T ss_pred CceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc--cccceeEEecceeecccccccCCCCCCccccc
Confidence 39998888999999999999987 2489999999875 58999999999999999999999999999999
Q ss_pred EEEECCcEEEEEcCCCC--------------CCCCCcEEEEEcCCCeEEEeecC----CCCCCCCcceEEEEECCEEEEE
Q 010115 254 AALYDDKNLLIFGGSSK--------------SKTLNDLYSLDFETMIWTRIKIR----GFHPSPRAGCCGVLCGTKWYIA 315 (518)
Q Consensus 254 ~~~~~~~~lyv~GG~~~--------------~~~~~~v~~yd~~~~~W~~v~~~----~~~p~~r~~~~~~~~~~~iyv~ 315 (518)
+++++++ +|||||... -.+.+.+-++|++++.|..+-.. ...|.+|.+|++++++.++||.
T Consensus 260 a~~IGnK-MyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiW 338 (830)
T KOG4152|consen 260 ATTIGNK-MYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIW 338 (830)
T ss_pred ceeecce-eEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEE
Confidence 9999999 999999731 13567888999999999987541 2268999999999999999999
Q ss_pred cccCC-------CCCcCeEEEEECC
Q 010115 316 GGGSR-------KKRHAETLIFDIL 333 (518)
Q Consensus 316 GG~~~-------~~~~~~v~~yd~~ 333 (518)
.|+++ +....|+|.+|.+
T Consensus 339 SGRDGYrKAwnnQVCCkDlWyLdTe 363 (830)
T KOG4152|consen 339 SGRDGYRKAWNNQVCCKDLWYLDTE 363 (830)
T ss_pred eccchhhHhhccccchhhhhhhccc
Confidence 99875 2345677777754
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.81 E-value=3.9e-18 Score=162.53 Aligned_cols=264 Identities=21% Similarity=0.294 Sum_probs=188.7
Q ss_pred ccCCCCCceEeccCCCCCCcceecccccccccCCCCCCCCeEEeccCCCCC-CCccceEEEEECCEEEEEcCcCCC----
Q 010115 36 NSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKP-IPRFNHAAAVIGNKMIVVGGESGN---- 110 (518)
Q Consensus 36 ~~~~~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p-~~R~~~~~~~~~~~lyv~GG~~~~---- 110 (518)
+....++.+|+.=|..-.- .|.+++. -....|+.++ +.| .+|.+..+++++++||+|||....
T Consensus 41 ~Ga~ig~~~YVGLGs~G~a-------fy~ldL~--~~~k~W~~~a---~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~ 108 (381)
T COG3055 41 AGALIGDTVYVGLGSAGTA-------FYVLDLK--KPGKGWTKIA---DFPGGARNQAVAAVIGGKLYVFGGYGKSVSSS 108 (381)
T ss_pred ccceecceEEEEeccCCcc-------ceehhhh--cCCCCceEcc---cCCCcccccchheeeCCeEEEeeccccCCCCC
Confidence 4444566777665522121 1444332 1558999998 666 679999999999999999996433
Q ss_pred -CCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECC-EEEEEcCcCCC--------------------
Q 010115 111 -GLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGK-KVLLVGGKTDS-------------------- 168 (518)
Q Consensus 111 -~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~-------------------- 168 (518)
...+|+|+|||.+|+|+++... .+....+++++.+++ +||++||.+..
T Consensus 109 ~~~~nd~Y~y~p~~nsW~kl~t~----------sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~ 178 (381)
T COG3055 109 PQVFNDAYRYDPSTNSWHKLDTR----------SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVD 178 (381)
T ss_pred ceEeeeeEEecCCCChhheeccc----------cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHH
Confidence 3478999999999999999873 333456888888877 99999998621
Q ss_pred -------------CCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcC--C
Q 010115 169 -------------GSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLK--S 233 (518)
Q Consensus 169 -------------~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~--t 233 (518)
......|+.|+|.+++|+.+-. ..-.++++++.+.-++++.++-|.-..+-.+..+++++.. .
T Consensus 179 ~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~--~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~ 256 (381)
T COG3055 179 KIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE--NPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDN 256 (381)
T ss_pred HHHHHHhCCCHHHhcccccccccccccchhhhcCc--CcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCc
Confidence 0012358999999999998764 2345677766666678899999998777667778888876 4
Q ss_pred CcEEEeecCCCCCCC-------CCCcEEEEECCcEEEEEcCCCC-------------------CCCCCcEEEEEcCCCeE
Q 010115 234 LTWLPLHCTGTGPSP-------RSNHVAALYDDKNLLIFGGSSK-------------------SKTLNDLYSLDFETMIW 287 (518)
Q Consensus 234 ~~W~~~~~~g~~p~~-------r~~~~~~~~~~~~lyv~GG~~~-------------------~~~~~~v~~yd~~~~~W 287 (518)
.+|..+. ++|.+ ..++-.-..++. ++|.||.+- ..+.++||.|| ++.|
T Consensus 257 ~~w~~l~---~lp~~~~~~~eGvAGaf~G~s~~~-~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~W 330 (381)
T COG3055 257 LKWLKLS---DLPAPIGSNKEGVAGAFSGKSNGE-VLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSW 330 (381)
T ss_pred eeeeecc---CCCCCCCCCccccceeccceeCCe-EEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCce
Confidence 5799986 33332 223333344566 888888741 23567899999 8999
Q ss_pred EEeecCCCCCCCCcceEEEEECCEEEEEcccCCC-CCcCeEEEEEC
Q 010115 288 TRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK-KRHAETLIFDI 332 (518)
Q Consensus 288 ~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~ 332 (518)
+.+ +++|.++++..++..+++||++||.+.. +...+++.+-.
T Consensus 331 k~~---GeLp~~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~l~~ 373 (381)
T COG3055 331 KIV---GELPQGLAYGVSLSYNNKVLLIGGETSGGKATTRVYSLSW 373 (381)
T ss_pred eee---cccCCCccceEEEecCCcEEEEccccCCCeeeeeEEEEEE
Confidence 999 4558899888888899999999998753 44555555443
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.78 E-value=6e-17 Score=154.51 Aligned_cols=273 Identities=21% Similarity=0.346 Sum_probs=192.1
Q ss_pred CCCCCccceEEEEECCEEEEEcCcCCCCCCCcEEEEEcCC--CcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEE
Q 010115 84 DKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDR--FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLL 161 (518)
Q Consensus 84 ~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv 161 (518)
+.|.+-.+.+.+.+++.+||-=|..+ ...+.+|+.. ..|+++.. .|..+|.+..+++++++||+
T Consensus 32 dlPvg~KnG~Ga~ig~~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~----------FpG~~rnqa~~a~~~~kLyv 97 (381)
T COG3055 32 DLPVGFKNGAGALIGDTVYVGLGSAG----TAFYVLDLKKPGKGWTKIAD----------FPGGARNQAVAAVIGGKLYV 97 (381)
T ss_pred CCCccccccccceecceEEEEeccCC----ccceehhhhcCCCCceEccc----------CCCcccccchheeeCCeEEE
Confidence 67777777788889999999655332 4567888775 58999998 78889999999999999999
Q ss_pred EcCcCCCCC----CceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECC-EEEEEcccCCC-----------------
Q 010115 162 VGGKTDSGS----DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGK----------------- 219 (518)
Q Consensus 162 ~GG~~~~~~----~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~----------------- 219 (518)
|||...... ..+++|+||+.+++|.++.. ..|....+++++.+++ +||++||.+..
T Consensus 98 FgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~ 175 (381)
T COG3055 98 FGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKE 175 (381)
T ss_pred eeccccCCCCCceEeeeeEEecCCCChhheecc--ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHH
Confidence 999865433 36799999999999999986 5677788888888887 99999998521
Q ss_pred ----------------CcccCcEEEEEcCCCcEEEeecCCCCCC-CCCCcEEEEECCcEEEEEcCCCC-CCCCCcEEEEE
Q 010115 220 ----------------RRKLNDLHMFDLKSLTWLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSSK-SKTLNDLYSLD 281 (518)
Q Consensus 220 ----------------~~~~~~~~~yd~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd 281 (518)
......++.||+.+++|+.+. ..|. ++++ +++++.+..+.++-|.-. ......+++++
T Consensus 176 ~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G---~~pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~k~~~ 251 (381)
T COG3055 176 AVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLG---ENPFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEVKQAD 251 (381)
T ss_pred HHHHHHHHHhCCCHHHhcccccccccccccchhhhcC---cCcccCccC-cceeecCCeEEEEcceecCCccccceeEEE
Confidence 113567899999999999985 4554 4555 445555543666666533 34456677777
Q ss_pred cC--CCeEEEeecCCCCCCC-CcceE---EEEECCEEEEEcccCC-------------------CCCcCeEEEEECCCCc
Q 010115 282 FE--TMIWTRIKIRGFHPSP-RAGCC---GVLCGTKWYIAGGGSR-------------------KKRHAETLIFDILKGE 336 (518)
Q Consensus 282 ~~--~~~W~~v~~~~~~p~~-r~~~~---~~~~~~~iyv~GG~~~-------------------~~~~~~v~~yd~~~~~ 336 (518)
.. ..+|..+...+.+... ..+.+ .-..++.+.+.||..- .....+||.|| .+.
T Consensus 252 ~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~ 329 (381)
T COG3055 252 FGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGS 329 (381)
T ss_pred eccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCc
Confidence 74 5689999765322111 12222 2234788889888542 12456889998 899
Q ss_pred eEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCC--CCcEEEEEc
Q 010115 337 WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP--SNQVEVLSI 386 (518)
Q Consensus 337 W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~--~~~v~~yd~ 386 (518)
|+.+...|. + .++++.+.. .+.+|++||..... ...|..+-.
T Consensus 330 Wk~~GeLp~----~-l~YG~s~~~---nn~vl~IGGE~~~Gka~~~v~~l~~ 373 (381)
T COG3055 330 WKIVGELPQ----G-LAYGVSLSY---NNKVLLIGGETSGGKATTRVYSLSW 373 (381)
T ss_pred eeeecccCC----C-ccceEEEec---CCcEEEEccccCCCeeeeeEEEEEE
Confidence 999875543 2 233433333 36699999997654 555554443
No 29
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.69 E-value=3.4e-17 Score=161.12 Aligned_cols=269 Identities=22% Similarity=0.333 Sum_probs=192.7
Q ss_pred CCcEEEcccccccCCCCCCCCCCCccceEEEEECC--EEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcc
Q 010115 123 RFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGK--KVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG 200 (518)
Q Consensus 123 ~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~ 200 (518)
+-.|.+++.......... ..+..|.+|.+|...+ .||++||+++ -....|+|.|+...+.|+.+...+..|..|.+
T Consensus 238 ~~~W~~i~~~~~~~~~~~-~~p~~RgGHQMV~~~~~~CiYLYGGWdG-~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsC 315 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGED-NRPGMRGGHQMVIDVQTECVYLYGGWDG-TQDLADFWAYSVKENQWTCINRDTEGPGARSC 315 (723)
T ss_pred cccccccCchhhcccccc-cCccccCcceEEEeCCCcEEEEecCccc-chhHHHHHhhcCCcceeEEeecCCCCCcchhh
Confidence 457998877542211111 2345778999998854 8999999976 34567899999999999999877778999999
Q ss_pred eEEEEECC--EEEEEcccCCCC-----cccCcEEEEEcCCCcEEEeecC---CCCCCCCCCcEEEEECCc-EEEEEcCCC
Q 010115 201 HTVVRASS--VLILFGGEDGKR-----RKLNDLHMFDLKSLTWLPLHCT---GTGPSPRSNHVAALYDDK-NLLIFGGSS 269 (518)
Q Consensus 201 ~~~~~~~~--~iyv~GG~~~~~-----~~~~~~~~yd~~t~~W~~~~~~---g~~p~~r~~~~~~~~~~~-~lyv~GG~~ 269 (518)
|-|+.... ++|+.|-+-... ..-.|+|+||..++.|+.+... .-.|...+.|.+++.+++ ++|||||..
T Consensus 316 HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 316 HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence 99998654 999999874321 2347899999999999998542 136888999999998876 799999984
Q ss_pred C---CCCCCcEEEEEcCCCeEEEeecCCC-------CCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCce
Q 010115 270 K---SKTLNDLYSLDFETMIWTRIKIRGF-------HPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEW 337 (518)
Q Consensus 270 ~---~~~~~~v~~yd~~~~~W~~v~~~~~-------~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 337 (518)
- ...+..+|.||.....|..+...-. ....|.+|++-.+ +.++|++||......++=...||+....=
T Consensus 396 ~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E~~ 475 (723)
T KOG2437|consen 396 LTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSEHV 475 (723)
T ss_pred ccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceeccccc
Confidence 3 3457789999999999988764211 1235888887665 67899999987765555556776654433
Q ss_pred EEeec--CCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCC-------CCCcEEEEEcccCCccc
Q 010115 338 SVAIT--SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE-------PSNQVEVLSIEKNESSM 393 (518)
Q Consensus 338 ~~~~~--~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~-------~~~~v~~yd~~~~~w~~ 393 (518)
..+.. ....+..+..++..-.+.++....|.+.-|.... ..++.|+|++.+++|.-
T Consensus 476 ~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~c 540 (723)
T KOG2437|consen 476 DIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSC 540 (723)
T ss_pred hhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhh
Confidence 22221 1112223444455555555566778877776432 37899999999999854
No 30
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.67 E-value=3.8e-18 Score=167.76 Aligned_cols=295 Identities=21% Similarity=0.285 Sum_probs=201.3
Q ss_pred CCCCCeEEeccCC-------CCCCCccceEEEEECC--EEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCC
Q 010115 71 GNSENWMVLSIAG-------DKPIPRFNHAAAVIGN--KMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLP 141 (518)
Q Consensus 71 ~~~~~W~~l~~~~-------~~p~~R~~~~~~~~~~--~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~ 141 (518)
+-..+|.+++... ..|..|.+|+++...+ .||++||+++.+.+.|+|.|+...+.|..+..-.
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t-------- 307 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDT-------- 307 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCC--------
Confidence 4667898887654 5677899999998754 8999999999999999999999999999987632
Q ss_pred CCCCCccceEEEEECC--EEEEEcCcCCCCC-----CceeEEEEECCCCcEEEeeec---CCCCCCCcceEEEEECCE--
Q 010115 142 LKIPACRGHSLISWGK--KVLLVGGKTDSGS-----DRVSVWTFDTETECWSVVEAK---GDIPVARSGHTVVRASSV-- 209 (518)
Q Consensus 142 ~~~~~r~~~~~~~~~~--~iyv~GG~~~~~~-----~~~~v~~yd~~t~~W~~~~~~---~~~p~~r~~~~~~~~~~~-- 209 (518)
-.+..|..|-+|.... ++|+.|-+-+... ..+|+|+||..++.|..+.-. ..-|...+.|.|++.+++
T Consensus 308 ~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~ 387 (723)
T KOG2437|consen 308 EGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHM 387 (723)
T ss_pred CCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcce
Confidence 1344778899998754 9999998765322 256899999999999988643 236888999999999877
Q ss_pred EEEEcccCCC--CcccCcEEEEEcCCCcEEEeecC----C---CCCCCCCCcEEEEEC-CcEEEEEcCCCCCCCCCcEEE
Q 010115 210 LILFGGEDGK--RRKLNDLHMFDLKSLTWLPLHCT----G---TGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYS 279 (518)
Q Consensus 210 iyv~GG~~~~--~~~~~~~~~yd~~t~~W~~~~~~----g---~~p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~ 279 (518)
|||+||+.-. ......++.||.....|..+... + .....|.+|++-.+. +..+|++||.....-++-.+.
T Consensus 388 iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~ 467 (723)
T KOG2437|consen 388 IYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFS 467 (723)
T ss_pred EEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhc
Confidence 9999999533 23467899999999999876421 0 123467777776553 335999999877666666677
Q ss_pred EEcCCCeEEEeec-----CCCCCCCCcceEEEEE---CCEEEEEcccCCC------CCcCeEEEEECCCCceEEeecCCC
Q 010115 280 LDFETMIWTRIKI-----RGFHPSPRAGCCGVLC---GTKWYIAGGGSRK------KRHAETLIFDILKGEWSVAITSPS 345 (518)
Q Consensus 280 yd~~~~~W~~v~~-----~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~------~~~~~v~~yd~~~~~W~~~~~~~~ 345 (518)
||+....=..+.. ....|++ ....-+.. ...|.+.-|.+.. ...+..|+|++.+..|..+.....
T Consensus 468 y~I~~E~~~~~s~~~k~dsS~~pS~-~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~I~~ 546 (723)
T KOG2437|consen 468 YDIDSEHVDIISDGTKKDSSMVPST-GFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYKIDQ 546 (723)
T ss_pred ceeccccchhhhccCcCccccCCCc-chhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHhhhHH
Confidence 7664332222211 0011221 11111122 4567777776531 245678999999999977643111
Q ss_pred --------------------CCCCCCCCceEEEEeeCCccEEEEEcCCCCC
Q 010115 346 --------------------SSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE 376 (518)
Q Consensus 346 --------------------~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~ 376 (518)
..+.+|.+|+.++.- .+..+|.+||..+.
T Consensus 547 ~~~d~dtvfsvpFp~ks~~~~~~~~rf~h~~~~dL--~~~~~yl~Ggn~~~ 595 (723)
T KOG2437|consen 547 AAKDNDTVFSVPFPTKSLQEEEPCPRFAHQLVYDL--LHKVHYLFGGNPGK 595 (723)
T ss_pred hhccCCceeeccCCcccccceeccccchhHHHHHH--hhhhhhhhcCCCCC
Confidence 113455555544432 34557889998543
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.12 E-value=1.6e-10 Score=81.78 Aligned_cols=50 Identities=34% Similarity=0.619 Sum_probs=46.2
Q ss_pred CCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCC
Q 010115 197 ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 249 (518)
Q Consensus 197 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r 249 (518)
+|.+|++++++++|||+||.......++++++||+++++|++++ +||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 58999999999999999999886578999999999999999998 888887
No 32
>PF13964 Kelch_6: Kelch motif
Probab=99.10 E-value=2e-10 Score=81.22 Aligned_cols=50 Identities=32% Similarity=0.571 Sum_probs=45.3
Q ss_pred CccceEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCC
Q 010115 146 ACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVAR 198 (518)
Q Consensus 146 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r 198 (518)
+|.+|++++++++|||+||........+++++||+++++|+.+++ ||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~---mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPP---MPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCC---CCCCC
Confidence 467899999999999999998766778899999999999999986 99887
No 33
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.98 E-value=2.9e-08 Score=92.48 Aligned_cols=207 Identities=14% Similarity=0.179 Sum_probs=129.9
Q ss_pred CCCCCcceEEEEE-C------CEEEEEcccCCCCcccCcEEEEEcCCCc--------EEEeecCCCCCCCCCCcEEEEEC
Q 010115 194 IPVARSGHTVVRA-S------SVLILFGGEDGKRRKLNDLHMFDLKSLT--------WLPLHCTGTGPSPRSNHVAALYD 258 (518)
Q Consensus 194 ~p~~r~~~~~~~~-~------~~iyv~GG~~~~~~~~~~~~~yd~~t~~--------W~~~~~~g~~p~~r~~~~~~~~~ 258 (518)
+|+-|.- +++.+ + ...++.||++.+++....+|+....+.. ..+....|+.|.+|++|++.++.
T Consensus 19 LPPLR~P-Av~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~ 97 (337)
T PF03089_consen 19 LPPLRCP-AVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVH 97 (337)
T ss_pred CCCCCCc-cEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEE
Confidence 5666654 44444 2 2566789999988888999998776533 33334458999999999998764
Q ss_pred --C-cEEEEEcCCCCC--------------CCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCC
Q 010115 259 --D-KNLLIFGGSSKS--------------KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK 321 (518)
Q Consensus 259 --~-~~lyv~GG~~~~--------------~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 321 (518)
+ ...++|||.+.- ...-.|+..|++-+..+.-.- +++..+..+|.+.+-++.+|++||+.-.
T Consensus 98 SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~l-pEl~dG~SFHvslar~D~VYilGGHsl~ 176 (337)
T PF03089_consen 98 SRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTL-PELQDGQSFHVSLARNDCVYILGGHSLE 176 (337)
T ss_pred ECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccc-hhhcCCeEEEEEEecCceEEEEccEEcc
Confidence 2 368999998521 234568889988777665433 3456678888888889999999998743
Q ss_pred --CCcCeEEEEECCC---CceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCC------------cEEEE
Q 010115 322 --KRHAETLIFDILK---GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSN------------QVEVL 384 (518)
Q Consensus 322 --~~~~~v~~yd~~~---~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~------------~v~~y 384 (518)
.+...++++..+- .-+-.+.. .......+.+.+...+.+..+|+||+..+... .+.+-
T Consensus 177 sd~Rpp~l~rlkVdLllGSP~vsC~v-----l~~glSisSAIvt~~~~~e~iIlGGY~sdsQKRm~C~~V~Ldd~~I~ie 251 (337)
T PF03089_consen 177 SDSRPPRLYRLKVDLLLGSPAVSCTV-----LQGGLSISSAIVTQTGPHEYIILGGYQSDSQKRMECNTVSLDDDGIHIE 251 (337)
T ss_pred CCCCCCcEEEEEEeecCCCceeEEEE-----CCCCceEeeeeEeecCCCceEEEecccccceeeeeeeEEEEeCCceEec
Confidence 3445566554321 11111111 12333345555555556788999999776533 33333
Q ss_pred EcccCCccccccCCCCCCCCceEeecCCCC
Q 010115 385 SIEKNESSMGRRSTPNAKGPGQLLFEKRSS 414 (518)
Q Consensus 385 d~~~~~w~~~~~~~~~~~~~~~~vfgG~~~ 414 (518)
..++-+|+.. ....-..|||+..
T Consensus 252 ~~E~P~Wt~d-------I~hSrtWFGgs~G 274 (337)
T PF03089_consen 252 EREPPEWTGD-------IKHSRTWFGGSMG 274 (337)
T ss_pred cCCCCCCCCC-------cCcCccccccccC
Confidence 3445556543 2333457777744
No 34
>PLN02772 guanylate kinase
Probab=98.92 E-value=8.5e-09 Score=103.03 Aligned_cols=90 Identities=18% Similarity=0.299 Sum_probs=79.0
Q ss_pred CCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCC
Q 010115 194 IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKT 273 (518)
Q Consensus 194 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~ 273 (518)
-..++.+|+++.+++++||+||.+..+...+.+++||..+.+|......|..|.+|.+|+++++++..|+|+++.+..
T Consensus 21 ~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~-- 98 (398)
T PLN02772 21 GVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP-- 98 (398)
T ss_pred cCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC--
Confidence 456889999999999999999998865578999999999999999999999999999999999988779999876554
Q ss_pred CCcEEEEEcCCC
Q 010115 274 LNDLYSLDFETM 285 (518)
Q Consensus 274 ~~~v~~yd~~~~ 285 (518)
-+++|.+...|.
T Consensus 99 ~~~~w~l~~~t~ 110 (398)
T PLN02772 99 DDSIWFLEVDTP 110 (398)
T ss_pred ccceEEEEcCCH
Confidence 367999887664
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.90 E-value=3.9e-09 Score=74.20 Aligned_cols=48 Identities=40% Similarity=0.706 Sum_probs=42.7
Q ss_pred CCEEEEEcccC-CCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEE
Q 010115 207 SSVLILFGGED-GKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 257 (518)
Q Consensus 207 ~~~iyv~GG~~-~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~ 257 (518)
+++||||||.+ .....++++|+||+.+++|+++. ++|.+|..|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~---~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIG---DLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECC---CCCCCccceEEEEC
Confidence 57899999998 44578999999999999999994 89999999999864
No 36
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.85 E-value=6.2e-09 Score=72.49 Aligned_cols=45 Identities=27% Similarity=0.519 Sum_probs=41.2
Q ss_pred CccceEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeee
Q 010115 146 ACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEA 190 (518)
Q Consensus 146 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 190 (518)
+|.+|++++++++|||+||.......++++++||+.+++|+.+++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCC
Confidence 478899999999999999998867788999999999999999987
No 37
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.84 E-value=4.5e-09 Score=73.24 Aligned_cols=44 Identities=32% Similarity=0.611 Sum_probs=40.9
Q ss_pred CCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEee
Q 010115 197 ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLH 240 (518)
Q Consensus 197 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 240 (518)
+|.+|++++++++||++||.+.....++++++||+.+++|+.++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 58999999999999999999986678999999999999999997
No 38
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.82 E-value=8.1e-09 Score=72.56 Aligned_cols=48 Identities=40% Similarity=0.812 Sum_probs=42.0
Q ss_pred CCEEEEEcCcC-CCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE
Q 010115 156 GKKVLLVGGKT-DSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA 206 (518)
Q Consensus 156 ~~~iyv~GG~~-~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~ 206 (518)
+++|||+||.. ......+++|+||+.+++|+++. ++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~---~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIG---DLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECC---CCCCCccceEEEEC
Confidence 57999999998 35666889999999999999984 59999999999863
No 39
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.82 E-value=5.2e-09 Score=73.62 Aligned_cols=47 Identities=38% Similarity=0.733 Sum_probs=32.2
Q ss_pred CCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCC
Q 010115 197 ARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP 246 (518)
Q Consensus 197 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p 246 (518)
+|++|+++.+ +++||||||.+..+..++++|+||+++++|++++ ++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~---~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP---SMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-----SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC---CCC
Confidence 6999999998 5899999999988778999999999999999995 555
No 40
>PLN02772 guanylate kinase
Probab=98.77 E-value=5.2e-08 Score=97.47 Aligned_cols=88 Identities=14% Similarity=0.288 Sum_probs=76.4
Q ss_pred CCCccceEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCcc
Q 010115 144 IPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRK 222 (518)
Q Consensus 144 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 222 (518)
..++..|+++++++++||+||.++.....+.+++||..|++|......|..|.+|.+|+++++ +++|+|+++....+
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~-- 99 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD-- 99 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc--
Confidence 446678999999999999999988655678999999999999999989999999999999998 57999998876652
Q ss_pred cCcEEEEEcCCC
Q 010115 223 LNDLHMFDLKSL 234 (518)
Q Consensus 223 ~~~~~~yd~~t~ 234 (518)
+++|.+...|.
T Consensus 100 -~~~w~l~~~t~ 110 (398)
T PLN02772 100 -DSIWFLEVDTP 110 (398)
T ss_pred -cceEEEEcCCH
Confidence 78899888764
No 41
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.74 E-value=2.8e-08 Score=69.82 Aligned_cols=44 Identities=32% Similarity=0.579 Sum_probs=39.8
Q ss_pred CCcceEEEEECCEEEEEccc--CCCCcccCcEEEEEcCCCcEEEee
Q 010115 197 ARSGHTVVRASSVLILFGGE--DGKRRKLNDLHMFDLKSLTWLPLH 240 (518)
Q Consensus 197 ~r~~~~~~~~~~~iyv~GG~--~~~~~~~~~~~~yd~~t~~W~~~~ 240 (518)
+|++|++++++++|||+||. .......+++++||+++++|+.++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 68999999999999999999 444567899999999999999997
No 42
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.70 E-value=3.7e-08 Score=69.17 Aligned_cols=45 Identities=36% Similarity=0.649 Sum_probs=40.9
Q ss_pred CCCCcEEEEECCcEEEEEcCC---CCCCCCCcEEEEEcCCCeEEEeecC
Q 010115 248 PRSNHVAALYDDKNLLIFGGS---SKSKTLNDLYSLDFETMIWTRIKIR 293 (518)
Q Consensus 248 ~r~~~~~~~~~~~~lyv~GG~---~~~~~~~~v~~yd~~~~~W~~v~~~ 293 (518)
||+.|++++++++ |||+||+ ......++++.||+++++|+.++.+
T Consensus 1 ~r~~hs~~~~~~k-iyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGK-IYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCE-EEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 6899999999999 9999999 5567889999999999999999765
No 43
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.70 E-value=1.9e-06 Score=80.69 Aligned_cols=171 Identities=21% Similarity=0.284 Sum_probs=108.5
Q ss_pred CCccceEEEEE-C------CEEEEEcCcCCCCCCceeEEEEECCCCc--------EEEeeecCCCCCCCcceEEEEEC--
Q 010115 145 PACRGHSLISW-G------KKVLLVGGKTDSGSDRVSVWTFDTETEC--------WSVVEAKGDIPVARSGHTVVRAS-- 207 (518)
Q Consensus 145 ~~r~~~~~~~~-~------~~iyv~GG~~~~~~~~~~v~~yd~~t~~--------W~~~~~~~~~p~~r~~~~~~~~~-- 207 (518)
|+.+..+++.+ + ...++.||++.++...+.+|.....+.. .++..-.|++|.+|++|++.++.
T Consensus 20 PPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~Sr 99 (337)
T PF03089_consen 20 PPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSR 99 (337)
T ss_pred CCCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEEC
Confidence 33344555555 2 2466779999888878888888766533 23333457899999999997752
Q ss_pred --CEEEEEcccCCC-------------CcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCC--
Q 010115 208 --SVLILFGGEDGK-------------RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK-- 270 (518)
Q Consensus 208 --~~iyv~GG~~~~-------------~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~-- 270 (518)
....+|||+.-- -.+...++.+|++-...+.-... .+..+..+|.+..-++. +|++||+.-
T Consensus 100 GKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lp-El~dG~SFHvslar~D~-VYilGGHsl~s 177 (337)
T PF03089_consen 100 GKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLP-ELQDGQSFHVSLARNDC-VYILGGHSLES 177 (337)
T ss_pred CcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccch-hhcCCeEEEEEEecCce-EEEEccEEccC
Confidence 368889998421 01345688899988777665322 56678888888888888 999999843
Q ss_pred CCCCCcEEEEEcCCC---eEEEeecCCCCCCCCcceEEEEE---CCEEEEEcccCC
Q 010115 271 SKTLNDLYSLDFETM---IWTRIKIRGFHPSPRAGCCGVLC---GTKWYIAGGGSR 320 (518)
Q Consensus 271 ~~~~~~v~~yd~~~~---~W~~v~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~ 320 (518)
......++++..+-- -+-.-... +......+|++. .++.+|+||+..
T Consensus 178 d~Rpp~l~rlkVdLllGSP~vsC~vl---~~glSisSAIvt~~~~~e~iIlGGY~s 230 (337)
T PF03089_consen 178 DSRPPRLYRLKVDLLLGSPAVSCTVL---QGGLSISSAIVTQTGPHEYIILGGYQS 230 (337)
T ss_pred CCCCCcEEEEEEeecCCCceeEEEEC---CCCceEeeeeEeecCCCceEEEecccc
Confidence 334456777654321 11111111 233333344433 467889999864
No 44
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.69 E-value=1.8e-08 Score=70.84 Aligned_cols=45 Identities=33% Similarity=0.677 Sum_probs=31.0
Q ss_pred CccceEEEEE-CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeee
Q 010115 146 ACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEA 190 (518)
Q Consensus 146 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 190 (518)
+|.+|+++.+ +++|||+||........+++|+||+++++|+++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~ 46 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPS 46 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--S
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCC
Confidence 4788999998 58999999998877788999999999999999954
No 45
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.65 E-value=2.9e-06 Score=80.18 Aligned_cols=151 Identities=15% Similarity=0.168 Sum_probs=97.7
Q ss_pred EEEEECCCCcEEEeeecCCCCCCCcceEEE-EECCEEEEEcccCCCCcccCcEEEEEcCC----CcEEEeecCCCCCCCC
Q 010115 175 VWTFDTETECWSVVEAKGDIPVARSGHTVV-RASSVLILFGGEDGKRRKLNDLHMFDLKS----LTWLPLHCTGTGPSPR 249 (518)
Q Consensus 175 v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~t----~~W~~~~~~g~~p~~r 249 (518)
-..||+.+++++.+.. ..--.+.+.+ .-++++++.||.... ...+..|++.+ ..|.+... .|..+|
T Consensus 48 s~~yD~~tn~~rpl~v----~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~--~m~~~R 118 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTV----QTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPN--DMQSGR 118 (243)
T ss_pred EEEEecCCCcEEeccC----CCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcc--cccCCC
Confidence 4579999999998874 3333333333 347899999998663 35677888865 67988752 489999
Q ss_pred CCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC------CeEEEeecCCC-CCCCCcceEEEEECCEEEEEcccCCCC
Q 010115 250 SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET------MIWTRIKIRGF-HPSPRAGCCGVLCGTKWYIAGGGSRKK 322 (518)
Q Consensus 250 ~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~------~~W~~v~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~ 322 (518)
...++..+.+..++|+||.... .+.|-+.. ..|..+..... .+..-+-+..+.-+++||+++..
T Consensus 119 WYpT~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~---- 189 (243)
T PF07250_consen 119 WYPTATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR---- 189 (243)
T ss_pred ccccceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC----
Confidence 9999999988779999998732 33343331 12222221110 12222222333338999999874
Q ss_pred CcCeEEEEECCCCce-EEeecCCCC
Q 010115 323 RHAETLIFDILKGEW-SVAITSPSS 346 (518)
Q Consensus 323 ~~~~v~~yd~~~~~W-~~~~~~~~~ 346 (518)
+..+||+.++++ +.++..|..
T Consensus 190 ---~s~i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 190 ---GSIIYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred ---CcEEEeCCCCeEEeeCCCCCCC
Confidence 356899999987 677765544
No 46
>PF13854 Kelch_5: Kelch motif
Probab=98.58 E-value=1.2e-07 Score=64.00 Aligned_cols=40 Identities=40% Similarity=0.781 Sum_probs=35.5
Q ss_pred CCCCccceEEEEECCEEEEEcCcC--CCCCCCcEEEEEcCCC
Q 010115 85 KPIPRFNHAAAVIGNKMIVVGGES--GNGLLDDVQVLNFDRF 124 (518)
Q Consensus 85 ~p~~R~~~~~~~~~~~lyv~GG~~--~~~~~~~v~~yd~~~~ 124 (518)
+|.+|.+|++++++++|||+||.. ....++++|+||+.++
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 488999999999999999999988 4667899999998763
No 47
>PF13854 Kelch_5: Kelch motif
Probab=98.57 E-value=1.4e-07 Score=63.69 Aligned_cols=40 Identities=40% Similarity=0.658 Sum_probs=36.2
Q ss_pred CCCCCcceEEEEECCEEEEEcccCC-CCcccCcEEEEEcCC
Q 010115 194 IPVARSGHTVVRASSVLILFGGEDG-KRRKLNDLHMFDLKS 233 (518)
Q Consensus 194 ~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~yd~~t 233 (518)
+|.+|++|++++++++|||+||.+. ....++++|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4889999999999999999999994 567899999999876
No 48
>smart00612 Kelch Kelch domain.
Probab=98.45 E-value=2.6e-07 Score=63.98 Aligned_cols=47 Identities=32% Similarity=0.684 Sum_probs=41.3
Q ss_pred EEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECC
Q 010115 209 VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 259 (518)
Q Consensus 209 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~ 259 (518)
+||++||.+.. ..++++++||+.+++|+.++ ++|.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 48999999763 56899999999999999987 8999999999988764
No 49
>smart00612 Kelch Kelch domain.
Probab=98.35 E-value=6.7e-07 Score=61.87 Aligned_cols=46 Identities=26% Similarity=0.441 Sum_probs=40.7
Q ss_pred EEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECC
Q 010115 262 LLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGT 310 (518)
Q Consensus 262 lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~ 310 (518)
|||+||.......+++++||+++++|+.++++ |.+|..++++++++
T Consensus 2 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~g 47 (47)
T smart00612 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSM---PTPRSGHGVAVING 47 (47)
T ss_pred EEEEeCCCCCceeeeEEEECCCCCeEccCCCC---CCccccceEEEeCC
Confidence 89999997766789999999999999999876 88999999888764
No 50
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.19 E-value=0.00052 Score=65.29 Aligned_cols=204 Identities=12% Similarity=0.117 Sum_probs=110.3
Q ss_pred eEEEEECCCCcEEEeeecCCCCCC---Ccce-EEEEEC----C-EEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCC
Q 010115 174 SVWTFDTETECWSVVEAKGDIPVA---RSGH-TVVRAS----S-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGT 244 (518)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~~~~p~~---r~~~-~~~~~~----~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~ 244 (518)
.+.++||.|++|..+++ .+.+ ...+ ....++ . ++..+...... .....+++|++.++.|+.+...
T Consensus 15 ~~~V~NP~T~~~~~LP~---~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~~~~Wr~~~~~-- 88 (230)
T TIGR01640 15 RLVVWNPSTGQSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLGSNSWRTIECS-- 88 (230)
T ss_pred cEEEECCCCCCEEecCC---CCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeCCCCccccccC--
Confidence 58899999999999974 2211 1111 111222 1 45555433211 1235789999999999998632
Q ss_pred CCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEE-eecCCCCCCCCcceEEEEECCEEEEEcccCCCCC
Q 010115 245 GPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-IKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKR 323 (518)
Q Consensus 245 ~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 323 (518)
.+........+.+++. +|-+.-.........|..||+.+.+|+. ++..............+.++++|.++...... .
T Consensus 89 ~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~-~ 166 (230)
T TIGR01640 89 PPHHPLKSRGVCINGV-LYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDT-N 166 (230)
T ss_pred CCCccccCCeEEECCE-EEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCC-C
Confidence 1211112225667777 6666532221111269999999999995 54321100111234456678998887654321 2
Q ss_pred cCeEEEEE-CCCCceEEeecCCCCC-CCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 010115 324 HAETLIFD-ILKGEWSVAITSPSSS-VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (518)
Q Consensus 324 ~~~v~~yd-~~~~~W~~~~~~~~~~-~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~ 389 (518)
.-++|+.+ -...+|+++-..+... +.....+....+.+ ++.|++.-... ...-+..||+.++
T Consensus 167 ~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~--~g~I~~~~~~~--~~~~~~~y~~~~~ 230 (230)
T TIGR01640 167 NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTD--KGEIVLCCEDE--NPFYIFYYNVGEN 230 (230)
T ss_pred cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEee--CCEEEEEeCCC--CceEEEEEeccCC
Confidence 25788886 4466799876544321 11111122222332 34566554431 1113888998775
No 51
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.15 E-value=0.0011 Score=63.11 Aligned_cols=202 Identities=12% Similarity=0.106 Sum_probs=113.3
Q ss_pred CcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEEC----C-EEEEEcCcCCCCCCceeEEEEECCCCcEEEe
Q 010115 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG----K-KVLLVGGKTDSGSDRVSVWTFDTETECWSVV 188 (518)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~----~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 188 (518)
..+.++||.+.+|..++..... ...+.+...+ ...+ + ||..+..... ......+++|+..+++|+.+
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~------~~~~~~~~~~-~G~d~~~~~YKVv~~~~~~~-~~~~~~~~Vys~~~~~Wr~~ 85 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSR------RSNKESDTYF-LGYDPIEKQYKVLCFSDRSG-NRNQSEHQVYTLGSNSWRTI 85 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCc------ccccccceEE-EeecccCCcEEEEEEEeecC-CCCCccEEEEEeCCCCcccc
Confidence 4689999999999999752100 0001111011 1122 1 4555543321 11234688999999999998
Q ss_pred eecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEE-eecCCCCCCCC----CCcEEEEECCcEEE
Q 010115 189 EAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-LHCTGTGPSPR----SNHVAALYDDKNLL 263 (518)
Q Consensus 189 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~g~~p~~r----~~~~~~~~~~~~ly 263 (518)
... .+........+.++|.||-+.-.... .....+..||+.+.+|.. ++ +|..+ .....+.++++ |.
T Consensus 86 ~~~--~~~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~-L~ 157 (230)
T TIGR01640 86 ECS--PPHHPLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGK-LA 157 (230)
T ss_pred ccC--CCCccccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCE-EE
Confidence 741 12111222266789999988754321 111269999999999995 63 34332 23455667777 66
Q ss_pred EEcCCCCCCCCCcEEEEE-cCCCeEEEeecCCCCCCCCcc----eEEEEECCEEEEEcccCCCCCcCeEEEEECCCC
Q 010115 264 IFGGSSKSKTLNDLYSLD-FETMIWTRIKIRGFHPSPRAG----CCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG 335 (518)
Q Consensus 264 v~GG~~~~~~~~~v~~yd-~~~~~W~~v~~~~~~p~~r~~----~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 335 (518)
++...... ..-+||+++ -....|+++-....++.+... ...+..+++|++..... ...-+..||+.++
T Consensus 158 ~v~~~~~~-~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~---~~~~~~~y~~~~~ 230 (230)
T TIGR01640 158 VLKQKKDT-NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE---NPFYIFYYNVGEN 230 (230)
T ss_pred EEEecCCC-CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC---CceEEEEEeccCC
Confidence 65543221 124688875 346679987654321222221 23344578888876531 1123788998764
No 52
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.04 E-value=0.00012 Score=69.29 Aligned_cols=143 Identities=18% Similarity=0.131 Sum_probs=90.9
Q ss_pred cEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC----CeEEEeecCCCCCCCC
Q 010115 225 DLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET----MIWTRIKIRGFHPSPR 300 (518)
Q Consensus 225 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~----~~W~~v~~~~~~p~~r 300 (518)
.-..||+.+++++.+. ...--++.+.+.+.+..+++.||.... ...+-.|++.+ ..|.+.... +..+|
T Consensus 47 ~s~~yD~~tn~~rpl~----v~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~~~--m~~~R 118 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLT----VQTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESPND--MQSGR 118 (243)
T ss_pred EEEEEecCCCcEEecc----CCCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCCCceECccc--ccCCC
Confidence 3567999999999985 344444444455555559999998553 34577788754 679887642 47889
Q ss_pred cceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCC------CceEEeecCCCCCCCCCCCc-eEEEEeeCCccEEEEEcC
Q 010115 301 AGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILK------GEWSVAITSPSSSVTSNKGF-TLVLVQHKEKDFLVAFGG 372 (518)
Q Consensus 301 ~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~------~~W~~~~~~~~~~~~~r~~~-s~~~~~~~~~~~l~v~GG 372 (518)
.+.+++.+ +++++|+||.... .+.|-+.. ..|..+...... .+.--+ -+.++. +++||+++.
T Consensus 119 WYpT~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~--~~~nlYP~~~llP---dG~lFi~an 188 (243)
T PF07250_consen 119 WYPTATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDT--LPNNLYPFVHLLP---DGNLFIFAN 188 (243)
T ss_pred ccccceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhcc--CccccCceEEEcC---CCCEEEEEc
Confidence 99999888 8899999998732 33343431 123223221111 112222 233332 366999998
Q ss_pred CCCCCCCcEEEEEcccCCc
Q 010115 373 IKKEPSNQVEVLSIEKNES 391 (518)
Q Consensus 373 ~~~~~~~~v~~yd~~~~~w 391 (518)
. +-.+||..++++
T Consensus 189 ~------~s~i~d~~~n~v 201 (243)
T PF07250_consen 189 R------GSIIYDYKTNTV 201 (243)
T ss_pred C------CcEEEeCCCCeE
Confidence 6 457899999875
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.77 E-value=0.06 Score=55.66 Aligned_cols=255 Identities=16% Similarity=0.143 Sum_probs=136.0
Q ss_pred CCCCeEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCCcEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccc
Q 010115 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRG 149 (518)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~ 149 (518)
-...|+.-...+ .+......+.++.++.||+.... ..++.||..+. .|+.-..... ...+...+.+..
T Consensus 44 ~~~~W~~~~g~g-~~~~~~~~sPvv~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~~~~~---~~~~~~~~~~~~ 113 (394)
T PRK11138 44 PTTVWSTSVGDG-VGDYYSRLHPAVAYNKVYAADRA------GLVKALDADTGKEIWSVDLSEKD---GWFSKNKSALLS 113 (394)
T ss_pred cceeeEEEcCCC-CccceeeeccEEECCEEEEECCC------CeEEEEECCCCcEeeEEcCCCcc---cccccccccccc
Confidence 345687553211 11111223446678999997652 36889998764 6876433100 000000112223
Q ss_pred eEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEE
Q 010115 150 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 227 (518)
Q Consensus 150 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 227 (518)
.+.++.+++||+.+.. ..++.+|.++++ |+.-.. .. ...+-++.++.+|+..+ ...++
T Consensus 114 ~~~~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~~-----~~-~~ssP~v~~~~v~v~~~-------~g~l~ 173 (394)
T PRK11138 114 GGVTVAGGKVYIGSEK-------GQVYALNAEDGEVAWQTKVA-----GE-ALSRPVVSDGLVLVHTS-------NGMLQ 173 (394)
T ss_pred cccEEECCEEEEEcCC-------CEEEEEECCCCCCcccccCC-----Cc-eecCCEEECCEEEEECC-------CCEEE
Confidence 3456678899875422 258999998875 976432 11 11223456788887532 13589
Q ss_pred EEEcCCCc--EEEeecCCCCCC--CCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC--eEEEeecCCC--CCCC
Q 010115 228 MFDLKSLT--WLPLHCTGTGPS--PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGF--HPSP 299 (518)
Q Consensus 228 ~yd~~t~~--W~~~~~~g~~p~--~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~v~~~~~--~p~~ 299 (518)
.+|+++.+ |+.-. ..|. .+...+-++.++. +|+..+ + ..++.+|+++. .|+.-...+. ....
T Consensus 174 ald~~tG~~~W~~~~---~~~~~~~~~~~sP~v~~~~-v~~~~~-~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~ 243 (394)
T PRK11138 174 ALNESDGAVKWTVNL---DVPSLTLRGESAPATAFGG-AIVGGD-N-----GRVSAVLMEQGQLIWQQRISQPTGATEID 243 (394)
T ss_pred EEEccCCCEeeeecC---CCCcccccCCCCCEEECCE-EEEEcC-C-----CEEEEEEccCChhhheeccccCCCccchh
Confidence 99998765 87753 1221 1222233344554 555432 2 35888998765 4865322100 0000
Q ss_pred C---cceEEEEECCEEEEEcccCCCCCcCeEEEEECCCC--ceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCC
Q 010115 300 R---AGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG--EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 374 (518)
Q Consensus 300 r---~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~ 374 (518)
| ...+-++.++.+|+.+. . ..++++|+.++ .|+.-. ... ...+.. .+.||+....
T Consensus 244 ~~~~~~~sP~v~~~~vy~~~~-~-----g~l~ald~~tG~~~W~~~~----~~~-----~~~~~~----~~~vy~~~~~- 303 (394)
T PRK11138 244 RLVDVDTTPVVVGGVVYALAY-N-----GNLVALDLRSGQIVWKREY----GSV-----NDFAVD----GGRIYLVDQN- 303 (394)
T ss_pred cccccCCCcEEECCEEEEEEc-C-----CeEEEEECCCCCEEEeecC----CCc-----cCcEEE----CCEEEEEcCC-
Confidence 1 11234456888888653 1 35899999876 487621 111 112222 2667776533
Q ss_pred CCCCCcEEEEEcccCC
Q 010115 375 KEPSNQVEVLSIEKNE 390 (518)
Q Consensus 375 ~~~~~~v~~yd~~~~~ 390 (518)
..+..+|+++.+
T Consensus 304 ----g~l~ald~~tG~ 315 (394)
T PRK11138 304 ----DRVYALDTRGGV 315 (394)
T ss_pred ----CeEEEEECCCCc
Confidence 268888887654
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.48 E-value=0.09 Score=54.31 Aligned_cols=227 Identities=16% Similarity=0.199 Sum_probs=123.7
Q ss_pred ceEEEEECCEEEEEcCcCCCCCCCcEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCC
Q 010115 91 NHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDS 168 (518)
Q Consensus 91 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~ 168 (518)
..+.++.++++|+.+. + ..++.+|..+. .|+.-... + ...+-++.++.+|+..+.
T Consensus 113 ~~~~~v~~~~v~v~~~-~-----g~l~ald~~tG~~~W~~~~~~------------~--~~ssP~v~~~~v~v~~~~--- 169 (394)
T PRK11138 113 SGGVTVAGGKVYIGSE-K-----GQVYALNAEDGEVAWQTKVAG------------E--ALSRPVVSDGLVLVHTSN--- 169 (394)
T ss_pred ccccEEECCEEEEEcC-C-----CEEEEEECCCCCCcccccCCC------------c--eecCCEEECCEEEEECCC---
Confidence 3445667888887543 2 36899998764 78764331 0 122334568888875432
Q ss_pred CCCceeEEEEECCCCc--EEEeeecCCCCC--CCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCC--cEEEeecC
Q 010115 169 GSDRVSVWTFDTETEC--WSVVEAKGDIPV--ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL--TWLPLHCT 242 (518)
Q Consensus 169 ~~~~~~v~~yd~~t~~--W~~~~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~ 242 (518)
..++.+|+++++ |+.-.. .|. .+...+-++.++.+|+..+ + ..++.+|+++. .|+.-...
T Consensus 170 ----g~l~ald~~tG~~~W~~~~~---~~~~~~~~~~sP~v~~~~v~~~~~-~------g~v~a~d~~~G~~~W~~~~~~ 235 (394)
T PRK11138 170 ----GMLQALNESDGAVKWTVNLD---VPSLTLRGESAPATAFGGAIVGGD-N------GRVSAVLMEQGQLIWQQRISQ 235 (394)
T ss_pred ----CEEEEEEccCCCEeeeecCC---CCcccccCCCCCEEECCEEEEEcC-C------CEEEEEEccCChhhheecccc
Confidence 258999999876 876432 221 1222233455677776432 1 34777888765 48653210
Q ss_pred --CCCCCCC---CCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC--eEEEeecCCCCCCCCcceEEEEECCEEEEE
Q 010115 243 --GTGPSPR---SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGFHPSPRAGCCGVLCGTKWYIA 315 (518)
Q Consensus 243 --g~~p~~r---~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~ 315 (518)
+.....| ...+-++.++. +|+.+. + ..++.+|+++. .|+.-.. .+ ...++.+++||+.
T Consensus 236 ~~~~~~~~~~~~~~~sP~v~~~~-vy~~~~-~-----g~l~ald~~tG~~~W~~~~~-----~~---~~~~~~~~~vy~~ 300 (394)
T PRK11138 236 PTGATEIDRLVDVDTTPVVVGGV-VYALAY-N-----GNLVALDLRSGQIVWKREYG-----SV---NDFAVDGGRIYLV 300 (394)
T ss_pred CCCccchhcccccCCCcEEECCE-EEEEEc-C-----CeEEEEECCCCCEEEeecCC-----Cc---cCcEEECCEEEEE
Confidence 0000001 11233345555 777542 2 36999999875 4875321 11 1235568999987
Q ss_pred cccCCCCCcCeEEEEECCCC--ceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 316 GGGSRKKRHAETLIFDILKG--EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 316 GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
... ..++.+|+.++ .|+.-. ...+...+.+..+ +.||+... + ..++++|..+.+
T Consensus 301 ~~~------g~l~ald~~tG~~~W~~~~------~~~~~~~sp~v~~----g~l~v~~~-~----G~l~~ld~~tG~ 356 (394)
T PRK11138 301 DQN------DRVYALDTRGGVELWSQSD------LLHRLLTAPVLYN----GYLVVGDS-E----GYLHWINREDGR 356 (394)
T ss_pred cCC------CeEEEEECCCCcEEEcccc------cCCCcccCCEEEC----CEEEEEeC-C----CEEEEEECCCCC
Confidence 532 45999999876 476421 0111112223332 55665432 2 257778877664
No 55
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.34 E-value=0.24 Score=50.71 Aligned_cols=227 Identities=17% Similarity=0.173 Sum_probs=121.7
Q ss_pred eEEEEECCEEEEEcCcCCCCCCCcEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCC
Q 010115 92 HAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (518)
Q Consensus 92 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 169 (518)
.+.++.++.+|+.+.. ..++.||+.+. .|+.-... ....+.++.++.+|+.+..
T Consensus 59 ~~p~v~~~~v~v~~~~------g~v~a~d~~tG~~~W~~~~~~--------------~~~~~p~v~~~~v~v~~~~---- 114 (377)
T TIGR03300 59 LQPAVAGGKVYAADAD------GTVVALDAETGKRLWRVDLDE--------------RLSGGVGADGGLVFVGTEK---- 114 (377)
T ss_pred cceEEECCEEEEECCC------CeEEEEEccCCcEeeeecCCC--------------CcccceEEcCCEEEEEcCC----
Confidence 4456678888886642 35899998765 68764331 1122344557788765332
Q ss_pred CCceeEEEEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCC--cEEEeecCCCC
Q 010115 170 SDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL--TWLPLHCTGTG 245 (518)
Q Consensus 170 ~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~g~~ 245 (518)
..++.+|..+++ |+.... .. ...+.++.++.+|+..+ -..++.+|+++. .|+..... +.
T Consensus 115 ---g~l~ald~~tG~~~W~~~~~-----~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~-~~ 177 (377)
T TIGR03300 115 ---GEVIALDAEDGKELWRAKLS-----SE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVT-PA 177 (377)
T ss_pred ---CEEEEEECCCCcEeeeeccC-----ce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCC-Cc
Confidence 268999998765 875432 11 11223446777777532 135889998765 48754311 10
Q ss_pred CCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC--eEEEeecCCC--CCCCC---cceEEEEECCEEEEEccc
Q 010115 246 PSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGF--HPSPR---AGCCGVLCGTKWYIAGGG 318 (518)
Q Consensus 246 p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~v~~~~~--~p~~r---~~~~~~~~~~~iyv~GG~ 318 (518)
...+...+.++.++. + ++|..+ ..++.+|+++. .|+.-...+. ....| ...+.++.++.+|+....
T Consensus 178 ~~~~~~~sp~~~~~~-v-~~~~~~-----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~ 250 (377)
T TIGR03300 178 LTLRGSASPVIADGG-V-LVGFAG-----GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ 250 (377)
T ss_pred eeecCCCCCEEECCE-E-EEECCC-----CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC
Confidence 011222333444543 4 444332 25899998765 4764322100 00001 122334457888886431
Q ss_pred CCCCCcCeEEEEECCCC--ceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 319 SRKKRHAETLIFDILKG--EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 319 ~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
..+++||++++ .|+.-. . . ..+.+ +. .++||+.... ..+.++|..+.+
T Consensus 251 ------g~l~a~d~~tG~~~W~~~~--~-----~--~~~p~-~~---~~~vyv~~~~-----G~l~~~d~~tG~ 300 (377)
T TIGR03300 251 ------GRVAALDLRSGRVLWKRDA--S-----S--YQGPA-VD---DNRLYVTDAD-----GVVVALDRRSGS 300 (377)
T ss_pred ------CEEEEEECCCCcEEEeecc--C-----C--ccCce-Ee---CCEEEEECCC-----CeEEEEECCCCc
Confidence 35899999775 475521 0 0 11222 22 2567765432 368888887654
No 56
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.07 E-value=0.28 Score=46.32 Aligned_cols=185 Identities=17% Similarity=0.234 Sum_probs=108.1
Q ss_pred EEECCEEEEEcCcCCCCCCCcEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCc
Q 010115 95 AVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDR 172 (518)
Q Consensus 95 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 172 (518)
+..++.+|+..+ ...++.+|+.+. .|+.-.. .......+..++.+|+..+.
T Consensus 33 ~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~~--------------~~~~~~~~~~~~~v~v~~~~------- 85 (238)
T PF13360_consen 33 VPDGGRVYVASG------DGNLYALDAKTGKVLWRFDLP--------------GPISGAPVVDGGRVYVGTSD------- 85 (238)
T ss_dssp EEETTEEEEEET------TSEEEEEETTTSEEEEEEECS--------------SCGGSGEEEETTEEEEEETT-------
T ss_pred EEeCCEEEEEcC------CCEEEEEECCCCCEEEEeecc--------------ccccceeeecccccccccce-------
Confidence 347888998843 357899998776 5766543 11222247778999888632
Q ss_pred eeEEEEECCCCc--EEE-eeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCc--EEEeecCCCCCC
Q 010115 173 VSVWTFDTETEC--WSV-VEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPS 247 (518)
Q Consensus 173 ~~v~~yd~~t~~--W~~-~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~ 247 (518)
+.++.+|..+++ |+. .......+ .+.....++.++.+|+... ...+..+|+++.+ |+... ..+.
T Consensus 86 ~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~---~~~~ 154 (238)
T PF13360_consen 86 GSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPV---GEPR 154 (238)
T ss_dssp SEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEES---STT-
T ss_pred eeeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeec---CCCC
Confidence 169999988876 984 43311111 2344445556777777643 3568999998764 76643 2221
Q ss_pred CCC-------CcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCe--EEEeecCCCCCCCCcceEEEEECCEEEEEccc
Q 010115 248 PRS-------NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGG 318 (518)
Q Consensus 248 ~r~-------~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 318 (518)
.-. ..+..++.+..+|+..+.. .+..+|..+++ |+.. .. . ........++.+|+.. .
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~d~~tg~~~w~~~-~~----~--~~~~~~~~~~~l~~~~-~ 220 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAVDLATGEKLWSKP-IS----G--IYSLPSVDGGTLYVTS-S 220 (238)
T ss_dssp SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEEETTTTEEEEEEC-SS-------ECECEECCCTEEEEEE-T
T ss_pred CCcceeeecccccceEEECCEEEEEcCCC------eEEEEECCCCCEEEEec-CC----C--ccCCceeeCCEEEEEe-C
Confidence 111 1123334434588876543 26777998887 7433 21 1 1111334477788776 3
Q ss_pred CCCCCcCeEEEEECCCCc
Q 010115 319 SRKKRHAETLIFDILKGE 336 (518)
Q Consensus 319 ~~~~~~~~v~~yd~~~~~ 336 (518)
. ..++++|+.+++
T Consensus 221 ~-----~~l~~~d~~tG~ 233 (238)
T PF13360_consen 221 D-----GRLYALDLKTGK 233 (238)
T ss_dssp T-----TEEEEEETTTTE
T ss_pred C-----CEEEEEECCCCC
Confidence 2 469999999874
No 57
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.06 E-value=0.31 Score=46.64 Aligned_cols=222 Identities=12% Similarity=0.048 Sum_probs=120.3
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCceeE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 175 (518)
++.||+.--. ...++++++.+..-..... + . -.+++.. ++.+|+.... .+
T Consensus 11 ~g~l~~~D~~-----~~~i~~~~~~~~~~~~~~~-----------~--~--~~G~~~~~~~g~l~v~~~~--------~~ 62 (246)
T PF08450_consen 11 DGRLYWVDIP-----GGRIYRVDPDTGEVEVIDL-----------P--G--PNGMAFDRPDGRLYVADSG--------GI 62 (246)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTTEEEEEES-----------S--S--EEEEEEECTTSEEEEEETT--------CE
T ss_pred CCEEEEEEcC-----CCEEEEEECCCCeEEEEec-----------C--C--CceEEEEccCCEEEEEEcC--------ce
Confidence 4677776432 2578999999987665443 1 1 2344444 6888887553 25
Q ss_pred EEEECCCCcEEEeeec--CCCCCCCcceEEEEECCEEEEEcccCCCCccc--CcEEEEEcCCCcEEEeecCCCCCCCCCC
Q 010115 176 WTFDTETECWSVVEAK--GDIPVARSGHTVVRASSVLILFGGEDGKRRKL--NDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (518)
Q Consensus 176 ~~yd~~t~~W~~~~~~--~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~~yd~~t~~W~~~~~~g~~p~~r~~ 251 (518)
..+|+.+++++.+... +..+..+..-.++--++.||+---........ ..++++++. .+.+.+.. .+..+
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~p--- 136 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFP--- 136 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSE---
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--Ccccc---
Confidence 6679999999988762 11133333333344467888753221111112 569999998 66665542 11111
Q ss_pred cEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCC--CeEEEeecCCCCCCCC-cceEEEEE-CCEEEEEcccCCCCCcCe
Q 010115 252 HVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFET--MIWTRIKIRGFHPSPR-AGCCGVLC-GTKWYIAGGGSRKKRHAE 326 (518)
Q Consensus 252 ~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~--~~W~~v~~~~~~p~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~ 326 (518)
...+.. +++.||+.- ...+.|++|++.. ..+.........+... .--++++. +++||+..-.. ..
T Consensus 137 NGi~~s~dg~~lyv~d-----s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~-----~~ 206 (246)
T PF08450_consen 137 NGIAFSPDGKTLYVAD-----SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG-----GR 206 (246)
T ss_dssp EEEEEETTSSEEEEEE-----TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT-----TE
T ss_pred cceEECCcchheeecc-----cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC-----CE
Confidence 234444 345577743 2345699999863 3243222111112221 12234443 78999973211 45
Q ss_pred EEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEE
Q 010115 327 TLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAF 370 (518)
Q Consensus 327 v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~ 370 (518)
|++||++...-..+.. |. ...+.+++...+.+.|||.
T Consensus 207 I~~~~p~G~~~~~i~~-p~------~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 207 IVVFDPDGKLLREIEL-PV------PRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEETTSCEEEEEE--SS------SSEEEEEEESTTSSEEEEE
T ss_pred EEEECCCccEEEEEcC-CC------CCEEEEEEECCCCCEEEEE
Confidence 9999999776666653 21 1345566654556677764
No 58
>PRK13684 Ycf48-like protein; Provisional
Probab=96.90 E-value=0.48 Score=47.74 Aligned_cols=243 Identities=13% Similarity=0.154 Sum_probs=120.5
Q ss_pred CCCCeEEeccCCCCCCCcc-ceEEEEECCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccce
Q 010115 72 NSENWMVLSIAGDKPIPRF-NHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGH 150 (518)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R~-~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~ 150 (518)
.-.+|+.+... .|.... -.++...++..|+.|.. ..+++=.=...+|+++... ...+. ...
T Consensus 74 gG~tW~~~~~~--~~~~~~~l~~v~~~~~~~~~~G~~------g~i~~S~DgG~tW~~~~~~---------~~~~~-~~~ 135 (334)
T PRK13684 74 GGETWEERSLD--LPEENFRLISISFKGDEGWIVGQP------SLLLHTTDGGKNWTRIPLS---------EKLPG-SPY 135 (334)
T ss_pred CCCCceECccC--CcccccceeeeEEcCCcEEEeCCC------ceEEEECCCCCCCeEccCC---------cCCCC-Cce
Confidence 45689987532 222222 22333345566766531 1233322223599998641 01111 122
Q ss_pred EEEEE-CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEE-
Q 010115 151 SLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHM- 228 (518)
Q Consensus 151 ~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~- 228 (518)
.+..+ ++.+|+.|... .+++-+-.-.+|+.+.. +..-.-+.+....+..++..|..+. ++.
T Consensus 136 ~i~~~~~~~~~~~g~~G-------~i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~G~------i~~s 198 (334)
T PRK13684 136 LITALGPGTAEMATNVG-------AIYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSSRGN------FYST 198 (334)
T ss_pred EEEEECCCcceeeeccc-------eEEEECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeCCce------EEEE
Confidence 23333 45566665432 46666666789998764 2233344455544444454443332 222
Q ss_pred EEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEE--EcCCCeEEEeecCCCCCCCCc-ceEE
Q 010115 229 FDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSL--DFETMIWTRIKIRGFHPSPRA-GCCG 305 (518)
Q Consensus 229 yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~y--d~~~~~W~~v~~~~~~p~~r~-~~~~ 305 (518)
.|....+|+.+. .+..+...+++...+..++++|... ..++ +-...+|+.+... . ..... .+++
T Consensus 199 ~~~gg~tW~~~~----~~~~~~l~~i~~~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~~~-~-~~~~~~l~~v 265 (334)
T PRK13684 199 WEPGQTAWTPHQ----RNSSRRLQSMGFQPDGNLWMLARGG-------QIRFNDPDDLESWSKPIIP-E-ITNGYGYLDL 265 (334)
T ss_pred cCCCCCeEEEee----CCCcccceeeeEcCCCCEEEEecCC-------EEEEccCCCCCccccccCC-c-cccccceeeE
Confidence 234446799884 3444555555555544478876431 2334 2234689976431 1 11112 2233
Q ss_pred EEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCC
Q 010115 306 VLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 374 (518)
Q Consensus 306 ~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~ 374 (518)
+.. ++.+|++|... .++.-.....+|+.+.... . .+...+.++... .+.+|+.|..+
T Consensus 266 ~~~~~~~~~~~G~~G------~v~~S~d~G~tW~~~~~~~-~--~~~~~~~~~~~~---~~~~~~~G~~G 323 (334)
T PRK13684 266 AYRTPGEIWAGGGNG------TLLVSKDGGKTWEKDPVGE-E--VPSNFYKIVFLD---PEKGFVLGQRG 323 (334)
T ss_pred EEcCCCCEEEEcCCC------eEEEeCCCCCCCeECCcCC-C--CCcceEEEEEeC---CCceEEECCCc
Confidence 333 66788887532 2444445567999865211 1 122334444443 35678888764
No 59
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.87 E-value=0.67 Score=47.44 Aligned_cols=188 Identities=16% Similarity=0.187 Sum_probs=102.2
Q ss_pred EEEEECCEEEEEcCcCCCCCCCcEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCC
Q 010115 93 AAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGS 170 (518)
Q Consensus 93 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~ 170 (518)
+.++.++.+|+.+. + ..++.+|..+. .|+..... ....+.+..++.+|+..+.
T Consensus 100 ~p~v~~~~v~v~~~-~-----g~l~ald~~tG~~~W~~~~~~--------------~~~~~p~v~~~~v~v~~~~----- 154 (377)
T TIGR03300 100 GVGADGGLVFVGTE-K-----GEVIALDAEDGKELWRAKLSS--------------EVLSPPLVANGLVVVRTND----- 154 (377)
T ss_pred ceEEcCCEEEEEcC-C-----CEEEEEECCCCcEeeeeccCc--------------eeecCCEEECCEEEEECCC-----
Confidence 34455677776443 2 46899998764 68754321 0112334457888875432
Q ss_pred CceeEEEEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCC--cEEEeecCCCCC
Q 010115 171 DRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL--TWLPLHCTGTGP 246 (518)
Q Consensus 171 ~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~g~~p 246 (518)
..++.+|+++++ |+...... ....+...+.+..++.+|+ |..+ ..+..+|+.+. .|+.-. ..+
T Consensus 155 --g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~~~~~v~~-~~~~------g~v~ald~~tG~~~W~~~~---~~~ 221 (377)
T TIGR03300 155 --GRLTALDAATGERLWTYSRVTP-ALTLRGSASPVIADGGVLV-GFAG------GKLVALDLQTGQPLWEQRV---ALP 221 (377)
T ss_pred --CeEEEEEcCCCceeeEEccCCC-ceeecCCCCCEEECCEEEE-ECCC------CEEEEEEccCCCEeeeecc---ccC
Confidence 258999998765 87543210 0011222334556666554 3322 35888998765 476432 111
Q ss_pred CC-----C---CCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC--eEEEeecCCCCCCCCcceEEEEECCEEEEEc
Q 010115 247 SP-----R---SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGFHPSPRAGCCGVLCGTKWYIAG 316 (518)
Q Consensus 247 ~~-----r---~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~G 316 (518)
.. | ...+.++.++. +|+... ...++.||+++. .|+.-. +. ..+.++.+++||+..
T Consensus 222 ~g~~~~~~~~~~~~~p~~~~~~-vy~~~~------~g~l~a~d~~tG~~~W~~~~-----~~---~~~p~~~~~~vyv~~ 286 (377)
T TIGR03300 222 KGRTELERLVDVDGDPVVDGGQ-VYAVSY------QGRVAALDLRSGRVLWKRDA-----SS---YQGPAVDDNRLYVTD 286 (377)
T ss_pred CCCCchhhhhccCCccEEECCE-EEEEEc------CCEEEEEECCCCcEEEeecc-----CC---ccCceEeCCEEEEEC
Confidence 11 1 11223334444 676542 135999998765 475431 11 123345688999874
Q ss_pred ccCCCCCcCeEEEEECCCC--ceEE
Q 010115 317 GGSRKKRHAETLIFDILKG--EWSV 339 (518)
Q Consensus 317 G~~~~~~~~~v~~yd~~~~--~W~~ 339 (518)
. ...++++|..++ .|+.
T Consensus 287 ~------~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 287 A------DGVVVALDRRSGSELWKN 305 (377)
T ss_pred C------CCeEEEEECCCCcEEEcc
Confidence 2 145899998775 4765
No 60
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.64 E-value=0.73 Score=44.70 Aligned_cols=186 Identities=12% Similarity=0.067 Sum_probs=88.9
Q ss_pred EEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE--ECCEEEEEcCcCCCCCCceeEEE
Q 010115 100 KMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS--WGKKVLLVGGKTDSGSDRVSVWT 177 (518)
Q Consensus 100 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~ 177 (518)
.+|+.++.+ +.+.+||+.+++-...-.. .... .+++. .+..+|+.++.. +.+..
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~----------~~~~---~~l~~~~dg~~l~~~~~~~------~~v~~ 57 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPV----------GQRP---RGITLSKDGKLLYVCASDS------DTIQV 57 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEEC----------CCCC---CceEECCCCCEEEEEECCC------CeEEE
Confidence 467766644 4788899877653322210 0001 12222 234577776542 35889
Q ss_pred EECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEE
Q 010115 178 FDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (518)
Q Consensus 178 yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~ 255 (518)
||+.+.+....-.. ...+ ..++.. ++.+|+.++.+ ..+..||+.+.+-... .+.......++
T Consensus 58 ~d~~~~~~~~~~~~--~~~~---~~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~~~~-----~~~~~~~~~~~ 121 (300)
T TIGR03866 58 IDLATGEVIGTLPS--GPDP---ELFALHPNGKILYIANEDD------NLVTVIDIETRKVLAE-----IPVGVEPEGMA 121 (300)
T ss_pred EECCCCcEEEeccC--CCCc---cEEEECCCCCEEEEEcCCC------CeEEEEECCCCeEEeE-----eeCCCCcceEE
Confidence 99988776542211 1111 222332 34566665422 3588899987542211 11111123344
Q ss_pred EECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCCC
Q 010115 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG 335 (518)
Q Consensus 256 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 335 (518)
...+..+++++..+. +.+..||.++.+-......+. +..+.+..-+++.+++++... ..+.+||+.+.
T Consensus 122 ~~~dg~~l~~~~~~~----~~~~~~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~~----~~v~i~d~~~~ 189 (300)
T TIGR03866 122 VSPDGKIVVNTSETT----NMAHFIDTKTYEIVDNVLVDQ----RPRFAEFTADGKELWVSSEIG----GTVSVIDVATR 189 (300)
T ss_pred ECCCCCEEEEEecCC----CeEEEEeCCCCeEEEEEEcCC----CccEEEECCCCCEEEEEcCCC----CEEEEEEcCcc
Confidence 444433566554322 246677876654322111111 111222222455444443222 35889999876
Q ss_pred ce
Q 010115 336 EW 337 (518)
Q Consensus 336 ~W 337 (518)
+.
T Consensus 190 ~~ 191 (300)
T TIGR03866 190 KV 191 (300)
T ss_pred ee
Confidence 54
No 61
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.63 E-value=0.81 Score=45.15 Aligned_cols=257 Identities=16% Similarity=0.177 Sum_probs=115.3
Q ss_pred CCCCeEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCCcEEEEEcC-CCcEEEcccccccCCCCCCCCCC-Ccc
Q 010115 72 NSENWMVLSIAGDKPIPRFNHAAAVI-GNKMIVVGGESGNGLLDDVQVLNFD-RFSWTAASSKLYLSPSSLPLKIP-ACR 148 (518)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~-~r~ 148 (518)
....|+.+. .|....-..+... .++-|++|-.. ...-..+ ..+|+..... ...+ ...
T Consensus 4 ~~~~W~~v~----l~t~~~l~dV~F~d~~~G~~VG~~g-------~il~T~DGG~tW~~~~~~---------~~~~~~~~ 63 (302)
T PF14870_consen 4 SGNSWQQVS----LPTDKPLLDVAFVDPNHGWAVGAYG-------TILKTTDGGKTWQPVSLD---------LDNPFDYH 63 (302)
T ss_dssp SS--EEEEE-----S-SS-EEEEEESSSS-EEEEETTT-------EEEEESSTTSS-EE--------------S-----E
T ss_pred cCCCcEEee----cCCCCceEEEEEecCCEEEEEecCC-------EEEEECCCCccccccccC---------CCccceee
Confidence 567899996 4544444455554 46788887532 2222222 3589988752 1111 123
Q ss_pred ceEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEE
Q 010115 149 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLH 227 (518)
Q Consensus 149 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~ 227 (518)
..++...++..|+.|-.. -+++-.-.-.+|++++....+| -..+.+.. -++.++++|.. ..++
T Consensus 64 l~~I~f~~~~g~ivG~~g-------~ll~T~DgG~tW~~v~l~~~lp--gs~~~i~~l~~~~~~l~~~~-------G~iy 127 (302)
T PF14870_consen 64 LNSISFDGNEGWIVGEPG-------LLLHTTDGGKTWERVPLSSKLP--GSPFGITALGDGSAELAGDR-------GAIY 127 (302)
T ss_dssp EEEEEEETTEEEEEEETT-------EEEEESSTTSS-EE----TT-S--S-EEEEEEEETTEEEEEETT---------EE
T ss_pred EEEEEecCCceEEEcCCc-------eEEEecCCCCCcEEeecCCCCC--CCeeEEEEcCCCcEEEEcCC-------CcEE
Confidence 344555678899886432 2455444567899987422233 33333333 45677777533 2344
Q ss_pred EEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEE-EEEcCCCeEEEeecCCCCCCCCcceEEE
Q 010115 228 MFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLY-SLDFETMIWTRIKIRGFHPSPRAGCCGV 306 (518)
Q Consensus 228 ~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~-~yd~~~~~W~~v~~~~~~p~~r~~~~~~ 306 (518)
+=.-.-.+|+.+.. -. ......+....+..+++.+.. ..++ ..|+....|+..... ..|.-.++.
T Consensus 128 ~T~DgG~tW~~~~~---~~-~gs~~~~~r~~dG~~vavs~~------G~~~~s~~~G~~~w~~~~r~----~~~riq~~g 193 (302)
T PF14870_consen 128 RTTDGGKTWQAVVS---ET-SGSINDITRSSDGRYVAVSSR------GNFYSSWDPGQTTWQPHNRN----SSRRIQSMG 193 (302)
T ss_dssp EESSTTSSEEEEE----S-----EEEEEE-TTS-EEEEETT------SSEEEEE-TT-SS-EEEE------SSS-EEEEE
T ss_pred EeCCCCCCeeEccc---CC-cceeEeEEECCCCcEEEEECc------ccEEEEecCCCccceEEccC----ccceehhce
Confidence 44444578998852 11 122223334455545555532 2344 567877889988763 334444444
Q ss_pred EE-CCEEEEEcccCCCCCcCeEEEEE--CCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEE
Q 010115 307 LC-GTKWYIAGGGSRKKRHAETLIFD--ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEV 383 (518)
Q Consensus 307 ~~-~~~iyv~GG~~~~~~~~~v~~yd--~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~ 383 (518)
.. ++.++++. ..+ .++.-+ -...+|++... +....++...-+.....+.+++.||.+ .+++
T Consensus 194 f~~~~~lw~~~-~Gg-----~~~~s~~~~~~~~w~~~~~-----~~~~~~~~~ld~a~~~~~~~wa~gg~G-----~l~~ 257 (302)
T PF14870_consen 194 FSPDGNLWMLA-RGG-----QIQFSDDPDDGETWSEPII-----PIKTNGYGILDLAYRPPNEIWAVGGSG-----TLLV 257 (302)
T ss_dssp E-TTS-EEEEE-TTT-----EEEEEE-TTEEEEE---B------TTSS--S-EEEEEESSSS-EEEEESTT------EEE
T ss_pred ecCCCCEEEEe-CCc-----EEEEccCCCCccccccccC-----CcccCceeeEEEEecCCCCEEEEeCCc-----cEEE
Confidence 44 67888765 222 255555 34567887321 223445555545555668899999976 3343
Q ss_pred EEcccCCcccc
Q 010115 384 LSIEKNESSMG 394 (518)
Q Consensus 384 yd~~~~~w~~~ 394 (518)
=.=..++|...
T Consensus 258 S~DgGktW~~~ 268 (302)
T PF14870_consen 258 STDGGKTWQKD 268 (302)
T ss_dssp ESSTTSS-EE-
T ss_pred eCCCCccceEC
Confidence 33344566654
No 62
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.57 E-value=0.026 Score=54.96 Aligned_cols=125 Identities=22% Similarity=0.282 Sum_probs=76.4
Q ss_pred EEEcCcCCCCC-CceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCCcEE
Q 010115 160 LLVGGKTDSGS-DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWL 237 (518)
Q Consensus 160 yv~GG~~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 237 (518)
||-|-....+. ....+-.||+.+.+|..+.. . -.. .-..+... +++||+.|-....+.....+-.||.++.+|+
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~--~-i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~ 77 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGN--G-ISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS 77 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCC--C-ceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee
Confidence 44444443333 46679999999999998764 1 111 11223333 6788888766555434567899999999999
Q ss_pred EeecC--CCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeec
Q 010115 238 PLHCT--GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292 (518)
Q Consensus 238 ~~~~~--g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~ 292 (518)
.+... ..+|.+.........+...+++.|.... -..-+..|| ..+|+.+..
T Consensus 78 ~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~--g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 78 SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSAN--GSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred ecCCcccccCCCcEEEEEeeccCCceEEEeceecC--CCceEEEEc--CCceEeccc
Confidence 98742 2355554332222234445777776522 223466775 778999866
No 63
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.27 E-value=0.18 Score=51.03 Aligned_cols=120 Identities=18% Similarity=0.235 Sum_probs=77.3
Q ss_pred ECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCccc----CcEEEE-
Q 010115 155 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKL----NDLHMF- 229 (518)
Q Consensus 155 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~----~~~~~y- 229 (518)
.+++|+..+... .+..||+++..-...+. ++.+.....++.++++||++.......... ..++.+
T Consensus 75 ~gskIv~~d~~~-------~t~vyDt~t~av~~~P~---l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~ 144 (342)
T PF07893_consen 75 HGSKIVAVDQSG-------RTLVYDTDTRAVATGPR---LHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALV 144 (342)
T ss_pred cCCeEEEEcCCC-------CeEEEECCCCeEeccCC---CCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEec
Confidence 589999986652 37899999998776664 666666667777899999998774431110 145554
Q ss_pred -E--------cCCCcEEEeecCCCCCCCCCC-------cEEEEECCcEEEE-EcCCCCCCCCCcEEEEEcCCCeEEEeec
Q 010115 230 -D--------LKSLTWLPLHCTGTGPSPRSN-------HVAALYDDKNLLI-FGGSSKSKTLNDLYSLDFETMIWTRIKI 292 (518)
Q Consensus 230 -d--------~~t~~W~~~~~~g~~p~~r~~-------~~~~~~~~~~lyv-~GG~~~~~~~~~v~~yd~~~~~W~~v~~ 292 (518)
+ .....|+.++ +.|..+.. .+-+++++..|+| .-|.. .-.|.||.++.+|+++..
T Consensus 145 ~~~~~~~~~~~~~w~W~~LP---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 145 YRPPPDDPSPEESWSWRSLP---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred cccccccccCCCcceEEcCC---CCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeeccc
Confidence 3 2234677775 33333322 2334455666777 33221 238999999999999954
No 64
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.25 E-value=0.14 Score=50.00 Aligned_cols=124 Identities=16% Similarity=0.255 Sum_probs=73.1
Q ss_pred EEEcccCCCCc-ccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCC-CCCcEEEEEcCCCeEE
Q 010115 211 ILFGGEDGKRR-KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSLDFETMIWT 288 (518)
Q Consensus 211 yv~GG~~~~~~-~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~ 288 (518)
||-|-++..+. ....+-.||+.+.+|..+. .--.+ .-..+...++..||+.|-..-.. ....+-.||.++.+|+
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g---~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~ 77 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPG---NGISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS 77 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCC---CCceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee
Confidence 44444444433 4677889999999999985 22111 12233444555577777553322 4566999999999999
Q ss_pred EeecC--CCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEeec
Q 010115 289 RIKIR--GFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 342 (518)
Q Consensus 289 ~v~~~--~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 342 (518)
.+... ...|.+-........ ..++++.|.... ...-+..| +..+|+.+..
T Consensus 78 ~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~--g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 78 SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSAN--GSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred ecCCcccccCCCcEEEEEeeccCCceEEEeceecC--CCceEEEE--cCCceEeccc
Confidence 98762 233444221111112 346787776522 22335555 5778999875
No 65
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.17 E-value=0.18 Score=50.94 Aligned_cols=117 Identities=17% Similarity=0.185 Sum_probs=76.2
Q ss_pred ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCC-----cEEEE
Q 010115 206 ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLN-----DLYSL 280 (518)
Q Consensus 206 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~-----~v~~y 280 (518)
.+++|+..+.. ..+.+||.++..-...+ .++.+.....++.++++ ||++.......... .++++
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~-LY~m~~~~~~~~~~~~~~~~FE~l 143 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDK-LYAMDRSPFPEPAGRPDFPCFEAL 143 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCe-EEEeeccCccccccCccceeEEEe
Confidence 58899988554 34889999998877665 56666777777788888 99998764321111 34444
Q ss_pred --E--------cCCCeEEEeecCCCCCCCCc-------ceEEEEE-CCEEEE-EcccCCCCCcCeEEEEECCCCceEEee
Q 010115 281 --D--------FETMIWTRIKIRGFHPSPRA-------GCCGVLC-GTKWYI-AGGGSRKKRHAETLIFDILKGEWSVAI 341 (518)
Q Consensus 281 --d--------~~~~~W~~v~~~~~~p~~r~-------~~~~~~~-~~~iyv-~GG~~~~~~~~~v~~yd~~~~~W~~~~ 341 (518)
+ .....|+.+++. |..+. -.+-+++ +..|+| .-|.. .-+|.||..+.+|+++.
T Consensus 144 ~~~~~~~~~~~~~~w~W~~LP~P---Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 144 VYRPPPDDPSPEESWSWRSLPPP---PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHG 215 (342)
T ss_pred ccccccccccCCCcceEEcCCCC---CccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeecc
Confidence 3 234467777553 33322 2333444 668888 44322 23899999999999986
No 66
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.15 E-value=1.5 Score=43.20 Aligned_cols=243 Identities=16% Similarity=0.259 Sum_probs=108.2
Q ss_pred CCCCeEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCCcEEEEEc-CCCcEEEcccccccCCCCCCCCCCCccce
Q 010115 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNF-DRFSWTAASSKLYLSPSSLPLKIPACRGH 150 (518)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~-~~~~W~~~~~~~~~~~~~~~~~~~~r~~~ 150 (518)
--.+|+.+....+.+......++...++..|+.|-. .+..... ...+|++++.. .+.|. ..+
T Consensus 45 GG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~-------g~ll~T~DgG~tW~~v~l~---------~~lpg-s~~ 107 (302)
T PF14870_consen 45 GGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP-------GLLLHTTDGGKTWERVPLS---------SKLPG-SPF 107 (302)
T ss_dssp TTSS-EE-----S-----EEEEEEEETTEEEEEEET-------TEEEEESSTTSS-EE-------------TT-SS--EE
T ss_pred CCccccccccCCCccceeeEEEEEecCCceEEEcCC-------ceEEEecCCCCCcEEeecC---------CCCCC-Cee
Confidence 457899886322222112233444567889988742 1222333 34699998742 12232 223
Q ss_pred EEEE-ECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCcccCcEEE
Q 010115 151 SLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHM 228 (518)
Q Consensus 151 ~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 228 (518)
.+.. -++.++++|... .+|+-.-.-.+|+.+.. +..-.-..+... ++.+++++-. +. -+..
T Consensus 108 ~i~~l~~~~~~l~~~~G-------~iy~T~DgG~tW~~~~~----~~~gs~~~~~r~~dG~~vavs~~-G~-----~~~s 170 (302)
T PF14870_consen 108 GITALGDGSAELAGDRG-------AIYRTTDGGKTWQAVVS----ETSGSINDITRSSDGRYVAVSSR-GN-----FYSS 170 (302)
T ss_dssp EEEEEETTEEEEEETT---------EEEESSTTSSEEEEE-----S----EEEEEE-TTS-EEEEETT-SS-----EEEE
T ss_pred EEEEcCCCcEEEEcCCC-------cEEEeCCCCCCeeEccc----CCcceeEeEEECCCCcEEEEECc-cc-----EEEE
Confidence 3433 467777776542 47776666778998764 112222223333 4565555432 21 1234
Q ss_pred EEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEE--cCCCeEEEeecCCCCCCCCcce--E
Q 010115 229 FDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLD--FETMIWTRIKIRGFHPSPRAGC--C 304 (518)
Q Consensus 229 yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd--~~~~~W~~v~~~~~~p~~r~~~--~ 304 (518)
.|+....|+... .+..|.--++....+..|++.. ..+ .+..-+ -...+|++... |....++ -
T Consensus 171 ~~~G~~~w~~~~----r~~~~riq~~gf~~~~~lw~~~-~Gg-----~~~~s~~~~~~~~w~~~~~----~~~~~~~~~l 236 (302)
T PF14870_consen 171 WDPGQTTWQPHN----RNSSRRIQSMGFSPDGNLWMLA-RGG-----QIQFSDDPDDGETWSEPII----PIKTNGYGIL 236 (302)
T ss_dssp E-TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEE-TTT-----EEEEEE-TTEEEEE---B-----TTSS--S-EE
T ss_pred ecCCCccceEEc----cCccceehhceecCCCCEEEEe-CCc-----EEEEccCCCCccccccccC----CcccCceeeE
Confidence 677778899884 4455666666666666576654 222 344444 34567877432 3322233 2
Q ss_pred -EEEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCC
Q 010115 305 -GVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 374 (518)
Q Consensus 305 -~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~ 374 (518)
++.. ++.+++.||.. .+++-.-..++|++..... ..+---+.++.+. .++-||+|-.+
T Consensus 237 d~a~~~~~~~wa~gg~G------~l~~S~DgGktW~~~~~~~---~~~~n~~~i~f~~---~~~gf~lG~~G 296 (302)
T PF14870_consen 237 DLAYRPPNEIWAVGGSG------TLLVSTDGGKTWQKDRVGE---NVPSNLYRIVFVN---PDKGFVLGQDG 296 (302)
T ss_dssp EEEESSSS-EEEEESTT-------EEEESSTTSS-EE-GGGT---TSSS---EEEEEE---TTEEEEE-STT
T ss_pred EEEecCCCCEEEEeCCc------cEEEeCCCCccceECcccc---CCCCceEEEEEcC---CCceEEECCCc
Confidence 2332 67899998853 2666666778999975321 1122224444443 35678888653
No 67
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=96.09 E-value=1.2 Score=42.62 Aligned_cols=189 Identities=14% Similarity=0.130 Sum_probs=103.6
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECC-----CCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEE
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTE-----TECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFD 230 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~-----t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd 230 (518)
.+++|++.|.... .+++|... .+.....-. +|.+-.|.+.+++++.+|..-. ..+.+.+||
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~~---Lp~~~~GtG~vVYngslYY~~~------~s~~Ivkyd 95 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTYK---LPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYD 95 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEEE---EeceeccCCeEEECCcEEEEec------CCceEEEEE
Confidence 5789999887542 56666432 233333332 7777788888899999998632 357899999
Q ss_pred cCCCcEE-EeecCCCCCCCCCC------------cEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCC
Q 010115 231 LKSLTWL-PLHCTGTGPSPRSN------------HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHP 297 (518)
Q Consensus 231 ~~t~~W~-~~~~~g~~p~~r~~------------~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p 297 (518)
+.+..-. .. .+|.+... .-.++-+++ |+|+=......-.--|-++|+++..-++--... .+
T Consensus 96 L~t~~v~~~~----~L~~A~~~n~~~y~~~~~t~iD~AvDE~G-LWvIYat~~~~g~ivvskld~~tL~v~~tw~T~-~~ 169 (250)
T PF02191_consen 96 LTTRSVVARR----ELPGAGYNNRFPYYWSGYTDIDFAVDENG-LWVIYATEDNNGNIVVSKLDPETLSVEQTWNTS-YP 169 (250)
T ss_pred CcCCcEEEEE----ECCccccccccceecCCCceEEEEEcCCC-EEEEEecCCCCCcEEEEeeCcccCceEEEEEec-cC
Confidence 9988755 32 22222221 123444556 555533322211123456676654322222221 12
Q ss_pred CCCcceEEEEECCEEEEEcccCCCCCcCeE-EEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEc
Q 010115 298 SPRAGCCGVLCGTKWYIAGGGSRKKRHAET-LIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFG 371 (518)
Q Consensus 298 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v-~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~G 371 (518)
. +....+.++-|.||++...+... ..| +.||+.+++=..+.. ..+..-...+++-.. +.+.+||+.-
T Consensus 170 k-~~~~naFmvCGvLY~~~s~~~~~--~~I~yafDt~t~~~~~~~i---~f~~~~~~~~~l~YN-P~dk~LY~wd 237 (250)
T PF02191_consen 170 K-RSAGNAFMVCGVLYATDSYDTRD--TEIFYAFDTYTGKEEDVSI---PFPNPYGNISMLSYN-PRDKKLYAWD 237 (250)
T ss_pred c-hhhcceeeEeeEEEEEEECCCCC--cEEEEEEECCCCceeceee---eeccccCceEeeeEC-CCCCeEEEEE
Confidence 2 23334566688999987665432 344 799999877655431 122222334444443 3345677653
No 68
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.83 E-value=3.2 Score=44.21 Aligned_cols=144 Identities=13% Similarity=0.136 Sum_probs=74.1
Q ss_pred CCCCeEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCCcEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccc
Q 010115 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRG 149 (518)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~ 149 (518)
.+..|+.-.. . ......+.++.++.+|+.... ..++.+|..+. .|+.-....... ..+....
T Consensus 39 ~~~~W~~~~~--~--~~~~~~sPvv~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~~~------~~~~~~~ 102 (488)
T cd00216 39 LKVAWTFSTG--D--ERGQEGTPLVVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPADR------GCCDVVN 102 (488)
T ss_pred ceeeEEEECC--C--CCCcccCCEEECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCccc------ccccccc
Confidence 4457864321 1 123334456778999986542 46889998764 687744311000 0001111
Q ss_pred eEEEEEC-CEEEEEcCcCCCCCCceeEEEEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCC---ccc
Q 010115 150 HSLISWG-KKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR---RKL 223 (518)
Q Consensus 150 ~~~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~---~~~ 223 (518)
...+..+ ++||+.... ..++.+|.+|.+ |+.-......+......+.++.++.+|+ |..+... ...
T Consensus 103 ~g~~~~~~~~V~v~~~~-------g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~ 174 (488)
T cd00216 103 RGVAYWDPRKVFFGTFD-------GRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVR 174 (488)
T ss_pred CCcEEccCCeEEEecCC-------CeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCC
Confidence 2234445 788875321 268999998765 8764321000000112233455666664 4322210 123
Q ss_pred CcEEEEEcCCC--cEEEe
Q 010115 224 NDLHMFDLKSL--TWLPL 239 (518)
Q Consensus 224 ~~~~~yd~~t~--~W~~~ 239 (518)
..++.+|.++. .|+.-
T Consensus 175 g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 175 GALRAYDVETGKLLWRFY 192 (488)
T ss_pred cEEEEEECCCCceeeEee
Confidence 56899999875 48754
No 69
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.74 E-value=1.8 Score=40.69 Aligned_cols=212 Identities=19% Similarity=0.236 Sum_probs=115.5
Q ss_pred cEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceE--EEEECCEEEEEcCcCCCCCCceeEEEEECCCCc--EEEe
Q 010115 115 DVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHS--LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVV 188 (518)
Q Consensus 115 ~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~ 188 (518)
.+..+|+.+. .|+.-.. . ...+.. .+..++.+|+..+. ..++.+|+.+++ |+.-
T Consensus 4 ~l~~~d~~tG~~~W~~~~~------------~-~~~~~~~~~~~~~~~v~~~~~~-------~~l~~~d~~tG~~~W~~~ 63 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLG------------P-GIGGPVATAVPDGGRVYVASGD-------GNLYALDAKTGKVLWRFD 63 (238)
T ss_dssp EEEEEETTTTEEEEEEECS------------S-SCSSEEETEEEETTEEEEEETT-------SEEEEEETTTSEEEEEEE
T ss_pred EEEEEECCCCCEEEEEECC------------C-CCCCccceEEEeCCEEEEEcCC-------CEEEEEECCCCCEEEEee
Confidence 4677888665 5777321 1 112222 34478999998432 369999998886 7664
Q ss_pred eecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCC--cEEE-eecCCCCCCCCCCcEEEEECCcEEEEE
Q 010115 189 EAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL--TWLP-LHCTGTGPSPRSNHVAALYDDKNLLIF 265 (518)
Q Consensus 189 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~-~~~~g~~p~~r~~~~~~~~~~~~lyv~ 265 (518)
. +. +.....+..++.+|+..+ -+.++.+|..+. .|+. .......+ .+......+.++. +|+.
T Consensus 64 ~-----~~-~~~~~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~ 128 (238)
T PF13360_consen 64 L-----PG-PISGAPVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDR-LYVG 128 (238)
T ss_dssp C-----SS-CGGSGEEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTE-EEEE
T ss_pred c-----cc-cccceeeecccccccccc-------eeeeEecccCCcceeeeeccccccccc-cccccCceEecCE-EEEE
Confidence 3 22 222224778899988752 126899997765 4984 43111111 2223333344444 5554
Q ss_pred cCCCCCCCCCcEEEEEcCCCe--EEEeecCCCCCC-----CCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCc--
Q 010115 266 GGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPS-----PRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE-- 336 (518)
Q Consensus 266 GG~~~~~~~~~v~~yd~~~~~--W~~v~~~~~~p~-----~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~-- 336 (518)
.. ...++.+|+++++ |+.-...+.... .......+..++.+|+..+... +..+|..+++
T Consensus 129 ~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~------~~~~d~~tg~~~ 196 (238)
T PF13360_consen 129 TS------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR------VVAVDLATGEKL 196 (238)
T ss_dssp ET------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS------EEEEETTTTEEE
T ss_pred ec------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe------EEEEECCCCCEE
Confidence 42 2469999998664 666443211000 0111233334678888876432 6667999987
Q ss_pred eEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 337 WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 337 W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
|+... . . ....... ..+.||+.. .. ..+.++|+.+.+
T Consensus 197 w~~~~----~---~---~~~~~~~--~~~~l~~~~-~~----~~l~~~d~~tG~ 233 (238)
T PF13360_consen 197 WSKPI----S---G---IYSLPSV--DGGTLYVTS-SD----GRLYALDLKTGK 233 (238)
T ss_dssp EEECS----S-------ECECEEC--CCTEEEEEE-TT----TEEEEEETTTTE
T ss_pred EEecC----C---C---ccCCcee--eCCEEEEEe-CC----CEEEEEECCCCC
Confidence 84421 1 0 1111111 235666665 22 378999998875
No 70
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.74 E-value=0.45 Score=48.23 Aligned_cols=153 Identities=18% Similarity=0.273 Sum_probs=83.6
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEEEE
Q 010115 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTF 178 (518)
Q Consensus 99 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~y 178 (518)
-.+.+.+|.++ .+.+|..+..+=..+..+- +.-.+-........+....+++|... -+|.|
T Consensus 225 ~plllvaG~d~-----~lrifqvDGk~N~~lqS~~--------l~~fPi~~a~f~p~G~~~i~~s~rrk------y~ysy 285 (514)
T KOG2055|consen 225 APLLLVAGLDG-----TLRIFQVDGKVNPKLQSIH--------LEKFPIQKAEFAPNGHSVIFTSGRRK------YLYSY 285 (514)
T ss_pred CceEEEecCCC-----cEEEEEecCccChhheeee--------eccCccceeeecCCCceEEEecccce------EEEEe
Confidence 45889999774 3444544433222443311 00011111222222343777777642 48999
Q ss_pred ECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEEC
Q 010115 179 DTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD 258 (518)
Q Consensus 179 d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~ 258 (518)
|+++.+-+++.+...++..-...--+...+.++++-|..+ .++.+..+|+.|-.-- .++..... .+...+
T Consensus 286 Dle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G------~I~lLhakT~eli~s~---KieG~v~~-~~fsSd 355 (514)
T KOG2055|consen 286 DLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG------HIHLLHAKTKELITSF---KIEGVVSD-FTFSSD 355 (514)
T ss_pred eccccccccccCCCCcccchhheeEecCCCCeEEEcccCc------eEEeehhhhhhhhhee---eeccEEee-EEEecC
Confidence 9999999998864444422111112334455666666544 3777777888774321 22222222 222345
Q ss_pred CcEEEEEcCCCCCCCCCcEEEEEcCCCe
Q 010115 259 DKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (518)
Q Consensus 259 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (518)
++.|++.||++ .||.+|+..+.
T Consensus 356 sk~l~~~~~~G------eV~v~nl~~~~ 377 (514)
T KOG2055|consen 356 SKELLASGGTG------EVYVWNLRQNS 377 (514)
T ss_pred CcEEEEEcCCc------eEEEEecCCcc
Confidence 67799998864 69999998773
No 71
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.62 E-value=0.98 Score=45.87 Aligned_cols=151 Identities=13% Similarity=0.151 Sum_probs=88.8
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeec--CCCCCCCcceEEEEECCE-EEEEcccCCCCcccCcEEEEEcC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK--GDIPVARSGHTVVRASSV-LILFGGEDGKRRKLNDLHMFDLK 232 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~yd~~ 232 (518)
.-.+.+.+|.+. .-.+|..|-+++. .+... ...|. .. +...-+|. ..+++|+.. -++.||+.
T Consensus 224 ~~plllvaG~d~----~lrifqvDGk~N~--~lqS~~l~~fPi--~~-a~f~p~G~~~i~~s~rrk------y~ysyDle 288 (514)
T KOG2055|consen 224 TAPLLLVAGLDG----TLRIFQVDGKVNP--KLQSIHLEKFPI--QK-AEFAPNGHSVIFTSGRRK------YLYSYDLE 288 (514)
T ss_pred CCceEEEecCCC----cEEEEEecCccCh--hheeeeeccCcc--ce-eeecCCCceEEEecccce------EEEEeecc
Confidence 356888899864 2357777777776 22210 01222 11 12222444 677776543 38999999
Q ss_pred CCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEE-EECCE
Q 010115 233 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV-LCGTK 311 (518)
Q Consensus 233 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~-~~~~~ 311 (518)
+.+-+++.....++..-...-.+...+. ++++-|.++ -|+.+...+++|-.--.. .++....+. ..+..
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G-----~I~lLhakT~eli~s~Ki----eG~v~~~~fsSdsk~ 358 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNG-----HIHLLHAKTKELITSFKI----EGVVSDFTFSSDSKE 358 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCC-eEEEcccCc-----eEEeehhhhhhhhheeee----ccEEeeEEEecCCcE
Confidence 9999999755445533333334455666 667766654 488888888888543222 122111111 12456
Q ss_pred EEEEcccCCCCCcCeEEEEECCCCce
Q 010115 312 WYIAGGGSRKKRHAETLIFDILKGEW 337 (518)
Q Consensus 312 iyv~GG~~~~~~~~~v~~yd~~~~~W 337 (518)
||+.||+. +||++|+..+.-
T Consensus 359 l~~~~~~G------eV~v~nl~~~~~ 378 (514)
T KOG2055|consen 359 LLASGGTG------EVYVWNLRQNSC 378 (514)
T ss_pred EEEEcCCc------eEEEEecCCcce
Confidence 78887753 599999988743
No 72
>PRK13684 Ycf48-like protein; Provisional
Probab=95.49 E-value=3.2 Score=41.79 Aligned_cols=243 Identities=16% Similarity=0.154 Sum_probs=118.8
Q ss_pred CCCCCeEEeccCCCCCCCccceEEEEEC-CEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccc
Q 010115 71 GNSENWMVLSIAGDKPIPRFNHAAAVIG-NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRG 149 (518)
Q Consensus 71 ~~~~~W~~l~~~~~~p~~R~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~ 149 (518)
.....|+.+. .|....-..++..+ ++.|++|-. ..+++=.=...+|++.... .+......
T Consensus 32 ~~~~~W~~~~----~~~~~~l~~v~F~d~~~g~avG~~------G~il~T~DgG~tW~~~~~~---------~~~~~~~l 92 (334)
T PRK13684 32 LSSSPWQVID----LPTEANLLDIAFTDPNHGWLVGSN------RTLLETNDGGETWEERSLD---------LPEENFRL 92 (334)
T ss_pred ccCCCcEEEe----cCCCCceEEEEEeCCCcEEEEECC------CEEEEEcCCCCCceECccC---------Ccccccce
Confidence 3667898885 34333334444444 567777731 1233222234689987642 11111122
Q ss_pred eEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCcccCcEEE
Q 010115 150 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHM 228 (518)
Q Consensus 150 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 228 (518)
.++...++..|+.|... .+++=+-.-.+|+.+......|. .......+ ++.+++.|.. ..+++
T Consensus 93 ~~v~~~~~~~~~~G~~g-------~i~~S~DgG~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~g~~-------G~i~~ 156 (334)
T PRK13684 93 ISISFKGDEGWIVGQPS-------LLLHTTDGGKNWTRIPLSEKLPG--SPYLITALGPGTAEMATNV-------GAIYR 156 (334)
T ss_pred eeeEEcCCcEEEeCCCc-------eEEEECCCCCCCeEccCCcCCCC--CceEEEEECCCcceeeecc-------ceEEE
Confidence 33333455667665321 25554334568998863111222 22223333 3456655432 23444
Q ss_pred EEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEE-EcCCCeEEEeecCCCCCCCCcceEEEE
Q 010115 229 FDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSL-DFETMIWTRIKIRGFHPSPRAGCCGVL 307 (518)
Q Consensus 229 yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~y-d~~~~~W~~v~~~~~~p~~r~~~~~~~ 307 (518)
-+-.-.+|+.+.. +..-..+.+....+..+++.|. .+ .++.- |....+|+.+.. +..+.-.+++.
T Consensus 157 S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~-~G-----~i~~s~~~gg~tW~~~~~----~~~~~l~~i~~ 222 (334)
T PRK13684 157 TTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSS-RG-----NFYSTWEPGQTAWTPHQR----NSSRRLQSMGF 222 (334)
T ss_pred ECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeC-Cc-----eEEEEcCCCCCeEEEeeC----CCcccceeeeE
Confidence 4445679998852 2233344555556663444443 22 34443 444568999854 23344444444
Q ss_pred E-CCEEEEEcccCCCCCcCeEEEE--ECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCC
Q 010115 308 C-GTKWYIAGGGSRKKRHAETLIF--DILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 374 (518)
Q Consensus 308 ~-~~~iyv~GG~~~~~~~~~v~~y--d~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~ 374 (518)
. +++++++|... ..++ +-...+|+.+.. |. .....+...+.+. ..+.++++|..+
T Consensus 223 ~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~~-~~--~~~~~~l~~v~~~--~~~~~~~~G~~G 280 (334)
T PRK13684 223 QPDGNLWMLARGG-------QIRFNDPDDLESWSKPII-PE--ITNGYGYLDLAYR--TPGEIWAGGGNG 280 (334)
T ss_pred cCCCCEEEEecCC-------EEEEccCCCCCccccccC-Cc--cccccceeeEEEc--CCCCEEEEcCCC
Confidence 3 67888887532 2333 234468997542 11 1111222323332 234588877653
No 73
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.48 E-value=4 Score=42.92 Aligned_cols=148 Identities=12% Similarity=0.125 Sum_probs=81.3
Q ss_pred eeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCc
Q 010115 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (518)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~ 252 (518)
..+|.+|+.+++-+.+.. .+..-......-.+..|++....++ ..+++.+|+.+.+.+.+... . .....
T Consensus 242 ~~L~~~dl~tg~~~~lt~---~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~---~-~~~~~ 310 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTS---FPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRH---R-AIDTE 310 (448)
T ss_pred cEEEEEECCCCCeEEecC---CCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccC---C-CCccc
Confidence 479999999887766653 2221111111123345665543332 25799999999988877521 1 11111
Q ss_pred EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECC-EEEEEcccCCCCCcCeEEEEE
Q 010115 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGT-KWYIAGGGSRKKRHAETLIFD 331 (518)
Q Consensus 253 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd 331 (518)
....-+++.|++.....+ ..++|.+|+++++++++...+.. .......-++ .|++.+ ... ....++.+|
T Consensus 311 p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~-~~~--g~~~I~~~d 380 (448)
T PRK04792 311 PSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEGEQ----NLGGSITPDGRSMIMVN-RTN--GKFNIARQD 380 (448)
T ss_pred eEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEecCCCC----CcCeeECCCCCEEEEEE-ecC--CceEEEEEE
Confidence 122234554444432222 25799999999999888643211 1111222244 455543 222 224689999
Q ss_pred CCCCceEEee
Q 010115 332 ILKGEWSVAI 341 (518)
Q Consensus 332 ~~~~~W~~~~ 341 (518)
+.+...+.+.
T Consensus 381 l~~g~~~~lt 390 (448)
T PRK04792 381 LETGAMQVLT 390 (448)
T ss_pred CCCCCeEEcc
Confidence 9999887765
No 74
>smart00284 OLF Olfactomedin-like domains.
Probab=95.18 E-value=3.1 Score=39.82 Aligned_cols=162 Identities=14% Similarity=0.067 Sum_probs=88.9
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEE----CCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEc
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFD----TETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL 231 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd----~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~ 231 (518)
++++|++.+... ..+.++.|. +....+.+.-. +|.+-.|.+.+++++.+|..-. ..+.+.+||+
T Consensus 34 ~~~~wv~~~~~~---~~~~v~ey~~~~~f~~~~~~~~~~---Lp~~~~GtG~VVYngslYY~~~------~s~~iiKydL 101 (255)
T smart00284 34 KSLYWYMPLNTR---VLRSVREYSSMSDFQMGKNPTDHP---LPHAGQGTGVVVYNGSLYFNKF------NSHDICRFDL 101 (255)
T ss_pred CceEEEEccccC---CCcEEEEecCHHHHhccCCceEEE---CCCccccccEEEECceEEEEec------CCccEEEEEC
Confidence 578898876531 223566764 33444444332 7888888889999999998532 2467999999
Q ss_pred CCCcEEEeecCCCCCCCC----C-----C---cEEEEECCcEEEEE-cCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCC
Q 010115 232 KSLTWLPLHCTGTGPSPR----S-----N---HVAALYDDKNLLIF-GGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS 298 (518)
Q Consensus 232 ~t~~W~~~~~~g~~p~~r----~-----~---~~~~~~~~~~lyv~-GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~ 298 (518)
.+.+-.... .+|.+. + . .=.++-+++ |+|+ ....... .--|-++|+.+..-.+.-..+ .+.
T Consensus 102 ~t~~v~~~~---~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~G-LWvIYat~~~~g-~ivvSkLnp~tL~ve~tW~T~-~~k 175 (255)
T smart00284 102 TTETYQKEP---LLNGAGYNNRFPYAWGGFSDIDLAVDENG-LWVIYATEQNAG-KIVISKLNPATLTIENTWITT-YNK 175 (255)
T ss_pred CCCcEEEEE---ecCccccccccccccCCCccEEEEEcCCc-eEEEEeccCCCC-CEEEEeeCcccceEEEEEEcC-CCc
Confidence 998765433 233221 1 1 112344455 4444 2211111 112346777665443333331 122
Q ss_pred CCcceEEEEECCEEEEEcccCCCCCcCeE-EEEECCCCceE
Q 010115 299 PRAGCCGVLCGTKWYIAGGGSRKKRHAET-LIFDILKGEWS 338 (518)
Q Consensus 299 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~v-~~yd~~~~~W~ 338 (518)
+....+.++=|.||++-... ..-.+| +.||..+.+=.
T Consensus 176 -~sa~naFmvCGvLY~~~s~~--~~~~~I~yayDt~t~~~~ 213 (255)
T smart00284 176 -RSASNAFMICGILYVTRSLG--SKGEKVFYAYDTNTGKEG 213 (255)
T ss_pred -ccccccEEEeeEEEEEccCC--CCCcEEEEEEECCCCccc
Confidence 22334566678999985311 112334 79999886633
No 75
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.32 E-value=7.5 Score=40.24 Aligned_cols=255 Identities=11% Similarity=0.055 Sum_probs=125.5
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCC-----C
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGS-----D 171 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~-----~ 171 (518)
+++.++++=..+..-...++++|+.++....-.. +...+..++-. +++.+++........ .
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-------------~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-------------ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-------------EEEESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-------------cccccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 4555454422222223568999999984433221 11122222222 334555544433222 2
Q ss_pred ceeEEEEECCCCcEE--EeeecCCCCCCCc-ceEEEE-ECC-EEEEEcccCCCCcccCcEEEEEcCCC-----cEEEeec
Q 010115 172 RVSVWTFDTETECWS--VVEAKGDIPVARS-GHTVVR-ASS-VLILFGGEDGKRRKLNDLHMFDLKSL-----TWLPLHC 241 (518)
Q Consensus 172 ~~~v~~yd~~t~~W~--~~~~~~~~p~~r~-~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~-----~W~~~~~ 241 (518)
...|+++...+..-+ .+-. .+.... ...+.. -++ .|++.-.... . .++++..|.... .|..+..
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe---~~~~~~~~~~~~~s~d~~~l~i~~~~~~--~-~s~v~~~d~~~~~~~~~~~~~l~~ 274 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFE---EPDEPFWFVSVSRSKDGRYLFISSSSGT--S-ESEVYLLDLDDGGSPDAKPKLLSP 274 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC----TTCTTSEEEEEE-TTSSEEEEEEESSS--S-EEEEEEEECCCTTTSS-SEEEEEE
T ss_pred CcEEEEEECCCChHhCeeEEe---ecCCCcEEEEEEecCcccEEEEEEEccc--c-CCeEEEEeccccCCCcCCcEEEeC
Confidence 567999998887654 2221 222222 222222 233 3343322221 1 378999999875 8988852
Q ss_pred CCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCe---EEEeecCCCCCCC-CcceEEEEECCEEEEEcc
Q 010115 242 TGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI---WTRIKIRGFHPSP-RAGCCGVLCGTKWYIAGG 317 (518)
Q Consensus 242 ~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~---W~~v~~~~~~p~~-r~~~~~~~~~~~iyv~GG 317 (518)
+..-..+.+...++. +|+.... ......|.++++.... |..+-.. +.. ..-..+...++.|++.-=
T Consensus 275 ----~~~~~~~~v~~~~~~-~yi~Tn~--~a~~~~l~~~~l~~~~~~~~~~~l~~---~~~~~~l~~~~~~~~~Lvl~~~ 344 (414)
T PF02897_consen 275 ----REDGVEYYVDHHGDR-LYILTND--DAPNGRLVAVDLADPSPAEWWTVLIP---EDEDVSLEDVSLFKDYLVLSYR 344 (414)
T ss_dssp ----SSSS-EEEEEEETTE-EEEEE-T--T-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTEEEEEEE
T ss_pred ----CCCceEEEEEccCCE-EEEeeCC--CCCCcEEEEecccccccccceeEEcC---CCCceeEEEEEEECCEEEEEEE
Confidence 112122223334555 8887653 2334679999987665 7743322 222 233344456888887643
Q ss_pred cCCCCCcCeEEEEECC-CCceEEeecCCCCCCCCCCCceEEEE-eeCCccEEEEEcCCCCCCCCcEEEEEcccCCccc
Q 010115 318 GSRKKRHAETLIFDIL-KGEWSVAITSPSSSVTSNKGFTLVLV-QHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSM 393 (518)
Q Consensus 318 ~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~~~~~r~~~s~~~~-~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~w~~ 393 (518)
.+ ....+.++|+. +..-..++. +..+...... ........|.+.+..... .++.||+.+++...
T Consensus 345 ~~---~~~~l~v~~~~~~~~~~~~~~-------p~~g~v~~~~~~~~~~~~~~~~ss~~~P~--~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 345 EN---GSSRLRVYDLDDGKESREIPL-------PEAGSVSGVSGDFDSDELRFSYSSFTTPP--TVYRYDLATGELTL 410 (414)
T ss_dssp ET---TEEEEEEEETT-TEEEEEEES-------SSSSEEEEEES-TT-SEEEEEEEETTEEE--EEEEEETTTTCEEE
T ss_pred EC---CccEEEEEECCCCcEEeeecC-------CcceEEeccCCCCCCCEEEEEEeCCCCCC--EEEEEECCCCCEEE
Confidence 22 24678999998 433333331 1112111111 122334455566765433 89999999887543
No 76
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=94.15 E-value=4.6 Score=37.11 Aligned_cols=152 Identities=14% Similarity=0.173 Sum_probs=78.0
Q ss_pred EEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcE--EEeeec-CCCCCCCcceEEEEEC-CEEEEEcccCCCCcccCcE
Q 010115 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECW--SVVEAK-GDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDL 226 (518)
Q Consensus 151 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W--~~~~~~-~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~ 226 (518)
+++...+++|+|-|. .+|+++...... ..+... ..+|. ....+..... +++|+|-| +..
T Consensus 11 A~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg--------~~y 73 (194)
T cd00094 11 AVTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKG--------DKY 73 (194)
T ss_pred eEEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECC--------CEE
Confidence 445556999999774 488888652221 112110 11232 2332322223 79999955 347
Q ss_pred EEEEcCCCcEEE---eecCCCCCC--CCCCcEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCeEEE-----eecCCC
Q 010115 227 HMFDLKSLTWLP---LHCTGTGPS--PRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-----IKIRGF 295 (518)
Q Consensus 227 ~~yd~~t~~W~~---~~~~g~~p~--~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-----v~~~~~ 295 (518)
|+|+..+..+.- +... ..|. .... ++.... ++.+|+|.| +..|+||...++... +...-
T Consensus 74 w~~~~~~~~~~~Pk~i~~~-~~~~~~~~iD-AA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w- 143 (194)
T cd00094 74 WVYTGKNLEPGYPKPISDL-GFPPTVKQID-AALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDF- 143 (194)
T ss_pred EEEcCcccccCCCcchhhc-CCCCCCCCcc-EEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcC-
Confidence 788765422211 1100 1121 2222 233333 345999987 468999976554321 11000
Q ss_pred CCCCCcceEEEEEC-CEEEEEcccCCCCCcCeEEEEECCCCc
Q 010115 296 HPSPRAGCCGVLCG-TKWYIAGGGSRKKRHAETLIFDILKGE 336 (518)
Q Consensus 296 ~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~~~ 336 (518)
+-.+..-.++.... +++|++-| +..|+||..+.+
T Consensus 144 ~g~p~~idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 144 PGVPDKVDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred CCcCCCcceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 01111123344444 89999987 468999988766
No 77
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=93.95 E-value=8.8 Score=39.63 Aligned_cols=148 Identities=16% Similarity=0.109 Sum_probs=80.6
Q ss_pred eeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCc
Q 010115 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (518)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~ 252 (518)
..++++|+.+++-..+.. .+......+....+..|++....++ ..+++.+|+.+...+.+... +.... .
T Consensus 214 ~~i~v~d~~~g~~~~~~~---~~~~~~~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~---~~~~~-~ 282 (417)
T TIGR02800 214 PEIYVQDLATGQREKVAS---FPGMNGAPAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNG---PGIDT-E 282 (417)
T ss_pred cEEEEEECCCCCEEEeec---CCCCccceEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCC---CCCCC-C
Confidence 479999999887666553 2222222111112345665533322 25799999998887777521 11111 1
Q ss_pred EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEE-ECCEEEEEcccCCCCCcCeEEEEE
Q 010115 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLIFD 331 (518)
Q Consensus 253 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd 331 (518)
....-+++.|++.....+ ..++|.+|..+..++.+...+ ........ -+++.+++..... ....++.+|
T Consensus 283 ~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~--~~~~i~~~d 352 (417)
T TIGR02800 283 PSWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHREG--GGFNIAVMD 352 (417)
T ss_pred EEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEccC--CceEEEEEe
Confidence 111224554444433222 247999999988888776432 11122222 2555555544332 234689999
Q ss_pred CCCCceEEee
Q 010115 332 ILKGEWSVAI 341 (518)
Q Consensus 332 ~~~~~W~~~~ 341 (518)
+.+..++.+.
T Consensus 353 ~~~~~~~~l~ 362 (417)
T TIGR02800 353 LDGGGERVLT 362 (417)
T ss_pred CCCCCeEEcc
Confidence 9987777665
No 78
>PRK05137 tolB translocation protein TolB; Provisional
Probab=93.88 E-value=9.6 Score=39.85 Aligned_cols=193 Identities=7% Similarity=-0.049 Sum_probs=96.2
Q ss_pred CcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCC
Q 010115 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 193 (518)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~ 193 (518)
..++++|+.+...+.+... +. .....+....+.+|++.....+ ..++|.+|+.+..-+.+..
T Consensus 226 ~~i~~~dl~~g~~~~l~~~----------~g-~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~--- 287 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNF----------PG-MTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTD--- 287 (435)
T ss_pred CEEEEEECCCCcEEEeecC----------CC-cccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccC---
Confidence 5789999988877766541 10 0011112222445555433221 2479999999988776653
Q ss_pred CCCCCcceEEEEECC-EEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCC
Q 010115 194 IPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK 272 (518)
Q Consensus 194 ~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~ 272 (518)
.+.. .......-++ .|+......+ ...+|++|..+...+.+.. . ..........-+++.|++... ...
T Consensus 288 ~~~~-~~~~~~spDG~~i~f~s~~~g----~~~Iy~~d~~g~~~~~lt~---~-~~~~~~~~~SpdG~~ia~~~~-~~~- 356 (435)
T PRK05137 288 SPAI-DTSPSYSPDGSQIVFESDRSG----SPQLYVMNADGSNPRRISF---G-GGRYSTPVWSPRGDLIAFTKQ-GGG- 356 (435)
T ss_pred CCCc-cCceeEcCCCCEEEEEECCCC----CCeEEEEECCCCCeEEeec---C-CCcccCeEECCCCCEEEEEEc-CCC-
Confidence 1111 1111222234 4443321211 2579999998887777752 1 122222222334554444332 111
Q ss_pred CCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCC-CcCeEEEEECCCCceEEee
Q 010115 273 TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK-RHAETLIFDILKGEWSVAI 341 (518)
Q Consensus 273 ~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~ 341 (518)
...++.+|+++...+.+... . ........-+++.+++-...... ....++.+|+++..-+.+.
T Consensus 357 -~~~i~~~d~~~~~~~~lt~~---~--~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 357 -QFSIGVMKPDGSGERILTSG---F--LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred -ceEEEEEECCCCceEeccCC---C--CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 24789999877766555432 1 11111222245544443322211 1246899998877666554
No 79
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=93.83 E-value=5.8 Score=37.14 Aligned_cols=188 Identities=12% Similarity=0.122 Sum_probs=85.1
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 234 (518)
++..+++++.. ..+..||..+.+....-. .. ...-.++... ++.+++.|+.+ ..+..||+.+.
T Consensus 62 ~~~~l~~~~~~------~~i~i~~~~~~~~~~~~~---~~-~~~i~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~ 125 (289)
T cd00200 62 DGTYLASGSSD------KTIRLWDLETGECVRTLT---GH-TSYVSSVAFSPDGRILSSSSRD------KTIKVWDVETG 125 (289)
T ss_pred CCCEEEEEcCC------CeEEEEEcCcccceEEEe---cc-CCcEEEEEEcCCCCEEEEecCC------CeEEEEECCCc
Confidence 34466666653 258888888753222211 11 1111222332 24666665533 34888998754
Q ss_pred cEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCe-EEEeecCCCCCCCCcceEEEEE-CCEE
Q 010115 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI-WTRIKIRGFHPSPRAGCCGVLC-GTKW 312 (518)
Q Consensus 235 ~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~~v~~~~~~p~~r~~~~~~~~-~~~i 312 (518)
+-...- . .....-.++....+..+++.|..+ +.+..||+.+.+ ...+... ...-.++... +++.
T Consensus 126 ~~~~~~---~-~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~ 191 (289)
T cd00200 126 KCLTTL---R-GHTDWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTGKCVATLTGH-----TGEVNSVAFSPDGEK 191 (289)
T ss_pred EEEEEe---c-cCCCcEEEEEEcCcCCEEEEEcCC-----CcEEEEEccccccceeEecC-----ccccceEEECCCcCE
Confidence 433221 1 111112233344434245544423 358889986433 2222111 1111222333 4445
Q ss_pred EEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 313 YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 313 yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
+++++.+ ..+.+||+.+......... .. .....+.+. ..+.+++.++.++ .+.+||..+.+
T Consensus 192 l~~~~~~-----~~i~i~d~~~~~~~~~~~~-----~~-~~i~~~~~~--~~~~~~~~~~~~~----~i~i~~~~~~~ 252 (289)
T cd00200 192 LLSSSSD-----GTIKLWDLSTGKCLGTLRG-----HE-NGVNSVAFS--PDGYLLASGSEDG----TIRVWDLRTGE 252 (289)
T ss_pred EEEecCC-----CcEEEEECCCCceecchhh-----cC-CceEEEEEc--CCCcEEEEEcCCC----cEEEEEcCCce
Confidence 5555543 3488999877444332110 01 112223332 2245665555232 67888876543
No 80
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.74 E-value=9.4 Score=39.25 Aligned_cols=221 Identities=18% Similarity=0.223 Sum_probs=109.9
Q ss_pred ECCEEEEEcCcCCCCCCCcEEEEEcCCCc-EEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeE
Q 010115 97 IGNKMIVVGGESGNGLLDDVQVLNFDRFS-WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSV 175 (518)
Q Consensus 97 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v 175 (518)
.+++|+..|+.++ .|.+||..+.. -..+.. ... +...--....++.+++.|+-+. .+
T Consensus 78 ~DG~LlaaGD~sG-----~V~vfD~k~r~iLR~~~a----------h~a-pv~~~~f~~~d~t~l~s~sDd~------v~ 135 (487)
T KOG0310|consen 78 SDGRLLAAGDESG-----HVKVFDMKSRVILRQLYA----------HQA-PVHVTKFSPQDNTMLVSGSDDK------VV 135 (487)
T ss_pred cCCeEEEccCCcC-----cEEEeccccHHHHHHHhh----------ccC-ceeEEEecccCCeEEEecCCCc------eE
Confidence 3689999998764 58899955411 111111 001 1112223456889999988643 23
Q ss_pred EEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCC-cEEEeecCCCCCCCCCCcEE
Q 010115 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL-TWLPLHCTGTGPSPRSNHVA 254 (518)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~g~~p~~r~~~~~ 254 (518)
-.+|..+..- .....+.--.-|.+ ++...++.|++-||+++. +-.||..+. .|..-- .-..|.. .+
T Consensus 136 k~~d~s~a~v-~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg~------vrl~DtR~~~~~v~el-nhg~pVe----~v 202 (487)
T KOG0310|consen 136 KYWDLSTAYV-QAELSGHTDYVRCG-DISPANDHIVVTGSYDGK------VRLWDTRSLTSRVVEL-NHGCPVE----SV 202 (487)
T ss_pred EEEEcCCcEE-EEEecCCcceeEee-ccccCCCeEEEecCCCce------EEEEEeccCCceeEEe-cCCCcee----eE
Confidence 3445555542 32322222222332 333457899999999875 667888776 443221 0112222 24
Q ss_pred EEECC-cEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEEEEEC
Q 010115 255 ALYDD-KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDI 332 (518)
Q Consensus 255 ~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~ 332 (518)
+.+.+ ..|...|| +.+-++|+.++. +.+..+.. ....-.+.... ++.=.+-||.++. +-+||.
T Consensus 203 l~lpsgs~iasAgG-------n~vkVWDl~~G~-qll~~~~~--H~KtVTcL~l~s~~~rLlS~sLD~~-----VKVfd~ 267 (487)
T KOG0310|consen 203 LALPSGSLIASAGG-------NSVKVWDLTTGG-QLLTSMFN--HNKTVTCLRLASDSTRLLSGSLDRH-----VKVFDT 267 (487)
T ss_pred EEcCCCCEEEEcCC-------CeEEEEEecCCc-eehhhhhc--ccceEEEEEeecCCceEeecccccc-----eEEEEc
Confidence 44444 54555565 457777776432 11111110 11111122222 4466677776654 788984
Q ss_pred CCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCC
Q 010115 333 LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE 376 (518)
Q Consensus 333 ~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~ 376 (518)
. .|+.+-.. ..+.+- .++.+.. ++.-+++|..++-
T Consensus 268 t--~~Kvv~s~--~~~~pv--Lsiavs~---dd~t~viGmsnGl 302 (487)
T KOG0310|consen 268 T--NYKVVHSW--KYPGPV--LSIAVSP---DDQTVVIGMSNGL 302 (487)
T ss_pred c--ceEEEEee--ecccce--eeEEecC---CCceEEEecccce
Confidence 4 45554421 112222 2333322 3446677877654
No 81
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=93.68 E-value=6.6 Score=37.33 Aligned_cols=187 Identities=14% Similarity=0.089 Sum_probs=97.0
Q ss_pred eEEEEE--CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCC-CCCccceEEEEECCEEEEEcCcCCC
Q 010115 92 HAAAVI--GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLK-IPACRGHSLISWGKKVLLVGGKTDS 168 (518)
Q Consensus 92 ~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~iyv~GG~~~~ 168 (518)
.+++.. ++.+|+... ....++|+.+.+++.+..... .. ...+..-.++.-++.||+.--....
T Consensus 43 ~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~~~-------~~~~~~~~ND~~vd~~G~ly~t~~~~~~ 108 (246)
T PF08450_consen 43 NGMAFDRPDGRLYVADS-------GGIAVVDPDTGKVTVLADLPD-------GGVPFNRPNDVAVDPDGNLYVTDSGGGG 108 (246)
T ss_dssp EEEEEECTTSEEEEEET-------TCEEEEETTTTEEEEEEEEET-------TCSCTEEEEEEEE-TTS-EEEEEECCBC
T ss_pred ceEEEEccCCEEEEEEc-------CceEEEecCCCcEEEEeeccC-------CCcccCCCceEEEcCCCCEEEEecCCCc
Confidence 344444 577887664 235677999999988876311 01 1122223333336788875332221
Q ss_pred CCCc--eeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCCCc--EEEeecC
Q 010115 169 GSDR--VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCT 242 (518)
Q Consensus 169 ~~~~--~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~ 242 (518)
.... ..+|++++. .+.+.+.. .+. + -..++.. ++.||+. ......+++|++.... +......
T Consensus 109 ~~~~~~g~v~~~~~~-~~~~~~~~--~~~--~-pNGi~~s~dg~~lyv~------ds~~~~i~~~~~~~~~~~~~~~~~~ 176 (246)
T PF08450_consen 109 ASGIDPGSVYRIDPD-GKVTVVAD--GLG--F-PNGIAFSPDGKTLYVA------DSFNGRIWRFDLDADGGELSNRRVF 176 (246)
T ss_dssp TTCGGSEEEEEEETT-SEEEEEEE--EES--S-EEEEEEETTSSEEEEE------ETTTTEEEEEEEETTTCCEEEEEEE
T ss_pred cccccccceEEECCC-CeEEEEec--Ccc--c-ccceEECCcchheeec------ccccceeEEEeccccccceeeeeeE
Confidence 1222 679999999 77666553 121 1 1344443 3467774 1234569999996433 4432211
Q ss_pred CCCCCCC-CCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE----CCEEEEE
Q 010115 243 GTGPSPR-SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC----GTKWYIA 315 (518)
Q Consensus 243 g~~p~~r-~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~----~~~iyv~ 315 (518)
..++... .--.+++-.+..||+..-. .+.|++||++...-..+.. |.++ .+.+.+ .+.|||.
T Consensus 177 ~~~~~~~g~pDG~~vD~~G~l~va~~~-----~~~I~~~~p~G~~~~~i~~----p~~~--~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 177 IDFPGGPGYPDGLAVDSDGNLWVADWG-----GGRIVVFDPDGKLLREIEL----PVPR--PTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EE-SSSSCEEEEEEEBTTS-EEEEEET-----TTEEEEEETTSCEEEEEE-----SSSS--EEEEEEESTTSSEEEEE
T ss_pred EEcCCCCcCCCcceEcCCCCEEEEEcC-----CCEEEEECCCccEEEEEcC----CCCC--EEEEEEECCCCCEEEEE
Confidence 1222221 1224555545558886211 2479999999766666653 3232 233443 3568875
No 82
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.27 E-value=14 Score=39.79 Aligned_cols=217 Identities=15% Similarity=0.130 Sum_probs=109.3
Q ss_pred EEEECCEEEEEcCcCCCCCCceeEEEEECCCCc--EEEeeecC-CC-C---CCCcceEEEEECCEEEEEcccCCCCcccC
Q 010115 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKG-DI-P---VARSGHTVVRASSVLILFGGEDGKRRKLN 224 (518)
Q Consensus 152 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~-~~-p---~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 224 (518)
-++.++.||+.... ..|+.+|..|.+ |+.-.... .. + ........++.+++||+.. . -.
T Consensus 65 Pvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t-~------dg 130 (527)
T TIGR03075 65 PLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT-L------DA 130 (527)
T ss_pred CEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-C------CC
Confidence 34568999986543 248899988865 87643210 00 0 0111233466778888742 1 23
Q ss_pred cEEEEEcCCCc--EEEeecCCCCCCC-CCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCe--EEEeecCCCC---
Q 010115 225 DLHMFDLKSLT--WLPLHCTGTGPSP-RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFH--- 296 (518)
Q Consensus 225 ~~~~yd~~t~~--W~~~~~~g~~p~~-r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~v~~~~~~--- 296 (518)
.++.+|.++.+ |+.-.. ..... ....+-++.++. +|+-...........|+.||.++.+ |+.-...+..
T Consensus 131 ~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~ 207 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYL 207 (527)
T ss_pred EEEEEECCCCCEEeecccc--cccccccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccc
Confidence 58999998764 765421 11111 112233455665 5553221112234579999987754 6643321110
Q ss_pred ----------C---------CCCcc----eEEEEE--CCEEEEEccc----CC------CCCcCeEEEEECCCCc--eEE
Q 010115 297 ----------P---------SPRAG----CCGVLC--GTKWYIAGGG----SR------KKRHAETLIFDILKGE--WSV 339 (518)
Q Consensus 297 ----------p---------~~r~~----~~~~~~--~~~iyv~GG~----~~------~~~~~~v~~yd~~~~~--W~~ 339 (518)
+ ..+.+ ..+++. .+.||+--|. .. +...+.+..+|++|++ |..
T Consensus 208 ~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~ 287 (527)
T TIGR03075 208 DKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHY 287 (527)
T ss_pred cccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEee
Confidence 0 00111 012222 3467765554 11 2346789999999864 765
Q ss_pred eecCCCCCCCCCCCceEEEEee--CCc-cEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 340 AITSPSSSVTSNKGFTLVLVQH--KEK-DFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 340 ~~~~~~~~~~~r~~~s~~~~~~--~~~-~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
-....... ..-.....+++.. +++ ..+++.+..++ .++++|..+.+
T Consensus 288 Q~~~~D~w-D~d~~~~p~l~d~~~~G~~~~~v~~~~K~G----~~~vlDr~tG~ 336 (527)
T TIGR03075 288 QTTPHDEW-DYDGVNEMILFDLKKDGKPRKLLAHADRNG----FFYVLDRTNGK 336 (527)
T ss_pred eCCCCCCc-cccCCCCcEEEEeccCCcEEEEEEEeCCCc----eEEEEECCCCc
Confidence 33211110 1111223344432 222 34676777655 57888887765
No 83
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.18 E-value=3.4 Score=39.68 Aligned_cols=160 Identities=19% Similarity=0.093 Sum_probs=95.4
Q ss_pred eEEEE-ECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEE
Q 010115 150 HSLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHM 228 (518)
Q Consensus 150 ~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 228 (518)
.++.. .++.+|.--|..+ .+.+.++|+.+++-..... +|..-++=+++..+++||..==. ....++
T Consensus 48 QGL~~~~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~~---l~~~~FgEGit~~~d~l~qLTWk------~~~~f~ 114 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYG----QSSLRKVDLETGKVLQSVP---LPPRYFGEGITILGDKLYQLTWK------EGTGFV 114 (264)
T ss_dssp EEEEEEETTEEEEEECSTT----EEEEEEEETTTSSEEEEEE----TTT--EEEEEEETTEEEEEESS------SSEEEE
T ss_pred ccEEecCCCEEEEeCCCCC----cEEEEEEECCCCcEEEEEE---CCccccceeEEEECCEEEEEEec------CCeEEE
Confidence 34555 5789999888754 3579999999998766655 88888899999999999998322 356899
Q ss_pred EEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEE-eecC-CCCCCCCcceEEE
Q 010115 229 FDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-IKIR-GFHPSPRAGCCGV 306 (518)
Q Consensus 229 yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-v~~~-~~~p~~r~~~~~~ 306 (518)
||.++- +.+. ..+.+..+-..+..+.. |++--|. +.++.+||++.+=.. +... ...|..+ ---.-
T Consensus 115 yd~~tl--~~~~---~~~y~~EGWGLt~dg~~-Li~SDGS------~~L~~~dP~~f~~~~~i~V~~~g~pv~~-LNELE 181 (264)
T PF05096_consen 115 YDPNTL--KKIG---TFPYPGEGWGLTSDGKR-LIMSDGS------SRLYFLDPETFKEVRTIQVTDNGRPVSN-LNELE 181 (264)
T ss_dssp EETTTT--EEEE---EEE-SSS--EEEECSSC-EEEE-SS------SEEEEE-TTT-SEEEEEE-EETTEE----EEEEE
T ss_pred Eccccc--eEEE---EEecCCcceEEEcCCCE-EEEECCc------cceEEECCcccceEEEEEEEECCEECCC-cEeEE
Confidence 998754 4443 44445567777755555 8888774 579999998754222 2111 0011111 11122
Q ss_pred EECCEEEEEcccCCCCCcCeEEEEECCCCceEEe
Q 010115 307 LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (518)
Q Consensus 307 ~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 340 (518)
.+++.||.= -=..+.|.+.||+++.-...
T Consensus 182 ~i~G~IyAN-----VW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 182 YINGKIYAN-----VWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp EETTEEEEE-----ETTSSEEEEEETTT-BEEEE
T ss_pred EEcCEEEEE-----eCCCCeEEEEeCCCCeEEEE
Confidence 345665531 11246789999999876553
No 84
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.07 E-value=14 Score=39.31 Aligned_cols=124 Identities=15% Similarity=0.138 Sum_probs=63.8
Q ss_pred EEEECCEEEEEcCcCCCCCCceeEEEEECCCCc--EEEeeecCCCC-C-CCcceEEEEEC-CEEEEEcccCCCCcccCcE
Q 010115 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIP-V-ARSGHTVVRAS-SVLILFGGEDGKRRKLNDL 226 (518)
Q Consensus 152 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p-~-~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~ 226 (518)
-++.++++|+.... ..++.+|..+.+ |+.-......+ . +-.....++.+ +++|+... -..+
T Consensus 57 Pvv~~g~vy~~~~~-------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-------~g~v 122 (488)
T cd00216 57 PLVVDGDMYFTTSH-------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-------DGRL 122 (488)
T ss_pred CEEECCEEEEeCCC-------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-------CCeE
Confidence 35668999986543 258899998765 88643211000 0 00111234455 78886421 2458
Q ss_pred EEEEcCCC--cEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCC----CCCCcEEEEEcCCC--eEEEee
Q 010115 227 HMFDLKSL--TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS----KTLNDLYSLDFETM--IWTRIK 291 (518)
Q Consensus 227 ~~yd~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~----~~~~~v~~yd~~~~--~W~~v~ 291 (518)
+.+|.++. .|+.-......+......+.++.+ . ++++|..+.. .....++.||.++. .|+.-.
T Consensus 123 ~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~-~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 123 VALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVK-K-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred EEEECCCCCEeeeecCCCCcCcceEecCCCEEEC-C-EEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 88998765 487643110000000122334444 4 3444533211 23457999999764 587543
No 85
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=92.88 E-value=3.9 Score=34.69 Aligned_cols=85 Identities=15% Similarity=0.109 Sum_probs=55.2
Q ss_pred EECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCC-CCcCeEEEEE-CC
Q 010115 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK-KRHAETLIFD-IL 333 (518)
Q Consensus 256 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd-~~ 333 (518)
.++|- +|-..-. .....+.|.+||.++.+|+.+..+............+.++|+|-++.-.... ...-++|+++ ..
T Consensus 3 cinGv-ly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 3 CINGV-LYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EECcE-EEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 34555 4444332 2334567999999999999887631223445566677789999887654433 2346789885 66
Q ss_pred CCceEEeec
Q 010115 334 KGEWSVAIT 342 (518)
Q Consensus 334 ~~~W~~~~~ 342 (518)
+.+|++...
T Consensus 81 k~~Wsk~~~ 89 (129)
T PF08268_consen 81 KQEWSKKHI 89 (129)
T ss_pred cceEEEEEE
Confidence 789998643
No 86
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=92.87 E-value=7.6 Score=35.65 Aligned_cols=151 Identities=14% Similarity=0.172 Sum_probs=77.8
Q ss_pred EEEEECCEEEEEcCcCCCCCCCcEEEEEcCCCc--EEEcccccccCCCCCCCCCCCccceEEEEE-C-CEEEEEcCcCCC
Q 010115 93 AAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISW-G-KKVLLVGGKTDS 168 (518)
Q Consensus 93 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~ 168 (518)
+++..++++|+|-| +.+|+++..... -..+... .|. .|... -++... . +++|+|-|.
T Consensus 11 A~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~-------w~~-~p~~I-DAa~~~~~~~~~yfFkg~--- 71 (194)
T cd00094 11 AVTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSF-------WPS-LPSPV-DAAFERPDTGKIYFFKGD--- 71 (194)
T ss_pred eEEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhh-------CCC-CCCCc-cEEEEECCCCEEEEECCC---
Confidence 34445688999987 346777765211 1111110 000 12222 233333 3 899999664
Q ss_pred CCCceeEEEEECCCCcEE---EeeecCCCCC--CCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEcCCCcEEE----
Q 010115 169 GSDRVSVWTFDTETECWS---VVEAKGDIPV--ARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP---- 238 (518)
Q Consensus 169 ~~~~~~v~~yd~~t~~W~---~~~~~~~~p~--~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~---- 238 (518)
.+|+|+..+..+. .+.. -..|. .....+...- ++++|+|-| +..|+||..+++...
T Consensus 72 -----~yw~~~~~~~~~~~Pk~i~~-~~~~~~~~~iDAA~~~~~~~~~yfFkg--------~~y~ry~~~~~~v~~~yP~ 137 (194)
T cd00094 72 -----KYWVYTGKNLEPGYPKPISD-LGFPPTVKQIDAALRWPDNGKTYFFKG--------DKYWRYDEKTQKMDPGYPK 137 (194)
T ss_pred -----EEEEEcCcccccCCCcchhh-cCCCCCCCCccEEEEEcCCCEEEEEeC--------CEEEEEeCCCccccCCCCc
Confidence 5899987652221 1111 01222 2233333222 589999966 457888876554321
Q ss_pred -eec-CCCCCCCCCCcEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCe
Q 010115 239 -LHC-TGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (518)
Q Consensus 239 -~~~-~g~~p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (518)
+.. -..+|.. . .++.... ++ +|+|-| +..|+||..+++
T Consensus 138 ~i~~~w~g~p~~-i-daa~~~~~~~-~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 138 LIETDFPGVPDK-V-DAAFRWLDGY-YYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred chhhcCCCcCCC-c-ceeEEeCCCc-EEEEEC-------CEEEEEeCccce
Confidence 110 0123322 2 2333444 55 888877 379999988765
No 87
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.67 E-value=14 Score=38.17 Aligned_cols=220 Identities=14% Similarity=0.140 Sum_probs=105.7
Q ss_pred CCCCeEEeccCCCCCCCc--cceEEEEECCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccc
Q 010115 72 NSENWMVLSIAGDKPIPR--FNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRG 149 (518)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R--~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~ 149 (518)
--.+|+...........+ ...++...++..|++|-.. -++.=.=...+|+.++... ..+. ..
T Consensus 118 GG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~G------~il~T~DgG~tW~~~~~~~---------~~p~-~~ 181 (398)
T PLN00033 118 GGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKPA------ILLHTSDGGETWERIPLSP---------KLPG-EP 181 (398)
T ss_pred CCCCceECccCcccccccccceeeeEEECCEEEEEcCce------EEEEEcCCCCCceECcccc---------CCCC-Cc
Confidence 456898864211111111 2244455677788886321 1222222347999886521 1111 12
Q ss_pred eEEEEE-CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecC-CCCCC--------------CcceEEEE-ECCEEEE
Q 010115 150 HSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG-DIPVA--------------RSGHTVVR-ASSVLIL 212 (518)
Q Consensus 150 ~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~-~~p~~--------------r~~~~~~~-~~~~iyv 212 (518)
+.+... ++.++++|... .+++-+-.-.+|+.+.... ..+.. -....+.. -++.+++
T Consensus 182 ~~i~~~~~~~~~ivg~~G-------~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~ 254 (398)
T PLN00033 182 VLIKATGPKSAEMVTDEG-------AIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVA 254 (398)
T ss_pred eEEEEECCCceEEEeccc-------eEEEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEE
Confidence 333344 45677777432 3666666667899762110 00111 11111121 2334555
Q ss_pred EcccCCCCcccCcEEEE-EcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeE----
Q 010115 213 FGGEDGKRRKLNDLHMF-DLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW---- 287 (518)
Q Consensus 213 ~GG~~~~~~~~~~~~~y-d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W---- 287 (518)
+|-.. .+++- |.....|+.+. .+.++...++....+..+++.|... .++.-+.....|
T Consensus 255 vg~~G-------~~~~s~d~G~~~W~~~~----~~~~~~l~~v~~~~dg~l~l~g~~G------~l~~S~d~G~~~~~~~ 317 (398)
T PLN00033 255 VSSRG-------NFYLTWEPGQPYWQPHN----RASARRIQNMGWRADGGLWLLTRGG------GLYVSKGTGLTEEDFD 317 (398)
T ss_pred EECCc-------cEEEecCCCCcceEEec----CCCccceeeeeEcCCCCEEEEeCCc------eEEEecCCCCcccccc
Confidence 54221 23332 32233489884 4445555555554444477776432 344444444444
Q ss_pred -EEeecCCCCCCCCcceE-EEEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEee
Q 010115 288 -TRIKIRGFHPSPRAGCC-GVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (518)
Q Consensus 288 -~~v~~~~~~p~~r~~~~-~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 341 (518)
+.+.. +..+.... +... ++.++++|... -++.-.....+|++..
T Consensus 318 f~~~~~----~~~~~~l~~v~~~~d~~~~a~G~~G------~v~~s~D~G~tW~~~~ 364 (398)
T PLN00033 318 FEEADI----KSRGFGILDVGYRSKKEAWAAGGSG------ILLRSTDGGKSWKRDK 364 (398)
T ss_pred eeeccc----CCCCcceEEEEEcCCCcEEEEECCC------cEEEeCCCCcceeEcc
Confidence 44322 22222233 3333 66888888643 2556666778999965
No 88
>PRK00178 tolB translocation protein TolB; Provisional
Probab=92.43 E-value=15 Score=38.15 Aligned_cols=146 Identities=12% Similarity=0.110 Sum_probs=79.7
Q ss_pred eeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-EC-CEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCC
Q 010115 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-AS-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (518)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~ 250 (518)
..+|++|+.+++-+.+.. .+. ....... -+ ++|++..-.++ ..++|++|+.+...+.+.. .+. ..
T Consensus 223 ~~l~~~~l~~g~~~~l~~---~~g--~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~---~~~-~~ 289 (430)
T PRK00178 223 PRIFVQNLDTGRREQITN---FEG--LNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTN---HPA-ID 289 (430)
T ss_pred CEEEEEECCCCCEEEccC---CCC--CcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEccc---CCC-Cc
Confidence 379999999988776653 221 1111222 23 45554322222 2579999999998887752 111 11
Q ss_pred CcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEE-E-CCEEEEEcccCCCCCcCeEE
Q 010115 251 NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-C-GTKWYIAGGGSRKKRHAETL 328 (518)
Q Consensus 251 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~v~ 328 (518)
......-+++.|++.....+ ..++|.+|+.+++++++...+ ........ - ++.|++.....+ ..+++
T Consensus 290 ~~~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~~~~~~~~---~~~l~ 358 (430)
T PRK00178 290 TEPFWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLVMVHRQDG---NFHVA 358 (430)
T ss_pred CCeEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEEEEEccCC---ceEEE
Confidence 11122234554554432221 247999999998888876431 11111122 2 345555443221 24689
Q ss_pred EEECCCCceEEeec
Q 010115 329 IFDILKGEWSVAIT 342 (518)
Q Consensus 329 ~yd~~~~~W~~~~~ 342 (518)
.+|+.+...+.+..
T Consensus 359 ~~dl~tg~~~~lt~ 372 (430)
T PRK00178 359 AQDLQRGSVRILTD 372 (430)
T ss_pred EEECCCCCEEEccC
Confidence 99999998887753
No 89
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=92.38 E-value=13 Score=37.10 Aligned_cols=240 Identities=11% Similarity=0.092 Sum_probs=107.2
Q ss_pred EEEEEcCcCCCCCCCcEEEEEcCC-CcEEEcccccccCCCCCCCCCCCccceEEEE--ECCEEEEEcCcCCCCCCceeEE
Q 010115 100 KMIVVGGESGNGLLDDVQVLNFDR-FSWTAASSKLYLSPSSLPLKIPACRGHSLIS--WGKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 100 ~lyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~ 176 (518)
.+|+..+.+ +.+.+|+..+ .+++.+... +... ..+.++. .++.||+.+.. . ..+.
T Consensus 3 ~~y~~~~~~-----~~I~~~~~~~~g~l~~~~~~----------~~~~-~~~~l~~spd~~~lyv~~~~-~-----~~i~ 60 (330)
T PRK11028 3 IVYIASPES-----QQIHVWNLNHEGALTLLQVV----------DVPG-QVQPMVISPDKRHLYVGVRP-E-----FRVL 60 (330)
T ss_pred EEEEEcCCC-----CCEEEEEECCCCceeeeeEE----------ecCC-CCccEEECCCCCEEEEEECC-C-----CcEE
Confidence 467765433 5678888864 466655441 1111 1122222 24567775432 1 2455
Q ss_pred EEECC-CCcEEEeeecCCCCCCCcceEEEEE-C-CEEEEEcccCCCCcccCcEEEEEcCCCc--EEEeecCCCCCCCCCC
Q 010115 177 TFDTE-TECWSVVEAKGDIPVARSGHTVVRA-S-SVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSN 251 (518)
Q Consensus 177 ~yd~~-t~~W~~~~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~ 251 (518)
.|+.. +++++.+.. .+.+..-+.++.. + ..+|+.. +. .+.+..||+.++. .+.+. ..+....-
T Consensus 61 ~~~~~~~g~l~~~~~---~~~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~---~~~~~~~~ 128 (330)
T PRK11028 61 SYRIADDGALTFAAE---SPLPGSPTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQ---IIEGLEGC 128 (330)
T ss_pred EEEECCCCceEEeee---ecCCCCceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCcee---eccCCCcc
Confidence 56554 556765543 2222111223332 3 4566653 21 2457778875431 12222 12222233
Q ss_pred cEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCC-eEEEeecC-CCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCe
Q 010115 252 HVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETM-IWTRIKIR-GFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAE 326 (518)
Q Consensus 252 ~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~-~W~~v~~~-~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 326 (518)
|.+++.. ++.+|+..-. .+.|..||+++. ........ -..+....-+.++.. +..+|+.-.. .+.
T Consensus 129 ~~~~~~p~g~~l~v~~~~-----~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----~~~ 198 (330)
T PRK11028 129 HSANIDPDNRTLWVPCLK-----EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----NSS 198 (330)
T ss_pred cEeEeCCCCCEEEEeeCC-----CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----CCE
Confidence 5554543 4556664321 246999998763 22110000 000111111123333 3467776432 245
Q ss_pred EEEEECC--CCceEEeec---CCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 010115 327 TLIFDIL--KGEWSVAIT---SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (518)
Q Consensus 327 v~~yd~~--~~~W~~~~~---~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~ 389 (518)
+.+||++ +++.+.+.. .|.....++... .+.+ +++..+||+... ..+.+-+|+++.+
T Consensus 199 v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~i~~-~pdg~~lyv~~~----~~~~I~v~~i~~~ 260 (330)
T PRK11028 199 VDVWQLKDPHGEIECVQTLDMMPADFSDTRWAA-DIHI-TPDGRHLYACDR----TASLISVFSVSED 260 (330)
T ss_pred EEEEEEeCCCCCEEEEEEEecCCCcCCCCccce-eEEE-CCCCCEEEEecC----CCCeEEEEEEeCC
Confidence 7777765 445544322 222212222221 2223 345567887522 2347788887554
No 90
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=91.84 E-value=16 Score=36.93 Aligned_cols=270 Identities=18% Similarity=0.216 Sum_probs=127.3
Q ss_pred CCCCeEEeccCCCCCCCccceEEEE--ECCEEEEEcCcCCCCCCCcEEEEEcCC--CcEEEcccccccCCCCCCCCCCCc
Q 010115 72 NSENWMVLSIAGDKPIPRFNHAAAV--IGNKMIVVGGESGNGLLDDVQVLNFDR--FSWTAASSKLYLSPSSLPLKIPAC 147 (518)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~~~~~~~~~~~~~~~r 147 (518)
.+.++..+........|-+ ++. -++.||+..... .....+..|.... .+.+.+... +...
T Consensus 23 ~~g~l~~~~~~~~~~~Ps~---l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~~~~----------~~~g- 86 (345)
T PF10282_consen 23 ETGTLTLVQTVAEGENPSW---LAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLLNSV----------PSGG- 86 (345)
T ss_dssp TTTEEEEEEEEEESSSECC---EEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTEEEEEEEE----------EESS-
T ss_pred CCCCceEeeeecCCCCCce---EEEEeCCCEEEEEEccc--cCCCCEEEEEECCCcceeEEeeee----------ccCC-
Confidence 7777877753111111111 222 246788886543 1234555555544 577776652 1111
Q ss_pred cceEEEEE---CCEEEEEcCcCCCCCCceeEEEEECCCC-cEEEee------ecCC---CCCCCcceEEEEE--CCEEEE
Q 010115 148 RGHSLISW---GKKVLLVGGKTDSGSDRVSVWTFDTETE-CWSVVE------AKGD---IPVARSGHTVVRA--SSVLIL 212 (518)
Q Consensus 148 ~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~------~~~~---~p~~r~~~~~~~~--~~~iyv 212 (518)
...+.+.+ +..||+.--. ...+..|++..+ +-.... ..+. ....-.-|.+... ++.+|+
T Consensus 87 ~~p~~i~~~~~g~~l~vany~------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYG------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETT------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred CCcEEEEEecCCCEEEEEEcc------CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 12222333 4566665211 124667776653 222211 0011 1223344555554 357777
Q ss_pred EcccCCCCcccCcEEEEEcCCCc--EEEeecCCCCCCC-CCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcC--CCeE
Q 010115 213 FGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSP-RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFE--TMIW 287 (518)
Q Consensus 213 ~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~-r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~--~~~W 287 (518)
.. .-.+.+++|+..... .+..... ..|.. --.|.+..-+++.+||.... .+.|..|+.. +..+
T Consensus 161 ~d------lG~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~-----s~~v~v~~~~~~~g~~ 228 (345)
T PF10282_consen 161 PD------LGADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNEL-----SNTVSVFDYDPSDGSL 228 (345)
T ss_dssp EE------TTTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETT-----TTEEEEEEEETTTTEE
T ss_pred Ee------cCCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCC-----CCcEEEEeecccCCce
Confidence 62 124678898887765 6553211 11211 11233323355679998754 3456666655 6677
Q ss_pred EEeecCCCCCC---CCcceEEEEE---CCEEEEEcccCCCCCcCeEEEEEC--CCCceEEeecCCCCCCCCCCCceEEEE
Q 010115 288 TRIKIRGFHPS---PRAGCCGVLC---GTKWYIAGGGSRKKRHAETLIFDI--LKGEWSVAITSPSSSVTSNKGFTLVLV 359 (518)
Q Consensus 288 ~~v~~~~~~p~---~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~--~~~~W~~~~~~~~~~~~~r~~~s~~~~ 359 (518)
+.+......|. .....+.+.+ +..||+.-.. .+.|.+|++ .+++.+.+...+.....+ ....+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~~~~~~~~G~~P----r~~~~ 299 (345)
T PF10282_consen 229 TEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----SNSISVFDLDPATGTLTLVQTVPTGGKFP----RHFAF 299 (345)
T ss_dssp EEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----TTEEEEEEECTTTTTEEEEEEEEESSSSE----EEEEE
T ss_pred eEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----CCEEEEEEEecCCCceEEEEEEeCCCCCc----cEEEE
Confidence 66554322222 2212333333 4467776432 355777776 556676665433211112 22233
Q ss_pred eeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 010115 360 QHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (518)
Q Consensus 360 ~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~ 389 (518)
. ++..+||+..... +.|.+|+++..
T Consensus 300 s-~~g~~l~Va~~~s----~~v~vf~~d~~ 324 (345)
T PF10282_consen 300 S-PDGRYLYVANQDS----NTVSVFDIDPD 324 (345)
T ss_dssp --TTSSEEEEEETTT----TEEEEEEEETT
T ss_pred e-CCCCEEEEEecCC----CeEEEEEEeCC
Confidence 2 3446666654332 36888876543
No 91
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.82 E-value=21 Score=38.40 Aligned_cols=129 Identities=14% Similarity=0.084 Sum_probs=69.6
Q ss_pred eEEEEECCEEEEEcCcCCCCCCCcEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCC
Q 010115 92 HAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (518)
Q Consensus 92 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 169 (518)
.+-++.++.||+.... ..++.+|..+. .|+.-........ +.........+.++.+++||+....
T Consensus 63 stPvv~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~~~---~~~~~~~~~rg~av~~~~v~v~t~d---- 129 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDDVI---PVMCCDVVNRGVALYDGKVFFGTLD---- 129 (527)
T ss_pred cCCEEECCEEEEECCC------CcEEEEECCCCceeeEecCCCCcccc---cccccccccccceEECCEEEEEcCC----
Confidence 3456678999986542 36899998874 6876543100000 0000001122345667888874321
Q ss_pred CCceeEEEEECCCCc--EEEeeecCCCCC-CCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCc--EEEe
Q 010115 170 SDRVSVWTFDTETEC--WSVVEAKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPL 239 (518)
Q Consensus 170 ~~~~~v~~yd~~t~~--W~~~~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~ 239 (518)
..++.+|.+|.+ |+.-.. +... .....+-++.++.||+-...... .....+..||.++.+ |+.-
T Consensus 130 ---g~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~~g~Vivg~~~~~~-~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 130 ---ARLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVVKGKVITGISGGEF-GVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ---CEEEEEECCCCCEEeecccc--cccccccccCCcEEECCEEEEeeccccc-CCCcEEEEEECCCCceeEecc
Confidence 258999999876 875432 1111 11222345568887774322111 123568889998764 7644
No 92
>PRK04922 tolB translocation protein TolB; Provisional
Probab=91.27 E-value=21 Score=37.29 Aligned_cols=146 Identities=14% Similarity=0.142 Sum_probs=79.0
Q ss_pred eeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCc
Q 010115 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (518)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~ 252 (518)
..++++|+.+++-+.+.. .+..-......-.+.+|++....++ ..+++++|+.+.+.+.+.. ... . ..
T Consensus 228 ~~l~~~dl~~g~~~~l~~---~~g~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~---~~~-~-~~ 295 (433)
T PRK04922 228 SAIYVQDLATGQRELVAS---FRGINGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTN---HFG-I-DT 295 (433)
T ss_pred cEEEEEECCCCCEEEecc---CCCCccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECcc---CCC-C-cc
Confidence 469999999888776653 2221111111112345555433222 2579999999888776642 111 1 11
Q ss_pred EEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEE--ECCEEEEEcccCCCCCcCeEEE
Q 010115 253 VAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL--CGTKWYIAGGGSRKKRHAETLI 329 (518)
Q Consensus 253 ~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~ 329 (518)
..... +++.|++.....+ ..++|.+|..+.+++.+...+ ........ .+..|++..+..+ ...+++
T Consensus 296 ~~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~~~---~~~I~v 364 (433)
T PRK04922 296 EPTWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHGSGG---QYRIAV 364 (433)
T ss_pred ceEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEECCCC---ceeEEE
Confidence 22233 4453443332222 247999999888888876432 11112222 2445655543221 236899
Q ss_pred EECCCCceEEee
Q 010115 330 FDILKGEWSVAI 341 (518)
Q Consensus 330 yd~~~~~W~~~~ 341 (518)
+|+.++..+.+.
T Consensus 365 ~d~~~g~~~~Lt 376 (433)
T PRK04922 365 MDLSTGSVRTLT 376 (433)
T ss_pred EECCCCCeEECC
Confidence 999998888765
No 93
>PRK00178 tolB translocation protein TolB; Provisional
Probab=91.22 E-value=21 Score=37.16 Aligned_cols=144 Identities=10% Similarity=0.033 Sum_probs=76.0
Q ss_pred CcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcc
Q 010115 224 NDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG 302 (518)
Q Consensus 224 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~ 302 (518)
..++++|+.+.+-+.+. ..+. ........ +++.|++....++ ..++|.+|+++...+++... +. ...
T Consensus 223 ~~l~~~~l~~g~~~~l~---~~~g--~~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~---~~-~~~ 290 (430)
T PRK00178 223 PRIFVQNLDTGRREQIT---NFEG--LNGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTNH---PA-IDT 290 (430)
T ss_pred CEEEEEECCCCCEEEcc---CCCC--CcCCeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcccC---CC-CcC
Confidence 57999999988877765 2221 11122232 4453443322221 25799999999988877542 11 111
Q ss_pred eEEEEEC-CEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcE
Q 010115 303 CCGVLCG-TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQV 381 (518)
Q Consensus 303 ~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v 381 (518)
.....-+ .+|++..... ....+|.+|+.++.++.+.... .......+.. +...|+.....++ ...+
T Consensus 291 ~~~~spDg~~i~f~s~~~---g~~~iy~~d~~~g~~~~lt~~~-------~~~~~~~~Sp-dg~~i~~~~~~~~--~~~l 357 (430)
T PRK00178 291 EPFWGKDGRTLYFTSDRG---GKPQIYKVNVNGGRAERVTFVG-------NYNARPRLSA-DGKTLVMVHRQDG--NFHV 357 (430)
T ss_pred CeEECCCCCEEEEEECCC---CCceEEEEECCCCCEEEeecCC-------CCccceEECC-CCCEEEEEEccCC--ceEE
Confidence 1111123 4565543222 2257999999999888765211 1112222332 3345554443222 3368
Q ss_pred EEEEcccCCcc
Q 010115 382 EVLSIEKNESS 392 (518)
Q Consensus 382 ~~yd~~~~~w~ 392 (518)
+++|+.+.+..
T Consensus 358 ~~~dl~tg~~~ 368 (430)
T PRK00178 358 AAQDLQRGSVR 368 (430)
T ss_pred EEEECCCCCEE
Confidence 89998876543
No 94
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=90.98 E-value=18 Score=36.02 Aligned_cols=194 Identities=8% Similarity=0.076 Sum_probs=89.0
Q ss_pred EEEEEcCcCCCCCCceeEEEEECCC-CcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcC-C
Q 010115 158 KVLLVGGKTDSGSDRVSVWTFDTET-ECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLK-S 233 (518)
Q Consensus 158 ~iyv~GG~~~~~~~~~~v~~yd~~t-~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~-t 233 (518)
.+|+..+.. ..+..||..+ .+++.+.. .+.....+.++.. +..||+.+. . ...+..|++. +
T Consensus 3 ~~y~~~~~~------~~I~~~~~~~~g~l~~~~~---~~~~~~~~~l~~spd~~~lyv~~~-~-----~~~i~~~~~~~~ 67 (330)
T PRK11028 3 IVYIASPES------QQIHVWNLNHEGALTLLQV---VDVPGQVQPMVISPDKRHLYVGVR-P-----EFRVLSYRIADD 67 (330)
T ss_pred EEEEEcCCC------CCEEEEEECCCCceeeeeE---EecCCCCccEEECCCCCEEEEEEC-C-----CCcEEEEEECCC
Confidence 567775442 2467777753 57776654 3322222333332 346777443 2 2456677775 4
Q ss_pred CcEEEeecCCCCCCCCCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCe--EEEeecCCCCCCCCcceEEEEE-C
Q 010115 234 LTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLC-G 309 (518)
Q Consensus 234 ~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~v~~~~~~p~~r~~~~~~~~-~ 309 (518)
.+++.+. ..+.+..-+.++.. +++.+|+..-. .+.+..|+++++. .+.+... +....-|+++.. +
T Consensus 68 g~l~~~~---~~~~~~~p~~i~~~~~g~~l~v~~~~-----~~~v~v~~~~~~g~~~~~~~~~---~~~~~~~~~~~~p~ 136 (330)
T PRK11028 68 GALTFAA---ESPLPGSPTHISTDHQGRFLFSASYN-----ANCVSVSPLDKDGIPVAPIQII---EGLEGCHSANIDPD 136 (330)
T ss_pred CceEEee---eecCCCCceEEEECCCCCEEEEEEcC-----CCeEEEEEECCCCCCCCceeec---cCCCcccEeEeCCC
Confidence 5676554 22222111223333 45656665321 2467888875321 1222211 111222444343 3
Q ss_pred -CEEEEEcccCCCCCcCeEEEEECCCC-ceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcc
Q 010115 310 -TKWYIAGGGSRKKRHAETLIFDILKG-EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 387 (518)
Q Consensus 310 -~~iyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~ 387 (518)
..+|+..-. .+.+.+||+.+. ............+. ..+...+.+. ++..++|+.-.. .+.+.+|++.
T Consensus 137 g~~l~v~~~~-----~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~-pdg~~lyv~~~~----~~~v~v~~~~ 205 (330)
T PRK11028 137 NRTLWVPCLK-----EDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFH-PNQQYAYCVNEL----NSSVDVWQLK 205 (330)
T ss_pred CCEEEEeeCC-----CCEEEEEEECCCCcccccCCCceecCC-CCCCceEEEC-CCCCEEEEEecC----CCEEEEEEEe
Confidence 356665422 245899998763 22211000000001 1111223333 344577776332 3478888876
Q ss_pred c
Q 010115 388 K 388 (518)
Q Consensus 388 ~ 388 (518)
.
T Consensus 206 ~ 206 (330)
T PRK11028 206 D 206 (330)
T ss_pred C
Confidence 3
No 95
>PRK05137 tolB translocation protein TolB; Provisional
Probab=90.88 E-value=23 Score=37.03 Aligned_cols=188 Identities=12% Similarity=0.025 Sum_probs=93.2
Q ss_pred eeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCc
Q 010115 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (518)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~ 252 (518)
..+|.+|+.+++.+.+.. .+..-......-.+.+|++....++ ..++|.+|+.+...+.+. ..+. ....
T Consensus 226 ~~i~~~dl~~g~~~~l~~---~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt---~~~~-~~~~ 294 (435)
T PRK05137 226 PRVYLLDLETGQRELVGN---FPGMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLT---DSPA-IDTS 294 (435)
T ss_pred CEEEEEECCCCcEEEeec---CCCcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEcc---CCCC-ccCc
Confidence 479999999998877753 2222122222222345554433322 257999999988877775 2221 1111
Q ss_pred EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECC-EEEEEcccCCCCCcCeEEEEE
Q 010115 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGT-KWYIAGGGSRKKRHAETLIFD 331 (518)
Q Consensus 253 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd 331 (518)
....-+++.|++.....+ ..++|.+|..+...+++... ..........-++ .|++... ... ...++.+|
T Consensus 295 ~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~-~~~--~~~i~~~d 364 (435)
T PRK05137 295 PSYSPDGSQIVFESDRSG---SPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTKQ-GGG--QFSIGVMK 364 (435)
T ss_pred eeEcCCCCEEEEEECCCC---CCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEEc-CCC--ceEEEEEE
Confidence 222234553443322211 24799999988877777542 1111111111244 4544432 111 24688999
Q ss_pred CCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCC-CCcEEEEEcccCC
Q 010115 332 ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNE 390 (518)
Q Consensus 332 ~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~-~~~v~~yd~~~~~ 390 (518)
+++...+.+... . ......+..++ ..|+......+.. ...++++|+....
T Consensus 365 ~~~~~~~~lt~~--~------~~~~p~~spDG-~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 365 PDGSGERILTSG--F------LVEGPTWAPNG-RVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred CCCCceEeccCC--C------CCCCCeECCCC-CEEEEEEccCCCCCcceEEEEECCCCc
Confidence 877766554321 1 01112222222 3444333222221 2478888876654
No 96
>PRK04792 tolB translocation protein TolB; Provisional
Probab=90.78 E-value=24 Score=37.10 Aligned_cols=148 Identities=16% Similarity=0.146 Sum_probs=79.0
Q ss_pred CcEEEEEcCCCcEEEcccccccCCCCCCCCCCCcc-ceEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecC
Q 010115 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACR-GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (518)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~ 192 (518)
..+|++|+.+.+-+.+... +... ..+....+++|++.....+ ..++|.+|+.+++.+.+...
T Consensus 242 ~~L~~~dl~tg~~~~lt~~------------~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~- 304 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSF------------PGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRH- 304 (448)
T ss_pred cEEEEEECCCCCeEEecCC------------CCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccC-
Confidence 4688888877765555431 1111 1122223455665533221 24799999999988876541
Q ss_pred CCCCCCcceEEEEEC-CEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCC
Q 010115 193 DIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS 271 (518)
Q Consensus 193 ~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~ 271 (518)
. .........-+ ..|++.....+ ..++|.+|+.+.+++.+...+.. .......-+++.|++.+ ....
T Consensus 305 --~-~~~~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~-~~~g 372 (448)
T PRK04792 305 --R-AIDTEPSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEGEQ----NLGGSITPDGRSMIMVN-RTNG 372 (448)
T ss_pred --C-CCccceEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCCCC----CcCeeECCCCCEEEEEE-ecCC
Confidence 1 11111111223 45554432222 25799999999999887522211 11122233555454443 2221
Q ss_pred CCCCcEEEEEcCCCeEEEeec
Q 010115 272 KTLNDLYSLDFETMIWTRIKI 292 (518)
Q Consensus 272 ~~~~~v~~yd~~~~~W~~v~~ 292 (518)
..+++.+|+.+...+.+..
T Consensus 373 --~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 373 --KFNIARQDLETGAMQVLTS 391 (448)
T ss_pred --ceEEEEEECCCCCeEEccC
Confidence 2479999999988877654
No 97
>PRK04922 tolB translocation protein TolB; Provisional
Probab=90.75 E-value=23 Score=36.93 Aligned_cols=145 Identities=10% Similarity=0.023 Sum_probs=75.1
Q ss_pred CcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcce
Q 010115 224 NDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC 303 (518)
Q Consensus 224 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~ 303 (518)
..++++|+.+.+-+.+. ..+.. .......-+++.|++....++ ..+++.+|+.++.-+++... .. ....
T Consensus 228 ~~l~~~dl~~g~~~~l~---~~~g~-~~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~---~~-~~~~ 296 (433)
T PRK04922 228 SAIYVQDLATGQRELVA---SFRGI-NGAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNH---FG-IDTE 296 (433)
T ss_pred cEEEEEECCCCCEEEec---cCCCC-ccCceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccC---CC-Cccc
Confidence 56999999988877765 22221 111122234554544322222 24799999998887666432 11 1111
Q ss_pred EEEEECCE-EEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEE
Q 010115 304 CGVLCGTK-WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVE 382 (518)
Q Consensus 304 ~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~ 382 (518)
....-+++ |++.....+ ..++|.+|..+.+++.+.... ... ....+.. +...|+...+.++ ...++
T Consensus 297 ~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g------~~~-~~~~~Sp-DG~~Ia~~~~~~~--~~~I~ 363 (433)
T PRK04922 297 PTWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQG------NYN-ARASVSP-DGKKIAMVHGSGG--QYRIA 363 (433)
T ss_pred eEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecCC------CCc-cCEEECC-CCCEEEEEECCCC--ceeEE
Confidence 11112444 444432221 247999999988887765211 111 1223332 3345555444222 23788
Q ss_pred EEEcccCCcc
Q 010115 383 VLSIEKNESS 392 (518)
Q Consensus 383 ~yd~~~~~w~ 392 (518)
++|+.+.+..
T Consensus 364 v~d~~~g~~~ 373 (433)
T PRK04922 364 VMDLSTGSVR 373 (433)
T ss_pred EEECCCCCeE
Confidence 9998776543
No 98
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=90.70 E-value=22 Score=36.60 Aligned_cols=149 Identities=11% Similarity=0.061 Sum_probs=76.5
Q ss_pred CcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCC
Q 010115 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 193 (518)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~ 193 (518)
..++++|+.+..-..+... .. .....+....++.|++...... ..++|.+|+.+...+.+...
T Consensus 214 ~~i~v~d~~~g~~~~~~~~----------~~-~~~~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~-- 276 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASF----------PG-MNGAPAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNG-- 276 (417)
T ss_pred cEEEEEECCCCCEEEeecC----------CC-CccceEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCC--
Confidence 4577888877655544331 00 1111111112345665533221 24699999999887766531
Q ss_pred CCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEE-CCcEEEEEcCCCCCC
Q 010115 194 IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSK 272 (518)
Q Consensus 194 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~ 272 (518)
+...........+.+|++...... ...++++|+.+.++..+...+ ......... +++ .+++.....
T Consensus 277 -~~~~~~~~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~-~i~~~~~~~-- 343 (417)
T TIGR02800 277 -PGIDTEPSWSPDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGD-LIAFVHREG-- 343 (417)
T ss_pred -CCCCCCEEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCC-EEEEEEccC--
Confidence 111111111112334554433222 247999999988888775221 122223333 455 455544332
Q ss_pred CCCcEEEEEcCCCeEEEeec
Q 010115 273 TLNDLYSLDFETMIWTRIKI 292 (518)
Q Consensus 273 ~~~~v~~yd~~~~~W~~v~~ 292 (518)
....++.+|+.+..++.+..
T Consensus 344 ~~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 344 GGFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred CceEEEEEeCCCCCeEEccC
Confidence 13479999998877776653
No 99
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=90.60 E-value=17 Score=35.06 Aligned_cols=231 Identities=18% Similarity=0.223 Sum_probs=107.5
Q ss_pred CCCCeEEeccCCCCC--CCccceEEEEE--CCEEEEEc--CcCCCCCCC-c-EEEEEcC-CCcEEEcccccccCCCCCCC
Q 010115 72 NSENWMVLSIAGDKP--IPRFNHAAAVI--GNKMIVVG--GESGNGLLD-D-VQVLNFD-RFSWTAASSKLYLSPSSLPL 142 (518)
Q Consensus 72 ~~~~W~~l~~~~~~p--~~R~~~~~~~~--~~~lyv~G--G~~~~~~~~-~-v~~yd~~-~~~W~~~~~~~~~~~~~~~~ 142 (518)
...+|.....-...+ ..+....+.+. +++|+++- +........ . .+....+ ..+|+........... .
T Consensus 28 ~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~---~ 104 (275)
T PF13088_consen 28 GGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFG---N 104 (275)
T ss_dssp CTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCC---S
T ss_pred CCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCcccccccccc---c
Confidence 457799875422333 23344444443 78888875 322211111 1 1355555 4599887642111000 0
Q ss_pred CCCCccceEEEEECCEEEEEcCcCCCCCCceeEEEEECCC-CcEEEeeecCCCC-CCCcceEEEE--ECCEEEEEcccCC
Q 010115 143 KIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTET-ECWSVVEAKGDIP-VARSGHTVVR--ASSVLILFGGEDG 218 (518)
Q Consensus 143 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t-~~W~~~~~~~~~p-~~r~~~~~~~--~~~~iyv~GG~~~ 218 (518)
.........+...++.+++. .+.........+..|.... .+|+.... .+ .......+.+ -++.|+++--..
T Consensus 105 ~~~~~~~~~i~~~~G~l~~~-~~~~~~~~~~~~~~~S~D~G~tW~~~~~---~~~~~~~~e~~~~~~~dG~l~~~~R~~- 179 (275)
T PF13088_consen 105 FSGPGRGPPIQLPDGRLIAP-YYHESGGSFSAFVYYSDDGGKTWSSGSP---IPDGQGECEPSIVELPDGRLLAVFRTE- 179 (275)
T ss_dssp CEECSEEEEEEECTTEEEEE-EEEESSCEEEEEEEEESSTTSSEEEEEE---CECSEEEEEEEEEEETTSEEEEEEEEC-
T ss_pred eeccceeeeeEecCCCEEEE-EeeccccCcceEEEEeCCCCceeecccc---ccccCCcceeEEEECCCCcEEEEEEcc-
Confidence 00011122244447788877 2211111223344455554 45998876 32 2233333333 356888875443
Q ss_pred CCcccCcEEEE-EcC-CCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCC
Q 010115 219 KRRKLNDLHMF-DLK-SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFH 296 (518)
Q Consensus 219 ~~~~~~~~~~y-d~~-t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~ 296 (518)
... .++.+ ... -.+|+..... .+|.+.....+..+.+..++++.........-.++.-.-...+|+........
T Consensus 180 ~~~---~~~~~~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~ 255 (275)
T PF13088_consen 180 GND---DIYISRSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDG 255 (275)
T ss_dssp SST---EEEEEEESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEE
T ss_pred CCC---cEEEEEECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCC
Confidence 211 33333 332 3579986532 45665555555555554466665522111111233333347899876554221
Q ss_pred CCCCcceE-EEEE-CCEEEE
Q 010115 297 PSPRAGCC-GVLC-GTKWYI 314 (518)
Q Consensus 297 p~~r~~~~-~~~~-~~~iyv 314 (518)
+...+++. ++.. +++|||
T Consensus 256 ~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 256 PNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp E-CCEEEEEEEEEETTEEEE
T ss_pred CCCcEECCeeEEeCCCcCCC
Confidence 22234444 3444 679986
No 100
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=90.43 E-value=17 Score=34.88 Aligned_cols=232 Identities=17% Similarity=0.182 Sum_probs=105.2
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE--ECCEEEEEcCcCCCCCCceeEE
Q 010115 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS--WGKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 99 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~ 176 (518)
..+|+.++.. +.+.+||..+.+....-+. .... ..++. .++.+|+.++.. ..+.
T Consensus 43 ~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~----------~~~~---~~~~~~~~g~~l~~~~~~~------~~l~ 98 (300)
T TIGR03866 43 KLLYVCASDS-----DTIQVIDLATGEVIGTLPS----------GPDP---ELFALHPNGKILYIANEDD------NLVT 98 (300)
T ss_pred CEEEEEECCC-----CeEEEEECCCCcEEEeccC----------CCCc---cEEEECCCCCEEEEEcCCC------CeEE
Confidence 4577776532 4688899888765432110 0111 12222 245677665432 2588
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEE
Q 010115 177 TFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (518)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~ 255 (518)
.||+.+.+-... .+.....++++. -++.+++++..+. +.+..||..+.+-......+.. ..+.+.
T Consensus 99 ~~d~~~~~~~~~-----~~~~~~~~~~~~~~dg~~l~~~~~~~-----~~~~~~d~~~~~~~~~~~~~~~----~~~~~~ 164 (300)
T TIGR03866 99 VIDIETRKVLAE-----IPVGVEPEGMAVSPDGKIVVNTSETT-----NMAHFIDTKTYEIVDNVLVDQR----PRFAEF 164 (300)
T ss_pred EEECCCCeEEeE-----eeCCCCcceEEECCCCCEEEEEecCC-----CeEEEEeCCCCeEEEEEEcCCC----ccEEEE
Confidence 899987642211 111111123333 3566666654332 2356678766543322111111 122222
Q ss_pred EECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEE-EeecC--CCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEEE
Q 010115 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT-RIKIR--GFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIF 330 (518)
Q Consensus 256 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-~v~~~--~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~y 330 (518)
.-+++.+++ ++... +.+..||+++.+.. .+... +..+........+.. +..+|+..+.. +.+.+|
T Consensus 165 s~dg~~l~~-~~~~~----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~-----~~i~v~ 234 (300)
T TIGR03866 165 TADGKELWV-SSEIG----GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA-----NRVAVV 234 (300)
T ss_pred CCCCCEEEE-EcCCC----CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC-----CeEEEE
Confidence 334553444 43211 35899998876532 22211 001111111122222 33456654322 358899
Q ss_pred ECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 331 DILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 331 d~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
|..+.+-..... . ... ...+.+.. +...||+..+.. +.+.+||+.+.+
T Consensus 235 d~~~~~~~~~~~-~-----~~~-~~~~~~~~-~g~~l~~~~~~~----~~i~v~d~~~~~ 282 (300)
T TIGR03866 235 DAKTYEVLDYLL-V-----GQR-VWQLAFTP-DEKYLLTTNGVS----NDVSVIDVAALK 282 (300)
T ss_pred ECCCCcEEEEEE-e-----CCC-cceEEECC-CCCEEEEEcCCC----CeEEEEECCCCc
Confidence 987644332111 0 111 11223332 334555444432 268999988765
No 101
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=90.39 E-value=4.9 Score=38.64 Aligned_cols=108 Identities=19% Similarity=0.144 Sum_probs=73.6
Q ss_pred ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC
Q 010115 206 ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM 285 (518)
Q Consensus 206 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 285 (518)
.++.+|.--|..+. +.+.++|+.+.+-.... ++|..-++-.++.++++ ||.+-=. .+..++||+++.
T Consensus 54 ~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~-l~qLTWk-----~~~~f~yd~~tl 120 (264)
T PF05096_consen 54 DDGTLYESTGLYGQ----SSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDK-LYQLTWK-----EGTGFVYDPNTL 120 (264)
T ss_dssp ETTEEEEEECSTTE----EEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTE-EEEEESS-----SSEEEEEETTTT
T ss_pred CCCEEEEeCCCCCc----EEEEEEECCCCcEEEEE---ECCccccceeEEEECCE-EEEEEec-----CCeEEEEccccc
Confidence 57899988777554 67899999998876655 67777777788889988 8887432 235899998764
Q ss_pred eEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCce
Q 010115 286 IWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEW 337 (518)
Q Consensus 286 ~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 337 (518)
+.+... +.+..+.+.+..+..+++--|. +.++.+||++.+=
T Consensus 121 --~~~~~~---~y~~EGWGLt~dg~~Li~SDGS------~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 121 --KKIGTF---PYPGEGWGLTSDGKRLIMSDGS------SRLYFLDPETFKE 161 (264)
T ss_dssp --EEEEEE---E-SSS--EEEECSSCEEEE-SS------SEEEEE-TTT-SE
T ss_pred --eEEEEE---ecCCcceEEEcCCCEEEEECCc------cceEEECCcccce
Confidence 455443 4556788888888889998773 5699999987544
No 102
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=90.29 E-value=18 Score=34.78 Aligned_cols=149 Identities=14% Similarity=0.142 Sum_probs=84.5
Q ss_pred cceEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcc------------eEEEEECCEEEEEcc
Q 010115 148 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG------------HTVVRASSVLILFGG 215 (518)
Q Consensus 148 ~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~------------~~~~~~~~~iyv~GG 215 (518)
.|.+.++.++.+|.--. .++.+.+||+.+++-..... +|.+.+. .-.++.++-|+|+=.
T Consensus 70 ~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~~~~~---L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYa 140 (250)
T PF02191_consen 70 QGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVVARRE---LPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYA 140 (250)
T ss_pred ccCCeEEECCcEEEEec------CCceEEEEECcCCcEEEEEE---CCccccccccceecCCCceEEEEEcCCCEEEEEe
Confidence 46677788988887643 34589999999988652222 3433332 223445566777755
Q ss_pred cCCCCcccCcEEEEEcCCC----cEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEee
Q 010115 216 EDGKRRKLNDLHMFDLKSL----TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIK 291 (518)
Q Consensus 216 ~~~~~~~~~~~~~yd~~t~----~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~ 291 (518)
...... .-.+-+.|+.+. +|.. ..+.+..+. +-++.|. ||+....+... ..-.+.||+.+++=..+.
T Consensus 141 t~~~~g-~ivvskld~~tL~v~~tw~T-----~~~k~~~~n-aFmvCGv-LY~~~s~~~~~-~~I~yafDt~t~~~~~~~ 211 (250)
T PF02191_consen 141 TEDNNG-NIVVSKLDPETLSVEQTWNT-----SYPKRSAGN-AFMVCGV-LYATDSYDTRD-TEIFYAFDTYTGKEEDVS 211 (250)
T ss_pred cCCCCC-cEEEEeeCcccCceEEEEEe-----ccCchhhcc-eeeEeeE-EEEEEECCCCC-cEEEEEEECCCCceecee
Confidence 443311 123455677654 4543 344444443 3455666 89887665432 334689999877655443
Q ss_pred cCCCCCCCCcceEEEEE---CCEEEEEc
Q 010115 292 IRGFHPSPRAGCCGVLC---GTKWYIAG 316 (518)
Q Consensus 292 ~~~~~p~~r~~~~~~~~---~~~iyv~G 316 (518)
.. .+.+-..++++.. +.+||+.-
T Consensus 212 i~--f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 212 IP--FPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred ee--eccccCceEeeeECCCCCeEEEEE
Confidence 32 1222234444444 57888874
No 103
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=90.27 E-value=17 Score=34.57 Aligned_cols=131 Identities=18% Similarity=0.229 Sum_probs=63.5
Q ss_pred CCCCeEEeccCCCCCC-------CccceEEEEECCEEEEEcCcCCCCCCCcEEEEEcC-------CCcEEEcccccccCC
Q 010115 72 NSENWMVLSIAGDKPI-------PRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFD-------RFSWTAASSKLYLSP 137 (518)
Q Consensus 72 ~~~~W~~l~~~~~~p~-------~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~-------~~~W~~~~~~~~~~~ 137 (518)
....|+.-... ..|. .-.-|+.+.+++.=|.+|=..+......+=.+-.. ...=+.++..
T Consensus 113 ~~spW~~teL~-~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~se----- 186 (367)
T PF12217_consen 113 HDSPWRITELG-TIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRRIIPSE----- 186 (367)
T ss_dssp TTS--EEEEEE-S-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEEE--GG-----
T ss_pred ccCCceeeecc-cccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceeeeechhh-----
Confidence 67788765432 2232 34568888888887888743333222333222111 1122223321
Q ss_pred CCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcce--EEEEECCEEEEEcc
Q 010115 138 SSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGH--TVVRASSVLILFGG 215 (518)
Q Consensus 138 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~--~~~~~~~~iyv~GG 215 (518)
-.+.....++-..++.+|+.--...+...-+.+.+-+.....|+.+.. |...... -.+..++.||+||-
T Consensus 187 -----y~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrf----p~nvHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 187 -----YERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRF----PNNVHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp -----G-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-----TT---SS---EEEETTEEEEEEE
T ss_pred -----hccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccc----cccccccCCCceeeCCEEEEEec
Confidence 111223455666799999985444333445578888888889999873 4322222 23568999999987
Q ss_pred cC
Q 010115 216 ED 217 (518)
Q Consensus 216 ~~ 217 (518)
..
T Consensus 258 ER 259 (367)
T PF12217_consen 258 ER 259 (367)
T ss_dssp -S
T ss_pred cc
Confidence 63
No 104
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=89.71 E-value=4.3 Score=34.47 Aligned_cols=85 Identities=16% Similarity=0.226 Sum_probs=56.2
Q ss_pred EECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEE-EcC
Q 010115 154 SWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMF-DLK 232 (518)
Q Consensus 154 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y-d~~ 232 (518)
.+++-+|...-. .......+..||..+.+|+.+...............+.++|+|-++.-........-++|++ |..
T Consensus 3 cinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 3 CINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 457788877665 22334578999999999998874111224455666777899988875544332223567877 456
Q ss_pred CCcEEEee
Q 010115 233 SLTWLPLH 240 (518)
Q Consensus 233 t~~W~~~~ 240 (518)
..+|++..
T Consensus 81 k~~Wsk~~ 88 (129)
T PF08268_consen 81 KQEWSKKH 88 (129)
T ss_pred cceEEEEE
Confidence 77899875
No 105
>PTZ00421 coronin; Provisional
Probab=89.27 E-value=34 Score=36.52 Aligned_cols=154 Identities=16% Similarity=0.157 Sum_probs=73.2
Q ss_pred CEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCc
Q 010115 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (518)
Q Consensus 157 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 235 (518)
+.+++.||.+. .+..||+.+.+-...-. .... .-.++.. .++.+++.|+.+. .+.+||+.+.+
T Consensus 138 ~~iLaSgs~Dg------tVrIWDl~tg~~~~~l~--~h~~--~V~sla~spdG~lLatgs~Dg------~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGADM------VVNVWDVERGKAVEVIK--CHSD--QITSLEWNLDGSLLCTTSKDK------KLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCCC------EEEEEECCCCeEEEEEc--CCCC--ceEEEEEECCCCEEEEecCCC------EEEEEECCCCc
Confidence 45777777643 57888988765322111 0111 1112222 3567777777654 37889998765
Q ss_pred EE-EeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCe--EEEeecCCCCCCCCcceEEEEE--CC
Q 010115 236 WL-PLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLC--GT 310 (518)
Q Consensus 236 W~-~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~v~~~~~~p~~r~~~~~~~~--~~ 310 (518)
-. .+. +. ...+........++. .++..|.+.. .-..+..||+.+.. ...... .. ........+ ++
T Consensus 202 ~v~tl~--~H-~~~~~~~~~w~~~~~-~ivt~G~s~s-~Dr~VklWDlr~~~~p~~~~~~----d~-~~~~~~~~~d~d~ 271 (493)
T PTZ00421 202 IVSSVE--AH-ASAKSQRCLWAKRKD-LIITLGCSKS-QQRQIMLWDTRKMASPYSTVDL----DQ-SSALFIPFFDEDT 271 (493)
T ss_pred EEEEEe--cC-CCCcceEEEEcCCCC-eEEEEecCCC-CCCeEEEEeCCCCCCceeEecc----CC-CCceEEEEEcCCC
Confidence 32 221 11 111111112222334 4454454321 12458888986532 111110 00 111122223 45
Q ss_pred EEEEEcccCCCCCcCeEEEEECCCCceEEe
Q 010115 311 KWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (518)
Q Consensus 311 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 340 (518)
.++++||... ..+.+||+.+......
T Consensus 272 ~~L~lggkgD----g~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 272 NLLYIGSKGE----GNIRCFELMNERLTFC 297 (493)
T ss_pred CEEEEEEeCC----CeEEEEEeeCCceEEE
Confidence 6666666422 2388888888776554
No 106
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.04 E-value=30 Score=35.69 Aligned_cols=262 Identities=11% Similarity=0.035 Sum_probs=126.3
Q ss_pred CCCCeEEeccCCCCCCCccceEEEEE---CCEEEEEcCcCCCCCCCcEEEEEc--CCCcEEEcccccccCCCCCCCCCCC
Q 010115 72 NSENWMVLSIAGDKPIPRFNHAAAVI---GNKMIVVGGESGNGLLDDVQVLNF--DRFSWTAASSKLYLSPSSLPLKIPA 146 (518)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~--~~~~W~~~~~~~~~~~~~~~~~~~~ 146 (518)
...+|+++.. +....+.-..+... .+.-|++|-.. .++-. ...+|++...... .....
T Consensus 73 ~G~~W~q~~~--p~~~~~~L~~V~F~~~d~~~GwAVG~~G--------~IL~T~DGG~tW~~~~~~~~-------~~~~~ 135 (398)
T PLN00033 73 QSSEWEQVDL--PIDPGVVLLDIAFVPDDPTHGFLLGTRQ--------TLLETKDGGKTWVPRSIPSA-------EDEDF 135 (398)
T ss_pred CCCccEEeec--CCCCCCceEEEEeccCCCCEEEEEcCCC--------EEEEEcCCCCCceECccCcc-------ccccc
Confidence 5568999962 11122344455542 35788888622 23332 3469998643110 00111
Q ss_pred -ccceEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCcccC
Q 010115 147 -CRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLN 224 (518)
Q Consensus 147 -r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~ 224 (518)
....++...++..|++|-.. .+++-+-.-.+|+.+.....+|.. ....... ++.++++|.. .
T Consensus 136 ~~~l~~v~f~~~~g~~vG~~G-------~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~-------G 199 (398)
T PLN00033 136 NYRFNSISFKGKEGWIIGKPA-------ILLHTSDGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE-------G 199 (398)
T ss_pred ccceeeeEEECCEEEEEcCce-------EEEEEcCCCCCceECccccCCCCC--ceEEEEECCCceEEEecc-------c
Confidence 12344555577888885432 244444445789987642223333 2233334 3567777632 2
Q ss_pred cEEEEEcCCCcEEEeecCC-CCCCC--------------CCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC-eEE
Q 010115 225 DLHMFDLKSLTWLPLHCTG-TGPSP--------------RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM-IWT 288 (518)
Q Consensus 225 ~~~~yd~~t~~W~~~~~~g-~~p~~--------------r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~-~W~ 288 (518)
.+++-+-.-.+|+.+.... ..+.. -....+....+..++++|-. ..+++-..... .|+
T Consensus 200 ~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~------G~~~~s~d~G~~~W~ 273 (398)
T PLN00033 200 AIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSR------GNFYLTWEPGQPYWQ 273 (398)
T ss_pred eEEEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECC------ccEEEecCCCCcceE
Confidence 2555444556898862110 01111 11122233334335666532 23555443333 489
Q ss_pred EeecCCCCCCCCcceEEEE-ECCEEEEEcccCCCCCcCeEEEEECCCCce-----EEeecCCCCCCCCCCCceEEEEeeC
Q 010115 289 RIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLIFDILKGEW-----SVAITSPSSSVTSNKGFTLVLVQHK 362 (518)
Q Consensus 289 ~v~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W-----~~~~~~~~~~~~~r~~~s~~~~~~~ 362 (518)
.+... .++...++.. .++.++++|.. ..++.-+.....| .++.. ...+.....+.. .
T Consensus 274 ~~~~~----~~~~l~~v~~~~dg~l~l~g~~------G~l~~S~d~G~~~~~~~f~~~~~-----~~~~~~l~~v~~--~ 336 (398)
T PLN00033 274 PHNRA----SARRIQNMGWRADGGLWLLTRG------GGLYVSKGTGLTEEDFDFEEADI-----KSRGFGILDVGY--R 336 (398)
T ss_pred EecCC----CccceeeeeEcCCCCEEEEeCC------ceEEEecCCCCcccccceeeccc-----CCCCcceEEEEE--c
Confidence 88653 3333333333 47788888743 2255555555544 44321 112222233333 2
Q ss_pred CccEEEEEcCCCCCCCCcEEEEEcccCCcccc
Q 010115 363 EKDFLVAFGGIKKEPSNQVEVLSIEKNESSMG 394 (518)
Q Consensus 363 ~~~~l~v~GG~~~~~~~~v~~yd~~~~~w~~~ 394 (518)
+++.+++.|..+ .+..-....+.|...
T Consensus 337 ~d~~~~a~G~~G-----~v~~s~D~G~tW~~~ 363 (398)
T PLN00033 337 SKKEAWAAGGSG-----ILLRSTDGGKSWKRD 363 (398)
T ss_pred CCCcEEEEECCC-----cEEEeCCCCcceeEc
Confidence 456788888764 334444444566654
No 107
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.93 E-value=29 Score=35.33 Aligned_cols=200 Identities=17% Similarity=0.150 Sum_probs=101.1
Q ss_pred EEECCEEEEEcCcCCCCCCCcEEEEEcCCCc--EEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCc
Q 010115 95 AVIGNKMIVVGGESGNGLLDDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDR 172 (518)
Q Consensus 95 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 172 (518)
+..++++|+... + ..++.+|+.+.+ |+..... ............+++||+-....
T Consensus 65 ~~~dg~v~~~~~-~-----G~i~A~d~~~g~~~W~~~~~~-----------~~~~~~~~~~~~~G~i~~g~~~g------ 121 (370)
T COG1520 65 ADGDGTVYVGTR-D-----GNIFALNPDTGLVKWSYPLLG-----------AVAQLSGPILGSDGKIYVGSWDG------ 121 (370)
T ss_pred EeeCCeEEEecC-C-----CcEEEEeCCCCcEEecccCcC-----------cceeccCceEEeCCeEEEecccc------
Confidence 666888998611 1 178999999875 8765441 00011111222267776643332
Q ss_pred eeEEEEECCCC--cEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCC--cEEEeecCCCCCCC
Q 010115 173 VSVWTFDTETE--CWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL--TWLPLHCTGTGPSP 248 (518)
Q Consensus 173 ~~v~~yd~~t~--~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~g~~p~~ 248 (518)
.+++||..+. .|+.-... . .+.....+..++.+|+.- ..+.++.+|..+. .|+.-...+ . ..
T Consensus 122 -~~y~ld~~~G~~~W~~~~~~---~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~-~-~~ 187 (370)
T COG1520 122 -KLYALDASTGTLVWSRNVGG---S-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP-L-SL 187 (370)
T ss_pred -eEEEEECCCCcEEEEEecCC---C-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc-c-cc
Confidence 6899999654 48876542 1 444444555566666642 1255778887754 587543211 1 22
Q ss_pred CCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC--eEEEeecCCCCCCCCcce--EEEEECCEEEEEcccCCCCCc
Q 010115 249 RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGFHPSPRAGC--CGVLCGTKWYIAGGGSRKKRH 324 (518)
Q Consensus 249 r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~v~~~~~~p~~r~~~--~~~~~~~~iyv~GG~~~~~~~ 324 (518)
+.....+ ..+..+|+ |..+ . ...++.+|++++ .|+.-... +..+..- ...+..+.||+-|+.......
T Consensus 188 ~~~~~~~-~~~~~vy~-~~~~--~-~~~~~a~~~~~G~~~w~~~~~~---~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~ 259 (370)
T COG1520 188 SIYGSPA-IASGTVYV-GSDG--Y-DGILYALNAEDGTLKWSQKVSQ---TIGRTAISTTPAVDGGPVYVDGGVYAGSYG 259 (370)
T ss_pred ccccCce-eecceEEE-ecCC--C-cceEEEEEccCCcEeeeeeeec---ccCcccccccccccCceEEECCcEEEEecC
Confidence 2222222 44442444 4332 1 236999999654 57753221 1111100 112223444444432111112
Q ss_pred CeEEEEECCCC--ceEE
Q 010115 325 AETLIFDILKG--EWSV 339 (518)
Q Consensus 325 ~~v~~yd~~~~--~W~~ 339 (518)
..++++|..+. .|+.
T Consensus 260 g~~~~l~~~~G~~~W~~ 276 (370)
T COG1520 260 GKLLCLDADTGELIWSF 276 (370)
T ss_pred CeEEEEEcCCCceEEEE
Confidence 33788887654 5766
No 108
>PLN00181 protein SPA1-RELATED; Provisional
Probab=88.08 E-value=53 Score=37.35 Aligned_cols=140 Identities=10% Similarity=0.144 Sum_probs=68.7
Q ss_pred CEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCCC
Q 010115 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (518)
Q Consensus 157 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 234 (518)
+..++.|+.+. .+..||..+.+-...-. .....-.+++.. ++.+++.||.+.. +.+||+.+.
T Consensus 545 ~~~las~~~Dg------~v~lWd~~~~~~~~~~~----~H~~~V~~l~~~p~~~~~L~Sgs~Dg~------v~iWd~~~~ 608 (793)
T PLN00181 545 KSQVASSNFEG------VVQVWDVARSQLVTEMK----EHEKRVWSIDYSSADPTLLASGSDDGS------VKLWSINQG 608 (793)
T ss_pred CCEEEEEeCCC------eEEEEECCCCeEEEEec----CCCCCEEEEEEcCCCCCEEEEEcCCCE------EEEEECCCC
Confidence 45566666543 57788888765332211 111112233332 4577778776543 778888654
Q ss_pred cE-EEeecCCCCCCCCCCcEEEEE--CCcEEEEEcCCCCCCCCCcEEEEEcCCCe--EEEeecCCCCCCCCcceEEEEEC
Q 010115 235 TW-LPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLCG 309 (518)
Q Consensus 235 ~W-~~~~~~g~~p~~r~~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~v~~~~~~p~~r~~~~~~~~~ 309 (518)
.- ..+. .. ....++.+ .+..+++.|+.++ .+..||+.+.. ...+... .. .-......+
T Consensus 609 ~~~~~~~----~~---~~v~~v~~~~~~g~~latgs~dg-----~I~iwD~~~~~~~~~~~~~h---~~--~V~~v~f~~ 671 (793)
T PLN00181 609 VSIGTIK----TK---ANICCVQFPSESGRSLAFGSADH-----KVYYYDLRNPKLPLCTMIGH---SK--TVSYVRFVD 671 (793)
T ss_pred cEEEEEe----cC---CCeEEEEEeCCCCCEEEEEeCCC-----eEEEEECCCCCccceEecCC---CC--CEEEEEEeC
Confidence 32 2221 11 11112222 2233677776554 58999986542 2222111 11 111222236
Q ss_pred CEEEEEcccCCCCCcCeEEEEECCC
Q 010115 310 TKWYIAGGGSRKKRHAETLIFDILK 334 (518)
Q Consensus 310 ~~iyv~GG~~~~~~~~~v~~yd~~~ 334 (518)
+..++.|+.++ .+.++|+..
T Consensus 672 ~~~lvs~s~D~-----~ikiWd~~~ 691 (793)
T PLN00181 672 SSTLVSSSTDN-----TLKLWDLSM 691 (793)
T ss_pred CCEEEEEECCC-----EEEEEeCCC
Confidence 66677776543 377788754
No 109
>PTZ00421 coronin; Provisional
Probab=87.41 E-value=44 Score=35.64 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=34.6
Q ss_pred CEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCe
Q 010115 208 SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (518)
Q Consensus 208 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (518)
+.+++.||.+. .+.+||+.+.+-...- ... ...-.+++.. ++. +++.|+.++ .+..||+.+..
T Consensus 138 ~~iLaSgs~Dg------tVrIWDl~tg~~~~~l---~~h-~~~V~sla~spdG~-lLatgs~Dg-----~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGADM------VVNVWDVERGKAVEVI---KCH-SDQITSLEWNLDGS-LLCTTSKDK-----KLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCCC------EEEEEECCCCeEEEEE---cCC-CCceEEEEEECCCC-EEEEecCCC-----EEEEEECCCCc
Confidence 35777777654 3778898776432211 101 1111223333 344 777777654 48899987654
No 110
>PRK04043 tolB translocation protein TolB; Provisional
Probab=86.96 E-value=42 Score=34.95 Aligned_cols=185 Identities=9% Similarity=0.074 Sum_probs=99.1
Q ss_pred eEEEEECCCCcEEEeeecCCCCCCCcceEEEEEC-CEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCc
Q 010115 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (518)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~ 252 (518)
++|++|+.+++=+.+.. .+ .........-+ .+|.+.-..++ ..++|.+|+.+..++++. ..+. ....
T Consensus 214 ~Iyv~dl~tg~~~~lt~---~~-g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT---~~~~-~d~~ 281 (419)
T PRK04043 214 TLYKYNLYTGKKEKIAS---SQ-GMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQIT---NYPG-IDVN 281 (419)
T ss_pred EEEEEECCCCcEEEEec---CC-CcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcc---cCCC-ccCc
Confidence 79999999987666653 11 11111112223 45655433322 368999999999999885 2222 1111
Q ss_pred EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECC-EEEEEcccCCCC---CcCeEE
Q 010115 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGT-KWYIAGGGSRKK---RHAETL 328 (518)
Q Consensus 253 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~---~~~~v~ 328 (518)
....-+++.|++.....+ ..+||++|+.+.+.+++...+. ... ...-++ .|.......... ...+++
T Consensus 282 p~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I~ 352 (419)
T PRK04043 282 GNFVEDDKRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSRETNNEFGKNTFNLY 352 (419)
T ss_pred cEECCCCCEEEEEECCCC---CceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEcCCCcccCCCCcEEE
Confidence 122234544666543322 3589999999998887765322 111 222244 444443322111 235799
Q ss_pred EEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 329 IFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 329 ~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
++|++++.++.+.... . .. ...+..++ ..|+..... .....++++++..+.
T Consensus 353 v~d~~~g~~~~LT~~~------~-~~-~p~~SPDG-~~I~f~~~~--~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 353 LISTNSDYIRRLTANG------V-NQ-FPRFSSDG-GSIMFIKYL--GNQSALGIIRLNYNK 403 (419)
T ss_pred EEECCCCCeEECCCCC------C-cC-CeEECCCC-CEEEEEEcc--CCcEEEEEEecCCCe
Confidence 9999999998876421 1 11 12233333 334433322 223467888876654
No 111
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=86.91 E-value=26 Score=32.54 Aligned_cols=188 Identities=12% Similarity=0.110 Sum_probs=84.8
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (518)
++..+++++.+ ..+.+||..+......-. .....-.++... ++.+++.|+.. ..+.
T Consensus 62 ~~~~l~~~~~~-----~~i~i~~~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~~~~~~~~------~~i~ 118 (289)
T cd00200 62 DGTYLASGSSD-----KTIRLWDLETGECVRTLT------------GHTSYVSSVAFSPDGRILSSSSRD------KTIK 118 (289)
T ss_pred CCCEEEEEcCC-----CeEEEEEcCcccceEEEe------------ccCCcEEEEEEcCCCCEEEEecCC------CeEE
Confidence 34466666643 468888887752211111 001111222222 34666666632 2588
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEEEC-CEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEE
Q 010115 177 TFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (518)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~ 255 (518)
.||+.+.+-...-. .....-.++.... +.+++.|..+ ..+.+||+.+.+-...- ... ...-.++.
T Consensus 119 ~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~~~~~~---~~~-~~~i~~~~ 184 (289)
T cd00200 119 VWDVETGKCLTTLR----GHTDWVNSVAFSPDGTFVASSSQD------GTIKLWDLRTGKCVATL---TGH-TGEVNSVA 184 (289)
T ss_pred EEECCCcEEEEEec----cCCCcEEEEEEcCcCCEEEEEcCC------CcEEEEEccccccceeE---ecC-ccccceEE
Confidence 89988654332211 1111122333333 3444444322 34888888644322111 111 11122333
Q ss_pred EECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEEC-CEEEEEcccCCCCCcCeEEEEECCC
Q 010115 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCG-TKWYIAGGGSRKKRHAETLIFDILK 334 (518)
Q Consensus 256 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~ 334 (518)
...+...+++++.+ +.+..||..+......-. .....-.++.... +.+++.++.+ ..+.+||..+
T Consensus 185 ~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~i~~~~~ 250 (289)
T cd00200 185 FSPDGEKLLSSSSD-----GTIKLWDLSTGKCLGTLR----GHENGVNSVAFSPDGYLLASGSED-----GTIRVWDLRT 250 (289)
T ss_pred ECCCcCEEEEecCC-----CcEEEEECCCCceecchh----hcCCceEEEEEcCCCcEEEEEcCC-----CcEEEEEcCC
Confidence 44443245555543 358899987643322211 1111122333333 4555555423 3488898876
Q ss_pred Cc
Q 010115 335 GE 336 (518)
Q Consensus 335 ~~ 336 (518)
..
T Consensus 251 ~~ 252 (289)
T cd00200 251 GE 252 (289)
T ss_pred ce
Confidence 43
No 112
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=86.46 E-value=39 Score=34.06 Aligned_cols=248 Identities=15% Similarity=0.177 Sum_probs=118.9
Q ss_pred EEcCcCCCCCCCcEEE--EEcCCCcEEEcccccccCCCCCCCCCCCccceE-EEE--ECCEEEEEcCcCCCCCCceeEEE
Q 010115 103 VVGGESGNGLLDDVQV--LNFDRFSWTAASSKLYLSPSSLPLKIPACRGHS-LIS--WGKKVLLVGGKTDSGSDRVSVWT 177 (518)
Q Consensus 103 v~GG~~~~~~~~~v~~--yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~-~~~--~~~~iyv~GG~~~~~~~~~~v~~ 177 (518)
++|++.. .....++. ||..+.+++.+..... -...+ ++. .++.||+..... .....-..+.
T Consensus 3 ~vgsy~~-~~~~gI~~~~~d~~~g~l~~~~~~~~------------~~~Ps~l~~~~~~~~LY~~~e~~-~~~g~v~~~~ 68 (345)
T PF10282_consen 3 YVGSYTN-GKGGGIYVFRFDEETGTLTLVQTVAE------------GENPSWLAVSPDGRRLYVVNEGS-GDSGGVSSYR 68 (345)
T ss_dssp EEEECCS-SSSTEEEEEEEETTTTEEEEEEEEEE------------SSSECCEEE-TTSSEEEEEETTS-STTTEEEEEE
T ss_pred EEEcCCC-CCCCcEEEEEEcCCCCCceEeeeecC------------CCCCceEEEEeCCCEEEEEEccc-cCCCCEEEEE
Confidence 3455543 22344544 5558888888765211 01122 222 357888886543 1122234556
Q ss_pred EECCCCcEEEeeecCCCCCCCcceEEEEE---CCEEEEEcccCCCCcccCcEEEEEcCCC-cEEEee----c--CCCC--
Q 010115 178 FDTETECWSVVEAKGDIPVARSGHTVVRA---SSVLILFGGEDGKRRKLNDLHMFDLKSL-TWLPLH----C--TGTG-- 245 (518)
Q Consensus 178 yd~~t~~W~~~~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~----~--~g~~-- 245 (518)
.+..+.+.+.+.. .+......+.+.+ +..||+.- +. ...+.+|++..+ +-.... . .++-
T Consensus 69 i~~~~g~L~~~~~---~~~~g~~p~~i~~~~~g~~l~van-y~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~ 139 (345)
T PF10282_consen 69 IDPDTGTLTLLNS---VPSGGSSPCHIAVDPDGRFLYVAN-YG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPD 139 (345)
T ss_dssp EETTTTEEEEEEE---EEESSSCEEEEEECTTSSEEEEEE-TT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTT
T ss_pred ECCCcceeEEeee---eccCCCCcEEEEEecCCCEEEEEE-cc-----CCeEEEEEccCCcccceeeeecccCCCCCccc
Confidence 6666678887765 3422222233333 35666652 11 245777887664 222211 0 1111
Q ss_pred -CCCCCCcEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCe--EEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCC
Q 010115 246 -PSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSR 320 (518)
Q Consensus 246 -p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~ 320 (518)
...-.-|.+.... ++.+|+..= -.+.|+.|+.+... .........++..--.|.+..- +..+||+.-.+
T Consensus 140 rq~~~h~H~v~~~pdg~~v~v~dl-----G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s- 213 (345)
T PF10282_consen 140 RQEGPHPHQVVFSPDGRFVYVPDL-----GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS- 213 (345)
T ss_dssp TTSSTCEEEEEE-TTSSEEEEEET-----TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT-
T ss_pred ccccccceeEEECCCCCEEEEEec-----CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC-
Confidence 1223345555554 455666531 13579999887655 5543322111111112333222 45789987544
Q ss_pred CCCcCeEEEEECC--CCceEEeecCCCC--CCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 010115 321 KKRHAETLIFDIL--KGEWSVAITSPSS--SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (518)
Q Consensus 321 ~~~~~~v~~yd~~--~~~W~~~~~~~~~--~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~ 388 (518)
+.+.+|+.. +..++.+...+.- ........+.+.+. ++..+||+.-.. .+.|.+|++..
T Consensus 214 ----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~is-pdg~~lyvsnr~----~~sI~vf~~d~ 276 (345)
T PF10282_consen 214 ----NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAIS-PDGRFLYVSNRG----SNSISVFDLDP 276 (345)
T ss_dssp ----TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE--TTSSEEEEEECT----TTEEEEEEECT
T ss_pred ----CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEe-cCCCEEEEEecc----CCEEEEEEEec
Confidence 346555544 7777665432211 11122233444443 455678874422 45788998843
No 113
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.72 E-value=52 Score=34.03 Aligned_cols=173 Identities=18% Similarity=0.199 Sum_probs=87.7
Q ss_pred ECCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEE
Q 010115 97 IGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 97 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~ 176 (518)
.++.+++.|+.+. -+..+|..+..= +..-. ....-.+..++...+++|++.||+++ .|-
T Consensus 121 ~d~t~l~s~sDd~-----v~k~~d~s~a~v-~~~l~---------~htDYVR~g~~~~~~~hivvtGsYDg------~vr 179 (487)
T KOG0310|consen 121 QDNTMLVSGSDDK-----VVKYWDLSTAYV-QAELS---------GHTDYVRCGDISPANDHIVVTGSYDG------KVR 179 (487)
T ss_pred cCCeEEEecCCCc-----eEEEEEcCCcEE-EEEec---------CCcceeEeeccccCCCeEEEecCCCc------eEE
Confidence 5788999998542 244556655542 21111 01111122234445789999999976 577
Q ss_pred EEECCCC-cEEEeeecCCCCCCCcceEEEEEC-CEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCc--
Q 010115 177 TFDTETE-CWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH-- 252 (518)
Q Consensus 177 ~yd~~t~-~W~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~-- 252 (518)
.||+.+. .|..--. ...|..+ .++.-+ ..|...|| +.+-++|+.+.. .++..+..|
T Consensus 180 l~DtR~~~~~v~eln-hg~pVe~---vl~lpsgs~iasAgG--------n~vkVWDl~~G~--------qll~~~~~H~K 239 (487)
T KOG0310|consen 180 LWDTRSLTSRVVELN-HGCPVES---VLALPSGSLIASAGG--------NSVKVWDLTTGG--------QLLTSMFNHNK 239 (487)
T ss_pred EEEeccCCceeEEec-CCCceee---EEEcCCCCEEEEcCC--------CeEEEEEecCCc--------eehhhhhcccc
Confidence 7888877 4433221 1223221 112223 34444454 335566665322 222222212
Q ss_pred ---EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEE-ECCEEEEEcccCC
Q 010115 253 ---VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSR 320 (518)
Q Consensus 253 ---~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~ 320 (518)
+.....+..=++.||.+.. +-+|| +..|+.+.... .|.|-. ++++ -++.-.++|..++
T Consensus 240 tVTcL~l~s~~~rLlS~sLD~~-----VKVfd--~t~~Kvv~s~~-~~~pvL--siavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 240 TVTCLRLASDSTRLLSGSLDRH-----VKVFD--TTNYKVVHSWK-YPGPVL--SIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred eEEEEEeecCCceEeecccccc-----eEEEE--ccceEEEEeee-ccccee--eEEecCCCceEEEecccc
Confidence 2222332224677776653 78888 55677776652 133332 3333 3778888887654
No 114
>PLN00181 protein SPA1-RELATED; Provisional
Probab=84.43 E-value=80 Score=35.91 Aligned_cols=144 Identities=14% Similarity=0.164 Sum_probs=68.7
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcE-EEeeecCCCCCCCcceEEEE--ECCEEEEEcccCCCCcccCcEEEEEcC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECW-SVVEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLK 232 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~ 232 (518)
++.+++.||.+. .+..||+.+..- ..+.. .. .-.++.. .++.+++.|+.++ .+.+||+.
T Consensus 587 ~~~~L~Sgs~Dg------~v~iWd~~~~~~~~~~~~----~~--~v~~v~~~~~~g~~latgs~dg------~I~iwD~~ 648 (793)
T PLN00181 587 DPTLLASGSDDG------SVKLWSINQGVSIGTIKT----KA--NICCVQFPSESGRSLAFGSADH------KVYYYDLR 648 (793)
T ss_pred CCCEEEEEcCCC------EEEEEECCCCcEEEEEec----CC--CeEEEEEeCCCCCEEEEEeCCC------eEEEEECC
Confidence 456778887653 577888876542 22211 11 1111211 2467777777553 48889986
Q ss_pred CCc--EEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC----eEEEeecCCCCCCCCcceEEE
Q 010115 233 SLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM----IWTRIKIRGFHPSPRAGCCGV 306 (518)
Q Consensus 233 t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~----~W~~v~~~~~~p~~r~~~~~~ 306 (518)
+.+ ...+. +. ...-..+...++. .++.|+.++ .+-.||+... .|..+..... ........+.
T Consensus 649 ~~~~~~~~~~--~h---~~~V~~v~f~~~~-~lvs~s~D~-----~ikiWd~~~~~~~~~~~~l~~~~g-h~~~i~~v~~ 716 (793)
T PLN00181 649 NPKLPLCTMI--GH---SKTVSYVRFVDSS-TLVSSSTDN-----TLKLWDLSMSISGINETPLHSFMG-HTNVKNFVGL 716 (793)
T ss_pred CCCccceEec--CC---CCCEEEEEEeCCC-EEEEEECCC-----EEEEEeCCCCccccCCcceEEEcC-CCCCeeEEEE
Confidence 543 21221 00 0011122334555 566666543 3777776532 2333322110 0111111122
Q ss_pred EECCEEEEEcccCCCCCcCeEEEEECCC
Q 010115 307 LCGTKWYIAGGGSRKKRHAETLIFDILK 334 (518)
Q Consensus 307 ~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 334 (518)
..++.+++.|+.++ .+.+|+...
T Consensus 717 s~~~~~lasgs~D~-----~v~iw~~~~ 739 (793)
T PLN00181 717 SVSDGYIATGSETN-----EVFVYHKAF 739 (793)
T ss_pred cCCCCEEEEEeCCC-----EEEEEECCC
Confidence 22566777777554 377777654
No 115
>PRK04043 tolB translocation protein TolB; Provisional
Probab=83.68 E-value=59 Score=33.83 Aligned_cols=191 Identities=13% Similarity=0.071 Sum_probs=102.7
Q ss_pred CcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecC
Q 010115 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (518)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~ 192 (518)
.++|++|+.+.+=+.+... +......... .+.+|++.-...+ ..++|.+|..+..++.+..
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~------------~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~-- 274 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASS------------QGMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITN-- 274 (419)
T ss_pred CEEEEEECCCCcEEEEecC------------CCcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEccc--
Confidence 3789999988765555431 1111111122 2446655533321 3479999999999988864
Q ss_pred CCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCC
Q 010115 193 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK 272 (518)
Q Consensus 193 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~ 272 (518)
.+..-......-.+.+|+..-...+ ..+++++|+.+.+.+++...+. ... ...-+++.|..........
T Consensus 275 -~~~~d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 275 -YPGIDVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred -CCCccCccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEcCCCcc
Confidence 2211111111123456776644322 3579999999999887753221 222 3333555344433322111
Q ss_pred ---CCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCE-EEEEcccCCCCCcCeEEEEECCCCceEEee
Q 010115 273 ---TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTK-WYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (518)
Q Consensus 273 ---~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 341 (518)
...+++.+|+++..++.+...+ ........-+++ |+..... .....++.++++...=..++
T Consensus 344 ~~~~~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~---~~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYL---GNQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred cCCCCcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEcc---CCcEEEEEEecCCCeeEEee
Confidence 2358999999999998886532 111122222554 4444322 22346788888776555554
No 116
>PRK02889 tolB translocation protein TolB; Provisional
Probab=83.61 E-value=60 Score=33.81 Aligned_cols=146 Identities=10% Similarity=0.041 Sum_probs=75.8
Q ss_pred eeEEEEECCCCcEEEeeecCCCCCCCcceEEEEEC-CEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCC
Q 010115 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (518)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~ 251 (518)
..+|.+|+.+++=+.+.. .+.. .......-+ ++|++....++ ..++|.+|..+...+++.. .. ....
T Consensus 220 ~~I~~~dl~~g~~~~l~~---~~g~-~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~---~~-~~~~ 287 (427)
T PRK02889 220 PVVYVHDLATGRRRVVAN---FKGS-NSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQ---SS-GIDT 287 (427)
T ss_pred cEEEEEECCCCCEEEeec---CCCC-ccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCC---CC-CCCc
Confidence 369999999887555542 2211 111112223 45555433332 2679999998877766642 11 1111
Q ss_pred cEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEE-ECC-EEEEEcccCCCCCcCeEEE
Q 010115 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGT-KWYIAGGGSRKKRHAETLI 329 (518)
Q Consensus 252 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~v~~ 329 (518)
.....-+++.|++.....+ ..++|.++..+...+.+...+ ........ -++ .|+......+ ...+++
T Consensus 288 ~~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~~g---~~~I~v 356 (427)
T PRK02889 288 EPFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYISRVGG---AFKLYV 356 (427)
T ss_pred CeEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEEEccCC---cEEEEE
Confidence 1222334554444322211 247999998888777775331 11111122 244 4444333221 136899
Q ss_pred EECCCCceEEee
Q 010115 330 FDILKGEWSVAI 341 (518)
Q Consensus 330 yd~~~~~W~~~~ 341 (518)
+|+.+...+.+.
T Consensus 357 ~d~~~g~~~~lt 368 (427)
T PRK02889 357 QDLATGQVTALT 368 (427)
T ss_pred EECCCCCeEEcc
Confidence 999988877764
No 117
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=81.97 E-value=81 Score=34.14 Aligned_cols=117 Identities=16% Similarity=0.226 Sum_probs=62.9
Q ss_pred EEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCe-EEEeecCCCCCCCCcceEEEEE---CCEEEEEcccCCCCCcCeEEE
Q 010115 254 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI-WTRIKIRGFHPSPRAGCCGVLC---GTKWYIAGGGSRKKRHAETLI 329 (518)
Q Consensus 254 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~~v~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~ 329 (518)
++...+..++.+|-... -.+|++.++.+. =+.+.. .|..+...+.... +++++++- ....+++.
T Consensus 388 ~aiSPdg~~Ia~st~~~----~~iy~L~~~~~vk~~~v~~---~~~~~~~a~~i~ftid~~k~~~~s-----~~~~~le~ 455 (691)
T KOG2048|consen 388 AAISPDGNLIAISTVSR----TKIYRLQPDPNVKVINVDD---VPLALLDASAISFTIDKNKLFLVS-----KNIFSLEE 455 (691)
T ss_pred eccCCCCCEEEEeeccc----eEEEEeccCcceeEEEecc---chhhhccceeeEEEecCceEEEEe-----cccceeEE
Confidence 33333333677664321 135555554422 222322 3666655554443 67777765 33456788
Q ss_pred EECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 330 FDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 330 yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
++.++.+-.++...... +. ...-+..++ ..+.++|-+.++.. .+++|++++.+
T Consensus 456 ~el~~ps~kel~~~~~~-~~-~~~I~~l~~-SsdG~yiaa~~t~g-----~I~v~nl~~~~ 508 (691)
T KOG2048|consen 456 FELETPSFKELKSIQSQ-AK-CPSISRLVV-SSDGNYIAAISTRG-----QIFVYNLETLE 508 (691)
T ss_pred EEecCcchhhhhccccc-cC-CCcceeEEE-cCCCCEEEEEeccc-----eEEEEEcccce
Confidence 88888777766432211 11 111222222 23557888888655 89999999887
No 118
>PRK03629 tolB translocation protein TolB; Provisional
Probab=80.67 E-value=77 Score=33.05 Aligned_cols=147 Identities=16% Similarity=0.125 Sum_probs=77.2
Q ss_pred eeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCc
Q 010115 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (518)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~ 252 (518)
..++.+|+.+++-+.+.. .+..-......-.+.+|++.....+ ..+++.+|+++.+.+++.. .+.. ..
T Consensus 223 ~~i~i~dl~~G~~~~l~~---~~~~~~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~---~~~~--~~ 290 (429)
T PRK03629 223 SALVIQTLANGAVRQVAS---FPRHNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTD---GRSN--NT 290 (429)
T ss_pred cEEEEEECCCCCeEEccC---CCCCcCCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccC---CCCC--cC
Confidence 468999998887666543 2221111111112345655433222 2359999999988877752 2111 11
Q ss_pred EEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECC-EEEEEcccCCCCCcCeEEEE
Q 010115 253 VAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGT-KWYIAGGGSRKKRHAETLIF 330 (518)
Q Consensus 253 ~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~y 330 (518)
..... +++.|+......+ ..++|.+|+++..-+++...+ .........-++ .|++.+...+ ..+++++
T Consensus 291 ~~~wSPDG~~I~f~s~~~g---~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g---~~~I~~~ 360 (429)
T PRK03629 291 EPTWFPDSQNLAYTSDQAG---RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNGG---QQHIAKQ 360 (429)
T ss_pred ceEECCCCCEEEEEeCCCC---CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccCC---CceEEEE
Confidence 22223 4443333322211 247999999888777764321 111111112244 4444433222 2468999
Q ss_pred ECCCCceEEee
Q 010115 331 DILKGEWSVAI 341 (518)
Q Consensus 331 d~~~~~W~~~~ 341 (518)
|++++.++.+.
T Consensus 361 dl~~g~~~~Lt 371 (429)
T PRK03629 361 DLATGGVQVLT 371 (429)
T ss_pred ECCCCCeEEeC
Confidence 99999988775
No 119
>PRK02889 tolB translocation protein TolB; Provisional
Probab=80.14 E-value=79 Score=32.90 Aligned_cols=188 Identities=7% Similarity=-0.021 Sum_probs=89.7
Q ss_pred eeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCc
Q 010115 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (518)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~ 252 (518)
..+|..|......+.+.. -+..-.... ..-+++.+++...... ...+|++|+.+.+=+.+. ..+. ....
T Consensus 176 ~~L~~~D~dG~~~~~l~~---~~~~v~~p~-wSPDG~~la~~s~~~~---~~~I~~~dl~~g~~~~l~---~~~g-~~~~ 244 (427)
T PRK02889 176 YQLQISDADGQNAQSALS---SPEPIISPA-WSPDGTKLAYVSFESK---KPVVYVHDLATGRRRVVA---NFKG-SNSA 244 (427)
T ss_pred cEEEEECCCCCCceEecc---CCCCcccce-EcCCCCEEEEEEccCC---CcEEEEEECCCCCEEEee---cCCC-Cccc
Confidence 468888886655554432 111111111 1223443334332221 256999999887665554 2221 1111
Q ss_pred EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECC-EEEEEcccCCCCCcCeEEEEE
Q 010115 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGT-KWYIAGGGSRKKRHAETLIFD 331 (518)
Q Consensus 253 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd 331 (518)
....-+++.|++....++ ..++|.+|..+...+++... . .........-++ +|++..... ...++|.+|
T Consensus 245 ~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~---~-~~~~~~~wSpDG~~l~f~s~~~---g~~~Iy~~~ 314 (427)
T PRK02889 245 PAWSPDGRTLAVALSRDG---NSQIYTVNADGSGLRRLTQS---S-GIDTEPFFSPDGRSIYFTSDRG---GAPQIYRMP 314 (427)
T ss_pred eEECCCCCEEEEEEccCC---CceEEEEECCCCCcEECCCC---C-CCCcCeEEcCCCCEEEEEecCC---CCcEEEEEE
Confidence 222234444544333222 35799999988776666432 1 111111222244 454432211 125689999
Q ss_pred CCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCc
Q 010115 332 ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (518)
Q Consensus 332 ~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~w 391 (518)
..+...+.+.... ..... ..+.. +...|+.....++. ..++++|+.+.+.
T Consensus 315 ~~~g~~~~lt~~g------~~~~~-~~~Sp-DG~~Ia~~s~~~g~--~~I~v~d~~~g~~ 364 (427)
T PRK02889 315 ASGGAAQRVTFTG------SYNTS-PRISP-DGKLLAYISRVGGA--FKLYVQDLATGQV 364 (427)
T ss_pred CCCCceEEEecCC------CCcCc-eEECC-CCCEEEEEEccCCc--EEEEEEECCCCCe
Confidence 8888777764211 11111 22332 23445443333222 3688888876553
No 120
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=79.57 E-value=68 Score=31.80 Aligned_cols=138 Identities=18% Similarity=0.207 Sum_probs=78.3
Q ss_pred CEEEEEcCcCCCCC---Cc-eeEEEEECCCC-----cEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEE
Q 010115 157 KKVLLVGGKTDSGS---DR-VSVWTFDTETE-----CWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 227 (518)
Q Consensus 157 ~~iyv~GG~~~~~~---~~-~~v~~yd~~t~-----~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 227 (518)
...+++|-...... .. ..++.|+.... +++.+.. ....-.-.+++.++++|.+.-| +.+.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~---~~~~g~V~ai~~~~~~lv~~~g--------~~l~ 110 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS---TEVKGPVTAICSFNGRLVVAVG--------NKLY 110 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE---EEESS-EEEEEEETTEEEEEET--------TEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE---EeecCcceEhhhhCCEEEEeec--------CEEE
Confidence 45666665432111 22 56888988885 5665543 2223334566778899666544 4578
Q ss_pred EEEcCCCc-EEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEE
Q 010115 228 MFDLKSLT-WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV 306 (518)
Q Consensus 228 ~yd~~t~~-W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~ 306 (518)
+|++...+ +.... ....+-...++.+.++. +++|-.-.+ -.++.|+.+..+-..++.. ..++...++.
T Consensus 111 v~~l~~~~~l~~~~---~~~~~~~i~sl~~~~~~--I~vgD~~~s---v~~~~~~~~~~~l~~va~d---~~~~~v~~~~ 179 (321)
T PF03178_consen 111 VYDLDNSKTLLKKA---FYDSPFYITSLSVFKNY--ILVGDAMKS---VSLLRYDEENNKLILVARD---YQPRWVTAAE 179 (321)
T ss_dssp EEEEETTSSEEEEE---EE-BSSSEEEEEEETTE--EEEEESSSS---EEEEEEETTTE-EEEEEEE---SS-BEEEEEE
T ss_pred EEEccCcccchhhh---eecceEEEEEEeccccE--EEEEEcccC---EEEEEEEccCCEEEEEEec---CCCccEEEEE
Confidence 88888887 88876 34334344455556553 445533221 1355678766667777765 5677777776
Q ss_pred EE-CCEEEEEcc
Q 010115 307 LC-GTKWYIAGG 317 (518)
Q Consensus 307 ~~-~~~iyv~GG 317 (518)
.+ ++. .++++
T Consensus 180 ~l~d~~-~~i~~ 190 (321)
T PF03178_consen 180 FLVDED-TIIVG 190 (321)
T ss_dssp EE-SSS-EEEEE
T ss_pred EecCCc-EEEEE
Confidence 66 655 44444
No 121
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=77.51 E-value=95 Score=32.32 Aligned_cols=186 Identities=10% Similarity=0.100 Sum_probs=96.4
Q ss_pred CceeEEEEECCCCcEEEeeecCCCCCCCcceEEE--EECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCC
Q 010115 171 DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV--RASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSP 248 (518)
Q Consensus 171 ~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~ 248 (518)
...+++.++.+.++-+.+.--| |...-++ .-++.|+|.--....-.....++..+...-+...++ .+
T Consensus 105 ~taDly~v~~e~Ge~kRiTyfG-----r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~Ln------lG 173 (668)
T COG4946 105 QTADLYVVPSEDGEAKRITYFG-----RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLN------LG 173 (668)
T ss_pred ccccEEEEeCCCCcEEEEEEec-----cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeecc------CC
Confidence 3458999999999988887632 2222222 235677776433222111223333333333333332 11
Q ss_pred CCCcEEEEECCcEEEEEcCCC---------CCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccC
Q 010115 249 RSNHVAALYDDKNLLIFGGSS---------KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGS 319 (518)
Q Consensus 249 r~~~~~~~~~~~~lyv~GG~~---------~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 319 (518)
-.+..++.+. +.++|-.. ....-..+|.=.....+.+++-.+ +. .-.+-+.++++||.+--..
T Consensus 174 --pathiv~~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl---~~--~vS~PmIV~~RvYFlsD~e 245 (668)
T COG4946 174 --PATHIVIKDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDL---DG--NVSSPMIVGERVYFLSDHE 245 (668)
T ss_pred --ceeeEEEeCC-EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeec---CC--CcCCceEEcceEEEEeccc
Confidence 1234456677 56666322 122345677766666677777654 21 1123456799999986544
Q ss_pred CCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCccc
Q 010115 320 RKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSM 393 (518)
Q Consensus 320 ~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~w~~ 393 (518)
+. ..+|--|++.+--++-..... --+|. .+..++.-+|-.|| ++|.|||+++.-..
T Consensus 246 G~---GnlYSvdldGkDlrrHTnFtd--YY~R~------~nsDGkrIvFq~~G-------dIylydP~td~lek 301 (668)
T COG4946 246 GV---GNLYSVDLDGKDLRRHTNFTD--YYPRN------ANSDGKRIVFQNAG-------DIYLYDPETDSLEK 301 (668)
T ss_pred Cc---cceEEeccCCchhhhcCCchh--ccccc------cCCCCcEEEEecCC-------cEEEeCCCcCccee
Confidence 33 346666776655544221111 11121 11224444454555 78888888876433
No 122
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=76.54 E-value=80 Score=30.94 Aligned_cols=143 Identities=13% Similarity=0.088 Sum_probs=74.6
Q ss_pred ceeEEEEECCCCcEEEeeecC-CCCCCCcceEE-EE---ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCC
Q 010115 172 RVSVWTFDTETECWSVVEAKG-DIPVARSGHTV-VR---ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP 246 (518)
Q Consensus 172 ~~~v~~yd~~t~~W~~~~~~~-~~p~~r~~~~~-~~---~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p 246 (518)
.+.|..||.++++-+.+-..+ .-+..-++-.. .. +++.|++.=+-. ..---+|..|.++..-+.+. .-|
T Consensus 77 YSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DG---h~nLGvy~ldr~~g~~~~L~---~~p 150 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADG---HANLGVYSLDRRTGKAEKLS---SNP 150 (339)
T ss_pred cceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecCC---cceeeeEEEcccCCceeecc---CCC
Confidence 346899999988733332211 11211122111 11 357888763321 22345888999898888886 344
Q ss_pred CCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeE--EEeecC----CCCCCCCcceEEEEECCEEEEEcccCC
Q 010115 247 SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW--TRIKIR----GFHPSPRAGCCGVLCGTKWYIAGGGSR 320 (518)
Q Consensus 247 ~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W--~~v~~~----~~~p~~r~~~~~~~~~~~iyv~GG~~~ 320 (518)
... .+.+++.. ++-+ .+-..-.+.+.+||+.+++| +..... +.....|..-.++...+++|.|=+.
T Consensus 151 s~K---G~~~~D~a-~F~i--~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rG-- 222 (339)
T PF09910_consen 151 SLK---GTLVHDYA-CFGI--NNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRG-- 222 (339)
T ss_pred CcC---ceEeeeeE-EEec--cccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEEec--
Confidence 332 23333322 3322 22233457899999999999 333321 1111223334455567777665221
Q ss_pred CCCcCeEEEEECC
Q 010115 321 KKRHAETLIFDIL 333 (518)
Q Consensus 321 ~~~~~~v~~yd~~ 333 (518)
-+.+.||.
T Consensus 223 -----Gi~vgnP~ 230 (339)
T PF09910_consen 223 -----GIFVGNPY 230 (339)
T ss_pred -----cEEEeCCC
Confidence 16667765
No 123
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=75.62 E-value=77 Score=30.32 Aligned_cols=266 Identities=18% Similarity=0.219 Sum_probs=110.9
Q ss_pred EEEECCEEEE--EcCcC-CCCCCCcEEEEEcC-CCcEEEcccccccCCCCCCCCCCCccc--eEEEEECCEEEEEcCc-C
Q 010115 94 AAVIGNKMIV--VGGES-GNGLLDDVQVLNFD-RFSWTAASSKLYLSPSSLPLKIPACRG--HSLISWGKKVLLVGGK-T 166 (518)
Q Consensus 94 ~~~~~~~lyv--~GG~~-~~~~~~~v~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~~r~~--~~~~~~~~~iyv~GG~-~ 166 (518)
+.++++.||. ++|.. +-..+.-.|+=..+ .++|+.-.-....-| .-|.... .++-++++++|.+=-. .
T Consensus 21 aFVy~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~H~-----~yptvnyHCmSMGv~~NRLfa~iEtR~ 95 (367)
T PF12217_consen 21 AFVYDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDLHP-----DYPTVNYHCMSMGVVGNRLFAVIETRT 95 (367)
T ss_dssp -EEETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS---T-----TTTTEEEE-B-EEEETTEEEEEEEEEE
T ss_pred ceeecCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhcCC-----CCCccceeeeeeeeecceeeEEEeehh
Confidence 4566777764 44432 21222233444444 468876543211111 1222333 4567789999876322 1
Q ss_pred CCCCCceeEEEEE---CCCCcEEEeeecCCCCC-------CCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcE
Q 010115 167 DSGSDRVSVWTFD---TETECWSVVEAKGDIPV-------ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTW 236 (518)
Q Consensus 167 ~~~~~~~~v~~yd---~~t~~W~~~~~~~~~p~-------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 236 (518)
-........+.|| .....|++..-. .+|. .-.-|+.+.+++.=|.+|=.+++-. -..+-.+-. ++.|
T Consensus 96 ~a~~km~~~~Lw~RpMF~~spW~~teL~-~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~s-PRe~G~~yf-s~~~ 172 (367)
T PF12217_consen 96 VASNKMVRAELWSRPMFHDSPWRITELG-TIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVS-PRELGFLYF-SDAF 172 (367)
T ss_dssp TTT--EEEEEEEEEE-STTS--EEEEEE-S-TT--------SEEEEEEE-SSS-EEEEEEE-SSS-S-EEEEEEE-TTTT
T ss_pred hhhhhhhhhhhhcccccccCCceeeecc-cccccccccceeeeeeeeeEecCCceeEEeccCCCC-cceeeEEEe-cccc
Confidence 1222233344444 567889876532 1333 3456788888888888876555422 222222111 1222
Q ss_pred --------EEeecCCCCCCCCCCcEEEEECCcEEEEEc-CCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEE
Q 010115 237 --------LPLHCTGTGPSPRSNHVAALYDDKNLLIFG-GSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL 307 (518)
Q Consensus 237 --------~~~~~~g~~p~~r~~~~~~~~~~~~lyv~G-G~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~ 307 (518)
+.++. .....-...+.-.+++. ||+.- |......-+.+.+-+.....|+.+.... ..-....--+.
T Consensus 173 ~sp~~~vrr~i~s--ey~~~AsEPCvkyY~g~-LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~--nvHhtnlPFak 247 (367)
T PF12217_consen 173 ASPGVFVRRIIPS--EYERNASEPCVKYYDGV-LYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPN--NVHHTNLPFAK 247 (367)
T ss_dssp T-TT--EEEE--G--GG-TTEEEEEEEEETTE-EEEEEEES-TTS---EEEEESSTTSS-EEEE-TT-----SS---EEE
T ss_pred cCCcceeeeechh--hhccccccchhhhhCCE-EEEEEcCcCCCCCcceeeeecccCCchhhccccc--cccccCCCcee
Confidence 12211 11222222334456676 66654 5444455567888888889999987531 11122233456
Q ss_pred ECCEEEEEcccCC----------CC---CcCeEEE-------EECCCCceEEeecC--CCCCCCCCCCceEEEEeeCCcc
Q 010115 308 CGTKWYIAGGGSR----------KK---RHAETLI-------FDILKGEWSVAITS--PSSSVTSNKGFTLVLVQHKEKD 365 (518)
Q Consensus 308 ~~~~iyv~GG~~~----------~~---~~~~v~~-------yd~~~~~W~~~~~~--~~~~~~~r~~~s~~~~~~~~~~ 365 (518)
+++.|||||-... +. ....++. +.++.-+|..+... ........-|.+.+++. +.-
T Consensus 248 vgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~K--D~~ 325 (367)
T PF12217_consen 248 VGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVK--DGW 325 (367)
T ss_dssp ETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEE--TTE
T ss_pred eCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEE--CCE
Confidence 7999999985321 11 1122222 24555667766542 11222233344455554 444
Q ss_pred EEEEEcCCC
Q 010115 366 FLVAFGGIK 374 (518)
Q Consensus 366 ~l~v~GG~~ 374 (518)
--|+|||.+
T Consensus 326 lyy~FGgED 334 (367)
T PF12217_consen 326 LYYIFGGED 334 (367)
T ss_dssp EEEEEEEB-
T ss_pred EEEEecCcc
Confidence 457799975
No 124
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=75.55 E-value=28 Score=36.84 Aligned_cols=124 Identities=13% Similarity=0.126 Sum_probs=64.7
Q ss_pred CCCCCcEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCC
Q 010115 247 SPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKR 323 (518)
Q Consensus 247 ~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~ 323 (518)
.|+++.-++... ..-||+.|- -++||++|++.+.|-..-.. -.+- .-++-+ -+.++.+||..+.
T Consensus 132 IP~~GRDm~y~~~scDly~~gs------g~evYRlNLEqGrfL~P~~~---~~~~--lN~v~in~~hgLla~Gt~~g~-- 198 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS------GSEVYRLNLEQGRFLNPFET---DSGE--LNVVSINEEHGLLACGTEDGV-- 198 (703)
T ss_pred cCcCCccccccCCCccEEEeec------CcceEEEEcccccccccccc---cccc--ceeeeecCccceEEecccCce--
Confidence 344444454432 223666552 25799999999988543221 1111 122333 3568888886654
Q ss_pred cCeEEEEECCCCceEEeecCCCC---CCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 324 HAETLIFDILKGEWSVAITSPSS---SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 324 ~~~v~~yd~~~~~W~~~~~~~~~---~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
|..+|+....-......... .|......+++++...+.+--+.+|-..+ .|++||+.+.+
T Consensus 199 ---VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G----~v~iyDLRa~~ 261 (703)
T KOG2321|consen 199 ---VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG----SVLIYDLRASK 261 (703)
T ss_pred ---EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC----cEEEEEcccCC
Confidence 88888876543222111111 12222233444444444333344554433 68999987765
No 125
>PRK03629 tolB translocation protein TolB; Provisional
Probab=74.98 E-value=1.1e+02 Score=31.85 Aligned_cols=191 Identities=8% Similarity=-0.005 Sum_probs=93.8
Q ss_pred CcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccc-eEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecC
Q 010115 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRG-HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (518)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~ 192 (518)
..++++|+.+.+-+.+... +.... ......+.+|++.....+ ..++|.+|..+.+.+.+..
T Consensus 223 ~~i~i~dl~~G~~~~l~~~------------~~~~~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~-- 284 (429)
T PRK03629 223 SALVIQTLANGAVRQVASF------------PRHNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTD-- 284 (429)
T ss_pred cEEEEEECCCCCeEEccCC------------CCCcCCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccC--
Confidence 4577777776655554431 11111 111122445665533221 2369999999988777653
Q ss_pred CCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCC
Q 010115 193 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK 272 (518)
Q Consensus 193 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~ 272 (518)
.+.. .......-+++.+++...... ...+|.+|+.+..-+.+...+ .........-+++.|++.+..++
T Consensus 285 -~~~~-~~~~~wSPDG~~I~f~s~~~g---~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g-- 353 (429)
T PRK03629 285 -GRSN-NTEPTWFPDSQNLAYTSDQAG---RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNGG-- 353 (429)
T ss_pred -CCCC-cCceEECCCCCEEEEEeCCCC---CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccCC--
Confidence 1111 111111223443333322211 247899999888777764211 11111222234553444333222
Q ss_pred CCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEee
Q 010115 273 TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (518)
Q Consensus 273 ~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 341 (518)
..+++.+|++++.++.+.... ........-+++.+++.+..+. ...++..+.+...=..+.
T Consensus 354 -~~~I~~~dl~~g~~~~Lt~~~-----~~~~p~~SpDG~~i~~~s~~~~--~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 354 -QQHIAKQDLATGGVQVLTDTF-----LDETPSIAPNGTMVIYSSSQGM--GSVLNLVSTDGRFKARLP 414 (429)
T ss_pred -CceEEEEECCCCCeEEeCCCC-----CCCCceECCCCCEEEEEEcCCC--ceEEEEEECCCCCeEECc
Confidence 246999999999988876421 1111122236666666554332 234667777655544443
No 126
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=74.86 E-value=1.8e+02 Score=34.30 Aligned_cols=219 Identities=13% Similarity=0.052 Sum_probs=110.1
Q ss_pred eEEEEE--CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCC---CCCCCC-CCCccceEEEEE--CCEEEEEc
Q 010115 92 HAAAVI--GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSP---SSLPLK-IPACRGHSLISW--GKKVLLVG 163 (518)
Q Consensus 92 ~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~---~~~~~~-~~~r~~~~~~~~--~~~iyv~G 163 (518)
+++++. ++.|||.-... +.+.++|+.++.=+.+...+.... ...... ..-..-+.++.. ++.+||..
T Consensus 627 ~GIavd~~gn~LYVaDt~n-----~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADTEN-----HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred cEEEEeCCCCEEEEEeCCC-----ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence 444444 45688865422 457888887766554432111000 000000 000111234443 57899874
Q ss_pred CcCCCCCCceeEEEEECCCCcEEEeeecCCCC----------CCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEc
Q 010115 164 GKTDSGSDRVSVWTFDTETECWSVVEAKGDIP----------VARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDL 231 (518)
Q Consensus 164 G~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p----------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~ 231 (518)
..+ +.|++||+.+.........+... ....-+.+++. ++.||+.-.. .+.+.+||+
T Consensus 702 ~~~------~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------n~~Irv~D~ 769 (1057)
T PLN02919 702 AGQ------HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------SSSIRALDL 769 (1057)
T ss_pred CCC------CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------CCeEEEEEC
Confidence 432 36999999887765544322100 00111223333 3468987433 356999999
Q ss_pred CCCcEEEeecCCC-CCC--------------CC--CCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCC
Q 010115 232 KSLTWLPLHCTGT-GPS--------------PR--SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRG 294 (518)
Q Consensus 232 ~t~~W~~~~~~g~-~p~--------------~r--~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~ 294 (518)
.+...+.+..... .+. .. .-.++++..+..+||....+ +.|.+||++++....+...|
T Consensus 770 ~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N-----~rIrviD~~tg~v~tiaG~G 844 (1057)
T PLN02919 770 KTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN-----HKIKKLDPATKRVTTLAGTG 844 (1057)
T ss_pred CCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC-----CEEEEEECCCCeEEEEeccC
Confidence 8766433221000 000 00 01133343433488876443 46999999998887776543
Q ss_pred CCC-------CCC--cceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCce
Q 010115 295 FHP-------SPR--AGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEW 337 (518)
Q Consensus 295 ~~p-------~~r--~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 337 (518)
..- ... .-+++++. ++++||....+ +.|.++|+.+.+-
T Consensus 845 ~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N-----n~Irvid~~~~~~ 892 (1057)
T PLN02919 845 KAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN-----SLIRYLDLNKGEA 892 (1057)
T ss_pred CcCCCCCcccccccCCceEEEEeCCCCEEEEECCC-----CEEEEEECCCCcc
Confidence 210 011 11223332 67899986543 3588999888653
No 127
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=74.30 E-value=1.2e+02 Score=31.93 Aligned_cols=240 Identities=15% Similarity=0.165 Sum_probs=112.3
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEE-----EECCEEEEEcCcCCCCCCce
Q 010115 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLI-----SWGKKVLLVGGKTDSGSDRV 173 (518)
Q Consensus 99 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~iyv~GG~~~~~~~~~ 173 (518)
+.=++-||.+ .+|.+||+....=+.... -.+.+...|..- +-++.|+++-|...
T Consensus 179 GaR~~sGs~D-----y~v~~wDf~gMdas~~~f----------r~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq------ 237 (641)
T KOG0772|consen 179 GARFVSGSLD-----YTVKFWDFQGMDASMRSF----------RQLQPCETHQINSLQYSVTGDQILVVSGSAQ------ 237 (641)
T ss_pred Cceeeecccc-----ceEEEEecccccccchhh----------hccCcccccccceeeecCCCCeEEEEecCcc------
Confidence 4456667655 578888887643211111 112223334332 23688888877643
Q ss_pred eEEEEECCCCcEEEeeecCCC----CCCCcceEEEEE-------CCEEEEEcccCCCCcccCcEEEEEcCC--CcEEEee
Q 010115 174 SVWTFDTETECWSVVEAKGDI----PVARSGHTVVRA-------SSVLILFGGEDGKRRKLNDLHMFDLKS--LTWLPLH 240 (518)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~~~~----p~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~~yd~~t--~~W~~~~ 240 (518)
.-.||-...+|.+.. +|+. ...-.+|.+... +...|+--+.++. +-++|... .+-+.+.
T Consensus 238 -akl~DRdG~~~~e~~-KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgt------lRiWdv~~~k~q~qVik 309 (641)
T KOG0772|consen 238 -AKLLDRDGFEIVEFS-KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGT------LRIWDVNNTKSQLQVIK 309 (641)
T ss_pred -eeEEccCCceeeeee-ccchhhhhhhccCCceeeeeccccccCcccceEEecCCCc------EEEEecCCchhheeEEe
Confidence 456777777776654 2321 112244554432 2345665555443 33344332 2222222
Q ss_pred cCCCCCCCCCCcEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecC--CCCCCCCcceEEEEE--CCEEEEE
Q 010115 241 CTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR--GFHPSPRAGCCGVLC--GTKWYIA 315 (518)
Q Consensus 241 ~~g~~p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~--~~~p~~r~~~~~~~~--~~~iyv~ 315 (518)
.. .....|...+.|.++ ++.+ |.+|+... .|..++. ..|..-+.+ .....+-..-+++.+ ++++++-
T Consensus 310 ~k-~~~g~Rv~~tsC~~nrdg~~-iAagc~DG----SIQ~W~~--~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlS 381 (641)
T KOG0772|consen 310 TK-PAGGKRVPVTSCAWNRDGKL-IAAGCLDG----SIQIWDK--GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLS 381 (641)
T ss_pred ec-cCCCcccCceeeecCCCcch-hhhcccCC----ceeeeec--CCcccccceEeeeccCCCCceeEEEeccccchhhh
Confidence 21 233456666666665 3334 66666432 3555553 334332221 001112222233333 6676666
Q ss_pred cccCCCCCcCeEEEEECCC-----CceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCC--CCCcEEEEEccc
Q 010115 316 GGGSRKKRHAETLIFDILK-----GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE--PSNQVEVLSIEK 388 (518)
Q Consensus 316 GG~~~~~~~~~v~~yd~~~-----~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~--~~~~v~~yd~~~ 388 (518)
-|.++. +-++|+.. ++|+-++.. .+... +.+. -+++|++.|-.... ....++.||..+
T Consensus 382 Rg~D~t-----LKvWDLrq~kkpL~~~tgL~t~---~~~td-----c~FS--Pd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 382 RGFDDT-----LKVWDLRQFKKPLNVRTGLPTP---FPGTD-----CCFS--PDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred ccCCCc-----eeeeeccccccchhhhcCCCcc---CCCCc-----cccC--CCceEEEecccccCCCCCceEEEEeccc
Confidence 665543 34444433 456665431 11122 2222 13567777765322 244577777655
Q ss_pred CC
Q 010115 389 NE 390 (518)
Q Consensus 389 ~~ 390 (518)
-+
T Consensus 447 ~d 448 (641)
T KOG0772|consen 447 LD 448 (641)
T ss_pred ee
Confidence 43
No 128
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=73.40 E-value=1.2e+02 Score=31.33 Aligned_cols=147 Identities=15% Similarity=0.172 Sum_probs=80.0
Q ss_pred ceeEEEEECCCC-----cEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCc---EEEeecCC
Q 010115 172 RVSVWTFDTETE-----CWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT---WLPLHCTG 243 (518)
Q Consensus 172 ~~~v~~yd~~t~-----~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~---W~~~~~~g 243 (518)
.+++|..|.... .|..+.+ +..-..+.+...++.+|+.-..+. ....+..+++.+.. |..+-
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~----~~~~~~~~v~~~~~~~yi~Tn~~a---~~~~l~~~~l~~~~~~~~~~~l--- 320 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSP----REDGVEYYVDHHGDRLYILTNDDA---PNGRLVAVDLADPSPAEWWTVL--- 320 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEE----SSSS-EEEEEEETTEEEEEE-TT----TT-EEEEEETTSTSGGGEEEEE---
T ss_pred CCeEEEEeccccCCCcCCcEEEeC----CCCceEEEEEccCCEEEEeeCCCC---CCcEEEEecccccccccceeEE---
Confidence 478999999885 7998874 222233344456899999866333 34578889988765 76432
Q ss_pred CCCCC-CCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcC-CCeEEEeecCCCCCCCCcceEEEEE----CCEEEE-Ec
Q 010115 244 TGPSP-RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFE-TMIWTRIKIRGFHPSPRAGCCGVLC----GTKWYI-AG 316 (518)
Q Consensus 244 ~~p~~-r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~-~~~W~~v~~~~~~p~~r~~~~~~~~----~~~iyv-~G 316 (518)
..+.. ..--.+...++. |++.-=. .....|.++|+. +..-..++. |. .+...... .+.+++ +.
T Consensus 321 ~~~~~~~~l~~~~~~~~~-Lvl~~~~---~~~~~l~v~~~~~~~~~~~~~~----p~--~g~v~~~~~~~~~~~~~~~~s 390 (414)
T PF02897_consen 321 IPEDEDVSLEDVSLFKDY-LVLSYRE---NGSSRLRVYDLDDGKESREIPL----PE--AGSVSGVSGDFDSDELRFSYS 390 (414)
T ss_dssp E--SSSEEEEEEEEETTE-EEEEEEE---TTEEEEEEEETT-TEEEEEEES----SS--SSEEEEEES-TT-SEEEEEEE
T ss_pred cCCCCceeEEEEEEECCE-EEEEEEE---CCccEEEEEECCCCcEEeeecC----Cc--ceEEeccCCCCCCCEEEEEEe
Confidence 11112 122233344555 5554322 224579999988 433333322 22 22211111 344444 44
Q ss_pred ccCCCCCcCeEEEEECCCCceEEee
Q 010115 317 GGSRKKRHAETLIFDILKGEWSVAI 341 (518)
Q Consensus 317 G~~~~~~~~~v~~yd~~~~~W~~~~ 341 (518)
+... -..++.||+.+++.+.+.
T Consensus 391 s~~~---P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 391 SFTT---PPTVYRYDLATGELTLLK 412 (414)
T ss_dssp ETTE---EEEEEEEETTTTCEEEEE
T ss_pred CCCC---CCEEEEEECCCCCEEEEE
Confidence 4332 356899999999887754
No 129
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=72.56 E-value=1.1e+02 Score=30.90 Aligned_cols=261 Identities=10% Similarity=0.049 Sum_probs=125.5
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCC---CCCCceeE
Q 010115 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTD---SGSDRVSV 175 (518)
Q Consensus 99 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~---~~~~~~~v 175 (518)
..+||.-.....- .+.+.++|..+.+-...-+. ..+-.+.+...+..||+.-.+.. .+...+.|
T Consensus 13 ~~v~V~d~~~~~~-~~~v~ViD~~~~~v~g~i~~------------G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V 79 (352)
T TIGR02658 13 RRVYVLDPGHFAA-TTQVYTIDGEAGRVLGMTDG------------GFLPNPVVASDGSFFAHASTVYSRIARGKRTDYV 79 (352)
T ss_pred CEEEEECCccccc-CceEEEEECCCCEEEEEEEc------------cCCCceeECCCCCEEEEEeccccccccCCCCCEE
Confidence 3467665432222 27899999988554332221 11112233344678999877422 23345679
Q ss_pred EEEECCCCcEEEeeecCCCCCCC-----cceEEEE--ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEE-eecCC---C
Q 010115 176 WTFDTETECWSVVEAKGDIPVAR-----SGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-LHCTG---T 244 (518)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~p~~r-----~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~g---~ 244 (518)
..||+.|.+-..--+. .+.|| .-+..+. .+..+|+.- . ..-+.+-+.|+.+.+-.. ++..+ -
T Consensus 80 ~v~D~~t~~~~~~i~~--p~~p~~~~~~~~~~~~ls~dgk~l~V~n-~----~p~~~V~VvD~~~~kvv~ei~vp~~~~v 152 (352)
T TIGR02658 80 EVIDPQTHLPIADIEL--PEGPRFLVGTYPWMTSLTPDNKTLLFYQ-F----SPSPAVGVVDLEGKAFVRMMDVPDCYHI 152 (352)
T ss_pred EEEECccCcEEeEEcc--CCCchhhccCccceEEECCCCCEEEEec-C----CCCCEEEEEECCCCcEEEEEeCCCCcEE
Confidence 9999999885533221 12223 1122222 345677761 1 224668888888776544 22110 0
Q ss_pred CCCCCCCcEEEEECCcEEE---------------EEcC------CCC------C-----CCCCcEEEEEcCC------Ce
Q 010115 245 GPSPRSNHVAALYDDKNLL---------------IFGG------SSK------S-----KTLNDLYSLDFET------MI 286 (518)
Q Consensus 245 ~p~~r~~~~~~~~~~~~ly---------------v~GG------~~~------~-----~~~~~v~~yd~~~------~~ 286 (518)
.|.+...+.+.+.+++.+. +|-+ ... . .+-+.++..|+.. ..
T Consensus 153 y~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~ 232 (352)
T TIGR02658 153 FPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPA 232 (352)
T ss_pred EEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecce
Confidence 1122222222233333222 2222 000 0 1125566777422 23
Q ss_pred EEEeecCCC----CCCCCcceEEEEECCEEEEEc-ccC---CCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEE
Q 010115 287 WTRIKIRGF----HPSPRAGCCGVLCGTKWYIAG-GGS---RKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVL 358 (518)
Q Consensus 287 W~~v~~~~~----~p~~r~~~~~~~~~~~iyv~G-G~~---~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~ 358 (518)
|..+..... .|......+...-++++||.. |.. .....++++++|..+.+-.... + ..+.-++++
T Consensus 233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i--~----vG~~~~~ia- 305 (352)
T TIGR02658 233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKI--E----LGHEIDSIN- 305 (352)
T ss_pred eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEE--e----CCCceeeEE-
Confidence 655543211 111111111112367899842 221 1234468999998775543322 2 122333444
Q ss_pred EeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 359 VQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 359 ~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
+...++..||+.-+. .++|.++|..+.+
T Consensus 306 vS~Dgkp~lyvtn~~----s~~VsViD~~t~k 333 (352)
T TIGR02658 306 VSQDAKPLLYALSTG----DKTLYIFDAETGK 333 (352)
T ss_pred ECCCCCeEEEEeCCC----CCcEEEEECcCCe
Confidence 333344478876654 3469999988775
No 130
>PTZ00420 coronin; Provisional
Probab=71.38 E-value=1.6e+02 Score=32.05 Aligned_cols=153 Identities=13% Similarity=0.074 Sum_probs=71.1
Q ss_pred CEEEEEcCcCCCCCCceeEEEEECCCCcEE-EeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCC
Q 010115 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWS-VVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (518)
Q Consensus 157 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 234 (518)
..+++.||.+. .+..||+.+.+=. .+. .+ ..-.++.. .++.+++.++.+. .+.+||+.+.
T Consensus 138 ~~iLaSgS~Dg------tIrIWDl~tg~~~~~i~----~~--~~V~SlswspdG~lLat~s~D~------~IrIwD~Rsg 199 (568)
T PTZ00420 138 YYIMCSSGFDS------FVNIWDIENEKRAFQIN----MP--KKLSSLKWNIKGNLLSGTCVGK------HMHIIDPRKQ 199 (568)
T ss_pred CeEEEEEeCCC------eEEEEECCCCcEEEEEe----cC--CcEEEEEECCCCCEEEEEecCC------EEEEEECCCC
Confidence 34566666543 5778888876511 111 11 11122222 3567777766442 4888999875
Q ss_pred cEEEeecCCCCCCCCCCcEEEE-----ECCcEEEEEcCCCCCCCCCcEEEEEcCC-CeEEEeecCCCCCCCCcceEEEEE
Q 010115 235 TWLPLHCTGTGPSPRSNHVAAL-----YDDKNLLIFGGSSKSKTLNDLYSLDFET-MIWTRIKIRGFHPSPRAGCCGVLC 308 (518)
Q Consensus 235 ~W~~~~~~g~~p~~r~~~~~~~-----~~~~~lyv~GG~~~~~~~~~v~~yd~~~-~~W~~v~~~~~~p~~r~~~~~~~~ 308 (518)
+=...- ..........++. -+++ .++.+|.+.. ....+..||+.+ ..-...... .. ..+.-....
T Consensus 200 ~~i~tl---~gH~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~-~~R~VkLWDlr~~~~pl~~~~l---d~-~~~~L~p~~ 270 (568)
T PTZ00420 200 EIASSF---HIHDGGKNTKNIWIDGLGGDDN-YILSTGFSKN-NMREMKLWDLKNTTSALVTMSI---DN-ASAPLIPHY 270 (568)
T ss_pred cEEEEE---ecccCCceeEEEEeeeEcCCCC-EEEEEEcCCC-CccEEEEEECCCCCCceEEEEe---cC-CccceEEee
Confidence 422110 1111110111111 1334 5666665542 123588888764 211111110 00 000001111
Q ss_pred ---CCEEEEEcccCCCCCcCeEEEEECCCCceEEee
Q 010115 309 ---GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (518)
Q Consensus 309 ---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 341 (518)
.+.+|+.|..+.. +.+|++....-..+.
T Consensus 271 D~~tg~l~lsGkGD~t-----Ir~~e~~~~~~~~l~ 301 (568)
T PTZ00420 271 DESTGLIYLIGKGDGN-----CRYYQHSLGSIRKVN 301 (568)
T ss_pred eCCCCCEEEEEECCCe-----EEEEEccCCcEEeec
Confidence 4678888765443 788887766554444
No 131
>PRK01742 tolB translocation protein TolB; Provisional
Probab=71.21 E-value=1.4e+02 Score=31.17 Aligned_cols=140 Identities=13% Similarity=0.107 Sum_probs=70.4
Q ss_pred eeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCE-EEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCC
Q 010115 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSV-LILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (518)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~ 251 (518)
..++.+|+.+++-+.+.. .+.. .......-+++ |++....++. .++|.+|+.+.....+.. ... ...
T Consensus 228 ~~i~i~dl~tg~~~~l~~---~~g~-~~~~~wSPDG~~La~~~~~~g~----~~Iy~~d~~~~~~~~lt~---~~~-~~~ 295 (429)
T PRK01742 228 SQLVVHDLRSGARKVVAS---FRGH-NGAPAFSPDGSRLAFASSKDGV----LNIYVMGANGGTPSQLTS---GAG-NNT 295 (429)
T ss_pred cEEEEEeCCCCceEEEec---CCCc-cCceeECCCCCEEEEEEecCCc----EEEEEEECCCCCeEeecc---CCC-CcC
Confidence 368999998887666543 2211 11112222444 4443322222 358999998888777642 111 111
Q ss_pred cEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEEC-CEEEEEcccCCCCCcCeEEEE
Q 010115 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCG-TKWYIAGGGSRKKRHAETLIF 330 (518)
Q Consensus 252 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~y 330 (518)
.....-+++.|++.....+ ..++|.++..+..-+.+.. .. . .....-+ ..|++.++ ..++.+
T Consensus 296 ~~~wSpDG~~i~f~s~~~g---~~~I~~~~~~~~~~~~l~~-----~~-~-~~~~SpDG~~ia~~~~-------~~i~~~ 358 (429)
T PRK01742 296 EPSWSPDGQSILFTSDRSG---SPQVYRMSASGGGASLVGG-----RG-Y-SAQISADGKTLVMING-------DNVVKQ 358 (429)
T ss_pred CEEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEecC-----CC-C-CccCCCCCCEEEEEcC-------CCEEEE
Confidence 1222234453444332222 2368888876654333311 11 1 1111124 44555443 347889
Q ss_pred ECCCCceEEee
Q 010115 331 DILKGEWSVAI 341 (518)
Q Consensus 331 d~~~~~W~~~~ 341 (518)
|+.+..+..+.
T Consensus 359 Dl~~g~~~~lt 369 (429)
T PRK01742 359 DLTSGSTEVLS 369 (429)
T ss_pred ECCCCCeEEec
Confidence 99999888764
No 132
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=71.20 E-value=1e+02 Score=31.70 Aligned_cols=190 Identities=14% Similarity=0.171 Sum_probs=91.4
Q ss_pred CCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEe
Q 010115 109 GNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVV 188 (518)
Q Consensus 109 ~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 188 (518)
.....|++|++|-+-+.--+++. +.+.. +-+++-..++.+|++-=+ .++-++..|+.+-+=-++
T Consensus 401 ~de~~N~vYilDe~lnvvGkltG----------l~~gE-RIYAvRf~gdv~yiVTfr-----qtDPlfviDlsNPenPkv 464 (603)
T COG4880 401 EDEPVNAVYILDENLNVVGKLTG----------LAPGE-RIYAVRFVGDVLYIVTFR-----QTDPLFVIDLSNPENPKV 464 (603)
T ss_pred CCCccceeEEEcCCCcEEEEEec----------cCCCc-eEEEEEEeCceEEEEEEe-----ccCceEEEEcCCCCCCce
Confidence 34568999999998887666654 22223 335666678888887322 234477777765442221
Q ss_pred eecCCCCCCCcceEEEEEC-CEEEEEcccCCCCcccCcEEEEEcCCCc----EEEeecCCC-CCCCCCCcEEEEECCcEE
Q 010115 189 EAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKSLT----WLPLHCTGT-GPSPRSNHVAALYDDKNL 262 (518)
Q Consensus 189 ~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~----W~~~~~~g~-~p~~r~~~~~~~~~~~~l 262 (518)
- |.+-.|-+..-.--++ +.+.=+|-.+++ -.+-.||...-. -.......- .|.-+..|+...-....|
T Consensus 465 l--GeLKIPGfS~YLHpigen~~lGvG~~~g~----vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~i 538 (603)
T COG4880 465 L--GELKIPGFSEYLHPIGENRLLGVGAYQGG----VKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEI 538 (603)
T ss_pred e--EEEecCCchhhccccCCCcEEEeecccCC----ceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccE
Confidence 1 1122221211112233 455555554433 235566654311 000000001 123344554433333234
Q ss_pred EEEcCCCCCCCCCcEEEEEcCCCeEEEeecC--CCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEe
Q 010115 263 LIFGGSSKSKTLNDLYSLDFETMIWTRIKIR--GFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (518)
Q Consensus 263 yv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~--~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 340 (518)
+.+--+ ..-+.|-.+.+ .++... ...+. --+..+++.+|++|| +++|.|| .+.|+.+
T Consensus 539 fFlPay------~~gyif~iedg--~kl~k~~e~k~na----~RA~fi~dylY~vg~-------~ev~~ld--enswe~V 597 (603)
T COG4880 539 FFLPAY------LGGYIFFIEDG--SKLRKRAERKLNA----DRAFFIKDYLYLVGG-------NEVWKLD--ENSWEVV 597 (603)
T ss_pred EEeccc------CccEEEEEecC--ceeeehhhhcccc----eeeEEecceEEEecc-------ceeEEec--cchHhhh
Confidence 443211 11234444333 222211 01122 234567999999999 5688887 4568776
Q ss_pred e
Q 010115 341 I 341 (518)
Q Consensus 341 ~ 341 (518)
.
T Consensus 598 g 598 (603)
T COG4880 598 G 598 (603)
T ss_pred h
Confidence 4
No 133
>PRK10115 protease 2; Provisional
Probab=70.63 E-value=1.8e+02 Score=32.45 Aligned_cols=211 Identities=8% Similarity=-0.023 Sum_probs=98.8
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECC-EEEEEcCcCCCCCCceeEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGK-KVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~ 176 (518)
+++.++++-........++++.|+.+... ++ ..++.........-++ .+|+. -.........++|
T Consensus 137 dg~~la~~~d~~G~E~~~l~v~d~~tg~~--l~-----------~~i~~~~~~~~w~~D~~~~~y~-~~~~~~~~~~~v~ 202 (686)
T PRK10115 137 DNTIMALAEDFLSRRQYGIRFRNLETGNW--YP-----------ELLDNVEPSFVWANDSWTFYYV-RKHPVTLLPYQVW 202 (686)
T ss_pred CCCEEEEEecCCCcEEEEEEEEECCCCCC--CC-----------ccccCcceEEEEeeCCCEEEEE-EecCCCCCCCEEE
Confidence 45566665433323345677777766531 11 1122222222222243 44443 3322112336899
Q ss_pred EEECCCCcE--EEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCcccCcEEEEEc--CCCcEEEeecCCCCCCCCCC
Q 010115 177 TFDTETECW--SVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDL--KSLTWLPLHCTGTGPSPRSN 251 (518)
Q Consensus 177 ~yd~~t~~W--~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~--~t~~W~~~~~~g~~p~~r~~ 251 (518)
++++.|..- ..+-.. +........... +++..++..... ..+.++.|+. .+..|..+. ..+.. ..
T Consensus 203 ~h~lgt~~~~d~lv~~e---~~~~~~~~~~~s~d~~~l~i~~~~~---~~~~~~l~~~~~~~~~~~~~~---~~~~~-~~ 272 (686)
T PRK10115 203 RHTIGTPASQDELVYEE---KDDTFYVSLHKTTSKHYVVIHLASA---TTSEVLLLDAELADAEPFVFL---PRRKD-HE 272 (686)
T ss_pred EEECCCChhHCeEEEee---CCCCEEEEEEEcCCCCEEEEEEECC---ccccEEEEECcCCCCCceEEE---ECCCC-CE
Confidence 999998842 223221 111222222223 333333443332 2367888884 234443332 11111 11
Q ss_pred cEEEEECCcEEEEEcCCCCCCCCCcEEEEEcC-CCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEE
Q 010115 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFE-TMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIF 330 (518)
Q Consensus 252 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~-~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~y 330 (518)
... ...+..+|+.--.+ .....+...++. ..+|+.+.+. ...+.--.....++.|++..-..+ ...++++
T Consensus 273 ~~~-~~~~~~ly~~tn~~--~~~~~l~~~~~~~~~~~~~l~~~---~~~~~i~~~~~~~~~l~~~~~~~g---~~~l~~~ 343 (686)
T PRK10115 273 YSL-DHYQHRFYLRSNRH--GKNFGLYRTRVRDEQQWEELIPP---RENIMLEGFTLFTDWLVVEERQRG---LTSLRQI 343 (686)
T ss_pred EEE-EeCCCEEEEEEcCC--CCCceEEEecCCCcccCeEEECC---CCCCEEEEEEEECCEEEEEEEeCC---EEEEEEE
Confidence 222 23334478775432 223457888876 6789888653 112222233445777777653322 2457888
Q ss_pred ECCCCceEEee
Q 010115 331 DILKGEWSVAI 341 (518)
Q Consensus 331 d~~~~~W~~~~ 341 (518)
|+.+.....+.
T Consensus 344 ~~~~~~~~~l~ 354 (686)
T PRK10115 344 NRKTREVIGIA 354 (686)
T ss_pred cCCCCceEEec
Confidence 87666655543
No 134
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=70.37 E-value=1.7e+02 Score=31.87 Aligned_cols=121 Identities=17% Similarity=0.143 Sum_probs=66.4
Q ss_pred CCCCCCCCcEEEE--ECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcce--EEEE--ECCEEEEEcc
Q 010115 244 TGPSPRSNHVAAL--YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC--CGVL--CGTKWYIAGG 317 (518)
Q Consensus 244 ~~p~~r~~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~--~~~~--~~~~iyv~GG 317 (518)
.+|..+...+... .++..+++.. ....+++.++.++.+-+++...- +.+.... .+++ .++.|-++++
T Consensus 423 ~~~~~~~~a~~i~ftid~~k~~~~s-----~~~~~le~~el~~ps~kel~~~~--~~~~~~~I~~l~~SsdG~yiaa~~t 495 (691)
T KOG2048|consen 423 DVPLALLDASAISFTIDKNKLFLVS-----KNIFSLEEFELETPSFKELKSIQ--SQAKCPSISRLVVSSDGNYIAAIST 495 (691)
T ss_pred cchhhhccceeeEEEecCceEEEEe-----cccceeEEEEecCcchhhhhccc--cccCCCcceeEEEcCCCCEEEEEec
Confidence 6777765554443 3333355543 22346888888877777665431 2211111 1222 3667777764
Q ss_pred cCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 010115 318 GSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (518)
Q Consensus 318 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~ 388 (518)
. ..+++||+++.+-..+.. ..+...+++.+.+.+.+.|++.= ..|+++.||++.
T Consensus 496 ~------g~I~v~nl~~~~~~~l~~------rln~~vTa~~~~~~~~~~lvvat-----s~nQv~efdi~~ 549 (691)
T KOG2048|consen 496 R------GQIFVYNLETLESHLLKV------RLNIDVTAAAFSPFVRNRLVVAT-----SNNQVFEFDIEA 549 (691)
T ss_pred c------ceEEEEEcccceeecchh------ccCcceeeeeccccccCcEEEEe-----cCCeEEEEecch
Confidence 3 349999999988877652 12233334444333445555432 245899999843
No 135
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=69.57 E-value=1.1e+02 Score=29.63 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=40.6
Q ss_pred CcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeec
Q 010115 275 NDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 342 (518)
Q Consensus 275 ~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 342 (518)
..+++||+.+..|.+-+-.+. .+|....-|--.+++++--- ..+.+.+||+.+.+.+.++.
T Consensus 254 g~l~rfdPs~~sW~eypLPgs--~arpys~rVD~~grVW~sea-----~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 254 GSLHRFDPSVTSWIEYPLPGS--KARPYSMRVDRHGRVWLSEA-----DAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred ceeeEeCcccccceeeeCCCC--CCCcceeeeccCCcEEeecc-----ccCceeecCcccceEEEecC
Confidence 468999999999998865443 23333222223567776321 23458999999999999863
No 136
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=68.94 E-value=1.3e+02 Score=29.89 Aligned_cols=117 Identities=12% Similarity=0.123 Sum_probs=68.1
Q ss_pred CEEEEEcccC-CCCc--cc-CcEEEEEcCCC-----cEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEE
Q 010115 208 SVLILFGGED-GKRR--KL-NDLHMFDLKSL-----TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLY 278 (518)
Q Consensus 208 ~~iyv~GG~~-~~~~--~~-~~~~~yd~~t~-----~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~ 278 (518)
...+++|-.- .... .. ..+..|+.... +++.+. .....-.-.+.+.+++. |++.-| +.+.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~---~~~~~g~V~ai~~~~~~-lv~~~g-------~~l~ 110 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH---STEVKGPVTAICSFNGR-LVVAVG-------NKLY 110 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE---EEEESS-EEEEEEETTE-EEEEET-------TEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE---EEeecCcceEhhhhCCE-EEEeec-------CEEE
Confidence 4566666442 1111 22 56889999884 566554 22223335567777777 555544 4688
Q ss_pred EEEcCCCe-EEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeec
Q 010115 279 SLDFETMI-WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 342 (518)
Q Consensus 279 ~yd~~~~~-W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 342 (518)
.|++.... +...... ..+-...+....++.|++-.-..+ -.++.|+.+..+-..++.
T Consensus 111 v~~l~~~~~l~~~~~~---~~~~~i~sl~~~~~~I~vgD~~~s----v~~~~~~~~~~~l~~va~ 168 (321)
T PF03178_consen 111 VYDLDNSKTLLKKAFY---DSPFYITSLSVFKNYILVGDAMKS----VSLLRYDEENNKLILVAR 168 (321)
T ss_dssp EEEEETTSSEEEEEEE----BSSSEEEEEEETTEEEEEESSSS----EEEEEEETTTE-EEEEEE
T ss_pred EEEccCcccchhhhee---cceEEEEEEeccccEEEEEEcccC----EEEEEEEccCCEEEEEEe
Confidence 99988887 8888775 333345556666886665432221 235677887777777764
No 137
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=68.94 E-value=1.3e+02 Score=30.16 Aligned_cols=116 Identities=16% Similarity=0.119 Sum_probs=60.9
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCC---CCCCcee
Q 010115 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTD---SGSDRVS 174 (518)
Q Consensus 99 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~---~~~~~~~ 174 (518)
..+||.--.... ....++++|.++++-.-.-+. ...++.+..- ++.+|+..=+-. .+..++-
T Consensus 3 ~rvyV~D~~~~~-~~~rv~viD~d~~k~lGmi~~-------------g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDv 68 (342)
T PF06433_consen 3 HRVYVQDPVFFH-MTSRVYVIDADSGKLLGMIDT-------------GFLGNVALSPDGKTIYVAETFYSRGTRGERTDV 68 (342)
T ss_dssp TEEEEEE-GGGG-SSEEEEEEETTTTEEEEEEEE-------------ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEE
T ss_pred cEEEEECCcccc-ccceEEEEECCCCcEEEEeec-------------ccCCceeECCCCCEEEEEEEEEeccccccceeE
Confidence 356665442111 235788899888764333221 1122222222 567777654322 2234556
Q ss_pred EEEEECCCCc--EEEeeecCCCCCC-Ccce-----EEEE--ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEE
Q 010115 175 VWTFDTETEC--WSVVEAKGDIPVA-RSGH-----TVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP 238 (518)
Q Consensus 175 v~~yd~~t~~--W~~~~~~~~~p~~-r~~~-----~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 238 (518)
|..||..|.+ ++.. +|.. |... .... .+..+||+- -.+..++-+.|++.++...
T Consensus 69 v~~~D~~TL~~~~EI~-----iP~k~R~~~~~~~~~~~ls~dgk~~~V~N-----~TPa~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 69 VEIWDTQTLSPTGEIE-----IPPKPRAQVVPYKNMFALSADGKFLYVQN-----FTPATSVTVVDLAAKKVVG 132 (342)
T ss_dssp EEEEETTTTEEEEEEE-----ETTS-B--BS--GGGEEE-TTSSEEEEEE-----ESSSEEEEEEETTTTEEEE
T ss_pred EEEEecCcCcccceEe-----cCCcchheecccccceEEccCCcEEEEEc-----cCCCCeEEEEECCCCceee
Confidence 8899999985 4443 3332 4321 1222 345677761 2345789999999887644
No 138
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=68.92 E-value=71 Score=31.78 Aligned_cols=225 Identities=13% Similarity=0.168 Sum_probs=109.9
Q ss_pred EEEECCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEcCcCCCCCCc
Q 010115 94 AAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDR 172 (518)
Q Consensus 94 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~ 172 (518)
+..+++...|-|-.+ +.+-++|.++-....+-. ...+..+|. ++++++|.|..+
T Consensus 202 ClQYDD~kiVSGlrD-----nTikiWD~n~~~c~~~L~--------------GHtGSVLCLqyd~rviisGSSD------ 256 (499)
T KOG0281|consen 202 CLQYDDEKIVSGLRD-----NTIKIWDKNSLECLKILT--------------GHTGSVLCLQYDERVIVSGSSD------ 256 (499)
T ss_pred EEEecchhhhccccc-----CceEEeccccHHHHHhhh--------------cCCCcEEeeeccceEEEecCCC------
Confidence 344455555555433 556677665543322211 222333443 367877776543
Q ss_pred eeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE----CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCC
Q 010115 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA----SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSP 248 (518)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~ 248 (518)
+.|-++|..|++ +.....+|+-+++ ++.+.|--.. -.++-++|+.+-+ .+...--+-.-
T Consensus 257 sTvrvWDv~tge---------~l~tlihHceaVLhlrf~ng~mvtcSk------DrsiaVWdm~sps--~it~rrVLvGH 319 (499)
T KOG0281|consen 257 STVRVWDVNTGE---------PLNTLIHHCEAVLHLRFSNGYMVTCSK------DRSIAVWDMASPT--DITLRRVLVGH 319 (499)
T ss_pred ceEEEEeccCCc---------hhhHHhhhcceeEEEEEeCCEEEEecC------CceeEEEeccCch--HHHHHHHHhhh
Confidence 257777877665 3344555665543 2222222111 1234444443322 11100011122
Q ss_pred CCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEE
Q 010115 249 RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETL 328 (518)
Q Consensus 249 r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~ 328 (518)
|+....+-+++++|+-..| . ..+-.++..+.+..+.- ..-+.+-++....++++|-|..+. .+.
T Consensus 320 rAaVNvVdfd~kyIVsASg--D----RTikvW~~st~efvRtl-----~gHkRGIAClQYr~rlvVSGSSDn-----tIR 383 (499)
T KOG0281|consen 320 RAAVNVVDFDDKYIVSASG--D----RTIKVWSTSTCEFVRTL-----NGHKRGIACLQYRDRLVVSGSSDN-----TIR 383 (499)
T ss_pred hhheeeeccccceEEEecC--C----ceEEEEeccceeeehhh-----hcccccceehhccCeEEEecCCCc-----eEE
Confidence 3333334456773222222 1 23666676666544332 223445566677999999886543 478
Q ss_pred EEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 329 IFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 329 ~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
.+|++.+..-.+....... ..++.+. ++=+|-||+++. +-++|+.+..
T Consensus 384 lwdi~~G~cLRvLeGHEeL------vRciRFd----~krIVSGaYDGk----ikvWdl~aal 431 (499)
T KOG0281|consen 384 LWDIECGACLRVLEGHEEL------VRCIRFD----NKRIVSGAYDGK----IKVWDLQAAL 431 (499)
T ss_pred EEeccccHHHHHHhchHHh------hhheeec----Cceeeeccccce----EEEEeccccc
Confidence 8888887664443211111 1233343 334678888764 5666665544
No 139
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=68.84 E-value=1.4e+02 Score=30.82 Aligned_cols=201 Identities=18% Similarity=0.198 Sum_probs=95.3
Q ss_pred cceEEEEECCEEEEEcC-cCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceE---EEE-ECCEEEEEcC
Q 010115 90 FNHAAAVIGNKMIVVGG-ESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHS---LIS-WGKKVLLVGG 164 (518)
Q Consensus 90 ~~~~~~~~~~~lyv~GG-~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~---~~~-~~~~iyv~GG 164 (518)
--++.+..+.-.|++|| .. .++|++...+..--.+ ..+...+ +.. .++..++.||
T Consensus 83 ~v~al~s~n~G~~l~ag~i~-----g~lYlWelssG~LL~v---------------~~aHYQ~ITcL~fs~dgs~iiTgs 142 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTIS-----GNLYLWELSSGILLNV---------------LSAHYQSITCLKFSDDGSHIITGS 142 (476)
T ss_pred ceeeeecCCCceEEEeeccc-----CcEEEEEeccccHHHH---------------HHhhccceeEEEEeCCCcEEEecC
Confidence 34666666777888888 43 4678877776531111 1111112 222 2678888888
Q ss_pred cCCCCCCceeEEEEECCCCcEEEeeecCC-CCCCC---cceEEEEECCEEEE-EcccCCC---CcccCcEEEEEcCCCcE
Q 010115 165 KTDSGSDRVSVWTFDTETECWSVVEAKGD-IPVAR---SGHTVVRASSVLIL-FGGEDGK---RRKLNDLHMFDLKSLTW 236 (518)
Q Consensus 165 ~~~~~~~~~~v~~yd~~t~~W~~~~~~~~-~p~~r---~~~~~~~~~~~iyv-~GG~~~~---~~~~~~~~~yd~~t~~W 236 (518)
.++ .|..|++..- +.+..+ .+.|+ ..|++.+.+ +++ +||.+.. ...-..+-+||+....-
T Consensus 143 kDg------~V~vW~l~~l----v~a~~~~~~~p~~~f~~HtlsITD--l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L 210 (476)
T KOG0646|consen 143 KDG------AVLVWLLTDL----VSADNDHSVKPLHIFSDHTLSITD--LQIGSGGTNARLYTASEDRTIKLWDLSLGVL 210 (476)
T ss_pred CCc------cEEEEEEEee----cccccCCCccceeeeccCcceeEE--EEecCCCccceEEEecCCceEEEEEecccee
Confidence 765 3444432211 010000 12222 344444432 333 4443321 01124566777766632
Q ss_pred EEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCe--------------EEEeecC-CCCCCCCc
Q 010115 237 LPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--------------WTRIKIR-GFHPSPRA 301 (518)
Q Consensus 237 ~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--------------W~~v~~~-~~~p~~r~ 301 (518)
- . ..-.|+.-+++++-.....+.+|+..+. ++..++.+-. =+++... | -..+.
T Consensus 211 L--l---ti~fp~si~av~lDpae~~~yiGt~~G~-----I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G--h~~~~ 278 (476)
T KOG0646|consen 211 L--L---TITFPSSIKAVALDPAERVVYIGTEEGK-----IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG--HENES 278 (476)
T ss_pred e--E---EEecCCcceeEEEcccccEEEecCCcce-----EEeeehhcCCcccccccccccccccceeeeecc--ccCCc
Confidence 2 1 3345566666666554445556766543 3333321100 0011110 1 01111
Q ss_pred c-eE-EEEECCEEEEEcccCCCCCcCeEEEEECCCCceEE
Q 010115 302 G-CC-GVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 339 (518)
Q Consensus 302 ~-~~-~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 339 (518)
. .+ ++-.++.+.+.|+.+++ +-++|+.+.+--+
T Consensus 279 ~ITcLais~DgtlLlSGd~dg~-----VcvWdi~S~Q~iR 313 (476)
T KOG0646|consen 279 AITCLAISTDGTLLLSGDEDGK-----VCVWDIYSKQCIR 313 (476)
T ss_pred ceeEEEEecCccEEEeeCCCCC-----EEEEecchHHHHH
Confidence 1 12 22348999999998765 7788887766544
No 140
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=66.87 E-value=1.3e+02 Score=29.26 Aligned_cols=114 Identities=15% Similarity=0.097 Sum_probs=64.5
Q ss_pred EECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE---ECCEEEEEcccCCCCcccCcEEEEE
Q 010115 154 SWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR---ASSVLILFGGEDGKRRKLNDLHMFD 230 (518)
Q Consensus 154 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~yd 230 (518)
.-++.+|+.-=. -+-+-+.|+.+..=+.++ .|.+....+-.+ --+.+++- ..-...+++||
T Consensus 197 tpdGsvwyasla------gnaiaridp~~~~aev~p----~P~~~~~gsRriwsdpig~~wit------twg~g~l~rfd 260 (353)
T COG4257 197 TPDGSVWYASLA------GNAIARIDPFAGHAEVVP----QPNALKAGSRRIWSDPIGRAWIT------TWGTGSLHRFD 260 (353)
T ss_pred CCCCcEEEEecc------ccceEEcccccCCcceec----CCCcccccccccccCccCcEEEe------ccCCceeeEeC
Confidence 347788876211 123667788887555554 343322211111 23577775 12346799999
Q ss_pred cCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEee
Q 010115 231 LKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIK 291 (518)
Q Consensus 231 ~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~ 291 (518)
+.+..|.+.+..+. .+|-. ++-+-+..++++.- --.+.+.+||+++.+.+.++
T Consensus 261 Ps~~sW~eypLPgs--~arpy-s~rVD~~grVW~se-----a~agai~rfdpeta~ftv~p 313 (353)
T COG4257 261 PSVTSWIEYPLPGS--KARPY-SMRVDRHGRVWLSE-----ADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred cccccceeeeCCCC--CCCcc-eeeeccCCcEEeec-----cccCceeecCcccceEEEec
Confidence 99999999853322 22322 23233333355421 12356999999999988874
No 141
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=66.84 E-value=1.1e+02 Score=32.03 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=56.5
Q ss_pred EEEEEcCCC----eEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCC
Q 010115 277 LYSLDFETM----IWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNK 352 (518)
Q Consensus 277 v~~yd~~~~----~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~ 352 (518)
|..||.... .|.+.- ..|-.+-+....+..|++-=|++.. ++.||+....-+.... .-.
T Consensus 189 VtlwDv~g~sp~~~~~~~H-----sAP~~gicfspsne~l~vsVG~Dkk-----i~~yD~~s~~s~~~l~-------y~~ 251 (673)
T KOG4378|consen 189 VTLWDVQGMSPIFHASEAH-----SAPCRGICFSPSNEALLVSVGYDKK-----INIYDIRSQASTDRLT-------YSH 251 (673)
T ss_pred EEEEeccCCCcccchhhhc-----cCCcCcceecCCccceEEEecccce-----EEEeecccccccceee-------ecC
Confidence 667776542 354443 2344455555568888888887754 8999988655544321 112
Q ss_pred CceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 353 GFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 353 ~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
-++.+++. +++.+++.|-..+ .+..||+....
T Consensus 252 Plstvaf~--~~G~~L~aG~s~G----~~i~YD~R~~k 283 (673)
T KOG4378|consen 252 PLSTVAFS--ECGTYLCAGNSKG----ELIAYDMRSTK 283 (673)
T ss_pred Ccceeeec--CCceEEEeecCCc----eEEEEecccCC
Confidence 24555555 5677888877655 57889987654
No 142
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=66.46 E-value=1.2e+02 Score=28.80 Aligned_cols=133 Identities=20% Similarity=0.175 Sum_probs=74.5
Q ss_pred ECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEEC-CEEEEEcccCCCCcccCcEEEEEcCC
Q 010115 155 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKS 233 (518)
Q Consensus 155 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t 233 (518)
-.+.|+..||-. .+|..|+++++.+..- .-..-+-|+++.-+ +.=++-|+.++. +-++|.++
T Consensus 125 ~enSi~~AgGD~-------~~y~~dlE~G~i~r~~----rGHtDYvH~vv~R~~~~qilsG~EDGt------vRvWd~kt 187 (325)
T KOG0649|consen 125 SENSILFAGGDG-------VIYQVDLEDGRIQREY----RGHTDYVHSVVGRNANGQILSGAEDGT------VRVWDTKT 187 (325)
T ss_pred CCCcEEEecCCe-------EEEEEEecCCEEEEEE----cCCcceeeeeeecccCcceeecCCCcc------EEEEeccc
Confidence 368899998753 5899999999987654 23344667766532 334455666543 66788888
Q ss_pred CcEEEee-cC--CCCCCCCCCc--EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE
Q 010115 234 LTWLPLH-CT--GTGPSPRSNH--VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC 308 (518)
Q Consensus 234 ~~W~~~~-~~--g~~p~~r~~~--~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~ 308 (518)
.+-.++- +. .+...|-.+- .+...+.. .+|.||-. .+-.+++...+=+.+-+. |-..+-+..+
T Consensus 188 ~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-WlvCGgGp------~lslwhLrsse~t~vfpi-----pa~v~~v~F~ 255 (325)
T KOG0649|consen 188 QKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-WLVCGGGP------KLSLWHLRSSESTCVFPI-----PARVHLVDFV 255 (325)
T ss_pred cceeEEeccccChhhcCcccCceeEEEeccCc-eEEecCCC------ceeEEeccCCCceEEEec-----ccceeEeeee
Confidence 7765542 11 1122222332 34445556 77888742 345566655554554332 2222333334
Q ss_pred CCEEEEEc
Q 010115 309 GTKWYIAG 316 (518)
Q Consensus 309 ~~~iyv~G 316 (518)
++.+.+.|
T Consensus 256 ~d~vl~~G 263 (325)
T KOG0649|consen 256 DDCVLIGG 263 (325)
T ss_pred cceEEEec
Confidence 55555555
No 143
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=66.29 E-value=1.4e+02 Score=29.37 Aligned_cols=160 Identities=13% Similarity=0.163 Sum_probs=86.9
Q ss_pred cceEEEEECCEEEEEcCcCC-----------------CCCCCcEEEEEcCCCc----EEEcccccccCCCCCCCCCCCcc
Q 010115 90 FNHAAAVIGNKMIVVGGESG-----------------NGLLDDVQVLNFDRFS----WTAASSKLYLSPSSLPLKIPACR 148 (518)
Q Consensus 90 ~~~~~~~~~~~lyv~GG~~~-----------------~~~~~~v~~yd~~~~~----W~~~~~~~~~~~~~~~~~~~~r~ 148 (518)
...++..+++.|| |||+-. .+..+.|+.||..+++ |++--.. +..
T Consensus 38 TYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~-------------~~~ 103 (339)
T PF09910_consen 38 TYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHD-------------KTK 103 (339)
T ss_pred cceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCC-------------ccc
Confidence 4456666777666 566311 1245678999988874 6554321 111
Q ss_pred ceEEE---E---ECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcc
Q 010115 149 GHSLI---S---WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRK 222 (518)
Q Consensus 149 ~~~~~---~---~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 222 (518)
-.+=+ . ++++||+.-+-. ...--||..|..++.-+.+.. -|.. -.+.+.+..+|-+ +.-..-
T Consensus 104 WaGEVSdIlYdP~~D~LLlAR~DG---h~nLGvy~ldr~~g~~~~L~~---~ps~---KG~~~~D~a~F~i---~~~~~g 171 (339)
T PF09910_consen 104 WAGEVSDILYDPYEDRLLLARADG---HANLGVYSLDRRTGKAEKLSS---NPSL---KGTLVHDYACFGI---NNFHKG 171 (339)
T ss_pred cccchhheeeCCCcCEEEEEecCC---cceeeeEEEcccCCceeeccC---CCCc---CceEeeeeEEEec---cccccC
Confidence 11111 1 257888764432 222358999999998888764 3333 2233334333322 322234
Q ss_pred cCcEEEEEcCCCcE--EEeecC----CCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcC
Q 010115 223 LNDLHMFDLKSLTW--LPLHCT----GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFE 283 (518)
Q Consensus 223 ~~~~~~yd~~t~~W--~~~~~~----g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~ 283 (518)
.+.+.+||+.+++| +..+.. |.....|..-.++...++.+..++| -+.+.||.
T Consensus 172 ~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rG--------Gi~vgnP~ 230 (339)
T PF09910_consen 172 VSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRG--------GIFVGNPY 230 (339)
T ss_pred CceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEEec--------cEEEeCCC
Confidence 67899999999999 443221 1122233334455666663444444 26666665
No 144
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=64.90 E-value=2.9e+02 Score=32.66 Aligned_cols=259 Identities=11% Similarity=0.028 Sum_probs=127.7
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCC-CccceEEEEE--CCEEEEEcCcCCCCCCcee
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIP-ACRGHSLISW--GKKVLLVGGKTDSGSDRVS 174 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 174 (518)
++.|||.-= ..+.+.++|+....=..+...........+.... -..-+.+++. ++.|||.-..+ ..
T Consensus 579 ~g~lyVaDs-----~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n------~~ 647 (1057)
T PLN02919 579 NNRLFISDS-----NHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN------HA 647 (1057)
T ss_pred CCeEEEEEC-----CCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC------ce
Confidence 577888642 1357889998765432332211100000000000 0112455554 46789874432 35
Q ss_pred EEEEECCCCcEEEeeecCCCC------------CCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEee
Q 010115 175 VWTFDTETECWSVVEAKGDIP------------VARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLH 240 (518)
Q Consensus 175 v~~yd~~t~~W~~~~~~~~~p------------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 240 (518)
+.++|+.++.-+.+...+... .-..-+.+++. ++.+||.... .+.+++||+.+.....+.
T Consensus 648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~------~~~I~v~d~~~g~v~~~~ 721 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG------QHQIWEYNISDGVTRVFS 721 (1057)
T ss_pred EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC------CCeEEEEECCCCeEEEEe
Confidence 888999887766654322100 00111234443 5788887432 245899998877665443
Q ss_pred cCCCC-------CC---CCCCcEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCC--CC---------
Q 010115 241 CTGTG-------PS---PRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFH--PS--------- 298 (518)
Q Consensus 241 ~~g~~-------p~---~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~--p~--------- 298 (518)
..|.. +. ...-..+++.. ++.|||....+ +.|.+||++++....+.. +.. +.
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n-----~~Irv~D~~tg~~~~~~g-g~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES-----SSIRALDLKTGGSRLLAG-GDPTFSDNLFKFGDHD 795 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC-----CeEEEEECCCCcEEEEEe-cccccCcccccccCCC
Confidence 22111 00 01111233333 34588875433 569999998765433221 000 00
Q ss_pred -----CCc--ceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCC------CCCCC-CCceEEEEeeCC
Q 010115 299 -----PRA--GCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS------SVTSN-KGFTLVLVQHKE 363 (518)
Q Consensus 299 -----~r~--~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~------~~~~r-~~~s~~~~~~~~ 363 (518)
... -.++++. ++.|||....+ ..|.+||+.++....+...... ..... ..-..+++..
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N-----~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-- 868 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYN-----HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-- 868 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCC-----CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC--
Confidence 001 1122332 57899986543 4599999999888766532110 00000 0112233332
Q ss_pred ccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 364 KDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 364 ~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
++.|||.-..+ +.|.++|+.+.+
T Consensus 869 dG~lyVaDt~N----n~Irvid~~~~~ 891 (1057)
T PLN02919 869 NGRLFVADTNN----SLIRYLDLNKGE 891 (1057)
T ss_pred CCCEEEEECCC----CEEEEEECCCCc
Confidence 23577765433 468888887765
No 145
>PTZ00420 coronin; Provisional
Probab=64.62 E-value=2.2e+02 Score=31.04 Aligned_cols=149 Identities=11% Similarity=0.107 Sum_probs=68.6
Q ss_pred EEEEEcccCCCCcccCcEEEEEcCCCcEE-EeecCCCCCCCCCCcEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCe
Q 010115 209 VLILFGGEDGKRRKLNDLHMFDLKSLTWL-PLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (518)
Q Consensus 209 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~-~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (518)
.+++.||.+. .+.+||+.+.+=. .+. .+ ..-.++... ++. +++.++.++ .+..||+.+.+
T Consensus 139 ~iLaSgS~Dg------tIrIWDl~tg~~~~~i~----~~--~~V~SlswspdG~-lLat~s~D~-----~IrIwD~Rsg~ 200 (568)
T PTZ00420 139 YIMCSSGFDS------FVNIWDIENEKRAFQIN----MP--KKLSSLKWNIKGN-LLSGTCVGK-----HMHIIDPRKQE 200 (568)
T ss_pred eEEEEEeCCC------eEEEEECCCCcEEEEEe----cC--CcEEEEEECCCCC-EEEEEecCC-----EEEEEECCCCc
Confidence 4556666553 4778888766421 111 11 112233333 345 666665443 48999987753
Q ss_pred EEEeecCCCCCCCCcceEEEE-----ECCEEEEEcccCCCCCcCeEEEEECCC-CceEEeecCCCCCCCCCCCceEEEEe
Q 010115 287 WTRIKIRGFHPSPRAGCCGVL-----CGTKWYIAGGGSRKKRHAETLIFDILK-GEWSVAITSPSSSVTSNKGFTLVLVQ 360 (518)
Q Consensus 287 W~~v~~~~~~p~~r~~~~~~~-----~~~~iyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~~~~~r~~~s~~~~~ 360 (518)
.+.........+. ..++. -++..++.+|.+.. ....+.+||+.+ ..-....... ...-.+....
T Consensus 201 --~i~tl~gH~g~~~-s~~v~~~~fs~d~~~IlTtG~d~~-~~R~VkLWDlr~~~~pl~~~~ld------~~~~~L~p~~ 270 (568)
T PTZ00420 201 --IASSFHIHDGGKN-TKNIWIDGLGGDDNYILSTGFSKN-NMREMKLWDLKNTTSALVTMSID------NASAPLIPHY 270 (568)
T ss_pred --EEEEEecccCCce-eEEEEeeeEcCCCCEEEEEEcCCC-CccEEEEEECCCCCCceEEEEec------CCccceEEee
Confidence 2222110111111 11111 24456666665542 223588888764 2211111000 0111233344
Q ss_pred eCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 010115 361 HKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (518)
Q Consensus 361 ~~~~~~l~v~GG~~~~~~~~v~~yd~~~~ 389 (518)
+.+.+.+|+.|..++ .+.+|++...
T Consensus 271 D~~tg~l~lsGkGD~----tIr~~e~~~~ 295 (568)
T PTZ00420 271 DESTGLIYLIGKGDG----NCRYYQHSLG 295 (568)
T ss_pred eCCCCCEEEEEECCC----eEEEEEccCC
Confidence 444566777774432 4666666543
No 146
>smart00284 OLF Olfactomedin-like domains.
Probab=64.15 E-value=1.4e+02 Score=28.71 Aligned_cols=153 Identities=14% Similarity=0.056 Sum_probs=79.2
Q ss_pred ccceEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCc---------ce---EEEEECCEEEEEc
Q 010115 147 CRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARS---------GH---TVVRASSVLILFG 214 (518)
Q Consensus 147 r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~---------~~---~~~~~~~~iyv~G 214 (518)
-.+.+.++.++.+|.--.. ...+.+||+.+++-..... +|.+.+ ++ -.++.++-|+++=
T Consensus 74 ~~GtG~VVYngslYY~~~~------s~~iiKydL~t~~v~~~~~---Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIY 144 (255)
T smart00284 74 GQGTGVVVYNGSLYFNKFN------SHDICRFDLTTETYQKEPL---LNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIY 144 (255)
T ss_pred cccccEEEECceEEEEecC------CccEEEEECCCCcEEEEEe---cCccccccccccccCCCccEEEEEcCCceEEEE
Confidence 3567788999999985332 3479999999998654332 343221 11 1344455666663
Q ss_pred ccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCC
Q 010115 215 GEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRG 294 (518)
Q Consensus 215 G~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~ 294 (518)
....+.. .-.+-+.|+.+..-++.=.+ ..+.+.++ .+-++.+. ||+.-... .....-.+.||..+++=..+...
T Consensus 145 at~~~~g-~ivvSkLnp~tL~ve~tW~T-~~~k~sa~-naFmvCGv-LY~~~s~~-~~~~~I~yayDt~t~~~~~~~i~- 218 (255)
T smart00284 145 ATEQNAG-KIVISKLNPATLTIENTWIT-TYNKRSAS-NAFMICGI-LYVTRSLG-SKGEKVFYAYDTNTGKEGHLDIP- 218 (255)
T ss_pred eccCCCC-CEEEEeeCcccceEEEEEEc-CCCccccc-ccEEEeeE-EEEEccCC-CCCcEEEEEEECCCCccceeeee-
Confidence 3222111 12244677766543332111 23333333 34456667 88885321 11122368999987653333221
Q ss_pred CCCCCCcceEEEEE---CCEEEEE
Q 010115 295 FHPSPRAGCCGVLC---GTKWYIA 315 (518)
Q Consensus 295 ~~p~~r~~~~~~~~---~~~iyv~ 315 (518)
.+.+-..++++-. +.+||+.
T Consensus 219 -f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 219 -FENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred -eccccccceeceeCCCCCeEEEE
Confidence 1222223344433 5678887
No 147
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=63.28 E-value=2e+02 Score=30.78 Aligned_cols=74 Identities=18% Similarity=0.133 Sum_probs=43.0
Q ss_pred CCCCcceEEEEE--CCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEEC--CcEEEEEcCCCC
Q 010115 195 PVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD--DKNLLIFGGSSK 270 (518)
Q Consensus 195 p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~--~~~lyv~GG~~~ 270 (518)
-.|+.+.-++.. .-.||+.|- -.++|++|++...|-..- ..-.+-.. ++.++ .+ |+.+||.++
T Consensus 131 RIP~~GRDm~y~~~scDly~~gs-------g~evYRlNLEqGrfL~P~---~~~~~~lN--~v~in~~hg-Lla~Gt~~g 197 (703)
T KOG2321|consen 131 RIPKFGRDMKYHKPSCDLYLVGS-------GSEVYRLNLEQGRFLNPF---ETDSGELN--VVSINEEHG-LLACGTEDG 197 (703)
T ss_pred ecCcCCccccccCCCccEEEeec-------CcceEEEEcccccccccc---ccccccce--eeeecCccc-eEEecccCc
Confidence 345555555553 235666542 257999999999996542 11111112 22232 34 888998655
Q ss_pred CCCCCcEEEEEcCCCe
Q 010115 271 SKTLNDLYSLDFETMI 286 (518)
Q Consensus 271 ~~~~~~v~~yd~~~~~ 286 (518)
.|..+|+.+..
T Consensus 198 -----~VEfwDpR~ks 208 (703)
T KOG2321|consen 198 -----VVEFWDPRDKS 208 (703)
T ss_pred -----eEEEecchhhh
Confidence 48888886543
No 148
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=61.43 E-value=1.5e+02 Score=28.26 Aligned_cols=191 Identities=20% Similarity=0.242 Sum_probs=95.9
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE--ECCEEEEEcccCCCCcccCcEEEEEcCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKS 233 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t 233 (518)
+++.+..+|.. .|-.||+.++.=..+.. .-..+..-+++. .+++-..-||.++. +-++|+.+
T Consensus 51 dk~~LAaa~~q-------hvRlyD~~S~np~Pv~t---~e~h~kNVtaVgF~~dgrWMyTgseDgt------~kIWdlR~ 114 (311)
T KOG0315|consen 51 DKKDLAAAGNQ-------HVRLYDLNSNNPNPVAT---FEGHTKNVTAVGFQCDGRWMYTGSEDGT------VKIWDLRS 114 (311)
T ss_pred CcchhhhccCC-------eeEEEEccCCCCCceeE---EeccCCceEEEEEeecCeEEEecCCCce------EEEEeccC
Confidence 44555555552 58889988876333222 122223333332 46777777777654 55667665
Q ss_pred CcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCc-ceEEEEE-CCE
Q 010115 234 LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRA-GCCGVLC-GTK 311 (518)
Q Consensus 234 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~-~~~~~~~-~~~ 311 (518)
..-.+.- ..+.| --+.+.+.++.=+|.|-.+ ..|+++|+.++.-..... |..-. --++.+. +++
T Consensus 115 ~~~qR~~---~~~sp--Vn~vvlhpnQteLis~dqs-----g~irvWDl~~~~c~~~li----Pe~~~~i~sl~v~~dgs 180 (311)
T KOG0315|consen 115 LSCQRNY---QHNSP--VNTVVLHPNQTELISGDQS-----GNIRVWDLGENSCTHELI----PEDDTSIQSLTVMPDGS 180 (311)
T ss_pred cccchhc---cCCCC--cceEEecCCcceEEeecCC-----CcEEEEEccCCccccccC----CCCCcceeeEEEcCCCc
Confidence 3333322 22222 1234455555344555433 359999998886655432 22211 2233333 555
Q ss_pred EEEEcccCCCCCcCeEEEEECCCCce-EEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 010115 312 WYIAGGGSRKKRHAETLIFDILKGEW-SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (518)
Q Consensus 312 iyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~ 388 (518)
+.+. +.+. ...|++++.+..- +.+. |.....++.+|..-.+..++..+| +.-+.+. .+.+++.++
T Consensus 181 ml~a-~nnk----G~cyvW~l~~~~~~s~l~--P~~k~~ah~~~il~C~lSPd~k~l-at~ssdk----tv~iwn~~~ 246 (311)
T KOG0315|consen 181 MLAA-ANNK----GNCYVWRLLNHQTASELE--PVHKFQAHNGHILRCLLSPDVKYL-ATCSSDK----TVKIWNTDD 246 (311)
T ss_pred EEEE-ecCC----ccEEEEEccCCCccccce--EhhheecccceEEEEEECCCCcEE-EeecCCc----eEEEEecCC
Confidence 5444 3332 2367777665332 2222 333346677777777766554444 4444433 445555443
No 149
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=61.08 E-value=1.8e+02 Score=28.89 Aligned_cols=176 Identities=14% Similarity=0.058 Sum_probs=89.8
Q ss_pred EEEEECCCCc-EEEeeec-CCCCCCCcceEEEEECCEEEEEccc-----CCCCcccCcEEEEEcCCCcEEEeecCCCCCC
Q 010115 175 VWTFDTETEC-WSVVEAK-GDIPVARSGHTVVRASSVLILFGGE-----DGKRRKLNDLHMFDLKSLTWLPLHCTGTGPS 247 (518)
Q Consensus 175 v~~yd~~t~~-W~~~~~~-~~~p~~r~~~~~~~~~~~iyv~GG~-----~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~ 247 (518)
++.+++++.. |+.+... ...+..|.+=..+.-.+.+|+---. ....+....+|++|+ ....+++.. -..
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~---~~~ 162 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD---DDL 162 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec---CcE
Confidence 5667765444 3555432 2355566665555556777764222 111234567999998 455655531 112
Q ss_pred CCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC------Ce--EEEeecCCCCCCCCcceEEEEECCEEEEEcccC
Q 010115 248 PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET------MI--WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGS 319 (518)
Q Consensus 248 ~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~------~~--W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 319 (518)
...+.-+..-+++.+|+.- ...+.+++|+... +. +..... ...+..-.++--++.+|+.....
T Consensus 163 ~~~NGla~SpDg~tly~aD-----T~~~~i~r~~~d~~~g~~~~~~~~~~~~~----~~G~PDG~~vDadG~lw~~a~~~ 233 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVAD-----TPANRIHRYDLDPATGPIGGRRGFVDFDE----EPGLPDGMAVDADGNLWVAAVWG 233 (307)
T ss_pred EecCceEECCCCCEEEEEe-----CCCCeEEEEecCcccCccCCcceEEEccC----CCCCCCceEEeCCCCEEEecccC
Confidence 2222223333455677762 3456789987753 11 111110 11222223333478888644332
Q ss_pred CCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCC
Q 010115 320 RKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 374 (518)
Q Consensus 320 ~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~ 374 (518)
+ ..+.+|+++...-..+.. | ....++.++...+.+.|||..-..
T Consensus 234 g----~~v~~~~pdG~l~~~i~l-P------~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 234 G----GRVVRFNPDGKLLGEIKL-P------VKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred C----ceEEEECCCCcEEEEEEC-C------CCCCccceEeCCCcCEEEEEecCC
Confidence 2 358999999555555432 2 123344555544446677766554
No 150
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=60.12 E-value=1.6e+02 Score=28.03 Aligned_cols=137 Identities=13% Similarity=0.199 Sum_probs=74.3
Q ss_pred CcEEEeeec--CCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECC
Q 010115 183 ECWSVVEAK--GDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 259 (518)
Q Consensus 183 ~~W~~~~~~--~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~ 259 (518)
..|+...|. +..+.|-.+..... -.+.|+..||- ..++..|+++.+.+..- --..-+-|+.+.-+.
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~----rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-------GVIYQVDLEDGRIQREY----RGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCCCcEEEecCC-------eEEEEEEecCCEEEEEE----cCCcceeeeeeeccc
Confidence 347766552 22445555544333 46788888863 34889999999988763 223445566554222
Q ss_pred cEEEEEcCCCCCCCCCcEEEEEcCCCeEEEe-ecCC--CCCCCCcce--EEEEECCEEEEEcccCCCCCcCeEEEEECCC
Q 010115 260 KNLLIFGGSSKSKTLNDLYSLDFETMIWTRI-KIRG--FHPSPRAGC--CGVLCGTKWYIAGGGSRKKRHAETLIFDILK 334 (518)
Q Consensus 260 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v-~~~~--~~p~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 334 (518)
.-=++.|+.++. +-.+|.++.+=.++ .+.- ..-.|..+- .+...+....|+||.-. +-.+++.+
T Consensus 168 ~~qilsG~EDGt-----vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~------lslwhLrs 236 (325)
T KOG0649|consen 168 NGQILSGAEDGT-----VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPK------LSLWHLRS 236 (325)
T ss_pred CcceeecCCCcc-----EEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCc------eeEEeccC
Confidence 213456666553 66778776654333 2211 111122222 45556778888887532 34555555
Q ss_pred CceEEee
Q 010115 335 GEWSVAI 341 (518)
Q Consensus 335 ~~W~~~~ 341 (518)
.+-+.+-
T Consensus 237 se~t~vf 243 (325)
T KOG0649|consen 237 SESTCVF 243 (325)
T ss_pred CCceEEE
Confidence 5554443
No 151
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=57.41 E-value=1.8e+02 Score=27.65 Aligned_cols=110 Identities=15% Similarity=0.198 Sum_probs=66.6
Q ss_pred ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCc-EEEEEcCCCCCCCCCcEEEEEcCC
Q 010115 206 ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDK-NLLIFGGSSKSKTLNDLYSLDFET 284 (518)
Q Consensus 206 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~~ 284 (518)
.++.-+..||-+. .++.+|.++.+-..-- .... ..--++.+|+. .+++-|+++. .+-.+|-..
T Consensus 69 ~Dnskf~s~GgDk------~v~vwDV~TGkv~Rr~---rgH~--aqVNtV~fNeesSVv~SgsfD~-----s~r~wDCRS 132 (307)
T KOG0316|consen 69 SDNSKFASCGGDK------AVQVWDVNTGKVDRRF---RGHL--AQVNTVRFNEESSVVASGSFDS-----SVRLWDCRS 132 (307)
T ss_pred ccccccccCCCCc------eEEEEEcccCeeeeec---cccc--ceeeEEEecCcceEEEeccccc-----eeEEEEccc
Confidence 3455555555443 3788999886532210 0000 01123445543 4666666554 478888888
Q ss_pred CeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEE
Q 010115 285 MIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 339 (518)
Q Consensus 285 ~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 339 (518)
+..+.+... ...+.+-..+.+.+..+|.|-.++. +..||+..++-..
T Consensus 133 ~s~ePiQil---dea~D~V~Si~v~~heIvaGS~DGt-----vRtydiR~G~l~s 179 (307)
T KOG0316|consen 133 RSFEPIQIL---DEAKDGVSSIDVAEHEIVAGSVDGT-----VRTYDIRKGTLSS 179 (307)
T ss_pred CCCCccchh---hhhcCceeEEEecccEEEeeccCCc-----EEEEEeecceeeh
Confidence 777766655 5567777888888888887766554 7889987766543
No 152
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=55.30 E-value=2.7e+02 Score=29.10 Aligned_cols=149 Identities=15% Similarity=0.112 Sum_probs=74.9
Q ss_pred eEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcE
Q 010115 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (518)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~ 253 (518)
.++.+|+.+..=..+.. .+..-..+...-.+.+|.+..=.++ ..++|.+|+.+.+-.++. .. .....+-
T Consensus 219 ~i~~~~l~~g~~~~i~~---~~g~~~~P~fspDG~~l~f~~~rdg----~~~iy~~dl~~~~~~~Lt---~~-~gi~~~P 287 (425)
T COG0823 219 RIYYLDLNTGKRPVILN---FNGNNGAPAFSPDGSKLAFSSSRDG----SPDIYLMDLDGKNLPRLT---NG-FGINTSP 287 (425)
T ss_pred eEEEEeccCCccceeec---cCCccCCccCCCCCCEEEEEECCCC----CccEEEEcCCCCcceecc---cC-CccccCc
Confidence 46677777666444432 1111111111222334444333332 367999999887744442 11 1222233
Q ss_pred EEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECC
Q 010115 254 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 333 (518)
Q Consensus 254 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 333 (518)
.-.-+++.|+..-...+. .+|+++|++...=+++...+ ....+....-+++.+++-+..... -++..+|+.
T Consensus 288 s~spdG~~ivf~Sdr~G~---p~I~~~~~~g~~~~riT~~~----~~~~~p~~SpdG~~i~~~~~~~g~--~~i~~~~~~ 358 (425)
T COG0823 288 SWSPDGSKIVFTSDRGGR---PQIYLYDLEGSQVTRLTFSG----GGNSNPVWSPDGDKIVFESSSGGQ--WDIDKNDLA 358 (425)
T ss_pred cCCCCCCEEEEEeCCCCC---cceEEECCCCCceeEeeccC----CCCcCccCCCCCCEEEEEeccCCc--eeeEEeccC
Confidence 333455544444333332 38999999988777776542 111122222244444443333221 568889988
Q ss_pred CCc-eEEeec
Q 010115 334 KGE-WSVAIT 342 (518)
Q Consensus 334 ~~~-W~~~~~ 342 (518)
++. |+.+..
T Consensus 359 ~~~~~~~lt~ 368 (425)
T COG0823 359 SGGKIRILTS 368 (425)
T ss_pred CCCcEEEccc
Confidence 777 888764
No 153
>PRK01742 tolB translocation protein TolB; Provisional
Probab=54.43 E-value=2.7e+02 Score=28.91 Aligned_cols=119 Identities=7% Similarity=-0.010 Sum_probs=59.6
Q ss_pred eeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECC-EEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCC
Q 010115 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (518)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~ 251 (518)
.++|.+|+.+...+.+.. -.. ........-++ .|+.....++ ...+|.+|.....-+.+.. . . +
T Consensus 272 ~~Iy~~d~~~~~~~~lt~---~~~-~~~~~~wSpDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~--~---~-~- 336 (429)
T PRK01742 272 LNIYVMGANGGTPSQLTS---GAG-NNTEPSWSPDGQSILFTSDRSG----SPQVYRMSASGGGASLVGG--R---G-Y- 336 (429)
T ss_pred EEEEEEECCCCCeEeecc---CCC-CcCCEEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEecC--C---C-C-
Confidence 369999998888776653 111 11111222334 4544433222 2467888876554433321 1 1 1
Q ss_pred cEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEccc
Q 010115 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGG 318 (518)
Q Consensus 252 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 318 (518)
.....-+++.|++.++ +.++.+|+.+..++.+.... ........-++++++++..
T Consensus 337 ~~~~SpDG~~ia~~~~-------~~i~~~Dl~~g~~~~lt~~~-----~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 337 SAQISADGKTLVMING-------DNVVKQDLTSGSTEVLSSTF-----LDESPSISPNGIMIIYSST 391 (429)
T ss_pred CccCCCCCCEEEEEcC-------CCEEEEECCCCCeEEecCCC-----CCCCceECCCCCEEEEEEc
Confidence 1122234554544433 35888999999888764321 1111122236666666654
No 154
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=51.75 E-value=2.7e+02 Score=28.09 Aligned_cols=147 Identities=12% Similarity=0.197 Sum_probs=78.0
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEc--CC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL--KS 233 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~--~t 233 (518)
++.+.+.||-++ ..+.++..++.|--.-+ --.--.-.++..+++.+++-|+.++. +.++.. ..
T Consensus 75 ~~~l~aTGGgDD------~AflW~~~~ge~~~elt---gHKDSVt~~~FshdgtlLATGdmsG~------v~v~~~stg~ 139 (399)
T KOG0296|consen 75 NNNLVATGGGDD------LAFLWDISTGEFAGELT---GHKDSVTCCSFSHDGTLLATGDMSGK------VLVFKVSTGG 139 (399)
T ss_pred CCceEEecCCCc------eEEEEEccCCcceeEec---CCCCceEEEEEccCceEEEecCCCcc------EEEEEcccCc
Confidence 678888888754 46778888888643321 01111122334467888888887765 334443 34
Q ss_pred CcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEE
Q 010115 234 LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWY 313 (518)
Q Consensus 234 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iy 313 (518)
.+|........+-- +.-+....++++|-.++ .+|.|.+.+..-.++-. | +..++..+-..-++|-.
T Consensus 140 ~~~~~~~e~~dieW------l~WHp~a~illAG~~DG-----svWmw~ip~~~~~kv~~-G--h~~~ct~G~f~pdGKr~ 205 (399)
T KOG0296|consen 140 EQWKLDQEVEDIEW------LKWHPRAHILLAGSTDG-----SVWMWQIPSQALCKVMS-G--HNSPCTCGEFIPDGKRI 205 (399)
T ss_pred eEEEeecccCceEE------EEecccccEEEeecCCC-----cEEEEECCCcceeeEec-C--CCCCcccccccCCCceE
Confidence 45655421111111 11222233666665544 49999987753333322 1 33344334334456666
Q ss_pred EEcccCCCCCcCeEEEEECCCCc
Q 010115 314 IAGGGSRKKRHAETLIFDILKGE 336 (518)
Q Consensus 314 v~GG~~~~~~~~~v~~yd~~~~~ 336 (518)
+.|-.+ ..+.++|+.+..
T Consensus 206 ~tgy~d-----gti~~Wn~ktg~ 223 (399)
T KOG0296|consen 206 LTGYDD-----GTIIVWNPKTGQ 223 (399)
T ss_pred EEEecC-----ceEEEEecCCCc
Confidence 555332 337888888764
No 155
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=50.93 E-value=2.9e+02 Score=28.19 Aligned_cols=247 Identities=16% Similarity=0.129 Sum_probs=113.4
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEE-EcccccccCCCCCCCCCCCccceEEE-EECCEEEEEcCcCCCCCCceeE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWT-AASSKLYLSPSSLPLKIPACRGHSLI-SWGKKVLLVGGKTDSGSDRVSV 175 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v 175 (518)
+..+|+.+. + ..+.++|+.+.+=. ++.. .....+++ .-+++..+.+.+.. +.+
T Consensus 48 gr~~yv~~r-d-----g~vsviD~~~~~~v~~i~~--------------G~~~~~i~~s~DG~~~~v~n~~~-----~~v 102 (369)
T PF02239_consen 48 GRYLYVANR-D-----GTVSVIDLATGKVVATIKV--------------GGNPRGIAVSPDGKYVYVANYEP-----GTV 102 (369)
T ss_dssp SSEEEEEET-T-----SEEEEEETTSSSEEEEEE---------------SSEEEEEEE--TTTEEEEEEEET-----TEE
T ss_pred CCEEEEEcC-C-----CeEEEEECCcccEEEEEec--------------CCCcceEEEcCCCCEEEEEecCC-----Cce
Confidence 457999863 2 36889999987632 2222 11122232 23444333333322 368
Q ss_pred EEEECCCCcEEEeeecCCC----CCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCC
Q 010115 176 WTFDTETECWSVVEAKGDI----PVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (518)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~----p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~ 251 (518)
..+|.++.+=.+.-+.+.+ +.+|...-.....+..|++--. -...+|..|....+=.... .....+.-
T Consensus 103 ~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk-----d~~~I~vVdy~d~~~~~~~---~i~~g~~~ 174 (369)
T PF02239_consen 103 SVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK-----DTGEIWVVDYSDPKNLKVT---TIKVGRFP 174 (369)
T ss_dssp EEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET-----TTTEEEEEETTTSSCEEEE---EEE--TTE
T ss_pred eEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc-----cCCeEEEEEecccccccee---eecccccc
Confidence 8899988764433222212 3344433333334555555322 2456888887654211222 23345556
Q ss_pred cEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEEEE
Q 010115 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIF 330 (518)
Q Consensus 252 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~y 330 (518)
|-...-.++..++.+ ... .+.+-..|.++++=..+-..+..|.+.......-. .+-++..+|..... -...--
T Consensus 175 ~D~~~dpdgry~~va-~~~---sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~--~~~ig~ 248 (369)
T PF02239_consen 175 HDGGFDPDGRYFLVA-ANG---SNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFA--IPLIGT 248 (369)
T ss_dssp EEEEE-TTSSEEEEE-EGG---GTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSE--EEEEE-
T ss_pred cccccCcccceeeec-ccc---cceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecccccee--cccccC
Confidence 666555554333333 322 34788999988765555444444444333333322 23455555543211 011222
Q ss_pred EC----CCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 010115 331 DI----LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (518)
Q Consensus 331 d~----~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~yd~~~~~ 390 (518)
|+ ....|+.+...+. ...+ +....+++..++++-==.+ ...+.+.++|.++.+
T Consensus 249 ~~v~v~d~~~wkvv~~I~~----~G~g--lFi~thP~s~~vwvd~~~~-~~~~~v~viD~~tl~ 305 (369)
T PF02239_consen 249 DPVSVHDDYAWKVVKTIPT----QGGG--LFIKTHPDSRYVWVDTFLN-PDADTVQVIDKKTLK 305 (369)
T ss_dssp -TTT-STTTBTSEEEEEE-----SSSS----EE--TT-SEEEEE-TT--SSHT-EEEEECCGTE
T ss_pred CccccchhhcCeEEEEEEC----CCCc--ceeecCCCCccEEeeccCC-CCCceEEEEECcCcc
Confidence 33 3366888765432 2222 3333356677887741111 115689999998875
No 156
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=50.27 E-value=2.9e+02 Score=27.97 Aligned_cols=200 Identities=14% Similarity=0.098 Sum_probs=94.7
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCC--CcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDR--FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSV 175 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v 175 (518)
+++||+-.. ++ .+++||..+ ..|..-.. . . .+..-..+..++.+|+.- ....+
T Consensus 111 ~G~i~~g~~-~g-----~~y~ld~~~G~~~W~~~~~----------~-~-~~~~~~~v~~~~~v~~~s-------~~g~~ 165 (370)
T COG1520 111 DGKIYVGSW-DG-----KLYALDASTGTLVWSRNVG----------G-S-PYYASPPVVGDGTVYVGT-------DDGHL 165 (370)
T ss_pred CCeEEEecc-cc-----eEEEEECCCCcEEEEEecC----------C-C-eEEecCcEEcCcEEEEec-------CCCeE
Confidence 677666443 22 689999854 47887665 1 1 122233444456666653 12358
Q ss_pred EEEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCC--cEEEeecCCCCCCCCCC
Q 010115 176 WTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL--TWLPLHCTGTGPSPRSN 251 (518)
Q Consensus 176 ~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~g~~p~~r~~ 251 (518)
+.+|..+.+ |+.-...+ ...+.....+..++.+|+-. .+ ....++.+|+++. .|+.-. ..+..+..
T Consensus 166 ~al~~~tG~~~W~~~~~~~--~~~~~~~~~~~~~~~vy~~~-~~----~~~~~~a~~~~~G~~~w~~~~---~~~~~~~~ 235 (370)
T COG1520 166 YALNADTGTLKWTYETPAP--LSLSIYGSPAIASGTVYVGS-DG----YDGILYALNAEDGTLKWSQKV---SQTIGRTA 235 (370)
T ss_pred EEEEccCCcEEEEEecCCc--cccccccCceeecceEEEec-CC----CcceEEEEEccCCcEeeeeee---ecccCccc
Confidence 888888654 87554311 12233333334556666642 21 1125888999764 587532 11111110
Q ss_pred c-EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC--CeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEE
Q 010115 252 H-VAALYDDKNLLIFGGSSKSKTLNDLYSLDFET--MIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETL 328 (518)
Q Consensus 252 ~-~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~--~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~ 328 (518)
- ....+....+|+-|+.-.......++++|..+ ..|+.-........+........-++++|+............++
T Consensus 236 ~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~~~~~~~ 315 (370)
T COG1520 236 ISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDNDGRGSGSLY 315 (370)
T ss_pred ccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecccEeccCCeeEEeecCCCccEEEEEeccccccccceE
Confidence 0 01122222244444321111123477887754 45776543111111112122222367888775433322345567
Q ss_pred EEEC
Q 010115 329 IFDI 332 (518)
Q Consensus 329 ~yd~ 332 (518)
+++.
T Consensus 316 ~~~~ 319 (370)
T COG1520 316 ALAD 319 (370)
T ss_pred EEec
Confidence 7775
No 157
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=49.21 E-value=2.3e+02 Score=26.49 Aligned_cols=57 Identities=12% Similarity=0.044 Sum_probs=39.9
Q ss_pred eEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCc--EEEeeecCCCC-CCCcceEEEEECCEEEEEcc
Q 010115 150 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIP-VARSGHTVVRASSVLILFGG 215 (518)
Q Consensus 150 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p-~~r~~~~~~~~~~~iyv~GG 215 (518)
.++...++++|..-|..+ .+.+.++|+.+.+ |+.- ++ ..-++-..+..++.+|..-=
T Consensus 49 QGL~~~~g~i~esTG~yg----~S~ir~~~L~~gq~~~s~~-----l~~~~~FgEGit~~gd~~y~LTw 108 (262)
T COG3823 49 QGLEYLDGHILESTGLYG----FSKIRVSDLTTGQEIFSEK-----LAPDTVFGEGITKLGDYFYQLTW 108 (262)
T ss_pred cceeeeCCEEEEeccccc----cceeEEEeccCceEEEEee-----cCCccccccceeeccceEEEEEe
Confidence 456677889998888754 3468999999766 4432 33 34566677888999998743
No 158
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=48.86 E-value=3.4e+02 Score=28.48 Aligned_cols=94 Identities=18% Similarity=0.238 Sum_probs=50.4
Q ss_pred eEEEEECCCC-c-EEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCC
Q 010115 174 SVWTFDTETE-C-WSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (518)
Q Consensus 174 ~v~~yd~~t~-~-W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~ 250 (518)
.+.++|.+.+ . -+.+.. .+... ++++. ..+.+++.|+.+.. +.++|+++.+-...- .......
T Consensus 226 tiriwd~~~~~~~~~~l~g---H~~~v--~~~~f~p~g~~i~Sgs~D~t------vriWd~~~~~~~~~l---~~hs~~i 291 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLKTLKG---HSTYV--TSVAFSPDGNLLVSGSDDGT------VRIWDVRTGECVRKL---KGHSDGI 291 (456)
T ss_pred eEEEeeccCCCeEEEEecC---CCCce--EEEEecCCCCEEEEecCCCc------EEEEeccCCeEEEee---eccCCce
Confidence 5788888444 2 223321 33333 33333 34588898887654 888998885544432 1111211
Q ss_pred CcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeE
Q 010115 251 NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW 287 (518)
Q Consensus 251 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 287 (518)
.. ++.-.+..+++.+..++ .+..||..+..-
T Consensus 292 s~-~~f~~d~~~l~s~s~d~-----~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 292 SG-LAFSPDGNLLVSASYDG-----TIRVWDLETGSK 322 (456)
T ss_pred EE-EEECCCCCEEEEcCCCc-----cEEEEECCCCce
Confidence 11 22222333666665443 488999877663
No 159
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=47.53 E-value=3.1e+02 Score=27.64 Aligned_cols=147 Identities=16% Similarity=0.221 Sum_probs=73.2
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEEE
Q 010115 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (518)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 177 (518)
++.+.+.||.++ -.++++..+..|--.-+. . .-..-.+....++.+++.|+..+ .|.+
T Consensus 75 ~~~l~aTGGgDD-----~AflW~~~~ge~~~eltg----------H-KDSVt~~~FshdgtlLATGdmsG------~v~v 132 (399)
T KOG0296|consen 75 NNNLVATGGGDD-----LAFLWDISTGEFAGELTG----------H-KDSVTCCSFSHDGTLLATGDMSG------KVLV 132 (399)
T ss_pred CCceEEecCCCc-----eEEEEEccCCcceeEecC----------C-CCceEEEEEccCceEEEecCCCc------cEEE
Confidence 567888898663 457788887775433220 0 00011222344788888898865 3444
Q ss_pred EEC--CCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEE
Q 010115 178 FDT--ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (518)
Q Consensus 178 yd~--~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~ 255 (518)
+.. ...+|.......++---+.+. ...|+++|-.++ .+|+|.+.+..-.++- ..+..+....-.
T Consensus 133 ~~~stg~~~~~~~~e~~dieWl~WHp-----~a~illAG~~DG------svWmw~ip~~~~~kv~---~Gh~~~ct~G~f 198 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVEDIEWLKWHP-----RAHILLAGSTDG------SVWMWQIPSQALCKVM---SGHNSPCTCGEF 198 (399)
T ss_pred EEcccCceEEEeecccCceEEEEecc-----cccEEEeecCCC------cEEEEECCCcceeeEe---cCCCCCcccccc
Confidence 444 444576542212211111110 234666654443 4899988775444432 122222222222
Q ss_pred EECCcEEEEEcCCCCCCCCCcEEEEEcCCCe
Q 010115 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (518)
Q Consensus 256 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (518)
.-+++ -++.|-.+ ..+-.+|+++.+
T Consensus 199 ~pdGK-r~~tgy~d-----gti~~Wn~ktg~ 223 (399)
T KOG0296|consen 199 IPDGK-RILTGYDD-----GTIIVWNPKTGQ 223 (399)
T ss_pred cCCCc-eEEEEecC-----ceEEEEecCCCc
Confidence 22344 34444322 247888888763
No 160
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=47.48 E-value=2.2e+02 Score=29.00 Aligned_cols=184 Identities=11% Similarity=0.156 Sum_probs=88.8
Q ss_pred CcEEEEEcCCCc-EEEcccccccCCCCCCCCCCCccceEEEEE---CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEee
Q 010115 114 DDVQVLNFDRFS-WTAASSKLYLSPSSLPLKIPACRGHSLISW---GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVE 189 (518)
Q Consensus 114 ~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 189 (518)
+.+.++|..+++ -.+++.. . ..|..... +..+|+.+. + ..+-++|+.+.+= +.
T Consensus 16 ~~v~viD~~t~~~~~~i~~~-------------~-~~h~~~~~s~Dgr~~yv~~r-d------g~vsviD~~~~~~--v~ 72 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTG-------------G-APHAGLKFSPDGRYLYVANR-D------GTVSVIDLATGKV--VA 72 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-S-------------T-TEEEEEE-TT-SSEEEEEET-T------SEEEEEETTSSSE--EE
T ss_pred CEEEEEECCCCeEEEEEcCC-------------C-CceeEEEecCCCCEEEEEcC-C------CeEEEEECCcccE--EE
Confidence 578888888764 3344331 1 12544433 567999853 2 2588999999883 22
Q ss_pred ecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCCCcEEE-eecC---CCCCCCCCCcEEEEECCcEEEE
Q 010115 190 AKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-LHCT---GTGPSPRSNHVAALYDDKNLLI 264 (518)
Q Consensus 190 ~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~---g~~p~~r~~~~~~~~~~~~lyv 264 (518)
. .+......++++ .+++..+.+.+ ..+.+.++|.++.+=.+ ++.. ...+.+|...-....... .||
T Consensus 73 ~---i~~G~~~~~i~~s~DG~~~~v~n~-----~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~-~fV 143 (369)
T PF02239_consen 73 T---IKVGGNPRGIAVSPDGKYVYVANY-----EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP-EFV 143 (369)
T ss_dssp E---EE-SSEEEEEEE--TTTEEEEEEE-----ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS-EEE
T ss_pred E---EecCCCcceEEEcCCCCEEEEEec-----CCCceeEeccccccceeecccccccccccCCCceeEEecCCCC-EEE
Confidence 2 344444455554 34443333332 23568889987765333 2211 111334443222333444 455
Q ss_pred EcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEe
Q 010115 265 FGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (518)
Q Consensus 265 ~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 340 (518)
+--. -..++|..|.....=...... ...++-|-+... +++.|+.+-.. .+.+-+.|.++++-..+
T Consensus 144 v~lk----d~~~I~vVdy~d~~~~~~~~i---~~g~~~~D~~~dpdgry~~va~~~----sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 144 VNLK----DTGEIWVVDYSDPKNLKVTTI---KVGRFPHDGGFDPDGRYFLVAANG----SNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp EEET----TTTEEEEEETTTSSCEEEEEE---E--TTEEEEEE-TTSSEEEEEEGG----GTEEEEEETTTTEEEEE
T ss_pred EEEc----cCCeEEEEEeccccccceeee---cccccccccccCcccceeeecccc----cceeEEEeeccceEEEE
Confidence 4321 134788888654321111111 344555665555 34444444222 24788999888766554
No 161
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=47.26 E-value=3.2e+02 Score=27.69 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=66.0
Q ss_pred CEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEccc---CCCCcccCcEEEEEcCC
Q 010115 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGE---DGKRRKLNDLHMFDLKS 233 (518)
Q Consensus 157 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~~yd~~t 233 (518)
..+||.-...... .+.+.++|..+.+-...-+.+..| | +.+.-.+..||+.-.+ ...++..+.+.+||+.+
T Consensus 13 ~~v~V~d~~~~~~--~~~v~ViD~~~~~v~g~i~~G~~P--~--~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t 86 (352)
T TIGR02658 13 RRVYVLDPGHFAA--TTQVYTIDGEAGRVLGMTDGGFLP--N--PVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT 86 (352)
T ss_pred CEEEEECCccccc--CceEEEEECCCCEEEEEEEccCCC--c--eeECCCCCEEEEEeccccccccCCCCCEEEEEECcc
Confidence 4577775542211 267999999987654443323222 2 1223345689998663 22233467899999998
Q ss_pred CcEEEeecCCCCCCCC-----CCcEEEE-ECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEE
Q 010115 234 LTWLPLHCTGTGPSPR-----SNHVAAL-YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR 289 (518)
Q Consensus 234 ~~W~~~~~~g~~p~~r-----~~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 289 (518)
.+-..--.. .+.|| .-...++ -+++.+||.- ...-+.+-+.|+.+++-..
T Consensus 87 ~~~~~~i~~--p~~p~~~~~~~~~~~~ls~dgk~l~V~n----~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 87 HLPIADIEL--PEGPRFLVGTYPWMTSLTPDNKTLLFYQ----FSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CcEEeEEcc--CCCchhhccCccceEEECCCCCEEEEec----CCCCCEEEEEECCCCcEEE
Confidence 875532211 12233 2222333 3456677752 1223567888877665433
No 162
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=47.05 E-value=4.8e+02 Score=29.62 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=42.4
Q ss_pred CceEeccCCCCCCcceecccccccccCCCCCCCCeEEeccCCCCCCCc------cceEEEEECCEEEEEcCcCCCCCCCc
Q 010115 42 ECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPR------FNHAAAVIGNKMIVVGGESGNGLLDD 115 (518)
Q Consensus 42 ~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~R------~~~~~~~~~~~lyv~GG~~~~~~~~~ 115 (518)
+.-..+||...+..+.....+-.-|+ ..-...|+.-. |+.+.++ ...+-+++++.||+... .+.
T Consensus 136 ~~W~~yg~~~~~~RySpL~qIn~~NV--~~L~~aWt~~t--Gd~~~~~~~~~~~~e~TPlvvgg~lYv~t~------~~~ 205 (764)
T TIGR03074 136 GDWAAYGRTQAGQRYSPLDQINPDNV--GNLKVAWTYHT--GDLKTPDDPGEATFQATPLKVGDTLYLCTP------HNK 205 (764)
T ss_pred CCccccCCCCcccccCcccccCcccc--cCceEEEEEEC--CCccccccccccccccCCEEECCEEEEECC------CCe
Confidence 34666677554443322222111111 12446787643 3333322 23445678999999754 246
Q ss_pred EEEEEcCCC--cEEEccc
Q 010115 116 VQVLNFDRF--SWTAASS 131 (518)
Q Consensus 116 v~~yd~~~~--~W~~~~~ 131 (518)
++.+|..+. .|+.-..
T Consensus 206 V~ALDa~TGk~lW~~d~~ 223 (764)
T TIGR03074 206 VIALDAATGKEKWKFDPK 223 (764)
T ss_pred EEEEECCCCcEEEEEcCC
Confidence 888888764 6876543
No 163
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=46.92 E-value=3.4e+02 Score=27.85 Aligned_cols=110 Identities=12% Similarity=0.036 Sum_probs=51.2
Q ss_pred cEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceE
Q 010115 225 DLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCC 304 (518)
Q Consensus 225 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~ 304 (518)
.||..|.......++.. ..+....+|---..++..|+..+...+ ..-.-+..||+++..=+.+..+ +.+.|-
T Consensus 217 RiW~i~~dg~~~~~v~~--~~~~e~~gHEfw~~DG~~i~y~~~~~~-~~~~~i~~~d~~t~~~~~~~~~-----p~~~H~ 288 (386)
T PF14583_consen 217 RIWTINTDGSNVKKVHR--RMEGESVGHEFWVPDGSTIWYDSYTPG-GQDFWIAGYDPDTGERRRLMEM-----PWCSHF 288 (386)
T ss_dssp SEEEEETTS---EESS-----TTEEEEEEEE-TTSS-EEEEEEETT-T--EEEEEE-TTT--EEEEEEE------SEEEE
T ss_pred EEEEEEcCCCcceeeec--CCCCcccccccccCCCCEEEEEeecCC-CCceEEEeeCCCCCCceEEEeC-----Cceeee
Confidence 56777766555545531 233444444444555653433332221 1122478899988754445433 356777
Q ss_pred EEEECCEEEEEcccCCCC---------CcC--eEEEEECCCCceEEeec
Q 010115 305 GVLCGTKWYIAGGGSRKK---------RHA--ETLIFDILKGEWSVAIT 342 (518)
Q Consensus 305 ~~~~~~~iyv~GG~~~~~---------~~~--~v~~yd~~~~~W~~~~~ 342 (518)
.+..++++++--|.+... ..+ -++++++++..-..+..
T Consensus 289 ~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~ 337 (386)
T PF14583_consen 289 MSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLAR 337 (386)
T ss_dssp EE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE
T ss_pred EEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeee
Confidence 777788998877754211 112 35567787776655543
No 164
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=45.26 E-value=2.8e+02 Score=26.40 Aligned_cols=205 Identities=12% Similarity=0.106 Sum_probs=94.3
Q ss_pred CCEEEEEc--CcCCCC-CCceeEEEEECC-CCcEEEeeecC-----CCCCCCcceEEEEECCEEEEEcccCCCCcccCcE
Q 010115 156 GKKVLLVG--GKTDSG-SDRVSVWTFDTE-TECWSVVEAKG-----DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDL 226 (518)
Q Consensus 156 ~~~iyv~G--G~~~~~-~~~~~v~~yd~~-t~~W~~~~~~~-----~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 226 (518)
+++|+++- +..... ....-.+..... -.+|+...... ..+.+-.+..+...++.+++. .+..........
T Consensus 58 ~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~-~~~~~~~~~~~~ 136 (275)
T PF13088_consen 58 DGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAP-YYHESGGSFSAF 136 (275)
T ss_dssp TSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEE-EEEESSCEEEEE
T ss_pred CCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEE-EeeccccCcceE
Confidence 78888886 222211 111112345555 45799875310 111112222244457788876 221111112334
Q ss_pred EEEEcC-CCcEEEeecCCCCCCCCCCc-EEEEECCcEEEEEcCCCCCCCCCcEEEEEcC-CCeEEEeecCCCCCCCCcce
Q 010115 227 HMFDLK-SLTWLPLHCTGTGPSPRSNH-VAALYDDKNLLIFGGSSKSKTLNDLYSLDFE-TMIWTRIKIRGFHPSPRAGC 303 (518)
Q Consensus 227 ~~yd~~-t~~W~~~~~~g~~p~~r~~~-~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~-~~~W~~v~~~~~~p~~r~~~ 303 (518)
..|... -.+|+...... +...... +.+...+..|+++--..... .-.+.+..+ ..+|+..... ..|.+....
T Consensus 137 ~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~~~~--~~~~~~S~D~G~TWs~~~~~-~~~~~~~~~ 211 (275)
T PF13088_consen 137 VYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTEGND--DIYISRSTDGGRTWSPPQPT-NLPNPNSSI 211 (275)
T ss_dssp EEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEECSST--EEEEEEESSTTSS-EEEEEE-ECSSCCEEE
T ss_pred EEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEccCCC--cEEEEEECCCCCcCCCceec-ccCcccCCc
Confidence 445544 45699886321 2212222 23334555567664332111 223333333 5689987643 225555554
Q ss_pred EEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEE
Q 010115 304 CGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVA 369 (518)
Q Consensus 304 ~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v 369 (518)
.++.+ +++++++.........-.+++-.-...+|+........ +....+++..+... +++|+|
T Consensus 212 ~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~-~~~~~~Y~~~~~~~--dg~l~i 275 (275)
T PF13088_consen 212 SLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDG-PNGDSGYPSLTQLP--DGKLYI 275 (275)
T ss_dssp EEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEE-E-CCEEEEEEEEEE--TTEEEE
T ss_pred eEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCC-CCCcEECCeeEEeC--CCcCCC
Confidence 54554 67888887732222222334444457899875432211 12345666666653 245654
No 165
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=45.18 E-value=3.9e+02 Score=28.07 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=35.3
Q ss_pred CcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEee
Q 010115 224 NDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIK 291 (518)
Q Consensus 224 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~ 291 (518)
+.+.+||..+..-..+. .+.++.....+.-+++ ..+.+-. .-++|.+|+++++=+.+.
T Consensus 382 D~l~iyd~~~~e~kr~e----~~lg~I~av~vs~dGK-~~vvaNd-----r~el~vididngnv~~id 439 (668)
T COG4946 382 DKLGIYDKDGGEVKRIE----KDLGNIEAVKVSPDGK-KVVVAND-----RFELWVIDIDNGNVRLID 439 (668)
T ss_pred ceEEEEecCCceEEEee----CCccceEEEEEcCCCc-EEEEEcC-----ceEEEEEEecCCCeeEec
Confidence 35788888887777663 3444444444444455 4444422 236899999888766554
No 166
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=44.70 E-value=2.5e+02 Score=25.64 Aligned_cols=72 Identities=8% Similarity=0.059 Sum_probs=43.8
Q ss_pred CCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCE-EEEEcCcCCCCCCceeEEEEECCCCcEEEee
Q 010115 111 GLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKK-VLLVGGKTDSGSDRVSVWTFDTETECWSVVE 189 (518)
Q Consensus 111 ~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 189 (518)
....++|++|..++.|..+...... ....|. ...-..+.. ++++|...+.-..-..+|.|++.++.-+.+.
T Consensus 85 EgiGkIYIkn~~~~~~~~L~i~~~~------~k~sPK--~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly 156 (200)
T PF15525_consen 85 EGIGKIYIKNLNNNNWWSLQIDQNE------EKYSPK--YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELY 156 (200)
T ss_pred ccceeEEEEecCCCceEEEEecCcc------cccCCc--eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEee
Confidence 3467899999999988776542110 011122 333344444 5555544333333447999999999988887
Q ss_pred e
Q 010115 190 A 190 (518)
Q Consensus 190 ~ 190 (518)
.
T Consensus 157 ~ 157 (200)
T PF15525_consen 157 E 157 (200)
T ss_pred e
Confidence 5
No 167
>PRK10115 protease 2; Provisional
Probab=43.63 E-value=5.1e+02 Score=28.97 Aligned_cols=126 Identities=13% Similarity=0.138 Sum_probs=69.8
Q ss_pred EEEEECCEEEEEcCcCCCCCCceeEEEEECC-CCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEE
Q 010115 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTE-TECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMF 229 (518)
Q Consensus 151 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~-t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y 229 (518)
.....++.+|+.--... ....+...++. +.+|+.+.+. ...+.--.+...++.|++..-.+. ...++++
T Consensus 274 ~~~~~~~~ly~~tn~~~---~~~~l~~~~~~~~~~~~~l~~~---~~~~~i~~~~~~~~~l~~~~~~~g----~~~l~~~ 343 (686)
T PRK10115 274 SLDHYQHRFYLRSNRHG---KNFGLYRTRVRDEQQWEELIPP---RENIMLEGFTLFTDWLVVEERQRG----LTSLRQI 343 (686)
T ss_pred EEEeCCCEEEEEEcCCC---CCceEEEecCCCcccCeEEECC---CCCCEEEEEEEECCEEEEEEEeCC----EEEEEEE
Confidence 33444688888754322 22347777777 5789988751 112222234445787777754433 3458888
Q ss_pred EcCCCcEEEeecCCCCCCCCCCcEEEE---EC-CcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecC
Q 010115 230 DLKSLTWLPLHCTGTGPSPRSNHVAAL---YD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR 293 (518)
Q Consensus 230 d~~t~~W~~~~~~g~~p~~r~~~~~~~---~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~ 293 (518)
|..+.....+. ++.+........ .+ +..++.+.+. ....+++.||+.+.+|+.+...
T Consensus 344 ~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~ss~---~~P~~~y~~d~~~~~~~~l~~~ 404 (686)
T PRK10115 344 NRKTREVIGIA----FDDPAYVTWIAYNPEPETSRLRYGYSSM---TTPDTLFELDMDTGERRVLKQT 404 (686)
T ss_pred cCCCCceEEec----CCCCceEeeecccCCCCCceEEEEEecC---CCCCEEEEEECCCCcEEEEEec
Confidence 87666665553 222222211111 11 2333333333 3346899999999999888753
No 168
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=41.94 E-value=2.4e+02 Score=24.73 Aligned_cols=86 Identities=12% Similarity=0.150 Sum_probs=44.6
Q ss_pred EECCcEEEEEcCCCCCCCCCcEEEEEcCCCeE-EEeecCCCCCC-CCcceEEEEE-CCEEEEEcccCCCCCcCeEEEEEC
Q 010115 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW-TRIKIRGFHPS-PRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDI 332 (518)
Q Consensus 256 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W-~~v~~~~~~p~-~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~ 332 (518)
.++|. +|=+.-........-|..||+.+.+. +.++.+ .... ........++ +++|-++-- ......-++|+.+-
T Consensus 3 ~vnG~-~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP-~~~~~~~~~~~L~~v~~~~L~~~~~-~~~~~~~~IWvm~~ 79 (164)
T PF07734_consen 3 FVNGA-LHWLAYDENNDEKDFILSFDLSTEKFGRSLPLP-FCNDDDDDSVSLSVVRGDCLCVLYQ-CDETSKIEIWVMKK 79 (164)
T ss_pred EECCE-EEeeEEecCCCCceEEEEEeccccccCCEECCC-CccCccCCEEEEEEecCCEEEEEEe-ccCCccEEEEEEee
Confidence 45555 44443332222112599999999999 554322 1111 1112223223 677777732 12222367888762
Q ss_pred ---CCCceEEeecCC
Q 010115 333 ---LKGEWSVAITSP 344 (518)
Q Consensus 333 ---~~~~W~~~~~~~ 344 (518)
....|+++-..+
T Consensus 80 ~~~~~~SWtK~~~i~ 94 (164)
T PF07734_consen 80 YGYGKESWTKLFTID 94 (164)
T ss_pred eccCcceEEEEEEEe
Confidence 367999986544
No 169
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=40.12 E-value=4.5e+02 Score=27.28 Aligned_cols=80 Identities=9% Similarity=0.148 Sum_probs=41.9
Q ss_pred eEEEEECCCCc-EEEeeecCCCCCCCcceEEEEEC--CEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCC
Q 010115 174 SVWTFDTETEC-WSVVEAKGDIPVARSGHTVVRAS--SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (518)
Q Consensus 174 ~v~~yd~~t~~-W~~~~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~ 250 (518)
+|..+|+...+ ...+. ++... .-....++ +...+++|.+- .++.|+-++..|+++. ..+.--.
T Consensus 412 ~V~lwDLRKl~n~kt~~----l~~~~-~v~s~~fD~SGt~L~~~g~~l------~Vy~~~k~~k~W~~~~---~~~~~sg 477 (506)
T KOG0289|consen 412 SVKLWDLRKLKNFKTIQ----LDEKK-EVNSLSFDQSGTYLGIAGSDL------QVYICKKKTKSWTEIK---ELADHSG 477 (506)
T ss_pred eEEEEEehhhcccceee----ccccc-cceeEEEcCCCCeEEeeccee------EEEEEecccccceeee---hhhhccc
Confidence 37888887655 22222 22222 22223333 56666665432 3788888899999997 3332222
Q ss_pred CcEEEEECCcEEEEEcC
Q 010115 251 NHVAALYDDKNLLIFGG 267 (518)
Q Consensus 251 ~~~~~~~~~~~lyv~GG 267 (518)
-...+-++...-|++-|
T Consensus 478 ~st~v~Fg~~aq~l~s~ 494 (506)
T KOG0289|consen 478 LSTGVRFGEHAQYLAST 494 (506)
T ss_pred ccceeeecccceEEeec
Confidence 22344455443444433
No 170
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=38.68 E-value=3.9e+02 Score=26.15 Aligned_cols=143 Identities=12% Similarity=0.122 Sum_probs=84.5
Q ss_pred ceEEEEECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEE
Q 010115 149 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLH 227 (518)
Q Consensus 149 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~ 227 (518)
.-+....+++.+++|+.. .+..-|-.-.+|.+.. .+..|+.+..+. .+.+=++.|- -..++
T Consensus 47 ~ia~~~~g~~gwlVg~rg-------tiletdd~g~tw~qal----~~~gr~~f~sv~f~~~egw~vGe-------~sqll 108 (339)
T COG4447 47 DIAFTESGSHGWLVGGRG-------TILETDDGGITWAQAL----DFLGRHAFHSVSFLGMEGWIVGE-------PSQLL 108 (339)
T ss_pred ceeEeecCcceEEEcCcc-------eEEEecCCcccchhhh----chhhhhheeeeeeecccccccCC-------cceEE
Confidence 345555678999999985 3666677788998765 455566555544 4444555431 13355
Q ss_pred EEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEE
Q 010115 228 MFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL 307 (518)
Q Consensus 228 ~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~ 307 (518)
.=+-.-.+|.+++....+|-+ -.+...++++.-+++|-+ ..|+.-+-..+.|+.+..... +......-+..
T Consensus 109 ~T~DgGqsWARi~~~e~~eg~--~~sI~f~d~q~g~m~gd~------Gail~T~DgGk~Wk~l~e~~v-~~~~~n~ia~s 179 (339)
T COG4447 109 HTTDGGQSWARIPLSEKLEGF--PDSITFLDDQRGEMLGDQ------GAILKTTDGGKNWKALVEKAV-GLAVPNEIARS 179 (339)
T ss_pred EecCCCcchhhchhhcCCCCC--cceeEEecchhhhhhccc------ceEEEecCCcccHhHhccccc-chhhhhhhhhh
Confidence 555566789998654333322 234566677656777653 246666667788998876422 21111122333
Q ss_pred ECCEEEEEccc
Q 010115 308 CGTKWYIAGGG 318 (518)
Q Consensus 308 ~~~~iyv~GG~ 318 (518)
.++..+++|-.
T Consensus 180 ~dng~vaVg~r 190 (339)
T COG4447 180 ADNGYVAVGAR 190 (339)
T ss_pred ccCCeEEEecC
Confidence 46666666643
No 171
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=38.12 E-value=3.6e+02 Score=25.65 Aligned_cols=102 Identities=16% Similarity=0.198 Sum_probs=64.7
Q ss_pred ECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceE----EEEEC--CEEEEEcccCCCCcccCcEEE
Q 010115 155 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHT----VVRAS--SVLILFGGEDGKRRKLNDLHM 228 (518)
Q Consensus 155 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~----~~~~~--~~iyv~GG~~~~~~~~~~~~~ 228 (518)
.++.=+..||-+. .++.+|..|++-...- .+|. .+.++ ..+.+-|+.+.. +..
T Consensus 69 ~Dnskf~s~GgDk------~v~vwDV~TGkv~Rr~---------rgH~aqVNtV~fNeesSVv~SgsfD~s------~r~ 127 (307)
T KOG0316|consen 69 SDNSKFASCGGDK------AVQVWDVNTGKVDRRF---------RGHLAQVNTVRFNEESSVVASGSFDSS------VRL 127 (307)
T ss_pred ccccccccCCCCc------eEEEEEcccCeeeeec---------ccccceeeEEEecCcceEEEeccccce------eEE
Confidence 3444455555422 5888999988743221 1122 12233 467777776644 778
Q ss_pred EEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCe
Q 010115 229 FDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (518)
Q Consensus 229 yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (518)
+|-.++..+.+. -+...+..-..+.+.+. .+|.|-.++ .+-.||+..++
T Consensus 128 wDCRS~s~ePiQ---ildea~D~V~Si~v~~h-eIvaGS~DG-----tvRtydiR~G~ 176 (307)
T KOG0316|consen 128 WDCRSRSFEPIQ---ILDEAKDGVSSIDVAEH-EIVAGSVDG-----TVRTYDIRKGT 176 (307)
T ss_pred EEcccCCCCccc---hhhhhcCceeEEEeccc-EEEeeccCC-----cEEEEEeecce
Confidence 999888888876 56667777777778887 666665554 37889887654
No 172
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=37.74 E-value=4.1e+02 Score=27.64 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=34.6
Q ss_pred ceEEEEECCEEEEEcC-cCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcc--eEEEE-ECCEEEEEcccCCC
Q 010115 149 GHSLISWGKKVLLVGG-KTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG--HTVVR-ASSVLILFGGEDGK 219 (518)
Q Consensus 149 ~~~~~~~~~~iyv~GG-~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~--~~~~~-~~~~iyv~GG~~~~ 219 (518)
-++++..+.-.|++|| ..+ ++|.+.+.++.--.+- .+.|. -+... .++..++-||.++.
T Consensus 84 v~al~s~n~G~~l~ag~i~g------~lYlWelssG~LL~v~------~aHYQ~ITcL~fs~dgs~iiTgskDg~ 146 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISG------NLYLWELSSGILLNVL------SAHYQSITCLKFSDDGSHIITGSKDGA 146 (476)
T ss_pred eeeeecCCCceEEEeecccC------cEEEEEeccccHHHHH------HhhccceeEEEEeCCCcEEEecCCCcc
Confidence 4778888877888887 432 5888887776522111 11111 11122 35788888887764
No 173
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=36.74 E-value=5.2e+02 Score=27.10 Aligned_cols=146 Identities=14% Similarity=0.126 Sum_probs=73.3
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCc
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 235 (518)
.+.+++.|+.+. .|..+|..+.+=...-. .-..........-++.+++.+..+ ..+.+||+.+..
T Consensus 257 ~g~~i~Sgs~D~------tvriWd~~~~~~~~~l~---~hs~~is~~~f~~d~~~l~s~s~d------~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 257 DGNLLVSGSDDG------TVRIWDVRTGECVRKLK---GHSDGISGLAFSPDGNLLVSASYD------GTIRVWDLETGS 321 (456)
T ss_pred CCCEEEEecCCC------cEEEEeccCCeEEEeee---ccCCceEEEEECCCCCEEEEcCCC------ccEEEEECCCCc
Confidence 457888888764 58888998855433321 111112222222356777776543 348889987776
Q ss_pred EE---EeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCe----EEEeecCCCCCCCCcceEEEEE
Q 010115 236 WL---PLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI----WTRIKIRGFHPSPRAGCCGVLC 308 (518)
Q Consensus 236 W~---~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~----W~~v~~~~~~p~~r~~~~~~~~ 308 (518)
-. .+. ....+.....+....+. .|++-+... +.+-.+|+.... |..... ..++....+..
T Consensus 322 ~~~~~~~~---~~~~~~~~~~~~fsp~~-~~ll~~~~d----~~~~~w~l~~~~~~~~~~~~~~-----~~~~~~~~~~~ 388 (456)
T KOG0266|consen 322 KLCLKLLS---GAENSAPVTSVQFSPNG-KYLLSASLD----RTLKLWDLRSGKSVGTYTGHSN-----LVRCIFSPTLS 388 (456)
T ss_pred eeeeeccc---CCCCCCceeEEEECCCC-cEEEEecCC----CeEEEEEccCCcceeeecccCC-----cceeEeccccc
Confidence 43 221 11112122233333455 344444322 135555654332 222211 11344444434
Q ss_pred -CCEEEEEcccCCCCCcCeEEEEECCC
Q 010115 309 -GTKWYIAGGGSRKKRHAETLIFDILK 334 (518)
Q Consensus 309 -~~~iyv~GG~~~~~~~~~v~~yd~~~ 334 (518)
++++.+.|+.+. .++.+|+.+
T Consensus 389 ~~~~~i~sg~~d~-----~v~~~~~~s 410 (456)
T KOG0266|consen 389 TGGKLIYSGSEDG-----SVYVWDSSS 410 (456)
T ss_pred CCCCeEEEEeCCc-----eEEEEeCCc
Confidence 566666666543 388898886
No 174
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=36.55 E-value=4.8e+02 Score=26.66 Aligned_cols=103 Identities=13% Similarity=0.083 Sum_probs=56.0
Q ss_pred CCCeEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEE
Q 010115 73 SENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSL 152 (518)
Q Consensus 73 ~~~W~~l~~~~~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~ 152 (518)
.+.|+.+. . . .-..--++.++|++|++.- ...++.++.+- .=.++.+.....+ .........-+
T Consensus 189 ~~~Wt~l~---~-~-~~~~~DIi~~kGkfYAvD~------~G~l~~i~~~l-~i~~v~~~i~~~~----~~g~~~~~~yL 252 (373)
T PLN03215 189 GNVLKALK---Q-M-GYHFSDIIVHKGQTYALDS------IGIVYWINSDL-EFSRFGTSLDENI----TDGCWTGDRRF 252 (373)
T ss_pred CCeeeEcc---C-C-CceeeEEEEECCEEEEEcC------CCeEEEEecCC-ceeeecceecccc----cCCcccCceeE
Confidence 47899985 2 2 2234566778999999832 23466666431 1112211100000 00000112346
Q ss_pred EEECCEEEEEcCcCCCC-------------CCceeEEEEECCCCcEEEeeec
Q 010115 153 ISWGKKVLLVGGKTDSG-------------SDRVSVWTFDTETECWSVVEAK 191 (518)
Q Consensus 153 ~~~~~~iyv~GG~~~~~-------------~~~~~v~~yd~~t~~W~~~~~~ 191 (518)
|...+++|++....... ...-.|++.|.+..+|.++..-
T Consensus 253 VEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sL 304 (373)
T PLN03215 253 VECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTL 304 (373)
T ss_pred EEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEeccc
Confidence 66678899887753211 1123578889999999999863
No 175
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=36.51 E-value=3.6e+02 Score=27.10 Aligned_cols=86 Identities=15% Similarity=0.240 Sum_probs=49.5
Q ss_pred cEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcc-e
Q 010115 225 DLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-C 303 (518)
Q Consensus 225 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~-~ 303 (518)
.+-.++..|...... +..-+.+-++..++++ ++|-|..+ +.+-.+|.+.+.--++- .+... .
T Consensus 341 TikvW~~st~efvRt-----l~gHkRGIAClQYr~r-lvVSGSSD-----ntIRlwdi~~G~cLRvL------eGHEeLv 403 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRT-----LNGHKRGIACLQYRDR-LVVSGSSD-----NTIRLWDIECGACLRVL------EGHEELV 403 (499)
T ss_pred eEEEEeccceeeehh-----hhcccccceehhccCe-EEEecCCC-----ceEEEEeccccHHHHHH------hchHHhh
Confidence 456667666555443 3334455567788888 77776543 34777777655322211 11000 1
Q ss_pred EEEEECCEEEEEcccCCCCCcCeEEEEEC
Q 010115 304 CGVLCGTKWYIAGGGSRKKRHAETLIFDI 332 (518)
Q Consensus 304 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 332 (518)
-++.++++=+|-||+++. +-++|+
T Consensus 404 RciRFd~krIVSGaYDGk-----ikvWdl 427 (499)
T KOG0281|consen 404 RCIRFDNKRIVSGAYDGK-----IKVWDL 427 (499)
T ss_pred hheeecCceeeeccccce-----EEEEec
Confidence 245578898999998765 555544
No 176
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=35.69 E-value=5.2e+02 Score=26.80 Aligned_cols=120 Identities=11% Similarity=0.166 Sum_probs=62.2
Q ss_pred cceEEEEEC-CEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCc-EEEEECCcEEEEEcCCCCCCCCCc
Q 010115 199 SGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH-VAALYDDKNLLIFGGSSKSKTLND 276 (518)
Q Consensus 199 ~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~-~~~~~~~~~lyv~GG~~~~~~~~~ 276 (518)
..++++... +-|+..|-.+ ..+-+||+++.. .++ .+|.--.-- +...-+++ .|+.-+.+.. .
T Consensus 349 ~~ts~~fHpDgLifgtgt~d------~~vkiwdlks~~--~~a---~Fpght~~vk~i~FsENG-Y~Lat~add~----~ 412 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTPD------GVVKIWDLKSQT--NVA---KFPGHTGPVKAISFSENG-YWLATAADDG----S 412 (506)
T ss_pred eeEEeeEcCCceEEeccCCC------ceEEEEEcCCcc--ccc---cCCCCCCceeEEEeccCc-eEEEEEecCC----e
Confidence 344555544 4455444333 237789988776 333 344311111 22334566 4554444332 3
Q ss_pred EEEEEcCCCe-EEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCC
Q 010115 277 LYSLDFETMI-WTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSP 344 (518)
Q Consensus 277 v~~yd~~~~~-W~~v~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~ 344 (518)
|..||+.... .+.+.. +... ......+ .++..+++|.+ -.||.|+-.+..|+++...+
T Consensus 413 V~lwDLRKl~n~kt~~l----~~~~-~v~s~~fD~SGt~L~~~g~~-----l~Vy~~~k~~k~W~~~~~~~ 473 (506)
T KOG0289|consen 413 VKLWDLRKLKNFKTIQL----DEKK-EVNSLSFDQSGTYLGIAGSD-----LQVYICKKKTKSWTEIKELA 473 (506)
T ss_pred EEEEEehhhcccceeec----cccc-cceeEEEcCCCCeEEeecce-----eEEEEEecccccceeeehhh
Confidence 8888986543 222221 1111 2223333 46677777643 23788888899999987543
No 177
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.35 E-value=5.6e+02 Score=26.15 Aligned_cols=96 Identities=20% Similarity=0.150 Sum_probs=49.5
Q ss_pred eeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCc
Q 010115 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (518)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~ 252 (518)
..|-.||+..+. +.+....-+-.+...-+.+.-++.||+ | ....++..||..+.+--.....|-.-..|+
T Consensus 226 hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~-g------n~~g~l~~FD~r~~kl~g~~~kg~tGsirs-- 295 (412)
T KOG3881|consen 226 HQVRLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYT-G------NTKGQLAKFDLRGGKLLGCGLKGITGSIRS-- 295 (412)
T ss_pred eeEEEecCcccC-cceeEeccccCcceeeeecCCCcEEEE-e------cccchhheecccCceeeccccCCccCCcce--
Confidence 468889998665 333321112233333222333445554 3 334568889987765443322222222332
Q ss_pred EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC
Q 010115 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFET 284 (518)
Q Consensus 253 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~ 284 (518)
...+.+..++..+|.+.. +-+||.++
T Consensus 296 -ih~hp~~~~las~GLDRy-----vRIhD~kt 321 (412)
T KOG3881|consen 296 -IHCHPTHPVLASCGLDRY-----VRIHDIKT 321 (412)
T ss_pred -EEEcCCCceEEeecccee-----EEEeeccc
Confidence 344555447777776542 66777766
No 178
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=31.98 E-value=4e+02 Score=24.34 Aligned_cols=77 Identities=17% Similarity=0.279 Sum_probs=45.4
Q ss_pred ccCCCCcccCcEEEEEcCCCcEEEeecCCC--CCCCCCCcEEEEECCcEEEEEcCCCC-CCCCCcEEEEEcCCCeEEEee
Q 010115 215 GEDGKRRKLNDLHMFDLKSLTWLPLHCTGT--GPSPRSNHVAALYDDKNLLIFGGSSK-SKTLNDLYSLDFETMIWTRIK 291 (518)
Q Consensus 215 G~~~~~~~~~~~~~yd~~t~~W~~~~~~g~--~p~~r~~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~~~~W~~v~ 291 (518)
|.+...+-..++|++|..++.|..+..... --.|. .....-+...++|+|..-+ -.--..+|.|++.+++=+.+.
T Consensus 79 g~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK--~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly 156 (200)
T PF15525_consen 79 GPEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK--YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELY 156 (200)
T ss_pred CCccccccceeEEEEecCCCceEEEEecCcccccCCc--eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEee
Confidence 333334457889999999988876642211 11233 2233334455555653221 112257999999999988887
Q ss_pred cC
Q 010115 292 IR 293 (518)
Q Consensus 292 ~~ 293 (518)
..
T Consensus 157 ~~ 158 (200)
T PF15525_consen 157 EW 158 (200)
T ss_pred ec
Confidence 65
No 179
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=31.87 E-value=4.6e+02 Score=25.04 Aligned_cols=162 Identities=12% Similarity=0.110 Sum_probs=88.6
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEEC----CCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEc
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDT----ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL 231 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~----~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~ 231 (518)
++++|++.+.. ...+..|.. ....|.+.-- +|.+-.+..-+++++.+|.-.+ ....+.+||+
T Consensus 30 ~~r~~~~~~~~-----~~~l~E~~~~~~~~~~~~~~~~~---lp~~~~gTg~VVynGs~yynk~------~t~~ivky~l 95 (249)
T KOG3545|consen 30 DDRIYVMNYFD-----GLMLTEYTNLEDFKRGRKAEKYR---LPYSWDGTGHVVYNGSLYYNKA------GTRNIIKYDL 95 (249)
T ss_pred cCceEEecccc-----CceEEEeccHHHhhccCcceEEe---CCCCccccceEEEcceEEeecc------CCcceEEEEe
Confidence 67888884432 234666654 2344555543 8888888888999999998653 2455889999
Q ss_pred CCC---cEEEeecCCCCCC---CCCC---cEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC----CeEEEeecCCCCCC
Q 010115 232 KSL---TWLPLHCTGTGPS---PRSN---HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET----MIWTRIKIRGFHPS 298 (518)
Q Consensus 232 ~t~---~W~~~~~~g~~p~---~r~~---~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~----~~W~~v~~~~~~p~ 298 (518)
.+. .|+.++..+.... .-.+ .=.++.++. |+++=-..+..-.--+-++|+.+ .+|..-- .
T Consensus 96 ~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~G-LWviYat~~~~g~iv~skLdp~tl~~e~tW~T~~------~ 168 (249)
T KOG3545|consen 96 ETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENG-LWVIYATPENAGTIVLSKLDPETLEVERTWNTTL------P 168 (249)
T ss_pred ecceeeeeeeccccccCCCcccccCCCccccceecccc-eeEEecccccCCcEEeeccCHHHhheeeeecccc------C
Confidence 874 3555543221111 1111 113344455 44432221111112245667643 4453321 2
Q ss_pred CCcceEEEEECCEEEEEcccCCCCCcCeE-EEEECCCCceEEe
Q 010115 299 PRAGCCGVLCGTKWYIAGGGSRKKRHAET-LIFDILKGEWSVA 340 (518)
Q Consensus 299 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~v-~~yd~~~~~W~~~ 340 (518)
.+....+.++=|.+|++-...... ..+ +.||..+++=..+
T Consensus 169 k~~~~~aF~iCGvLY~v~S~~~~~--~~i~yaydt~~~~~~~~ 209 (249)
T KOG3545|consen 169 KRSAGNAFMICGVLYVVHSYNCTH--TQISYAYDTTTGTQERI 209 (249)
T ss_pred CCCcCceEEEeeeeEEEeccccCC--ceEEEEEEcCCCceecc
Confidence 233345566677888886654432 224 7999988877554
No 180
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=31.76 E-value=4.6e+02 Score=29.03 Aligned_cols=104 Identities=13% Similarity=0.105 Sum_probs=50.4
Q ss_pred CEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeE
Q 010115 208 SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW 287 (518)
Q Consensus 208 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 287 (518)
+.-|++.|... ..+.++|..+..-.++= .| ..+.-.+.++...+..++.|+.++ .|..||+.+..
T Consensus 546 Ns~Y~aTGSsD-----~tVRlWDv~~G~~VRiF-~G---H~~~V~al~~Sp~Gr~LaSg~ed~-----~I~iWDl~~~~- 610 (707)
T KOG0263|consen 546 NSNYVATGSSD-----RTVRLWDVSTGNSVRIF-TG---HKGPVTALAFSPCGRYLASGDEDG-----LIKIWDLANGS- 610 (707)
T ss_pred cccccccCCCC-----ceEEEEEcCCCcEEEEe-cC---CCCceEEEEEcCCCceEeecccCC-----cEEEEEcCCCc-
Confidence 45566665322 23555666555544442 11 122223344444443566665544 48888877643
Q ss_pred EEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEECC
Q 010115 288 TRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 333 (518)
Q Consensus 288 ~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 333 (518)
.+..+-.. ..-...-....++.+++.||.+.. |..+|..
T Consensus 611 -~v~~l~~H-t~ti~SlsFS~dg~vLasgg~Dns-----V~lWD~~ 649 (707)
T KOG0263|consen 611 -LVKQLKGH-TGTIYSLSFSRDGNVLASGGADNS-----VRLWDLT 649 (707)
T ss_pred -chhhhhcc-cCceeEEEEecCCCEEEecCCCCe-----EEEEEch
Confidence 12111000 111111122248999999997754 5565654
No 181
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=28.37 E-value=1.2e+02 Score=19.36 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=16.1
Q ss_pred eEEEEECCEEEEEcCcCCCCCCceeEEEEECCC
Q 010115 150 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTET 182 (518)
Q Consensus 150 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t 182 (518)
.+.++.++.||+.+.. ..++.+|++|
T Consensus 15 ~~~~v~~g~vyv~~~d-------g~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGD-------GNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TT-------SEEEEEETT-
T ss_pred cCCEEECCEEEEEcCC-------CEEEEEeCCC
Confidence 3446668888887653 2689998865
No 182
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.64 E-value=6.4e+02 Score=24.99 Aligned_cols=118 Identities=17% Similarity=0.127 Sum_probs=64.6
Q ss_pred CCCCCCcEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceE--EEEECC-EEEEEcccCCC
Q 010115 246 PSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCC--GVLCGT-KWYIAGGGSRK 321 (518)
Q Consensus 246 p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~--~~~~~~-~iyv~GG~~~~ 321 (518)
|.|-..|.++... ...+++|+=.-+ .-+++||+.+.+=...-.. |..|.+++ +..-++ .+|..-.. ..
T Consensus 2 ~lP~RgH~~a~~p~~~~avafaRRPG----~~~~v~D~~~g~~~~~~~a---~~gRHFyGHg~fs~dG~~LytTEnd-~~ 73 (305)
T PF07433_consen 2 PLPARGHGVAAHPTRPEAVAFARRPG----TFALVFDCRTGQLLQRLWA---PPGRHFYGHGVFSPDGRLLYTTEND-YE 73 (305)
T ss_pred CCCccccceeeCCCCCeEEEEEeCCC----cEEEEEEcCCCceeeEEcC---CCCCEEecCEEEcCCCCEEEEeccc-cC
Confidence 3444567777776 344677764322 3588999988764443322 56666544 433344 55655332 22
Q ss_pred CCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCC
Q 010115 322 KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE 376 (518)
Q Consensus 322 ~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~ 376 (518)
....-|-+||.. ....++...+.. ..--|-+..+. +++.-++.-||....
T Consensus 74 ~g~G~IgVyd~~-~~~~ri~E~~s~---GIGPHel~l~p-DG~tLvVANGGI~Th 123 (305)
T PF07433_consen 74 TGRGVIGVYDAA-RGYRRIGEFPSH---GIGPHELLLMP-DGETLVVANGGIETH 123 (305)
T ss_pred CCcEEEEEEECc-CCcEEEeEecCC---CcChhhEEEcC-CCCEEEEEcCCCccC
Confidence 233557899988 566666544322 11224555444 333445557887544
No 183
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=26.61 E-value=7.1e+02 Score=25.49 Aligned_cols=98 Identities=11% Similarity=0.048 Sum_probs=53.5
Q ss_pred CCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecC--CCCCCCC--cceEEEEE
Q 010115 233 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR--GFHPSPR--AGCCGVLC 308 (518)
Q Consensus 233 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~--~~~p~~r--~~~~~~~~ 308 (518)
.+.|+.+. . ...+ .--++.++|+ +|++.- ...++.++.+- .-+++.+. +.+...+ ...-.|..
T Consensus 189 ~~~Wt~l~---~-~~~~-~~DIi~~kGk-fYAvD~------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs 255 (373)
T PLN03215 189 GNVLKALK---Q-MGYH-FSDIIVHKGQ-TYALDS------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVEC 255 (373)
T ss_pred CCeeeEcc---C-CCce-eeEEEEECCE-EEEEcC------CCeEEEEecCC-ceeeecceecccccCCcccCceeEEEE
Confidence 48999995 2 2222 3346678888 898832 24577777432 11222211 0000111 12234556
Q ss_pred CCEEEEEcccCCCC--------------CcCeEEEEECCCCceEEeecC
Q 010115 309 GTKWYIAGGGSRKK--------------RHAETLIFDILKGEWSVAITS 343 (518)
Q Consensus 309 ~~~iyv~GG~~~~~--------------~~~~v~~yd~~~~~W~~~~~~ 343 (518)
.|+++++....... ..-+|+.+|.+..+|.++...
T Consensus 256 ~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sL 304 (373)
T PLN03215 256 CGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTL 304 (373)
T ss_pred CCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEeccc
Confidence 78899888742110 112467778888999998754
No 184
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=26.55 E-value=6.8e+02 Score=25.25 Aligned_cols=72 Identities=18% Similarity=0.294 Sum_probs=38.7
Q ss_pred CCEEEEEc--ccC--CCCCcCeEEEEECCCCceEEeecCCCCCCCCCCCceEEEEeeCCccEEEEEcCCCCCCCCcEEEE
Q 010115 309 GTKWYIAG--GGS--RKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL 384 (518)
Q Consensus 309 ~~~iyv~G--G~~--~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~y 384 (518)
.++|||+- |.. .+....+||+||+++.+=-.-. +...+ .-+ +.+...++..||.+-+.+ ..+.+|
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri--~l~~~----~~S-i~Vsqd~~P~L~~~~~~~----~~l~v~ 317 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARI--PLEHP----IDS-IAVSQDDKPLLYALSAGD----GTLDVY 317 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEE--EEEEE----ESE-EEEESSSS-EEEEEETTT----TEEEEE
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEE--eCCCc----cce-EEEccCCCcEEEEEcCCC----CeEEEE
Confidence 67999874 211 2335578999999997643322 11101 113 344445667788653321 279999
Q ss_pred EcccCCc
Q 010115 385 SIEKNES 391 (518)
Q Consensus 385 d~~~~~w 391 (518)
|..+.+-
T Consensus 318 D~~tGk~ 324 (342)
T PF06433_consen 318 DAATGKL 324 (342)
T ss_dssp ETTT--E
T ss_pred eCcCCcE
Confidence 9988763
No 185
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=25.82 E-value=6.5e+02 Score=24.83 Aligned_cols=129 Identities=17% Similarity=0.199 Sum_probs=66.8
Q ss_pred eEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcE
Q 010115 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (518)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~ 253 (518)
++-.||..++.-...-. ..+| --.++..+..=.+.||.++. +-+||+.+..=..+..- ..+. . +
T Consensus 36 slrlYdv~~~~l~~~~~-~~~p----lL~c~F~d~~~~~~G~~dg~------vr~~Dln~~~~~~igth-~~~i--~--c 99 (323)
T KOG1036|consen 36 SLRLYDVPANSLKLKFK-HGAP----LLDCAFADESTIVTGGLDGQ------VRRYDLNTGNEDQIGTH-DEGI--R--C 99 (323)
T ss_pred cEEEEeccchhhhhhee-cCCc----eeeeeccCCceEEEeccCce------EEEEEecCCcceeeccC-CCce--E--E
Confidence 56778877773221110 0111 12233445555667776654 78999988877666421 1111 1 1
Q ss_pred EEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCCCcCeEEEEEC
Q 010115 254 AALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDI 332 (518)
Q Consensus 254 ~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 332 (518)
+... ... .+|.||.++. +-.+|+.... .. +..-.+..-+++-+ .+..+|+|+... .+.+||+
T Consensus 100 i~~~~~~~-~vIsgsWD~~-----ik~wD~R~~~---~~--~~~d~~kkVy~~~v-~g~~LvVg~~~r-----~v~iyDL 162 (323)
T KOG1036|consen 100 IEYSYEVG-CVISGSWDKT-----IKFWDPRNKV---VV--GTFDQGKKVYCMDV-SGNRLVVGTSDR-----KVLIYDL 162 (323)
T ss_pred EEeeccCC-eEEEcccCcc-----EEEEeccccc---cc--cccccCceEEEEec-cCCEEEEeecCc-----eEEEEEc
Confidence 2222 233 6888988764 7788876511 11 11122223334444 455556665543 4889998
Q ss_pred CCC
Q 010115 333 LKG 335 (518)
Q Consensus 333 ~~~ 335 (518)
.+.
T Consensus 163 Rn~ 165 (323)
T KOG1036|consen 163 RNL 165 (323)
T ss_pred ccc
Confidence 664
No 186
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=24.52 E-value=6.9e+02 Score=25.66 Aligned_cols=104 Identities=14% Similarity=0.119 Sum_probs=48.2
Q ss_pred CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECC-EEEEEcccCCCCcccCcEEEEEcCCC
Q 010115 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSL 234 (518)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~ 234 (518)
+..+++|.=...-......+|..+.......++.. .++....+|---..++ .|+..+..... .-.-+..||+.+.
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~--~~~~e~~gHEfw~~DG~~i~y~~~~~~~--~~~~i~~~d~~t~ 274 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR--RMEGESVGHEFWVPDGSTIWYDSYTPGG--QDFWIAGYDPDTG 274 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-----TTEEEEEEEE-TTSS-EEEEEEETTT----EEEEEE-TTT-
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeec--CCCCcccccccccCCCCEEEEEeecCCC--CceEEEeeCCCCC
Confidence 34555553222222223369999988777666654 2344455555555554 44444432322 2234778999887
Q ss_pred cEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCC
Q 010115 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSS 269 (518)
Q Consensus 235 ~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~ 269 (518)
.=+.+. .+| ...|-+...+++ +++--|.+
T Consensus 275 ~~~~~~---~~p--~~~H~~ss~Dg~-L~vGDG~d 303 (386)
T PF14583_consen 275 ERRRLM---EMP--WCSHFMSSPDGK-LFVGDGGD 303 (386)
T ss_dssp -EEEEE---EE---SEEEEEE-TTSS-EEEEEE--
T ss_pred CceEEE---eCC--ceeeeEEcCCCC-EEEecCCC
Confidence 544343 343 466777777888 77765654
No 187
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=22.81 E-value=2.7e+02 Score=27.09 Aligned_cols=61 Identities=15% Similarity=0.323 Sum_probs=37.7
Q ss_pred EEECCEEEEEcccCCCCc-ccCcEEEEEcC-CCcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCC
Q 010115 204 VRASSVLILFGGEDGKRR-KLNDLHMFDLK-SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGS 268 (518)
Q Consensus 204 ~~~~~~iyv~GG~~~~~~-~~~~~~~yd~~-t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~ 268 (518)
..++++.+++|-...... ..+.+..|.-. .++|+.++. .+-......-.+.+++. +|+||.
T Consensus 33 F~~~Gk~~IaGRVE~Rdswe~S~V~fF~e~g~~~w~~v~~--~~~~~LqDPF~t~I~ge--lifGGv 95 (298)
T PF08950_consen 33 FEYNGKTVIAGRVEKRDSWEHSEVRFFEETGKDEWTPVEG--APVFQLQDPFVTRIQGE--LIFGGV 95 (298)
T ss_dssp EEETTEEEEEEEEE-TT-SS--EEEEEEEEETTEEEE-TT-----BS-EEEEEEEETTE--EEEEEE
T ss_pred eeECCEEEEEeeeecCCchhccEEEEEEEeCCCeEEECCC--cceEEecCcceeeECCE--EEEeeE
Confidence 457889999987655544 45667777665 789999972 34444555667788888 578885
No 188
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=21.78 E-value=9.3e+02 Score=25.14 Aligned_cols=64 Identities=17% Similarity=0.147 Sum_probs=40.6
Q ss_pred CcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCc
Q 010115 164 GKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (518)
Q Consensus 164 G~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 235 (518)
-+.......+++|.+|-.-+.--++.. --|..|. .++-..++.+|++-=+ .++-++..|+++-+
T Consensus 397 dW~~~de~~N~vYilDe~lnvvGkltG--l~~gERI-YAvRf~gdv~yiVTfr-----qtDPlfviDlsNPe 460 (603)
T COG4880 397 DWTSEDEPVNAVYILDENLNVVGKLTG--LAPGERI-YAVRFVGDVLYIVTFR-----QTDPLFVIDLSNPE 460 (603)
T ss_pred ccccCCCccceeEEEcCCCcEEEEEec--cCCCceE-EEEEEeCceEEEEEEe-----ccCceEEEEcCCCC
Confidence 333345567889999987776666653 2344454 4566678888887332 24557888886543
No 189
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=20.64 E-value=8.3e+02 Score=24.14 Aligned_cols=102 Identities=14% Similarity=0.216 Sum_probs=55.8
Q ss_pred ECCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCcccCcEEEEEcCC
Q 010115 155 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKS 233 (518)
Q Consensus 155 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t 233 (518)
.+..=.+.||..+ .|-+||+.+..=..+-... .+.. ++.. .....+|.||.+.. +..+|+..
T Consensus 63 ~d~~~~~~G~~dg------~vr~~Dln~~~~~~igth~-~~i~----ci~~~~~~~~vIsgsWD~~------ik~wD~R~ 125 (323)
T KOG1036|consen 63 ADESTIVTGGLDG------QVRRYDLNTGNEDQIGTHD-EGIR----CIEYSYEVGCVISGSWDKT------IKFWDPRN 125 (323)
T ss_pred cCCceEEEeccCc------eEEEEEecCCcceeeccCC-CceE----EEEeeccCCeEEEcccCcc------EEEEeccc
Confidence 3455556677654 6889999998866655311 1111 1111 33456777887754 66777765
Q ss_pred CcEEEeecCCCCCCCCCCcEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC
Q 010115 234 LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM 285 (518)
Q Consensus 234 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 285 (518)
. ... +..-.+..-+++.+.++. +|.|+.+. .+..||+.+.
T Consensus 126 ~---~~~--~~~d~~kkVy~~~v~g~~--LvVg~~~r-----~v~iyDLRn~ 165 (323)
T KOG1036|consen 126 K---VVV--GTFDQGKKVYCMDVSGNR--LVVGTSDR-----KVLIYDLRNL 165 (323)
T ss_pred c---ccc--cccccCceEEEEeccCCE--EEEeecCc-----eEEEEEcccc
Confidence 1 111 122222234455444444 56665543 5889998654
No 190
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=20.49 E-value=9.1e+02 Score=24.56 Aligned_cols=161 Identities=17% Similarity=0.134 Sum_probs=89.6
Q ss_pred ECCEEEEEcCcCCCCCCCcEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcCcCCCCCCceeEE
Q 010115 97 IGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVW 176 (518)
Q Consensus 97 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~ 176 (518)
.++++|+..+. .+.+.++|..+++-...... ...| .+.++...++++|+..... ..+.+.
T Consensus 84 ~~~~vyv~~~~-----~~~v~vid~~~~~~~~~~~v---------G~~P--~~~~~~~~~~~vYV~n~~~----~~~~vs 143 (381)
T COG3391 84 AGNKVYVTTGD-----SNTVSVIDTATNTVLGSIPV---------GLGP--VGLAVDPDGKYVYVANAGN----GNNTVS 143 (381)
T ss_pred CCCeEEEecCC-----CCeEEEEcCcccceeeEeee---------ccCC--ceEEECCCCCEEEEEeccc----CCceEE
Confidence 36779998875 46788888666543333221 1111 1223333467999985532 235799
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCC-CcEEE
Q 010115 177 TFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS-NHVAA 255 (518)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~-~~~~~ 255 (518)
.+|..+++=....+.+..| .+-+....++++|+.= ...+.+..+|..+..-..-......+.... ....+
T Consensus 144 vid~~t~~~~~~~~vG~~P---~~~a~~p~g~~vyv~~------~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v 214 (381)
T COG3391 144 VIDAATNKVTATIPVGNTP---TGVAVDPDGNKVYVTN------SDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAV 214 (381)
T ss_pred EEeCCCCeEEEEEecCCCc---ceEEECCCCCeEEEEe------cCCCeEEEEeCCCcceeccccccccccCCCCceEEE
Confidence 9999998866555445444 3322233567899974 234678889987765443111111222222 22223
Q ss_pred EECCcEEEEEcCCCCCCCCCcEEEEEcCCCeEEE
Q 010115 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR 289 (518)
Q Consensus 256 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 289 (518)
-.++.++|+.-..+. .+.+..+|..++.=..
T Consensus 215 ~~~g~~~yV~~~~~~---~~~v~~id~~~~~v~~ 245 (381)
T COG3391 215 DPDGNRVYVANDGSG---SNNVLKIDTATGNVTA 245 (381)
T ss_pred CCCCCEEEEEeccCC---CceEEEEeCCCceEEE
Confidence 335555888754432 2468888887755333
No 191
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=20.34 E-value=6.7e+02 Score=26.70 Aligned_cols=87 Identities=14% Similarity=0.092 Sum_probs=48.8
Q ss_pred CCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCC
Q 010115 168 SGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPS 247 (518)
Q Consensus 168 ~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~ 247 (518)
++..++.++.+|+.++.=-.-++ . ....+..+...++.+.+++|+.++. .-.+...|+.+..-..-+ ..
T Consensus 370 ~~~~ls~LvllD~~tg~~l~~S~---~-~~Ir~r~~~~~~~~~vaI~g~~G~~--~ikLvlid~~tLev~kes---~~-- 438 (489)
T PF05262_consen 370 PNHYLSELVLLDSDTGDTLKRSP---V-NGIRGRTFYEREDDLVAIAGCSGNA--AIKLVLIDPETLEVKKES---ED-- 438 (489)
T ss_pred CCCcceeEEEEeCCCCceecccc---c-ceeccceeEEcCCCEEEEeccCCch--heEEEecCcccceeeeec---cc--
Confidence 34456789999999986443332 2 2233345556788899999995542 223444466655544433 22
Q ss_pred CCCCcEEEEECCcEEEEE
Q 010115 248 PRSNHVAALYDDKNLLIF 265 (518)
Q Consensus 248 ~r~~~~~~~~~~~~lyv~ 265 (518)
..+..+....++.++|++
T Consensus 439 ~i~~~S~l~~~~~~iyaV 456 (489)
T PF05262_consen 439 EISWQSSLIVDGQMIYAV 456 (489)
T ss_pred cccccCceEEcCCeEEEE
Confidence 223333445555556644
No 192
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=20.01 E-value=8.4e+02 Score=23.94 Aligned_cols=259 Identities=14% Similarity=0.140 Sum_probs=126.6
Q ss_pred CCceEeccCCCCCCcceecccccccccCCCCCCCCeEEeccCCCCCCCccceEEE-EECCEEEEEcCcCCCCCCCcEEEE
Q 010115 41 SECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAA-VIGNKMIVVGGESGNGLLDDVQVL 119 (518)
Q Consensus 41 ~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~R~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~y 119 (518)
++.-+++|++..-.. .+ ...+.|.+.. .+..|..+..+ +++++=++.|- ..-+++-
T Consensus 54 g~~gwlVg~rgtile---------td----d~g~tw~qal----~~~gr~~f~sv~f~~~egw~vGe------~sqll~T 110 (339)
T COG4447 54 GSHGWLVGGRGTILE---------TD----DGGITWAQAL----DFLGRHAFHSVSFLGMEGWIVGE------PSQLLHT 110 (339)
T ss_pred CcceEEEcCcceEEE---------ec----CCcccchhhh----chhhhhheeeeeeecccccccCC------cceEEEe
Confidence 566888898543221 11 1557788874 45545544443 34554555553 1234444
Q ss_pred EcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCceeEEEEECCCCcEEEeeecCCCC--C
Q 010115 120 NFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP--V 196 (518)
Q Consensus 120 d~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p--~ 196 (518)
+-...+|.+++... .++. .-.++..+ +++-|++|-+. .++.-+---+.|+.+.+.. .+ .
T Consensus 111 ~DgGqsWARi~~~e---------~~eg-~~~sI~f~d~q~g~m~gd~G-------ail~T~DgGk~Wk~l~e~~-v~~~~ 172 (339)
T COG4447 111 TDGGQSWARIPLSE---------KLEG-FPDSITFLDDQRGEMLGDQG-------AILKTTDGGKNWKALVEKA-VGLAV 172 (339)
T ss_pred cCCCcchhhchhhc---------CCCC-CcceeEEecchhhhhhcccc-------eEEEecCCcccHhHhcccc-cchhh
Confidence 44567999998642 1222 22344444 45566666532 3555555567799876533 23 2
Q ss_pred CCcceEEEEECCEEEEEcccCCCCcccCcEEEEEcCCCcEEEeecCCCCCCCCCCcEEEEECC--cEEEEEcCCCCCCCC
Q 010115 197 ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD--KNLLIFGGSSKSKTL 274 (518)
Q Consensus 197 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~--~~lyv~GG~~~~~~~ 274 (518)
+|.. ....++...++|-...- .-..+.-...| ... .....|..-++..-+. +-+++.||..
T Consensus 173 ~n~i--a~s~dng~vaVg~rGs~------f~T~~aGqt~~-~~~---g~~s~~~letmg~adag~~g~la~g~qg----- 235 (339)
T COG4447 173 PNEI--ARSADNGYVAVGARGSF------FSTWGAGQTVW-LPH---GRNSSRRLETMGLADAGSKGLLARGGQG----- 235 (339)
T ss_pred hhhh--hhhccCCeEEEecCcce------EecCCCCccEE-ecc---CCCccchhcccccccCCccceEEEcccc-----
Confidence 3322 22335555555543211 00112222223 222 1112222222322222 2477888753
Q ss_pred CcEEEEEcCCCeEEEeecCCCCCCCCcceE----EEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeecCCCCCCCC
Q 010115 275 NDLYSLDFETMIWTRIKIRGFHPSPRAGCC----GVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTS 350 (518)
Q Consensus 275 ~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~----~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~ 350 (518)
+.+......+.|+.+...- ...|.... +-...+.+||.|+.. .+..--....+|++...-+ ..
T Consensus 236 -~~f~~~~~gD~wsd~~~~~--~~g~~~~Gl~d~a~~a~~~v~v~G~gG------nvl~StdgG~t~skd~g~~----er 302 (339)
T COG4447 236 -DQFSWVCGGDEWSDQGEPV--NLGRRSWGLLDFAPRAPPEVWVSGIGG------NVLASTDGGTTWSKDGGVE----ER 302 (339)
T ss_pred -ceeecCCCcccccccccch--hcccCCCccccccccCCCCeEEeccCc------cEEEecCCCeeEeccCChh----hh
Confidence 3556666788898876521 11222222 122378899988732 2455545567788754211 11
Q ss_pred CC-CceEEEEeeCCccEEEEEcCC
Q 010115 351 NK-GFTLVLVQHKEKDFLVAFGGI 373 (518)
Q Consensus 351 r~-~~s~~~~~~~~~~~l~v~GG~ 373 (518)
.. -++++... .++.+++|-.
T Consensus 303 ~s~l~~V~~ts---~~~~~l~Gq~ 323 (339)
T COG4447 303 VSNLYSVVFTS---PKAGFLCGQK 323 (339)
T ss_pred hhhhheEEecc---CCceEEEcCC
Confidence 11 23444443 3456677643
Done!